Query 020011
Match_columns 332
No_of_seqs 237 out of 849
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 4E-106 9E-111 805.3 23.0 312 1-321 191-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 5.4E-40 1.2E-44 329.6 9.7 208 96-325 26-264 (506)
3 PF08241 Methyltransf_11: Meth 99.6 3.8E-16 8.1E-21 120.9 7.5 89 186-281 1-95 (95)
4 COG2226 UbiE Methylase involve 99.5 2.5E-14 5.3E-19 134.1 10.8 115 160-285 36-158 (238)
5 PF01209 Ubie_methyltran: ubiE 99.5 5.5E-14 1.2E-18 131.0 8.6 115 160-284 32-154 (233)
6 PF13489 Methyltransf_23: Meth 99.5 5E-14 1.1E-18 119.5 6.2 95 181-286 22-118 (161)
7 PLN02233 ubiquinone biosynthes 99.5 2.8E-13 6E-18 127.7 10.3 98 182-284 74-183 (261)
8 PRK14103 trans-aconitate 2-met 99.4 6.9E-13 1.5E-17 123.6 11.1 104 174-284 22-127 (255)
9 PLN02396 hexaprenyldihydroxybe 99.4 4.7E-13 1E-17 130.4 8.9 98 182-285 132-237 (322)
10 PRK10258 biotin biosynthesis p 99.4 1.5E-12 3.2E-17 120.7 10.9 97 181-285 42-142 (251)
11 PRK11036 putative S-adenosyl-L 99.4 2.7E-12 5.9E-17 119.8 11.3 98 181-284 44-150 (255)
12 PF12847 Methyltransf_18: Meth 99.4 1E-12 2.2E-17 106.0 6.9 100 182-284 2-112 (112)
13 PLN02244 tocopherol O-methyltr 99.4 3.9E-12 8.5E-17 124.2 11.1 96 180-283 117-223 (340)
14 TIGR00477 tehB tellurite resis 99.4 2.4E-12 5.3E-17 116.1 8.7 96 182-282 31-132 (195)
15 PTZ00098 phosphoethanolamine N 99.3 3E-12 6.5E-17 120.8 9.4 101 181-284 52-157 (263)
16 PRK05785 hypothetical protein; 99.3 9.5E-12 2.1E-16 115.1 12.0 111 161-284 35-149 (226)
17 PRK11207 tellurite resistance 99.3 3.4E-12 7.4E-17 115.3 8.8 95 182-281 31-132 (197)
18 PF02353 CMAS: Mycolic acid cy 99.3 3.8E-12 8.3E-17 121.4 9.5 100 180-283 61-166 (273)
19 PRK00107 gidB 16S rRNA methylt 99.3 2.5E-11 5.4E-16 109.8 14.0 152 160-322 26-187 (187)
20 COG2227 UbiG 2-polyprenyl-3-me 99.3 2.6E-12 5.7E-17 120.2 7.8 97 182-285 60-163 (243)
21 TIGR00740 methyltransferase, p 99.3 8.1E-12 1.7E-16 115.3 10.6 102 182-284 54-162 (239)
22 PRK01683 trans-aconitate 2-met 99.3 1.4E-11 3.1E-16 114.4 11.6 119 177-301 27-152 (258)
23 TIGR00452 methyltransferase, p 99.3 1.5E-11 3.2E-16 119.6 10.6 117 161-283 102-225 (314)
24 TIGR02752 MenG_heptapren 2-hep 99.3 1.7E-11 3.6E-16 111.8 10.2 98 182-284 46-152 (231)
25 PRK15451 tRNA cmo(5)U34 methyl 99.3 9.8E-12 2.1E-16 115.9 8.5 100 182-284 57-165 (247)
26 PF07021 MetW: Methionine bios 99.3 9.3E-12 2E-16 113.2 8.0 95 182-285 14-111 (193)
27 smart00828 PKS_MT Methyltransf 99.3 1.3E-11 2.9E-16 112.0 8.8 98 183-284 1-105 (224)
28 PRK15068 tRNA mo(5)U34 methylt 99.3 1.5E-11 3.2E-16 119.7 9.4 103 176-283 117-226 (322)
29 smart00138 MeTrc Methyltransfe 99.3 2E-11 4.3E-16 115.6 9.9 132 151-285 68-244 (264)
30 PRK11705 cyclopropane fatty ac 99.3 2.5E-11 5.5E-16 120.7 10.4 97 181-283 167-267 (383)
31 PF08242 Methyltransf_12: Meth 99.2 1.4E-12 3E-17 103.9 1.0 90 186-279 1-99 (99)
32 TIGR02072 BioC biotin biosynth 99.2 5.2E-11 1.1E-15 107.3 10.7 97 182-284 35-136 (240)
33 PRK12335 tellurite resistance 99.2 1.8E-11 4E-16 116.5 7.8 115 183-305 122-257 (287)
34 PLN02336 phosphoethanolamine N 99.2 2.1E-11 4.6E-16 123.1 8.6 97 181-284 266-370 (475)
35 PF05401 NodS: Nodulation prot 99.2 1.1E-11 2.3E-16 113.3 5.6 141 177-320 39-193 (201)
36 PRK08317 hypothetical protein; 99.2 6.4E-11 1.4E-15 106.4 10.1 101 181-284 19-125 (241)
37 PRK11088 rrmA 23S rRNA methylt 99.2 8.7E-11 1.9E-15 110.9 10.6 94 181-286 85-184 (272)
38 TIGR03587 Pse_Me-ase pseudamin 99.2 7.6E-11 1.6E-15 107.7 9.6 95 182-283 44-142 (204)
39 PF13847 Methyltransf_31: Meth 99.2 9.2E-11 2E-15 100.8 9.1 99 182-285 4-112 (152)
40 PLN02336 phosphoethanolamine N 99.2 5.5E-11 1.2E-15 120.1 8.8 99 182-284 38-143 (475)
41 KOG1270 Methyltransferases [Co 99.2 1.1E-10 2.4E-15 110.5 9.5 98 182-285 90-197 (282)
42 TIGR00138 gidB 16S rRNA methyl 99.2 1.7E-10 3.8E-15 103.5 10.0 127 161-299 25-158 (181)
43 TIGR00406 prmA ribosomal prote 99.1 5E-10 1.1E-14 107.1 12.6 139 154-305 136-281 (288)
44 PF13649 Methyltransf_25: Meth 99.1 2.7E-11 5.9E-16 97.3 3.1 92 185-277 1-101 (101)
45 PRK11873 arsM arsenite S-adeno 99.1 1.3E-10 2.8E-15 109.1 8.2 96 182-283 78-183 (272)
46 COG2230 Cfa Cyclopropane fatty 99.1 4.6E-10 1E-14 107.7 10.6 128 152-283 42-176 (283)
47 PRK06202 hypothetical protein; 99.1 4.1E-10 8.8E-15 103.5 9.8 100 180-284 59-167 (232)
48 TIGR00537 hemK_rel_arch HemK-r 99.1 8E-10 1.7E-14 97.7 10.8 120 182-305 20-163 (179)
49 TIGR02081 metW methionine bios 99.1 3.5E-10 7.6E-15 101.4 8.4 90 182-276 14-105 (194)
50 KOG1540 Ubiquinone biosynthesi 99.1 6E-10 1.3E-14 105.4 10.2 117 176-296 95-228 (296)
51 PF03848 TehB: Tellurite resis 99.1 3.5E-10 7.7E-15 103.1 8.1 95 182-282 31-132 (192)
52 TIGR02021 BchM-ChlM magnesium 99.1 7.3E-10 1.6E-14 100.8 9.9 101 181-285 55-160 (219)
53 PLN02490 MPBQ/MSBQ methyltrans 99.1 6.3E-10 1.4E-14 109.4 9.6 97 182-284 114-216 (340)
54 PRK08287 cobalt-precorrin-6Y C 99.0 1.3E-09 2.8E-14 97.0 10.2 113 181-301 31-150 (187)
55 PRK00121 trmB tRNA (guanine-N( 99.0 7.4E-10 1.6E-14 100.6 8.7 122 181-303 40-177 (202)
56 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2.1E-09 4.6E-14 96.1 10.7 99 181-284 39-144 (223)
57 PRK07580 Mg-protoporphyrin IX 99.0 2.7E-09 5.9E-14 96.8 11.1 98 181-283 63-166 (230)
58 TIGR02716 C20_methyl_CrtF C-20 99.0 1.1E-09 2.3E-14 105.0 8.8 102 180-284 148-255 (306)
59 COG4976 Predicted methyltransf 99.0 2E-10 4.4E-15 107.3 3.4 143 174-322 118-286 (287)
60 PRK06922 hypothetical protein; 99.0 8.3E-10 1.8E-14 116.1 7.8 102 182-284 419-538 (677)
61 PRK00517 prmA ribosomal protei 99.0 2.7E-09 5.9E-14 99.8 10.2 112 182-305 120-236 (250)
62 PRK14968 putative methyltransf 99.0 5.3E-09 1.2E-13 91.5 11.2 118 181-304 23-170 (188)
63 PRK05134 bifunctional 3-demeth 99.0 6E-09 1.3E-13 95.3 11.5 99 181-285 48-153 (233)
64 TIGR01983 UbiG ubiquinone bios 99.0 2.8E-09 6.2E-14 96.4 9.2 97 182-284 46-150 (224)
65 PRK11188 rrmJ 23S rRNA methylt 98.9 7.9E-10 1.7E-14 101.3 5.3 100 182-284 52-166 (209)
66 TIGR03840 TMPT_Se_Te thiopurin 98.9 2.6E-09 5.7E-14 98.4 8.6 96 182-281 35-150 (213)
67 TIGR00438 rrmJ cell division p 98.9 2.2E-09 4.9E-14 95.7 7.8 134 182-320 33-186 (188)
68 PRK13255 thiopurine S-methyltr 98.9 2.8E-09 6.1E-14 98.5 8.4 96 182-281 38-153 (218)
69 PRK00216 ubiE ubiquinone/menaq 98.9 7.8E-09 1.7E-13 93.4 10.8 97 182-283 52-158 (239)
70 TIGR00091 tRNA (guanine-N(7)-) 98.9 3.5E-09 7.7E-14 95.3 8.4 113 182-295 17-145 (194)
71 PF08003 Methyltransf_9: Prote 98.9 3.6E-09 7.9E-14 102.4 8.9 105 173-283 107-219 (315)
72 COG4106 Tam Trans-aconitate me 98.9 5.3E-09 1.2E-13 97.1 9.4 143 173-326 22-191 (257)
73 TIGR02469 CbiT precorrin-6Y C5 98.9 6.7E-09 1.4E-13 84.4 8.5 94 182-283 20-122 (124)
74 TIGR03534 RF_mod_PrmC protein- 98.9 1.2E-08 2.6E-13 93.6 10.6 119 182-302 88-236 (251)
75 PRK09328 N5-glutamine S-adenos 98.9 3.2E-08 7E-13 92.3 13.2 137 182-321 109-275 (275)
76 PRK09489 rsmC 16S ribosomal RN 98.9 1.4E-08 3.1E-13 99.8 10.9 101 183-285 198-305 (342)
77 TIGR00536 hemK_fam HemK family 98.9 2.2E-08 4.9E-13 95.4 11.7 135 183-322 116-283 (284)
78 COG2264 PrmA Ribosomal protein 98.8 3.6E-08 7.8E-13 95.5 12.8 142 154-307 139-288 (300)
79 PRK04266 fibrillarin; Provisio 98.8 4.3E-08 9.3E-13 91.2 12.6 95 182-282 73-175 (226)
80 PRK15001 SAM-dependent 23S rib 98.8 1.6E-08 3.4E-13 100.9 9.3 113 182-295 229-354 (378)
81 PRK00377 cbiT cobalt-precorrin 98.8 4.9E-08 1.1E-12 88.0 11.2 116 181-303 40-166 (198)
82 PLN03075 nicotianamine synthas 98.8 4.8E-08 1E-12 94.5 11.7 140 181-323 123-276 (296)
83 KOG4300 Predicted methyltransf 98.8 1.7E-08 3.7E-13 93.2 8.0 119 162-285 52-184 (252)
84 cd02440 AdoMet_MTases S-adenos 98.8 3E-08 6.5E-13 75.2 7.9 95 184-282 1-103 (107)
85 PRK13944 protein-L-isoaspartat 98.8 1.7E-08 3.6E-13 91.8 7.5 91 182-284 73-174 (205)
86 PRK13942 protein-L-isoaspartat 98.8 2.1E-08 4.6E-13 91.8 7.9 93 182-283 77-176 (212)
87 TIGR00080 pimt protein-L-isoas 98.7 2E-08 4.3E-13 91.6 7.3 92 182-283 78-177 (215)
88 PRK14121 tRNA (guanine-N(7)-)- 98.7 3.1E-08 6.8E-13 99.1 9.1 113 182-295 123-248 (390)
89 PLN02585 magnesium protoporphy 98.7 4.2E-08 9.1E-13 95.6 9.7 98 182-284 145-251 (315)
90 PRK14967 putative methyltransf 98.7 5.4E-08 1.2E-12 89.3 9.8 117 182-301 37-178 (223)
91 TIGR03533 L3_gln_methyl protei 98.7 1.3E-07 2.8E-12 90.6 12.0 118 182-301 122-268 (284)
92 PF06325 PrmA: Ribosomal prote 98.7 7.5E-08 1.6E-12 93.2 10.3 138 153-305 137-281 (295)
93 PF05175 MTS: Methyltransferas 98.7 9.9E-08 2.2E-12 84.2 10.2 114 182-296 32-155 (170)
94 TIGR03438 probable methyltrans 98.7 2.7E-08 5.8E-13 95.8 7.1 100 182-283 64-177 (301)
95 TIGR03704 PrmC_rel_meth putati 98.7 1.1E-07 2.3E-12 89.6 10.2 127 182-309 87-242 (251)
96 PF13659 Methyltransf_26: Meth 98.6 2.9E-08 6.3E-13 80.7 4.4 100 183-284 2-116 (117)
97 PRK00312 pcm protein-L-isoaspa 98.6 1.6E-07 3.5E-12 85.2 9.1 90 181-284 78-176 (212)
98 PRK14966 unknown domain/N5-glu 98.6 2.7E-07 5.8E-12 93.2 11.3 136 183-322 253-419 (423)
99 COG2890 HemK Methylase of poly 98.6 6.8E-07 1.5E-11 85.7 13.6 156 156-321 92-276 (280)
100 PRK01544 bifunctional N5-gluta 98.6 2.3E-07 5.1E-12 95.6 11.1 136 182-320 139-305 (506)
101 PTZ00146 fibrillarin; Provisio 98.6 1.1E-07 2.3E-12 92.0 7.4 95 182-282 133-236 (293)
102 PF00891 Methyltransf_2: O-met 98.6 6.6E-08 1.4E-12 89.2 5.7 103 177-285 96-201 (241)
103 PRK11805 N5-glutamine S-adenos 98.6 4.1E-07 8.9E-12 88.2 11.3 116 183-300 135-281 (307)
104 KOG3010 Methyltransferase [Gen 98.6 1.1E-07 2.4E-12 89.5 6.2 112 182-301 34-158 (261)
105 PRK07402 precorrin-6B methylas 98.6 4.6E-07 1E-11 81.3 10.1 110 181-298 40-158 (196)
106 PF05148 Methyltransf_8: Hypot 98.6 2.1E-07 4.5E-12 86.1 7.9 138 153-308 31-186 (219)
107 PRK04457 spermidine synthase; 98.5 6.6E-07 1.4E-11 84.8 11.5 100 181-282 66-176 (262)
108 TIGR01177 conserved hypothetic 98.5 2.3E-07 5E-12 90.2 8.5 113 182-300 183-309 (329)
109 KOG1541 Predicted protein carb 98.5 6.4E-07 1.4E-11 83.7 10.2 121 177-301 46-178 (270)
110 KOG2361 Predicted methyltransf 98.5 3.3E-07 7.1E-12 86.3 8.1 100 184-284 74-184 (264)
111 PF01739 CheR: CheR methyltran 98.5 4.2E-07 9.1E-12 83.1 7.4 129 154-285 3-177 (196)
112 COG4123 Predicted O-methyltran 98.4 1.1E-06 2.5E-11 83.1 10.1 121 182-304 45-191 (248)
113 PLN02232 ubiquinone biosynthes 98.4 3.2E-07 6.9E-12 80.4 6.0 71 211-285 2-83 (160)
114 PRK00811 spermidine synthase; 98.4 6.2E-07 1.3E-11 85.9 8.2 102 180-283 75-191 (283)
115 PF05219 DREV: DREV methyltran 98.4 1.2E-06 2.5E-11 83.5 9.1 119 151-283 66-188 (265)
116 TIGR00563 rsmB ribosomal RNA s 98.4 1.4E-06 3E-11 87.8 10.2 101 181-283 238-368 (426)
117 PRK10901 16S rRNA methyltransf 98.4 2.1E-06 4.5E-11 86.6 10.3 102 181-284 244-373 (427)
118 PF03291 Pox_MCEL: mRNA cappin 98.4 9.5E-07 2.1E-11 86.8 7.6 103 181-286 62-189 (331)
119 PRK14904 16S rRNA methyltransf 98.3 1.7E-06 3.7E-11 87.7 9.3 103 181-284 250-378 (445)
120 TIGR00417 speE spermidine synt 98.3 1.8E-06 4E-11 81.8 8.9 104 179-284 70-187 (270)
121 PF02390 Methyltransf_4: Putat 98.3 1.5E-06 3.2E-11 79.2 7.9 113 184-297 20-148 (195)
122 PRK14902 16S rRNA methyltransf 98.3 2.3E-06 4.9E-11 86.6 8.9 104 181-284 250-380 (444)
123 PRK14901 16S rRNA methyltransf 98.3 4.3E-06 9.3E-11 84.5 10.3 116 181-297 252-402 (434)
124 PLN02366 spermidine synthase 98.3 2.3E-06 5E-11 83.3 8.0 100 181-283 91-206 (308)
125 PF05891 Methyltransf_PK: AdoM 98.3 1.7E-06 3.7E-11 80.4 6.7 102 181-285 55-163 (218)
126 COG0500 SmtA SAM-dependent met 98.2 6.4E-06 1.4E-10 63.4 8.3 94 185-285 52-157 (257)
127 KOG3045 Predicted RNA methylas 98.2 1.9E-06 4E-11 82.2 6.2 105 183-307 182-291 (325)
128 PRK14903 16S rRNA methyltransf 98.2 2.4E-06 5.3E-11 86.5 7.5 104 181-285 237-368 (431)
129 PRK11783 rlmL 23S rRNA m(2)G24 98.2 3.1E-06 6.8E-11 90.5 8.4 119 182-305 539-678 (702)
130 PRK13943 protein-L-isoaspartat 98.2 4.5E-06 9.7E-11 81.8 8.6 92 182-283 81-180 (322)
131 COG2813 RsmC 16S RNA G1207 met 98.2 5.5E-06 1.2E-10 80.3 8.8 177 103-296 94-281 (300)
132 TIGR00446 nop2p NOL1/NOP2/sun 98.2 6.3E-06 1.4E-10 78.0 8.9 103 182-284 72-200 (264)
133 PRK01581 speE spermidine synth 98.2 4.3E-06 9.2E-11 83.3 8.0 104 180-285 149-270 (374)
134 PF06080 DUF938: Protein of un 98.2 1.6E-05 3.4E-10 73.5 10.7 134 184-321 28-204 (204)
135 PHA03411 putative methyltransf 98.2 4.5E-06 9.7E-11 80.3 7.5 98 182-282 65-182 (279)
136 PRK13256 thiopurine S-methyltr 98.2 3.3E-06 7.2E-11 78.9 6.4 98 182-283 44-163 (226)
137 PLN02781 Probable caffeoyl-CoA 98.1 1.9E-05 4.1E-10 73.7 10.6 96 181-283 68-178 (234)
138 PRK03612 spermidine synthase; 98.1 1.2E-05 2.7E-10 83.2 10.0 121 181-302 297-439 (521)
139 KOG1271 Methyltransferases [Ge 98.1 6.3E-06 1.4E-10 75.2 6.8 113 183-298 69-196 (227)
140 PF01728 FtsJ: FtsJ-like methy 98.1 1.1E-05 2.3E-10 71.4 7.9 139 177-321 19-180 (181)
141 KOG1269 SAM-dependent methyltr 98.1 4.5E-06 9.7E-11 83.1 5.8 117 156-283 88-215 (364)
142 PRK10611 chemotaxis methyltran 98.1 1.9E-05 4.2E-10 76.3 9.5 125 151-285 91-264 (287)
143 TIGR00478 tly hemolysin TlyA f 98.0 2.6E-05 5.6E-10 73.0 9.3 107 181-303 75-213 (228)
144 PF01135 PCMT: Protein-L-isoas 98.0 3E-06 6.4E-11 78.2 2.9 100 170-284 64-173 (209)
145 PRK13168 rumA 23S rRNA m(5)U19 98.0 3.5E-05 7.6E-10 78.0 10.0 103 182-294 298-412 (443)
146 PRK15128 23S rRNA m(5)C1962 me 97.9 5.4E-05 1.2E-09 76.1 10.0 101 182-284 221-340 (396)
147 smart00650 rADc Ribosomal RNA 97.9 2.7E-05 6E-10 68.3 6.7 94 181-284 13-114 (169)
148 COG0220 Predicted S-adenosylme 97.9 3.1E-05 6.7E-10 72.5 6.8 112 183-295 50-178 (227)
149 PHA03412 putative methyltransf 97.9 5.1E-05 1.1E-09 71.7 8.1 97 182-281 50-160 (241)
150 COG2242 CobL Precorrin-6B meth 97.8 0.00026 5.6E-09 64.6 12.2 118 177-303 30-157 (187)
151 TIGR00479 rumA 23S rRNA (uraci 97.8 7.2E-05 1.6E-09 75.3 9.5 112 182-303 293-416 (431)
152 PRK01544 bifunctional N5-gluta 97.8 5.1E-05 1.1E-09 78.5 8.5 112 181-294 347-474 (506)
153 PF02527 GidB: rRNA small subu 97.8 0.0002 4.3E-09 65.0 11.2 137 157-302 25-170 (184)
154 KOG2940 Predicted methyltransf 97.8 1.6E-05 3.5E-10 74.9 3.8 97 182-283 73-174 (325)
155 PRK03522 rumB 23S rRNA methylu 97.8 5.6E-05 1.2E-09 73.2 7.5 96 182-287 174-278 (315)
156 PF10294 Methyltransf_16: Puta 97.8 6.2E-05 1.3E-09 67.0 6.9 122 158-284 16-157 (173)
157 KOG1975 mRNA cap methyltransfe 97.8 4.1E-05 8.8E-10 75.1 6.1 112 181-294 117-250 (389)
158 PF05185 PRMT5: PRMT5 arginine 97.8 7.2E-05 1.6E-09 76.4 8.1 146 134-280 133-294 (448)
159 COG1352 CheR Methylase of chem 97.8 0.00014 3E-09 69.7 9.4 132 152-286 67-244 (268)
160 PF05724 TPMT: Thiopurine S-me 97.7 4E-05 8.7E-10 71.1 5.3 119 182-305 38-188 (218)
161 PRK04148 hypothetical protein; 97.7 9.3E-05 2E-09 64.2 6.5 81 181-272 16-100 (134)
162 COG2521 Predicted archaeal met 97.7 0.00011 2.3E-09 69.5 7.3 137 177-322 130-287 (287)
163 PLN02476 O-methyltransferase 97.7 0.00063 1.4E-08 65.6 12.2 128 181-322 118-278 (278)
164 PLN02672 methionine S-methyltr 97.7 0.00026 5.6E-09 79.1 10.8 115 183-301 120-297 (1082)
165 KOG1331 Predicted methyltransf 97.6 5.4E-05 1.2E-09 72.9 4.4 118 154-283 23-143 (293)
166 PF01596 Methyltransf_3: O-met 97.6 0.00055 1.2E-08 63.0 10.9 129 181-322 45-205 (205)
167 COG2519 GCD14 tRNA(1-methylade 97.6 0.00054 1.2E-08 65.2 10.9 108 182-300 95-213 (256)
168 TIGR02085 meth_trns_rumB 23S r 97.6 0.00021 4.6E-09 71.1 8.4 108 182-303 234-352 (374)
169 KOG2904 Predicted methyltransf 97.6 0.00049 1.1E-08 66.4 10.4 157 158-321 128-327 (328)
170 PRK10909 rsmD 16S rRNA m(2)G96 97.5 0.0003 6.5E-09 64.5 7.8 118 156-286 33-162 (199)
171 COG2518 Pcm Protein-L-isoaspar 97.5 0.00055 1.2E-08 63.5 9.1 89 182-284 73-170 (209)
172 COG4122 Predicted O-methyltran 97.5 0.00067 1.5E-08 63.3 9.2 134 181-322 59-218 (219)
173 KOG1499 Protein arginine N-met 97.4 0.00032 6.9E-09 69.3 7.2 99 182-281 61-165 (346)
174 PF12147 Methyltransf_20: Puta 97.4 0.001 2.2E-08 64.6 9.3 127 179-305 133-277 (311)
175 PRK00536 speE spermidine synth 97.3 0.0012 2.6E-08 63.1 9.0 99 175-285 66-173 (262)
176 COG4627 Uncharacterized protei 97.2 0.00011 2.5E-09 65.5 1.2 48 237-285 40-88 (185)
177 KOG2899 Predicted methyltransf 97.2 0.00085 1.9E-08 63.8 6.9 103 182-285 59-211 (288)
178 PF09243 Rsm22: Mitochondrial 97.2 0.0026 5.6E-08 60.8 10.2 119 181-304 33-165 (274)
179 PRK14896 ksgA 16S ribosomal RN 97.2 0.00068 1.5E-08 63.9 5.9 67 182-251 30-99 (258)
180 PLN02823 spermine synthase 97.2 0.0043 9.2E-08 61.3 11.5 100 181-283 103-220 (336)
181 KOG3178 Hydroxyindole-O-methyl 97.2 0.0014 2.9E-08 64.9 7.9 99 182-284 178-276 (342)
182 PRK00274 ksgA 16S ribosomal RN 97.1 0.0006 1.3E-08 64.8 5.1 40 182-224 43-83 (272)
183 TIGR00755 ksgA dimethyladenosi 97.1 0.0019 4E-08 60.6 8.0 41 181-224 29-70 (253)
184 COG0357 GidB Predicted S-adeno 97.0 0.011 2.4E-07 55.1 12.5 152 154-319 41-209 (215)
185 PF11968 DUF3321: Putative met 97.0 0.0016 3.5E-08 60.7 6.2 112 183-305 53-179 (219)
186 PRK11933 yebU rRNA (cytosine-C 96.9 0.0036 7.7E-08 64.5 8.9 104 180-285 112-244 (470)
187 COG1092 Predicted SAM-dependen 96.7 0.0023 5E-08 64.6 5.6 102 182-285 218-338 (393)
188 PF08704 GCD14: tRNA methyltra 96.7 0.0036 7.8E-08 59.4 6.3 111 182-301 41-165 (247)
189 PTZ00338 dimethyladenosine tra 96.6 0.0033 7.2E-08 60.9 5.7 66 182-250 37-108 (294)
190 COG1189 Predicted rRNA methyla 96.6 0.016 3.6E-07 54.8 9.9 116 181-304 79-221 (245)
191 COG0421 SpeE Spermidine syntha 96.5 0.013 2.7E-07 56.8 8.7 123 175-301 70-213 (282)
192 COG1041 Predicted DNA modifica 96.5 0.023 4.9E-07 56.5 10.5 110 182-294 198-321 (347)
193 PLN02589 caffeoyl-CoA O-methyl 96.4 0.011 2.4E-07 56.1 7.6 94 181-283 79-190 (247)
194 PF07942 N2227: N2227-like pro 96.4 0.041 8.9E-07 53.0 11.5 119 181-305 56-240 (270)
195 COG3963 Phospholipid N-methylt 96.3 0.013 2.9E-07 53.1 7.2 107 176-283 43-156 (194)
196 PF02475 Met_10: Met-10+ like- 96.3 0.0083 1.8E-07 55.2 6.0 110 152-280 80-199 (200)
197 TIGR00095 RNA methyltransferas 96.3 0.015 3.2E-07 52.7 7.5 98 182-285 50-161 (189)
198 KOG3115 Methyltransferase-like 96.1 0.012 2.5E-07 55.0 5.7 99 184-285 63-185 (249)
199 PRK04338 N(2),N(2)-dimethylgua 96.1 0.011 2.3E-07 59.5 5.9 92 183-283 59-158 (382)
200 COG2263 Predicted RNA methylas 96.0 0.023 5.1E-07 52.2 7.3 70 182-253 46-118 (198)
201 TIGR02143 trmA_only tRNA (urac 96.0 0.013 2.9E-07 57.9 6.2 107 184-304 200-331 (353)
202 PRK11727 23S rRNA mA1618 methy 96.0 0.029 6.3E-07 55.2 8.3 125 177-305 110-267 (321)
203 PRK11760 putative 23S rRNA C24 95.9 0.025 5.3E-07 56.4 7.5 90 182-283 212-305 (357)
204 PF03269 DUF268: Caenorhabditi 95.7 0.0061 1.3E-07 54.8 2.3 48 239-286 59-114 (177)
205 KOG1661 Protein-L-isoaspartate 95.7 0.014 3.1E-07 54.5 4.8 95 182-285 83-195 (237)
206 PRK05031 tRNA (uracil-5-)-meth 95.7 0.026 5.7E-07 56.0 6.8 107 183-303 208-339 (362)
207 TIGR02987 met_A_Alw26 type II 95.7 0.039 8.5E-07 57.1 8.3 43 182-224 32-82 (524)
208 PF02384 N6_Mtase: N-6 DNA Met 95.6 0.022 4.7E-07 54.6 5.6 107 181-287 46-187 (311)
209 PF01170 UPF0020: Putative RNA 95.4 0.059 1.3E-06 48.3 7.3 118 182-303 29-167 (179)
210 PF01269 Fibrillarin: Fibrilla 95.4 0.053 1.1E-06 51.0 7.2 95 182-284 74-179 (229)
211 KOG1663 O-methyltransferase [S 95.3 0.041 9E-07 51.9 6.2 96 182-283 74-183 (237)
212 PF01564 Spermine_synth: Sperm 95.2 0.29 6.2E-06 46.2 11.9 161 156-323 55-239 (246)
213 PRK00050 16S rRNA m(4)C1402 me 95.2 0.017 3.7E-07 56.2 3.6 43 182-224 20-63 (296)
214 TIGR03439 methyl_EasF probable 95.2 0.058 1.3E-06 53.1 7.2 99 183-283 78-197 (319)
215 COG5459 Predicted rRNA methyla 95.2 0.065 1.4E-06 53.8 7.5 100 183-284 115-226 (484)
216 PRK13699 putative methylase; P 95.2 0.052 1.1E-06 50.7 6.5 48 237-284 13-73 (227)
217 PF10672 Methyltrans_SAM: S-ad 95.1 0.12 2.5E-06 50.3 9.0 124 151-285 102-240 (286)
218 KOG3191 Predicted N6-DNA-methy 94.9 0.23 5E-06 45.8 9.7 122 182-305 44-191 (209)
219 COG0293 FtsJ 23S rRNA methylas 94.9 0.026 5.6E-07 52.4 3.6 111 182-299 46-180 (205)
220 COG0144 Sun tRNA and rRNA cyto 94.5 0.13 2.9E-06 51.0 7.9 109 177-285 152-290 (355)
221 KOG3987 Uncharacterized conser 94.5 0.028 6.2E-07 52.7 2.8 91 181-283 112-207 (288)
222 COG2265 TrmA SAM-dependent met 94.4 0.13 2.8E-06 52.6 7.8 101 180-290 292-403 (432)
223 KOG3201 Uncharacterized conser 94.0 0.098 2.1E-06 47.4 5.1 117 182-302 30-161 (201)
224 KOG1709 Guanidinoacetate methy 93.9 0.18 3.9E-06 47.7 6.9 113 161-284 84-207 (271)
225 TIGR00308 TRM1 tRNA(guanine-26 93.9 0.12 2.6E-06 51.9 6.1 92 183-283 46-147 (374)
226 PF03602 Cons_hypoth95: Conser 93.8 0.058 1.3E-06 48.7 3.3 99 182-286 43-156 (183)
227 PF13679 Methyltransf_32: Meth 93.6 0.097 2.1E-06 44.8 4.2 43 180-224 24-72 (141)
228 KOG2798 Putative trehalase [Ca 93.5 0.73 1.6E-05 45.7 10.6 60 243-305 259-335 (369)
229 KOG1500 Protein arginine N-met 93.4 0.49 1.1E-05 47.5 9.3 117 181-305 177-311 (517)
230 PRK11524 putative methyltransf 93.3 0.22 4.8E-06 47.6 6.7 27 263-289 60-86 (284)
231 KOG2793 Putative N2,N2-dimethy 93.3 0.96 2.1E-05 43.2 10.8 96 181-283 86-199 (248)
232 KOG2352 Predicted spermine/spe 93.2 0.47 1E-05 49.1 9.1 99 184-284 51-162 (482)
233 PF13578 Methyltransf_24: Meth 93.1 0.022 4.9E-07 45.7 -0.5 92 186-283 1-105 (106)
234 PF09445 Methyltransf_15: RNA 92.6 0.13 2.8E-06 46.1 3.7 110 183-298 1-135 (163)
235 KOG1122 tRNA and rRNA cytosine 92.6 0.46 9.9E-06 48.6 7.9 105 176-285 236-373 (460)
236 PF03059 NAS: Nicotianamine sy 92.1 0.91 2E-05 44.0 9.1 139 181-323 120-273 (276)
237 PLN02668 indole-3-acetate carb 92.0 0.24 5.2E-06 50.1 5.2 18 240-257 158-176 (386)
238 COG1889 NOP1 Fibrillarin-like 90.9 6.4 0.00014 37.0 12.8 94 180-283 75-180 (231)
239 TIGR01444 fkbM_fam methyltrans 90.9 0.26 5.7E-06 41.2 3.6 35 184-219 1-36 (143)
240 PF08123 DOT1: Histone methyla 90.8 1 2.2E-05 41.6 7.6 37 243-283 122-158 (205)
241 PF07942 N2227: N2227-like pro 90.6 0.071 1.5E-06 51.4 -0.2 60 11-73 184-244 (270)
242 PF06859 Bin3: Bicoid-interact 90.6 0.086 1.9E-06 44.4 0.3 60 243-302 1-71 (110)
243 PF05958 tRNA_U5-meth_tr: tRNA 90.5 0.84 1.8E-05 45.2 7.3 107 184-303 199-329 (352)
244 PRK11783 rlmL 23S rRNA m(2)G24 90.3 1.3 2.8E-05 48.0 9.0 83 208-290 258-354 (702)
245 COG3897 Predicted methyltransf 89.8 1.2 2.6E-05 41.5 7.2 98 180-285 78-181 (218)
246 PF01189 Nol1_Nop2_Fmu: NOL1/N 89.7 0.22 4.7E-06 48.0 2.3 103 180-285 84-221 (283)
247 PF01234 NNMT_PNMT_TEMT: NNMT/ 89.2 0.17 3.8E-06 48.3 1.3 43 241-283 156-199 (256)
248 COG4798 Predicted methyltransf 88.6 2.1 4.6E-05 40.0 7.8 101 182-285 49-168 (238)
249 cd08254 hydroxyacyl_CoA_DH 6-h 88.1 2.2 4.9E-05 40.0 8.0 90 182-283 166-263 (338)
250 COG0030 KsgA Dimethyladenosine 86.5 1.7 3.7E-05 41.7 6.2 63 182-250 31-102 (259)
251 KOG0820 Ribosomal RNA adenine 86.1 1.5 3.4E-05 42.7 5.6 112 182-296 59-192 (315)
252 PF04816 DUF633: Family of unk 85.9 9.1 0.0002 35.3 10.5 114 185-305 1-122 (205)
253 KOG2539 Mitochondrial/chloropl 85.0 2.5 5.4E-05 43.9 6.8 99 182-285 201-317 (491)
254 COG0742 N6-adenine-specific me 84.8 2.2 4.8E-05 39.1 5.8 100 181-286 43-157 (187)
255 KOG4589 Cell division protein 84.4 4.2 9.1E-05 37.9 7.4 132 182-322 70-226 (232)
256 PF03492 Methyltransf_7: SAM d 84.4 2.5 5.4E-05 41.7 6.4 17 240-256 103-120 (334)
257 PF01555 N6_N4_Mtase: DNA meth 84.2 0.76 1.7E-05 40.7 2.5 23 262-284 35-57 (231)
258 KOG3420 Predicted RNA methylas 81.7 4.8 0.0001 36.2 6.4 92 177-271 44-144 (185)
259 PF11899 DUF3419: Protein of u 81.3 1.4 3.1E-05 44.5 3.4 46 239-285 290-336 (380)
260 cd08283 FDH_like_1 Glutathione 81.2 3.4 7.5E-05 40.6 6.1 100 182-283 185-306 (386)
261 PF00398 RrnaAD: Ribosomal RNA 81.0 1.3 2.8E-05 41.9 2.8 41 181-224 30-71 (262)
262 PRK00517 prmA ribosomal protei 79.6 2 4.4E-05 40.1 3.6 41 13-70 197-237 (250)
263 COG2520 Predicted methyltransf 78.5 5.3 0.00012 39.9 6.4 109 182-300 189-313 (341)
264 COG1064 AdhP Zn-dependent alco 78.0 5.7 0.00012 39.7 6.4 91 182-285 167-261 (339)
265 PF14740 DUF4471: Domain of un 77.8 3.8 8.3E-05 40.0 5.0 56 239-303 218-285 (289)
266 PF06859 Bin3: Bicoid-interact 76.2 0.79 1.7E-05 38.7 -0.1 19 16-36 31-49 (110)
267 PF06962 rRNA_methylase: Putat 75.6 12 0.00027 32.8 7.1 111 209-321 2-140 (140)
268 PF04445 SAM_MT: Putative SAM- 75.6 3.6 7.8E-05 39.0 4.0 100 154-256 44-164 (234)
269 PRK15001 SAM-dependent 23S rib 72.7 13 0.00028 37.6 7.5 93 184-285 47-144 (378)
270 COG4262 Predicted spermidine s 72.1 10 0.00022 38.8 6.4 127 153-285 257-409 (508)
271 KOG1596 Fibrillarin and relate 70.6 10 0.00022 36.8 5.7 94 182-285 157-263 (317)
272 cd08245 CAD Cinnamyl alcohol d 69.8 23 0.0005 33.3 8.2 91 182-283 163-256 (330)
273 cd00315 Cyt_C5_DNA_methylase C 68.5 16 0.00034 34.9 6.8 63 184-250 2-69 (275)
274 KOG2198 tRNA cytosine-5-methyl 68.5 39 0.00086 34.3 9.7 129 177-305 151-326 (375)
275 PRK01747 mnmC bifunctional tRN 68.5 19 0.00041 38.5 8.0 44 242-286 165-209 (662)
276 TIGR00027 mthyl_TIGR00027 meth 68.3 17 0.00038 34.5 6.9 100 181-283 81-197 (260)
277 COG0116 Predicted N6-adenine-s 68.3 36 0.00078 34.6 9.4 109 182-290 192-351 (381)
278 KOG2187 tRNA uracil-5-methyltr 67.9 37 0.0008 35.9 9.6 67 151-223 355-423 (534)
279 PF00145 DNA_methylase: C-5 cy 67.6 41 0.00089 31.4 9.3 93 184-279 2-107 (335)
280 PHA01634 hypothetical protein 67.6 9.3 0.0002 33.6 4.4 48 159-211 11-59 (156)
281 cd08230 glucose_DH Glucose deh 67.3 32 0.0007 33.1 8.7 91 182-283 173-269 (355)
282 PRK10742 putative methyltransf 67.3 33 0.00073 32.9 8.6 89 177-271 84-189 (250)
283 PRK11088 rrmA 23S rRNA methylt 66.9 2 4.3E-05 40.6 0.2 21 12-32 164-184 (272)
284 COG4076 Predicted RNA methylas 66.1 12 0.00026 35.1 5.1 94 183-281 34-133 (252)
285 KOG1099 SAM-dependent methyltr 65.6 0.79 1.7E-05 43.8 -2.7 113 182-298 42-183 (294)
286 PLN02232 ubiquinone biosynthes 65.4 1.9 4.2E-05 37.5 -0.1 16 12-27 64-79 (160)
287 PRK06274 indolepyruvate oxidor 62.9 26 0.00057 31.4 6.7 37 237-284 59-97 (197)
288 PF00107 ADH_zinc_N: Zinc-bind 62.5 8.8 0.00019 31.1 3.3 83 191-285 1-91 (130)
289 cd05188 MDR Medium chain reduc 62.3 44 0.00096 29.7 8.1 92 182-285 135-234 (271)
290 KOG1562 Spermidine synthase [A 62.1 22 0.00049 35.2 6.4 113 180-294 120-252 (337)
291 cd08234 threonine_DH_like L-th 61.9 32 0.0007 32.3 7.5 90 182-283 160-257 (334)
292 PF06080 DUF938: Protein of un 61.5 17 0.00037 33.8 5.3 66 12-78 124-204 (204)
293 PF01795 Methyltransf_5: MraW 60.0 18 0.0004 35.7 5.5 77 182-280 21-99 (310)
294 TIGR00675 dcm DNA-methyltransf 59.3 53 0.0012 31.9 8.6 22 185-206 1-22 (315)
295 TIGR00006 S-adenosyl-methyltra 57.9 27 0.00059 34.4 6.3 42 182-224 21-63 (305)
296 PF01209 Ubie_methyltran: ubiE 57.9 2.5 5.3E-05 39.6 -0.9 17 11-27 135-151 (233)
297 PRK07417 arogenate dehydrogena 57.3 39 0.00084 32.0 7.1 82 185-279 3-87 (279)
298 PF12692 Methyltransf_17: S-ad 57.1 3.5 7.6E-05 36.8 -0.0 102 184-286 31-137 (160)
299 PF07091 FmrO: Ribosomal RNA m 56.8 18 0.00039 34.8 4.7 128 170-305 96-242 (251)
300 PF05430 Methyltransf_30: S-ad 56.4 26 0.00057 29.8 5.2 75 242-322 49-124 (124)
301 TIGR00477 tehB tellurite resis 56.1 7.5 0.00016 34.9 2.0 63 11-82 115-180 (195)
302 PF10354 DUF2431: Domain of un 55.9 55 0.0012 29.1 7.4 95 188-284 3-126 (166)
303 COG0270 Dcm Site-specific DNA 55.7 1E+02 0.0022 30.2 9.9 33 182-214 3-35 (328)
304 PLN02233 ubiquinone biosynthes 54.3 3.9 8.5E-05 38.6 -0.2 18 11-28 164-181 (261)
305 PRK10258 biotin biosynthesis p 53.6 1.6 3.4E-05 40.4 -3.0 28 4-31 115-142 (251)
306 PTZ00146 fibrillarin; Provisio 53.5 4.5 9.7E-05 39.6 0.1 19 10-28 218-236 (293)
307 PF02153 PDH: Prephenate dehyd 52.1 28 0.00061 32.8 5.2 95 195-300 1-99 (258)
308 cd08261 Zn_ADH7 Alcohol dehydr 52.0 41 0.0009 31.8 6.4 91 182-283 160-258 (337)
309 PF07757 AdoMet_MTase: Predict 51.8 10 0.00022 32.1 1.9 24 181-204 58-81 (112)
310 COG0863 DNA modification methy 51.1 37 0.0008 31.7 5.9 43 262-304 78-120 (302)
311 COG0287 TyrA Prephenate dehydr 50.8 42 0.0009 32.5 6.2 110 183-303 4-119 (279)
312 KOG4300 Predicted methyltransf 49.8 3.9 8.5E-05 38.7 -0.9 16 12-27 165-180 (252)
313 KOG2915 tRNA(1-methyladenosine 49.3 1.2E+02 0.0026 30.0 8.9 111 182-303 106-231 (314)
314 PF02254 TrkA_N: TrkA-N domain 48.6 47 0.001 26.4 5.4 88 190-286 4-99 (116)
315 PRK07502 cyclohexadienyl dehyd 48.2 1.1E+02 0.0025 29.1 8.8 93 182-284 6-101 (307)
316 PF04672 Methyltransf_19: S-ad 47.6 25 0.00053 34.1 4.1 38 246-283 153-190 (267)
317 PF06325 PrmA: Ribosomal prote 47.6 9.9 0.00022 37.1 1.4 18 15-32 245-262 (295)
318 PRK00107 gidB 16S rRNA methylt 47.6 21 0.00045 32.3 3.4 38 14-69 130-167 (187)
319 PRK09424 pntA NAD(P) transhydr 47.5 67 0.0014 33.9 7.5 97 181-283 164-285 (509)
320 TIGR03201 dearomat_had 6-hydro 47.4 60 0.0013 31.2 6.8 89 182-283 167-272 (349)
321 PF05148 Methyltransf_8: Hypot 47.1 2.4 5.2E-05 39.8 -2.8 55 11-80 140-199 (219)
322 COG2384 Predicted SAM-dependen 47.0 2.6E+02 0.0057 26.6 11.2 133 185-323 20-160 (226)
323 PF13489 Methyltransf_23: Meth 46.9 4.4 9.5E-05 33.8 -1.0 22 11-32 97-118 (161)
324 PF01234 NNMT_PNMT_TEMT: NNMT/ 46.5 7.4 0.00016 37.3 0.4 13 17-29 187-199 (256)
325 PRK11207 tellurite resistance 46.5 12 0.00026 33.6 1.7 62 11-81 116-180 (197)
326 PRK00121 trmB tRNA (guanine-N( 45.6 7.4 0.00016 35.2 0.2 22 11-32 138-159 (202)
327 PRK03659 glutathione-regulated 45.6 51 0.0011 35.1 6.5 88 190-286 406-501 (601)
328 COG1063 Tdh Threonine dehydrog 45.6 66 0.0014 31.6 6.9 89 184-283 171-269 (350)
329 PF01861 DUF43: Protein of unk 45.3 2.9E+02 0.0062 26.6 11.6 113 182-302 45-173 (243)
330 cd08255 2-desacetyl-2-hydroxye 45.2 1.1E+02 0.0024 27.9 7.9 88 182-283 98-190 (277)
331 TIGR02822 adh_fam_2 zinc-bindi 44.1 95 0.0021 29.8 7.6 87 182-284 166-255 (329)
332 PRK07066 3-hydroxybutyryl-CoA 42.7 85 0.0018 31.0 7.1 99 181-286 6-121 (321)
333 PLN02244 tocopherol O-methyltr 42.5 4.6 9.9E-05 39.7 -1.8 20 11-30 205-224 (340)
334 PRK01683 trans-aconitate 2-met 42.5 3.8 8.3E-05 37.9 -2.3 27 4-30 105-131 (258)
335 smart00828 PKS_MT Methyltransf 42.4 8 0.00017 34.8 -0.1 19 12-30 87-105 (224)
336 COG0373 HemA Glutamyl-tRNA red 42.2 57 0.0012 33.5 6.0 88 181-271 177-267 (414)
337 PRK06522 2-dehydropantoate 2-r 42.1 1.7E+02 0.0037 27.3 8.9 102 184-294 2-112 (304)
338 cd08232 idonate-5-DH L-idonate 41.8 1.1E+02 0.0024 28.9 7.6 91 181-283 165-262 (339)
339 PRK08287 cobalt-precorrin-6Y C 41.7 26 0.00057 30.8 3.1 40 13-69 115-154 (187)
340 PRK04266 fibrillarin; Provisio 41.6 8.5 0.00019 35.9 -0.0 17 12-28 159-175 (226)
341 COG2264 PrmA Ribosomal protein 41.4 12 0.00026 36.9 0.9 16 15-30 249-264 (300)
342 PF03446 NAD_binding_2: NAD bi 41.4 27 0.00058 30.3 3.1 96 188-296 7-109 (163)
343 PTZ00098 phosphoethanolamine N 41.2 8.4 0.00018 36.4 -0.2 20 12-31 139-158 (263)
344 TIGR02175 PorC_KorC 2-oxoacid: 40.9 79 0.0017 28.0 6.1 35 239-284 61-98 (177)
345 KOG0822 Protein kinase inhibit 40.6 92 0.002 33.4 7.2 130 150-283 332-478 (649)
346 PRK11873 arsM arsenite S-adeno 40.1 8.8 0.00019 35.9 -0.2 21 11-31 165-185 (272)
347 KOG3045 Predicted RNA methylas 39.6 4.5 9.7E-05 39.5 -2.3 56 11-81 246-306 (325)
348 PRK09880 L-idonate 5-dehydroge 39.2 84 0.0018 30.1 6.4 91 182-283 170-266 (343)
349 TIGR00138 gidB 16S rRNA methyl 38.2 20 0.00043 32.1 1.7 18 14-31 127-144 (181)
350 PF02558 ApbA: Ketopantoate re 38.2 1.2E+02 0.0026 25.3 6.5 99 187-295 3-114 (151)
351 cd08236 sugar_DH NAD(P)-depend 37.6 85 0.0019 29.7 6.1 91 182-283 160-258 (343)
352 PRK10669 putative cation:proto 37.4 95 0.0021 32.5 6.9 88 190-286 423-518 (558)
353 TIGR00740 methyltransferase, p 37.3 11 0.00024 34.6 -0.0 21 10-30 142-162 (239)
354 COG0275 Predicted S-adenosylme 37.2 87 0.0019 31.1 6.1 57 182-250 24-81 (314)
355 PRK12921 2-dehydropantoate 2-r 36.9 1.6E+02 0.0034 27.6 7.8 102 184-294 2-114 (305)
356 KOG2899 Predicted methyltransf 36.0 15 0.00033 35.5 0.7 18 14-31 194-211 (288)
357 TIGR02072 BioC biotin biosynth 35.6 13 0.00027 33.2 0.0 20 11-30 117-136 (240)
358 PRK07402 precorrin-6B methylas 35.5 23 0.00051 31.4 1.8 20 12-31 125-144 (196)
359 TIGR00872 gnd_rel 6-phosphoglu 34.8 96 0.0021 29.7 6.0 86 185-281 3-91 (298)
360 cd08295 double_bond_reductase_ 34.8 1.2E+02 0.0026 28.8 6.7 90 182-283 152-251 (338)
361 KOG2798 Putative trehalase [Ca 34.5 38 0.00082 34.0 3.2 53 17-70 284-336 (369)
362 COG2226 UbiE Methylase involve 34.4 8.4 0.00018 36.6 -1.3 22 11-32 138-161 (238)
363 TIGR02825 B4_12hDH leukotriene 34.3 1.4E+02 0.0029 28.2 6.9 90 182-283 139-237 (325)
364 cd05278 FDH_like Formaldehyde 34.3 88 0.0019 29.5 5.6 90 182-283 168-267 (347)
365 PF03514 GRAS: GRAS domain fam 34.3 1.4E+02 0.0029 30.1 7.2 107 177-283 106-244 (374)
366 PRK08300 acetaldehyde dehydrog 34.2 1.4E+02 0.0031 29.4 7.1 92 184-285 6-102 (302)
367 COG3414 SgaB Phosphotransferas 34.0 1.1E+02 0.0023 25.0 5.2 45 237-295 43-91 (93)
368 KOG1975 mRNA cap methyltransfe 33.6 21 0.00046 35.9 1.2 18 15-32 223-240 (389)
369 cd08294 leukotriene_B4_DH_like 33.5 1.3E+02 0.0028 28.1 6.5 90 182-283 144-241 (329)
370 PRK09489 rsmC 16S ribosomal RN 32.8 2.2E+02 0.0049 28.2 8.3 105 182-297 20-127 (342)
371 PLN02353 probable UDP-glucose 32.7 74 0.0016 33.1 5.1 33 262-294 106-140 (473)
372 PRK08534 pyruvate ferredoxin o 32.7 1.3E+02 0.0028 26.8 6.1 34 240-284 62-98 (181)
373 PRK08268 3-hydroxy-acyl-CoA de 32.6 99 0.0021 32.3 6.1 93 181-281 6-120 (507)
374 PRK08507 prephenate dehydrogen 32.4 1.5E+02 0.0033 27.8 6.8 83 185-280 3-88 (275)
375 TIGR00446 nop2p NOL1/NOP2/sun 32.2 46 0.001 31.4 3.3 22 12-33 182-203 (264)
376 COG2871 NqrF Na+-transporting 31.7 36 0.00077 33.9 2.4 47 19-74 164-210 (410)
377 COG4627 Uncharacterized protei 31.6 24 0.00053 32.0 1.2 25 12-36 69-93 (185)
378 PF02636 Methyltransf_28: Puta 31.4 33 0.00071 32.0 2.1 20 182-201 19-38 (252)
379 PLN03154 putative allyl alcoho 31.3 1.4E+02 0.0031 28.8 6.7 89 182-283 159-258 (348)
380 cd08279 Zn_ADH_class_III Class 30.8 1.4E+02 0.003 28.8 6.4 91 182-283 183-282 (363)
381 PF01558 POR: Pyruvate ferredo 30.3 1.7E+02 0.0037 25.4 6.4 35 240-285 53-88 (173)
382 TIGR00497 hsdM type I restrict 30.2 2.4E+02 0.0053 29.2 8.5 100 182-281 218-353 (501)
383 KOG1271 Methyltransferases [Ge 30.2 20 0.00043 33.5 0.4 21 10-30 162-182 (227)
384 cd00401 AdoHcyase S-adenosyl-L 30.0 1.6E+02 0.0036 30.1 7.0 86 182-285 202-291 (413)
385 PRK14103 trans-aconitate 2-met 29.9 6.5 0.00014 36.5 -2.9 21 10-30 107-127 (255)
386 PRK08317 hypothetical protein; 29.7 16 0.00036 32.3 -0.2 19 12-30 107-125 (241)
387 PRK11524 putative methyltransf 29.6 74 0.0016 30.4 4.2 41 181-224 208-249 (284)
388 PRK14028 pyruvate ferredoxin o 29.2 1E+02 0.0023 29.7 5.3 37 239-285 62-101 (312)
389 PRK11064 wecC UDP-N-acetyl-D-m 29.1 1.7E+02 0.0036 29.7 6.9 102 183-293 4-131 (415)
390 TIGR00692 tdh L-threonine 3-de 29.0 1.7E+02 0.0036 27.8 6.6 92 182-284 162-262 (340)
391 PF01555 N6_N4_Mtase: DNA meth 29.0 70 0.0015 28.0 3.8 38 182-222 192-230 (231)
392 TIGR00452 methyltransferase, p 28.6 13 0.00029 36.5 -1.1 22 11-32 207-228 (314)
393 PF05206 TRM13: Methyltransfer 28.5 47 0.001 31.8 2.7 20 182-201 19-38 (259)
394 TIGR00563 rsmB ribosomal RNA s 28.4 26 0.00057 35.4 1.0 23 11-33 350-372 (426)
395 PF04989 CmcI: Cephalosporin h 28.2 53 0.0012 30.6 2.9 26 260-285 124-149 (206)
396 PLN02396 hexaprenyldihydroxybe 28.0 19 0.00041 35.5 -0.1 20 11-30 217-236 (322)
397 cd08241 QOR1 Quinone oxidoredu 28.0 1.7E+02 0.0038 26.5 6.3 90 182-283 140-238 (323)
398 TIGR02441 fa_ox_alpha_mit fatt 27.9 1.4E+02 0.003 32.8 6.5 111 180-294 333-461 (737)
399 TIGR00537 hemK_rel_arch HemK-r 27.8 13 0.00028 32.6 -1.2 21 11-31 122-142 (179)
400 PRK11188 rrmJ 23S rRNA methylt 27.6 14 0.00029 33.8 -1.1 18 11-28 147-164 (209)
401 PRK03562 glutathione-regulated 27.2 1.5E+02 0.0031 31.9 6.3 92 183-285 401-500 (621)
402 PRK15451 tRNA cmo(5)U34 methyl 27.2 20 0.00044 33.3 -0.0 19 11-29 146-164 (247)
403 PRK00377 cbiT cobalt-precorrin 27.2 35 0.00075 30.5 1.5 18 14-31 130-147 (198)
404 PF12147 Methyltransf_20: Puta 26.9 32 0.00069 34.0 1.2 15 17-31 237-251 (311)
405 KOG2651 rRNA adenine N-6-methy 26.9 85 0.0018 32.4 4.2 31 181-211 153-184 (476)
406 TIGR02752 MenG_heptapren 2-hep 26.9 21 0.00045 32.3 -0.1 18 12-29 134-151 (231)
407 PLN02256 arogenate dehydrogena 26.8 2E+02 0.0044 27.9 6.8 102 180-295 34-141 (304)
408 cd05285 sorbitol_DH Sorbitol d 26.7 2.8E+02 0.006 26.3 7.7 91 182-283 163-265 (343)
409 cd08267 MDR1 Medium chain dehy 26.2 4.9E+02 0.011 23.7 9.0 91 182-283 144-240 (319)
410 PRK11705 cyclopropane fatty ac 25.9 22 0.00048 35.7 -0.1 20 11-30 249-268 (383)
411 TIGR00006 S-adenosyl-methyltra 25.8 92 0.002 30.7 4.2 30 261-290 218-247 (305)
412 PRK13699 putative methylase; P 25.4 1E+02 0.0022 28.7 4.2 40 182-224 164-204 (227)
413 COG1565 Uncharacterized conser 25.3 1.8E+02 0.004 29.5 6.2 97 160-257 55-163 (370)
414 PRK11036 putative S-adenosyl-L 25.2 23 0.0005 32.9 -0.1 19 12-30 132-150 (255)
415 PRK06035 3-hydroxyacyl-CoA deh 25.2 3.3E+02 0.0071 25.8 7.8 104 182-294 3-132 (291)
416 PF03721 UDPG_MGDP_dh_N: UDP-g 25.0 1.9E+02 0.0042 25.9 5.9 106 187-296 5-136 (185)
417 cd08293 PTGR2 Prostaglandin re 24.9 1.9E+02 0.0041 27.3 6.1 95 177-283 150-254 (345)
418 PRK14901 16S rRNA methyltransf 24.8 34 0.00074 34.7 1.1 21 12-32 367-387 (434)
419 cd08263 Zn_ADH10 Alcohol dehyd 24.6 2E+02 0.0043 27.7 6.3 33 242-283 255-287 (367)
420 TIGR00091 tRNA (guanine-N(7)-) 24.4 41 0.00088 30.1 1.4 22 11-32 114-135 (194)
421 PRK15068 tRNA mo(5)U34 methylt 24.2 15 0.00032 36.1 -1.7 20 11-30 208-227 (322)
422 PF04563 RNA_pol_Rpb2_1: RNA p 24.1 32 0.00069 31.2 0.6 11 21-31 130-140 (203)
423 KOG0024 Sorbitol dehydrogenase 23.7 3.1E+02 0.0066 27.8 7.3 93 182-283 170-273 (354)
424 PRK11730 fadB multifunctional 23.7 1.7E+02 0.0036 32.0 6.1 109 181-293 312-438 (715)
425 cd05281 TDH Threonine dehydrog 23.5 5E+02 0.011 24.5 8.8 91 182-284 164-263 (341)
426 PRK08655 prephenate dehydrogen 23.5 3.8E+02 0.0082 27.4 8.3 100 184-295 2-106 (437)
427 PF10237 N6-adenineMlase: Prob 23.4 1.4E+02 0.0031 26.6 4.6 52 241-295 84-135 (162)
428 cd08285 NADP_ADH NADP(H)-depen 23.3 1.7E+02 0.0036 27.9 5.5 91 182-283 167-266 (351)
429 TIGR02817 adh_fam_1 zinc-bindi 23.1 3E+02 0.0065 25.7 7.1 91 182-283 149-247 (336)
430 cd08289 MDR_yhfp_like Yhfp put 22.7 2.7E+02 0.0059 25.8 6.7 90 182-283 147-243 (326)
431 COG3315 O-Methyltransferase in 22.7 1.2E+02 0.0026 29.6 4.3 103 177-283 89-209 (297)
432 PRK07819 3-hydroxybutyryl-CoA 22.5 2.1E+02 0.0045 27.4 5.9 105 182-292 5-130 (286)
433 TIGR03451 mycoS_dep_FDH mycoth 22.4 1.9E+02 0.0042 27.8 5.7 91 182-283 177-276 (358)
434 TIGR00745 apbA_panE 2-dehydrop 22.4 3.7E+02 0.0081 24.8 7.5 94 192-294 2-105 (293)
435 PRK11154 fadJ multifunctional 22.3 1.9E+02 0.004 31.6 6.1 111 180-293 307-435 (708)
436 PRK06545 prephenate dehydrogen 22.3 3.8E+02 0.0082 26.4 7.9 101 184-294 2-108 (359)
437 cd08243 quinone_oxidoreductase 22.2 3.2E+02 0.0069 24.9 6.9 90 182-283 143-238 (320)
438 cd02173 ECT CTP:phosphoethanol 21.8 65 0.0014 28.2 2.1 30 240-283 7-36 (152)
439 TIGR03534 RF_mod_PrmC protein- 21.6 1.1E+02 0.0023 27.7 3.6 18 12-29 200-217 (251)
440 KOG2920 Predicted methyltransf 21.4 47 0.001 32.5 1.2 40 243-285 196-236 (282)
441 PF03291 Pox_MCEL: mRNA cappin 21.4 25 0.00054 34.8 -0.7 16 15-30 172-187 (331)
442 PRK10901 16S rRNA methyltransf 21.2 44 0.00095 33.9 1.0 21 12-32 355-375 (427)
443 PLN02490 MPBQ/MSBQ methyltrans 21.0 30 0.00065 34.5 -0.2 19 12-30 198-216 (340)
444 PF07101 DUF1363: Protein of u 20.8 36 0.00077 28.5 0.2 14 185-198 6-19 (124)
445 PRK12335 tellurite resistance 20.6 32 0.0007 32.7 -0.1 17 11-27 205-221 (287)
446 TIGR01692 HIBADH 3-hydroxyisob 20.6 3.6E+02 0.0078 25.5 7.1 96 188-296 2-105 (288)
447 PF07927 YcfA: YcfA-like prote 20.5 1.8E+02 0.0039 20.5 3.9 31 52-82 1-31 (56)
448 PRK00050 16S rRNA m(4)C1402 me 20.3 1.4E+02 0.003 29.3 4.2 30 261-290 214-243 (296)
449 cd08910 START_STARD2-like Lipi 20.2 84 0.0018 28.7 2.6 40 44-83 6-46 (207)
450 PRK05708 2-dehydropantoate 2-r 20.2 4.7E+02 0.01 25.1 7.9 102 184-294 4-116 (305)
451 COG2933 Predicted SAM-dependen 20.2 1.1E+02 0.0024 30.2 3.5 66 182-252 212-279 (358)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=4.3e-106 Score=805.32 Aligned_cols=312 Identities=53% Similarity=0.975 Sum_probs=301.8
Q ss_pred CccccccCcEEEEEeeceecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeeeecceEEEeecC
Q 020011 1 MMNIFVSGGIYLLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDIAVWQKLS 80 (332)
Q Consensus 1 ~~~w~~~~g~~l~E~dRvLRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~~~~aiw~Kp~ 80 (332)
.|+|+++||+||+|||||||||||||||||||| ++++++++++|++|++||++|||++|++++|+||||||.
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~ 262 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPT 262 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccC
Confidence 379999999999999999999999999999996 567889999999999999999999999999999999999
Q ss_pred CChhccccCCCCCCCCCCCCCCCCCCccccCCCCcccCCCCCccccccCCCCCCCccCCCCCccccc--ccccccccccc
Q 020011 81 DSSCYNKLSNPDVYPPKCDDSLEPDSAWYTPLRPCVVVPRPNLKKSVLESMPKWPERLHVAPERISD--IHGGSASAFKH 158 (332)
Q Consensus 81 ~~~cy~~r~~~~~~p~~C~~~~~~d~~Wy~~~~~Cl~p~P~~~~~~~~~~p~~WP~rl~~~p~rl~~--~~g~~~~~F~~ 158 (332)
||+||.+|+ ..+.||+|++++|||++||++|++||+|+|+...+.+++++.+||+||+++|+||++ ++|.+.+.|.+
T Consensus 263 ~~~Cy~~r~-~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~ 341 (506)
T PF03141_consen 263 NNSCYQKRK-PGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKE 341 (506)
T ss_pred Cchhhhhcc-CCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHH
Confidence 999999998 569999999899999999999999999999987788999999999999999999996 67889999999
Q ss_pred chhhHHHHHHHHHhhcC-CCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccC
Q 020011 159 DDSKWNVRVKHYKKLLP-ALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAF 237 (332)
Q Consensus 159 d~~~W~~~v~~y~~~l~-~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~ 237 (332)
|+++|+.+|++|+.+++ .++++++||||||++|+|||||+|++++||||||+|+..+++|.++++|||||+||||||+|
T Consensus 342 Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~f 421 (506)
T PF03141_consen 342 DTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAF 421 (506)
T ss_pred HHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhcc
Confidence 99999999999998875 78999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeeccccccc-ccceE
Q 020011 238 STYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKEDTEYGV-EKEKL 316 (332)
Q Consensus 238 ~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~~~e~~~-~~e~~ 316 (332)
+||||||||||++++|+++.++|+++++|.||||||||||++||+|..+++++|++|+++|||++.++++|+|+ ++|+|
T Consensus 422 sTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~Eki 501 (506)
T PF03141_consen 422 STYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKI 501 (506)
T ss_pred CCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEEEe
Q 020011 317 LLCQK 321 (332)
Q Consensus 317 li~~K 321 (332)
|||||
T Consensus 502 L~~~K 506 (506)
T PF03141_consen 502 LICQK 506 (506)
T ss_pred EEEEC
Confidence 99998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=5.4e-40 Score=329.64 Aligned_cols=208 Identities=20% Similarity=0.351 Sum_probs=176.6
Q ss_pred CCCCCCCCCCCccccCCCCcccCCCCCccccccCCCCCCCccCC------CCCcccccccc--------ccccccccchh
Q 020011 96 PKCDDSLEPDSAWYTPLRPCVVVPRPNLKKSVLESMPKWPERLH------VAPERISDIHG--------GSASAFKHDDS 161 (332)
Q Consensus 96 ~~C~~~~~~d~~Wy~~~~~Cl~p~P~~~~~~~~~~p~~WP~rl~------~~p~rl~~~~g--------~~~~~F~~d~~ 161 (332)
.+|... .++..||+|+|.+|+. |++||+|++ +|+++|++.|+ +....|+.+++
T Consensus 26 RhCP~~--------~~~~~CLVp~P~gYk~-----P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt 92 (506)
T PF03141_consen 26 RHCPPP--------EERLRCLVPPPKGYKT-----PIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGT 92 (506)
T ss_pred ccCcCC--------CCCCccccCCCccCCC-----CCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCc
Confidence 379764 3588999999999998 999999995 67788887665 56788999999
Q ss_pred hHHHHHHHHHhh----cCC-CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccc
Q 020011 162 KWNVRVKHYKKL----LPA-LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCE 235 (332)
Q Consensus 162 ~W~~~v~~y~~~----l~~-l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e 235 (332)
+|.+.+.+|.+. ++. ...+.+|.+||+|||+|+|||+|.+++|.+|+++|.|. +.++++|+|||+++++.....
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 999999999853 442 25578999999999999999999999999999999999 899999999999887766556
Q ss_pred cCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh----------hHHHHHHHHHhcCcceeee
Q 020011 236 AFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS----------YFIDAVATIAKGMKWSCHK 304 (332)
Q Consensus 236 ~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----------~~~~~i~~i~~~l~W~~~~ 304 (332)
..+||| ++||+|||+..+..+.... ..+|.|+||||||||+|+++.++ ..+++|++++++|||+...
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred ccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 678999 9999999996665543211 24999999999999999999875 5689999999999999988
Q ss_pred cccccccccceEEEEEeccCC
Q 020011 305 EDTEYGVEKEKLLLCQKKLWY 325 (332)
Q Consensus 305 ~~~e~~~~~e~~li~~K~~w~ 325 (332)
. +.++.||||+.-.
T Consensus 251 ~-------~~~~aIwqKp~~~ 264 (506)
T PF03141_consen 251 E-------KGDTAIWQKPTNN 264 (506)
T ss_pred e-------eCCEEEEeccCCc
Confidence 7 3569999999754
No 3
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=3.8e-16 Score=120.88 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=69.9
Q ss_pred EEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCccc---ccccccccCCCCC-CccceeEehhhhcccccc
Q 020011 186 MDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIG---TYHDWCEAFSTYP-RTYDLLHLDGLFTAESHR 259 (332)
Q Consensus 186 LD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGlig---~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~ 259 (332)
||+|||+|.++..|+++ +. +++++|. +++++.+.++.... ..+.-.+. .+|| ++||+|++.++|+|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAED-LPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTS-SSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHh-Cccccccccccccccceeec---
Confidence 89999999999999999 44 7788888 88899998875422 11111122 3788 999999999999998
Q ss_pred CCHHHHHHHHHhhhcCCcEEEE
Q 020011 260 CDMKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 260 c~~~~iL~EmdRVLRPGG~lii 281 (332)
.+...++.|+.|+|||||+++|
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 3578999999999999999986
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=2.5e-14 Score=134.13 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcc----c--cccc
Q 020011 160 DSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLI----G--TYHD 232 (332)
Q Consensus 160 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGli----g--~~~d 232 (332)
...|++..-.- + .+. ...+|||+|||+|-+|..+++.-- .-.|+++|. ++||..+.+|-.- + .++.
T Consensus 36 ~~~Wr~~~i~~---~-~~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 36 HRLWRRALISL---L-GIK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred hHHHHHHHHHh---h-CCC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 35677655322 1 122 467899999999999999988642 347899999 9999999999542 1 1121
Q ss_pred ccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 233 WCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 233 ~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
-++ -+||| +|||+|.++..|.+++ +++.+|.||.|||||||.+++.+..
T Consensus 109 dAe-~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 109 DAE-NLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred chh-hCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 123 35799 9999999999999986 5889999999999999999998743
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.50 E-value=5.5e-14 Score=131.02 Aligned_cols=115 Identities=20% Similarity=0.195 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC----cc--ccccc
Q 020011 160 DSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG----LI--GTYHD 232 (332)
Q Consensus 160 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG----li--g~~~d 232 (332)
.+.|++.+..... .. ...+|||+|||+|.++..|+++-.-...|+++|. ++||+.+.+|. .. -....
T Consensus 32 ~~~wr~~~~~~~~----~~--~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIKLLG----LR--PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHHHHT--------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHhccC----CC--CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 4678887755431 22 2458999999999999998875221236889999 99999998873 21 11111
Q ss_pred ccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 233 WCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 233 ~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
-++ -+||| ++||+|.|+..|++++ +...+|.||.|||||||.|+|-+.
T Consensus 106 da~-~lp~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 106 DAE-DLPFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp BTT-B--S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHH-HhcCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeec
Confidence 122 25788 9999999999999886 478999999999999999999873
No 6
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.48 E-value=5e-14 Score=119.46 Aligned_cols=95 Identities=19% Similarity=0.374 Sum_probs=75.0
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC-CccceeEehhhhccccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESH 258 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~ 258 (332)
...+|||+|||+|.++..|++.+. .++++|. +.+++. +......++ .....++ ++||+|+|+++|+|+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhccc
Confidence 367899999999999999999887 6788888 777766 222221111 1123355 99999999999999974
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
...+|.++.|+|||||++++.++..
T Consensus 94 ---~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 94 ---PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ---HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 7899999999999999999999863
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.46 E-value=2.8e-13 Score=127.72 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=75.4
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCc---------ccccccccccCCCCC-CccceeEe
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGL---------IGTYHDWCEAFSTYP-RTYDLLHL 249 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGl---------ig~~~d~~e~~~~yp-~sFDlVh~ 249 (332)
..+|||+|||+|.++..|+++ +.- -+|+++|. ++|++.|.+|.- +-....-++. .+|+ ++||+|++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCCCEeEEEE
Confidence 568999999999999988875 321 16788999 999999976631 1111111122 4688 89999999
Q ss_pred hhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 250 DGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 250 s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+.+|+|++ +...+|.|+.|+|||||.|++.+-
T Consensus 152 ~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999986 468999999999999999999873
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=6.9e-13 Score=123.65 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=79.0
Q ss_pred cCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC-CccceeEehh
Q 020011 174 LPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDG 251 (332)
Q Consensus 174 l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp-~sFDlVh~s~ 251 (332)
+..+......+|||+|||+|.++.+|+++.. ...|+++|. +.+++.+.++++--...|. +.+ .+ ++||+|+|+.
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~--~~~~~fD~v~~~~ 97 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDV-RDW--KPKPDTDVVVSNA 97 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcCh-hhC--CCCCCceEEEEeh
Confidence 3334444467899999999999999988621 125788999 9999999888642222221 222 24 8999999999
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+|+|++ +...++.++.|+|||||++++..+
T Consensus 98 ~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 98 ALQWVP---EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhhhCC---CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999986 467899999999999999999753
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.41 E-value=4.7e-13 Score=130.44 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=76.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC----cccccccccccC--CCCC-CccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG----LIGTYHDWCEAF--STYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG----lig~~~d~~e~~--~~yp-~sFDlVh~s~vf 253 (332)
..+|||+|||.|.++..|++.+. +|+++|. ++++++|.++. +...+.-.+..+ .+++ ++||+|.|.+||
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 45899999999999999998765 6788999 88999888652 111111111111 2355 899999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+|+.+ ...+|.|+.|+|||||.+++.+..
T Consensus 209 eHv~d---~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 209 EHVAN---PAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HhcCC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99974 679999999999999999998754
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.40 E-value=1.5e-12 Score=120.65 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=76.8
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcc-ccc-ccccccCCCCC-CccceeEehhhhccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLI-GTY-HDWCEAFSTYP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGli-g~~-~d~~e~~~~yp-~sFDlVh~s~vf~h~ 256 (332)
...+|||+|||+|.++..|.+.+. .++++|. +++++.+.++... ... .|. +. .+|+ ++||+|.++.+|++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~-~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ES-LPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-cc-CcCCCCcEEEEEECchhhhc
Confidence 467899999999999999988765 5788888 8999999887531 111 111 22 3577 899999999999886
Q ss_pred cccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
. ++..+|.|+.|+|||||.|+++...
T Consensus 117 ~---d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 117 G---NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred C---CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 5 4789999999999999999998633
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=2.7e-12 Score=119.77 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc---ccccccccCCCCC-CccceeEehh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG---TYHDWCEAFSTYP-RTYDLLHLDG 251 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig---~~~d~~e~~~~yp-~sFDlVh~s~ 251 (332)
...+|||+|||+|.++..|++.+. +|+++|. +++++.|.++ |+.. .++.-.+.+.+++ ++||+|+|+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 356899999999999999999875 6788888 8898888765 3321 1111111233455 8999999999
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+|+|+.+ ...++.++.|+|||||.|++...
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEEEE
Confidence 9999863 57899999999999999988653
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.37 E-value=1e-12 Score=105.98 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCeEEEecCcchHHHHHHhc--CCCeEEEEeecCc-hhhHHHHHhcC----cccccccccccC---CCCCCccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVID--DPLWVMNVVSSYA-ANTLAVVYDRG----LIGTYHDWCEAF---STYPRTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~--~~v~vmnv~p~d~-~~~l~~a~eRG----lig~~~d~~e~~---~~yp~sFDlVh~s~ 251 (332)
..+|||+|||+|.++.+|++ .+. .|+++|. +.+++.+.++- ....++-.+..+ ..++..||+|+++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 46899999999999999999 565 5788888 88888887774 211111111222 33447799999999
Q ss_pred -hhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 252 -LFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 252 -vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
.++++.+..+...++.++.+.|||||+++++++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 455443323456799999999999999999863
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.35 E-value=3.9e-12 Score=124.24 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=73.7
Q ss_pred CCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccc---cc-ccccccCCCCC-CccceeE
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIG---TY-HDWCEAFSTYP-RTYDLLH 248 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig---~~-~d~~e~~~~yp-~sFDlVh 248 (332)
....+|||+|||+|+++.+|+++ +. +|+++|. +.+++.+.++ |+.. .. .|. . -.+|+ ++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~-~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-L-NQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-c-cCCCCCCCccEEE
Confidence 34578999999999999999886 44 6677888 7777766543 4421 11 111 1 13677 9999999
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|..+++|+++ ...+|.|+.|+|||||.|+|.+
T Consensus 192 s~~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999864 6789999999999999999975
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=2.4e-12 Score=116.09 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc-CCCCCCccceeEehhhhcc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA-FSTYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~-~~~yp~sFDlVh~s~vf~h 255 (332)
..+|||+|||+|.++.+|++++. .|+++|. +.+++.+.++ |+. .....++. ..+++.+||+|+|+.+|+|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccccCCCCEEEEeccccc
Confidence 45899999999999999999875 5788888 7788766543 432 11111111 1234578999999999998
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEE
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVR 282 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~ 282 (332)
+.. .+...++.++.|+|||||++++.
T Consensus 107 ~~~-~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQA-GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 863 46778999999999999996554
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.35 E-value=3e-12 Score=120.84 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=75.9
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccc-cccccccc--CCCCC-CccceeEehhhhcc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIG-TYHDWCEA--FSTYP-RTYDLLHLDGLFTA 255 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig-~~~d~~e~--~~~yp-~sFDlVh~s~vf~h 255 (332)
...+|||+|||+|+++.+|++.. ...|+++|. +++++.+.++.... .+.-.+.. -.+|| ++||+|++..+|.|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 35689999999999999997642 126788888 88999888763211 01000111 13588 89999999999999
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
++. .+...++.|+.|+|||||+|++.+.
T Consensus 130 ~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 130 LSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 752 3578899999999999999999875
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=9.5e-12 Score=115.08 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCcccccccccccCC
Q 020011 161 SKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFS 238 (332)
Q Consensus 161 ~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~ 238 (332)
..|+..+....... +.. ..+|||+|||+|.++..|++. +. +|+++|. ++|++.+.++.- ..+.-++. +
T Consensus 35 ~~wr~~~~~~l~~~--~~~--~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~-l 104 (226)
T PRK05785 35 VRWRAELVKTILKY--CGR--PKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVADD--KVVGSFEA-L 104 (226)
T ss_pred HHHHHHHHHHHHHh--cCC--CCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhccc--eEEechhh-C
Confidence 56877665432211 122 468999999999999999887 33 6899999 999999987642 11212233 4
Q ss_pred CCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCc-EEEEEcC
Q 020011 239 TYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNG-YVIVRES 284 (332)
Q Consensus 239 ~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG-~lii~d~ 284 (332)
||+ ++||+|.|+.+|+|+. +++.+|.||.|||||.+ .+.+..+
T Consensus 105 p~~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~~ile~~~p 149 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQVGFIAMGKP 149 (226)
T ss_pred CCCCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCceEEEEeCCC
Confidence 788 9999999999999875 57899999999999964 4444443
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=3.4e-12 Score=115.29 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=70.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCC--CCCCccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFS--TYPRTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~--~yp~sFDlVh~s~vf~ 254 (332)
..+|||+|||+|.++.+|++++. +|+++|. +++++.+.++ ++.. ++-.+..+. +++.+||+|.|+.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVLM 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecchh
Confidence 46899999999999999999875 6778888 7777766543 3321 111112222 3457899999999998
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEE
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii 281 (332)
|++ +.+...++.++.|+|||||++++
T Consensus 107 ~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 876 34678899999999999999655
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.34 E-value=3.8e-12 Score=121.38 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHH----HhcCcccccccccccCCCCCCccceeEehhhh
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVV----YDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLF 253 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a----~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf 253 (332)
....+|||+|||.|+++.+++++ |+ +|+++.. +++.+.| .++|+...+.-.+..+..++.+||.|.+-.+|
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~ 137 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMF 137 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEG
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEech
Confidence 34679999999999999999998 76 4555555 6666655 45577544333334445566799999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+|+.. .+...++..+.|+|||||.+++..
T Consensus 138 Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 138 EHVGR-KNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GGTCG-GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred hhcCh-hHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99973 578899999999999999999865
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.33 E-value=2.5e-11 Score=109.82 Aligned_cols=152 Identities=16% Similarity=0.214 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--cccc
Q 020011 160 DSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYHD 232 (332)
Q Consensus 160 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~d 232 (332)
...|.+.+-.-..+.+.++. ..+|||+|||+|.++..++...- ...|+++|. +++++.|.++ |+.. .++.
T Consensus 26 ~~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 26 EELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 34777776443333333443 56899999999998888775321 125788888 7777666543 4421 1221
Q ss_pred ccccCCCCCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeec--ccccc
Q 020011 233 WCEAFSTYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKE--DTEYG 310 (332)
Q Consensus 233 ~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~--~~e~~ 310 (332)
-.+.+.. .++||+|.|+.+ .+++.++.++.|+|||||.+++.........+.++++.+-|.+... .+-.|
T Consensus 103 d~~~~~~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred cHhhCCC-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 1122222 479999999742 2467899999999999999999998888889999999888886433 22233
Q ss_pred c-ccceEEEEEec
Q 020011 311 V-EKEKLLLCQKK 322 (332)
Q Consensus 311 ~-~~e~~li~~K~ 322 (332)
- +.-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 3 33446666663
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.33 E-value=2.6e-12 Score=120.18 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=78.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc----ccccc-cccccCCCCC-CccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL----IGTYH-DWCEAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl----ig~~~-d~~e~~~~yp-~sFDlVh~s~vf~ 254 (332)
..+|||+|||-|.++..|+..|. +|+++|. +..+++|..+.+ ...|- .-.|.+ ... .+||+|.|..|++
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl-~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDL-ASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHH-HhcCCCccEEEEhhHHH
Confidence 45799999999999999999996 7899999 999999986643 22221 001111 234 7999999999999
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
|+++ +..++++..+.|||||.++++..+
T Consensus 136 Hv~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 136 HVPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 9975 678999999999999999999976
No 21
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.32 E-value=8.1e-12 Score=115.27 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCC-eEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCCC-CccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPL-WVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v-~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~yp-~sFDlVh~s~vf~ 254 (332)
..+|||+|||+|.++..|+++.. -..+++++|. ++++..|.++ +....++-.+..+..++ ..||+|.|+.+|+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 46899999999999998877411 0126788888 8899888765 21111111122333455 6799999999999
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+.+ .+...+|.++.|+|||||.|+++++
T Consensus 134 ~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 134 FLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9864 3567899999999999999999985
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=114.43 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc-ccccccccccCCCCC-CccceeEehhhh
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL-IGTYHDWCEAFSTYP-RTYDLLHLDGLF 253 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl-ig~~~d~~e~~~~yp-~sFDlVh~s~vf 253 (332)
+......+|||+|||+|.++..|++..- .-.|+++|. +.+++.+.++.- +.... +......+ ++||+|+|+.+|
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~--~d~~~~~~~~~fD~v~~~~~l 103 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVE--ADIASWQPPQALDLIFANASL 103 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEE--CchhccCCCCCccEEEEccCh
Confidence 3334467899999999999999987521 125788888 889998877631 11111 01111124 899999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcChh----HHHHHHHHHhcCcce
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRESSY----FIDAVATIAKGMKWS 301 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~----~~~~i~~i~~~l~W~ 301 (332)
+|++ +...++.++.|+|||||.+++..+.. ....+++++....|.
T Consensus 104 ~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 152 (258)
T PRK01683 104 QWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWE 152 (258)
T ss_pred hhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchH
Confidence 9986 36789999999999999999975321 112344455444554
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.29 E-value=1.5e-11 Score=119.61 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHH---Hhc-Ccccccccccc
Q 020011 161 SKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVV---YDR-GLIGTYHDWCE 235 (332)
Q Consensus 161 ~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a---~eR-Glig~~~d~~e 235 (332)
..|+..+. |..+++.+.....++|||+|||+|.++..++..+.. .|+++|. +.++..+ ... +.....+-...
T Consensus 102 ~e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 35654443 112233344444689999999999999998887652 3677777 5555422 111 11111110101
Q ss_pred cC--CCCCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 236 AF--STYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 236 ~~--~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.+ .+++.+||+|+|+.+|+|+. ++..+|.|+.|+|||||.|++.+
T Consensus 179 ~ie~lp~~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 179 GIEQLHELYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CHHHCCCCCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 23337899999999999975 56899999999999999999864
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.28 E-value=1.7e-11 Score=111.83 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Ccc--cccccccccCCCCC-CccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLI--GTYHDWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Gli--g~~~d~~e~~~~yp-~sFDlVh~s~v 252 (332)
..+|||+|||+|.++..|++. +. ...++++|. +++++.+.++ ++. ..++.-.+. .+++ ++||+|+++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME-LPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhc-CCCCCCCccEEEEecc
Confidence 468999999999999999875 21 125778888 7888777654 221 111111111 3467 89999999999
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+|++ +...++.|+.|+|||||.+++.+.
T Consensus 124 l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99876 467899999999999999998764
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.28 E-value=9.8e-12 Score=115.91 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=75.0
Q ss_pred CCeEEEecCcchHHHHHHhcC---CCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCCC-CccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD---PLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~---~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~yp-~sFDlVh~s~v 252 (332)
..+|||+|||+|.++..|++. +. ..++++|. +++++.+.++ |+...+.-.+..+..+| ..||+|.++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 467999999999999888762 22 26788998 9999988776 22211111123334455 67999999999
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+|+++ .+...++.+|.|+|||||.|++.+.
T Consensus 135 l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999864 4567899999999999999999873
No 26
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.28 E-value=9.3e-12 Score=113.22 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=81.3
Q ss_pred CCeEEEecCcchHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC-CccceeEehhhhccccc
Q 020011 182 IRNVMDMNTLYGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESH 258 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~ 258 (332)
..+|||+|||.|.+.++|.+ +++ ...+++. ++.+..+.+||+....+|+-+.+..|| ++||.|+.++.|+++.
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~- 89 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR- 89 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh-
Confidence 47899999999999999988 455 5678888 888999999999887788777788899 9999999999999986
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.++.+|.||-|| |...|++=|+
T Consensus 90 --~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 90 --RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred --HHHHHHHHHHHh---cCeEEEEecC
Confidence 367899999777 6677877766
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.27 E-value=1.3e-11 Score=111.98 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=71.8
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccC--CCCCCccceeEehhhhcc
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAF--STYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~--~~yp~sFDlVh~s~vf~h 255 (332)
++|||+|||.|+++..+++..- ..+++++|. ++++..+.++ |+...+.-....+ .+++++||+|++..+|+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHh
Confidence 3799999999999999987531 125677777 7777777664 3422111111111 245689999999999999
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+.+ ...++.++.|+|||||++++.+.
T Consensus 80 ~~~---~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IKD---KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCC---HHHHHHHHHHHcCCCCEEEEEEc
Confidence 863 67999999999999999999874
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=1.5e-11 Score=119.67 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=70.2
Q ss_pred CCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHH--HHhc--CcccccccccccC--CCCCCccceeE
Q 020011 176 ALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAV--VYDR--GLIGTYHDWCEAF--STYPRTYDLLH 248 (332)
Q Consensus 176 ~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~--a~eR--Glig~~~d~~e~~--~~yp~sFDlVh 248 (332)
.+.....++|||+|||+|.++..|+..+.- .|+++|. +.++.. +..+ +....++-.+..+ .+++++||+|+
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~ 194 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVF 194 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEE
Confidence 343334579999999999999999987642 3677777 555432 1111 1100011111111 23468999999
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|..+|+|.. +...+|.++.|+|||||.|++.+
T Consensus 195 s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999975 57789999999999999999864
No 29
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=2e-11 Score=115.57 Aligned_cols=132 Identities=12% Similarity=0.171 Sum_probs=90.8
Q ss_pred ccccccccchhhHHHHHHHHHh-hcCCCCCCCCCeEEEecCcchH----HHHHHhcCC----CeEEEEeecCc-hhhHHH
Q 020011 151 GSASAFKHDDSKWNVRVKHYKK-LLPALGTDKIRNVMDMNTLYGG----FAAAVIDDP----LWVMNVVSSYA-ANTLAV 220 (332)
Q Consensus 151 ~~~~~F~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~Gg----faa~L~~~~----v~vmnv~p~d~-~~~l~~ 220 (332)
.....|-.|..+|......... ++.....+...+|+|+|||+|. +|..|.+.. .+...|.++|. +.+|+.
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 3456788888888876654332 2222222335689999999995 565565532 12347899999 999998
Q ss_pred HHhcC--------cc-------------------------c-ccccccccCCCCC-CccceeEehhhhccccccCCHHHH
Q 020011 221 VYDRG--------LI-------------------------G-TYHDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFV 265 (332)
Q Consensus 221 a~eRG--------li-------------------------g-~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~i 265 (332)
|.+.- +. - ..||..+ .++| ++||+|+|.+||+|+++ .....+
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~-~~~~~~ 224 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDE-PTQRKL 224 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCH-HHHHHH
Confidence 87531 11 0 1123222 2455 89999999999999963 456789
Q ss_pred HHHHHhhhcCCcEEEEEcCh
Q 020011 266 LLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 266 L~EmdRVLRPGG~lii~d~~ 285 (332)
+.++.|+|+|||+|++....
T Consensus 225 l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 225 LNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHHhCCCeEEEEECcc
Confidence 99999999999999997653
No 30
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.25 E-value=2.5e-11 Score=120.73 Aligned_cols=97 Identities=18% Similarity=0.272 Sum_probs=75.0
Q ss_pred CCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcC--cccccccccccCCCCCCccceeEehhhhccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRG--LIGTYHDWCEAFSTYPRTYDLLHLDGLFTAE 256 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRG--lig~~~d~~e~~~~yp~sFDlVh~s~vf~h~ 256 (332)
...+|||+|||+|+++.++++. +. .|+++|. +++++.+.++. +. +.-.+..+...+++||+|++..+|+|+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~--v~~~~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLP--VEIRLQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCe--EEEEECchhhcCCCCCEEEEeCchhhC
Confidence 3578999999999999999875 44 6788888 88999988864 21 110111222235899999999999998
Q ss_pred cccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. .+...++.++.|+|||||++++..
T Consensus 242 g~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 GP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred Ch-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 63 456789999999999999999965
No 31
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.25 E-value=1.4e-12 Score=103.92 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=54.4
Q ss_pred EEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc--c--c-ccccc--cccCCCCC-CccceeEehhhhccc
Q 020011 186 MDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL--I--G-TYHDW--CEAFSTYP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 186 LD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl--i--g-~~~d~--~e~~~~yp-~sFDlVh~s~vf~h~ 256 (332)
||+|||+|.++.+|.++. -...++++|. +.+++.+.+|-- . . ..... .+.+...+ ++||+|++++||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 899999999999998873 2347788888 888865655521 1 0 00000 01122233 699999999999999
Q ss_pred cccCCHHHHHHHHHhhhcCCcEE
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYV 279 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~l 279 (332)
+ ++..++..+.++|||||.|
T Consensus 80 ~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----HHHHHHHHTTT-TSS-EE
T ss_pred h---hHHHHHHHHHHHcCCCCCC
Confidence 3 6889999999999999986
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.24 E-value=5.2e-11 Score=107.31 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc---ccccccccccCCCCC-CccceeEehhhhccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL---IGTYHDWCEAFSTYP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl---ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~ 256 (332)
..+|||+|||+|.++.+|++.+.- ..++++|. +.++..+.++.. .-...|. +. .+++ ++||+|+|+.+|+|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~-~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDA-EK-LPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecch-hh-CCCCCCceeEEEEhhhhhhc
Confidence 468999999999999999887532 24678888 788887877642 1111111 12 2456 899999999999997
Q ss_pred cccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
. +...++.++.|+|||||++++...
T Consensus 112 ~---~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 112 D---DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred c---CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5 467899999999999999999774
No 33
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.23 E-value=1.8e-11 Score=116.53 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=81.7
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCC--CCCCccceeEehhhhcc
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFS--TYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~--~yp~sFDlVh~s~vf~h 255 (332)
.+|||+|||+|.++.+|++++. .|+++|. +.+++.+.++ ++. +.-.+..+. .++++||+|.+..+|+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~--v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLN--IRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCc--eEEEEechhcccccCCccEEEEcchhhh
Confidence 4899999999999999999875 5778888 7777765443 441 111111122 23589999999999999
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEcC---h--------h---HHHHHHHHHhcCcceeeec
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRES---S--------Y---FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d~---~--------~---~~~~i~~i~~~l~W~~~~~ 305 (332)
+. +.++..++.+|.|+|||||++++... . . --++++++.+. |++..+
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 86 35678999999999999999665321 0 1 13556666665 887665
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.23 E-value=2.1e-11 Score=123.13 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=74.9
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC--cc---cc-cccccccCCCCC-CccceeEehhh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG--LI---GT-YHDWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG--li---g~-~~d~~e~~~~yp-~sFDlVh~s~v 252 (332)
...+|||+|||+|.++..|++..- ..|+++|. +.++..|.++. +. .. ..|+. ..++| ++||+|+|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT--KKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc--cCCCCCCCEEEEEECCc
Confidence 357899999999999999987531 26788888 88998887652 21 11 12211 13577 89999999999
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+|+++ ...+|.|+.|+|||||.+++.+.
T Consensus 342 l~h~~d---~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 342 ILHIQD---KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccccCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 999864 67999999999999999999863
No 35
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.22 E-value=1.1e-11 Score=113.27 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=90.3
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccccccccccc-CC-CCC-CccceeEehhh
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEA-FS-TYP-RTYDLLHLDGL 252 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~-~~-~yp-~sFDlVh~s~v 252 (332)
+....++++|++|||.|.|++.|+.+- -.++.+|. +.+++.|.+|---...-.|... ++ ..| ++|||||++.|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 456678999999999999999999973 26777888 8899999988321111122222 22 257 99999999999
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcChh----------HHHHHHHHHhcCcceeeecccccccccceEEEEE
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY----------FIDAVATIAKGMKWSCHKEDTEYGVEKEKLLLCQ 320 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~----------~~~~i~~i~~~l~W~~~~~~~e~~~~~e~~li~~ 320 (332)
|+|+.+..++..++..+...|+|||.+|+-...+ =-+.|.+++...-=++.-..-..++..|.-|+++
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence 9999765677889999999999999999976442 1233444433333333332222333456677664
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.21 E-value=6.4e-11 Score=106.36 Aligned_cols=101 Identities=25% Similarity=0.235 Sum_probs=73.8
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc--Cccccccccc-cc-CCCCC-CccceeEehhhhc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR--GLIGTYHDWC-EA-FSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR--Glig~~~d~~-e~-~~~yp-~sFDlVh~s~vf~ 254 (332)
...+|||+|||+|.++..+++...-.-+++++|. +++++.+.++ +......-.. .. -.+++ .+||+|++..+|+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhh
Confidence 3678999999999999998875200125778888 8888888776 1111111011 11 12466 8999999999999
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+. +...++.++.++|||||++++.++
T Consensus 99 ~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 99 HLE---DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ccC---CHHHHHHHHHHHhcCCcEEEEEec
Confidence 986 467899999999999999998763
No 37
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.20 E-value=8.7e-11 Score=110.88 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCeEEEecCcchHHHHHHhcCCC--eEEEEeecCc-hhhHHHHHhcCcccc--cccccccCCCCC-CccceeEehhhhc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPL--WVMNVVSSYA-ANTLAVVYDRGLIGT--YHDWCEAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v--~vmnv~p~d~-~~~l~~a~eRGlig~--~~d~~e~~~~yp-~sFDlVh~s~vf~ 254 (332)
...+|||+|||+|.++..|++... -...++++|. ++++..|.++.-... ..|. .-.||+ ++||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~--~~lp~~~~sfD~I~~~~~-- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS--HRLPFADQSLDAIIRIYA-- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec--ccCCCcCCceeEEEEecC--
Confidence 346799999999999999876421 1125789999 999999987742111 1111 124687 89999997532
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
. ..+.|+.|+|||||+|++..+..
T Consensus 161 ----~----~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 ----P----CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ----C----CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24689999999999999987654
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.19 E-value=7.6e-11 Score=107.67 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCc-ccccccccccCCCCC-CccceeEehhhhcccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGL-IGTYHDWCEAFSTYP-RTYDLLHLDGLFTAES 257 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGl-ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~ 257 (332)
..+|||+|||+|.++..|++. +. .+++++|. +++++.|.++.- +...+ ...+.+++ ++||+|.|+.+|+|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~--~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQ--GSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEE--eeccCCCCCCCEEEEEECChhhhCC
Confidence 567999999999999999876 22 26889998 999999987532 11111 12233677 9999999999999996
Q ss_pred ccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 258 HRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 258 ~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+.++..++.||.|++ +++++|.+
T Consensus 120 -p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 456789999999998 57888866
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.18 E-value=9.2e-11 Score=100.81 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=73.6
Q ss_pred CCeEEEecCcchHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhc----Ccc--ccc-ccccccCCC-CCCccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDR----GLI--GTY-HDWCEAFST-YPRTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eR----Gli--g~~-~d~~e~~~~-yp~sFDlVh~s~ 251 (332)
..+|||+|||+|.++..|++ .+. ...++++|. +++++.|..+ ++. -.+ .|. +.+.. |++.||+|+++.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~-~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI-EDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT-TCGCGCSSTTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeeh-hccccccCCCeeEEEEcC
Confidence 56899999999999999994 321 125788999 9999988874 442 111 111 11111 447999999999
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+|+|+. +...++.++.|.|+|||.+++.+..
T Consensus 82 ~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 998875 4568999999999999999999977
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=5.5e-11 Score=120.13 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=75.2
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC-c---cccc-ccccccCCCCC-CccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG-L---IGTY-HDWCEAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG-l---ig~~-~d~~e~~~~yp-~sFDlVh~s~vf~ 254 (332)
..+|||+|||+|.++..|++... .|+++|. +.+++.+.++. . +..+ .|......++| ++||+|.|+.+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 46899999999999999998754 5678888 88887765432 1 1111 12111124577 8999999999999
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+++ .++..+|.++.|+|||||++++.|.
T Consensus 115 ~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YLSD-KEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9975 3467899999999999999999863
No 41
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=110.52 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=78.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc-----ccc----cccccccCCCCCCccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL-----IGT----YHDWCEAFSTYPRTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl-----ig~----~~d~~e~~~~yp~sFDlVh~s~ 251 (332)
.++|||+|||.|-+...|+..|. +|+++|. ++++.+|.+..- .+. .--.|....-....||.|.|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 47899999999999999999997 7899999 999999988731 120 1011222233346699999999
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
|++|+.+ +..++.-+.+.|||||.++|++-+
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeehh
Confidence 9999964 678999999999999999999855
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=1.7e-10 Score=103.46 Aligned_cols=127 Identities=13% Similarity=0.189 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHh----cCcccccccccc
Q 020011 161 SKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYD----RGLIGTYHDWCE 235 (332)
Q Consensus 161 ~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~e----RGlig~~~d~~e 235 (332)
..|.+.+-.-..+++.+. ..+|||+|||+|.++..|+.... ...|+++|. +++++.+.+ .|+.. +.-.+.
T Consensus 25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEec
Confidence 355554433222233333 46899999999998887765421 124677787 666655543 24421 111112
Q ss_pred cCCC--CCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCc
Q 020011 236 AFST--YPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMK 299 (332)
Q Consensus 236 ~~~~--yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~ 299 (332)
.... ..++||+|.|.. ++ ++..++.++.|+|||||.+++........++..+.+++|
T Consensus 100 d~~~~~~~~~fD~I~s~~-~~------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~ 158 (181)
T TIGR00138 100 RAEDFQHEEQFDVITSRA-LA------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ 158 (181)
T ss_pred chhhccccCCccEEEehh-hh------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence 2222 238999999976 43 355789999999999999999988877777777766644
No 43
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=5e-10 Score=107.06 Aligned_cols=139 Identities=13% Similarity=0.063 Sum_probs=91.2
Q ss_pred cccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC----ccc
Q 020011 154 SAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG----LIG 228 (332)
Q Consensus 154 ~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG----lig 228 (332)
..|..+.+-....+......+ ... ..+|||+|||+|.++.+++..+. -.|.++|. +.+++.+.++. +..
T Consensus 136 ~aFgtG~h~tt~l~l~~l~~~--~~~--g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~ 209 (288)
T TIGR00406 136 LAFGTGTHPTTSLCLEWLEDL--DLK--DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSD 209 (288)
T ss_pred CcccCCCCHHHHHHHHHHHhh--cCC--CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 346666665555554443322 112 36899999999999988887764 25778888 88888877652 211
Q ss_pred ccccccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcCcceeeec
Q 020011 229 TYHDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 229 ~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l~W~~~~~ 305 (332)
...........++ +.||+|+|+.+.++ +..++.++.|+|||||+|+++.... ..+.+.+.+++. |+....
T Consensus 210 ~~~~~~~~~~~~~~~~fDlVvan~~~~~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 210 RLQVKLIYLEQPIEGKADVIVANILAEV------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ceEEEecccccccCCCceEEEEecCHHH------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 1221222233444 89999999865433 4579999999999999999988543 355666666665 765443
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.13 E-value=2.7e-11 Score=97.27 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=64.7
Q ss_pred EEEecCcchHHHHHHhcCC--CeEEEEeecCc-hhhHHHHHhcCc-cc-ccccccccCC--CCC-CccceeEeh-hhhcc
Q 020011 185 VMDMNTLYGGFAAAVIDDP--LWVMNVVSSYA-ANTLAVVYDRGL-IG-TYHDWCEAFS--TYP-RTYDLLHLD-GLFTA 255 (332)
Q Consensus 185 VLD~GCG~Ggfaa~L~~~~--v~vmnv~p~d~-~~~l~~a~eRGl-ig-~~~d~~e~~~--~yp-~sFDlVh~s-~vf~h 255 (332)
|||+|||+|..+.+|.+.. .--..+.++|. ++++..+.++.- .+ ..+-.+..+. ++. ++||+|.|+ .+|+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999988752 00136789999 999999988862 00 1111112222 344 899999995 55999
Q ss_pred ccccCCHHHHHHHHHhhhcCCc
Q 020011 256 ESHRCDMKFVLLEMDRILRPNG 277 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG 277 (332)
+.+ .+++.++.++.++|||||
T Consensus 81 ~~~-~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSP-EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSH-HHHHHHHHHHHHTEEEEE
T ss_pred CCH-HHHHHHHHHHHHHhCCCC
Confidence 763 578899999999999998
No 45
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.13 E-value=1.3e-10 Score=109.13 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=69.9
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccc--cc-ccccccCCCCC-CccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIG--TY-HDWCEAFSTYP-RTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~-~d~~e~~~~yp-~sFDlVh~s~ 251 (332)
..+|||+|||+|..+..++.. +.. ..|+++|. +.+++.+.++ |+.. .. .|. + ..+++ ++||+|+++.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~-~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-E-ALPVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-h-hCCCCCCceeEEEEcC
Confidence 569999999999866555442 221 14678888 8888888765 2211 11 111 1 13577 8999999999
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+|+|.+ +...++.|+.|+|||||.|++.+
T Consensus 155 v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999875 45789999999999999999976
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=4.6e-10 Score=107.69 Aligned_cols=128 Identities=18% Similarity=0.302 Sum_probs=86.9
Q ss_pred cccccccch-hhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHH----hc
Q 020011 152 SASAFKHDD-SKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVY----DR 224 (332)
Q Consensus 152 ~~~~F~~d~-~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~----eR 224 (332)
|..-|+.+. ++=..+.+.+..++..+.-....+|||+|||-|+++.+++++ ++ +|++++. +++...+. ++
T Consensus 42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~ 118 (283)
T COG2230 42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAAR 118 (283)
T ss_pred eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHc
Confidence 344455544 233333433333333233334689999999999999999987 67 5666766 66665554 45
Q ss_pred CcccccccccccCCCCCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 225 GLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 225 Glig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|+...++-.-.....++..||-|.+-.+|+|+.. .+...++.-++++|+|||.+++-.
T Consensus 119 gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 119 GLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CCCcccEEEeccccccccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEE
Confidence 7763222111122345566999999999999984 678999999999999999999855
No 47
>PRK06202 hypothetical protein; Provisional
Probab=99.10 E-value=4.1e-10 Score=103.51 Aligned_cols=100 Identities=13% Similarity=0.181 Sum_probs=72.2
Q ss_pred CCCCeEEEecCcchHHHHHHhc----CCCeEEEEeecCc-hhhHHHHHhcCc-cc--ccccccccCCCCC-CccceeEeh
Q 020011 180 DKIRNVMDMNTLYGGFAAAVID----DPLWVMNVVSSYA-ANTLAVVYDRGL-IG--TYHDWCEAFSTYP-RTYDLLHLD 250 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~----~~v~vmnv~p~d~-~~~l~~a~eRGl-ig--~~~d~~e~~~~yp-~sFDlVh~s 250 (332)
....+|||+|||+|.++..|++ .+. ..+|+++|. +++++.+.++.. .+ ....-++.+ +++ ++||+|.|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l-~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL-VAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccc-cccCCCccEEEEC
Confidence 3457899999999999888764 232 236899999 999999987732 11 111111222 345 899999999
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
.+|+|+++. ++..+|.||.|++| |.+++.+.
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 999999753 46689999999999 56666663
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.09 E-value=8e-10 Score=97.74 Aligned_cols=120 Identities=11% Similarity=0.064 Sum_probs=83.3
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCCCCccceeEehhhhccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAE 256 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~yp~sFDlVh~s~vf~h~ 256 (332)
..+|||+|||+|.++..+++.+. .|+++|. +++++.+.++ ++...+. -++.+...+++||+|.++..+++.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVV-MTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEE-EcccccccCCcccEEEECCCCCCC
Confidence 35799999999999999998765 5778888 8888777654 2211111 011122223899999999877665
Q ss_pred ccc------------------CCHHHHHHHHHhhhcCCcEEEEEcChhH-HHHHHHHHhcCcceeeec
Q 020011 257 SHR------------------CDMKFVLLEMDRILRPNGYVIVRESSYF-IDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 257 ~~~------------------c~~~~iL~EmdRVLRPGG~lii~d~~~~-~~~i~~i~~~l~W~~~~~ 305 (332)
++. ..+..++.++.|+|||||.+++...... ...+.++++..-+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 421 1146789999999999999999876544 556666666666766554
No 49
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.08 E-value=3.5e-10 Score=101.35 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=66.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC-CccceeEehhhhcccccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESHR 259 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~ 259 (332)
..+|||+|||+|.++.+|++... .++.++|. ++++..+..+++.-...|..+.+.+++ ++||+|.|+++|+|+.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-- 89 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-- 89 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc--
Confidence 35899999999999999976532 14577788 888888887775332233222233577 8999999999999986
Q ss_pred CCHHHHHHHHHhhhcCC
Q 020011 260 CDMKFVLLEMDRILRPN 276 (332)
Q Consensus 260 c~~~~iL~EmdRVLRPG 276 (332)
+...+|.||.|+++++
T Consensus 90 -d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 90 -NPEEILDEMLRVGRHA 105 (194)
T ss_pred -CHHHHHHHHHHhCCeE
Confidence 4678999998887653
No 50
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.08 E-value=6e-10 Score=105.40 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCCCCCCeEEEecCcchHHHHHHhcCC-----CeEEEEeecCc-hhhHHHHHhcC----cccc-cccc----cccCCCC
Q 020011 176 ALGTDKIRNVMDMNTLYGGFAAAVIDDP-----LWVMNVVSSYA-ANTLAVVYDRG----LIGT-YHDW----CEAFSTY 240 (332)
Q Consensus 176 ~l~~~~~r~VLD~GCG~Ggfaa~L~~~~-----v~vmnv~p~d~-~~~l~~a~eRG----lig~-~~d~----~e~~~~y 240 (332)
.+.+...-+||||+||+|-.|-.+.+.- .-..+|+-.|. ++||.++..|. +-.. -..| +| -+||
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE-~LpF 173 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE-DLPF 173 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc-cCCC
Confidence 3556667899999999998877766541 11135677788 99999888775 3221 0112 22 3579
Q ss_pred C-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHH-HHHHHHHh
Q 020011 241 P-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFI-DAVATIAK 296 (332)
Q Consensus 241 p-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~-~~i~~i~~ 296 (332)
| ++||+...+.-+.... +++.+|.|+.|||||||.|.+-+-..+- +.++.+..
T Consensus 174 dd~s~D~yTiafGIRN~t---h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~ 228 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVT---HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD 228 (296)
T ss_pred CCCcceeEEEecceecCC---CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH
Confidence 9 9999999998887765 5789999999999999999998865432 34444443
No 51
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.07 E-value=3.5e-10 Score=103.10 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hh----hHHHHHhcCcccccccccccCC--CCCCccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-AN----TLAVVYDRGLIGTYHDWCEAFS--TYPRTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~----~l~~a~eRGlig~~~d~~e~~~--~yp~sFDlVh~s~vf~ 254 (332)
.-++||+|||.|.-+.+|+++|. +|+.+|. +. ..++|.++++.- +..+..+. .+++.||+|.+..||+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i--~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDI--RTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TE--EEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCcee--EEEEecchhccccCCcCEEEEEEEec
Confidence 35899999999999999999997 4555555 33 344555667642 21222222 2458999999999999
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEE
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVR 282 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~ 282 (332)
|++ +..+..++..|..-|+|||++++.
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 997 567899999999999999999884
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.06 E-value=7.3e-10 Score=100.85 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=75.2
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcc-c---ccccccccCCCCCCccceeEehhhhcc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLI-G---TYHDWCEAFSTYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGli-g---~~~d~~e~~~~yp~sFDlVh~s~vf~h 255 (332)
...+|||+|||+|.++.+|++.+. .|+++|. ++++..+.++... + ...-.+..+...+++||+|.+..+++|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 357899999999999999998765 5788898 8899888876321 1 111011222223489999999999999
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
++. .++..++.++.|++++|+++.+....
T Consensus 132 ~~~-~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 132 YPA-SDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred CCH-HHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 863 45778999999999988888776543
No 53
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.05 E-value=6.3e-10 Score=109.40 Aligned_cols=97 Identities=15% Similarity=0.043 Sum_probs=72.4
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCc---ccccccccccCCCCC-CccceeEehhhhcc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGL---IGTYHDWCEAFSTYP-RTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGl---ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h 255 (332)
..+|||+|||+|.++..|++. +. .+++.+|. +++++.+.++.- +...+.-.+ ..+|+ ++||+|.++++|+|
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAE-DLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHH-hCCCCCCceeEEEEcChhhh
Confidence 468999999999998888764 22 25778888 888888877631 111111111 13577 89999999999999
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+++ ...+|.|+.|+|||||.+++.++
T Consensus 191 ~~d---~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 191 WPD---PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEEe
Confidence 864 56899999999999999988653
No 54
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.04 E-value=1.3e-09 Score=97.00 Aligned_cols=113 Identities=11% Similarity=0.063 Sum_probs=77.9
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc-CCCCCCccceeEehhhhc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA-FSTYPRTYDLLHLDGLFT 254 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~-~~~yp~sFDlVh~s~vf~ 254 (332)
...+|||+|||+|.++.+++++.- ...|+.+|. +.+++.+.++ ++.. +.-.+.. ..+++.+||+|++.....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCcc
Confidence 356899999999999998877532 125677888 7777777543 3211 1111111 223458899999986543
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEc-ChhHHHHHHHHHhcCcce
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRE-SSYFIDAVATIAKGMKWS 301 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d-~~~~~~~i~~i~~~l~W~ 301 (332)
.+..++.++.|+|+|||++++.. ..+...++.++++...+.
T Consensus 109 ------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 109 ------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred ------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 35679999999999999999976 344456677777776664
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.04 E-value=7.4e-10 Score=100.57 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=80.3
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--ccc-cccccCC-CCC-CccceeEeh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYH-DWCEAFS-TYP-RTYDLLHLD 250 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~-d~~e~~~-~yp-~sFDlVh~s 250 (332)
...+|||+|||+|.++..|++..-- .+++++|. +++++.+.++ ++.. .++ |..+.+. .++ ++||+|.++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4578999999999999999875211 25788888 8888777654 3311 111 1112222 266 899999986
Q ss_pred hhhccc-----cccCCHHHHHHHHHhhhcCCcEEEEEc-ChhHHHHHHHHHhcCcceee
Q 020011 251 GLFTAE-----SHRCDMKFVLLEMDRILRPNGYVIVRE-SSYFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 251 ~vf~h~-----~~~c~~~~iL~EmdRVLRPGG~lii~d-~~~~~~~i~~i~~~l~W~~~ 303 (332)
...... ..+.....+|.++.|+|||||.|++.. .......+.+....--|.+.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 443211 111235689999999999999999975 44556666666665556665
No 56
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.01 E-value=2.1e-09 Score=96.11 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc----ccc-cccccccCCCCC-CccceeEehhhh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL----IGT-YHDWCEAFSTYP-RTYDLLHLDGLF 253 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl----ig~-~~d~~e~~~~yp-~sFDlVh~s~vf 253 (332)
...+|||+|||.|.++.++++...-..+++++|. +.++..+.++.- +-. ..|.. . .+++ ++||+|+++.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~-~-~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE-A-LPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh-c-CCCCCCcEEEEEEeeee
Confidence 4578999999999999998876431125677887 778877776642 111 11111 1 2355 899999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+|.. ++..++.++.++|||||++++.+.
T Consensus 117 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVT---DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8875 477899999999999999998663
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.00 E-value=2.7e-09 Score=96.75 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=70.5
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC----cccccccccccCCCCC-CccceeEehhhhc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG----LIGTYHDWCEAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG----lig~~~d~~e~~~~yp-~sFDlVh~s~vf~ 254 (332)
...+|||+|||+|.++..|++.+. .++++|. +++++.|.++- +...++-.... .+++ .+||+|+|..+|+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEEEEcchhh
Confidence 356899999999999999998875 4788888 88888887752 21111111112 2344 8999999999999
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|+++ .....++.++.|++++|+.+.+..
T Consensus 139 ~~~~-~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 139 HYPQ-EDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred cCCH-HHHHHHHHHHHhhcCCeEEEEECC
Confidence 9874 457789999999886666554433
No 58
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.00 E-value=1.1e-09 Score=104.98 Aligned_cols=102 Identities=12% Similarity=0.205 Sum_probs=72.1
Q ss_pred CCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhc----CcccccccccccCC--CCCCccceeEehhhh
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDR----GLIGTYHDWCEAFS--TYPRTYDLLHLDGLF 253 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eR----Glig~~~d~~e~~~--~yp~sFDlVh~s~vf 253 (332)
...++|||+|||+|.++..++++.-. .+++.+|.+.+++.+.++ |+..-++-.+..+. ++| .+|+|.+++++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~l 225 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRIL 225 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhh
Confidence 34679999999999999999886321 256667776677666543 54322222222232 344 47999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+++.+ .....+|.++.|.|||||.++|.|.
T Consensus 226 h~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 226 YSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98763 3456899999999999999999874
No 59
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.00 E-value=2e-10 Score=107.28 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=101.4
Q ss_pred cCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccc-ccccccccCCC-CC-CccceeEe
Q 020011 174 LPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIG-TYHDWCEAFST-YP-RTYDLLHL 249 (332)
Q Consensus 174 l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig-~~~d~~e~~~~-yp-~sFDlVh~ 249 (332)
|.....+..+++||+|||+|-++-+|.+.-- .++++|. .+|++.|.++|+-- .++.=...|+. -. ..||||.+
T Consensus 118 I~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 118 IGKADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred HHhccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh
Confidence 3345556699999999999999999988633 5789999 99999999999732 12211123554 33 89999999
Q ss_pred hhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh----------------hHHHHHHHHHhcCcceeeec------cc
Q 020011 250 DGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS----------------YFIDAVATIAKGMKWSCHKE------DT 307 (332)
Q Consensus 250 s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----------------~~~~~i~~i~~~l~W~~~~~------~~ 307 (332)
..||.|+. +++.++.-..+.|.|||.|+++... ---..|..+..+---++... ..
T Consensus 195 aDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 195 ADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 99999986 5789999999999999999998732 01234555555444443321 11
Q ss_pred ccccccceEEEEEec
Q 020011 308 EYGVEKEKLLLCQKK 322 (332)
Q Consensus 308 e~~~~~e~~li~~K~ 322 (332)
...|.++.+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 223456777787775
No 60
>PRK06922 hypothetical protein; Provisional
Probab=98.98 E-value=8.3e-10 Score=116.05 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=73.6
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc-cc----ccccccccCC-CCC-CccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL-IG----TYHDWCEAFS-TYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl-ig----~~~d~~e~~~-~yp-~sFDlVh~s~vf 253 (332)
..+|||+|||+|.++..|++..- ..+++++|. +.+++.+.++.. .+ .++.-+..+. .|+ ++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 46899999999999988876421 236788999 888988876521 11 1111111222 266 999999999988
Q ss_pred cccc----------ccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 254 TAES----------HRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 254 ~h~~----------~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+|+. +..++..+|.++.|+|||||.+++.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8752 123567899999999999999999984
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.98 E-value=2.7e-09 Score=99.79 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=78.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC---CccceeEehhhhcccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP---RTYDLLHLDGLFTAES 257 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp---~sFDlVh~s~vf~h~~ 257 (332)
..+|||+|||+|.++.++++.+.. .|.++|. +.+++.+.++.-..... .. ..++ .+||+|+|+...+
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~---~~-~~~~~~~~~fD~Vvani~~~--- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE---LN-VYLPQGDLKADVIVANILAN--- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC---ce-EEEccCCCCcCEEEEcCcHH---
Confidence 568999999999999888877652 3788888 88888877652111110 11 1122 2799999974322
Q ss_pred ccCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcCcceeeec
Q 020011 258 HRCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 258 ~~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l~W~~~~~ 305 (332)
.+..++.++.|+|||||++++++... ..+.+...++...+.+...
T Consensus 191 ---~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 ---PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 24578999999999999999997543 3566777777777776544
No 62
>PRK14968 putative methyltransferase; Provisional
Probab=98.97 E-value=5.3e-09 Score=91.49 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=80.0
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cc-----ccccccccccCCCCC-CccceeEe
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GL-----IGTYHDWCEAFSTYP-RTYDLLHL 249 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gl-----ig~~~d~~e~~~~yp-~sFDlVh~ 249 (332)
...+|||+|||.|.++..|++++. ++.++|. ++++..+.++ ++ .-..+| .+.+++ .+||+|.+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD---LFEPFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecc---ccccccccCceEEEE
Confidence 356899999999999999998854 6778888 7788777443 22 112222 234456 68999998
Q ss_pred hhhhccccc------------------cCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcCcceeee
Q 020011 250 DGLFTAESH------------------RCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGMKWSCHK 304 (332)
Q Consensus 250 s~vf~h~~~------------------~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l~W~~~~ 304 (332)
+..+.+..+ ...+..++.++.|+|||||.+++..+.. ..+.+.......-++...
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 754432110 1124568999999999999988765432 245677777777776544
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.96 E-value=6e-09 Score=95.29 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=73.3
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccccccccc-cccCCCCC-CccceeEehhhh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDW-CEAFSTYP-RTYDLLHLDGLF 253 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~-~e~~~~yp-~sFDlVh~s~vf 253 (332)
...+|||+|||.|.++..|.+.+. +++.+|. ++.+..+.++ ++...++.- .+.++..+ .+||+|+++.+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 356799999999999999988765 5677887 7777777654 332222210 01122234 899999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+|.. +...+|.++.|+|+|||.+++....
T Consensus 125 ~~~~---~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 125 EHVP---DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred hccC---CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9986 4678999999999999999998653
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.96 E-value=2.8e-09 Score=96.41 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=70.7
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cc--ccccccccccCCCC-CCccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GL--IGTYHDWCEAFSTY-PRTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gl--ig~~~d~~e~~~~y-p~sFDlVh~s~vf 253 (332)
..+|||+|||+|.++..+++.+. .++.+|. +.++..+.++ ++ +.....-.+.+... +++||+|+++++|
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 56899999999999999988764 4667777 6777766654 22 11111111112222 3789999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+|.. +...+|.++.++|+|||.+++...
T Consensus 123 ~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 9985 467899999999999999999874
No 65
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.95 E-value=7.9e-10 Score=101.26 Aligned_cols=100 Identities=13% Similarity=0.085 Sum_probs=60.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCccccccccccc------CCCCC-CccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEA------FSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~------~~~yp-~sFDlVh~s~vf~ 254 (332)
..+|||+|||+|.++..|+++..-.-.|+++|...+... .++.-...|..+. ..+++ .+||+|.|+...+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~ 128 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN 128 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence 458999999999999988876211113556665222111 1221111221111 01355 8999999986554
Q ss_pred cccccC--------CHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 255 AESHRC--------DMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 255 h~~~~c--------~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
...+.. ..+.+|.++.|+|||||.|++...
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 432110 124699999999999999999653
No 66
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.94 E-value=2.6e-09 Score=98.39 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=70.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHH-hcCcccc--------------cccccccCCCCC----
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY-DRGLIGT--------------YHDWCEAFSTYP---- 241 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~-eRGlig~--------------~~d~~e~~~~yp---- 241 (332)
..+|||+|||.|..+.+|+++|. +|+++|. +.+++.++ +.|+... +.-.+..+..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 46899999999999999999987 6788888 77777643 3444211 111122222222
Q ss_pred CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEE
Q 020011 242 RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii 281 (332)
.+||+|....+|+|++ +.....++..|.|.|||||++++
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 5799999999999997 45667899999999999997544
No 67
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.94 E-value=2.2e-09 Score=95.70 Aligned_cols=134 Identities=12% Similarity=0.084 Sum_probs=73.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccC------CCCC-CccceeEehhh-
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAF------STYP-RTYDLLHLDGL- 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~------~~yp-~sFDlVh~s~v- 252 (332)
..+|||+|||+|+++..++++..-...|.++|. +.+ ...++.-...|..+.. ..++ ++||+|.++..
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 568999999999999888765211113455555 322 1112211112221110 1256 78999998643
Q ss_pred -------hccccccCCHHHHHHHHHhhhcCCcEEEEEc-ChhHH-HHHHHHHhcCcceeeecc-ccccc-ccceEEEEE
Q 020011 253 -------FTAESHRCDMKFVLLEMDRILRPNGYVIVRE-SSYFI-DAVATIAKGMKWSCHKED-TEYGV-EKEKLLLCQ 320 (332)
Q Consensus 253 -------f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d-~~~~~-~~i~~i~~~l~W~~~~~~-~e~~~-~~e~~li~~ 320 (332)
+.|....+.+..+|.++.|+|||||.+++.. ....+ +-++.+.+.+ +.+.... .-... ..|..+||.
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLF-EKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhh-ceEEEeCCCCCCcccceEEEEEe
Confidence 2222111234679999999999999999943 22212 2222222232 4444432 11222 578888885
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.93 E-value=2.8e-09 Score=98.53 Aligned_cols=96 Identities=9% Similarity=-0.027 Sum_probs=72.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHH-HhcCcccc--------------cccccccCCCC---C-
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVV-YDRGLIGT--------------YHDWCEAFSTY---P- 241 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a-~eRGlig~--------------~~d~~e~~~~y---p- 241 (332)
..+|||+|||.|..+.+|+++|. +|+++|. +.+++.+ .++|+... +.-++..+..+ .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35899999999999999999987 6788998 7788764 45665321 11122222222 3
Q ss_pred CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEE
Q 020011 242 RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii 281 (332)
.+||+|.-+.+|+|++ ......++..|.++|||||++++
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 6899999999999997 35668899999999999986444
No 69
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.92 E-value=7.8e-09 Score=93.45 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC----ccc---cccccccc-CCCCC-CccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG----LIG---TYHDWCEA-FSTYP-RTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG----lig---~~~d~~e~-~~~yp-~sFDlVh~s~ 251 (332)
..+|||+|||.|.++..+++...-...++++|. +++++.+.++- +.. ..+ +.. ..+++ .+||+|+++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ--GDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe--cccccCCCCCCCccEEEEec
Confidence 468999999999999988776410126778888 77877777652 111 111 111 12355 8999999999
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+++|+. +...+|.++.++|+|||.+++.+
T Consensus 130 ~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 998875 57889999999999999999865
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.92 E-value=3.5e-09 Score=95.35 Aligned_cols=113 Identities=11% Similarity=0.131 Sum_probs=72.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--ccccccccCC--CCC-CccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYHDWCEAFS--TYP-RTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~d~~e~~~--~yp-~sFDlVh~s~ 251 (332)
-..|||+|||.|.++.+|+.+.-- .+++++|. ++++..|..+ |+.. .++.-...+. .++ ++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999886321 26778888 7777666543 3321 1111011111 256 7999999874
Q ss_pred hhc-----cccccCCHHHHHHHHHhhhcCCcEEEEEcCh-hHHHHHHHHH
Q 020011 252 LFT-----AESHRCDMKFVLLEMDRILRPNGYVIVRESS-YFIDAVATIA 295 (332)
Q Consensus 252 vf~-----h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~-~~~~~i~~i~ 295 (332)
-.. |.+.+.....++.++.|+|||||.|++.... ...+.+.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~ 145 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVL 145 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 322 2222333467999999999999999986544 4455554443
No 71
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.92 E-value=3.6e-09 Score=102.40 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=72.9
Q ss_pred hcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc--hhhHHHHHhcCcccc---cccc---cccCCCCCCcc
Q 020011 173 LLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA--ANTLAVVYDRGLIGT---YHDW---CEAFSTYPRTY 244 (332)
Q Consensus 173 ~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~--~~~l~~a~eRGlig~---~~d~---~e~~~~yp~sF 244 (332)
+.|++.+-..++|||+|||.|-++-.|+.+|.- .|+++|. .-..++.+-+.++|. ++-. -|.++. .++|
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~F 183 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAF 183 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCc
Confidence 345555556799999999999999999888762 3456665 223343333333321 1111 011222 4999
Q ss_pred ceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 245 DLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 245 DlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|+|+|..||.|.. +....|.++...|||||-+|+-.
T Consensus 184 DtVF~MGVLYHrr---~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 184 DTVFSMGVLYHRR---SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CEEEEeeehhccC---CHHHHHHHHHHhhCCCCEEEEEE
Confidence 9999999999964 67899999999999999999754
No 72
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.91 E-value=5.3e-09 Score=97.09 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred hcCCCCCCCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCc-----ccccccccccCCCCC-Ccc
Q 020011 173 LLPALGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGL-----IGTYHDWCEAFSTYP-RTY 244 (332)
Q Consensus 173 ~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGl-----ig~~~d~~e~~~~yp-~sF 244 (332)
++-.+.....++|.|+|||+|..+..|+++ +. -.|+++|. ++|++.|.+|+. .|.+++|| | ..+
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~~~ 93 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQPT 93 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCCcc
Confidence 444466667899999999999999999997 32 24789999 999999999875 35556554 4 889
Q ss_pred ceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChh----HHHHHHHHHhcCcceeeecccc------------
Q 020011 245 DLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY----FIDAVATIAKGMKWSCHKEDTE------------ 308 (332)
Q Consensus 245 DlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~----~~~~i~~i~~~l~W~~~~~~~e------------ 308 (332)
||++++.||+-+++ -..+|.-+---|.|||++.+.-+.. .-.-|.+.++..-|.....+.-
T Consensus 94 dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Y 170 (257)
T COG4106 94 DLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAY 170 (257)
T ss_pred chhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHH
Confidence 99999999998874 4678888889999999999987652 2345667777666665443200
Q ss_pred ---cccccceEEEEEeccCCC
Q 020011 309 ---YGVEKEKLLLCQKKLWYS 326 (332)
Q Consensus 309 ---~~~~~e~~li~~K~~w~~ 326 (332)
-.+...+|=||.+.|-.+
T Consensus 171 y~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 171 YELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHHhCcccceeeeeeeecccc
Confidence 011245677777777654
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.90 E-value=6.7e-09 Score=84.44 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=64.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccccccccccc---cCCCC-CCccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCE---AFSTY-PRTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e---~~~~y-p~sFDlVh~s~v 252 (332)
..+|||+|||+|.++.+++++.-- ..+.++|. +.+++.+.++ ++.. +.-.+. ...++ +.+||+|.+...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCCCCEEEECCc
Confidence 458999999999999999886211 35677887 7777665432 3221 110011 11223 378999999765
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+++ ...++.++.|+|||||+|++.-
T Consensus 98 ~~~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GGL------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred chh------HHHHHHHHHHHcCCCCEEEEEe
Confidence 432 4589999999999999999863
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.88 E-value=1.2e-08 Score=93.61 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=79.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccc-ccCCCCC-CccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWC-EAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~-e~~~~yp-~sFDlVh~s~vf~ 254 (332)
..+|||+|||.|.++..+++.... .+++++|. +.+++.+.++ |+.. ++-.+ ..+.+++ ++||+|+|+--+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccCcCCceeEEEECCCCC
Confidence 357999999999999999876211 25678887 7777766543 3321 11111 2234566 8999999853221
Q ss_pred ------cccccC-----------------CHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCccee
Q 020011 255 ------AESHRC-----------------DMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSC 302 (332)
Q Consensus 255 ------h~~~~c-----------------~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~ 302 (332)
++.... ....++.++.|+|+|||.+++.........++++.++..+..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 111100 023588999999999999999887666677788877766653
No 75
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=3.2e-08 Score=92.34 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=86.3
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc---Ccccccccc-cccCCCCC-CccceeEehhhh--
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR---GLIGTYHDW-CEAFSTYP-RTYDLLHLDGLF-- 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR---Glig~~~d~-~e~~~~yp-~sFDlVh~s~vf-- 253 (332)
..+|||+|||+|.++..|+.... ...++++|. +.+++.+.++ +....+.-. +..+.+++ ++||+|.|+--+
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcCC
Confidence 45799999999999999987631 125778888 7788877765 221111111 12234455 899999985211
Q ss_pred ----c--------ccccc---------CCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcce-eeeccccccc
Q 020011 254 ----T--------AESHR---------CDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWS-CHKEDTEYGV 311 (332)
Q Consensus 254 ----~--------h~~~~---------c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~-~~~~~~e~~~ 311 (332)
+ |.+.. ..+..++.++.++|+|||++++......-+.++.+.....+. +... .+-.
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~--~d~~ 265 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR--KDLA 265 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe--cCCC
Confidence 1 11100 112468899999999999999976555556677777655554 2222 2233
Q ss_pred ccceEEEEEe
Q 020011 312 EKEKLLLCQK 321 (332)
Q Consensus 312 ~~e~~li~~K 321 (332)
+++++++++|
T Consensus 266 ~~~r~~~~~~ 275 (275)
T PRK09328 266 GRDRVVLGRR 275 (275)
T ss_pred CCceEEEEEC
Confidence 5778888764
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.86 E-value=1.4e-08 Score=99.79 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=70.8
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCCCCccceeEehhhhcccc
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAES 257 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~ 257 (332)
.+|||+|||+|.++..|+++.-. ..|+.+|. +.++..+.++ ++.+.+. ++..+...++.||+|+|+--||+..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 36999999999999999886321 24677887 7777766542 4433222 1222333348999999998887532
Q ss_pred c--cCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 258 H--RCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 258 ~--~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
. ......++.++.|.|||||.|+|..+.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 1 123467999999999999999887644
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.85 E-value=2.2e-08 Score=95.38 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=91.0
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc---c-cccccccCCCCC-CccceeEeh--
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG---T-YHDWCEAFSTYP-RTYDLLHLD-- 250 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig---~-~~d~~e~~~~yp-~sFDlVh~s-- 250 (332)
.+|||+|||+|.++..|+...- ...|+++|. +.++..|.+. |+.. . ..|+ +.+++ ..||+|.++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~---~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL---FEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hccCcCCCccEEEECCC
Confidence 5899999999999999987531 125678888 8888877764 3321 1 1222 33456 589999996
Q ss_pred -----------hhhccccccC---------CHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHh-cCcceeeeccccc
Q 020011 251 -----------GLFTAESHRC---------DMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAK-GMKWSCHKEDTEY 309 (332)
Q Consensus 251 -----------~vf~h~~~~c---------~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~-~l~W~~~~~~~e~ 309 (332)
.++.|.+..+ .+..++.++.+.|+|||++++-.....-..+.++.. ...|..... ..|
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D 270 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD 270 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC
Confidence 2344433111 245699999999999999999888777777888766 455643221 233
Q ss_pred ccccceEEEEEec
Q 020011 310 GVEKEKLLLCQKK 322 (332)
Q Consensus 310 ~~~~e~~li~~K~ 322 (332)
-.+.++++++++.
T Consensus 271 ~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 LNGKERVVLGFYH 283 (284)
T ss_pred CCCCceEEEEEec
Confidence 3467889988753
No 78
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.6e-08 Score=95.48 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=95.5
Q ss_pred cccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccccc--
Q 020011 154 SAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTY-- 230 (332)
Q Consensus 154 ~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~-- 230 (332)
..|-.+++--...+....+.+ +. +.++|||+|||+|-++.+.++.|.- .+.++|. +-+++.+++.-....+
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~--~~--~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKL--LK--KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred cccCCCCChhHHHHHHHHHHh--hc--CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCch
Confidence 457666666555555443322 22 4789999999999999999888872 4688888 8888888876321111
Q ss_pred --ccccccCCCCC--CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcCcceeeec
Q 020011 231 --HDWCEAFSTYP--RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 231 --~d~~e~~~~yp--~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l~W~~~~~ 305 (332)
+.-+-..+..+ ..||+|.|+= |-+ -+..+.-++.|.|||||++|++.-.. ..+.+.+-+.+-.|++...
T Consensus 213 ~~~~~~~~~~~~~~~~~~DvIVANI-LA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 213 LVQAKGFLLLEVPENGPFDVIVANI-LAE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred hhhcccccchhhcccCcccEEEehh-hHH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 11111123455 5999999983 322 24578889999999999999999654 3455666666667777655
Q ss_pred cc
Q 020011 306 DT 307 (332)
Q Consensus 306 ~~ 307 (332)
..
T Consensus 287 ~~ 288 (300)
T COG2264 287 LE 288 (300)
T ss_pred Ee
Confidence 43
No 79
>PRK04266 fibrillarin; Provisional
Probab=98.83 E-value=4.3e-08 Score=91.23 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=59.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHH----HhcCccc-ccccccccC--CCCCCccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVV----YDRGLIG-TYHDWCEAF--STYPRTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a----~eRGlig-~~~d~~e~~--~~yp~sFDlVh~s~vf 253 (332)
..+|||+|||+|.++.+|++.--- -.|.++|. +.+++.+ .++..+. ...|..+.. ..++.+||+|.+..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~-- 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV-- 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC--
Confidence 468999999999999999875211 14677777 6666533 3332121 222221111 12346799988642
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEE
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVR 282 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~ 282 (332)
.+......+|.|+.|+|||||.|+|.
T Consensus 150 ---~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 150 ---AQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ---CChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 11112235689999999999999993
No 80
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.81 E-value=1.6e-08 Score=100.89 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=74.6
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--ccc-cccccCCCCC-CccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYH-DWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~-d~~e~~~~yp-~sFDlVh~s~v 252 (332)
..+|||+|||+|.++.+|+++.-- ..|+.+|. +.+++.+.+. +..+ ..+ .+...+..++ .+||+|.|+--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcC
Confidence 358999999999999999886421 25677888 7788777653 2111 011 1122334455 69999999866
Q ss_pred hccc--cccCCHHHHHHHHHhhhcCCcEEEEEcC--hhHHHHHHHHH
Q 020011 253 FTAE--SHRCDMKFVLLEMDRILRPNGYVIVRES--SYFIDAVATIA 295 (332)
Q Consensus 253 f~h~--~~~c~~~~iL~EmdRVLRPGG~lii~d~--~~~~~~i~~i~ 295 (332)
|+.. ........++.++.|+|||||.|++... .++..+++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f 354 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF 354 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence 6532 1111235789999999999999999753 34455555543
No 81
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.79 E-value=4.9e-08 Score=87.97 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=74.6
Q ss_pred CCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc---CCCC-CCccceeEeh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA---FSTY-PRTYDLLHLD 250 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~---~~~y-p~sFDlVh~s 250 (332)
...+|||+|||+|.++..++.. +. ...|..+|. +.+++.+.++ |+...+...+.. +.+. +..||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~-~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGE-TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 3568999999999998877553 21 125677888 7788776554 321111111111 1222 3789999985
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEc-ChhHHHHHHHHHhcCcceee
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE-SSYFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d-~~~~~~~i~~i~~~l~W~~~ 303 (332)
.. ...+..++.++.|+|||||.+++.. ..+.+.++...++.+.++..
T Consensus 119 ~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 119 GG------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLE 166 (198)
T ss_pred CC------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeE
Confidence 31 2356789999999999999999843 33445666666665555544
No 82
>PLN03075 nicotianamine synthase; Provisional
Probab=98.79 E-value=4.8e-08 Score=94.53 Aligned_cols=140 Identities=10% Similarity=0.070 Sum_probs=90.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCC-eEEEEeecCc-hhhHHHHHhc-----Cccc--ccccccccCCCC-C-CccceeEe
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPL-WVMNVVSSYA-ANTLAVVYDR-----GLIG--TYHDWCEAFSTY-P-RTYDLLHL 249 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v-~vmnv~p~d~-~~~l~~a~eR-----Glig--~~~d~~e~~~~y-p-~sFDlVh~ 249 (332)
..++|+|+|||.|++++.+..... -...+.++|. +++++.|+.. |+-. .++ ....+... + ..||+|+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~-~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFH-TADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEE-ECchhhcccccCCcCEEEE
Confidence 578999999999987665543211 1124678888 7777766543 2211 111 01112222 3 78999999
Q ss_pred hhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChh---HHHHHHHHHhcCcceeeecccccccccceEEEEEecc
Q 020011 250 DGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY---FIDAVATIAKGMKWSCHKEDTEYGVEKEKLLLCQKKL 323 (332)
Q Consensus 250 s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~---~~~~i~~i~~~l~W~~~~~~~e~~~~~e~~li~~K~~ 323 (332)
. ++.|+. ..+...+|..+.|.|||||+|+++.... ++...-....--.|++....|..++.-.-++|++|..
T Consensus 202 ~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred e-cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 9 888774 3567899999999999999999997432 1111000001117888777777666567899999975
No 83
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=1.7e-08 Score=93.21 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=80.5
Q ss_pred hHHHHHHHHHh-hcCC----CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC-----c-cc-
Q 020011 162 KWNVRVKHYKK-LLPA----LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG-----L-IG- 228 (332)
Q Consensus 162 ~W~~~v~~y~~-~l~~----l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG-----l-ig- 228 (332)
.+.+.+++|+. ++.. +....---||.+|||+|.--.++-..+. -.|+.+|. ++|-+++..+- + ..
T Consensus 52 ~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~--~svt~lDpn~~mee~~~ks~~E~k~~~~~~ 129 (252)
T KOG4300|consen 52 IYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPI--NSVTCLDPNEKMEEIADKSAAEKKPLQVER 129 (252)
T ss_pred HHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCC--ceEEEeCCcHHHHHHHHHHHhhccCcceEE
Confidence 44556677765 2222 2222223489999999987666654433 25677777 77766654432 1 11
Q ss_pred ccccccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 229 TYHDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 229 ~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.++.-.|.+...+ .|||.|.|..+|.... +....|.|+.|+|||||.+++.++.
T Consensus 130 fvva~ge~l~~l~d~s~DtVV~TlvLCSve---~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 130 FVVADGENLPQLADGSYDTVVCTLVLCSVE---DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEeechhcCcccccCCeeeEEEEEEEeccC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2333345555578 9999999999987653 5789999999999999999998865
No 84
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.78 E-value=3e-08 Score=75.24 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=64.5
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHh---cCc---ccccccccccCCCCC-CccceeEehhhhcc
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYD---RGL---IGTYHDWCEAFSTYP-RTYDLLHLDGLFTA 255 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~e---RGl---ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h 255 (332)
+|||+|||.|.++..+.+.+. ..+..+|. ++.+..+.+ .+. +-.++.-.......+ .+||+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999999987322 25667776 556555541 111 111111111122224 88999999999987
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEE
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVR 282 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~ 282 (332)
. ......++..+.+.|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 235678999999999999999986
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=1.7e-08 Score=91.83 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=61.1
Q ss_pred CCeEEEecCcchHHHHHHhcC---CCeEEEEeecCc-hhhHHHHHhc----Ccccccccc-cccCCCC-C-CccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD---PLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDW-CEAFSTY-P-RTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~---~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~-~e~~~~y-p-~sFDlVh~s 250 (332)
..+|||+|||+|.+++.|++. +. .|.++|. +++++.+.++ |+...++-. +.....+ + .+||+|++.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 568999999999999888764 22 4567777 7777666543 432111101 1111122 3 799999999
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
..+.|++ .|+.|+|+|||.+++...
T Consensus 150 ~~~~~~~---------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 150 AAASTIP---------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cCcchhh---------HHHHHhcCcCcEEEEEEc
Confidence 8876654 478899999999998543
No 86
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.76 E-value=2.1e-08 Score=91.80 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=60.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCC-C-CccceeEehhhhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTY-P-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~y-p-~sFDlVh~s~vf~ 254 (332)
..+|||+|||+|.+++.|++.---.-.|+.+|. +++++.+.++ |+....-..+..+..+ + ..||+|++...++
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGP 156 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcc
Confidence 578999999999999888765110114677777 7788777665 3211100111222333 4 8899999987665
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
++ ..++.+.|||||.+++-.
T Consensus 157 ~~---------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 157 DI---------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc---------hHHHHHhhCCCcEEEEEE
Confidence 43 346677899999999854
No 87
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.75 E-value=2e-08 Score=91.63 Aligned_cols=92 Identities=16% Similarity=0.033 Sum_probs=60.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc-CCCCC--CccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA-FSTYP--RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~-~~~yp--~sFDlVh~s~vf 253 (332)
..+|||+|||+|.+++.|++..-....|.++|. +++++.|.++ |+-. ++-.+.. ...++ ..||+|+++...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcccCCCCEEEEcCCc
Confidence 568999999999999999876321113567777 7777776654 4311 1111111 12222 789999998654
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.+ +..++.+.|+|||++++.-
T Consensus 157 ~~---------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 157 PK---------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cc---------ccHHHHHhcCcCcEEEEEE
Confidence 43 4456789999999999854
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.74 E-value=3.1e-08 Score=99.05 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=71.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHH----hcCccc--cc-ccccccCCCCC-CccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY----DRGLIG--TY-HDWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~----eRGlig--~~-~d~~e~~~~yp-~sFDlVh~s~v 252 (332)
...|||+|||.|.|+.+|+.+.-- .+++++|. +.++..+. .+|+.. .+ .|.-+.+..+| ++||.|+++.-
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 457999999999999999986321 26777877 66655444 345422 11 11111123577 99999998633
Q ss_pred hccccc---cCCHHHHHHHHHhhhcCCcEEEEEcC-hhHHHHHHHHH
Q 020011 253 FTAESH---RCDMKFVLLEMDRILRPNGYVIVRES-SYFIDAVATIA 295 (332)
Q Consensus 253 f~h~~~---~c~~~~iL~EmdRVLRPGG~lii~d~-~~~~~~i~~i~ 295 (332)
..+... |-....+|.|+.|+|||||.+.+... .++.+.+.+..
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF 248 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence 221111 11125799999999999999988554 44445544443
No 89
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.74 E-value=4.2e-08 Score=95.64 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcc-------cccccc-cccCCCCCCccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLI-------GTYHDW-CEAFSTYPRTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGli-------g~~~d~-~e~~~~yp~sFDlVh~s~v 252 (332)
..+|||+|||+|.++..|++++. +|+++|. +++++.+.++.-. +....+ +..+...+++||+|.|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 45899999999999999999875 6789999 9999988877311 000111 1122233589999999999
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+|+++ .....++..+.+ +.+||.++...+
T Consensus 222 L~H~p~-~~~~~ll~~l~~-l~~g~liIs~~p 251 (315)
T PLN02585 222 LIHYPQ-DKADGMIAHLAS-LAEKRLIISFAP 251 (315)
T ss_pred EEecCH-HHHHHHHHHHHh-hcCCEEEEEeCC
Confidence 999874 234556777765 456666554433
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=98.73 E-value=5.4e-08 Score=89.26 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=71.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCCC-CccceeEehhhhcc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~yp-~sFDlVh~s~vf~h 255 (332)
..+|||+|||+|.++..++..+. -.++.+|. +.++..+.++ |+...++. .+....++ ++||+|+++--+.+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~-~d~~~~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRR-GDWARAVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-CchhhhccCCCeeEEEECCCCCC
Confidence 46899999999999999888654 25677887 7777766553 33111110 11122346 89999999743221
Q ss_pred ccc------------------cCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcCcce
Q 020011 256 ESH------------------RCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGMKWS 301 (332)
Q Consensus 256 ~~~------------------~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l~W~ 301 (332)
-.. ...+..++.++.|+|||||.+++..... ....+.+.+++-.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLD 178 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCC
Confidence 100 0114568899999999999999843321 223444444444443
No 91
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.71 E-value=1.3e-07 Score=90.61 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=77.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccccccccccc-cCCCCC-CccceeEeh----
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCE-AFSTYP-RTYDLLHLD---- 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e-~~~~yp-~sFDlVh~s---- 250 (332)
..+|||+|||+|.++.+|+.... ...|+++|. +.++..|.++ |+...+.-.+. .+.+++ ++||+|.|+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 46899999999999999987521 125778888 8888877665 44211111111 234456 689999986
Q ss_pred --hh-------hcccccc---------CCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcce
Q 020011 251 --GL-------FTAESHR---------CDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWS 301 (332)
Q Consensus 251 --~v-------f~h~~~~---------c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~ 301 (332)
.. +.|.+.. .....++.++.++|+|||++++...... +.++++.....|.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFT 268 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCc
Confidence 11 1222110 0124689999999999999998776544 6778877654443
No 92
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.71 E-value=7.5e-08 Score=93.18 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=88.5
Q ss_pred ccccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccc
Q 020011 153 ASAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLI 227 (332)
Q Consensus 153 ~~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gli 227 (332)
...|-.+++--.+.+..+...+ ... ..+|||+|||+|-++.+-++.|.- .|.++|. +.++..+.+. |+-
T Consensus 137 g~AFGTG~H~TT~lcl~~l~~~--~~~--g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~ 210 (295)
T PF06325_consen 137 GMAFGTGHHPTTRLCLELLEKY--VKP--GKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVE 210 (295)
T ss_dssp TSSS-SSHCHHHHHHHHHHHHH--SST--TSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred CCcccCCCCHHHHHHHHHHHHh--ccC--CCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCC
Confidence 3558888888777777766543 222 469999999999888776666652 3566777 6666666555 332
Q ss_pred cccccccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcCcceeeec
Q 020011 228 GTYHDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 228 g~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l~W~~~~~ 305 (332)
..+. .. .....+ ..||+|.|+-+.. -+..++.++.+.|+|||+||++.-.. ..+.|.+.++. .+++...
T Consensus 211 ~~~~-v~-~~~~~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 211 DRIE-VS-LSEDLVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp TCEE-ES-CTSCTCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred eeEE-EE-EecccccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 2221 01 123455 9999999984332 23568888999999999999999653 35666666665 6666544
No 93
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.71 E-value=9.9e-08 Score=84.23 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCCC-CccceeEehhhhcc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~yp-~sFDlVh~s~vf~h 255 (332)
..+|||+|||+|.++..|+.+..- ..|+.+|. +++++.+.+. ++....-.++..+...+ ..||+|.|+-=|+.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999987543 24677787 7788777553 33211111233345566 99999999844332
Q ss_pred ccc--cCCHHHHHHHHHhhhcCCcEEEEEc--ChhHHHHHHHHHh
Q 020011 256 ESH--RCDMKFVLLEMDRILRPNGYVIVRE--SSYFIDAVATIAK 296 (332)
Q Consensus 256 ~~~--~c~~~~iL~EmdRVLRPGG~lii~d--~~~~~~~i~~i~~ 296 (332)
-.+ ......++.+..+.|||||.|++.- ....-..++++..
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 110 1124679999999999999885543 3333333444433
No 94
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.71 E-value=2.7e-08 Score=95.79 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=69.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC---cc-----cccccccccCCCCCC-----cccee
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG---LI-----GTYHDWCEAFSTYPR-----TYDLL 247 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG---li-----g~~~d~~e~~~~yp~-----sFDlV 247 (332)
..+|||+|||+|.++..|++...-..+++++|. +++|+.+.++- .+ +...|.++. .+++. ...++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~-~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP-LALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch-hhhhcccccCCeEEE
Confidence 467999999999999999876311236899999 99998887761 11 122222222 22332 23455
Q ss_pred EehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 248 HLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 248 h~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
++...|.|+. +.+...+|.++.++|+|||.|+|..
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5667788876 4567789999999999999999844
No 95
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.68 E-value=1.1e-07 Score=89.57 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=83.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCC-CCCccceeEehhh---
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFST-YPRTYDLLHLDGL--- 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~-yp~sFDlVh~s~v--- 252 (332)
..+|||+|||+|.++..|++..- ...|+++|. +.+++.+.+. |+--...|+.+.+.. +...||+|.++-=
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 35799999999999998876421 125677888 7888777654 221111222221111 2357999998721
Q ss_pred ---hccccc-------cC----------CHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeeccccc
Q 020011 253 ---FTAESH-------RC----------DMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKEDTEY 309 (332)
Q Consensus 253 ---f~h~~~-------~c----------~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~~~e~ 309 (332)
+..+++ +. .+..++..+.++|+|||.+++.-..+....+..+++...++..+..+++
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 111110 00 0246888888999999999998877777888888888888877776654
No 96
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.64 E-value=2.9e-08 Score=80.68 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=66.5
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC----c---cccc-ccccccCCCCC-CccceeEehhh
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG----L---IGTY-HDWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG----l---ig~~-~d~~e~~~~yp-~sFDlVh~s~v 252 (332)
.+|||+|||.|.|+.++.+.+ ..++.++|. +..++.+..+- + +..+ .|..+....++ ++||+|.++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 379999999999999998877 236788888 77777776542 2 1111 11111112466 99999999876
Q ss_pred hcccc-----ccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAES-----HRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~-----~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+.... .......++.++.|+|||||.+++.-+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 65321 112345789999999999999998654
No 97
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.62 E-value=1.6e-07 Score=85.17 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=62.0
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--ccccccccCCCCC--CccceeEehh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYHDWCEAFSTYP--RTYDLLHLDG 251 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~d~~e~~~~yp--~sFDlVh~s~ 251 (332)
...+|||+|||+|.++..|++... .+..+|. +++++.+.++ |+.. ..+ ...+..++ ++||+|+++.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEcc
Confidence 357899999999999988877643 4566777 7777766654 3321 111 11223343 7899999987
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
.+++ +..++.+.|+|||.+++.-.
T Consensus 153 ~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 6554 34567899999999998655
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.61 E-value=2.7e-07 Score=93.19 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=88.2
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cc-ccc-cccccccCCCCC--CccceeEehhhh
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GL-IGT-YHDWCEAFSTYP--RTYDLLHLDGLF 253 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gl-ig~-~~d~~e~~~~yp--~sFDlVh~s~vf 253 (332)
.+|||+|||+|.++..|+.... ..+++++|. +.+++.+.++ |+ +-. ..|+.+. .+| .+||+|.|+-=.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~--~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDT--DMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc--ccccCCCccEEEECCCC
Confidence 4899999999999998876421 125678888 8888887765 22 111 1222221 233 679999995311
Q ss_pred -------------cccc--------cc-CCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeeccccccc
Q 020011 254 -------------TAES--------HR-CDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKEDTEYGV 311 (332)
Q Consensus 254 -------------~h~~--------~~-c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~~~e~~~ 311 (332)
.|.+ +. .-+..++.+..+.|+|||++++--..+..+.+++++++..|..... ..|-.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v-~kDl~ 408 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVET-LPDLA 408 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEE-EEcCC
Confidence 0100 00 0123578888899999999998777777788899888877764332 23334
Q ss_pred ccceEEEEEec
Q 020011 312 EKEKLLLCQKK 322 (332)
Q Consensus 312 ~~e~~li~~K~ 322 (332)
+.++++++++.
T Consensus 409 G~dR~v~~~~~ 419 (423)
T PRK14966 409 GLDRVTLGKYM 419 (423)
T ss_pred CCcEEEEEEEh
Confidence 67899988754
No 99
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.8e-07 Score=85.72 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=100.9
Q ss_pred cccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccc
Q 020011 156 FKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTY 230 (332)
Q Consensus 156 F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~ 230 (332)
...|++.+...+... ++... . +|||+|||+|..|.+|+..... .+|.++|. ++++..|.+. |+...+
T Consensus 92 Pr~dTe~Lve~~l~~---~~~~~---~-~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 92 PRPDTELLVEAALAL---LLQLD---K-RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred cCCchHHHHHHHHHh---hhhcC---C-cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 345788887776521 21111 1 8999999999999999987542 36788999 8888877655 431111
Q ss_pred ccccccCCCCCCccceeEehhhhcccccc------------------------CCHHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 231 HDWCEAFSTYPRTYDLLHLDGLFTAESHR------------------------CDMKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 231 ~d~~e~~~~yp~sFDlVh~s~vf~h~~~~------------------------c~~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
.--+.-|.+.+.+||+|.|+= -|++.. ..+..++.+..++|+|||++++.....
T Consensus 164 ~~~~dlf~~~~~~fDlIVsNP--PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~ 241 (280)
T COG2890 164 VVQSDLFEPLRGKFDLIVSNP--PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT 241 (280)
T ss_pred EEeeecccccCCceeEEEeCC--CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence 111122455557999999961 111110 012248999999999999999988877
Q ss_pred HHHHHHHHHhcCcceeeecccccccccceEEEEEe
Q 020011 287 FIDAVATIAKGMKWSCHKEDTEYGVEKEKLLLCQK 321 (332)
Q Consensus 287 ~~~~i~~i~~~l~W~~~~~~~e~~~~~e~~li~~K 321 (332)
..+.++++.....+-.....+.+..+.+++++.++
T Consensus 242 q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 242 QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred cHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 77888888888875222222333345667776654
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.61 E-value=2.3e-07 Score=95.63 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=87.3
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Ccccccccc-cccCCCCC-CccceeEehh--
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDW-CEAFSTYP-RTYDLLHLDG-- 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~-~e~~~~yp-~sFDlVh~s~-- 251 (332)
..+|||+|||+|.++.+|+.. +- ..|+++|. +.+++.|.+. |+...+.-. ++.+..++ ++||+|+|+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCC
Confidence 457999999999999888764 22 25678888 7888887765 332111101 12233455 7899999941
Q ss_pred ------------hhccccc------c---CCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeecccccc
Q 020011 252 ------------LFTAESH------R---CDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKEDTEYG 310 (332)
Q Consensus 252 ------------vf~h~~~------~---c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~~~e~~ 310 (332)
+..|.+. . ..+..++.++.++|+|||.+++.-....-+++..++....|+.... ..|-
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~-~~D~ 295 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESV-YKDL 295 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEE-EecC
Confidence 2222210 0 1123588899999999999999776666677888877777764332 2233
Q ss_pred cccceEEEEE
Q 020011 311 VEKEKLLLCQ 320 (332)
Q Consensus 311 ~~~e~~li~~ 320 (332)
.+.++++++.
T Consensus 296 ~g~~R~v~~~ 305 (506)
T PRK01544 296 QGHSRVILIS 305 (506)
T ss_pred CCCceEEEec
Confidence 3567777764
No 101
>PTZ00146 fibrillarin; Provisional
Probab=98.59 E-value=1.1e-07 Score=91.99 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=61.5
Q ss_pred CCeEEEecCcchHHHHHHhcCC-CeEEEEeecCc-----hhhHHHHHhc-CcccccccccccC-CCCC-CccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDP-LWVMNVVSSYA-----ANTLAVVYDR-GLIGTYHDWCEAF-STYP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~-v~vmnv~p~d~-----~~~l~~a~eR-Glig~~~d~~e~~-~~yp-~sFDlVh~s~v 252 (332)
..+|||+|||+|+++.+|++.- --. .|..+|. .+++..+.+| .+.....|..... ...+ .+||+|.++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G-~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEG-VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCC-EEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 4689999999999999998851 000 2334444 3567777665 3333333322211 1123 78999999863
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEE
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVR 282 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~ 282 (332)
. + .+...++.|+.|+|||||.|+|.
T Consensus 212 ~---p--dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 Q---P--DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C---c--chHHHHHHHHHHhccCCCEEEEE
Confidence 1 2 23445778999999999999994
No 102
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.58 E-value=6.6e-08 Score=89.23 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCccc-ccccccccCCCCCCccceeEehhhhcc
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIG-TYHDWCEAFSTYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig-~~~d~~e~~~~yp~sFDlVh~s~vf~h 255 (332)
+.....++|||+|+|.|.++.+++++.-- +.++-.|.|..++.+.+..-+. .-+| -|.++|. +|++..+++||+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v~~~~~~~~rv~~~~gd---~f~~~P~-~D~~~l~~vLh~ 170 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDLPEVIEQAKEADRVEFVPGD---FFDPLPV-ADVYLLRHVLHD 170 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE-HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEESSGGG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCC-CcceeeccHhhhhcccccccccccccc---HHhhhcc-ccceeeehhhhh
Confidence 34456789999999999999999875211 1345566677777766622111 1122 2467888 999999999999
Q ss_pred ccccCCHHHHHHHHHhhhcCC--cEEEEEcCh
Q 020011 256 ESHRCDMKFVLLEMDRILRPN--GYVIVRESS 285 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPG--G~lii~d~~ 285 (332)
+++ .+...+|+.+.+.|+|| |.|+|.|..
T Consensus 171 ~~d-~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 171 WSD-EDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp S-H-HHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cch-HHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 985 56788999999999999 999998844
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.58 E-value=4.1e-07 Score=88.19 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=75.1
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc-CCCCC-CccceeEehh----
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA-FSTYP-RTYDLLHLDG---- 251 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~-~~~yp-~sFDlVh~s~---- 251 (332)
.+|||+|||+|.++.+|+...- ...|+++|. +.+++.|.+. |+...+.-.+.. +...| ++||+|.|+-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 5799999999999999987531 135788888 8888877665 332111111122 23456 7899999961
Q ss_pred ---------hhcccccc---------CCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhc--Ccc
Q 020011 252 ---------LFTAESHR---------CDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKG--MKW 300 (332)
Q Consensus 252 ---------vf~h~~~~---------c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~--l~W 300 (332)
.+.|.+.. .....++.++.+.|+|||.+++-.... ...+.++... +.|
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE
Confidence 11232211 113468999999999999999966554 3456666554 445
No 104
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.55 E-value=1.1e-07 Score=89.48 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=74.7
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccC--------CCCCCccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAF--------STYPRTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~--------~~yp~sFDlVh~s~v 252 (332)
-|.++|+|||+|-.+.-+++..- +|+++|. +.||++|... ....+|+--..+ +--++|.|||.|.+.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 45899999999955555555543 6788888 9999988754 333333221221 112599999999999
Q ss_pred hccccccCCHHHHHHHHHhhhcCCc-EEEE---EcChhHHHHHHHHHhcCcce
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNG-YVIV---RESSYFIDAVATIAKGMKWS 301 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG-~lii---~d~~~~~~~i~~i~~~l~W~ 301 (332)
+|. |+.+.++.++.|||||.| .+.+ +|......++-.+..+++|+
T Consensus 110 ~HW----Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 VHW----FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred HHh----hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 985 678999999999999877 4433 32222234444555555554
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.55 E-value=4.6e-07 Score=81.33 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=67.8
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--ccc-cccccCCCCCCccceeEehhh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYH-DWCEAFSTYPRTYDLLHLDGL 252 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~-d~~e~~~~yp~sFDlVh~s~v 252 (332)
...+|||+|||+|.++..++...- ...|+.+|. +++++.+.++ |+.. .++ |..+.+......+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 356899999999999988865321 125677787 7787776653 3311 111 11011111223467665531
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGM 298 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l 298 (332)
...+..++.++.|+|+|||.+++..... .+..+.+..+.+
T Consensus 118 ------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 118 ------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred ------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 2356789999999999999999987653 334455555444
No 106
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.55 E-value=2.1e-07 Score=86.14 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=74.6
Q ss_pred ccccccchhhHHHHHHHHHhhcC------------CCCC-CCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCchhhH
Q 020011 153 ASAFKHDDSKWNVRVKHYKKLLP------------ALGT-DKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYAANTL 218 (332)
Q Consensus 153 ~~~F~~d~~~W~~~v~~y~~~l~------------~l~~-~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~~~~l 218 (332)
.++|.+|-+.|...-.-|..... .|.. ...-.|=|||||-+.+|+.+.+. .|.-.+++....
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~---- 106 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNP---- 106 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SST----
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCC----
Confidence 45566666666554444443321 1111 22457999999999999887543 233323332211
Q ss_pred HHHHhcCcccccccccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChh---HHHHHHHH
Q 020011 219 AVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSY---FIDAVATI 294 (332)
Q Consensus 219 ~~a~eRGlig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~---~~~~i~~i 294 (332)
.++ .-|. +-.|.+ .+.|++.+...|. .-+..+++.|..|||||||.|+|.+-.. -++...+.
T Consensus 107 ------~Vt--acdi--a~vPL~~~svDv~VfcLSLM----GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~ 172 (219)
T PF05148_consen 107 ------RVT--ACDI--ANVPLEDESVDVAVFCLSLM----GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKA 172 (219)
T ss_dssp ------TEE--ES-T--TS-S--TT-EEEEEEES-------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHH
T ss_pred ------CEE--EecC--ccCcCCCCceeEEEEEhhhh----CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHH
Confidence 111 1111 234677 9999999997776 3578999999999999999999988542 23444555
Q ss_pred HhcCcceeeecccc
Q 020011 295 AKGMKWSCHKEDTE 308 (332)
Q Consensus 295 ~~~l~W~~~~~~~e 308 (332)
.+++-.+....|..
T Consensus 173 ~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 173 LKKLGFKLKSKDES 186 (219)
T ss_dssp HHCTTEEEEEEE--
T ss_pred HHHCCCeEEecccC
Confidence 77888888776543
No 107
>PRK04457 spermidine synthase; Provisional
Probab=98.54 E-value=6.6e-07 Score=84.81 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=67.2
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc-Ccccc---cccc-ccc---CCCCCCccceeEehh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR-GLIGT---YHDW-CEA---FSTYPRTYDLLHLDG 251 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR-Glig~---~~d~-~e~---~~~yp~sFDlVh~s~ 251 (332)
..++|||+|||.|.++.+|++..- ...++.+|. ++.++.|.+. ++.+. ++-. +++ +...+.+||+|.++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 467899999999999999877531 235677888 8899888876 22211 1111 111 22345789999986
Q ss_pred hhcc--ccccCCHHHHHHHHHhhhcCCcEEEEE
Q 020011 252 LFTA--ESHRCDMKFVLLEMDRILRPNGYVIVR 282 (332)
Q Consensus 252 vf~h--~~~~c~~~~iL~EmdRVLRPGG~lii~ 282 (332)
.|+. .+.......++.++.++|+|||.+++.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3332 121122368999999999999999984
No 108
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.54 E-value=2.3e-07 Score=90.21 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=73.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccC--CCCC-CccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAF--STYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~--~~yp-~sFDlVh~s~vf 253 (332)
..+|||.|||+|+++..++..+. .+.++|. +.+++.+..+ |+.. ++-.+..+ .+++ ++||+|.++--+
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCC
Confidence 56899999999999877666554 5678888 7777765543 4432 11111111 2455 899999996222
Q ss_pred cc---cc---ccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcc
Q 020011 254 TA---ES---HRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKW 300 (332)
Q Consensus 254 ~h---~~---~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W 300 (332)
.. .. .......+|.++.|+|||||++++..+... .++++++..-|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence 11 00 012246899999999999999998876652 44556677666
No 109
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.52 E-value=6.4e-07 Score=83.67 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=86.3
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccc--cccccccCCCCC-CccceeEehhh
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGT--YHDWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~--~~d~~e~~~~yp-~sFDlVh~s~v 252 (332)
+.....+-|||+|||+|--++.|.+.|- -.+++|. +.||++|.+|-+-|. +.|..+.+ ||+ +|||-+++-..
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~Gl-pfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGL-PFRPGTFDGVISISA 121 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCC-CCCCCccceEEEeee
Confidence 5555677899999999999999999884 3578899 999999999866653 35555564 566 99998887655
Q ss_pred hc---cccccCC-----HHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcce
Q 020011 253 FT---AESHRCD-----MKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWS 301 (332)
Q Consensus 253 f~---h~~~~c~-----~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~ 301 (332)
++ |....++ +..++.-+..+|++|+..++.=-++....++.|...-.|.
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 43 2211121 2347888999999999999987665545555554444443
No 110
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=3.3e-07 Score=86.32 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=78.1
Q ss_pred eEEEecCcchHHHHHHhcCCC-eEEEEeecCc-hhhHHHHHhcC------cccccccccccCC--CCC-CccceeEehhh
Q 020011 184 NVMDMNTLYGGFAAAVIDDPL-WVMNVVSSYA-ANTLAVVYDRG------LIGTYHDWCEAFS--TYP-RTYDLLHLDGL 252 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v-~vmnv~p~d~-~~~l~~a~eRG------lig~~~d~~e~~~--~yp-~sFDlVh~s~v 252 (332)
.||.+|||.|++.--|.+... -.+.|...|. ++++....++- .-..++|.+..-+ +.+ +++|+|.+-.|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999998877776432 1134667777 88888877763 2456677766532 333 99999999999
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|+-+. +..+..++..+.|+|||||.++++|=
T Consensus 154 LSAi~-pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 154 LSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EeccC-hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99987 46788999999999999999999983
No 111
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.46 E-value=4.2e-07 Score=83.10 Aligned_cols=129 Identities=16% Similarity=0.257 Sum_probs=76.4
Q ss_pred cccccchhhHHHHHHHHH-hhcCCCCCCCCCeEEEecCcch----HHHHHHhc--C--CCeEEEEeecCc-hhhHHHHHh
Q 020011 154 SAFKHDDSKWNVRVKHYK-KLLPALGTDKIRNVMDMNTLYG----GFAAAVID--D--PLWVMNVVSSYA-ANTLAVVYD 223 (332)
Q Consensus 154 ~~F~~d~~~W~~~v~~y~-~~l~~l~~~~~r~VLD~GCG~G----gfaa~L~~--~--~v~vmnv~p~d~-~~~l~~a~e 223 (332)
..|-.|..+|..-.+.-. .++.....+..-+|+.+||++| ++|..|.+ . ..+-+.|.+.|. +..|+.|.
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar- 81 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR- 81 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH-
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH-
Confidence 346667778876665443 2332223345678999999999 56666666 1 224568899999 88888875
Q ss_pred cCc---------c------------c---------------ccccccccCCCCCCccceeEehhhhccccccCCHHHHHH
Q 020011 224 RGL---------I------------G---------------TYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKFVLL 267 (332)
Q Consensus 224 RGl---------i------------g---------------~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~ 267 (332)
+|. . | ..|++++ ..+.++.||+|.|-+||-|+.. .....++.
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~ 159 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLR 159 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHH
Confidence 342 0 0 1233322 1122299999999999999963 45678999
Q ss_pred HHHhhhcCCcEEEEEcCh
Q 020011 268 EMDRILRPNGYVIVRESS 285 (332)
Q Consensus 268 EmdRVLRPGG~lii~d~~ 285 (332)
-+.+.|+|||+|++....
T Consensus 160 ~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 160 RLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHGGGEEEEEEEEE-TT-
T ss_pred HHHHHcCCCCEEEEecCc
Confidence 999999999999997754
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.45 E-value=1.1e-06 Score=83.09 Aligned_cols=121 Identities=11% Similarity=0.186 Sum_probs=85.8
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cc---ccccccccccCC-CCC-CccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GL---IGTYHDWCEAFS-TYP-RTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Gl---ig~~~d~~e~~~-~yp-~sFDlVh~s 250 (332)
..+|||+|||.|..+-.|+++ .- ..|++++. +.+.+.|.+. ++ +-++|+--..+. ..+ .+||+|.|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 678999999999999999988 32 24566666 5566555433 12 222221111112 244 679999996
Q ss_pred hhh---------------ccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeee
Q 020011 251 GLF---------------TAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHK 304 (332)
Q Consensus 251 ~vf---------------~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~ 304 (332)
==+ .|..-.|+.++++.-..++|||||.+.+.-+++-+.++-+++++++|....
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 222 122234778889999999999999999999999999999999999998754
No 113
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.44 E-value=3.2e-07 Score=80.45 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=52.7
Q ss_pred ecCc-hhhHHHHHhcCc---------ccccccccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEE
Q 020011 211 SSYA-ANTLAVVYDRGL---------IGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYV 279 (332)
Q Consensus 211 p~d~-~~~l~~a~eRGl---------ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~l 279 (332)
++|. ++||++|.+|-- +..++.-++. ++|+ ++||+|.+..+++|++ +...+|.|+.|+|||||.|
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence 5677 889999866521 1111111222 3677 8999999999999986 4679999999999999999
Q ss_pred EEEcCh
Q 020011 280 IVRESS 285 (332)
Q Consensus 280 ii~d~~ 285 (332)
++.|..
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 988743
No 114
>PRK00811 spermidine synthase; Provisional
Probab=98.43 E-value=6.2e-07 Score=85.86 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=65.2
Q ss_pred CCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcC------c-----ccccccccccCCCCC-Cccc
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRG------L-----IGTYHDWCEAFSTYP-RTYD 245 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRG------l-----ig~~~d~~e~~~~yp-~sFD 245 (332)
...++|||+|||.|+++..++++ ++ ..|+.+|. +.+++.+.+.- + +-.++.-+..+...+ ++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 34789999999999999999887 44 24566666 77787776531 1 011111111122224 8999
Q ss_pred eeEehhhhccccccC-CHHHHHHHHHhhhcCCcEEEEEc
Q 020011 246 LLHLDGLFTAESHRC-DMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 246 lVh~s~vf~h~~~~c-~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+|.+...-.+.+... --..++.++.|+|+|||.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 999864322211100 11468899999999999999964
No 115
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.40 E-value=1.2e-06 Score=83.47 Aligned_cols=119 Identities=18% Similarity=0.286 Sum_probs=81.1
Q ss_pred ccccccccchhhHHHHHHHHHhhcCCCCC-CCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcc-
Q 020011 151 GSASAFKHDDSKWNVRVKHYKKLLPALGT-DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLI- 227 (332)
Q Consensus 151 ~~~~~F~~d~~~W~~~v~~y~~~l~~l~~-~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGli- 227 (332)
+...||---.+++++-+..-.. ...+ ....++||+|||-|+.+..|+..-- +|...+. .-|...-.+||..
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~---~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~kg~~v 139 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGF---SWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKKGFTV 139 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhcc---CCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhCCCeE
Confidence 3456666666666654432110 0111 2467899999999999999977432 3444455 6688788888873
Q ss_pred cccccccccCCCCCCccceeEehhhhccccccCCH-HHHHHHHHhhhcCCcEEEEEc
Q 020011 228 GTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDM-KFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 228 g~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~-~~iL~EmdRVLRPGG~lii~d 283 (332)
-...+|-+. +..||+|-|-+||. ||+- ..+|.+|++.|+|+|.+++.-
T Consensus 140 l~~~~w~~~----~~~fDvIscLNvLD----Rc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 140 LDIDDWQQT----DFKFDVISCLNVLD----RCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred Eehhhhhcc----CCceEEEeehhhhh----ccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 233344321 36899999999996 5544 579999999999999999965
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.40 E-value=1.4e-06 Score=87.78 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=66.0
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccc--ccccccC-CCC--C-CccceeEe
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTY--HDWCEAF-STY--P-RTYDLLHL 249 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~--~d~~e~~-~~y--p-~sFDlVh~ 249 (332)
...+|||||||+|+++.++++.-- ...|+.+|. ++++..+.++ |+...+ .+ +... .++ + .+||.|.+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCEEEE
Confidence 357899999999999998887421 124677788 7777766554 442111 11 1121 122 4 78999995
Q ss_pred h------hhhcccccc------C-------CHHHHHHHHHhhhcCCcEEEEEc
Q 020011 250 D------GLFTAESHR------C-------DMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 250 s------~vf~h~~~~------c-------~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. .++.+.++- . ....+|.++.|+|||||.++++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 456554320 0 02469999999999999999986
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=2.1e-06 Score=86.59 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccccc--cccccccCCC-CC-CccceeEe--
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGT--YHDWCEAFST-YP-RTYDLLHL-- 249 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~--~~d~~e~~~~-yp-~sFDlVh~-- 249 (332)
...+|||+|||+|+++.++++...- ..|+.+|. +.+++.+.++ |+... .+|..+ ... ++ .+||+|.+
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~-~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD-PAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc-chhhcccCCCCEEEECC
Confidence 3568999999999999999876321 25678888 7777776554 33111 122111 122 44 78999994
Q ss_pred --hh--hhcccc------ccC-------CHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 250 --DG--LFTAES------HRC-------DMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 250 --s~--vf~h~~------~~c-------~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+. ++.+-+ ... ....+|.++.++|||||.++++..
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 32 222111 000 123689999999999999998873
No 118
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.36 E-value=9.5e-07 Score=86.76 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=67.3
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC---------------cccccccccccCC-----C
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG---------------LIGTYHDWCEAFS-----T 239 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG---------------lig~~~d~~e~~~-----~ 239 (332)
...+|||||||-||=..-....++ -.++++|. ...++.|.+|- .....+ .+..+. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~-~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFI-AADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEE-ESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhhee-ccccccchhhhh
Confidence 467899999999995544455554 25688888 88888888884 111110 011111 2
Q ss_pred CC---CccceeEehhhhcccc-ccCCHHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 240 YP---RTYDLLHLDGLFTAES-HRCDMKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 240 yp---~sFDlVh~s~vf~h~~-~~c~~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
|+ ..||+|-|-..|||.- +......+|.-+...|||||+||.+.+..
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 33 5999999999999853 33334569999999999999999988775
No 119
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.34 E-value=1.7e-06 Score=87.68 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCC-C-CccceeEeh---
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTY-P-RTYDLLHLD--- 250 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~y-p-~sFDlVh~s--- 250 (332)
...+|||+|||+|+++.+|++.---.-.|+.+|. +.+++.+.++ |+.. +.-.+.....+ + .+||+|.+.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEEEcCCC
Confidence 3578999999999988877763100014677787 7777666544 4421 11111222222 4 789999953
Q ss_pred ---hhhcccc------ccCC-------HHHHHHHHHhhhcCCcEEEEEcC
Q 020011 251 ---GLFTAES------HRCD-------MKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 251 ---~vf~h~~------~~c~-------~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
.++.+-+ ...+ ...+|.++.++|||||.++++..
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2222111 0011 23589999999999999999883
No 120
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.34 E-value=1.8e-06 Score=81.82 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC--ccccccc-----c-ccc--CC-CCCCccce
Q 020011 179 TDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG--LIGTYHD-----W-CEA--FS-TYPRTYDL 246 (332)
Q Consensus 179 ~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG--lig~~~d-----~-~e~--~~-~yp~sFDl 246 (332)
..+.++||++|||.|+++..+.+... +.+++.+|. ++.++.+.+.- +-+.+.+ . .++ +. ..+++||+
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 33467999999999999998887652 234566666 66777666531 0010000 0 111 11 12489999
Q ss_pred eEehhhhccccccCC--HHHHHHHHHhhhcCCcEEEEEcC
Q 020011 247 LHLDGLFTAESHRCD--MKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 247 Vh~s~vf~h~~~~c~--~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|.++.....-+ ... ...++..+.|+|+|||.+++...
T Consensus 149 Ii~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 99875422111 112 35788999999999999998754
No 121
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.34 E-value=1.5e-06 Score=79.20 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=69.4
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhH----HHHHhcCcccccccccccCC----CCC-CccceeEehhhh
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTL----AVVYDRGLIGTYHDWCEAFS----TYP-RTYDLLHLDGLF 253 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l----~~a~eRGlig~~~d~~e~~~----~yp-~sFDlVh~s~vf 253 (332)
.+||+|||.|.|..+++...-- .|+.+++. .+.+ ..+..+|+....--.+++.. .++ +++|-||...==
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999999999876321 26777777 4444 44444566332221122211 245 999998876221
Q ss_pred -----ccccccCCHHHHHHHHHhhhcCCcEEEEEcCh-hHHHHHHHHHhc
Q 020011 254 -----TAESHRCDMKFVLLEMDRILRPNGYVIVRESS-YFIDAVATIAKG 297 (332)
Q Consensus 254 -----~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~-~~~~~i~~i~~~ 297 (332)
.|.+.|=--..+|.++.|+|+|||.|.+.... ++.+.+.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 13332222246999999999999999986544 556666665544
No 122
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=2.3e-06 Score=86.59 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=64.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--cc-ccccccCCCCCCccceeEehh-
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TY-HDWCEAFSTYPRTYDLLHLDG- 251 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~-~d~~e~~~~yp~sFDlVh~s~- 251 (332)
...+|||+|||+|+++.++++.-.-...|+.+|. +++++.+.++ |+.. .. .|..+...+++++||+|.++-
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 3568999999999999888874100125677788 7777766554 4321 11 121111123457899999752
Q ss_pred -----hhcccccc------CC-------HHHHHHHHHhhhcCCcEEEEEcC
Q 020011 252 -----LFTAESHR------CD-------MKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 252 -----vf~h~~~~------c~-------~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
++.|-++. .+ ...+|.++.|+|||||.++.+..
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 22221110 01 13589999999999999997653
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.27 E-value=4.3e-06 Score=84.50 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc---CC---CCC-CccceeE
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA---FS---TYP-RTYDLLH 248 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~---~~---~yp-~sFDlVh 248 (332)
...+|||+|||+|+.+.+|++.---.-.|+.+|. +.+++.+.++ |+.. +.-.+.. +. +++ ++||.|.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEE
Confidence 3568999999999999888774100014677777 7777666544 4321 1111111 11 133 7899999
Q ss_pred eh------hhhcccccc------CC-------HHHHHHHHHhhhcCCcEEEEEcC----hhHHHHHHHHHhc
Q 020011 249 LD------GLFTAESHR------CD-------MKFVLLEMDRILRPNGYVIVRES----SYFIDAVATIAKG 297 (332)
Q Consensus 249 ~s------~vf~h~~~~------c~-------~~~iL~EmdRVLRPGG~lii~d~----~~~~~~i~~i~~~ 297 (332)
+. .++.+-++. .+ ...+|.++.|+|||||.|+.+.. .+....|+.++++
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 63 344432210 01 24689999999999999998762 2334455555443
No 124
>PLN02366 spermidine synthase
Probab=98.27 E-value=2.3e-06 Score=83.29 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=62.8
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC------c----cccccccccc---CCCCC-Cccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG------L----IGTYHDWCEA---FSTYP-RTYD 245 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG------l----ig~~~d~~e~---~~~yp-~sFD 245 (332)
..++|||+|||.|+++.++++.+- +..|+-+|. +..++++.+.- + +-.++ ..+ +...+ +.||
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~-v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~--~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSS-VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI--GDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEE--ChHHHHHhhccCCCCC
Confidence 478999999999999999998742 224444555 56677765531 1 00111 111 12344 7899
Q ss_pred eeEehhhhccccccC-CHHHHHHHHHhhhcCCcEEEEEc
Q 020011 246 LLHLDGLFTAESHRC-DMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 246 lVh~s~vf~h~~~~c-~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+|++...-.+-+... --..++..+.|.|+|||.+++..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 999864322211100 01468999999999999998754
No 125
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.27 E-value=1.7e-06 Score=80.40 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=66.6
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEe-ecCchhhHHHHHhc-----Ccccccc-cccccCCCCCCccceeEehhhh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVV-SSYAANTLAVVYDR-----GLIGTYH-DWCEAFSTYPRTYDLLHLDGLF 253 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~-p~d~~~~l~~a~eR-----Glig~~~-d~~e~~~~yp~sFDlVh~s~vf 253 (332)
...++||.|||.|..+..|.-.-.-.++++ |+ +..++.|.+. +-++.+. .--+.|.|-+..||+|.|-.++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 467899999999999998866544444543 33 5667777632 2233221 1112233334799999999999
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.|+.| .++..+|.-...-|+|+|++++.++.
T Consensus 133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCH-HHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 99996 57889999999999999999998865
No 126
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.24 E-value=6.4e-06 Score=63.37 Aligned_cols=94 Identities=20% Similarity=0.189 Sum_probs=58.7
Q ss_pred EEEecCcchHH--HHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc-------ccccccccccCCCCCC--ccceeEehhh
Q 020011 185 VMDMNTLYGGF--AAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL-------IGTYHDWCEAFSTYPR--TYDLLHLDGL 252 (332)
Q Consensus 185 VLD~GCG~Ggf--aa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl-------ig~~~d~~e~~~~yp~--sFDlVh~s~v 252 (332)
|||+|||+|.. .+.+...+. .++++|. +.++..+..+.. .....+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA---YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc---eEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 99999999984 444444332 3344666 555555443321 1111221111245553 89999 6655
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
..|... ...++.++.|+|+|+|.+++....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 554432 678999999999999999998865
No 127
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.23 E-value=1.9e-06 Score=82.23 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=72.0
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccc-cCCCCC-CccceeEehhhhccccccC
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCE-AFSTYP-RTYDLLHLDGLFTAESHRC 260 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e-~~~~yp-~sFDlVh~s~vf~h~~~~c 260 (332)
-.|-|||||-+-+|.. ....|..+++++++. | ++ -|. +-.|.+ +|.|++.+...|. ..
T Consensus 182 ~vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~---------~-V~-----~cDm~~vPl~d~svDvaV~CLSLM----gt 241 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASS-ERHKVHSFDLVAVNE---------R-VI-----ACDMRNVPLEDESVDVAVFCLSLM----GT 241 (325)
T ss_pred eEEEecccchhhhhhc-cccceeeeeeecCCC---------c-ee-----eccccCCcCccCcccEEEeeHhhh----cc
Confidence 3489999999988862 223577777776654 1 00 122 124667 9999999886665 45
Q ss_pred CHHHHHHHHHhhhcCCcEEEEEcChhHH---HHHHHHHhcCcceeeeccc
Q 020011 261 DMKFVLLEMDRILRPNGYVIVRESSYFI---DAVATIAKGMKWSCHKEDT 307 (332)
Q Consensus 261 ~~~~iL~EmdRVLRPGG~lii~d~~~~~---~~i~~i~~~l~W~~~~~~~ 307 (332)
++.+++.|..|||||||.++|-+-..-. ..+.+-+.+|-.++...+.
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh
Confidence 7899999999999999999997744222 2233335677777766543
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.23 E-value=2.4e-06 Score=86.46 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=64.6
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--c-cccccccCCCCC-CccceeEeh-
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--T-YHDWCEAFSTYP-RTYDLLHLD- 250 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~-~~d~~e~~~~yp-~sFDlVh~s- 250 (332)
...+|||+|||+|+.+.++++.---.-.|+.+|. +++++.+.++ |+.. . ..|. ..+..+. ++||.|.++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da-~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA-ERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch-hhhhhhhhccCCEEEECC
Confidence 3568999999999999888764100115677788 7787776655 4421 1 1221 1122244 789999973
Q ss_pred -----hhhccccc------cC-------CHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 251 -----GLFTAESH------RC-------DMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 251 -----~vf~h~~~------~c-------~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.++.+-++ .. ....+|.+..+.|||||.++.+...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22221110 00 1135799999999999999998743
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.22 E-value=3.1e-06 Score=90.48 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=77.3
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccc-ccc----ccccccCCCCCCccceeEeh-
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLI-GTY----HDWCEAFSTYPRTYDLLHLD- 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gli-g~~----~d~~e~~~~yp~sFDlVh~s- 250 (332)
.++|||+|||+|+|+.+++..|.. .|+.+|. +.+++.+.+. |+- ..+ .|..+.+..+.++||+|.++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 478999999999999999988752 4678888 7788777664 332 111 11111111134789999996
Q ss_pred ----------hhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeec
Q 020011 251 ----------GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 251 ----------~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~ 305 (332)
.+++.. .+...++....++|+|||.+++.....-+....+.+..-.+.+...
T Consensus 617 P~f~~~~~~~~~~~~~---~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQ---RDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCccchhhhHH---HHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 111111 1245688899999999999998776654444455555555665543
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.21 E-value=4.5e-06 Score=81.77 Aligned_cols=92 Identities=18% Similarity=0.038 Sum_probs=58.2
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc-CC-CCC-CccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA-FS-TYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~-~~-~yp-~sFDlVh~s~vf 253 (332)
..+|||+|||+|.+++.|++...-.-.|+.+|. +++++.|.++ |+.. ++..+.. .. ..+ ..||+|++...+
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccccCCccEEEECCch
Confidence 468999999999999998874210012566777 7777766653 4311 1111111 11 122 689999998544
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.+ +...+.+.|||||.+++..
T Consensus 160 ~~---------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 DE---------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HH---------hHHHHHHhcCCCCEEEEEe
Confidence 33 3345678999999998854
No 131
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=5.5e-06 Score=80.30 Aligned_cols=177 Identities=15% Similarity=0.180 Sum_probs=97.9
Q ss_pred CCCCccccCCCCcccCCCCCccccccCCCCCCCccCCCCCcccccccc-ccccccccchhhHHHHHHHHHhhcCCCCCCC
Q 020011 103 EPDSAWYTPLRPCVVVPRPNLKKSVLESMPKWPERLHVAPERISDIHG-GSASAFKHDDSKWNVRVKHYKKLLPALGTDK 181 (332)
Q Consensus 103 ~~d~~Wy~~~~~Cl~p~P~~~~~~~~~~p~~WP~rl~~~p~rl~~~~g-~~~~~F~~d~~~W~~~v~~y~~~l~~l~~~~ 181 (332)
.-|++|-..+..+..+.|..... ...|=..+...+-++.+.+| .|......+++.-- ..+....
T Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl----------~~l~~~~ 158 (300)
T COG2813 94 KTDSARHCMRLHYYSENPPPFAD-----EPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLL----------ETLPPDL 158 (300)
T ss_pred ccchHhhcceeEeecCCCCcccc-----hhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHH----------HhCCccC
Confidence 56777777777766665543211 11121112212223434444 24444444443322 2222222
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccc-ccCCCCCCccceeEehhhhcc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWC-EAFSTYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~-e~~~~yp~sFDlVh~s~vf~h 255 (332)
.-+|||+|||+|-+++.|++..-. ..++-+|. ..+++.+.+. ++.+. ..|- ..+++-.+.||+|.|+==||.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v~~kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPVEGKFDLIISNPPFHA 236 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccccccccEEEeCCCccC
Confidence 238999999999999999987531 24555666 5566655443 34442 1111 123333379999999966653
Q ss_pred ccc--cCCHHHHHHHHHhhhcCCcEEEEEcC--hhHHHHHHHHHh
Q 020011 256 ESH--RCDMKFVLLEMDRILRPNGYVIVRES--SYFIDAVATIAK 296 (332)
Q Consensus 256 ~~~--~c~~~~iL~EmdRVLRPGG~lii~d~--~~~~~~i~~i~~ 296 (332)
=.. ......++.+..+-|++||.|.|..+ ..+-.+++++..
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 110 01113689999999999999988664 344455555544
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.19 E-value=6.3e-06 Score=77.97 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--ccccccccCCCCCCccceeEeh----
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYHDWCEAFSTYPRTYDLLHLD---- 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~d~~e~~~~yp~sFDlVh~s---- 250 (332)
..+|||+|||+|+++.+|++.-.-.-.|..+|. +.+++.+.++ |+.. .++.-...+......||.|.+.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 568999999999999888763100014677777 7777666544 4321 1111111122122679999863
Q ss_pred --hhhcccccc------C-------CHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 251 --GLFTAESHR------C-------DMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 251 --~vf~h~~~~------c-------~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
.++.+-++. . ....+|.++.++|||||+++.+..
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 222221110 0 113599999999999999999874
No 133
>PRK01581 speE spermidine synthase; Validated
Probab=98.19 E-value=4.3e-06 Score=83.31 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=66.4
Q ss_pred CCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc-Ccc----------c---ccccccccCCCC-CCc
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR-GLI----------G---TYHDWCEAFSTY-PRT 243 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR-Gli----------g---~~~d~~e~~~~y-p~s 243 (332)
...++||++|||.|++++.+.+.+. +..|+.+|. ++++++|.+. .+. . .+.|- ..+..- +++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da-~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA-KEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH-HHHHHhcCCC
Confidence 3468999999999999998888652 235667777 8889988852 110 0 01111 112222 378
Q ss_pred cceeEehhhhc--cccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 244 YDLLHLDGLFT--AESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 244 FDlVh~s~vf~--h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
||+|.++..-. .....---..++..+.|.|+|||.+++....
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99999983110 0000011146899999999999999987653
No 134
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.17 E-value=1.6e-05 Score=73.45 Aligned_cols=134 Identities=15% Similarity=0.151 Sum_probs=89.2
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHH----HHHhcCcc----cccccccccCC-------CCCCcccee
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLA----VVYDRGLI----GTYHDWCEAFS-------TYPRTYDLL 247 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~----~a~eRGli----g~~~d~~e~~~-------~yp~sFDlV 247 (332)
+||.+|||+|.-+++++..=-. +.-.|.|. ++.+. .+.+.|+. ...-|.++.-- .++++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 7999999999988888875221 24567777 43332 23344542 22233333211 133799999
Q ss_pred EehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh---------------------------hHHHHHHHHHhcCcc
Q 020011 248 HLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS---------------------------YFIDAVATIAKGMKW 300 (332)
Q Consensus 248 h~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~---------------------------~~~~~i~~i~~~l~W 300 (332)
.|.+++|-.+. ...+.++.+..|+|+|||.|++=.|= .-++.|..++.+-..
T Consensus 107 ~~~N~lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99999976653 44678999999999999999995531 136778888887666
Q ss_pred eeeecccccccccceEEEEEe
Q 020011 301 SCHKEDTEYGVEKEKLLLCQK 321 (332)
Q Consensus 301 ~~~~~~~e~~~~~e~~li~~K 321 (332)
..... + +=|...++||++|
T Consensus 186 ~l~~~-~-~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEED-I-DMPANNLLLVFRK 204 (204)
T ss_pred ccCcc-c-ccCCCCeEEEEeC
Confidence 64332 1 2234578999987
No 135
>PHA03411 putative methyltransferase; Provisional
Probab=98.17 E-value=4.5e-06 Score=80.29 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=66.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC--CccceeEehhhhccccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP--RTYDLLHLDGLFTAESH 258 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp--~sFDlVh~s~vf~h~~~ 258 (332)
..+|||+|||+|.++..++.+.. ..+|+++|. +.+++.+.++- .. ..-.+..+..+. ++||+|.++--|.|.+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-PE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-cC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 35799999999999988876521 126788888 88999887652 11 111122233333 78999999888877532
Q ss_pred c--CC---------------HHHHHHHHHhhhcCCcEEEEE
Q 020011 259 R--CD---------------MKFVLLEMDRILRPNGYVIVR 282 (332)
Q Consensus 259 ~--c~---------------~~~iL~EmdRVLRPGG~lii~ 282 (332)
. .+ +..++....++|+|+|.+++.
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 1 11 356788899999999988664
No 136
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.17 E-value=3.3e-06 Score=78.92 Aligned_cols=98 Identities=7% Similarity=-0.016 Sum_probs=72.6
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc-Ccc--------------cccccccccCCCCC----
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR-GLI--------------GTYHDWCEAFSTYP---- 241 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR-Gli--------------g~~~d~~e~~~~yp---- 241 (332)
..+||+.|||.|--+.+|+++|. +|+++|. +.+++.++++ ++. +.+.-+|..|..++
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46899999999999999999997 6788888 7777766552 211 01111223332232
Q ss_pred --CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 242 --RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 242 --~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+.||+|.=...|.++++ .....+..-|.++|+|||.+++..
T Consensus 121 ~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 57999999999999974 456789999999999999988743
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.13 E-value=1.9e-05 Score=73.68 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccc---cc-ccccccCC----CCC-Cccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIG---TY-HDWCEAFS----TYP-RTYD 245 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig---~~-~d~~e~~~----~yp-~sFD 245 (332)
..++|||+|||+|.-+..|+.. +.- -.|+.+|. ++.++.|.+. |+-. .+ .|..+.+. ..+ .+||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3679999999999755444432 111 13566666 6666666544 4311 11 11111111 123 6899
Q ss_pred eeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 246 LLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 246 lVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+|++..- ......++.++.|.|||||.+++.+
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9998732 2345678999999999999998744
No 138
>PRK03612 spermidine synthase; Provisional
Probab=98.12 E-value=1.2e-05 Score=83.23 Aligned_cols=121 Identities=13% Similarity=0.069 Sum_probs=73.3
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC-cc------------cccccccccCC-CCCCccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG-LI------------GTYHDWCEAFS-TYPRTYD 245 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG-li------------g~~~d~~e~~~-~yp~sFD 245 (332)
+.++|||+|||.|.++..+.+++. +..++.+|. +++++.+++.- +. -.++.-+..+. ..+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 468899999999999999888752 125666777 78888887731 10 01110011122 2348999
Q ss_pred eeEehhhhccccccC--CHHHHHHHHHhhhcCCcEEEEEcC-----hhHHHHHHHHHhcCccee
Q 020011 246 LLHLDGLFTAESHRC--DMKFVLLEMDRILRPNGYVIVRES-----SYFIDAVATIAKGMKWSC 302 (332)
Q Consensus 246 lVh~s~vf~h~~~~c--~~~~iL~EmdRVLRPGG~lii~d~-----~~~~~~i~~i~~~l~W~~ 302 (332)
+|.++......+... --++++.++.|.|||||.+++... .+....+.+..++....+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 999983222111000 013588999999999999999653 233344444444443333
No 139
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.12 E-value=6.3e-06 Score=75.22 Aligned_cols=113 Identities=13% Similarity=0.249 Sum_probs=76.1
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHH----HHHhcCccc--c--cccccccCCCC-CCccceeEehhh
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLA----VVYDRGLIG--T--YHDWCEAFSTY-PRTYDLLHLDGL 252 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~----~a~eRGlig--~--~~d~~e~~~~y-p~sFDlVh~s~v 252 (332)
.+|||+|||.|.+...|++.+... .++++|. +.++. +|..+|+.. . ..|.-.+ .| +..||+||=-.-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecCc
Confidence 389999999999999999988643 4788888 66654 344446542 1 1221111 34 388999987555
Q ss_pred hccc---ccc--CCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcC
Q 020011 253 FTAE---SHR--CDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGM 298 (332)
Q Consensus 253 f~h~---~~~--c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l 298 (332)
|.-+ ++. ..+.-++--+.++|+|||+|+|...+-..+++.+.....
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence 4322 111 112347888999999999999999887777776665544
No 140
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.10 E-value=1.1e-05 Score=71.36 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=69.7
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccc-----cCCCC---C-Ccccee
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCE-----AFSTY---P-RTYDLL 247 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e-----~~~~y---p-~sFDlV 247 (332)
+..+...+|||+||++|||+.++.+++.....|.++|....-.. ++......|..+ .+... . ..||+|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---cceeeeecccchhhHHHhhhhhccccccCccee
Confidence 44556789999999999999999998722234555555111000 121111111111 11111 1 689999
Q ss_pred Eehhhhccccc--------cCCHHHHHHHHHhhhcCCcEEEEEc-----ChhHHHHHHHHHhcCcceeeeccccccc-cc
Q 020011 248 HLDGLFTAESH--------RCDMKFVLLEMDRILRPNGYVIVRE-----SSYFIDAVATIAKGMKWSCHKEDTEYGV-EK 313 (332)
Q Consensus 248 h~s~vf~h~~~--------~c~~~~iL~EmdRVLRPGG~lii~d-----~~~~~~~i~~i~~~l~W~~~~~~~e~~~-~~ 313 (332)
.|...+.--.+ .......|.=+...|||||.+|+.- ..+++..++...+.+++-.-. -..+ ..
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~---~sr~~s~ 172 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPP---SSRSESS 172 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-T---TSBTTCB
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECc---CCCCCcc
Confidence 99974331110 0011234444557799999888743 224555555554444332111 1222 57
Q ss_pred ceEEEEEe
Q 020011 314 EKLLLCQK 321 (332)
Q Consensus 314 e~~li~~K 321 (332)
|..+||+.
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 88888864
No 141
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.09 E-value=4.5e-06 Score=83.10 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=73.9
Q ss_pred cccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cc----
Q 020011 156 FKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GL---- 226 (332)
Q Consensus 156 F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gl---- 226 (332)
|......| .+..+|..+...+.++. .++|+|||+|+...++..-.. -++.+++. +..+..+.+. ++
T Consensus 88 ~~~~~~~~-~~~~~~~~l~~~~~~~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~ 162 (364)
T KOG1269|consen 88 GNSNEMFW-IRHEGIVALRESCFPGS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKC 162 (364)
T ss_pred hhHHHHHH-HhhcchHHHhhcCcccc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 33444443 33334443322233332 789999999999888766432 13455555 3333322221 11
Q ss_pred -ccccccccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 227 -IGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 227 -ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+ ..++. ...+|+ ++||.+-+..+..|.+ +...++.|+.|+|+|||+++.-+
T Consensus 163 ~~-~~~~~--~~~~fedn~fd~v~~ld~~~~~~---~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 163 NF-VVADF--GKMPFEDNTFDGVRFLEVVCHAP---DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ce-ehhhh--hcCCCCccccCcEEEEeecccCC---cHHHHHHHHhcccCCCceEEeHH
Confidence 1 11111 134788 9999999999999987 46899999999999999999866
No 142
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.06 E-value=1.9e-05 Score=76.26 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=84.6
Q ss_pred ccccccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcch----HHHHHHhcCC-C--eEEEEeecCc-hhhHHHHH
Q 020011 151 GSASAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYG----GFAAAVIDDP-L--WVMNVVSSYA-ANTLAVVY 222 (332)
Q Consensus 151 ~~~~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G----gfaa~L~~~~-v--~vmnv~p~d~-~~~l~~a~ 222 (332)
.+...|-.|..+|....... .+. ...-+|+..||.+| ++|..|.+.. . .-+.|.+.|. ++.|+.|.
T Consensus 91 ineT~FFRd~~~f~~L~~~~---~~~---~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 91 TNLTAFFREAHHFPILAEHA---RRR---SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred CCCCCccCCcHHHHHHHHHH---Hhc---CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 35666777888887655432 111 12358999999999 5666666631 1 1246889999 88887776
Q ss_pred hcCc---------c----------------c--------------ccccccccCCCCC--CccceeEehhhhccccccCC
Q 020011 223 DRGL---------I----------------G--------------TYHDWCEAFSTYP--RTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 223 eRGl---------i----------------g--------------~~~d~~e~~~~yp--~sFDlVh~s~vf~h~~~~c~ 261 (332)
+ |. + | ..|++.+ .+|| +.||+|.|.+||.|+.+ ..
T Consensus 165 ~-G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~-~~ 240 (287)
T PRK10611 165 S-GIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDK-TT 240 (287)
T ss_pred h-CCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCH-HH
Confidence 3 31 0 0 0111111 1354 89999999999999863 46
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 262 MKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
...++..+.+.|+|||+|++-...
T Consensus 241 ~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 241 QERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCcc
Confidence 778999999999999998876643
No 143
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.02 E-value=2.6e-05 Score=73.00 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=67.0
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcc----c--c--cccccccCCCCC-CccceeEeh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLI----G--T--YHDWCEAFSTYP-RTYDLLHLD 250 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGli----g--~--~~d~~e~~~~yp-~sFDlVh~s 250 (332)
...+|||+|||+|+|+..|+++|+. .|.++|. ++++........- + . +.+|.+ +. .. ..||++++|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~DvsfiS 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFIS 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEee
Confidence 4578999999999999999998752 4678888 6677653322110 1 1 112211 11 13 477777777
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh----------------------hHHHHHHHHHhcCcceee
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS----------------------YFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----------------------~~~~~i~~i~~~l~W~~~ 303 (332)
. ..+|..|.+.|+| |.+++--.+ ..++++...+..+-|.+.
T Consensus 151 ~-----------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 151 L-----------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred h-----------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2 2468888889999 777654433 245556665666667654
No 144
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.02 E-value=3e-06 Score=78.23 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=57.4
Q ss_pred HHhhcCCCCCCCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Ccc--cccccccccCCCCC
Q 020011 170 YKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLI--GTYHDWCEAFSTYP 241 (332)
Q Consensus 170 y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Gli--g~~~d~~e~~~~yp 241 (332)
..+.+. +++ ..+|||+|||+|-++|.|+.. +-. -.|+.++. +...+.|.++ |+. ...+ +.....+|
T Consensus 64 ~l~~L~-l~p--g~~VLeIGtGsGY~aAlla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~--gdg~~g~~ 137 (209)
T PF01135_consen 64 MLEALD-LKP--GDRVLEIGTGSGYQAALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVV--GDGSEGWP 137 (209)
T ss_dssp HHHHTT-C-T--T-EEEEES-TTSHHHHHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE--S-GGGTTG
T ss_pred HHHHHh-cCC--CCEEEEecCCCcHHHHHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEE--cchhhccc
Confidence 334442 554 568999999999999888763 111 12445555 5555555544 331 1221 12233455
Q ss_pred --CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 242 --RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 242 --~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
..||.||++.....++ .++-+-|||||.+++--.
T Consensus 138 ~~apfD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH---------HHHHHhcCCCcEEEEEEc
Confidence 7899999997664332 345567999999998543
No 145
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.98 E-value=3.5e-05 Score=78.04 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--c-cccccccC--CCCC-CccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--T-YHDWCEAF--STYP-RTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~-~~d~~e~~--~~yp-~sFDlVh~s 250 (332)
..+|||+|||+|.++..|++... .|+++|. +++++.|.+. |+-. . ..|+.+.+ .+++ ++||+|.++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 46899999999999999998764 5678888 8888877654 3311 1 11221112 1255 789999887
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhH-HHHHHHH
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYF-IDAVATI 294 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~-~~~i~~i 294 (332)
+++.....++..+.+ |+|++.++++=++.. ...+..+
T Consensus 375 ------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L 412 (443)
T PRK13168 375 ------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVL 412 (443)
T ss_pred ------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHH
Confidence 445556667766655 699999999966654 3334444
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.92 E-value=5.4e-05 Score=76.11 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=60.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc-cccccc-ccCC---CC--C-CccceeE
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG-TYHDWC-EAFS---TY--P-RTYDLLH 248 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig-~~~d~~-e~~~---~y--p-~sFDlVh 248 (332)
.++|||+|||+|+|+.+.+..+. -.|+.+|. +.+++.+.+. |+-. .++-.+ +.+. .+ . ++||+|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 47899999999999876555553 24677777 7777766543 3321 111111 1111 12 2 5899999
Q ss_pred ehhh-hcc----cc-ccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 249 LDGL-FTA----ES-HRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 249 ~s~v-f~h----~~-~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
++-= |.. +. .......++.-..++|+|||.|++...
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9811 100 00 001344566778899999999998654
No 147
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.90 E-value=2.7e-05 Score=68.34 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=59.3
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc----ccccccccccCC--CCC-CccceeEehhh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL----IGTYHDWCEAFS--TYP-RTYDLLHLDGL 252 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl----ig~~~d~~e~~~--~yp-~sFDlVh~s~v 252 (332)
...+|||+|||+|.++..|++++. .++++|. +.+++.+.++-- +-.++ ..+. +++ ..||.|.++--
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECCC
Confidence 356899999999999999999854 5677777 778877766521 11121 2222 345 56999988743
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+ |.. ...+..++.+. .+.++|+|++...
T Consensus 87 y-~~~-~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 87 Y-NIS-TPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred c-ccH-HHHHHHHHhcC--CCcceEEEEEEHH
Confidence 3 322 12233444332 2568999988764
No 148
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.87 E-value=3.1e-05 Score=72.52 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=70.5
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-----hhhHHHHHhcCc-c-ccc-ccccccCCCCC--CccceeEehhh
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-----ANTLAVVYDRGL-I-GTY-HDWCEAFSTYP--RTYDLLHLDGL 252 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-----~~~l~~a~eRGl-i-g~~-~d~~e~~~~yp--~sFDlVh~s~v 252 (332)
..+|++|||.|.|...+++++--+ |+.+++. ...+..+.+.|+ . ..+ +|--+-+..++ +|.|-|+...=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 469999999999999999975422 5555555 445566667777 2 222 22111233344 59998887621
Q ss_pred hc-----cccccCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHH-HHHHH
Q 020011 253 FT-----AESHRCDMKFVLLEMDRILRPNGYVIVRESSY-FIDA-VATIA 295 (332)
Q Consensus 253 f~-----h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~-i~~i~ 295 (332)
=- |-+.|=--..+|.++.|+|+|||.|.+....+ +.+. +....
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~ 178 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL 178 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence 11 32222222469999999999999999866553 4444 44443
No 149
>PHA03412 putative methyltransferase; Provisional
Probab=97.86 E-value=5.1e-05 Score=71.68 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=60.1
Q ss_pred CCeEEEecCcchHHHHHHhcCC--CeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCC--CCccceeEehhhhccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDP--LWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTY--PRTYDLLHLDGLFTAE 256 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~--v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~y--p~sFDlVh~s~vf~h~ 256 (332)
..+|||+|||+|.|+.+++.+- ....+|..+|. +.++..|...- .. .+-....+..+ +.+||+|.++==|.-.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-PE-ATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-cC-CEEEEcchhcccccCCccEEEECCCCCCc
Confidence 3589999999999999887631 01236788888 88888887542 11 11112233333 3789999997322211
Q ss_pred c--c------cCC-HHHHHHHHHhhhcCCcEEEE
Q 020011 257 S--H------RCD-MKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 257 ~--~------~c~-~~~iL~EmdRVLRPGG~lii 281 (332)
. + ... ...++....|+|+||+. |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 0 112 23488888898888886 44
No 150
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.85 E-value=0.00026 Score=64.57 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHH---HHHhc-Cccc--cccccc-ccCCCCCCccceeE
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLA---VVYDR-GLIG--TYHDWC-EAFSTYPRTYDLLH 248 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~---~a~eR-Glig--~~~d~~-e~~~~yp~sFDlVh 248 (332)
|.......++|+|||+|+.+..++..+- ...|..+|. ++.+. ...+| |+.+ .....+ +.+...| +||.|+
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiF 107 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIF 107 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEE
Confidence 4444466899999999999877763221 123455555 44443 33333 4322 111111 1233344 899999
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC-hhHHHHHHHHHhcCcc-eee
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES-SYFIDAVATIAKGMKW-SCH 303 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~-~~~~~~i~~i~~~l~W-~~~ 303 (332)
...- -.++.+|......|||||.+++.-- .+....+-+..+.+.+ ++.
T Consensus 108 IGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 108 IGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred ECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 9853 3577899999999999999999774 3555555555666666 443
No 151
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.85 E-value=7.2e-05 Score=75.26 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=70.2
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--cc-ccccccCCC--CC-CccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TY-HDWCEAFST--YP-RTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~-~d~~e~~~~--yp-~sFDlVh~s 250 (332)
..+|||+|||+|.|+..|++... .|+++|. +++++.|.+. |+.. .+ .|..+.+.. +. ++||+|..+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 46899999999999999988654 4677777 7787776653 3311 11 121111112 33 679999976
Q ss_pred hhhccccccCC-HHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceee
Q 020011 251 GLFTAESHRCD-MKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 251 ~vf~h~~~~c~-~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~ 303 (332)
+++.. ...++.++.+ |+|+|.++++-++..+.+--+.+..-.|++.
T Consensus 370 ------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 ------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred ------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 33333 3566776665 8999999998776654433333333345443
No 152
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.84 E-value=5.1e-05 Score=78.46 Aligned_cols=112 Identities=11% Similarity=0.048 Sum_probs=70.7
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-h----hhHHHHHhcCccccccccccc----CCCCC-CccceeEeh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-A----NTLAVVYDRGLIGTYHDWCEA----FSTYP-RTYDLLHLD 250 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~----~~l~~a~eRGlig~~~d~~e~----~~~yp-~sFDlVh~s 250 (332)
.-..+||+|||.|.|...++...-. .|+.+++. . ..+..+.++|+.... -.|.. ..-|| +++|-||..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEEE
Confidence 3567999999999999999987432 25666666 3 334555555653221 11221 23478 999999887
Q ss_pred hhhc-----cccccCCHHHHHHHHHhhhcCCcEEEEEcC-hhHHHHHHHH
Q 020011 251 GLFT-----AESHRCDMKFVLLEMDRILRPNGYVIVRES-SYFIDAVATI 294 (332)
Q Consensus 251 ~vf~-----h~~~~c~~~~iL~EmdRVLRPGG~lii~d~-~~~~~~i~~i 294 (332)
.==- |.+.|=--..+|.++.|+|||||.+.+... .++.+.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~ 474 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIEL 474 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 3221 333222224699999999999998887654 4445554444
No 153
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.83 E-value=0.0002 Score=65.02 Aligned_cols=137 Identities=19% Similarity=0.257 Sum_probs=80.1
Q ss_pred ccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcch--HHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc-Cccc--cc
Q 020011 157 KHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYG--GFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR-GLIG--TY 230 (332)
Q Consensus 157 ~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--gfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR-Glig--~~ 230 (332)
....+.|.+.+.+-...++.+..... +|+|+|+|-| |+--++......++=|.+... -+.++.+... ||.+ .+
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 34557787777655555555544333 7999999999 555555554443322334333 4455444433 6643 34
Q ss_pred ccccccCCCCCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHH---HhcCccee
Q 020011 231 HDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATI---AKGMKWSC 302 (332)
Q Consensus 231 ~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i---~~~l~W~~ 302 (332)
|.-.|. ..++.+||+|.|-.| ..+..++.-+.+.|+|||.+++-......+++++. .+.+.++.
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred Eeeecc-cccCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 443444 235599999998754 34678888899999999999998766554555444 44444443
No 154
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.81 E-value=1.6e-05 Score=74.94 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc---CcccccccccccCCCCC-CccceeEehhhhccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR---GLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR---Glig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~ 256 (332)
...++|+|||.|..+.+|...+|- .+.-.|. -+|++-+.+- ++...+..--|.+++|. ++||||.+|..+|-.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 456999999999999999999862 3444555 6677666543 44444433336688898 999999999888654
Q ss_pred cccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. +++.-|..+.-+|||.|.||-+-
T Consensus 151 N---dLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 151 N---DLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred c---cCchHHHHHHHhcCCCccchhHH
Confidence 3 45678999999999999998754
No 155
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.80 E-value=5.6e-05 Score=73.21 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=65.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc---CCC-CCCccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA---FST-YPRTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~---~~~-yp~sFDlVh~s~v 252 (332)
..+|||+|||+|.|+..|++++. .|+++|. +++++.|.+. |+. .++-.+.. +.. ..+.||+|.++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 46899999999999999999764 5788888 7788776544 431 11111111 111 22679999988
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcChhH
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYF 287 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~ 287 (332)
|++..+...+.++-.-++|++.++++-.+..
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCccc
Confidence 5555555555555566889999999887765
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.78 E-value=6.2e-05 Score=67.01 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=60.8
Q ss_pred cchhhHHHHHH--HHHhhcC----CCCCCCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCchhhH---HHHHhc-C-
Q 020011 158 HDDSKWNVRVK--HYKKLLP----ALGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYAANTL---AVVYDR-G- 225 (332)
Q Consensus 158 ~d~~~W~~~v~--~y~~~l~----~l~~~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~~~~l---~~a~eR-G- 225 (332)
-+...|...+. .|..... .......++||++|||+|-.+.+++.. +.. .|+-.|.++.+ +...++ +
T Consensus 16 ~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~--~Vv~TD~~~~l~~l~~Ni~~N~~ 93 (173)
T PF10294_consen 16 TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAA--RVVLTDYNEVLELLRRNIELNGS 93 (173)
T ss_dssp -------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-S--EEEEEE-S-HHHHHHHHHHTT--
T ss_pred CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCc--eEEEeccchhhHHHHHHHHhccc
Confidence 35678866433 4543210 112234679999999999555444444 221 23333332232 222222 1
Q ss_pred -----cccccccccccC--CCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 226 -----LIGTYHDWCEAF--STYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 226 -----lig~~~d~~e~~--~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+.....+|.+.. .... +.||+|.+++++..- ...+.++.=+.++|+|+|.+++..+
T Consensus 94 ~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 94 LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp ------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cccccccCcEEEecCcccccccccccCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 123456887643 1133 789999999999752 4578899999999999999887654
No 157
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.77 E-value=4.1e-05 Score=75.12 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC-----------cccc-cccccc-----cCCCCC-
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG-----------LIGT-YHDWCE-----AFSTYP- 241 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG-----------lig~-~~d~~e-----~~~~yp- 241 (332)
.++-|||+|||-||=+.-.-+.++ -.++++|. +-.++.|..|- +... +..-|. ...+++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 466799999999996544444443 13456666 54566555552 0111 100011 123456
Q ss_pred CccceeEehhhhccc-cccCCHHHHHHHHHhhhcCCcEEEEEcChh--HHHHHHHH
Q 020011 242 RTYDLLHLDGLFTAE-SHRCDMKFVLLEMDRILRPNGYVIVRESSY--FIDAVATI 294 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~-~~~c~~~~iL~EmdRVLRPGG~lii~d~~~--~~~~i~~i 294 (332)
..||+|-|-.+|||- .......-+|.-+.+.|||||+||-+-|.. ++.+++..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 559999999999873 222333458999999999999999988764 45565554
No 158
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.77 E-value=7.2e-05 Score=76.40 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=70.1
Q ss_pred CCccCCCCCcccc-ccccccccccccchhhHHHHHH---HHHh-hcCCCCC-CCCCeEEEecCcchHHHHHHhcCCC---
Q 020011 134 WPERLHVAPERIS-DIHGGSASAFKHDDSKWNVRVK---HYKK-LLPALGT-DKIRNVMDMNTLYGGFAAAVIDDPL--- 204 (332)
Q Consensus 134 WP~rl~~~p~rl~-~~~g~~~~~F~~d~~~W~~~v~---~y~~-~l~~l~~-~~~r~VLD~GCG~Ggfaa~L~~~~v--- 204 (332)
....|..|..-|. .+...+.+.|+.|...+..--. .... ....-.. .+...|||+|||+|-++.+.++.+.
T Consensus 133 ~~d~Lq~PLqPl~dnL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~ 212 (448)
T PF05185_consen 133 YEDYLQAPLQPLMDNLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG 212 (448)
T ss_dssp ----EE----TTTS---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC
T ss_pred chhhccCCCCCchhhhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC
Confidence 3344555544444 2445678999999876654322 2221 1211110 1246799999999988754433320
Q ss_pred eEEEEeecCc-hhhHH----HHHhcCcccccccccccCCCC--CCccceeEehhhhccccccCCHHHHHHHHHhhhcCCc
Q 020011 205 WVMNVVSSYA-ANTLA----VVYDRGLIGTYHDWCEAFSTY--PRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNG 277 (332)
Q Consensus 205 ~vmnv~p~d~-~~~l~----~a~eRGlig~~~d~~e~~~~y--p~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG 277 (332)
-...|..++. +++.. .+...|.-+.++-.......+ |...|+|++- .|-.+-+.+.+...|.-.+|.|||||
T Consensus 213 ~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~G 291 (448)
T PF05185_consen 213 GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDG 291 (448)
T ss_dssp CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEE
T ss_pred CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCC
Confidence 0113344444 33322 224445422222222222233 4799998875 44444444677889999999999999
Q ss_pred EEE
Q 020011 278 YVI 280 (332)
Q Consensus 278 ~li 280 (332)
.+|
T Consensus 292 i~I 294 (448)
T PF05185_consen 292 IMI 294 (448)
T ss_dssp EEE
T ss_pred EEe
Confidence 876
No 159
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.75 E-value=0.00014 Score=69.73 Aligned_cols=132 Identities=14% Similarity=0.227 Sum_probs=87.0
Q ss_pred cccccccchhhHHHHHHHHHh-hcCCCCCCCCCeEEEecCcch----HHHHHHhcCCC----eEEEEeecCc-hhhHHHH
Q 020011 152 SASAFKHDDSKWNVRVKHYKK-LLPALGTDKIRNVMDMNTLYG----GFAAAVIDDPL----WVMNVVSSYA-ANTLAVV 221 (332)
Q Consensus 152 ~~~~F~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G----gfaa~L~~~~v----~vmnv~p~d~-~~~l~~a 221 (332)
+...|--+.++|..-..+=.. ++. -..++.-+|.-+||++| ++|..|.+... +.+.|.+.|. ...|+.|
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~-~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A 145 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVK-RKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKA 145 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh-hccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHH
Confidence 445566677777655443222 221 11224678999999999 57777766542 3568888888 7777666
Q ss_pred Hh---------cCcc-------------c--------------ccccccccCCCCCCccceeEehhhhccccccCCHHHH
Q 020011 222 YD---------RGLI-------------G--------------TYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKFV 265 (332)
Q Consensus 222 ~e---------RGli-------------g--------------~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~i 265 (332)
.. +|++ | ..|++-+. .++++-||+|.|-+||-|+. +.....+
T Consensus 146 ~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~-~~~~~~fD~IfCRNVLIYFd-~~~q~~i 223 (268)
T COG1352 146 RAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDD-SPFLGKFDLIFCRNVLIYFD-EETQERI 223 (268)
T ss_pred hcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCC-ccccCCCCEEEEcceEEeeC-HHHHHHH
Confidence 42 2221 1 01222111 11558899999999999986 3456789
Q ss_pred HHHHHhhhcCCcEEEEEcChh
Q 020011 266 LLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 266 L~EmdRVLRPGG~lii~d~~~ 286 (332)
+..+...|+|||+|++-....
T Consensus 224 l~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 224 LRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred HHHHHHHhCCCCEEEEccCcc
Confidence 999999999999999977544
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.74 E-value=4e-05 Score=71.10 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHh-cCc------cccc--------ccccccCCCCC----
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYD-RGL------IGTY--------HDWCEAFSTYP---- 241 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~e-RGl------ig~~--------~d~~e~~~~yp---- 241 (332)
..+||+-|||.|--+.+|+++|. +|+++|. +.+++.+++ +++ .+.+ .-+|..|-.++
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 45899999999999999999986 7899999 888887754 443 1111 11223332222
Q ss_pred CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcE--EEEEc--------Ch--hHHHHHHHHHhcCcceeeec
Q 020011 242 RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGY--VIVRE--------SS--YFIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~--lii~d--------~~--~~~~~i~~i~~~l~W~~~~~ 305 (332)
+.||+|.=...|.-++ +.....+..-|.++|||||. ++... |+ -..++|+++.. -.|++...
T Consensus 115 g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp HSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEE
T ss_pred CCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEE
Confidence 5699999888888776 46778999999999999999 33332 11 12466777766 67776544
No 161
>PRK04148 hypothetical protein; Provisional
Probab=97.69 E-value=9.3e-05 Score=64.16 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred CCCeEEEecCcchH-HHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC--CccceeEehhhhccc
Q 020011 181 KIRNVMDMNTLYGG-FAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP--RTYDLLHLDGLFTAE 256 (332)
Q Consensus 181 ~~r~VLD~GCG~Gg-faa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp--~sFDlVh~s~vf~h~ 256 (332)
+..+|||+|||+|. +|..|.+.|. +|+.+|. ++.++.+.++++.....|+.+. ++. ..+|+|.+..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p--~~~~y~~a~liysir----- 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNP--NLEIYKNAKLIYSIR----- 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCC--CHHHHhcCCEEEEeC-----
Confidence 35789999999995 9999999887 6788888 8899999999886666655432 233 7899998872
Q ss_pred cccCCHHHHHHHHHhh
Q 020011 257 SHRCDMKFVLLEMDRI 272 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRV 272 (332)
+ ..++...+.++.+-
T Consensus 86 p-p~el~~~~~~la~~ 100 (134)
T PRK04148 86 P-PRDLQPFILELAKK 100 (134)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 1 23344455555543
No 162
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00011 Score=69.55 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=83.3
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCC-eEEEEeecCchhhHHHHH----hcCc-----ccccccccccCCCCC-Cccc
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPL-WVMNVVSSYAANTLAVVY----DRGL-----IGTYHDWCEAFSTYP-RTYD 245 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v-~vmnv~p~d~~~~l~~a~----eRGl-----ig~~~d~~e~~~~yp-~sFD 245 (332)
.+.....+|||..-|.|-+|..-+++|. .|++|.-. ++.|+.|. .|+| --...|-.+....|+ .|||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkd--p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKD--PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeC--CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 3344567899999999999999999987 55444211 33443332 1222 112233334456799 8899
Q ss_pred eeEeh-hhhccccccCCHHHHHHHHHhhhcCCcEEEEEc-Ch-------hHHHHHHHHHhcCcceeeecccccccccceE
Q 020011 246 LLHLD-GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE-SS-------YFIDAVATIAKGMKWSCHKEDTEYGVEKEKL 316 (332)
Q Consensus 246 lVh~s-~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d-~~-------~~~~~i~~i~~~l~W~~~~~~~e~~~~~e~~ 316 (332)
+|.-. -=|++... -=-+.+-.|+.|||||||.++=-. ++ +....+.+.+++.-..+..... |..
T Consensus 208 aIiHDPPRfS~Age-LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~------~~~ 280 (287)
T COG2521 208 AIIHDPPRFSLAGE-LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR------EAL 280 (287)
T ss_pred eEeeCCCccchhhh-HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh------hcc
Confidence 87643 23333210 001468899999999999988533 22 4566777777777777555432 333
Q ss_pred -EEEEec
Q 020011 317 -LLCQKK 322 (332)
Q Consensus 317 -li~~K~ 322 (332)
++++|+
T Consensus 281 gv~A~k~ 287 (287)
T COG2521 281 GVVAVKP 287 (287)
T ss_pred ceEEecC
Confidence 566663
No 163
>PLN02476 O-methyltransferase
Probab=97.65 E-value=0.00063 Score=65.61 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=76.4
Q ss_pred CCCeEEEecCcchHHHHHHhcC---CCeEEEEeecCc-hhhHHHHH----hcCccc---cc-ccccccCCCC-----CCc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD---PLWVMNVVSSYA-ANTLAVVY----DRGLIG---TY-HDWCEAFSTY-----PRT 243 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~---~v~vmnv~p~d~-~~~l~~a~----eRGlig---~~-~d~~e~~~~y-----p~s 243 (332)
..++||++|+|+|..+.+|+.. +.. |+.+|. ++..++|. .-|+-. .. .+-.+.+..+ +.+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3689999999999988888762 222 344555 44444443 335421 11 1111111112 368
Q ss_pred cceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh-----------h-----HHHHHHHHHhcCcceeeeccc
Q 020011 244 YDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS-----------Y-----FIDAVATIAKGMKWSCHKEDT 307 (332)
Q Consensus 244 FDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~-----------~-----~~~~i~~i~~~l~W~~~~~~~ 307 (332)
||+|+... +..+...++....+.|||||.+++.+.. + +-+..+.+...=+++..+.-
T Consensus 195 FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP- 267 (278)
T PLN02476 195 YDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP- 267 (278)
T ss_pred CCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE-
Confidence 99999983 2345678999999999999999986521 0 12222334445566666552
Q ss_pred ccccccceEEEEEec
Q 020011 308 EYGVEKEKLLLCQKK 322 (332)
Q Consensus 308 e~~~~~e~~li~~K~ 322 (332)
-.+++++++|.
T Consensus 268 ----igDGl~i~~K~ 278 (278)
T PLN02476 268 ----IGDGMTICRKR 278 (278)
T ss_pred ----eCCeeEEEEEC
Confidence 24678888874
No 164
>PLN02672 methionine S-methyltransferase
Probab=97.65 E-value=0.00026 Score=79.07 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=74.0
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC----c------------------cc-ccccccccCC
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG----L------------------IG-TYHDWCEAFS 238 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG----l------------------ig-~~~d~~e~~~ 238 (332)
.+|||+|||+|.++.+|+++.-. -.|+++|. +++++.|.+.. + +- ...|+. .
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~---~ 195 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL---G 195 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh---h
Confidence 57999999999999999875321 15678888 88887774431 1 01 112222 2
Q ss_pred CCC---CccceeEeh--hh------------hcccc--------ccCCH-------------HHHHHHHHhhhcCCcEEE
Q 020011 239 TYP---RTYDLLHLD--GL------------FTAES--------HRCDM-------------KFVLLEMDRILRPNGYVI 280 (332)
Q Consensus 239 ~yp---~sFDlVh~s--~v------------f~h~~--------~~c~~-------------~~iL~EmdRVLRPGG~li 280 (332)
.++ ..||+|.++ .+ ..|.+ +.|.+ ..++.+..++|||||+++
T Consensus 196 ~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 196 YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 233 269999985 11 11111 11222 458999999999999999
Q ss_pred EEcChhHHHHHH-HHHhcCcce
Q 020011 281 VRESSYFIDAVA-TIAKGMKWS 301 (332)
Q Consensus 281 i~d~~~~~~~i~-~i~~~l~W~ 301 (332)
+--....-+.+. ++.++.-|.
T Consensus 276 lEiG~~q~~~v~~~l~~~~gf~ 297 (1082)
T PLN02672 276 FNMGGRPGQAVCERLFERRGFR 297 (1082)
T ss_pred EEECccHHHHHHHHHHHHCCCC
Confidence 988777767777 576654443
No 165
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.62 E-value=5.4e-05 Score=72.93 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=75.0
Q ss_pred cccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccccccc
Q 020011 154 SAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHD 232 (332)
Q Consensus 154 ~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d 232 (332)
..|..+...=+-++..+....+ . ...+||+|||.|-. +...+. .-+.+.|. .-.+..+...|-....
T Consensus 23 ~~fs~tr~~~Wp~v~qfl~~~~---~--gsv~~d~gCGngky---~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~-- 90 (293)
T KOG1331|consen 23 THFSATRAAPWPMVRQFLDSQP---T--GSVGLDVGCGNGKY---LGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVC-- 90 (293)
T ss_pred hhccccccCccHHHHHHHhccC---C--cceeeecccCCccc---CcCCCc--ceeeecchhhhhccccccCCCceee--
Confidence 3365554433445555544333 2 34699999999853 333332 12355665 3344444433331111
Q ss_pred cccc-CCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 233 WCEA-FSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 233 ~~e~-~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.|.+ -.||+ .+||.+....|+||+..++....++.|+-|+|||||...+-.
T Consensus 91 ~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 91 RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 1222 35788 999999999999999988888999999999999999965543
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.62 E-value=0.00055 Score=63.04 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCCeEEEecCcchHHHHHHhcC---CCeEEEEeecCchhhHHHH----HhcCcccc---c-ccccccCC----CCC-Ccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD---PLWVMNVVSSYAANTLAVV----YDRGLIGT---Y-HDWCEAFS----TYP-RTY 244 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~---~v~vmnv~p~d~~~~l~~a----~eRGlig~---~-~d~~e~~~----~yp-~sF 244 (332)
+.++||.+|+++|--+.+|++. +..++.+... +...++| ..-|+-.. . .+..+.+. ..+ ++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 3689999999999888777753 3333333322 3344444 33354211 1 11111111 132 689
Q ss_pred ceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh----------------hHHHHHHHHHhcCcceeeecccc
Q 020011 245 DLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS----------------YFIDAVATIAKGMKWSCHKEDTE 308 (332)
Q Consensus 245 DlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----------------~~~~~i~~i~~~l~W~~~~~~~e 308 (332)
|+|+...- +.+...++..+-+.|||||.+++.+.. .+-+..+.+...=+.+..+..
T Consensus 123 D~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp-- 194 (205)
T PF01596_consen 123 DFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP-- 194 (205)
T ss_dssp EEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC--
T ss_pred eEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE--
Confidence 99999842 345667888899999999999998733 112223333444455555542
Q ss_pred cccccceEEEEEec
Q 020011 309 YGVEKEKLLLCQKK 322 (332)
Q Consensus 309 ~~~~~e~~li~~K~ 322 (332)
-.++++|++|+
T Consensus 195 ---igdGl~l~~K~ 205 (205)
T PF01596_consen 195 ---IGDGLTLARKR 205 (205)
T ss_dssp ---STTEEEEEEE-
T ss_pred ---eCCeeEEEEEC
Confidence 24679999884
No 167
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00054 Score=65.20 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccc----ccccccccCCCCCCccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIG----TYHDWCEAFSTYPRTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig----~~~d~~e~~~~yp~sFDlVh~s~ 251 (332)
..+|||.|.|.|.++++|+.. +-+. .|..++. ++..+.|.+. |+.- ...|.++. .++..||.|+..
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~--~~~~~vDav~LD- 170 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG--IDEEDVDAVFLD- 170 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCc-eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc--ccccccCEEEEc-
Confidence 678999999999999999852 2222 4566666 7777777654 3322 11233332 244799999887
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh-hHHHHHHHHHhcCcc
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS-YFIDAVATIAKGMKW 300 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~-~~~~~i~~i~~~l~W 300 (332)
+ .++-.++.-++.+|+|||.+++-.|. +.+++.-.-++..+|
T Consensus 171 ----m---p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 171 ----L---PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ----C---CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 2 35678999999999999999987765 334444333443344
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.60 E-value=0.00021 Score=71.07 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccc--cccc-cccccCCC-CCCccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLI--GTYH-DWCEAFST-YPRTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gli--g~~~-d~~e~~~~-yp~sFDlVh~s~v 252 (332)
..+|||++||+|.|+..|+.++. .|+++|. +.+++.|.+. |+. -.+. |. +.+.. ....||+|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~D-- 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVN-- 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEEC--
Confidence 36899999999999999998764 5678887 7787776654 221 1111 11 11111 12469999998
Q ss_pred hccccccCCHH-HHHHHHHhhhcCCcEEEEEcChhHH-HHHHHHHhcCcceee
Q 020011 253 FTAESHRCDMK-FVLLEMDRILRPNGYVIVRESSYFI-DAVATIAKGMKWSCH 303 (332)
Q Consensus 253 f~h~~~~c~~~-~iL~EmdRVLRPGG~lii~d~~~~~-~~i~~i~~~l~W~~~ 303 (332)
|++.... .++..+ .-++|++.++++-++..+ ..++.+ --|++.
T Consensus 308 ----PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 308 ----PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ----CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 5555443 444444 358999999999887653 334444 236554
No 169
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00049 Score=66.40 Aligned_cols=157 Identities=15% Similarity=0.210 Sum_probs=91.4
Q ss_pred cchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc-------Cccc
Q 020011 158 HDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR-------GLIG 228 (332)
Q Consensus 158 ~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR-------Glig 228 (332)
-+|+.|...|-.-.+....+. -..|||+|||.|..+-.|+.. +. + .|+.+|. +.++..|.+. |-++
T Consensus 128 pETEE~V~~Vid~~~~~~~~~---~~~ildlgtGSGaIslsll~~L~~-~-~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSK---HTHILDLGTGSGAISLSLLHGLPQ-C-TVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcc---cceEEEecCCccHHHHHHHhcCCC-c-eEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 489999998865433222232 237999999999998887764 31 1 3556666 6666666654 2344
Q ss_pred ccccccc--cCCCCC---CccceeEeh--hhhc------------cccc-------cC--CHHHHHHHHHhhhcCCcEEE
Q 020011 229 TYHDWCE--AFSTYP---RTYDLLHLD--GLFT------------AESH-------RC--DMKFVLLEMDRILRPNGYVI 280 (332)
Q Consensus 229 ~~~d~~e--~~~~yp---~sFDlVh~s--~vf~------------h~~~-------~c--~~~~iL~EmdRVLRPGG~li 280 (332)
..|...+ .+.++| +.+|++.|+ .+++ |.+. .+ .+..++.=.-|.|+|||++.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 4544223 366775 999999997 2222 1100 00 00126777889999999999
Q ss_pred EEcC-----hhHHHHHHHH-HhcCcceeeecccccccccceEEEEEe
Q 020011 281 VRES-----SYFIDAVATI-AKGMKWSCHKEDTEYGVEKEKLLLCQK 321 (332)
Q Consensus 281 i~d~-----~~~~~~i~~i-~~~l~W~~~~~~~e~~~~~e~~li~~K 321 (332)
+.-. ...+..+... ...--|.+.++. |..+++++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~--Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVVS--DFAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhheee--cccCCcceEEEEe
Confidence 9664 2333333332 333334444431 2235677777654
No 170
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.53 E-value=0.0003 Score=64.48 Aligned_cols=118 Identities=8% Similarity=0.031 Sum_probs=65.1
Q ss_pred cccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccc--c
Q 020011 156 FKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLI--G 228 (332)
Q Consensus 156 F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gli--g 228 (332)
+...+..-+..+.++... .. ...+|||+|||+|.++..++.++. ..|+.+|. +++++.+.+. |+- -
T Consensus 33 ~Rp~~d~v~e~l~~~l~~---~~--~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~ 105 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAP---VI--VDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNAR 105 (199)
T ss_pred cCcCCHHHHHHHHHHHhh---hc--CCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEE
Confidence 445555555555443211 11 135899999999999976544443 24666666 6666655432 221 1
Q ss_pred cc-ccccccCCCCC-CccceeEehhhhccccccCCH-HHHHHHHHh--hhcCCcEEEEEcChh
Q 020011 229 TY-HDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDM-KFVLLEMDR--ILRPNGYVIVRESSY 286 (332)
Q Consensus 229 ~~-~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~-~~iL~EmdR--VLRPGG~lii~d~~~ 286 (332)
.+ .|..+ +.+.. ..||+|.++==+ +..+ +.++.-+.. +|+|+|++++.....
T Consensus 106 ~~~~D~~~-~l~~~~~~fDlV~~DPPy-----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 106 VVNTNALS-FLAQPGTPHNVVFVDPPF-----RKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EEEchHHH-HHhhcCCCceEEEECCCC-----CCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 11 12111 12223 579999998211 2232 334444433 479999999987653
No 171
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00055 Score=63.51 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc--ccccccccCCCCC--CccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYHDWCEAFSTYP--RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~d~~e~~~~yp--~sFDlVh~s~v 252 (332)
..+||++|||+|-.+|-|++..-. |..++. +...+.|..+ |+-. +.| .+...-|| ..||.|+....
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~~~---V~siEr~~~L~~~A~~~L~~lg~~nV~v~~--gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLVGR---VVSIERIEELAEQARRNLETLGYENVTVRH--GDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHhCe---EEEEEEcHHHHHHHHHHHHHcCCCceEEEE--CCcccCCCCCCCcCEEEEeec
Confidence 578999999999999999886443 444444 4444444433 4422 222 22334466 88999999988
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
...+|. .| -+-|||||.+++-..
T Consensus 148 a~~vP~------~L---l~QL~~gGrlv~PvG 170 (209)
T COG2518 148 APEVPE------AL---LDQLKPGGRLVIPVG 170 (209)
T ss_pred cCCCCH------HH---HHhcccCCEEEEEEc
Confidence 776652 33 346999999998665
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00067 Score=63.34 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccc---cc--ccccccCCCC-CCccceeE
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIG---TY--HDWCEAFSTY-PRTYDLLH 248 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig---~~--~d~~e~~~~y-p~sFDlVh 248 (332)
..++||.+|.+.|--+..|+.. +--. .++.+|. ++..+.|++- |+-. .+ .|.-+.++-. ..+||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4789999999999766665542 1001 3555666 6666666543 4311 11 2443444433 49999999
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh--------------hHHHHHHHHHhcCcceeeecccccccccc
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS--------------YFIDAVATIAKGMKWSCHKEDTEYGVEKE 314 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~--------------~~~~~i~~i~~~l~W~~~~~~~e~~~~~e 314 (332)
... ++.+...++.+.-+.|||||.+++.+-. ....+++.....+.++.... +.--|..+
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~lP~gD 210 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD-TVLLPLGD 210 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce-eEEEecCC
Confidence 983 2345568999999999999999986621 22333444444444432221 10012236
Q ss_pred eEEEEEec
Q 020011 315 KLLLCQKK 322 (332)
Q Consensus 315 ~~li~~K~ 322 (332)
+++++.|.
T Consensus 211 Gl~v~~k~ 218 (219)
T COG4122 211 GLLLSRKR 218 (219)
T ss_pred ceEEEeec
Confidence 78998885
No 173
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.44 E-value=0.00032 Score=69.31 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCC-eEEEEeecCc-hhhHHHHHhcCccc---ccccccccCCCCC-CccceeEehhhhcc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPL-WVMNVVSSYA-ANTLAVVYDRGLIG---TYHDWCEAFSTYP-RTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v-~vmnv~p~d~-~~~l~~a~eRGlig---~~~d~~e~~~~yp-~sFDlVh~s~vf~h 255 (332)
.+.|||+|||+|-++.+-++.|. .|+.|...+. .-..+++.+.|+-. .++.--|.. ..| ...|+|.+...=+-
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhhhHH
Confidence 67899999999999888888775 3444444444 44556677777522 111111222 356 99999998422110
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEE
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii 281 (332)
+--.--+..+|..=||=|+|||.++=
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEcc
Confidence 00011235688888999999998763
No 174
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.35 E-value=0.001 Score=64.63 Aligned_cols=127 Identities=17% Similarity=0.280 Sum_probs=84.8
Q ss_pred CCCCCeEEEecCcchHHH-HHHhcCCCeEEEEeecCc-----hhhHHHHHhcCcccccc-cccccCCC--CC---Cccce
Q 020011 179 TDKIRNVMDMNTLYGGFA-AAVIDDPLWVMNVVSSYA-----ANTLAVVYDRGLIGTYH-DWCEAFST--YP---RTYDL 246 (332)
Q Consensus 179 ~~~~r~VLD~GCG~Ggfa-a~L~~~~v~vmnv~p~d~-----~~~l~~a~eRGlig~~~-d~~e~~~~--yp---~sFDl 246 (332)
.+..-+||||.||.|... -+|.+.+.-..+|.-.|. +..-+.|.+|||-.... .-..+|.. |. -..+|
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 355678999999999643 344444321223333333 44567899999955421 11123332 33 45699
Q ss_pred eEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh--hHHHHHHHHHhc----Ccceeeec
Q 020011 247 LHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS--YFIDAVATIAKG----MKWSCHKE 305 (332)
Q Consensus 247 Vh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~--~~~~~i~~i~~~----l~W~~~~~ 305 (332)
+..|.+++.+++...+...|.-+.++|.|||++|.+..+ ..++.|...+.+ --|-++..
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 999999999997665677899999999999999999954 445666666655 35877654
No 175
>PRK00536 speE spermidine synthase; Provisional
Probab=97.29 E-value=0.0012 Score=63.14 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=66.0
Q ss_pred CCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccc---ccccc-c---ccCCC-CCCccc
Q 020011 175 PALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIG---TYHDW-C---EAFST-YPRTYD 245 (332)
Q Consensus 175 ~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig---~~~d~-~---e~~~~-yp~sFD 245 (332)
|.+...+.++||=+|.|-|+.++.+.+.+- .|+-+|. +..++++++- ++. .+.|= . ..+.. ..++||
T Consensus 66 pl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~-lP~~~~~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 66 GGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred HHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHH-CHHHHHhhcCCCEEEeehhhhccCCcCC
Confidence 334556689999999999999999999874 4444555 5677776652 111 00000 0 00111 237899
Q ss_pred eeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 246 LLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 246 lVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+|.+...+. ..+...+.|.|+|||.++.....
T Consensus 142 VIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 142 LIICLQEPD--------IHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred EEEEcCCCC--------hHHHHHHHHhcCCCcEEEECCCC
Confidence 999985432 35778899999999999997644
No 176
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.00011 Score=65.45 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=41.4
Q ss_pred CCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 237 FSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 237 ~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.++|. +|-|+|.|.+|++|+.- .+-..++.|..|+|||||++-+..|.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 45787 99999999999999864 34567999999999999999998764
No 177
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.21 E-value=0.00085 Score=63.81 Aligned_cols=103 Identities=10% Similarity=0.142 Sum_probs=66.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc---------c-ccccc------------------
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL---------I-GTYHD------------------ 232 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl---------i-g~~~d------------------ 232 (332)
..-+||+||..|.+++++++.-. .--|.++|. +..++.|...-- . +..+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 34599999999999999988621 113577777 667777755410 0 00000
Q ss_pred --------cc---------ccCCCCC-CccceeEehhhhc--cccc-cCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 233 --------WC---------EAFSTYP-RTYDLLHLDGLFT--AESH-RCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 233 --------~~---------e~~~~yp-~sFDlVh~s~vf~--h~~~-~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
|. ..|+.+- +.||+|.|-.+=. |+.. +..+..++.-+.|.|.|||+||+--.+
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP 211 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence 00 0122234 6799999964432 4321 356778999999999999999997654
No 178
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.19 E-value=0.0026 Score=60.85 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=73.0
Q ss_pred CCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHh--cCccccccc-cccc----CCCCCCccceeEehh
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYD--RGLIGTYHD-WCEA----FSTYPRTYDLLHLDG 251 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~e--RGlig~~~d-~~e~----~~~yp~sFDlVh~s~ 251 (332)
..++|||+|||.|+-+-+..+. + -.-.++.+|. +.+++++.. +......+. |-.. +.++ ...|||.+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEEEeh
Confidence 3578999999999766555442 2 1234566777 666665432 112211111 1111 1222 3449999999
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh-----hHHHHHHHHHhcCcceeee
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS-----YFIDAVATIAKGMKWSCHK 304 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~-----~~~~~i~~i~~~l~W~~~~ 304 (332)
+|..+++ .....++..+.+.+.+ ++||.++- ..+.++++.+....+.+..
T Consensus 111 ~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 111 VLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 9999987 6677788888777766 88888864 3466666666544444433
No 179
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.17 E-value=0.00068 Score=63.90 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=46.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc-ccccccccccCCCCC-CccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL-IGTYHDWCEAFSTYP-RTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl-ig~~~d~~e~~~~yp-~sFDlVh~s~ 251 (332)
..+|||+|||+|.++..|++++. .|+++|. +++++.+.++-- .+.+.-.+..+..++ ..||+|.++-
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcC
Confidence 57899999999999999999865 5677777 778877766521 111211223344455 5689998873
No 180
>PLN02823 spermine synthase
Probab=97.16 E-value=0.0043 Score=61.35 Aligned_cols=100 Identities=15% Similarity=0.082 Sum_probs=61.6
Q ss_pred CCCeEEEecCcchHHHHHHhcCC-CeEEEEeecCc-hhhHHHHHhcC-ccc---------ccccccccCCCCC-Ccccee
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDP-LWVMNVVSSYA-ANTLAVVYDRG-LIG---------TYHDWCEAFSTYP-RTYDLL 247 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~-v~vmnv~p~d~-~~~l~~a~eRG-lig---------~~~d~~e~~~~yp-~sFDlV 247 (332)
..++||-+|+|.|+.+..+.+.. + ..|+-++. +..++++.+.- +.+ .+..-+-.+..-. ++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 46899999999999999888753 4 34555666 67788776542 110 0100011122223 789999
Q ss_pred Eehhhhcccc-ccCC---HHHHHH-HHHhhhcCCcEEEEEc
Q 020011 248 HLDGLFTAES-HRCD---MKFVLL-EMDRILRPNGYVIVRE 283 (332)
Q Consensus 248 h~s~vf~h~~-~~c~---~~~iL~-EmdRVLRPGG~lii~d 283 (332)
.+.. +.... ..+. -..++. .+.|.|+|||.+++..
T Consensus 181 i~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9873 22110 0010 124676 8999999999999764
No 181
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.15 E-value=0.0014 Score=64.90 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=76.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccCC
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~ 261 (332)
+...+|+|.|.|..+..|..+--+ +..+.+|.+.-++.+..-+ .|+-|--|..|-.-| +=|+|+.-.+|+|+.| .+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD-ed 253 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD-ED 253 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCCh-HH
Confidence 677999999999999998875333 3566666666666665544 665555555555555 2349999999999996 57
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcC
Q 020011 262 MKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
...+|.-..--|+|||.+|+-+.
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEec
Confidence 89999999999999999999886
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.13 E-value=0.0006 Score=64.82 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
..+|||+|||+|.++.+|++++. .|+++|. +++++.+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 46899999999999999999865 5677888 8888888765
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.09 E-value=0.0019 Score=60.57 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
...+|||+|||+|.++..|++++. .++.+|. +++++.+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 357899999999999999999875 3566666 6777766654
No 184
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.011 Score=55.12 Aligned_cols=152 Identities=17% Similarity=0.190 Sum_probs=89.9
Q ss_pred cccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcch--HHHHHHhcCCCeEEEEeecCc----hhhHHHHHhc-Cc
Q 020011 154 SAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYG--GFAAAVIDDPLWVMNVVSSYA----ANTLAVVYDR-GL 226 (332)
Q Consensus 154 ~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--gfaa~L~~~~v~vmnv~p~d~----~~~l~~a~eR-Gl 226 (332)
.......+.|.+.+.+-....+.+... ..+++|+|+|-| |.--++...+.. |+-+|. -+.|+.+... ||
T Consensus 41 t~~~~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L 116 (215)
T COG0357 41 TAIRDPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGL 116 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCC
Confidence 344556788988886655544433321 478999999999 444345444442 333444 4455544443 66
Q ss_pred c--cccccccccCCCCC--Cc-cceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEE---cChhHHHHHHHHHhcC
Q 020011 227 I--GTYHDWCEAFSTYP--RT-YDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVR---ESSYFIDAVATIAKGM 298 (332)
Q Consensus 227 i--g~~~d~~e~~~~yp--~s-FDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~---d~~~~~~~i~~i~~~l 298 (332)
. ..+|. +...|. .. ||+|.|-.| +.+..++.=....||+||.+++- .-.+.+.+++.-....
T Consensus 117 ~nv~i~~~---RaE~~~~~~~~~D~vtsRAv-------a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~ 186 (215)
T COG0357 117 ENVEIVHG---RAEEFGQEKKQYDVVTSRAV-------ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPL 186 (215)
T ss_pred CCeEEehh---hHhhcccccccCcEEEeehc-------cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhh
Confidence 4 24443 334444 23 999988743 34556666678899999987543 3445566777767777
Q ss_pred cceeeeccccccc--ccceEEEE
Q 020011 299 KWSCHKEDTEYGV--EKEKLLLC 319 (332)
Q Consensus 299 ~W~~~~~~~e~~~--~~e~~li~ 319 (332)
.+.+.....-..+ +.++.|+.
T Consensus 187 ~~~~~~~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 187 GGQVEKVFSLTVPELDGERHLVI 209 (215)
T ss_pred cCcEEEEEEeecCCCCCceEEEE
Confidence 7777665444334 23444443
No 185
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.97 E-value=0.0016 Score=60.70 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=75.4
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCccccccccccc-CCCCC-CccceeEehhhhccccccC
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEA-FSTYP-RTYDLLHLDGLFTAESHRC 260 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~-~~~yp-~sFDlVh~s~vf~h~~~~c 260 (332)
-++|||||=....+ +...+ | .+|+++|...+-+-+.+ .|..+. ++.-+ +.||+|.||.||.++|+..
T Consensus 53 lrlLEVGals~~N~--~s~~~-~-fdvt~IDLns~~~~I~q-------qDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTSG-W-FDVTRIDLNSQHPGILQ-------QDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCc--ccccC-c-eeeEEeecCCCCCCcee-------eccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 57999998643322 12222 2 36788887222222221 333232 22234 7899999999999999766
Q ss_pred CHHHHHHHHHhhhcCCcE-----EEEEcChh--------HHHHHHHHHhcCcceeeec
Q 020011 261 DMKFVLLEMDRILRPNGY-----VIVRESSY--------FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 261 ~~~~iL~EmdRVLRPGG~-----lii~d~~~--------~~~~i~~i~~~l~W~~~~~ 305 (332)
..-..+.-+.+.|||+|. |+|.-|.. ..+.+..+..+|-.....+
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 667899999999999999 77766542 2467888888888877655
No 186
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.92 E-value=0.0036 Score=64.55 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=60.2
Q ss_pred CCCCeEEEecCcchHHHHHHhcCC-CeEEEEeecCc-hhhHHHH---Hhc-Ccccc--c-ccccccC-CCCCCccceeE-
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDDP-LWVMNVVSSYA-ANTLAVV---YDR-GLIGT--Y-HDWCEAF-STYPRTYDLLH- 248 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~~-v~vmnv~p~d~-~~~l~~a---~eR-Glig~--~-~d~~e~~-~~yp~sFDlVh- 248 (332)
....+||||+||.||=+.+|++.- -.. .|+..|. +..+... .+| |+..+ . .|- ..+ ..++.+||.|.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g-~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQG-AIVANEYSASRVKVLHANISRCGVSNVALTHFDG-RVFGAALPETFDAILL 189 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-hhhhhhchhhcCeEEE
Confidence 345789999999999777766531 001 2455555 4444333 334 54221 1 111 112 23568899999
Q ss_pred ---eh--hhhcccccc------CCH-------HHHHHHHHhhhcCCcEEEEEcCh
Q 020011 249 ---LD--GLFTAESHR------CDM-------KFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 249 ---~s--~vf~h~~~~------c~~-------~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
|| .+|.+-++. .++ ..+|....+.|||||+++.+...
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 65 233321100 001 24899999999999999998843
No 187
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.73 E-value=0.0023 Score=64.56 Aligned_cols=102 Identities=25% Similarity=0.320 Sum_probs=68.9
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccccccccccc--cCC--C-CCC---ccceeE
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCE--AFS--T-YPR---TYDLLH 248 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e--~~~--~-yp~---sFDlVh 248 (332)
.++|||+=|-||+|+.+-+..|. -.|+.+|. ...|+.|.+. |+.+.-|.|-. .|. . +.+ +||||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 57899999999999999888886 13566777 6677777665 44444444422 222 2 223 999999
Q ss_pred eh-hhhccccc-----cCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 249 LD-GLFTAESH-----RCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 249 ~s-~vf~h~~~-----~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.. =.|..-+. .-+...++....++|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 85 12211110 012346999999999999999998865
No 188
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.69 E-value=0.0036 Score=59.42 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccc----ccccccc-cCCC-CCCccceeEe
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIG----TYHDWCE-AFST-YPRTYDLLHL 249 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig----~~~d~~e-~~~~-yp~sFDlVh~ 249 (332)
..+||+.|.|.|+++.+|+.. +-.+ .|..++. ++..+.|.+. |+.. ...|.|+ .|.. ..+.||.|+-
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE
Confidence 678999999999999998752 1101 2444555 5555555443 5522 3466664 3421 2378998877
Q ss_pred hhhhccccccCCHHHHHHHHHhhh-cCCcEEEEEcCh-hHHHHHHHHHhcCcce
Q 020011 250 DGLFTAESHRCDMKFVLLEMDRIL-RPNGYVIVRESS-YFIDAVATIAKGMKWS 301 (332)
Q Consensus 250 s~vf~h~~~~c~~~~iL~EmdRVL-RPGG~lii~d~~-~~~~~i~~i~~~l~W~ 301 (332)
. ++ ++-.++.-+.++| ||||.+++-.|. +.+.+.-.-++...|.
T Consensus 120 D-----lp---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 120 D-----LP---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp E-----SS---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred e-----CC---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 6 33 3446888899999 999999987765 3333333333444453
No 189
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.62 E-value=0.0033 Score=60.91 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=44.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----CcccccccccccCCCCC-CccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEAFSTYP-RTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~~~~yp-~sFDlVh~s 250 (332)
..+|||+|||+|.++..|++.+. .|+.+|. +++++.+.++ ++.+.+.-.+..+..++ ..||+|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEec
Confidence 46899999999999999998765 4566777 7777776654 22221111123344455 679998876
No 190
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.016 Score=54.85 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=78.8
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccc--cCCC--CCCccceeEehhhhcc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCE--AFST--YPRTYDLLHLDGLFTA 255 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e--~~~~--yp~sFDlVh~s~vf~h 255 (332)
..+.+||+|+-||||+-.|.++|+. -|.++|. .+++.--+....--....-+. .+.+ +....|++.|.-.|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI- 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI- 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh-
Confidence 4688999999999999999999873 3566666 556554443322111110001 1111 224678999986664
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEcCh----------------------hHHHHHHHHHhcCcceeee
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRESS----------------------YFIDAVATIAKGMKWSCHK 304 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----------------------~~~~~i~~i~~~l~W~~~~ 304 (332)
.+..+|-.+..+|.|+|.++..-.+ .++.++.+.+....|.+.-
T Consensus 156 -----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 -----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred -----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 3457999999999999998875533 4688888889999998753
No 191
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.013 Score=56.79 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=75.0
Q ss_pred CCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccc----------c---CCCC
Q 020011 175 PALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCE----------A---FSTY 240 (332)
Q Consensus 175 ~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e----------~---~~~y 240 (332)
+.+..++.++||=+|-|.|++++.+.+.+- +-.++-++. ++.++.+++.- +..+..+. + ...+
T Consensus 70 ~~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l--~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 70 PLLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYL--PEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hhhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhc--cCcccccCCCceEEEeccHHHHHHhC
Confidence 444555668999999999999999999863 224455555 67777776542 11110000 0 1135
Q ss_pred CCccceeEehhhhccccccCCH--HHHHHHHHhhhcCCcEEEEEcChh-----HHHHHHHHHhcCcce
Q 020011 241 PRTYDLLHLDGLFTAESHRCDM--KFVLLEMDRILRPNGYVIVRESSY-----FIDAVATIAKGMKWS 301 (332)
Q Consensus 241 p~sFDlVh~s~vf~h~~~~c~~--~~iL~EmdRVLRPGG~lii~d~~~-----~~~~i~~i~~~l~W~ 301 (332)
+++||+|.+...= .......+ ..+.....|.|+|+|.++...... .+..+....+++...
T Consensus 147 ~~~fDvIi~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 147 EEKFDVIIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred CCcCCEEEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 5799999987321 11100011 469999999999999999984332 223444445555333
No 192
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.023 Score=56.54 Aligned_cols=110 Identities=15% Similarity=0.048 Sum_probs=70.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccccc-ccccccc-CCCCC-CccceeEehhh-
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGT-YHDWCEA-FSTYP-RTYDLLHLDGL- 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~-~~d~~e~-~~~yp-~sFDlVh~s~v- 252 (332)
..+|||==||||||+... +....++.+.|. ..|+.-|... |+-.. ++.-|.+ ..+++ ++||.|.|.-=
T Consensus 198 G~~vlDPFcGTGgiLiEa---gl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 198 GELVLDPFCGTGGILIEA---GLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred CCEeecCcCCccHHHHhh---hhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 457999999999997554 333447788998 7777655432 22121 1222332 45688 77999999621
Q ss_pred --hcccc-c--cCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHH
Q 020011 253 --FTAES-H--RCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATI 294 (332)
Q Consensus 253 --f~h~~-~--~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i 294 (332)
-+... . ......+|.++.++|++||++++-.+.....+.+++
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~~ 321 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEEL 321 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhhc
Confidence 11111 0 012457999999999999999998886555554443
No 193
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.41 E-value=0.011 Score=56.12 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=55.3
Q ss_pred CCCeEEEecCcchHHHHHHhcC---CCeEEEEeecCc-hhhHHHH----HhcCccccc----ccccccCCC------CCC
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD---PLWVMNVVSSYA-ANTLAVV----YDRGLIGTY----HDWCEAFST------YPR 242 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~---~v~vmnv~p~d~-~~~l~~a----~eRGlig~~----~d~~e~~~~------yp~ 242 (332)
..++||.+|+++|--+.+|+.. +..+ +.++. ++..++| ..-|+...+ .+-.+.+.. +.+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v---~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKI---LAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEE---EEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 3679999999999766666542 2223 33444 4444443 333542111 111111111 246
Q ss_pred ccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 243 TYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 243 sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+||+|+...- +.....++...-+.|||||.+++.+
T Consensus 156 ~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 156 TFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 9999999832 3345677888889999999988754
No 194
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.39 E-value=0.041 Score=53.02 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=78.0
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhh---HHHHHhcCc-------ccccccccc--------------
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANT---LAVVYDRGL-------IGTYHDWCE-------------- 235 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~---l~~a~eRGl-------ig~~~d~~e-------------- 235 (332)
..-+||==|||.|.++-.++.+|.. +.+.+. --| -.+++.... -..+|.+|.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~---~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYA---VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccce---EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3457999999999999999999873 344444 222 244444310 011121111
Q ss_pred -------------------cCC-CCC-C----ccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh-----
Q 020011 236 -------------------AFS-TYP-R----TYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS----- 285 (332)
Q Consensus 236 -------------------~~~-~yp-~----sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----- 285 (332)
.|. -|+ . +||.|.+...+.- -.++.++|..|.++|||||++|=..|.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLKPGGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence 111 144 4 8998888754432 246889999999999999977654432
Q ss_pred ----------h-HHHHHHHHHhcCcceeeec
Q 020011 286 ----------Y-FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 286 ----------~-~~~~i~~i~~~l~W~~~~~ 305 (332)
+ .+++|+.+++++-|+....
T Consensus 210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 210 PMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 1 2789999999999998754
No 195
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.32 E-value=0.013 Score=53.07 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=72.9
Q ss_pred CCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc--C---cccccccccccCCCCC-CccceeE
Q 020011 176 ALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR--G---LIGTYHDWCEAFSTYP-RTYDLLH 248 (332)
Q Consensus 176 ~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR--G---lig~~~d~~e~~~~yp-~sFDlVh 248 (332)
.+.+.....||.+|.|+|-|+.++.++++---++..++. ++....-.++ | +.|..-+.-..+..++ ..||.|+
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 355566778999999999999999999875556666666 5555444333 1 1233322222234577 8999999
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|.-=|-.++- ..-..+|.+..-.|++||-++-..
T Consensus 123 S~lPll~~P~-~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 123 SGLPLLNFPM-HRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eccccccCcH-HHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9855544442 123579999999999999998754
No 196
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.30 E-value=0.0083 Score=55.24 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=56.9
Q ss_pred cccccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhc--CCCeEEEEeecCc-hhhHHHHH----hc
Q 020011 152 SASAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVID--DPLWVMNVVSSYA-ANTLAVVY----DR 224 (332)
Q Consensus 152 ~~~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~--~~v~vmnv~p~d~-~~~l~~a~----eR 224 (332)
+..+|......-+.|+.. .+.. ..+||||-||.|.|+-.+++ ++.. |...|. |++++... ..
T Consensus 80 ~kvyfs~rl~~Er~Ri~~------~v~~--~e~VlD~faGIG~f~l~~ak~~~~~~---V~A~d~Np~a~~~L~~Ni~lN 148 (200)
T PF02475_consen 80 SKVYFSPRLSTERRRIAN------LVKP--GEVVLDMFAGIGPFSLPIAKHGKAKR---VYAVDLNPDAVEYLKENIRLN 148 (200)
T ss_dssp TTS---GGGHHHHHHHHT------C--T--T-EEEETT-TTTTTHHHHHHHT-SSE---EEEEES-HHHHHHHHHHHHHT
T ss_pred ceEEEccccHHHHHHHHh------cCCc--ceEEEEccCCccHHHHHHhhhcCccE---EEEecCCHHHHHHHHHHHHHc
Confidence 344455544444444432 2333 57899999999999988887 5543 344555 44444332 22
Q ss_pred Cccc---ccccccccCCCCCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEE
Q 020011 225 GLIG---TYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVI 280 (332)
Q Consensus 225 Glig---~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~li 280 (332)
++-+ .++.-|..+.+ ...||-|++. ++. ....+|.+..+++|+||++-
T Consensus 149 kv~~~i~~~~~D~~~~~~-~~~~drvim~-----lp~--~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 149 KVENRIEVINGDAREFLP-EGKFDRVIMN-----LPE--SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-TTTEEEEES-GGG----TT-EEEEEE-------TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred CCCCeEEEEcCCHHHhcC-ccccCEEEEC-----ChH--HHHHHHHHHHHHhcCCcEEE
Confidence 3332 22221222332 4899977776 222 22468899999999999874
No 197
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.29 E-value=0.015 Score=52.70 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=56.2
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc---C-CCC--C-CccceeEe
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA---F-STY--P-RTYDLLHL 249 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~---~-~~y--p-~sFDlVh~ 249 (332)
..+|||++||+|+++..++.++.- .|+.+|. +.+++.+.+. ++...+.-.+.. + ..+ . ..||+|..
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 367999999999999999998862 3556666 5555555432 222111111111 1 112 1 24788887
Q ss_pred hhhhccccccCCHHHHHHHH--HhhhcCCcEEEEEcCh
Q 020011 250 DGLFTAESHRCDMKFVLLEM--DRILRPNGYVIVRESS 285 (332)
Q Consensus 250 s~vf~h~~~~c~~~~iL~Em--dRVLRPGG~lii~d~~ 285 (332)
.==+.. .....++.-+ ..+|+++|.+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 632221 1233333333 4579999998887654
No 198
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.08 E-value=0.012 Score=54.97 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=54.6
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc--------hhhHHHHHhc---Cc---ccccccccccCCCCCCccceeEe
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA--------ANTLAVVYDR---GL---IGTYHDWCEAFSTYPRTYDLLHL 249 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~--------~~~l~~a~eR---Gl---ig~~~d~~e~~~~yp~sFDlVh~ 249 (332)
.+-|+|||||||...|+...--. -+.+.+. .+.++....+ |. +++.+.-|--+ .|+-|-.-..
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kgqL 139 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKGQL 139 (249)
T ss_pred eEEeeccCccchhhhccccCccc-eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhccc
Confidence 48999999999999998874211 1233333 2223322211 11 34444322222 2355544444
Q ss_pred hhhhccccccC--------CH--HHHHHHHHhhhcCCcEEEEEcCh
Q 020011 250 DGLFTAESHRC--------DM--KFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 250 s~vf~h~~~~c--------~~--~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+-.|.-++++- .+ ..++.|..=+||+||.++.....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 44443333210 00 14899999999999999977655
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.08 E-value=0.011 Score=59.47 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=58.4
Q ss_pred CeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc----Cccc--ccccccccCCCCCCccceeEehhhhc
Q 020011 183 RNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR----GLIG--TYHDWCEAFSTYPRTYDLLHLDGLFT 254 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR----Glig--~~~d~~e~~~~yp~sFDlVh~s~vf~ 254 (332)
.+|||++||+|.++..++.. ++ -.|+.+|. +++++.+.+. |+.. .++.-+..+..-.+.||+|..+- +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 47999999999999988653 42 24566777 7777666543 3321 12111111111146799999972 1
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. ....++...-+.++|||++.++-
T Consensus 135 ----G-s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ----G-SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ----C-CcHHHHHHHHHHhcCCCEEEEEe
Confidence 1 22457777677899999999984
No 200
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.023 Score=52.22 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=44.6
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC--cccccccccccCCCCCCccceeEehhhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG--LIGTYHDWCEAFSTYPRTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG--lig~~~d~~e~~~~yp~sFDlVh~s~vf 253 (332)
.+.|+|+|||+|.|+-..+-.|.. .|.++|. +++++++.+.- +.|.+--.+...+.|..-||.+..+==|
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 467999999999877666555542 2566666 77777665442 3333322233445567889988876444
No 201
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.00 E-value=0.013 Score=57.94 Aligned_cols=107 Identities=7% Similarity=0.116 Sum_probs=64.4
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccc------cccccccccCC---CCC--------
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLI------GTYHDWCEAFS---TYP-------- 241 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gli------g~~~d~~e~~~---~yp-------- 241 (332)
+|||++||+|.|+.+|++... .|+++|. +++++.+.+. |+- +...++..... .++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 499999999999999988643 5677777 7788777654 321 11111111000 010
Q ss_pred -CccceeEehhhhccccccCCHH-HHHHHHHhhhcCCcEEEEEcChhH-HHHHHHHHhcCcceeee
Q 020011 242 -RTYDLLHLDGLFTAESHRCDMK-FVLLEMDRILRPNGYVIVRESSYF-IDAVATIAKGMKWSCHK 304 (332)
Q Consensus 242 -~sFDlVh~s~vf~h~~~~c~~~-~iL~EmdRVLRPGG~lii~d~~~~-~~~i~~i~~~l~W~~~~ 304 (332)
..||+|... |+|..+. .++.- +++|++.++++=++.. ...++.+.++ +++..
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~ 331 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVER 331 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEE
Confidence 127988887 5555433 34443 4569999999987765 3444444443 66543
No 202
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.96 E-value=0.029 Score=55.22 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=65.2
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc-----Cccccc---c--cccccCCC--CC-
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR-----GLIGTY---H--DWCEAFST--YP- 241 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR-----Glig~~---~--d~~e~~~~--yp- 241 (332)
+..+...+|||+|||.|..+..|..+ ..| .++++|. +.+++.|.+. ++.+.+ + +....+.. .+
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccC
Confidence 33445678999999999888877654 223 4677777 6666655532 232211 1 00011221 24
Q ss_pred CccceeEehhhhcccccc--CCHHHHHHH----------------HHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceee
Q 020011 242 RTYDLLHLDGLFTAESHR--CDMKFVLLE----------------MDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~~~~--c~~~~iL~E----------------mdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~ 303 (332)
..||+|.|+==|+--... ..-..-... ...++-+||.+-+..+.. .+-..+++...|=+.
T Consensus 188 ~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi--~eS~~~~~~~gwfts 265 (321)
T PRK11727 188 ERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMI--EESKAFAKQVLWFTS 265 (321)
T ss_pred CceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhh--HHHHHHHhhCcEEEE
Confidence 689999998333211000 000001111 123345788876665543 333566677777555
Q ss_pred ec
Q 020011 304 KE 305 (332)
Q Consensus 304 ~~ 305 (332)
+.
T Consensus 266 mv 267 (321)
T PRK11727 266 LV 267 (321)
T ss_pred Ee
Confidence 43
No 203
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.90 E-value=0.025 Score=56.40 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccCCCC--CCccceeEehhhhcccccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTY--PRTYDLLHLDGLFTAESHR 259 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~~y--p~sFDlVh~s~vf~h~~~~ 259 (332)
..++||+||++|||+..|.++|. .|+.+|...+-+...+-+.+-.+. ...|-.. ++.+|++.|..+
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~--~d~fr~~p~~~~vDwvVcDmv------- 279 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLR--ADGFKFRPPRKNVDWLVCDMV------- 279 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEe--ccCcccCCCCCCCCEEEEecc-------
Confidence 56899999999999999999987 456666532333333333332221 1222223 388999999854
Q ss_pred CCHHHHHHHHHhhhcCC--cEEEEEc
Q 020011 260 CDMKFVLLEMDRILRPN--GYVIVRE 283 (332)
Q Consensus 260 c~~~~iL~EmdRVLRPG--G~lii~d 283 (332)
|.+..++.=|.+-|..| ..+|+.-
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 45567777777777665 4566544
No 204
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.73 E-value=0.0061 Score=54.79 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=38.6
Q ss_pred CCCCccceeEehhhhccc-----cccC---CHHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 239 TYPRTYDLLHLDGLFTAE-----SHRC---DMKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 239 ~yp~sFDlVh~s~vf~h~-----~~~c---~~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
.|.++||.+-|-++++|. .++- .-...+.++.|+|||||.|++..|..
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 478999999999999985 2222 22458999999999999999998763
No 205
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.014 Score=54.51 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=56.6
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCc--c-----cccccccc-------cCCCCC--Cc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGL--I-----GTYHDWCE-------AFSTYP--RT 243 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGl--i-----g~~~d~~e-------~~~~yp--~s 243 (332)
.-+.||+|.|+|-+.+.+.-. +....|..+++. ++.++.+...-. + -...+-|+ ..--|+ ..
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~ 162 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAP 162 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCC
Confidence 347999999999766544321 111224577877 776665543311 1 00001111 112254 88
Q ss_pred cceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 244 YDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 244 FDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
||.|||-.. ...+.+|+--.|+|||.+++---.
T Consensus 163 YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 163 YDAIHVGAA---------ASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred cceEEEccC---------ccccHHHHHHhhccCCeEEEeecc
Confidence 999999832 235778888899999999885543
No 206
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.68 E-value=0.026 Score=56.01 Aligned_cols=107 Identities=10% Similarity=0.213 Sum_probs=63.8
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccc--ccc----ccccccCC---CC--------
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLI--GTY----HDWCEAFS---TY-------- 240 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gli--g~~----~d~~e~~~---~y-------- 240 (332)
.+|||++||+|+|+.+|++... .|+++|. +.+++.+.+. |+- -.+ .++...+. .+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3599999999999999987643 4677777 7777776654 331 111 11111010 01
Q ss_pred -CCccceeEehhhhccccccCCH-HHHHHHHHhhhcCCcEEEEEcChhHH-HHHHHHHhcCcceee
Q 020011 241 -PRTYDLLHLDGLFTAESHRCDM-KFVLLEMDRILRPNGYVIVRESSYFI-DAVATIAKGMKWSCH 303 (332)
Q Consensus 241 -p~sFDlVh~s~vf~h~~~~c~~-~~iL~EmdRVLRPGG~lii~d~~~~~-~~i~~i~~~l~W~~~ 303 (332)
...||+|... |+|..+ +.++. .+++|++.++++-++..+ ..++.+.+ .+++.
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~---~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLK---LVQAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHH---HHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 1258999988 555433 23443 344589999998877653 33555543 45554
No 207
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.66 E-value=0.039 Score=57.11 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=31.7
Q ss_pred CCeEEEecCcchHHHHHHhcCC-------CeEEEEeecCc-hhhHHHHHhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDP-------LWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~-------v~vmnv~p~d~-~~~l~~a~eR 224 (332)
..+|||.+||+|+|..+++++. ....++.+.|. +..+..+..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 4589999999999998886531 12357888888 7777766544
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.57 E-value=0.022 Score=54.55 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=60.0
Q ss_pred CCCeEEEecCcchHHHHHHhcC------CCeEEEEeecCc-hhhHHHHHhc----Ccccc-ccc-ccccCCC--C--CCc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDD------PLWVMNVVSSYA-ANTLAVVYDR----GLIGT-YHD-WCEAFST--Y--PRT 243 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~------~v~vmnv~p~d~-~~~l~~a~eR----Glig~-~~d-~~e~~~~--y--p~s 243 (332)
...+|||-.||+|+|..++.+. .....++.+.|. +.++.++.-+ |+-.. .+- ....+.. + .+.
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3567999999999998777652 001236788888 7676665433 32111 011 1122322 2 158
Q ss_pred cceeEehhhhccc-------cc----------cCCHH-HHHHHHHhhhcCCcEEEEEcChhH
Q 020011 244 YDLLHLDGLFTAE-------SH----------RCDMK-FVLLEMDRILRPNGYVIVRESSYF 287 (332)
Q Consensus 244 FDlVh~s~vf~h~-------~~----------~c~~~-~iL~EmdRVLRPGG~lii~d~~~~ 287 (332)
||+|.++==|... .. .-..+ .++.-+-+.|++||.+++.-+...
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~ 187 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF 187 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence 9999997433321 00 01111 366779999999999888777654
No 209
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.36 E-value=0.059 Score=48.27 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCeEEEecCcchHHH--HHHhcCCCe------EEEEeecCc-hhhHHHHHhc----Cccccc--ccccccCCCCC-Cccc
Q 020011 182 IRNVMDMNTLYGGFA--AAVIDDPLW------VMNVVSSYA-ANTLAVVYDR----GLIGTY--HDWCEAFSTYP-RTYD 245 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfa--a~L~~~~v~------vmnv~p~d~-~~~l~~a~eR----Glig~~--~d~~e~~~~yp-~sFD 245 (332)
...|||-=||+|++. |++...++. ...+.+.|. +++++.+.+. |+.+.+ ..+=...++++ ++||
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 567999999999988 444444442 112567888 7777766554 332221 11101113344 8999
Q ss_pred eeEehhhhcc-ccc----cCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceee
Q 020011 246 LLHLDGLFTA-ESH----RCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 246 lVh~s~vf~h-~~~----~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~ 303 (332)
+|.|+-=+-. +.. ......++.|+.|+|+|...+++.....+ ++.+....|...
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~ 167 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKR 167 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceE
Confidence 9999732221 010 11123589999999999666666665554 333333355443
No 210
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.36 E-value=0.053 Score=51.04 Aligned_cols=95 Identities=19% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCeEEEecCcchHHHHHHhc----CCC-eEEEEeecCchhhHHHHHhcCc-ccccccccccCCC--CC---CccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVID----DPL-WVMNVVSSYAANTLAVVYDRGL-IGTYHDWCEAFST--YP---RTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~----~~v-~vmnv~p~d~~~~l~~a~eRGl-ig~~~d~~e~~~~--yp---~sFDlVh~s 250 (332)
..+||-+|+..|++..++.+ .|. ..+...|....+.+.+|..|-. +..+.| +..| |. ...|+|++.
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D---Ar~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED---ARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES----TTSGGGGTTTS--EEEEEEE
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc---CCChHHhhcccccccEEEec
Confidence 67899999999999988876 232 3333344444788999999964 444443 2222 32 678988887
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+..+.+..-++.=+..-||+||.+++.-.
T Consensus 151 -----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 151 -----VAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp ------SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 22233344566677789999999998653
No 211
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.29 E-value=0.041 Score=51.92 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=55.5
Q ss_pred CCeEEEecCcch--HHH--HHHhcCCC-eEEEEeecCchhhHHHHHhcCc---ccccc-ccccc----CCCCC-Ccccee
Q 020011 182 IRNVMDMNTLYG--GFA--AAVIDDPL-WVMNVVSSYAANTLAVVYDRGL---IGTYH-DWCEA----FSTYP-RTYDLL 247 (332)
Q Consensus 182 ~r~VLD~GCG~G--gfa--a~L~~~~v-~vmnv~p~d~~~~l~~a~eRGl---ig~~~-d~~e~----~~~yp-~sFDlV 247 (332)
-++.||+|.-+| .++ -+|-+.|. .++++.+...+-..++..-.|. +...+ .-+++ ..-++ +|||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 578999996666 444 34445453 2222222211323444444443 22111 11222 22356 999999
Q ss_pred EehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 248 HLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 248 h~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+.. |.+ .+......+.-|+||+||.+++..
T Consensus 154 FvD----adK--~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FVD----ADK--DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEc----cch--HHHHHHHHHHHhhcccccEEEEec
Confidence 987 333 345589999999999999999876
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.24 E-value=0.29 Score=46.19 Aligned_cols=161 Identities=11% Similarity=0.089 Sum_probs=87.3
Q ss_pred cccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCC-CeEEEEeecCc-hhhHHHHHhcC-c--c---
Q 020011 156 FKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDP-LWVMNVVSSYA-ANTLAVVYDRG-L--I--- 227 (332)
Q Consensus 156 F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~-v~vmnv~p~d~-~~~l~~a~eRG-l--i--- 227 (332)
...|...+.+.+.|-.-+. ..+.++||=+|-|.|+.+..|.+.+ +- .|+-++. +..++.+..-- . .
T Consensus 55 ~e~de~~y~e~l~h~~~~~----~~~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~ 128 (246)
T PF01564_consen 55 SERDEFIYHEMLVHPPLLL----HPNPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKYFPEFSEGLD 128 (246)
T ss_dssp ETTTHHHHHHHHHHHHHHH----SSST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHHTHHHHTTGG
T ss_pred EEechHHHHHHHhhhHhhc----CCCcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHhchhhccccC
Confidence 3344445555554443322 1257899999999999999999876 32 3444455 56666665421 0 0
Q ss_pred ----ccccccccc-CCCCCC-ccceeEehhhhccccc-cCCHHHHHHHHHhhhcCCcEEEEEcC-----hhHHHHHHHHH
Q 020011 228 ----GTYHDWCEA-FSTYPR-TYDLLHLDGLFTAESH-RCDMKFVLLEMDRILRPNGYVIVRES-----SYFIDAVATIA 295 (332)
Q Consensus 228 ----g~~~d~~e~-~~~yp~-sFDlVh~s~vf~h~~~-~c~~~~iL~EmdRVLRPGG~lii~d~-----~~~~~~i~~i~ 295 (332)
-.+++-+-. +...++ +||+|.....-..-+. .---..++..+.|+|+|||.+++... .+.+..+.+..
T Consensus 129 d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl 208 (246)
T PF01564_consen 129 DPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTL 208 (246)
T ss_dssp STTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHH
T ss_pred CCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHH
Confidence 011111111 223555 9999998632211100 00114799999999999999999752 23455555555
Q ss_pred hcCcceeeeccccccc--cc--ceEEEEEecc
Q 020011 296 KGMKWSCHKEDTEYGV--EK--EKLLLCQKKL 323 (332)
Q Consensus 296 ~~l~W~~~~~~~e~~~--~~--e~~li~~K~~ 323 (332)
++..-.+..+.. ..| .. -.++++.|..
T Consensus 209 ~~~F~~v~~~~~-~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 209 RSVFPQVKPYTA-YVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp HTTSSEEEEEEE-ECTTSCSSEEEEEEEESST
T ss_pred HHhCCceEEEEE-EcCeecccceeEEEEeCCC
Confidence 555555554422 222 11 2356666654
No 213
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.21 E-value=0.017 Score=56.22 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=34.5
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
...++|++||.||++.++++..--...|.++|. +.++..+.++
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 458999999999999999886310125789999 9999998876
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.19 E-value=0.058 Score=53.09 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=59.8
Q ss_pred CeEEEecCcchHHH----HHHhcCCCeEEEEeecCc-hhhHHHHHhcCc------------ccccccccccCC-C-CCCc
Q 020011 183 RNVMDMNTLYGGFA----AAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL------------IGTYHDWCEAFS-T-YPRT 243 (332)
Q Consensus 183 r~VLD~GCG~Ggfa----a~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl------------ig~~~d~~e~~~-~-yp~s 243 (332)
..|+|+|||.|.=. .+|...+. ....+|+|. .+.|+.+.++-. .|.|.+--+-+. + .+..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 37999999999743 45543332 125689999 778877766522 222211000011 1 1233
Q ss_pred cceeEe-hhhhccccccCCHHHHHHHHHh-hhcCCcEEEEEc
Q 020011 244 YDLLHL-DGLFTAESHRCDMKFVLLEMDR-ILRPNGYVIVRE 283 (332)
Q Consensus 244 FDlVh~-s~vf~h~~~~c~~~~iL~EmdR-VLRPGG~lii~d 283 (332)
..++.. ...|..+. +.+...+|.++.+ .|+|||.|+|.-
T Consensus 157 ~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 454444 34666665 3456679999999 999999999944
No 215
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.065 Score=53.77 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=58.9
Q ss_pred CeEEEecCcchHHHHHHhcCCCeE--EEEeecCchhhHH---HHHhcCcccccccc-----cccCCCCC--CccceeEeh
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWV--MNVVSSYAANTLA---VVYDRGLIGTYHDW-----CEAFSTYP--RTYDLLHLD 250 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~v--mnv~p~d~~~~l~---~a~eRGlig~~~d~-----~e~~~~yp--~sFDlVh~s 250 (332)
..|||+|.|.|+-+.++.+ +|- -+++-+....++. .-.++.....-.+| -+..+++| ..|++|+..
T Consensus 115 qsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 115 QSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred chhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4599999999976655533 331 0111122211221 11122222222333 22345666 999999988
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+=|-|-...-.+...+.-...+|+|||.|+|.++
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 7666654434455688888899999999999874
No 216
>PRK13699 putative methylase; Provisional
Probab=95.16 E-value=0.052 Score=50.66 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=30.4
Q ss_pred CCCCC-CccceeEeh---hh-hcccccc--------CCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 237 FSTYP-RTYDLLHLD---GL-FTAESHR--------CDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 237 ~~~yp-~sFDlVh~s---~v-f~h~~~~--------c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+..+| +++|||.++ ++ +.+...+ .-...++.|+.|||||||.+++.-.
T Consensus 13 l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 13 MARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred HHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 44577 888888887 11 1110000 1124689999999999999987533
No 217
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.12 E-value=0.12 Score=50.29 Aligned_cols=124 Identities=24% Similarity=0.333 Sum_probs=71.9
Q ss_pred ccccccccchhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----C
Q 020011 151 GSASAFKHDDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----G 225 (332)
Q Consensus 151 ~~~~~F~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----G 225 (332)
+...-|-.|.+.-+..+..|. ..++|||+=|-+|+|+.+-+..|.. .|+.+|. ..+++.+.+. |
T Consensus 102 gqktGlFlDqR~nR~~v~~~~---------~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg 170 (286)
T PF10672_consen 102 GQKTGLFLDQRENRKWVRKYA---------KGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNG 170 (286)
T ss_dssp SSSTSS-GGGHHHHHHHHHHC---------TTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT
T ss_pred CCcceEcHHHHhhHHHHHHHc---------CCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcC
Confidence 344556667776666666552 2469999999999999987777752 3566677 6677666654 4
Q ss_pred cccccccc-ccc-CCC---C--CCccceeEeh-hhhcccc--ccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 226 LIGTYHDW-CEA-FST---Y--PRTYDLLHLD-GLFTAES--HRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 226 lig~~~d~-~e~-~~~---y--p~sFDlVh~s-~vf~h~~--~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+...-|.+ ++. |.. . .+.||+|++. =.|..-. -.-+...++.-.-++|+|||.+++....
T Consensus 171 ~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 171 LDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 32112221 111 111 1 2689999985 1111100 0013346888899999999999987754
No 218
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.23 Score=45.77 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=64.7
Q ss_pred CCeEEEecCcchHHHHHHhcC---CCeE--EEEeecCchhhHHHHHhcCc--ccccccccccCCCCCCccceeEehhhh-
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD---PLWV--MNVVSSYAANTLAVVYDRGL--IGTYHDWCEAFSTYPRTYDLLHLDGLF- 253 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~---~v~v--mnv~p~d~~~~l~~a~eRGl--ig~~~d~~e~~~~yp~sFDlVh~s~vf- 253 (332)
...+|++|||.|-...+|++. ++.. +++.|.....++..|.-.+. .....|....+. +++-|++.-+-=+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCCcC
Confidence 556999999999888888775 2322 22333333445555554432 122222222221 1555555443111
Q ss_pred -------------ccc---cc-cCCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhcCcceeeec
Q 020011 254 -------------TAE---SH-RCDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 254 -------------~h~---~~-~c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~l~W~~~~~ 305 (332)
+-+ .+ +.-+..++.-+.-+|-|-|.|++..-.. -..+|-++.+.-.|.+++.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 000 00 1113347778888889999999865332 1234444666666766554
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.026 Score=52.37 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=61.8
Q ss_pred CCeEEEecCcchHHHHHHhcC---C--CeEEEEeecCc-hhhHHHHHhcCcccccccc-cc-c-CCCCC-CccceeEehh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD---P--LWVMNVVSSYA-ANTLAVVYDRGLIGTYHDW-CE-A-FSTYP-RTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~---~--v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~-~e-~-~~~yp-~sFDlVh~s~ 251 (332)
..+|+|+||-.||.+..+++. + +.++++.|.+. ++ +.++ .+.+++= |. . ....+ ..+|+|.+..
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~-V~~i-----q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG-VIFL-----QGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC-ceEE-----eeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 567999999999999887764 2 45566667766 33 2222 1222110 00 0 11234 4468887643
Q ss_pred hh--------ccccccCCHHHHHHHHH-hhhcCCcEEEEEc-----ChhHHHHHHHHHhcCc
Q 020011 252 LF--------TAESHRCDMKFVLLEMD-RILRPNGYVIVRE-----SSYFIDAVATIAKGMK 299 (332)
Q Consensus 252 vf--------~h~~~~c~~~~iL~Emd-RVLRPGG~lii~d-----~~~~~~~i~~i~~~l~ 299 (332)
.= .|.-. -.+..+..||. ++|+|||.|++.+ ..+++..++.+.+.++
T Consensus 120 ap~~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~ 180 (205)
T COG0293 120 APNTSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVK 180 (205)
T ss_pred CCCcCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeE
Confidence 21 12210 11224555555 5999999999976 3355666665555443
No 220
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.13 Score=51.02 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=62.4
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCC-eEEEEeecCc-hhhHHHHHhc----Cccccccccccc--CC-CCC--Cccc
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPL-WVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA--FS-TYP--RTYD 245 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v-~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~--~~-~yp--~sFD 245 (332)
+......+||||.++.||=+.+|++.-- ..+-|+.+|. +.-+....++ |+..+....+.+ +. .++ ..||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 4444568999999999987776666421 0112466777 5455444443 553211111121 11 234 2499
Q ss_pred eeEeh------hhhccccc------cCCH-------HHHHHHHHhhhcCCcEEEEEcCh
Q 020011 246 LLHLD------GLFTAESH------RCDM-------KFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 246 lVh~s------~vf~h~~~------~c~~-------~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.|.+. .++..=++ ..++ ..+|....++|||||.|+.+...
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 99863 34421110 0111 13899999999999999998843
No 221
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.45 E-value=0.028 Score=52.73 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=55.4
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc--ccccccccccCCCCCCccceeEehhhhcccc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL--IGTYHDWCEAFSTYPRTYDLLHLDGLFTAES 257 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl--ig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~ 257 (332)
...++||+|+|-|.....++..-- .|...+. ..|.......+. ++. .+|.+. .=.||+|.|-++|.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~ynVl~~-~ew~~t----~~k~dli~clNlLD--- 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKNYNVLTE-IEWLQT----DVKLDLILCLNLLD--- 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcCCceeee-hhhhhc----CceeehHHHHHHHH---
Confidence 357899999999998887755311 1122222 222222222222 221 222110 12399999999886
Q ss_pred ccCCH-HHHHHHHHhhhcC-CcEEEEEc
Q 020011 258 HRCDM-KFVLLEMDRILRP-NGYVIVRE 283 (332)
Q Consensus 258 ~~c~~-~~iL~EmdRVLRP-GG~lii~d 283 (332)
||.- -.+|.+++-+|+| .|.+|+.-
T Consensus 181 -Rc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 181 -RCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred -hhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 5543 4799999999999 89988753
No 222
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.43 E-value=0.13 Score=52.61 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHH----HhcCcccccccc--cccCCC-C-C-CccceeEe
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVV----YDRGLIGTYHDW--CEAFST-Y-P-RTYDLLHL 249 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a----~eRGlig~~~d~--~e~~~~-y-p-~sFDlVh~ 249 (332)
....+|||+=||.|+|+-+|+++.. .|.+++. +++++.| ...|+-.....- .+.+.+ . . ..||+|..
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 3467899999999999999997654 3444444 4444444 333443221111 122221 2 2 57899999
Q ss_pred hhhhccccccCCHH-HHHHHHHhhhcCCcEEEEEcChhHHHH
Q 020011 250 DGLFTAESHRCDMK-FVLLEMDRILRPNGYVIVRESSYFIDA 290 (332)
Q Consensus 250 s~vf~h~~~~c~~~-~iL~EmdRVLRPGG~lii~d~~~~~~~ 290 (332)
+ |+|.... .++.++.+ ++|-..++++=++..+-+
T Consensus 369 D------PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaR 403 (432)
T COG2265 369 D------PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLAR 403 (432)
T ss_pred C------CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHH
Confidence 8 7788887 55555554 678889999988765433
No 223
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.098 Score=47.43 Aligned_cols=117 Identities=12% Similarity=0.179 Sum_probs=68.7
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-h---hhHHHHHhcCccc--------ccccccccCCCCC-CccceeE
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-A---NTLAVVYDRGLIG--------TYHDWCEAFSTYP-RTYDLLH 248 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~---~~l~~a~eRGlig--------~~~d~~e~~~~yp-~sFDlVh 248 (332)
.|.||.+|.|+=++|.-|....+-+-.|--.|. + ..++.+..+...- -.|.| .+.+.-. ++||+|.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEE
Confidence 478999999999999888764332222222333 2 2344444443100 11111 1223344 8999999
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh--hHHHHHHHHHhcCccee
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS--YFIDAVATIAKGMKWSC 302 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~--~~~~~i~~i~~~l~W~~ 302 (332)
|++-+=. .+..+.++.-|.+.|||.|..++..|. +.+++..+.+...-..+
T Consensus 109 aADClFf---dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 109 AADCLFF---DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV 161 (201)
T ss_pred eccchhH---HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence 9832210 122357999999999999999998876 34555555554444333
No 224
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.93 E-value=0.18 Score=47.71 Aligned_cols=113 Identities=19% Similarity=0.301 Sum_probs=77.5
Q ss_pred hhHHHHHHHHH-hhcCCCCCCCCCeEEEecCcchHHHHHHhcCCC--eEEEEeecCc-hhhHHHHHhcC------ccccc
Q 020011 161 SKWNVRVKHYK-KLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPL--WVMNVVSSYA-ANTLAVVYDRG------LIGTY 230 (332)
Q Consensus 161 ~~W~~~v~~y~-~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v--~vmnv~p~d~-~~~l~~a~eRG------lig~~ 230 (332)
..|.+.+-|-. ..+ . .+.++||.+|=|.|-...++.+++. +.+ ++. ++.++..++-| ++...
T Consensus 84 m~WEtpiMha~A~ai---~-tkggrvLnVGFGMgIidT~iQe~~p~~H~I----iE~hp~V~krmr~~gw~ek~nViil~ 155 (271)
T KOG1709|consen 84 MRWETPIMHALAEAI---S-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI----IEAHPDVLKRMRDWGWREKENVIILE 155 (271)
T ss_pred hhhhhHHHHHHHHHH---h-hCCceEEEeccchHHHHHHHhhcCCcceEE----EecCHHHHHHHHhcccccccceEEEe
Confidence 46776665432 222 1 4578999999999999998888764 221 233 66777776665 24444
Q ss_pred ccccccCCCCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 231 HDWCEAFSTYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 231 ~d~~e~~~~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
..|-..+.+.| +.||=|.-.-.=+|+. ++-.+.+-+-|+|||||.|-...-
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy~e~yE---dl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTYSELYE---DLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred cchHhhhccccccCcceeEeechhhHHH---HHHHHHHHHhhhcCCCceEEEecC
Confidence 55655677888 9999988764435543 466788899999999999988663
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.88 E-value=0.12 Score=51.90 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=61.4
Q ss_pred CeEEEecCcchHHHHHHhcC--CCeEEEEeecCc-hhhHHHHHhc----Ccc--cccccccccCCCCC-CccceeEehhh
Q 020011 183 RNVMDMNTLYGGFAAAVIDD--PLWVMNVVSSYA-ANTLAVVYDR----GLI--GTYHDWCEAFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~--~v~vmnv~p~d~-~~~l~~a~eR----Gli--g~~~d~~e~~~~yp-~sFDlVh~s~v 252 (332)
-+|||+-||+|.++...+.+ ++ -.|+..|. +++++.+.+. ++. -.++.-+..+.... ..||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 47999999999999888876 44 24567777 7777766553 221 11211111122222 6799999974
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|. ....++...-+.+++||++.++-
T Consensus 123 fG------s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 FG------TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC------CcHHHHHHHHHhcccCCEEEEEe
Confidence 32 22468999999999999999984
No 226
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=93.76 E-value=0.058 Score=48.73 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=56.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccccccccccc----CCCC--C-CccceeEe
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIGTYHDWCEA----FSTY--P-RTYDLLHL 249 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig~~~d~~e~----~~~y--p-~sFDlVh~ 249 (332)
..+|||+=||+|.++-.-+++|.- .|+-+|. +..++.+.+. ++...++.++.. +... . ..||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 468999999999999888888863 3444555 4455444433 332212222221 2112 4 89999999
Q ss_pred hhhhccccccCC-HHHHHHHHH--hhhcCCcEEEEEcChh
Q 020011 250 DGLFTAESHRCD-MKFVLLEMD--RILRPNGYVIVRESSY 286 (332)
Q Consensus 250 s~vf~h~~~~c~-~~~iL~Emd--RVLRPGG~lii~d~~~ 286 (332)
.==+.. .. +..++.-+. .+|+++|.+|+-....
T Consensus 121 DPPY~~----~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAK----GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTS----CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCccc----chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 821110 11 255666665 7999999999977544
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.55 E-value=0.097 Score=44.81 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCCeEEEecCcchHHHHHHhc-----CCCeEEEEeecCc-hhhHHHHHhc
Q 020011 180 DKIRNVMDMNTLYGGFAAAVID-----DPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~-----~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
.....|+|+|||-|-++..|+. .. ...|.++|. +..++.+..|
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~--~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP--NLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC--CCeEEEEECCcHHHHHHHHH
Confidence 4578899999999999988887 32 235677776 5555555444
No 228
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.51 E-value=0.73 Score=45.71 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=46.7
Q ss_pred ccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh----------------h-HHHHHHHHHhcCcceeeec
Q 020011 243 TYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS----------------Y-FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 243 sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----------------~-~~~~i~~i~~~l~W~~~~~ 305 (332)
+||+|.....+. ...++-+++.-|..+|+|||++|=-.|. + ..+.+..+++.+-|++...
T Consensus 259 ~~d~VvTcfFID---Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 259 SYDVVVTCFFID---TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred ccceEEEEEEee---chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 599998874443 2346788999999999999999865543 1 3778899999999998765
No 229
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=93.44 E-value=0.49 Score=47.47 Aligned_cols=117 Identities=16% Similarity=0.076 Sum_probs=67.2
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHh----cCc-------ccccccccccCCCCCCccceeEe
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYD----RGL-------IGTYHDWCEAFSTYPRTYDLLHL 249 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~e----RGl-------ig~~~d~~e~~~~yp~sFDlVh~ 249 (332)
..|.|||+|||.|.+.-+-+..|.. .|..++..+|.+.|.. ..+ +|-+. . ...|...|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiE----d-ieLPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIE----D-IELPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCccc----c-ccCchhccEEEe
Confidence 4688999999999776655555542 2344444555554421 111 22221 1 236788999988
Q ss_pred hhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc-------ChhHHHHHHHHHhcCcceeeec
Q 020011 250 DGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE-------SSYFIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 250 s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d-------~~~~~~~i~~i~~~l~W~~~~~ 305 (332)
.-.=..+-+ +.+-.--.-.+|-|+|.|..+=+- -.+..-.++...+++-|--..+
T Consensus 250 EPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~f 311 (517)
T KOG1500|consen 250 EPMGYMLVN-ERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNF 311 (517)
T ss_pred ccchhhhhh-HHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhcc
Confidence 532222222 122222233459999999876433 2355567777788888865443
No 230
>PRK11524 putative methyltransferase; Provisional
Probab=93.31 E-value=0.22 Score=47.62 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhcCCcEEEEEcChhHHH
Q 020011 263 KFVLLEMDRILRPNGYVIVRESSYFID 289 (332)
Q Consensus 263 ~~iL~EmdRVLRPGG~lii~d~~~~~~ 289 (332)
..+|.|+.|+|||||.+++......+.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~~~~~~~ 86 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMNSTENMP 86 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence 469999999999999999976654433
No 231
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.29 E-value=0.96 Score=43.20 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCeEEEecCcch--HHHHHHhcCCCeEEEEeecCc---hhhHHHHHhcC----------cccccccccccC--CCCCCc
Q 020011 181 KIRNVMDMNTLYG--GFAAAVIDDPLWVMNVVSSYA---ANTLAVVYDRG----------LIGTYHDWCEAF--STYPRT 243 (332)
Q Consensus 181 ~~r~VLD~GCG~G--gfaa~L~~~~v~vmnv~p~d~---~~~l~~a~eRG----------lig~~~d~~e~~--~~yp~s 243 (332)
..+|||.+|+|+| |.++++.-.. +++-.|. ...++.+.+.+ ++....+|..+. +.++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~----~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGA----EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcc----eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 4678999999999 5556664332 2222222 33444443332 223345676652 334434
Q ss_pred -cceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 244 -YDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 244 -FDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
||+|.++.++.+... .+.++.=|.-.|--+|.+++.-
T Consensus 162 ~~DlilasDvvy~~~~---~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 162 PFDLILASDVVYEEES---FEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cccEEEEeeeeecCCc---chhHHHHHHHHHhcCCeEEEEE
Confidence 999999999987543 4566666667788888665544
No 232
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.16 E-value=0.47 Score=49.14 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=69.1
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccc-cccccc---cCCCCC-CccceeEehhhhcccc
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGT-YHDWCE---AFSTYP-RTYDLLHLDGLFTAES 257 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~-~~d~~e---~~~~yp-~sFDlVh~s~vf~h~~ 257 (332)
++|=+|||.-.+.-.|.+.|.. +|+.+|. +-.++.+..|+.... ..-|-+ .-+.|+ .+||+|..-.-|.++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999888762 5666676 666666666653110 000111 135699 9999999988777753
Q ss_pred ccC-------CHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 258 HRC-------DMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 258 ~~c-------~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
... .....+.|+.|+|+|||.++.-.-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 221 123478999999999999876554
No 233
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.06 E-value=0.022 Score=45.70 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=32.7
Q ss_pred EEecCcchHHHHHHhcC----CCeEEEEeecCc-h---hhHHHHHhcCcccccccccc----cCCCCC-CccceeEehhh
Q 020011 186 MDMNTLYGGFAAAVIDD----PLWVMNVVSSYA-A---NTLAVVYDRGLIGTYHDWCE----AFSTYP-RTYDLLHLDGL 252 (332)
Q Consensus 186 LD~GCG~Ggfaa~L~~~----~v~vmnv~p~d~-~---~~l~~a~eRGlig~~~d~~e----~~~~yp-~sFDlVh~s~v 252 (332)
|.+|+..|..+..|++. +. ..+..+|. + ...+.+.+.++...++-... .+..++ +.||+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~--~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGR--GKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp ----------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Ccccccccccccccccccccccc--CCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 57898899877766652 21 12334444 3 33444443444332221111 123466 8999999974
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.|-. .....-+..+.+.|+|||.+++-|
T Consensus 78 -~H~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2211 223457788888999999999865
No 234
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.63 E-value=0.13 Score=46.07 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=51.9
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Ccc---c-ccccccccCCCCC--CccceeEeh-
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLI---G-TYHDWCEAFSTYP--RTYDLLHLD- 250 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Gli---g-~~~d~~e~~~~yp--~sFDlVh~s- 250 (332)
+.|+|+-||.||-+.+++...- .|..+|. +..++.++.. |+. - ...|+-+....+. ..||+|++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 4699999999999999999864 3456666 6666666544 321 1 1222222222233 228999974
Q ss_pred ----------hhhcc--ccccCCHHHHHHHHHhhhcCCcEEEEEcCh-hHHHHHHHHHhcC
Q 020011 251 ----------GLFTA--ESHRCDMKFVLLEMDRILRPNGYVIVRESS-YFIDAVATIAKGM 298 (332)
Q Consensus 251 ----------~vf~h--~~~~c~~~~iL~EmdRVLRPGG~lii~d~~-~~~~~i~~i~~~l 298 (332)
.+|.- ...+.++.+++..+.++- |. +++-=|. .-+..+.+++..+
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-~n--v~l~LPRn~dl~ql~~~~~~l 135 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-PN--VVLFLPRNSDLNQLSQLTREL 135 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S---EEEEEETTB-HHHHHHT----
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-CC--EEEEeCCCCCHHHHHHHhccc
Confidence 12221 111234566777766653 33 3332222 2356666665433
No 235
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.59 E-value=0.46 Score=48.62 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=60.3
Q ss_pred CCCCCCCCeEEEecCcchH---HHHHH-hcCCCeEEEEeecCc-hhhHH----HHHhcCccc---ccccccccCC--CCC
Q 020011 176 ALGTDKIRNVMDMNTLYGG---FAAAV-IDDPLWVMNVVSSYA-ANTLA----VVYDRGLIG---TYHDWCEAFS--TYP 241 (332)
Q Consensus 176 ~l~~~~~r~VLD~GCG~Gg---faa~L-~~~~v~vmnv~p~d~-~~~l~----~a~eRGlig---~~~d~~e~~~--~yp 241 (332)
.+.+....+||||.|..|| +.|+| .+.|+ |...|. .+.+. .+..-|+-+ ..+|-- .|+ -||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~-ef~~~~~~ 310 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR-EFPEKEFP 310 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCcc-cccccccC
Confidence 3556667899999999996 33444 44565 344454 33333 233335533 333321 121 266
Q ss_pred CccceeE----ehh--hhccccccCCH-------------HHHHHHHHhhhcCCcEEEEEcCh
Q 020011 242 RTYDLLH----LDG--LFTAESHRCDM-------------KFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 242 ~sFDlVh----~s~--vf~h~~~~c~~-------------~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.+||-|. ||. |++--+.-|-. ..+|.-.-..+||||+++.+...
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 7999876 666 55431111111 13666777889999999998844
No 236
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.13 E-value=0.91 Score=43.99 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=62.7
Q ss_pred CCCeEEEecCcchHHHHHHhc-C-CCeEEEEeecCc-hhhHHHHHh-----cCccc--ccccccccC-CCCC-CccceeE
Q 020011 181 KIRNVMDMNTLYGGFAAAVID-D-PLWVMNVVSSYA-ANTLAVVYD-----RGLIG--TYHDWCEAF-STYP-RTYDLLH 248 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~-~-~v~vmnv~p~d~-~~~l~~a~e-----RGlig--~~~d~~e~~-~~yp-~sFDlVh 248 (332)
..++|+=+|||.=-+++-+.. + +. .+.|..+|. +++++.+.. -||-. .++. ++.. .++. ..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~-~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~-~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGP-GARVHNIDIDPEANELARRLVASDLGLSKRMSFIT-ADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEE-S-GGGG-GG----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEe-cchhccccccccCCEEE
Confidence 356999999997666555443 2 22 234667777 666655531 12211 1110 0111 2456 8999999
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhH---HHHHHHHHhcCcceeeecccccccccceEEEEEecc
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYF---IDAVATIAKGMKWSCHKEDTEYGVEKEKLLLCQKKL 323 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~---~~~i~~i~~~l~W~~~~~~~e~~~~~e~~li~~K~~ 323 (332)
-...... +...-..+|..+.+.++||..+++|..... +...-+...--.|++....|..+..-.-++|++|..
T Consensus 198 lAalVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 198 LAALVGM--DAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp E-TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred Ehhhccc--ccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 8865542 123557899999999999999999975531 111112112227787666666666556799999863
No 237
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.04 E-value=0.24 Score=50.09 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.4
Q ss_pred CC-CccceeEehhhhcccc
Q 020011 240 YP-RTYDLLHLDGLFTAES 257 (332)
Q Consensus 240 yp-~sFDlVh~s~vf~h~~ 257 (332)
|| +|.+++|++..+|-+.
T Consensus 158 fP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred cCCCceEEEEeeccceecc
Confidence 89 9999999998887543
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.89 E-value=6.4 Score=37.04 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=64.9
Q ss_pred CCCCeEEEecCcchHHHHHHhc---CC-CeEEEEeecCchhhHHHHHhcCc-ccccccccccCCCCC-------Ccccee
Q 020011 180 DKIRNVMDMNTLYGGFAAAVID---DP-LWVMNVVSSYAANTLAVVYDRGL-IGTYHDWCEAFSTYP-------RTYDLL 247 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~---~~-v~vmnv~p~d~~~~l~~a~eRGl-ig~~~d~~e~~~~yp-------~sFDlV 247 (332)
.....||=+|+..|++..+..+ .| +..+-++|.-..+.|..+.+|-. +..+.| + .+| ...|+|
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D---A--~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED---A--RKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc---c--CCcHHhhhhcccccEE
Confidence 3467899999999999988876 34 34555566666888999999964 444443 2 233 445666
Q ss_pred EehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 248 HLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 248 h~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.+. +..+.+.+=+..-++.-||+||++++.-
T Consensus 150 y~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 150 YQD-----VAQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEe-----cCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 665 4434444556777899999999887754
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=90.86 E-value=0.26 Score=41.16 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=23.2
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHH
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLA 219 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~ 219 (332)
+|||+|||.|.++..++..+.- ..+..++. +.+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHH
Confidence 4899999999999988876432 03344444 44443
No 240
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=90.82 E-value=1 Score=41.62 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=20.2
Q ss_pred ccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 243 TYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 243 sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.-|+|.+++..= ..++...|.++-.-||||-.+|...
T Consensus 122 ~AdvVf~Nn~~F----~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 122 DADVVFVNNTCF----DPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp C-SEEEE--TTT-----HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred CCCEEEEecccc----CHHHHHHHHHHHhcCCCCCEEEECC
Confidence 358999985431 1234456677778888887776544
No 241
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.63 E-value=0.071 Score=51.40 Aligned_cols=60 Identities=20% Similarity=0.583 Sum_probs=41.7
Q ss_pred EEEEeeceecCCceEEeccCCccccccccCC-CCCHHHHHHHHHHHHHHHHhcccceeeeecce
Q 020011 11 YLLEVHRILRPGGFWVLSGPPVNYEHRWRGW-NTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDI 73 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~cw~~~~~~~~~ 73 (332)
||-.|.++|+|||+||=-||-. |. +.+. ..++..++=-+++|..+++.+-|+.+.++..+
T Consensus 184 Yi~tI~~lLkpgG~WIN~GPLl-yh--~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 184 YIETIEHLLKPGGYWINFGPLL-YH--FEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESSI 244 (270)
T ss_pred HHHHHHHHhccCCEEEecCCcc-cc--CCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEee
Confidence 4456789999999999999976 42 2222 11122234348899999999999998766544
No 242
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.58 E-value=0.086 Score=44.42 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=36.0
Q ss_pred ccceeEehhhhc--cccc-cCCHHHHHHHHHhhhcCCcEEEEEcCh--------hHHHHHHHHHhcCccee
Q 020011 243 TYDLLHLDGLFT--AESH-RCDMKFVLLEMDRILRPNGYVIVRESS--------YFIDAVATIAKGMKWSC 302 (332)
Q Consensus 243 sFDlVh~s~vf~--h~~~-~c~~~~iL~EmdRVLRPGG~lii~d~~--------~~~~~i~~i~~~l~W~~ 302 (332)
.||+|.|-.|-. |+.. ++.+..++..|.+.|||||.||+--.+ ...+.+.+..++|.+..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 389999976654 3321 245667999999999999999997754 22345555566666543
No 243
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=90.53 E-value=0.84 Score=45.23 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=55.7
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHH----hcCccc--ccccccccCC----------C-----CC
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY----DRGLIG--TYHDWCEAFS----------T-----YP 241 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~----eRGlig--~~~d~~e~~~----------~-----yp 241 (332)
+|||+-||.|+|+..|++..-. |.+++. +++++.|. ..|+-. .++.-++.+. . ..
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~---V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKK---VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSE---EEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred cEEEEeecCCHHHHHHHhhCCe---EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 6999999999999999998664 455555 55655554 334421 1111011111 0 11
Q ss_pred -CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhH-HHHHHHHHhcCcceee
Q 020011 242 -RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYF-IDAVATIAKGMKWSCH 303 (332)
Q Consensus 242 -~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~-~~~i~~i~~~l~W~~~ 303 (332)
..||+|... |+|..+...+.++ +.++.=.++++=++.. ...++.+.+ .+++.
T Consensus 276 ~~~~d~vilD------PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~ 329 (352)
T PF05958_consen 276 SFKFDAVILD------PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLE 329 (352)
T ss_dssp CTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEE
T ss_pred hcCCCEEEEc------CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEE
Confidence 257888776 6666555444443 2356667777766654 444555544 46554
No 244
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.31 E-value=1.3 Score=47.97 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=44.2
Q ss_pred EEeecCc-hhhHHHHHhc----Cccccc----ccccccCCCCC-CccceeEehhhh-ccccccCCHHHHHHHHHhhhc--
Q 020011 208 NVVSSYA-ANTLAVVYDR----GLIGTY----HDWCEAFSTYP-RTYDLLHLDGLF-TAESHRCDMKFVLLEMDRILR-- 274 (332)
Q Consensus 208 nv~p~d~-~~~l~~a~eR----Glig~~----~d~~e~~~~yp-~sFDlVh~s~vf-~h~~~~c~~~~iL~EmdRVLR-- 274 (332)
.+.++|. +.++..|.+. |+-..+ .|+.+...+++ ++||+|.|+==+ ..+.+..++..+-.++-+.||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 4788888 8888777655 542211 12222112344 679999998211 112111233344444444444
Q ss_pred -CCcEEEEEcChhHHHH
Q 020011 275 -PNGYVIVRESSYFIDA 290 (332)
Q Consensus 275 -PGG~lii~d~~~~~~~ 290 (332)
||+.+++-.+..-+.+
T Consensus 338 ~~g~~~~llt~~~~l~~ 354 (702)
T PRK11783 338 FGGWNAALFSSSPELLS 354 (702)
T ss_pred CCCCeEEEEeCCHHHHH
Confidence 9998877666554333
No 245
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=89.85 E-value=1.2 Score=41.49 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=55.3
Q ss_pred CCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHH----hcCc-ccccccccccCCCCCCccceeEehhhh
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY----DRGL-IGTYHDWCEAFSTYPRTYDLLHLDGLF 253 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~----eRGl-ig~~~d~~e~~~~yp~sFDlVh~s~vf 253 (332)
-+.++|||+|+|.|--+.+-+..|.. .|+..|. +...+.+. ..|. |...|. ....-|..||+|.++.+|
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~---d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHA---DLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeec---cccCCCcceeEEEeecee
Confidence 45688999999999544333333321 1223333 33333322 1222 333342 122224999999999998
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
.- +..-..++.=.+|+..-|-.+++.|+.
T Consensus 153 y~---~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 153 YN---HTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred cC---chHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 63 223345777566666677777777765
No 246
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=89.66 E-value=0.22 Score=47.99 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=58.0
Q ss_pred CCCCeEEEecCcchHHHHHHhcC---CCeEEEEeecCc-hhhHHHHHh---c-Cccc--cc-ccccccCCCCC-Ccccee
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDD---PLWVMNVVSSYA-ANTLAVVYD---R-GLIG--TY-HDWCEAFSTYP-RTYDLL 247 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~---~v~vmnv~p~d~-~~~l~~a~e---R-Glig--~~-~d~~e~~~~yp-~sFDlV 247 (332)
....+||||.|+.||-+.+|++. .. .|+..|. .+-+....+ | |+.. .. +|-......++ ..||.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g---~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKG---EIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTS---EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchh---HHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 34567999999999977777663 12 2445555 444443333 3 4422 11 22111111133 469999
Q ss_pred Ee----h--hhhccccc------cCCHH-------HHHHHHHhhh----cCCcEEEEEcCh
Q 020011 248 HL----D--GLFTAESH------RCDMK-------FVLLEMDRIL----RPNGYVIVRESS 285 (332)
Q Consensus 248 h~----s--~vf~h~~~------~c~~~-------~iL~EmdRVL----RPGG~lii~d~~ 285 (332)
.. | .++.+-++ ..++. .+|....+.| ||||+++.+...
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 86 2 23332110 01111 3899999999 999999999843
No 247
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=89.24 E-value=0.17 Score=48.35 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=33.7
Q ss_pred CCccceeEehhhhcccc-ccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 241 PRTYDLLHLDGLFTAES-HRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 241 p~sFDlVh~s~vf~h~~-~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|..||+|.+...|+... +......++.-+-+.|||||.||+..
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 34699999998888653 33334569999999999999999976
No 248
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=88.64 E-value=2.1 Score=40.02 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=59.9
Q ss_pred CCeEEEecCcchHHHHHHhc----CCCeEEEEeecCc--------hhhHHHHHhcCc--ccccccccccCCCCC-Cccce
Q 020011 182 IRNVMDMNTLYGGFAAAVID----DPLWVMNVVSSYA--------ANTLAVVYDRGL--IGTYHDWCEAFSTYP-RTYDL 246 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~----~~v~vmnv~p~d~--------~~~l~~a~eRGl--ig~~~d~~e~~~~yp-~sFDl 246 (332)
..+|.|+=-|-|-|++-|.. +| .|.+++|.+. +..-..++|-+. ...+.. ..+.-++ +..|+
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~--~~~A~~~pq~~d~ 125 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGK--PLVALGAPQKLDL 125 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCC--cccccCCCCcccc
Confidence 57899999999988876655 35 4667777765 112223333322 111100 0011124 77777
Q ss_pred eEehhhhcccc----ccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 247 LHLDGLFTAES----HRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 247 Vh~s~vf~h~~----~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+..+..-+-+. +.-...++-.++.+.|||||.+.+-|+.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 76643332111 1234567999999999999999998854
No 249
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.13 E-value=2.2 Score=39.98 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=53.4
Q ss_pred CCeEEEecCc-chHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccc----cccCCCCC-CccceeEehhhh
Q 020011 182 IRNVMDMNTL-YGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDW----CEAFSTYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~----~e~~~~yp-~sFDlVh~s~vf 253 (332)
..+||..||| .|.++..+++ .|..+ ..++. ++..+.+.+.|+...+... .+.....+ +.+|++....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V---~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~-- 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAV---IAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV-- 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEE---EEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC--
Confidence 4578888876 4677777766 46543 33333 5666777666652222110 00010123 6788876431
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.....+.++.|.|+|+|.++...
T Consensus 241 -------g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 241 -------GTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred -------CCHHHHHHHHHHhhcCCEEEEEC
Confidence 11358899999999999999764
No 250
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=86.51 E-value=1.7 Score=41.74 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc----ccccccccccCCCC--CC--ccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL----IGTYHDWCEAFSTY--PR--TYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl----ig~~~d~~e~~~~y--p~--sFDlVh~s 250 (332)
..+||.+|+|.|+++..|++++..| +.++. +..++...++-- +-.++ +.++.+ |. .++.|.++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v---~aiEiD~~l~~~L~~~~~~~~n~~vi~---~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARV---TAIEIDRRLAEVLKERFAPYDNLTVIN---GDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeE---EEEEeCHHHHHHHHHhcccccceEEEe---CchhcCcchhhcCCCEEEEc
Confidence 6789999999999999999998744 33444 445555544421 11222 223333 33 67887776
No 251
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.08 E-value=1.5 Score=42.74 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=63.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC--cc--cccccccccCCCCC-CccceeEeh-----
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG--LI--GTYHDWCEAFSTYP-RTYDLLHLD----- 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG--li--g~~~d~~e~~~~yp-~sFDlVh~s----- 250 (332)
...||.+|-|+|.++..|.+.+..| +.++. +.++.....|+ .. +.+...-..+.--+ -.||+++++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkV---vA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGKKV---VAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQI 135 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCeE---EEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCccc
Confidence 5779999999999999999998844 55555 77887777773 33 22211112233334 567877772
Q ss_pred ---hhhcccc----ccCCHHHHHHHH--HhhhcCCcEEEEEcCh--hHHHHHHHHHh
Q 020011 251 ---GLFTAES----HRCDMKFVLLEM--DRILRPNGYVIVRESS--YFIDAVATIAK 296 (332)
Q Consensus 251 ---~vf~h~~----~~c~~~~iL~Em--dRVLRPGG~lii~d~~--~~~~~i~~i~~ 296 (332)
.||-.+. .+|.+.-+-.|. +-+-|||-.++.+-.. +++.++.-+.+
T Consensus 136 SSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~K 192 (315)
T KOG0820|consen 136 SSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMK 192 (315)
T ss_pred cCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhhee
Confidence 2332222 234332222232 2255678777765443 34445544443
No 252
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=85.86 E-value=9.1 Score=35.33 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=70.3
Q ss_pred EEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhH----HHHHhcCcccccccc-cccCCCCC-Cc-cceeEehhhhccc
Q 020011 185 VMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTL----AVVYDRGLIGTYHDW-CEAFSTYP-RT-YDLLHLDGLFTAE 256 (332)
Q Consensus 185 VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l----~~a~eRGlig~~~d~-~e~~~~yp-~s-FDlVh~s~vf~h~ 256 (332)
|.|+||--|-+..+|.+++. +..+...|. +.-+ +.+...|+...+... +..|...+ +. .|.|..+.+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG--- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG--- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCC---
Confidence 68999999999999999986 223444444 3333 344444665433322 23466666 43 7877776432
Q ss_pred cccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeec
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~ 305 (332)
...+.++|.+....++..-.||+.-... ...++..+....|.....
T Consensus 77 --G~lI~~ILe~~~~~~~~~~~lILqP~~~-~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 --GELIIEILEAGPEKLSSAKRLILQPNTH-AYELRRWLYENGFEIIDE 122 (205)
T ss_dssp --HHHHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHHHTTEEEEEE
T ss_pred --HHHHHHHHHhhHHHhccCCeEEEeCCCC-hHHHHHHHHHCCCEEEEe
Confidence 2346689999988888877888866554 578899999999988754
No 253
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.04 E-value=2.5 Score=43.89 Aligned_cols=99 Identities=19% Similarity=0.095 Sum_probs=60.7
Q ss_pred CCeEEEecCcch--HHHHHHhcCC-C-eEEEEeecCchhhHHHHH--hcC--cc------c-ccccccccCCCCC--Ccc
Q 020011 182 IRNVMDMNTLYG--GFAAAVIDDP-L-WVMNVVSSYAANTLAVVY--DRG--LI------G-TYHDWCEAFSTYP--RTY 244 (332)
Q Consensus 182 ~r~VLD~GCG~G--gfaa~L~~~~-v-~vmnv~p~d~~~~l~~a~--eRG--li------g-~~~d~~e~~~~yp--~sF 244 (332)
.+.++|+|.|.| +.++.+.-+. . -++.|.+... |+..+. -|+ -+ + ..| +.++|-+ +.|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~--~~~~~e~~lr~~~~~g~~~v~~~~~~---r~~~pi~~~~~y 275 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRA--MLKQSEKNLRDGSHIGEPIVRKLVFH---RQRLPIDIKNGY 275 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchH--HHHHHHHhhcChhhcCchhccccchh---cccCCCCcccce
Confidence 456888887766 4555555443 1 1233433333 222211 122 01 1 222 3456665 669
Q ss_pred ceeEehhhhccccccCCHHHHHHHHHh-hhcCCcEEEEEcCh
Q 020011 245 DLLHLDGLFTAESHRCDMKFVLLEMDR-ILRPNGYVIVRESS 285 (332)
Q Consensus 245 DlVh~s~vf~h~~~~c~~~~iL~EmdR-VLRPGG~lii~d~~ 285 (332)
|||.|++.++++.+.....++..+..| ..||||++++...-
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999999999998877666677777765 68999999998743
No 254
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=84.80 E-value=2.2 Score=39.14 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc---ccccccccCCC-CCC--ccceeEe
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG---TYHDWCEAFST-YPR--TYDLLHL 249 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig---~~~d~~e~~~~-yp~--sFDlVh~ 249 (332)
..-++||+=||+|+++..-+++|.-. ++-++. ..+.+++.+. ++.+ .++.-...++. -.. .||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~--~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAAR--VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCce--EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 34689999999999998888888643 333444 4455444443 2222 12211112222 232 4999999
Q ss_pred hhhhccccccCCH--H--HHHHHHHhhhcCCcEEEEEcChh
Q 020011 250 DGLFTAESHRCDM--K--FVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 250 s~vf~h~~~~c~~--~--~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
.==|. ...+ + -++.+-...|+|+|.+++-...+
T Consensus 121 DPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 121 DPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 83332 1122 1 23344668899999999977665
No 255
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=84.44 E-value=4.2 Score=37.95 Aligned_cols=132 Identities=16% Similarity=0.259 Sum_probs=62.9
Q ss_pred CCeEEEecCcchHHHHHHhcC----C-CeEEEEeecCchhhHHHHHhcCc--ccccccccccCCCCC-CccceeEehhh-
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD----P-LWVMNVVSSYAANTLAVVYDRGL--IGTYHDWCEAFSTYP-RTYDLLHLDGL- 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~----~-v~vmnv~p~d~~~~l~~a~eRGl--ig~~~d~~e~~~~yp-~sFDlVh~s~v- 252 (332)
..+|||+||..|+...--.++ | +..+++.++..+....++...-+ +..+... |.-.| +..|+|.+...
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki---~e~lp~r~VdvVlSDMap 146 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKI---FEALPNRPVDVVLSDMAP 146 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHH---HHhCCCCcccEEEeccCC
Confidence 568999999999988765554 1 23334433333222222211000 1111111 22246 88888877532
Q ss_pred -------hcccc--ccCCHHHHHHHHHhhhcCCcEEEEEc-----ChhHHHHHHHHHhcCcceeeecccc--cccccceE
Q 020011 253 -------FTAES--HRCDMKFVLLEMDRILRPNGYVIVRE-----SSYFIDAVATIAKGMKWSCHKEDTE--YGVEKEKL 316 (332)
Q Consensus 253 -------f~h~~--~~c~~~~iL~EmdRVLRPGG~lii~d-----~~~~~~~i~~i~~~l~W~~~~~~~e--~~~~~e~~ 316 (332)
..|+. +-| ..+|.=.--.|+|+|.|+.-- .+.....+++..... .....+ -+...|-.
T Consensus 147 naTGvr~~Dh~~~i~LC--~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~V----k~vKP~Asr~eS~E~y 220 (232)
T KOG4589|consen 147 NATGVRIRDHYRSIELC--DSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNV----KKVKPDASRDESAETY 220 (232)
T ss_pred CCcCcchhhHHHHHHHH--HHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhc----EeeCCcccccccccee
Confidence 11211 112 123333334567999999843 333444444443322 222111 11146888
Q ss_pred EEEEec
Q 020011 317 LLCQKK 322 (332)
Q Consensus 317 li~~K~ 322 (332)
+||.+-
T Consensus 221 ~v~~~~ 226 (232)
T KOG4589|consen 221 LVCLNF 226 (232)
T ss_pred eeeeec
Confidence 888763
No 256
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.36 E-value=2.5 Score=41.75 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=11.9
Q ss_pred CC-CccceeEehhhhccc
Q 020011 240 YP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 240 yp-~sFDlVh~s~vf~h~ 256 (332)
|| +|.|++|++..||.+
T Consensus 103 fP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 103 FPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp S-TT-EEEEEEES-TTB-
T ss_pred CCCCceEEEEEechhhhc
Confidence 78 999999999988865
No 257
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.16 E-value=0.76 Score=40.67 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcC
Q 020011 262 MKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
+..++.|+.|+|||||.+++.-.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHhhcCCCeeEEEEec
Confidence 45799999999999999998753
No 258
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.70 E-value=4.8 Score=36.19 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc----ccccccccccCCC-CC-CccceeEe
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL----IGTYHDWCEAFST-YP-RTYDLLHL 249 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl----ig~~~d~~e~~~~-yp-~sFDlVh~ 249 (332)
++.-....++|+|||.|-+.-+....+. -.|.++|. +++|++...... ...+. -|..... +. +.||.+..
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEvqidlL-qcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEVQIDLL-QCDILDLELKGGIFDTAVI 120 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhhhhhee-eeeccchhccCCeEeeEEe
Confidence 4433456799999999976644333322 14688999 889887653321 11110 1222222 23 88898888
Q ss_pred hhhhccccccCCHH--HHHHHHHh
Q 020011 250 DGLFTAESHRCDMK--FVLLEMDR 271 (332)
Q Consensus 250 s~vf~h~~~~c~~~--~iL~EmdR 271 (332)
+-=|.--....+++ .+-.+|.|
T Consensus 121 NppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 121 NPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred cCCCCcccccccHHHHHHHHHHHH
Confidence 76665322223343 34455555
No 259
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.35 E-value=1.4 Score=44.47 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.5
Q ss_pred CCC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 239 TYP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 239 ~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
..| ++||.+.-++.++.+++ ......+.++.|.+||||.++++.-.
T Consensus 290 ~~~~~s~~~~vL~D~~Dwm~~-~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 290 RLPPGSFDRFVLSDHMDWMDP-EQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred hCCCCCeeEEEecchhhhCCH-HHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 366 99999999999998875 67888999999999999999999844
No 260
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=81.23 E-value=3.4 Score=40.62 Aligned_cols=100 Identities=21% Similarity=0.037 Sum_probs=56.9
Q ss_pred CCeEEEecCcc-hHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhc-Cc--ccccc--cccccCCCC-C-CccceeEehh
Q 020011 182 IRNVMDMNTLY-GGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDR-GL--IGTYH--DWCEAFSTY-P-RTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eR-Gl--ig~~~--d~~e~~~~y-p-~sFDlVh~s~ 251 (332)
..+||..|||. |.+++.+++. +.. .+..++. ++.++.+.+. +. +.... ++.+.+..+ + +.+|+|.-.-
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 45799999987 6676666654 542 2344444 6677788776 32 11111 121222122 2 5788886531
Q ss_pred -----------hhccc-cccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 252 -----------LFTAE-SHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 252 -----------vf~h~-~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+..|. ....+-...+.++.|.|+|+|.+++..
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 11111 001112458899999999999999865
No 261
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=80.99 E-value=1.3 Score=41.89 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=30.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
....|||+|+|+|.++.+|.+.+. ++..++. ++..+...++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~ 71 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKER 71 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHH
Confidence 467899999999999999999875 3444444 5555555553
No 262
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=79.64 E-value=2 Score=40.14 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=27.3
Q ss_pred EEeeceecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeeee
Q 020011 13 LEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKK 70 (332)
Q Consensus 13 ~E~dRvLRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~ 70 (332)
-++-|+|+|||++|+|+.-. + +...+.+..+..-++.+...
T Consensus 197 ~~~~~~LkpgG~lilsgi~~-------------~----~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 197 PDLARLLKPGGRLILSGILE-------------E----QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred HHHHHhcCCCcEEEEEECcH-------------h----hHHHHHHHHHHCCCEEEEEE
Confidence 46789999999999998742 1 12345556666667665433
No 263
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=78.53 E-value=5.3 Score=39.89 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=70.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc----Cccc----ccccccccCCCCCCccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR----GLIG----TYHDWCEAFSTYPRTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR----Glig----~~~d~~e~~~~yp~sFDlVh~s~v 252 (332)
...||||=||.|-|+-.++..+.- .|..+|. |.++....+. ++-+ ...| |..+.+-.+.||-|.....
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD-~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD-AREVAPELGVADRIIMGLP 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEecc-HHHhhhccccCCEEEeCCC
Confidence 568999999999999999888762 2677777 7777665554 2222 1222 1112222288998877732
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcCh---h----HHHHHHHHHhcCcc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRESS---Y----FIDAVATIAKGMKW 300 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~---~----~~~~i~~i~~~l~W 300 (332)
- .-..++-..-+.||+||++-.=... + ....++..+.++.-
T Consensus 266 ~-------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 266 K-------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred C-------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 2 2246888888999999999875533 1 35667777766643
No 264
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.98 E-value=5.7 Score=39.66 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=58.2
Q ss_pred CCeEEEecCc-chHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccc-cccCCCCCCccceeEehhhhcccc
Q 020011 182 IRNVMDMNTL-YGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDW-CEAFSTYPRTYDLLHLDGLFTAES 257 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~-~e~~~~yp~sFDlVh~s~vf~h~~ 257 (332)
...|+=+|+| .|..|..+++ .+. .|+.++. ++.++.|++-|.--.+..- -+.+......||+|...-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga---~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGA---EVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---eEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 4556666655 5566766666 454 6677777 8888888887753322110 0111222345998887622
Q ss_pred ccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 258 HRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 258 ~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
...+...-+.||+||.+++...+
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 35778888999999999997755
No 265
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.80 E-value=3.8 Score=40.01 Aligned_cols=56 Identities=21% Similarity=0.384 Sum_probs=42.1
Q ss_pred CCCCccceeEehhhhccccccCCHHHHHH-HHHhhhcCCcEEEEEcCh-----------hHHHHHHHHHhcCcceee
Q 020011 239 TYPRTYDLLHLDGLFTAESHRCDMKFVLL-EMDRILRPNGYVIVRESS-----------YFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 239 ~yp~sFDlVh~s~vf~h~~~~c~~~~iL~-EmdRVLRPGG~lii~d~~-----------~~~~~i~~i~~~l~W~~~ 303 (332)
-|.+-||+|+.++-..| .|. |+.++++|||.||+-... .+.++|+++|+.-.|+..
T Consensus 218 ky~~~Fd~ifvs~s~vh---------~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 218 KYQNFFDLIFVSCSMVH---------FLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hhcCCCCEEEEhhhhHh---------hcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 47799999999854433 333 588999999999997642 467889999988877654
No 266
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=76.25 E-value=0.79 Score=38.68 Aligned_cols=19 Identities=37% Similarity=0.849 Sum_probs=12.9
Q ss_pred eceecCCceEEeccCCccccc
Q 020011 16 HRILRPGGFWVLSGPPVNYEH 36 (332)
Q Consensus 16 dRvLRpgGy~v~s~ppv~~~~ 36 (332)
=++|||||+||+-..| |+.
T Consensus 31 ~~~L~pGG~lilEpQ~--w~s 49 (110)
T PF06859_consen 31 YSLLRPGGILILEPQP--WKS 49 (110)
T ss_dssp HHHEEEEEEEEEE-----HHH
T ss_pred HHhhCCCCEEEEeCCC--cHH
Confidence 3569999999999887 544
No 267
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=75.59 E-value=12 Score=32.77 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=61.3
Q ss_pred EeecCc-hhhHHHHHhc----Cccc---ccccccccCCCCC-C-ccceeEehhhhccccccC--------CHHHHHHHHH
Q 020011 209 VVSSYA-ANTLAVVYDR----GLIG---TYHDWCEAFSTYP-R-TYDLLHLDGLFTAESHRC--------DMKFVLLEMD 270 (332)
Q Consensus 209 v~p~d~-~~~l~~a~eR----Glig---~~~d~~e~~~~yp-~-sFDlVh~s~vf~h~~~~c--------~~~~iL~Emd 270 (332)
|.++|. ++++....+| |+.. .+|+-=+.+..|- . .+|++.-+ |-|+|... .-..+|...-
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 456677 6666666555 3321 2222213344553 4 89988877 56665321 0124899999
Q ss_pred hhhcCCcEEEEEcCh------hHHHHHHHHHhcC---cceeeeccccccc-ccceEEEEEe
Q 020011 271 RILRPNGYVIVRESS------YFIDAVATIAKGM---KWSCHKEDTEYGV-EKEKLLLCQK 321 (332)
Q Consensus 271 RVLRPGG~lii~d~~------~~~~~i~~i~~~l---~W~~~~~~~e~~~-~~e~~li~~K 321 (332)
++|+|||.+++.-=+ +..+.+.+.+++| .|++..+..-+.. .+..+++.+|
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 999999999996522 3455666666554 6777666555555 4555666655
No 268
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=75.57 E-value=3.6 Score=39.02 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=41.1
Q ss_pred cccccchhhHHHHHHHHH-h-hcC--CCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCc---
Q 020011 154 SAFKHDDSKWNVRVKHYK-K-LLP--ALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGL--- 226 (332)
Q Consensus 154 ~~F~~d~~~W~~~v~~y~-~-~l~--~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGl--- 226 (332)
.+|..+...++.+-..-. + ++. .++.+...+|||.-||.|.=|.-|+..|. .|+.++....+......||
T Consensus 44 vDF~~g~~~~R~~~~~g~~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~ 120 (234)
T PF04445_consen 44 VDFHPGAAAYRRKHGGGKGDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRA 120 (234)
T ss_dssp --SSSHHHHHHHHHSSGGGSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHhhcCCCccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHH
Confidence 457777666654321111 1 111 35555456899999999975555554465 3444444333333333332
Q ss_pred -------------ccccccccccCCCCC-CccceeEehhhhccc
Q 020011 227 -------------IGTYHDWCEAFSTYP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 227 -------------ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~ 256 (332)
+-.+|.-...++.-+ ++||+|...=.|.|-
T Consensus 121 ~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 121 QQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp HHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S----
T ss_pred HhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCCc
Confidence 111221111223345 999999999888874
No 269
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=72.70 E-value=13 Score=37.55 Aligned_cols=93 Identities=10% Similarity=0.215 Sum_probs=60.1
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc---hhhH-HHHHhcCcccccccccccCCCCCCccceeEehhhhcccc-c
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA---ANTL-AVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAES-H 258 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~---~~~l-~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~-~ 258 (332)
+||=+|=.+|.++.+|+..++.. + .|. ...+ +-+...|+.+....+-....++|+.+|+|..- +| .
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~-----~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--I--GDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK-----VPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--e--ehHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEE-----eCCC
Confidence 68999999999999999766632 2 333 2223 33333356443212223345677779976543 43 2
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
....+..|.-+.++|.||+.+|+-...
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 234567889999999999999887755
No 270
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=72.06 E-value=10 Score=38.75 Aligned_cols=127 Identities=19% Similarity=0.266 Sum_probs=75.9
Q ss_pred ccccccchhhHHHHHH-HHHhhc--CCCCC-CCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcC--
Q 020011 153 ASAFKHDDSKWNVRVK-HYKKLL--PALGT-DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRG-- 225 (332)
Q Consensus 153 ~~~F~~d~~~W~~~v~-~y~~~l--~~l~~-~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRG-- 225 (332)
..-|-.++-++.++-. .|-+.+ |.+.. ...|.||=+|-|-|--++.|.+.+. ++.|+-+|. |.+++++...-
T Consensus 257 ~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~-~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 257 LRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQ-VEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred eEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCC-cceEEEEecCHHHHHHhhhhhHh
Confidence 3334444445554444 244422 44432 2478899999999999999999873 467777888 88998887321
Q ss_pred --c-cccccc-----ccc-cCC---CCCCccceeEehhhhccccccCCH-------HHHHHHHHhhhcCCcEEEEEcCh
Q 020011 226 --L-IGTYHD-----WCE-AFS---TYPRTYDLLHLDGLFTAESHRCDM-------KFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 226 --l-ig~~~d-----~~e-~~~---~yp~sFDlVh~s~vf~h~~~~c~~-------~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+ .|.+.| ..+ +|. +=.+.||.|+.. ++|+.+. ..+-.-..|-|+++|.+++....
T Consensus 336 r~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred hhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 1 111110 001 111 112789999887 3332222 12444566778899999998754
No 271
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=70.58 E-value=10 Score=36.81 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=61.6
Q ss_pred CCeEEEecCcchHHHHHHhcC----CC-eEEEEeecCchhhHHHHHhcCc-ccccccccccCCCCC-------CccceeE
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD----PL-WVMNVVSSYAANTLAVVYDRGL-IGTYHDWCEAFSTYP-------RTYDLLH 248 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~----~v-~vmnv~p~d~~~~l~~a~eRGl-ig~~~d~~e~~~~yp-------~sFDlVh 248 (332)
...||=+|++.|+...+..+- ++ ..+...+....+.+..|..|-. +..+.| + .+| .-.|+|+
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED---A--rhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED---A--RHPAKYRMLVGMVDVIF 231 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc---C--CCchheeeeeeeEEEEe
Confidence 567999999999998888763 32 2223334444778888888854 445533 2 344 2345555
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+. +.++....-+.+-..-.||+||.|+|+-..
T Consensus 232 aD-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 232 AD-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred cc-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 54 443334445777888899999999998743
No 272
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.82 E-value=23 Score=33.28 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=50.0
Q ss_pred CCeEEEecCc-chHHHHHHhcC-CCeEEEEeecCchhhHHHHHhcCcccccccccccCC-CCCCccceeEehhhhccccc
Q 020011 182 IRNVMDMNTL-YGGFAAAVIDD-PLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFS-TYPRTYDLLHLDGLFTAESH 258 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~~-~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~-~yp~sFDlVh~s~vf~h~~~ 258 (332)
..+||-.||| .|..+..+++. |..++.++.. ++.++.+.+.|....+..-.+.+. .-.+.+|++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~------- 233 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRS--PDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV------- 233 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-------
Confidence 4678888886 66665555554 6544333222 555666655553111110000000 0114688776431
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.-...+.++.|.|+++|.++...
T Consensus 234 --~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 --VSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --CcHHHHHHHHHhcccCCEEEEEC
Confidence 11357888899999999999754
No 273
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=68.53 E-value=16 Score=34.86 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=37.5
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccc--cccccccCCC--CCCccceeEeh
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGT--YHDWCEAFST--YPRTYDLLHLD 250 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~--~~d~~e~~~~--yp~sFDlVh~s 250 (332)
+|+|+-||.||+...|.+.|..+ +..+|. +..++.. ++..... ..|..+ +.. .+..+|+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~--v~a~e~~~~a~~~~-~~N~~~~~~~~Di~~-~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEI--VAANEIDKSAAETY-EANFPNKLIEGDITK-IDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEE--EEEEeCCHHHHHHH-HHhCCCCCccCcccc-CchhhcCCCCCEEEeC
Confidence 69999999999999998888643 455666 4444333 3322111 112111 111 13469999986
No 274
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=68.46 E-value=39 Score=34.26 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCC--eE-EEEeecCc----hhhHHHHHhcC----ccccccccccc--C-----C
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPL--WV-MNVVSSYA----ANTLAVVYDRG----LIGTYHDWCEA--F-----S 238 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v--~v-mnv~p~d~----~~~l~~a~eRG----lig~~~d~~e~--~-----~ 238 (332)
++-.....||||.|..||=.+.|.+.-- +. -.|+.-|. .++|.-...|- +...-|+.... . .
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 3334478899999999998877766311 00 02344444 44454444442 12222321100 0 1
Q ss_pred CCC-CccceeEeh------hhhccccc---c-------CCH----HHHHHHHHhhhcCCcEEEEEcCh-------hH-HH
Q 020011 239 TYP-RTYDLLHLD------GLFTAESH---R-------CDM----KFVLLEMDRILRPNGYVIVRESS-------YF-ID 289 (332)
Q Consensus 239 ~yp-~sFDlVh~s------~vf~h~~~---~-------c~~----~~iL~EmdRVLRPGG~lii~d~~-------~~-~~ 289 (332)
.+. -.||=|.|. ..+.+-++ . -++ ..+|.---|.|||||.++.+.-. .+ -.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~ 310 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQE 310 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHH
Confidence 233 568888773 12222110 0 001 13777788999999999998832 22 33
Q ss_pred HHHHHHhcCcceeeec
Q 020011 290 AVATIAKGMKWSCHKE 305 (332)
Q Consensus 290 ~i~~i~~~l~W~~~~~ 305 (332)
.++.+...+.|.....
T Consensus 311 ~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 311 ALQKVGGAVELVDVSG 326 (375)
T ss_pred HHHHhcCcccceeecc
Confidence 4455566777765544
No 275
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.46 E-value=19 Score=38.46 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=29.4
Q ss_pred CccceeEehhhhccccccCCH-HHHHHHHHhhhcCCcEEEEEcChh
Q 020011 242 RTYDLLHLDGLFTAESHRCDM-KFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~~~~c~~-~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
..||+++... |+=-.++... ++++.+|.|+++|||.|+.-....
T Consensus 165 ~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~ 209 (662)
T PRK01747 165 ARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATFTSAG 209 (662)
T ss_pred ccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEeehHH
Confidence 4588887763 3321111111 479999999999999999776554
No 276
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=68.31 E-value=17 Score=34.50 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=67.9
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHH----HHhcCc--cccc--------ccccccCC--CCC-Cc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAV----VYDRGL--IGTY--------HDWCEAFS--TYP-RT 243 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~----a~eRGl--ig~~--------~d~~e~~~--~yp-~s 243 (332)
.++.|+.+|||+=+.+-.|.... .+.+..+|.++++++ ..+.|. ...+ .+|.+.+. .|. ..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 36789999999999998885442 135677888777653 222121 1111 34544322 243 45
Q ss_pred cceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 244 YDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 244 FDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
-=++.+-.|+.|++. ..+..+|..+.+..-||+.+++.-
T Consensus 159 ptl~i~EGvl~YL~~-~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 159 PTAWLWEGLLMYLTE-EAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred CeeeeecchhhcCCH-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 568889999999974 567889999999888999998864
No 277
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=68.28 E-value=36 Score=34.63 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=63.5
Q ss_pred CCeEEEecCcchHHH--HHHhcCCCe-----------------------------------EE-EEeecCc-hhhHHHHH
Q 020011 182 IRNVMDMNTLYGGFA--AAVIDDPLW-----------------------------------VM-NVVSSYA-ANTLAVVY 222 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfa--a~L~~~~v~-----------------------------------vm-nv~p~d~-~~~l~~a~ 222 (332)
...++|==||.|+|+ |+|...++- -. -+.++|. +.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 468999999999988 555543210 00 1457888 88888777
Q ss_pred hc----Cccccc---ccccccCCCCCCccceeEehhhh-ccccccCCHH----HHHHHHHhhhcCCcEEEEEcChhHHHH
Q 020011 223 DR----GLIGTY---HDWCEAFSTYPRTYDLLHLDGLF-TAESHRCDMK----FVLLEMDRILRPNGYVIVRESSYFIDA 290 (332)
Q Consensus 223 eR----Glig~~---~d~~e~~~~yp~sFDlVh~s~vf-~h~~~~c~~~----~iL~EmdRVLRPGG~lii~d~~~~~~~ 290 (332)
.. |+...+ .--...+.+....||+|+|+-=- .-+.+...+. .+..+|.|.++--+.+|++.+.+....
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~~~ 351 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSEDLLFC 351 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHHHHHH
Confidence 65 432211 10001122111799999998110 0122222233 366677788888888999888775444
No 278
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=67.93 E-value=37 Score=35.93 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=38.3
Q ss_pred ccccccccchhhHHHHHHHHHh-hcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHh
Q 020011 151 GSASAFKHDDSKWNVRVKHYKK-LLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYD 223 (332)
Q Consensus 151 ~~~~~F~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~e 223 (332)
.|+..|-.-++.=-..+-.|.. .. .++. ...+||+-||+|.|+-+|+.+-. .|.|+.. +++++.|..
T Consensus 355 iSp~AFFQ~Nt~~aevLys~i~e~~-~l~~--~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 355 ISPGAFFQTNTSAAEVLYSTIGEWA-GLPA--DKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEK 423 (534)
T ss_pred ECCchhhccCcHHHHHHHHHHHHHh-CCCC--CcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhh
Confidence 3555554444433333333332 11 2333 36799999999999999988633 2445555 555555443
No 279
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=67.63 E-value=41 Score=31.44 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=46.1
Q ss_pred eEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCc-cccccccccc-CCCCCCccceeEeh---hhhcccc
Q 020011 184 NVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGL-IGTYHDWCEA-FSTYPRTYDLLHLD---GLFTAES 257 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGl-ig~~~d~~e~-~~~yp~sFDlVh~s---~vf~h~~ 257 (332)
+|+|+=||.|||...|.+.|..+ +..+|. ++.. ..+++.. .....|..+. ...+|..+|+++++ .-||...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~--~~a~e~~~~a~-~~y~~N~~~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEV--VWAVEIDPDAC-ETYKANFPEVICGDITEIDPSDLPKDVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEE--EEEEESSHHHH-HHHHHHHTEEEESHGGGCHHHHHHHT-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEE--EEEeecCHHHH-HhhhhcccccccccccccccccccccceEEEeccCCceEeccc
Confidence 68999999999999999998533 334444 3322 2222211 2222222111 11244358888875 3344321
Q ss_pred -------ccCCHHHHHHHHHhhhcCCcEE
Q 020011 258 -------HRCDMKFVLLEMDRILRPNGYV 279 (332)
Q Consensus 258 -------~~c~~~~iL~EmdRVLRPGG~l 279 (332)
++..+-.-+.++-..+||-=+|
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~ 107 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPKYFL 107 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-SEEE
T ss_pred cccccccccchhhHHHHHHHhhccceEEE
Confidence 1222334555556667895433
No 280
>PHA01634 hypothetical protein
Probab=67.58 E-value=9.3 Score=33.64 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCC-eEEEEee
Q 020011 159 DDSKWNVRVKHYKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPL-WVMNVVS 211 (332)
Q Consensus 159 d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v-~vmnv~p 211 (332)
+...|+.-..+|..+- + ..++|+|+|++.|.-+.+++-+|. .|+.+.|
T Consensus 11 ~c~ywrey~~~Y~~id--v---k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~ 59 (156)
T PHA01634 11 ECDYWREYPHAYGMLN--V---YQRTIQIVGADCGSSALYFLLRGASFVVQYEK 59 (156)
T ss_pred cchHHHHHHHHhhhee--e---cCCEEEEecCCccchhhHHhhcCccEEEEecc
Confidence 5567888877776321 2 357899999999999999888876 3444444
No 281
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=67.33 E-value=32 Score=33.12 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=51.0
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccccc-cC--CCCCCccceeEehhhhcc
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCE-AF--STYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e-~~--~~yp~sFDlVh~s~vf~h 255 (332)
..+||=+|||. |.+++.+++ .+..++.+...+. ++.++++.+.|.... +..+ .+ ....+.||+|+-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~----- 245 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEA----- 245 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEEC-----
Confidence 45788888864 345555544 4654443443332 566777777665311 1101 00 0011457766654
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. -...+.+..++|||||.+++..
T Consensus 246 ~g----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 246 TG----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred cC----CHHHHHHHHHHccCCcEEEEEe
Confidence 11 1247889999999999998754
No 282
>PRK10742 putative methyltransferase; Provisional
Probab=67.28 E-value=33 Score=32.90 Aligned_cols=89 Identities=19% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc----hhhHHHHHhcC-------c-----cccccccccc-CCC
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA----ANTLAVVYDRG-------L-----IGTYHDWCEA-FST 239 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~----~~~l~~a~eRG-------l-----ig~~~d~~e~-~~~ 239 (332)
++.+..-+|||.=||.|..+--++.+|.-| +.++. ...++-..+|. . +-.+|.-+.. +..
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~~V---~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCCEE---EEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 455444489999999999999999998743 33333 22233233321 0 1111111111 222
Q ss_pred CCCccceeEehhhhccccccCCHHHHHHHHHh
Q 020011 240 YPRTYDLLHLDGLFTAESHRCDMKFVLLEMDR 271 (332)
Q Consensus 240 yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdR 271 (332)
.+.+||+|...=.|.|-.. -..+..||.-
T Consensus 161 ~~~~fDVVYlDPMfp~~~k---sa~vkk~mr~ 189 (250)
T PRK10742 161 ITPRPQVVYLDPMFPHKQK---SALVKKEMRV 189 (250)
T ss_pred CCCCCcEEEECCCCCCCcc---ccchhhhHHH
Confidence 4468999999988877332 1235556543
No 283
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=66.85 E-value=2 Score=40.60 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=17.8
Q ss_pred EEEeeceecCCceEEeccCCc
Q 020011 12 LLEVHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ppv 32 (332)
+-|+.|+|+|||+||...|..
T Consensus 164 ~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 164 AEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred HHHHHhhccCCCEEEEEeCCC
Confidence 357999999999999987753
No 284
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=66.12 E-value=12 Score=35.12 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=51.9
Q ss_pred CeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc-Ccccccccc---cccCCCCC-CccceeEehhhhccc
Q 020011 183 RNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR-GLIGTYHDW---CEAFSTYP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR-Glig~~~d~---~e~~~~yp-~sFDlVh~s~vf~h~ 256 (332)
..+-|+|+|+|-++..-++..--|+ .+.. +.....|.+. .+.|.. .| -+..++|. ..-|+|.|-.+=..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rVi---AiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~fe~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVI---AIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDFENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEE---EEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccccccceeHHHHhhHHh
Confidence 4689999999976543333221222 2333 3344444443 123321 12 12356788 888999998655544
Q ss_pred cccCCHHHHHHHHHhhhcCCcEEEE
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~lii 281 (332)
.+ +....+|.-+-..||-.|.+|=
T Consensus 110 i~-E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IE-EKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hc-ccccHHHHHHHHHhhcCCcccc
Confidence 32 2233455555557788887763
No 285
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.62 E-value=0.79 Score=43.83 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCe------EE--EEeecCchhhHHHHHhcCcccccccccc-----c-CCCCC-Cccce
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLW------VM--NVVSSYAANTLAVVYDRGLIGTYHDWCE-----A-FSTYP-RTYDL 246 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~------vm--nv~p~d~~~~l~~a~eRGlig~~~d~~e-----~-~~~yp-~sFDl 246 (332)
+++|.|+.+..|+....|.++=.- .- -|+.+|...|.++ +|++-...|... . +.-|- .--|+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAdl 118 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKADL 118 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence 788999999999999888653100 00 0333333222211 222111111111 0 12355 46788
Q ss_pred eEehhhh---------ccccccCCHHHHHHHHHhhhcCCcEEEE---Ec--ChhHHHHHHHHHhcC
Q 020011 247 LHLDGLF---------TAESHRCDMKFVLLEMDRILRPNGYVIV---RE--SSYFIDAVATIAKGM 298 (332)
Q Consensus 247 Vh~s~vf---------~h~~~~c~~~~iL~EmdRVLRPGG~lii---~d--~~~~~~~i~~i~~~l 298 (332)
|.|...= ++++ ...+..+|.=..+||||||.|+- |. ..-.-..++.+.+++
T Consensus 119 VvcDGAPDvTGlHd~DEy~Q-~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 119 VVCDGAPDVTGLHDLDEYVQ-AQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred EEeCCCCCccccccHHHHHH-HHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhce
Confidence 8886431 2222 12344577778899999999985 22 223344556655544
No 286
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=65.38 E-value=1.9 Score=37.53 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=14.0
Q ss_pred EEEeeceecCCceEEe
Q 020011 12 LLEVHRILRPGGFWVL 27 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~ 27 (332)
|-|+-|+|+|||+++.
T Consensus 64 l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 64 MKEMYRVLKPGSRVSI 79 (160)
T ss_pred HHHHHHHcCcCeEEEE
Confidence 5589999999999984
No 287
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=62.86 E-value=26 Score=31.38 Aligned_cols=37 Identities=22% Similarity=0.078 Sum_probs=25.3
Q ss_pred CCCC--CCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 237 FSTY--PRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 237 ~~~y--p~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
..++ +++.|++.|.+.. . +.....-|||||++++...
T Consensus 59 ~~~~~~~~~~D~lva~d~~----------~-~~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 59 SSPLIPEGQADLLLALEPA----------E-VARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CCCccCCCCCCEEEEcCHH----------H-HHHHHhhcCCCcEEEEECC
Confidence 3455 3899999998322 2 2344456999999998863
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=62.53 E-value=8.8 Score=31.14 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=51.8
Q ss_pred cchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCccccccc----ccccC-CCCC-CccceeEehhhhccccccCCH
Q 020011 191 LYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIGTYHD----WCEAF-STYP-RTYDLLHLDGLFTAESHRCDM 262 (332)
Q Consensus 191 G~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d----~~e~~-~~yp-~sFDlVh~s~vf~h~~~~c~~ 262 (332)
|.|.++..|++. |. +|..++. +..++.+.+-|....+.. +.+.. ..++ +.+|+|+=. . ..
T Consensus 1 ~vG~~a~q~ak~~G~---~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~----g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA---KVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----V----GS 68 (130)
T ss_dssp HHHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----S----SS
T ss_pred ChHHHHHHHHHHcCC---EEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEe-----c----Cc
Confidence 567777777664 54 4555555 667888888774222211 11111 1244 578877543 1 12
Q ss_pred HHHHHHHHhhhcCCcEEEEEcCh
Q 020011 263 KFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 263 ~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
...+.+.-.+|||||.+++-.-.
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHHHhccCCEEEEEEcc
Confidence 57999999999999999997644
No 289
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=62.32 E-value=44 Score=29.72 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=51.4
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCccccccc----ccccCCCCC-CccceeEehhhh
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHD----WCEAFSTYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d----~~e~~~~yp-~sFDlVh~s~vf 253 (332)
..+||..|+|. |..++.+++ .+..+ ..++. ++..+.+.+.|....+.. ..+...... +.||++....
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 209 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARV---IVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV-- 209 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeE---EEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC--
Confidence 56899999985 655555554 35433 33333 455566655553211110 000000112 6789887541
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
. -...+..+.+.|+++|.++.....
T Consensus 210 ---~----~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 210 ---G----GPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ---C----CHHHHHHHHHhcccCCEEEEEccC
Confidence 1 114677788999999999986643
No 290
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=62.08 E-value=22 Score=35.24 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhH--HHHHhcCccccccc------ccccCC---CCC-Cccce
Q 020011 180 DKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTL--AVVYDRGLIGTYHD------WCEAFS---TYP-RTYDL 246 (332)
Q Consensus 180 ~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l--~~a~eRGlig~~~d------~~e~~~---~yp-~sFDl 246 (332)
.+.++||=+|-|-|++.+.-+.... +-|+.-.+. .+-+ ..++-+.+.+.|.+ .+..|. -++ ++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~-ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKS-VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecccc-ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 3578899999999999887777632 224433333 2222 23333332111100 112222 365 99999
Q ss_pred eEehhhhccccccCCH--HHHHHHHHhhhcCCcEEEEEcCh-----hHHHHHHHH
Q 020011 247 LHLDGLFTAESHRCDM--KFVLLEMDRILRPNGYVIVRESS-----YFIDAVATI 294 (332)
Q Consensus 247 Vh~s~vf~h~~~~c~~--~~iL~EmdRVLRPGG~lii~d~~-----~~~~~i~~i 294 (332)
|.....= -+.+.|.. ..+..-|.+-|||||++++.... +++.++++.
T Consensus 199 ii~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~ 252 (337)
T KOG1562|consen 199 IITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSF 252 (337)
T ss_pred EEEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHh
Confidence 9986211 11112222 24888899999999999998743 344444444
No 291
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.89 E-value=32 Score=32.27 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=49.1
Q ss_pred CCeEEEecCc-chHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCccccccccccc-C---CCCC-CccceeEehhhh
Q 020011 182 IRNVMDMNTL-YGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEA-F---STYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~-~---~~yp-~sFDlVh~s~vf 253 (332)
..+||-.|+| .|..++.+++ .|..+ +.-++. ++..+++.+.|..-.+.. .+. + ...+ +.+|++....
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~vd~v~~~~-- 234 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASR--VTVAEPNEEKLELAKKLGATETVDP-SREDPEAQKEDNPYGFDVVIEAT-- 234 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCeEEecC-CCCCHHHHHHhcCCCCcEEEECC--
Confidence 4688888865 2444444444 35432 222222 555666666664211110 000 0 0113 6788887541
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. -...+.++.|.|+|+|.++...
T Consensus 235 ---~----~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 235 ---G----VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ---C----ChHHHHHHHHHHhcCCEEEEEe
Confidence 0 1358889999999999998753
No 292
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=61.52 E-value=17 Score=33.83 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=39.0
Q ss_pred EEEeeceecCCceEEeccCCccccccccC-CC-CCHHHHH--------HHHHHHHHHHHhcccceeeeec-----ceEEE
Q 020011 12 LLEVHRILRPGGFWVLSGPPVNYEHRWRG-WN-TTIEEQR--------SDYKKLQDLLTSMCFKLYAKKD-----DIAVW 76 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ppv~~~~~~~~-~~-~~~~~~~--------~~~~~~~~l~~~~cw~~~~~~~-----~~aiw 76 (332)
+-++-|+|+|||.+++-||=. +...+.. -+ +=.+.|+ .+.++++++|.+-..++..... .+.||
T Consensus 124 f~~a~~~L~~gG~L~~YGPF~-~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvf 202 (204)
T PF06080_consen 124 FAGAARLLKPGGLLFLYGPFN-RDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLVF 202 (204)
T ss_pred HHHHHHhCCCCCEEEEeCCcc-cCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEEE
Confidence 346679999999999999922 2221111 00 0001111 1245688899998888776543 26777
Q ss_pred ee
Q 020011 77 QK 78 (332)
Q Consensus 77 ~K 78 (332)
+|
T Consensus 203 rk 204 (204)
T PF06080_consen 203 RK 204 (204)
T ss_pred eC
Confidence 76
No 293
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=60.01 E-value=18 Score=35.68 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=53.4
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhcccccc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHR 259 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~ 259 (332)
...++|.=-|.||-+.++.++ +- ..|.++|. +++++.+.+| +..|.+.|-++|++ |+
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~--~~li~~DrD~~a~~~a~~~------------l~~~~~r~~~~~~~--F~----- 79 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPN--GRLIGIDRDPEALERAKER------------LKKFDDRFIFIHGN--FS----- 79 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT---EEEEEES-HHHHHHHHCC------------TCCCCTTEEEEES---GG-----
T ss_pred CceEEeecCCcHHHHHHHHHhCCC--CeEEEecCCHHHHHHHHHH------------HhhccceEEEEecc--HH-----
Confidence 457999999999999999876 32 36889999 8899888754 34567889999988 33
Q ss_pred CCHHHHHHHHHhhhcCCcEEE
Q 020011 260 CDMKFVLLEMDRILRPNGYVI 280 (332)
Q Consensus 260 c~~~~iL~EmdRVLRPGG~li 280 (332)
++..++.+...+=+..|+|+
T Consensus 80 -~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 80 -NLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp -GHHHHHHHTTTTS-EEEEEE
T ss_pred -HHHHHHHHccCCCccCEEEE
Confidence 34566666644456666665
No 294
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.25 E-value=53 Score=31.94 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.2
Q ss_pred EEEecCcchHHHHHHhcCCCeE
Q 020011 185 VMDMNTLYGGFAAAVIDDPLWV 206 (332)
Q Consensus 185 VLD~GCG~Ggfaa~L~~~~v~v 206 (332)
|+|+=||-||+...|.+.|.-+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~ 22 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKC 22 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeE
Confidence 6899999999999999888643
No 295
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=57.93 E-value=27 Score=34.36 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
...++|.=+|.||-+.+|++.--- ..|.++|. +.++..+.++
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 457999999999999999875111 25789999 8899888765
No 296
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=57.89 E-value=2.5 Score=39.62 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=14.5
Q ss_pred EEEEeeceecCCceEEe
Q 020011 11 YLLEVHRILRPGGFWVL 27 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~ 27 (332)
.|-|+-|||||||.++.
T Consensus 135 ~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 135 ALREMYRVLKPGGRLVI 151 (233)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 35688999999999886
No 297
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=57.26 E-value=39 Score=31.99 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=50.1
Q ss_pred EEEecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccCC
Q 020011 185 VMDMNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 185 VLD~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~ 261 (332)
|.=+|+|. |+++.+|.+.+. .|..+|. ++.++.+.++|.+....+ .. ..-...|+|... ++. ..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~---~V~~~d~~~~~~~~a~~~g~~~~~~~---~~-~~~~~aDlVila-----vp~-~~ 69 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGH---TVYGVSRRESTCERAIERGLVDEAST---DL-SLLKDCDLVILA-----LPI-GL 69 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHCCCcccccC---CH-hHhcCCCEEEEc-----CCH-HH
Confidence 44467775 568888888876 4556666 667778888876432211 00 011567887776 221 23
Q ss_pred HHHHHHHHHhhhcCCcEE
Q 020011 262 MKFVLLEMDRILRPNGYV 279 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~l 279 (332)
...++.++...++|+-.+
T Consensus 70 ~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHhCCCCcEE
Confidence 456788888888877433
No 298
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=57.09 E-value=3.5 Score=36.83 Aligned_cols=102 Identities=12% Similarity=0.186 Sum_probs=49.2
Q ss_pred eEEEecCcchHHHHHHhc----CCCeEEEEeecCchhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccc-
Q 020011 184 NVMDMNTLYGGFAAAVID----DPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESH- 258 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~L~~----~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~- 258 (332)
-||++|=|.|.+=-+|.+ +.++|++-+-...++..+-. ++-+.|.+.+--.+...|...--++|+..-..+-..
T Consensus 31 ~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~-~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~d 109 (160)
T PF12692_consen 31 PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPE-EDLILGDIRETLPALARFGAGAALAHADIGTGDKEKD 109 (160)
T ss_dssp -EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---G-GGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHHH
T ss_pred ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCch-HheeeccHHHHhHHHHhcCCceEEEEeecCCCCcchh
Confidence 499999999988888876 45677653211113222222 333455444322221224477788999865544211
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
.....++--=|..+|.|||+++-..+.+
T Consensus 110 ~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 110 DATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred HHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 0111235556789999999998888765
No 299
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=56.80 E-value=18 Score=34.78 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=65.4
Q ss_pred HHhhcCCCCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc-Ccccccc--cccccCCCCC-Ccc
Q 020011 170 YKKLLPALGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR-GLIGTYH--DWCEAFSTYP-RTY 244 (332)
Q Consensus 170 y~~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR-Glig~~~--d~~e~~~~yp-~sF 244 (332)
|..++..++. ..+|||+|||.=-|+.......--+ ...++|. ...++++..- ...+.-+ .+++-+..-| .+.
T Consensus 96 Y~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~ 172 (251)
T PF07091_consen 96 YDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPA 172 (251)
T ss_dssp HHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEE
T ss_pred HHHHHhcCCC--CchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCc
Confidence 4444443333 7899999999999998777653211 4567777 5555544322 1121111 1123333334 889
Q ss_pred ceeEehhhhccccc-cCCH-HHHHHHHHhhhcCCcEEEEEcChh------------HHHHHHHHHhcCcceeeec
Q 020011 245 DLLHLDGLFTAESH-RCDM-KFVLLEMDRILRPNGYVIVRESSY------------FIDAVATIAKGMKWSCHKE 305 (332)
Q Consensus 245 DlVh~s~vf~h~~~-~c~~-~~iL~EmdRVLRPGG~lii~d~~~------------~~~~i~~i~~~l~W~~~~~ 305 (332)
||.+.--+++-+.. +-.. -.+|.+++ .=.++++-|.. .-..++..+..=-|.+...
T Consensus 173 DlaLllK~lp~le~q~~g~g~~ll~~~~-----~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 173 DLALLLKTLPCLERQRRGAGLELLDALR-----SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp SEEEEET-HHHHHHHSTTHHHHHHHHSC-----ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHhC-----CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 99988766654321 1111 12344332 23566665442 3456777777777775443
No 300
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=56.39 E-value=26 Score=29.83 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=43.8
Q ss_pred CccceeEehhhhccccccCCH-HHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeecccccccccceEEEEE
Q 020011 242 RTYDLLHLDGLFTAESHRCDM-KFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKEDTEYGVEKEKLLLCQ 320 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~~~~c~~-~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~~~e~~~~~e~~li~~ 320 (332)
..||+|+-.. |+--.++... .+++.++.|+++|||.+..-..... |+.-+...-.++.... .-+.+..++++.
T Consensus 49 ~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~---Vr~~L~~aGF~v~~~~--g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 49 ARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGA---VRRALQQAGFEVEKVP--GFGRKREMLRAV 122 (124)
T ss_dssp T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHH---HHHHHHHCTEEEEEEE---STTSSEEEEEE
T ss_pred ccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHH---HHHHHHHcCCEEEEcC--CCCCcchheEEE
Confidence 5677666553 4322211111 4799999999999999998766653 5555666666665432 112567788888
Q ss_pred ec
Q 020011 321 KK 322 (332)
Q Consensus 321 K~ 322 (332)
|+
T Consensus 123 ~~ 124 (124)
T PF05430_consen 123 KP 124 (124)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 301
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=56.06 E-value=7.5 Score=34.90 Aligned_cols=63 Identities=11% Similarity=0.284 Sum_probs=32.5
Q ss_pred EEEEeeceecCCceEE-eccC-Ccccccc-ccCCCCCHHHHHHHHHHHHHHHHhcccceeeeecceEEEeecCCC
Q 020011 11 YLLEVHRILRPGGFWV-LSGP-PVNYEHR-WRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDIAVWQKLSDS 82 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v-~s~p-pv~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~~~~aiw~Kp~~~ 82 (332)
++-++.|+|+|||+++ .... +..+..+ -..+.-+++ +|.++.+. |+.+.-...+..|.|...+
T Consensus 115 ~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~-------el~~~f~~--~~~~~~~e~~~~~~~~~~~ 180 (195)
T TIGR00477 115 IIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKED-------ELRQYYAD--WELLKYNEAVGELHATDAN 180 (195)
T ss_pred HHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHH-------HHHHHhCC--CeEEEeecccccccccccC
Confidence 3447789999999854 3110 0000000 001223333 34444444 8888777667777776543
No 302
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=55.88 E-value=55 Score=29.08 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=54.3
Q ss_pred ecCcchHHHHHHhcC-C-CeEEEEeecCchh-----------hHHHHHhcCcccccccccccCCC-C--C-CccceeEeh
Q 020011 188 MNTLYGGFAAAVIDD-P-LWVMNVVSSYAAN-----------TLAVVYDRGLIGTYHDWCEAFST-Y--P-RTYDLLHLD 250 (332)
Q Consensus 188 ~GCG~Ggfaa~L~~~-~-v~vmnv~p~d~~~-----------~l~~a~eRGlig~~~d~~e~~~~-y--p-~sFDlVh~s 250 (332)
+|=|-=+|+.+|++. + ...+-.+..|..+ .++...++|....+..-++.+.. + . +.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 444555888999875 2 1112223444322 23344445543332222333332 3 4 889999876
Q ss_pred hhhcccc-----ccC-------CHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 251 GLFTAES-----HRC-------DMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 251 ~vf~h~~-----~~c-------~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
|-|.. ..+ .+..++.-..++|+|+|.+.|+-.
T Consensus 83 --FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 83 --FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred --CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 56654 112 334688899999999999999763
No 303
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=55.75 E-value=1e+02 Score=30.19 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=25.3
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA 214 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~ 214 (332)
..+++|+=||-|||...|...|..+.-...+|.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~ 35 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP 35 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCH
Confidence 357999999999999999998865544444444
No 304
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=54.28 E-value=3.9 Score=38.58 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.3
Q ss_pred EEEEeeceecCCceEEec
Q 020011 11 YLLEVHRILRPGGFWVLS 28 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s 28 (332)
+|-|+-|+|+|||+++.+
T Consensus 164 ~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 164 AMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred HHHHHHHHcCcCcEEEEE
Confidence 356899999999999875
No 305
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=53.62 E-value=1.6 Score=40.40 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.2
Q ss_pred ccccCcEEEEEeeceecCCceEEeccCC
Q 020011 4 IFVSGGIYLLEVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 4 w~~~~g~~l~E~dRvLRpgGy~v~s~pp 31 (332)
|..+-..+|-|+.|+|+|||++++|.+.
T Consensus 115 ~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 115 WCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 3333345577899999999999998764
No 306
>PTZ00146 fibrillarin; Provisional
Probab=53.53 E-value=4.5 Score=39.60 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=15.9
Q ss_pred EEEEEeeceecCCceEEec
Q 020011 10 IYLLEVHRILRPGGFWVLS 28 (332)
Q Consensus 10 ~~l~E~dRvLRpgGy~v~s 28 (332)
++++|+.|+|+|||+|+++
T Consensus 218 il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 218 IVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred HHHHHHHHhccCCCEEEEE
Confidence 3456899999999999984
No 307
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=52.07 E-value=28 Score=32.76 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=59.5
Q ss_pred HHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccCCHHHHHHHHHhhh
Q 020011 195 FAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRIL 273 (332)
Q Consensus 195 faa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVL 273 (332)
||.+|.+.+.- ..|.+.|. +.++..+.+.|++-...+--+.+ ..+|+|.-+-=+ ..+..++.|+...|
T Consensus 1 ~A~aL~~~g~~-~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP~------~~~~~~l~~~~~~~ 69 (258)
T PF02153_consen 1 IALALRKAGPD-VEVYGYDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVPV------SAIEDVLEEIAPYL 69 (258)
T ss_dssp HHHHHHHTTTT-SEEEEE-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-H------HHHHHHHHHHHCGS
T ss_pred ChHHHHhCCCC-eEEEEEeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCCH------HHHHHHHHHhhhhc
Confidence 68899998731 26788998 88999999988875432100111 556998877222 23567999999999
Q ss_pred cCCcEEEEEc--ChhHHHHHHHHHh-cCcc
Q 020011 274 RPNGYVIVRE--SSYFIDAVATIAK-GMKW 300 (332)
Q Consensus 274 RPGG~lii~d--~~~~~~~i~~i~~-~l~W 300 (332)
+||+.+.=.. ...++..+++... ..++
T Consensus 70 ~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~ 99 (258)
T PF02153_consen 70 KPGAIVTDVGSVKAPIVEAMERLLPEGVRF 99 (258)
T ss_dssp -TTSEEEE--S-CHHHHHHHHHHHTSSGEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHhcCcccce
Confidence 9987776433 3356677777665 4444
No 308
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=52.00 E-value=41 Score=31.80 Aligned_cols=91 Identities=14% Similarity=0.016 Sum_probs=51.0
Q ss_pred CCeEEEecCcc-hHHHHHHhcC-CCeEEEEeecCchhhHHHHHhcCcccc--cc--cccccCCC-CC-CccceeEehhhh
Q 020011 182 IRNVMDMNTLY-GGFAAAVIDD-PLWVMNVVSSYAANTLAVVYDRGLIGT--YH--DWCEAFST-YP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~~-~v~vmnv~p~d~~~~l~~a~eRGlig~--~~--d~~e~~~~-yp-~sFDlVh~s~vf 253 (332)
..+||-.|+|. |.+++.|++. |..++.++.. ++..+++.+.|..-. ++ ++.+.+.. .+ +.+|++...-
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s--~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~-- 235 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDID--DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDAT-- 235 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECC--
Confidence 45788888763 5566666654 6544333222 455556655553111 11 11122222 23 5688876531
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. -...+.++.+.|+++|.++...
T Consensus 236 ---g----~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 236 ---G----NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ---C----CHHHHHHHHHHHhcCCEEEEEc
Confidence 0 1357899999999999998653
No 309
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=51.85 E-value=10 Score=32.15 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCC
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPL 204 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v 204 (332)
....-.|+|||.|-+.--|.+.|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy 81 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY 81 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC
Confidence 345689999999988877777765
No 310
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=51.12 E-value=37 Score=31.73 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeee
Q 020011 262 MKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHK 304 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~ 304 (332)
....+.|+.|+|+++|.+.+.........+..+++.+.|....
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~~ 120 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEILG 120 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEee
Confidence 4568999999999999999999987777777777777776553
No 311
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=50.77 E-value=42 Score=32.50 Aligned_cols=110 Identities=20% Similarity=0.140 Sum_probs=73.8
Q ss_pred CeEEEecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC-CccceeEehhhhccccc
Q 020011 183 RNVMDMNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESH 258 (332)
Q Consensus 183 r~VLD~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~ 258 (332)
.+|.=+|.|. |.|+.+|.+++. ...+.+.|. .+++..+.+.|++-.+. +....-. ...|+|+-+ +|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~---~~~~~~~~~~aD~Viva-----vP- 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELT---VAGLAEAAAEADLVIVA-----VP- 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCcccccc---cchhhhhcccCCEEEEe-----cc-
Confidence 3455566553 568888888885 457899999 88888898888764331 1111123 779999887 22
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEE--EcChhHHHHHHHHHhcCcceee
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIV--RESSYFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii--~d~~~~~~~i~~i~~~l~W~~~ 303 (332)
-.....++.|+..-|+||-.+.= +....+++.+++...... .+.
T Consensus 74 i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v 119 (279)
T COG0287 74 IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV 119 (279)
T ss_pred HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE
Confidence 23456799999999999877652 224466777777776655 444
No 312
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=49.76 E-value=3.9 Score=38.66 Aligned_cols=16 Identities=56% Similarity=0.951 Sum_probs=14.0
Q ss_pred EEEeeceecCCceEEe
Q 020011 12 LLEVHRILRPGGFWVL 27 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~ 27 (332)
|-|+-|||||||-+++
T Consensus 165 L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 165 LNEVRRLLRPGGRIIF 180 (252)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 4588999999998887
No 313
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=49.34 E-value=1.2e+02 Score=30.04 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=63.8
Q ss_pred CCeEEEecCcchHHHHHHhcC-CCeEEEEeecCc-----hhhHHHHHhcCccc----ccccccccCCCCC---CccceeE
Q 020011 182 IRNVMDMNTLYGGFAAAVIDD-PLWVMNVVSSYA-----ANTLAVVYDRGLIG----TYHDWCEAFSTYP---RTYDLLH 248 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~-~v~vmnv~p~d~-----~~~l~~a~eRGlig----~~~d~~e~~~~yp---~sFDlVh 248 (332)
..+|+.-|.|.|++.-+++.. +-.. .+--+|. ...++--++.|+.. .+.|.|.+ .|+ ..+|.|+
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptG-hl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~--GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTG-HLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS--GFLIKSLKADAVF 182 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCc-ceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC--CccccccccceEE
Confidence 568999999999998887663 1111 2333343 33344444556422 34566764 343 7788776
Q ss_pred ehhhhccccccCCHHHHHHHHHhhhcCCc-EEEEEc-ChhHHHHHHHHHhcCcceee
Q 020011 249 LDGLFTAESHRCDMKFVLLEMDRILRPNG-YVIVRE-SSYFIDAVATIAKGMKWSCH 303 (332)
Q Consensus 249 ~s~vf~h~~~~c~~~~iL~EmdRVLRPGG-~lii~d-~~~~~~~i~~i~~~l~W~~~ 303 (332)
-. ++. +-.++==.+.+||-+| +|+-.. -.+.+++--+.+.++-|.-.
T Consensus 183 LD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 183 LD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred Ec-----CCC---hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceE
Confidence 65 332 2233444445888766 555433 34556666666778777543
No 314
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=48.60 E-value=47 Score=26.45 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=51.2
Q ss_pred CcchHHHHHHh----cCCCeEEEEeecCc-hhhHHHHHhcCccccccccccc--CCCCC-CccceeEehhhhccccccCC
Q 020011 190 TLYGGFAAAVI----DDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEA--FSTYP-RTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 190 CG~Ggfaa~L~----~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~--~~~yp-~sFDlVh~s~vf~h~~~~c~ 261 (332)
||+|.++..++ +.+. +++-+|. ++....+.++|....++|-.+. +..-. ...|.|.+. .++ ..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~---~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~-----~~~-d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGI---DVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVIL-----TDD-DE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEE-----SSS-HH
T ss_pred EcCCHHHHHHHHHHHhCCC---EEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEc-----cCC-HH
Confidence 67777665554 4342 4555666 6778888888876555543322 11123 666666655 221 12
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 262 MKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
..-.+...-|-|-|...++.+-...
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCH
Confidence 2335666778888988888877655
No 315
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=48.20 E-value=1.1e+02 Score=29.11 Aligned_cols=93 Identities=20% Similarity=0.066 Sum_probs=54.0
Q ss_pred CCeEEEecCcch--HHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccc
Q 020011 182 IRNVMDMNTLYG--GFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESH 258 (332)
Q Consensus 182 ~r~VLD~GCG~G--gfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~ 258 (332)
..+|.=+|+|.= .++.+|.+.+. ...|..++. ++.++.+.+.|+..... ......-...|+|+..- +.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~---~~~~~~~~~aDvViiav-----p~ 76 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVT---TSAAEAVKGADLVILCV-----PV 76 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceec---CCHHHHhcCCCEEEECC-----CH
Confidence 457888898873 46677777663 113445555 55677777766532211 11111115678887762 21
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
.....++.++...++||..++....
T Consensus 77 -~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 77 -GASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred -HHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 1235677888888899987665433
No 316
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=47.62 E-value=25 Score=34.12 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=30.2
Q ss_pred eeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 246 LLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 246 lVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.|....+|+|+++..+...++......|-||.+|+|+.
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 45566799999988899999999999999999999986
No 317
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=47.61 E-value=9.9 Score=37.11 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=15.7
Q ss_pred eeceecCCceEEeccCCc
Q 020011 15 VHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 15 ~dRvLRpgGy~v~s~ppv 32 (332)
+.++|+|||++|+||=-.
T Consensus 245 ~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 245 IASLLKPGGYLILSGILE 262 (295)
T ss_dssp CHHHEEEEEEEEEEEEEG
T ss_pred HHHhhCCCCEEEEccccH
Confidence 578899999999999854
No 318
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=47.58 E-value=21 Score=32.32 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=28.4
Q ss_pred EeeceecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeee
Q 020011 14 EVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAK 69 (332)
Q Consensus 14 E~dRvLRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~ 69 (332)
++-|+|||||++++.-++. . -.+++++++.+-|.+-+.
T Consensus 130 ~~~~~LkpGG~lv~~~~~~-~-----------------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 130 LCLPLLKPGGRFLALKGRD-P-----------------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred HHHHhcCCCeEEEEEeCCC-h-----------------HHHHHHHHHhcCceEeee
Confidence 5679999999999976542 1 235888999998876544
No 319
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.47 E-value=67 Score=33.88 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=59.1
Q ss_pred CCCeEEEecCcchHHHHHHh--cCCCeEEEEeecCc-hhhHHHHHhcCcccc-ccc-------------ccccC-----C
Q 020011 181 KIRNVMDMNTLYGGFAAAVI--DDPLWVMNVVSSYA-ANTLAVVYDRGLIGT-YHD-------------WCEAF-----S 238 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~--~~~v~vmnv~p~d~-~~~l~~a~eRGlig~-~~d-------------~~e~~-----~ 238 (332)
...+|+=+|||.=|+++... ..|. .|..+|. ++.++.+.+-|..-. +.. ..+.+ .
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 46789999999998776443 3465 3666777 778888877664211 100 00000 0
Q ss_pred CC-C--CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 239 TY-P--RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 239 ~y-p--~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.| + +.+|+|+....... +....-+..|+-+.+||||.++...
T Consensus 241 ~~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEc
Confidence 11 1 46999988743221 1112234699999999999988654
No 320
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=47.40 E-value=60 Score=31.24 Aligned_cols=89 Identities=15% Similarity=0.029 Sum_probs=48.0
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccc-------cccccCC--CCCCccc----
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYH-------DWCEAFS--TYPRTYD---- 245 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~-------d~~e~~~--~yp~sFD---- 245 (332)
..+||=+|||. |.+++.+++ .|.. |..++. ++.++++.+.|..-.+. ++.+... +-.+.+|
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~---vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAA---VVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 56899999854 444444444 4553 344444 66778887766421111 1111111 1113344
Q ss_pred eeE-ehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 246 LLH-LDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 246 lVh-~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+|. |. . -...+..+-+.||+||.+++..
T Consensus 244 ~v~d~~------g----~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 244 KIFECS------G----SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred EEEECC------C----ChHHHHHHHHHHhcCCeEEEEC
Confidence 333 22 1 1356777888999999999865
No 321
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=47.10 E-value=2.4 Score=39.81 Aligned_cols=55 Identities=25% Similarity=0.556 Sum_probs=34.8
Q ss_pred EEEEeeceecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeeeecc-----eEEEeecC
Q 020011 11 YLLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDD-----IAVWQKLS 80 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~~~-----~aiw~Kp~ 80 (332)
+|.|.+|||||||.+...----.. ++ -++..+..+++-.++..+... +..++|..
T Consensus 140 fi~EA~RvLK~~G~L~IAEV~SRf-----------~~----~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 140 FIREANRVLKPGGILKIAEVKSRF-----------EN----VKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEEGGG------------S-----HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred HHHHHHheeccCcEEEEEEecccC-----------cC----HHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 578999999999999774321111 01 234556677888888876542 56677776
No 322
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.96 E-value=2.6e+02 Score=26.57 Aligned_cols=133 Identities=9% Similarity=0.048 Sum_probs=82.6
Q ss_pred EEEecCcchHHHHHHhcCCC--eEEEEeecCc--hhhHHHHHhcCcccccc-cccccCCCCC--CccceeEehhhhcccc
Q 020011 185 VMDMNTLYGGFAAAVIDDPL--WVMNVVSSYA--ANTLAVVYDRGLIGTYH-DWCEAFSTYP--RTYDLLHLDGLFTAES 257 (332)
Q Consensus 185 VLD~GCG~Ggfaa~L~~~~v--~vmnv~p~d~--~~~l~~a~eRGlig~~~-d~~e~~~~yp--~sFDlVh~s~vf~h~~ 257 (332)
+.|+||=.|-+..+|.+.+. .++++.=+.. ...+......++.-... +....|.++. ..+|+|....+=
T Consensus 20 iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG---- 95 (226)
T COG2384 20 IADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG---- 95 (226)
T ss_pred eeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc----
Confidence 99999999999999999865 2323222222 33344344444432111 1123456665 589988776432
Q ss_pred ccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHHhcCcceeeecccccc-cccceEEEEEecc
Q 020011 258 HRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIAKGMKWSCHKEDTEYG-VEKEKLLLCQKKL 323 (332)
Q Consensus 258 ~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~~~l~W~~~~~~~e~~-~~~e~~li~~K~~ 323 (332)
.-.|..+|.|-...|+-==.+|+.-+.. ...+++-+....|+....-.-.+ .-=-.||++.|.-
T Consensus 96 -G~lI~~ILee~~~~l~~~~rlILQPn~~-~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~ 160 (226)
T COG2384 96 -GTLIREILEEGKEKLKGVERLILQPNIH-TYELREWLSANSYEIKAETILEEDGKIYEILVVEKSS 160 (226)
T ss_pred -HHHHHHHHHHhhhhhcCcceEEECCCCC-HHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCC
Confidence 2356789999998888655777765544 36788889999999876532211 1123478888873
No 323
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=46.91 E-value=4.4 Score=33.78 Aligned_cols=22 Identities=45% Similarity=0.981 Sum_probs=17.9
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 020011 11 YLLEVHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv 32 (332)
+|-++-|+|+|||+++++-|-.
T Consensus 97 ~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 97 FLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHhcCCCCEEEEEEcCC
Confidence 3456779999999999998754
No 324
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=46.53 E-value=7.4 Score=37.33 Aligned_cols=13 Identities=46% Similarity=1.129 Sum_probs=11.4
Q ss_pred ceecCCceEEecc
Q 020011 17 RILRPGGFWVLSG 29 (332)
Q Consensus 17 RvLRpgGy~v~s~ 29 (332)
++|||||+||+.|
T Consensus 187 ~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 187 SLLKPGGHLILAG 199 (256)
T ss_dssp TTEEEEEEEEEEE
T ss_pred HHcCCCcEEEEEE
Confidence 6899999999964
No 325
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=46.49 E-value=12 Score=33.60 Aligned_cols=62 Identities=13% Similarity=0.299 Sum_probs=31.6
Q ss_pred EEEEeeceecCCceEEe-ccCCc-ccccc-ccCCCCCHHHHHHHHHHHHHHHHhcccceeeeecceEEEeecCC
Q 020011 11 YLLEVHRILRPGGFWVL-SGPPV-NYEHR-WRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDIAVWQKLSD 81 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~-s~ppv-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~~~~aiw~Kp~~ 81 (332)
++-++-|+|+|||++++ ....- ....+ -.++.-.+++ +.++.+ =|+.+.-...+.++.|+..
T Consensus 116 ~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~e-------l~~~~~--~~~~~~~~~~~~~~~~~~~ 180 (197)
T PRK11207 116 LIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGE-------LRRYYE--GWEMVKYNEDVGELHRTDA 180 (197)
T ss_pred HHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHH-------HHHHhC--CCeEEEeeCCHHhhccccc
Confidence 34578899999999654 21100 00000 0012222332 333343 4887776666777776643
No 326
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=45.65 E-value=7.4 Score=35.21 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=18.8
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 020011 11 YLLEVHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv 32 (332)
+|-++.|+|+|||+|+++.+..
T Consensus 138 ~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 138 FLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred HHHHHHHHcCCCCEEEEEcCCH
Confidence 4678899999999999998754
No 327
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=45.64 E-value=51 Score=35.08 Aligned_cols=88 Identities=9% Similarity=0.128 Sum_probs=54.8
Q ss_pred CcchHHHHHHh----cCCCeEEEEeecCc-hhhHHHHHhcCccccccccccc--CCCCC-CccceeEehhhhccccccCC
Q 020011 190 TLYGGFAAAVI----DDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEA--FSTYP-RTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 190 CG~Ggfaa~L~----~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~--~~~yp-~sFDlVh~s~vf~h~~~~c~ 261 (332)
||+|.++..++ +.+. +++-+|. ++.++.+.+.|....+.|-++. +..-. +..|++.+. .++ .+
T Consensus 406 ~G~Gr~G~~va~~L~~~g~---~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~-----~~d-~~ 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKM---RITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT-----CNE-PE 476 (601)
T ss_pred ecCchHHHHHHHHHHhCCC---CEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----eCC-HH
Confidence 66776665554 4454 4555666 7788888888876666654332 11123 566666665 222 22
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 262 MKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
....+.++-|-+.|...++.|....
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 2346667788899999999887553
No 328
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=45.59 E-value=66 Score=31.62 Aligned_cols=89 Identities=18% Similarity=0.073 Sum_probs=54.4
Q ss_pred eEEEecCcchHHHHH-Hhc-CCCeEEEEeecCc-hhhHHHHHhcCccccc----c-cccccCCCCC--CccceeEehhhh
Q 020011 184 NVMDMNTLYGGFAAA-VID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTY----H-DWCEAFSTYP--RTYDLLHLDGLF 253 (332)
Q Consensus 184 ~VLD~GCG~Ggfaa~-L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~----~-d~~e~~~~yp--~sFDlVh~s~vf 253 (332)
+|+=+|||.=|+.+. +++ .|.- .|+-+|. ++.++.|.+.+-.... . +.-+...... +.||+++=.-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~--~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~-- 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGAS--VVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV-- 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC--
Confidence 899999998666543 333 2432 3455577 8899999885421111 1 0000111122 4688766431
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.....+..+-+++||||.+++..
T Consensus 247 -------G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 247 -------GSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred -------CCHHHHHHHHHHhcCCCEEEEEe
Confidence 13458999999999999999865
No 329
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=45.25 E-value=2.9e+02 Score=26.55 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=55.7
Q ss_pred CCeEEEecCcch-HHHHHHhcCCCeEEEEeecCc--hhhHH-HHHhcCc--ccccccccccCCCCC-CccceeEehhhhc
Q 020011 182 IRNVMDMNTLYG-GFAAAVIDDPLWVMNVVSSYA--ANTLA-VVYDRGL--IGTYHDWCEAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GCG~G-gfaa~L~~~~v~vmnv~p~d~--~~~l~-~a~eRGl--ig~~~d~~e~~~~yp-~sFDlVh~s~vf~ 254 (332)
.++||=+|=.-- ++|.+|...+. -+.|+-+|. -+.++ +|.+.|+ -...||...++++.= ++||++++.
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~-~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD---- 119 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPK-RITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTD---- 119 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--S-EEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCC-eEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeC----
Confidence 578999985544 67788876654 234555665 33333 4445576 345677777666533 999999998
Q ss_pred cccccCCHHH---HHHHHHhhhcCCc---EEEEEcCh---hHHHHHHHHHhcCccee
Q 020011 255 AESHRCDMKF---VLLEMDRILRPNG---YVIVRESS---YFIDAVATIAKGMKWSC 302 (332)
Q Consensus 255 h~~~~c~~~~---iL~EmdRVLRPGG---~lii~d~~---~~~~~i~~i~~~l~W~~ 302 (332)
| +.-++. ++.---..||..| +|.+.... +.+.++++..-.|.--+
T Consensus 120 --P-PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 120 --P-PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp -----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred --C-CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence 2 233432 4555555677655 55555543 45667888776666544
No 330
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=45.23 E-value=1.1e+02 Score=27.86 Aligned_cols=88 Identities=18% Similarity=0.023 Sum_probs=48.3
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCc-ccccccccccCCCCC-CccceeEehhhhccc
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGL-IGTYHDWCEAFSTYP-RTYDLLHLDGLFTAE 256 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGl-ig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~ 256 (332)
..+||=.|||. |..+..+++ .+.. .|..++. ++.+..+.+.|. ..... ..+.. .+ +.+|+|....
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~-~~~~~--~~~~~~d~vl~~~----- 167 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAA-DTADE--IGGRGADVVIEAS----- 167 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCccccc-cchhh--hcCCCCCEEEEcc-----
Confidence 45677777754 334444443 3543 0333444 556677777661 11110 00111 13 5688877431
Q ss_pred cccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 257 SHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 257 ~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.....+.++.+.|+++|.++...
T Consensus 168 ----~~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 168 ----GSPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ----CChHHHHHHHHHhcCCcEEEEEe
Confidence 11347888999999999998754
No 331
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=44.11 E-value=95 Score=29.80 Aligned_cols=87 Identities=14% Similarity=-0.096 Sum_probs=49.4
Q ss_pred CCeEEEecCcchH-HHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccc
Q 020011 182 IRNVMDMNTLYGG-FAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESH 258 (332)
Q Consensus 182 ~r~VLD~GCG~Gg-faa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~ 258 (332)
..+||=.|||.-| +++.+++ .|..+ ..++. ++.++.+.+-|.--.+.. . .+-++.||++.-..
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~v---i~~~~~~~~~~~a~~~Ga~~vi~~--~--~~~~~~~d~~i~~~------- 231 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATV---HVMTRGAAARRLALALGAASAGGA--Y--DTPPEPLDAAILFA------- 231 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeE---EEEeCChHHHHHHHHhCCceeccc--c--ccCcccceEEEECC-------
Confidence 4678888875333 4444444 45533 33333 556778877665222110 0 01125678654321
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
. ....+.+.-+.|||||.+++...
T Consensus 232 -~-~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 232 -P-AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -C-cHHHHHHHHHhhCCCcEEEEEec
Confidence 1 12478888899999999998553
No 332
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.70 E-value=85 Score=30.98 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=51.9
Q ss_pred CCCeEEEecCcc-h-HHHHHHhcCCCeEEEEeecCc-hhhHHHHH-----------hcCcccccccccccCCCCCCcc-c
Q 020011 181 KIRNVMDMNTLY-G-GFAAAVIDDPLWVMNVVSSYA-ANTLAVVY-----------DRGLIGTYHDWCEAFSTYPRTY-D 245 (332)
Q Consensus 181 ~~r~VLD~GCG~-G-gfaa~L~~~~v~vmnv~p~d~-~~~l~~a~-----------eRGlig~~~d~~e~~~~yp~sF-D 245 (332)
.+++|-=+|+|+ | ++|+.++..|.-| .-.|. ++.++.+. +.|+.... ......+-.++ |
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V---~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~l~~ 79 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDV---VAWDPAPGAEAALRANVANAWPALERQGLAPGA---SPARLRFVATIEA 79 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhh---HHhhceecCCHHH
Confidence 467888899994 3 6778888888633 33333 33332221 12221100 00111122233 2
Q ss_pred e-eEehhhhccccccCCHH-HHHHHHHhhhcCCcEEEEEcChh
Q 020011 246 L-LHLDGLFTAESHRCDMK-FVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 246 l-Vh~s~vf~h~~~~c~~~-~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
. --|..|++.++++-++. .++.|++++++|+- ++.+.+..
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~ 121 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG 121 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc
Confidence 2 24555666666443333 58899999999987 44444443
No 333
>PLN02244 tocopherol O-methyltransferase
Probab=42.49 E-value=4.6 Score=39.71 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=16.7
Q ss_pred EEEEeeceecCCceEEeccC
Q 020011 11 YLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~p 30 (332)
+|-|+-|+|||||.||++..
T Consensus 205 ~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 205 FVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHHcCCCcEEEEEEe
Confidence 45688899999999999753
No 334
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=42.48 E-value=3.8 Score=37.91 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=20.3
Q ss_pred ccccCcEEEEEeeceecCCceEEeccC
Q 020011 4 IFVSGGIYLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 4 w~~~~g~~l~E~dRvLRpgGy~v~s~p 30 (332)
|..+-..+|-++-|+|+|||+|+.+.|
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 333334567788899999999999865
No 335
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=42.38 E-value=8 Score=34.82 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.8
Q ss_pred EEEeeceecCCceEEeccC
Q 020011 12 LLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~p 30 (332)
|-++.|+|+|||+++++.+
T Consensus 87 l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 87 FSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHcCCCCEEEEEEc
Confidence 4467799999999999866
No 336
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=42.22 E-value=57 Score=33.55 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=55.0
Q ss_pred CCCeEEEecCc-chH-HHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhcc-cc
Q 020011 181 KIRNVMDMNTL-YGG-FAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTA-ES 257 (332)
Q Consensus 181 ~~r~VLD~GCG-~Gg-faa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h-~~ 257 (332)
..++||=+|+| .|. .+.+|.++++..+-|.....+.+.+.|.+-| +.+... +.+..|=+.+|+|+++-.=.| +-
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~--~~~~~l-~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG--AEAVAL-EELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC--CeeecH-HHHHHhhhhCCEEEEecCCCcccc
Confidence 56889999999 785 5578889998777788877777777777666 322211 112223388999999833322 22
Q ss_pred ccCCHHHHHHHHHh
Q 020011 258 HRCDMKFVLLEMDR 271 (332)
Q Consensus 258 ~~c~~~~iL~EmdR 271 (332)
.+..++..+..-+|
T Consensus 254 ~~~~ve~a~~~r~~ 267 (414)
T COG0373 254 TREMVERALKIRKR 267 (414)
T ss_pred CHHHHHHHHhcccC
Confidence 23333444444333
No 337
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=42.14 E-value=1.7e+02 Score=27.33 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=53.6
Q ss_pred eEEEecCcchH--HHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcc---cccccccccCCCC-C-CccceeEehhhhcc
Q 020011 184 NVMDMNTLYGG--FAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLI---GTYHDWCEAFSTY-P-RTYDLLHLDGLFTA 255 (332)
Q Consensus 184 ~VLD~GCG~Gg--faa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGli---g~~~d~~e~~~~y-p-~sFDlVh~s~vf~h 255 (332)
+|.=+|||.-| +|..|.+.|.. |+-++. ++.++.+.+.|+. |..+.-....... + ..+|+|...
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~---V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila----- 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHD---VTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILA----- 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCe---EEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEe-----
Confidence 35667877543 66677777652 333333 4455555556652 2111000001111 2 668887776
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEc-ChhHHHHHHHH
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRE-SSYFIDAVATI 294 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d-~~~~~~~i~~i 294 (332)
.+ ......++.++...|.++..+++.- .....+.+.+.
T Consensus 74 ~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~ 112 (304)
T PRK06522 74 VK-AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAY 112 (304)
T ss_pred cc-cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHh
Confidence 22 2346788999988888876655433 33334444543
No 338
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=41.81 E-value=1.1e+02 Score=28.89 Aligned_cols=91 Identities=19% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCCeEEEecCcc-hHHHHHHhc-CCC-eEEEEeecCc-hhhHHHHHhcCcccccccccc---cCCCCCCccceeEehhhh
Q 020011 181 KIRNVMDMNTLY-GGFAAAVID-DPL-WVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCE---AFSTYPRTYDLLHLDGLF 253 (332)
Q Consensus 181 ~~r~VLD~GCG~-Ggfaa~L~~-~~v-~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e---~~~~yp~sFDlVh~s~vf 253 (332)
...+||-.|||. |.++..+++ .|+ .+ ..++. ++..+.+.+.|.-..+..-.+ .+....+.||++....-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v---~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEI---VATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEE---EEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC-
Confidence 357788888764 444444544 455 23 22233 445555555553111110000 11111244888765411
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
-...+.++.+.|+++|.++.-.
T Consensus 241 --------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 --------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred --------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1246789999999999999643
No 339
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=41.66 E-value=26 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.044 Sum_probs=27.3
Q ss_pred EEeeceecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeee
Q 020011 13 LEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAK 69 (332)
Q Consensus 13 ~E~dRvLRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~ 69 (332)
-++-|+|+|||+++++.... + +.+++.++.+...++.+..
T Consensus 115 ~~~~~~Lk~gG~lv~~~~~~-------------~----~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 115 DWSLAHLHPGGRLVLTFILL-------------E----NLHSALAHLEKCGVSELDC 154 (187)
T ss_pred HHHHHhcCCCeEEEEEEecH-------------h----hHHHHHHHHHHCCCCcceE
Confidence 34678999999999976532 1 1345666777788876543
No 340
>PRK04266 fibrillarin; Provisional
Probab=41.58 E-value=8.5 Score=35.87 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=15.3
Q ss_pred EEEeeceecCCceEEec
Q 020011 12 LLEVHRILRPGGFWVLS 28 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s 28 (332)
|-|+-|+|+|||++|++
T Consensus 159 L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 159 IDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 55888999999999997
No 341
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=41.44 E-value=12 Score=36.86 Aligned_cols=16 Identities=50% Similarity=1.001 Sum_probs=14.1
Q ss_pred eeceecCCceEEeccC
Q 020011 15 VHRILRPGGFWVLSGP 30 (332)
Q Consensus 15 ~dRvLRpgGy~v~s~p 30 (332)
+-|.|+|||++|+||=
T Consensus 249 ~~~~lkpgg~lIlSGI 264 (300)
T COG2264 249 IKRLLKPGGRLILSGI 264 (300)
T ss_pred HHHHcCCCceEEEEee
Confidence 4688999999999993
No 342
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=41.37 E-value=27 Score=30.31 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=50.9
Q ss_pred ecCcch--HHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccCCHHH
Q 020011 188 MNTLYG--GFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKF 264 (332)
Q Consensus 188 ~GCG~G--gfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~ 264 (332)
+|+|.= .++..|++.+. +|...|. ++..+...+.|... |+.....-...|+|+.. +++....+.
T Consensus 7 IGlG~mG~~~a~~L~~~g~---~v~~~d~~~~~~~~~~~~g~~~-----~~s~~e~~~~~dvvi~~-----v~~~~~v~~ 73 (163)
T PF03446_consen 7 IGLGNMGSAMARNLAKAGY---EVTVYDRSPEKAEALAEAGAEV-----ADSPAEAAEQADVVILC-----VPDDDAVEA 73 (163)
T ss_dssp E--SHHHHHHHHHHHHTTT---EEEEEESSHHHHHHHHHTTEEE-----ESSHHHHHHHBSEEEE------SSSHHHHHH
T ss_pred EchHHHHHHHHHHHHhcCC---eEEeeccchhhhhhhHHhhhhh-----hhhhhhHhhcccceEee-----cccchhhhh
Confidence 455432 36677777776 4445555 55666666666322 11111111445887766 344445667
Q ss_pred HHHH--HHhhhcCCcEEEEEcChh--HHHHHHHHHh
Q 020011 265 VLLE--MDRILRPNGYVIVRESSY--FIDAVATIAK 296 (332)
Q Consensus 265 iL~E--mdRVLRPGG~lii~d~~~--~~~~i~~i~~ 296 (332)
++.+ +..-|++|-.+|-..+.. ...++.+.+.
T Consensus 74 v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~ 109 (163)
T PF03446_consen 74 VLFGENILAGLRPGKIIIDMSTISPETSRELAERLA 109 (163)
T ss_dssp HHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHH
T ss_pred hhhhhHHhhccccceEEEecCCcchhhhhhhhhhhh
Confidence 8888 788888888888766543 3445555443
No 343
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=41.25 E-value=8.4 Score=36.40 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=15.9
Q ss_pred EEEeeceecCCceEEeccCC
Q 020011 12 LLEVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~pp 31 (332)
|-|+-|+|+|||+|+++.+.
T Consensus 139 l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 139 FEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHcCCCcEEEEEEec
Confidence 34566999999999998663
No 344
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=40.88 E-value=79 Score=27.97 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=23.7
Q ss_pred CCC-CccceeEehhhhccccccCCHHHHHH--HHHhhhcCCcEEEEEcC
Q 020011 239 TYP-RTYDLLHLDGLFTAESHRCDMKFVLL--EMDRILRPNGYVIVRES 284 (332)
Q Consensus 239 ~yp-~sFDlVh~s~vf~h~~~~c~~~~iL~--EmdRVLRPGG~lii~d~ 284 (332)
.+| ...|++.|.+- ..+. +..+-|||||++++...
T Consensus 61 ~s~~~~~D~lva~~~-----------~~~~~~~~~~~l~~gg~ii~d~~ 98 (177)
T TIGR02175 61 HSQIYEPDYVVVLDP-----------TLLKTVNVTAGLKEDGILIVNTK 98 (177)
T ss_pred CCccCCCCEEEEcCH-----------HHhCccchhhCcCCCeEEEEECC
Confidence 346 78999988731 1222 24466999999999754
No 345
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=40.59 E-value=92 Score=33.42 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=76.6
Q ss_pred cccccccccchhhHHHHHHH-HHhhc---CCCCCCCCCeEEEecCcchHHHHHH------hcCCCeEEEEeecCc-hhhH
Q 020011 150 GGSASAFKHDDSKWNVRVKH-YKKLL---PALGTDKIRNVMDMNTLYGGFAAAV------IDDPLWVMNVVSSYA-ANTL 218 (332)
Q Consensus 150 g~~~~~F~~d~~~W~~~v~~-y~~~l---~~l~~~~~r~VLD~GCG~Ggfaa~L------~~~~v~vmnv~p~d~-~~~l 218 (332)
..+.+.|+.|.-.+..--.. ++.++ |.-.....-.||=+|+|-|-++.+- .++.| .+..++. |+++
T Consensus 332 ~~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkV---klyavEKNPNAi 408 (649)
T KOG0822|consen 332 NQTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKV---KLYAVEKNPNAI 408 (649)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCce---EEEEEecCcchh
Confidence 46789999998666543322 33333 3222223556999999999776433 23433 5566666 6665
Q ss_pred HHHHhcCc---ccccccccccCCC--CC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 219 AVVYDRGL---IGTYHDWCEAFST--YP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 219 ~~a~eRGl---ig~~~d~~e~~~~--yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
-.-..|.. -+.++-..+.+-. -| ...|++. |.+|..+.+.+.-..-|.-+-+.|||.|+.|=+.
T Consensus 409 vtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 409 VTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 54444432 1111111111122 34 6778765 5566666655666788999999999999887554
No 346
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=40.10 E-value=8.8 Score=35.88 Aligned_cols=21 Identities=33% Similarity=0.630 Sum_probs=17.3
Q ss_pred EEEEeeceecCCceEEeccCC
Q 020011 11 YLLEVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~pp 31 (332)
+|-|+-|+|||||.|++++..
T Consensus 165 ~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 165 VFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred HHHHHHHHcCCCcEEEEEEee
Confidence 355788999999999998754
No 347
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=39.55 E-value=4.5 Score=39.47 Aligned_cols=56 Identities=23% Similarity=0.458 Sum_probs=34.9
Q ss_pred EEEEeeceecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeeeecc-----eEEEeecCC
Q 020011 11 YLLEVHRILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDD-----IAVWQKLSD 81 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~~~-----~aiw~Kp~~ 81 (332)
++.|.+|||+|||-+-..----.+ .| -.......+.|-.+...+... +.-+||+.-
T Consensus 246 f~kEa~RiLk~gG~l~IAEv~SRf-----------~d----v~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045|consen 246 FIKEANRILKPGGLLYIAEVKSRF-----------SD----VKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTPK 306 (325)
T ss_pred HHHHHHHHhccCceEEEEehhhhc-----------cc----HHHHHHHHHHcCCeeeehhhhcceEEEEEEecCCc
Confidence 467999999999988552211101 11 223555667788877766654 466788754
No 348
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=39.17 E-value=84 Score=30.15 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCC---CCccceeEehhhhcc
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTY---PRTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~y---p~sFDlVh~s~vf~h 255 (332)
..+||=+|||. |.++..+++ .|.- .|..++. ++.++++.+.|....+..--+.+..+ .+.||+|.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~----- 242 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV----- 242 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC-----
Confidence 46788888752 233344443 3541 2333444 67788888777422211000111111 1347877644
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. -...+.+..+.|||||.+++..
T Consensus 243 ~G----~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 243 SG----HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 11 1346788889999999999865
No 349
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=38.19 E-value=20 Score=32.07 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=14.2
Q ss_pred EeeceecCCceEEeccCC
Q 020011 14 EVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 14 E~dRvLRpgGy~v~s~pp 31 (332)
++.|+|+|||.++..-.+
T Consensus 127 ~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 127 LTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred HHHHhcCCCCEEEEEcCC
Confidence 458999999999976443
No 350
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.18 E-value=1.2e+02 Score=25.27 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred EecCcc-hH-HHHHHhcCCCeEEEEeecCchhhHHHHHhcCccccccccccc-------CCCC--C-CccceeEehhhhc
Q 020011 187 DMNTLY-GG-FAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEA-------FSTY--P-RTYDLLHLDGLFT 254 (332)
Q Consensus 187 D~GCG~-Gg-faa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~-------~~~y--p-~sFDlVh~s~vf~ 254 (332)
=+|+|. |. +|++|.+.+. +|.-+.....++...++|+.-...+ .+. .... . ..||+|+..-
T Consensus 3 I~G~GaiG~~~a~~L~~~g~---~V~l~~r~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~v--- 75 (151)
T PF02558_consen 3 IIGAGAIGSLYAARLAQAGH---DVTLVSRSPRLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAV--- 75 (151)
T ss_dssp EESTSHHHHHHHHHHHHTTC---EEEEEESHHHHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-S---
T ss_pred EECcCHHHHHHHHHHHHCCC---ceEEEEccccHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEe---
Confidence 355553 43 5666667665 3444444336666777787332221 111 1122 3 7899988761
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEcC-hhHHHHHHHHH
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRES-SYFIDAVATIA 295 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d~-~~~~~~i~~i~ 295 (332)
+ --+.+.++..+.+.+.|+..+++.-+ ....+.+++..
T Consensus 76 --K-a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 76 --K-AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp --S-GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred --c-ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 1 12456899999999999977766543 45555555554
No 351
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=37.64 E-value=85 Score=29.65 Aligned_cols=91 Identities=19% Similarity=0.106 Sum_probs=47.9
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccc---cccCCCCC--CccceeEehhhh
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDW---CEAFSTYP--RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~---~e~~~~yp--~sFDlVh~s~vf 253 (332)
..+||-.|+|. |.++..+++ .|+.. +..+.. +...+.+.+.|....+..- .+.+.... +.||++.-.
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~G~~~--v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~--- 234 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKILGAKR--VIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA--- 234 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCE--EEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC---
Confidence 45788887644 445444544 35531 222232 4455555555542111100 11111222 458887643
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. -...+.++.+.|+++|.++...
T Consensus 235 --~g----~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 235 --AG----SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred --CC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 11 1357889999999999998754
No 352
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.37 E-value=95 Score=32.49 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=50.2
Q ss_pred CcchHHHHHH----hcCCCeEEEEeecCc-hhhHHHHHhcCccccccccccc--CCCCC-CccceeEehhhhccccccCC
Q 020011 190 TLYGGFAAAV----IDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEA--FSTYP-RTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 190 CG~Ggfaa~L----~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~--~~~yp-~sFDlVh~s~vf~h~~~~c~ 261 (332)
||+|.++..+ .+++. +++-+|. ++.++.+.+.|....+.|-++. +..-. +..|.+.+. .++. +
T Consensus 423 ~G~G~~G~~la~~L~~~g~---~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~-----~~~~-~ 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGI---PLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT-----IPNG-Y 493 (558)
T ss_pred ECCChHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEE-----cCCh-H
Confidence 5555555444 44554 4455666 7778888888876666553332 11123 677765543 1111 1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcChh
Q 020011 262 MKFVLLEMDRILRPNGYVIVRESSY 286 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~~~ 286 (332)
-...+...-|-+.|.-.++.+....
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAHYD 518 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCH
Confidence 1223555567788999999887554
No 353
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=37.28 E-value=11 Score=34.59 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.8
Q ss_pred EEEEEeeceecCCceEEeccC
Q 020011 10 IYLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 10 ~~l~E~dRvLRpgGy~v~s~p 30 (332)
.+|-|+-|+|+|||+|+++-+
T Consensus 142 ~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 142 ALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred HHHHHHHHhcCCCeEEEEeec
Confidence 356688999999999999965
No 354
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.22 E-value=87 Score=31.13 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=44.1
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s 250 (332)
.-..+|.==|.||-+.++.++.--.-.+.++|. ++++++|.++ +.+|...|-+||.+
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~------------l~~~~~r~~~v~~~ 81 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER------------LKEFDGRVTLVHGN 81 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH------------hhccCCcEEEEeCc
Confidence 467999999999999999887421225788999 9999999865 34566778888877
No 355
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=36.93 E-value=1.6e+02 Score=27.64 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=53.5
Q ss_pred eEEEecCcchH--HHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccc--cc------cccCCCCCCccceeEehhhh
Q 020011 184 NVMDMNTLYGG--FAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYH--DW------CEAFSTYPRTYDLLHLDGLF 253 (332)
Q Consensus 184 ~VLD~GCG~Gg--faa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~--d~------~e~~~~yp~sFDlVh~s~vf 253 (332)
+|+=+|+|.-| +|..|++.+.-| .+. +.++.++.+.+.|+..... +- +.....-...+|+|+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V-~~~--~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vila--- 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDV-TFL--VRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILA--- 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCce-EEE--ecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEE---
Confidence 46667888754 667777776522 222 2234455556666521110 00 00000011568877665
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEE-cChhHHHHHHHH
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVR-ESSYFIDAVATI 294 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~-d~~~~~~~i~~i 294 (332)
.+ .-.++.++.++...+.++..++.. ......+.+++.
T Consensus 76 --vk-~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~ 114 (305)
T PRK12921 76 --VK-AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPY 114 (305)
T ss_pred --ec-ccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHh
Confidence 12 234678999998888887665533 333334455543
No 356
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=36.00 E-value=15 Score=35.51 Aligned_cols=18 Identities=33% Similarity=0.807 Sum_probs=15.7
Q ss_pred EeeceecCCceEEeccCC
Q 020011 14 EVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 14 E~dRvLRpgGy~v~s~pp 31 (332)
-+=|+|+|||++|+--.|
T Consensus 194 kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 194 KISSLLHPGGILVVEPQP 211 (288)
T ss_pred HHHHhhCcCcEEEEcCCc
Confidence 356899999999999887
No 357
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=35.60 E-value=13 Score=33.20 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=17.0
Q ss_pred EEEEeeceecCCceEEeccC
Q 020011 11 YLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~p 30 (332)
+|-++.|+|+|||+++++.+
T Consensus 117 ~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 117 ALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHHcCCCcEEEEEeC
Confidence 45678899999999999865
No 358
>PRK07402 precorrin-6B methylase; Provisional
Probab=35.46 E-value=23 Score=31.43 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=16.7
Q ss_pred EEEeeceecCCceEEeccCC
Q 020011 12 LLEVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~pp 31 (332)
|-++.|+|+|||+|+...+-
T Consensus 125 l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 125 LQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHHHHhcCCCeEEEEEeec
Confidence 45778999999999999763
No 359
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=34.83 E-value=96 Score=29.70 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=47.3
Q ss_pred EEEecCcch--HHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccCC
Q 020011 185 VMDMNTLYG--GFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 185 VLD~GCG~G--gfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~ 261 (332)
|-=+|+|.= .++..|++.+.. |...|. ++.++.+.+.|..... +. +.+......-|+|... +++. .
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g~~---V~~~dr~~~~~~~l~~~g~~~~~-s~-~~~~~~~~~~dvIi~~-----vp~~-~ 71 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRGHD---CVGYDHDQDAVKAMKEDRTTGVA-NL-RELSQRLSAPRVVWVM-----VPHG-I 71 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHcCCcccC-CH-HHHHhhcCCCCEEEEE-----cCch-H
Confidence 334677753 367777787753 333444 4555555555543321 10 0000011345777665 4444 5
Q ss_pred HHHHHHHHHhhhcCCcEEEE
Q 020011 262 MKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii 281 (332)
+..++.++...|+||-.+|-
T Consensus 72 ~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred HHHHHHHHHhhCCCCCEEEE
Confidence 67788899889998865544
No 360
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=34.77 E-value=1.2e+02 Score=28.82 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCeEEEecC--cchHHHHHHhc-CCCeEEEEeecCchhhHHHHHh-cCcccccc-----cccccCCC-CCCccceeEehh
Q 020011 182 IRNVMDMNT--LYGGFAAAVID-DPLWVMNVVSSYAANTLAVVYD-RGLIGTYH-----DWCEAFST-YPRTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~-~~v~vmnv~p~d~~~~l~~a~e-RGlig~~~-----d~~e~~~~-yp~sFDlVh~s~ 251 (332)
..+||=.|+ |.|.++..|++ .|..++.++.. ++..+++.+ -|.-..+. ++.+.+.. .++.+|+|.-.
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~- 228 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS--DEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN- 228 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC-
Confidence 467887776 56667766665 46644333222 455556655 45321111 11111111 12567877643
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. ...+.+..+.|+++|.++.-.
T Consensus 229 ----~g-----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 ----VG-----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ----CC-----HHHHHHHHHHhccCcEEEEec
Confidence 11 256788999999999999743
No 361
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=34.53 E-value=38 Score=33.99 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=34.2
Q ss_pred ceecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeeee
Q 020011 17 RILRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKK 70 (332)
Q Consensus 17 RvLRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~ 70 (332)
.+|.|||+||=-||-. |.-...+--..+-..+=-.+.+..+++.+-|+.+.++
T Consensus 284 ~iLk~GGvWiNlGPLl-YHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 284 KILKPGGVWINLGPLL-YHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HhccCCcEEEecccee-eeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 5799999999999977 4321111100011222225678889999999999887
No 362
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=34.43 E-value=8.4 Score=36.57 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=16.2
Q ss_pred EEEEeeceecCCceEEe--ccCCc
Q 020011 11 YLLEVHRILRPGGFWVL--SGPPV 32 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~--s~ppv 32 (332)
.|-|+-|||+|||-++. .++|.
T Consensus 138 aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 138 ALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred HHHHHHHhhcCCeEEEEEEcCCCC
Confidence 36699999999996665 44443
No 363
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=34.33 E-value=1.4e+02 Score=28.21 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=50.5
Q ss_pred CCeEEEecC--cchHHHHHHhcC-CCeEEEEeecCchhhHHHHHhcCcccc--ccc---ccccC-CCCCCccceeEehhh
Q 020011 182 IRNVMDMNT--LYGGFAAAVIDD-PLWVMNVVSSYAANTLAVVYDRGLIGT--YHD---WCEAF-STYPRTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~~-~v~vmnv~p~d~~~~l~~a~eRGlig~--~~d---~~e~~-~~yp~sFDlVh~s~v 252 (332)
..+||=.|+ |.|.++..|++. |..++.++. .++..+++.+-|.-.. +++ +-+.. ...++.+|+|.-.
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~--s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~-- 214 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG--SDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN-- 214 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC--
Confidence 467887774 467777767654 654433322 2556777766664211 111 10101 1112568877643
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. ...+.++.+.|+|||.++.-.
T Consensus 215 ---~G-----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 ---VG-----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ---CC-----HHHHHHHHHHhCcCcEEEEec
Confidence 11 135688899999999999754
No 364
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=34.31 E-value=88 Score=29.50 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=46.2
Q ss_pred CCeEEEecCc-chHHHHHHhc-CCC-eEEEEeecCc-hhhHHHHHhcCcccc--cc--cccccCCC-CC-CccceeEehh
Q 020011 182 IRNVMDMNTL-YGGFAAAVID-DPL-WVMNVVSSYA-ANTLAVVYDRGLIGT--YH--DWCEAFST-YP-RTYDLLHLDG 251 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~-~~v-~vmnv~p~d~-~~~l~~a~eRGlig~--~~--d~~e~~~~-yp-~sFDlVh~s~ 251 (332)
..+||-.|+| .|.++..+++ .+. .+. .++. +.....+.+-|.... ++ ++.+.+.. .+ +.||++.-..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~---~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARII---AVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEE---EEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 4578887764 3445444444 353 222 2233 444555544442111 11 11111111 23 6788876431
Q ss_pred hhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 252 LFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 252 vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. -...+.++.+.|+++|.++...
T Consensus 245 -----g----~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 -----G----FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred -----C----CHHHHHHHHHHhhcCCEEEEEc
Confidence 0 1258889999999999998653
No 365
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=34.28 E-value=1.4e+02 Score=30.05 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCCCCCCeEEEecCcch----HHHHHHhcCC--CeEEEEeecCc-----hhhH--------HHHHhcCcccccccc-ccc
Q 020011 177 LGTDKIRNVMDMNTLYG----GFAAAVIDDP--LWVMNVVSSYA-----ANTL--------AVVYDRGLIGTYHDW-CEA 236 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~G----gfaa~L~~~~--v~vmnv~p~d~-----~~~l--------~~a~eRGlig~~~d~-~e~ 236 (332)
+....--.|+|+|-|+| +|..+|+.++ .-.+-|++++. .+.+ ++|..-|++=.++.. .+.
T Consensus 106 ~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~ 185 (374)
T PF03514_consen 106 FEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVES 185 (374)
T ss_pred hccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCc
Confidence 33334456999999999 6888998873 11233444433 2222 455555664333321 121
Q ss_pred CC--------CCCCccceeEehhhhcccccc----CCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 237 FS--------TYPRTYDLLHLDGLFTAESHR----CDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 237 ~~--------~yp~sFDlVh~s~vf~h~~~~----c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. .-++..=+|.|..-|+|+.+. .+..+.++..-|-|+|--.+++-.
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ 244 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQ 244 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEee
Confidence 11 123445567788888888522 123457888889999997666644
No 366
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=34.19 E-value=1.4e+02 Score=29.39 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=53.8
Q ss_pred eEEEecCcc-hH-HHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCC-CccceeEehhhhccccc
Q 020011 184 NVMDMNTLY-GG-FAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYP-RTYDLLHLDGLFTAESH 258 (332)
Q Consensus 184 ~VLD~GCG~-Gg-faa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp-~sFDlVh~s~vf~h~~~ 258 (332)
+|-=+|||. |. ++..|.+ .++-+..++..|. ...+..+.+.|..-.+.++-+-+.... ..+|+|+..-
T Consensus 6 rVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT------- 78 (302)
T PRK08300 6 KVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDAT------- 78 (302)
T ss_pred eEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECC-------
Confidence 566789887 43 2444443 3444445666666 356677777776544333212121111 4588888751
Q ss_pred cCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 259 RCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 259 ~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
....-.|..+.+.+-|..+|...+
T Consensus 79 ---~a~~H~e~a~~a~eaGk~VID~sP 102 (302)
T PRK08300 79 ---SAGAHVRHAAKLREAGIRAIDLTP 102 (302)
T ss_pred ---CHHHHHHHHHHHHHcCCeEEECCc
Confidence 235667888888888888887755
No 367
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=33.96 E-value=1.1e+02 Score=24.98 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCCCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh----hHHHHHHHHH
Q 020011 237 FSTYPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS----YFIDAVATIA 295 (332)
Q Consensus 237 ~~~yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~----~~~~~i~~i~ 295 (332)
...++..+|++.++. .+..|+..+.. |++++.... ++.+++.+++
T Consensus 43 ~~~~~~~aDiiv~s~------------~l~~~~~~~~~--~~v~~~~~~~d~~ei~~~l~~~L 91 (93)
T COG3414 43 IKALTDGADIIVTST------------KLADEFEDIPK--GYVVITGNGMDIEEIKQKLLEIL 91 (93)
T ss_pred cccCCCcccEEEEeh------------HhhhhcCcCCC--ceEEEEcccCCHHHHHHHHHHHH
Confidence 455778899999992 35555544444 888876643 4455555544
No 368
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=33.61 E-value=21 Score=35.92 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=14.6
Q ss_pred eeceecCCceEEeccCCc
Q 020011 15 VHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 15 ~dRvLRpgGy~v~s~ppv 32 (332)
|=+.||||||||-+-|-.
T Consensus 223 va~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 223 VAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHhhcCCCcEEEEecCcH
Confidence 446799999999998843
No 369
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=33.49 E-value=1.3e+02 Score=28.07 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=50.2
Q ss_pred CCeEEEecC--cchHHHHHHhc-CCCeEEEEeecCchhhHHHHHhcCccccc--c--cccccCCCC-CCccceeEehhhh
Q 020011 182 IRNVMDMNT--LYGGFAAAVID-DPLWVMNVVSSYAANTLAVVYDRGLIGTY--H--DWCEAFSTY-PRTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~-~~v~vmnv~p~d~~~~l~~a~eRGlig~~--~--d~~e~~~~y-p~sFDlVh~s~vf 253 (332)
..+||=.|+ |.|.++..|++ .|..++.++.. ++..+++.+.|.--.+ + ++.+.+... ++.+|+|.-.
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s--~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~--- 218 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS--DDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDN--- 218 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEEC---
Confidence 467776664 56667666665 46644333222 4556666666642111 1 111111112 2568877643
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. ...+.+..+.|+++|.++...
T Consensus 219 --~g-----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 --VG-----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --CC-----HHHHHHHHHhhccCCEEEEEc
Confidence 11 256789999999999998654
No 370
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=32.76 E-value=2.2e+02 Score=28.16 Aligned_cols=105 Identities=11% Similarity=0.059 Sum_probs=57.8
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccCC-CCCCccceeEehhhhcccc-cc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFS-TYPRTYDLLHLDGLFTAES-HR 259 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~-~yp~sFDlVh~s~vf~h~~-~~ 259 (332)
.++||=+|--...|...|....+. +--.+...........|....+. -.+. +.+..||+|..- +| .+
T Consensus 20 ~~~~l~~~~~~d~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~---~~~~~~~~~~~d~~~~~-----~pk~k 88 (342)
T PRK09489 20 QRRVLFAGDLQDDLPAQLDAASVR---VHTQQFHHWQVLSRQMGDNARFS---LVATAEDVADCDTLIYY-----WPKNK 88 (342)
T ss_pred CCcEEEEcCcchhhHHhhhccceE---EehhhhHHHHHHHhhcCCceEec---cccCCccCCCCCEEEEE-----CCCCH
Confidence 457888888888888888643332 22122222222221122211111 1111 223678876543 33 23
Q ss_pred CCHHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHHHhc
Q 020011 260 CDMKFVLLEMDRILRPNGYVIVRESSY-FIDAVATIAKG 297 (332)
Q Consensus 260 c~~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i~~~ 297 (332)
...+..|..+.+.|+|||.+++..... -+..+.++++.
T Consensus 89 ~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~ 127 (342)
T PRK09489 89 QEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLAD 127 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHH
Confidence 445679999999999999999987653 24444444443
No 371
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=32.75 E-value=74 Score=33.11 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEEcCh--hHHHHHHHH
Q 020011 262 MKFVLLEMDRILRPNGYVIVRESS--YFIDAVATI 294 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~lii~d~~--~~~~~i~~i 294 (332)
+..+..++.+.|++|-.+|++.+. ..-+++...
T Consensus 106 v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~ 140 (473)
T PLN02353 106 WESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKI 140 (473)
T ss_pred HHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHH
Confidence 457999999999998877776653 344455444
No 372
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=32.66 E-value=1.3e+02 Score=26.75 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=22.8
Q ss_pred CC-CccceeEehhhhccccccCCHHHHHH--HHHhhhcCCcEEEEEcC
Q 020011 240 YP-RTYDLLHLDGLFTAESHRCDMKFVLL--EMDRILRPNGYVIVRES 284 (332)
Q Consensus 240 yp-~sFDlVh~s~vf~h~~~~c~~~~iL~--EmdRVLRPGG~lii~d~ 284 (332)
++ ...|++.|.+- ..+. ....-|||||.+++...
T Consensus 62 ~~~~~~D~lva~~~-----------~~~~~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 62 SQIYEPDYVIVQDP-----------TLLDSVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred ccCCCCCEEEEcCH-----------HHhcchhHhcCcCCCcEEEEECC
Confidence 45 88899998732 1121 23456999999998854
No 373
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=32.57 E-value=99 Score=32.34 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=47.7
Q ss_pred CCCeEEEecCcc-h-HHHHHHhcCCCeEEEEeecCc-hhhHHHH-----------HhcCccccc--c---cccccCCCCC
Q 020011 181 KIRNVMDMNTLY-G-GFAAAVIDDPLWVMNVVSSYA-ANTLAVV-----------YDRGLIGTY--H---DWCEAFSTYP 241 (332)
Q Consensus 181 ~~r~VLD~GCG~-G-gfaa~L~~~~v~vmnv~p~d~-~~~l~~a-----------~eRGlig~~--~---d~~e~~~~yp 241 (332)
.+++|-=+|+|+ | ++|..|+..|. .|+-.|. ++.++.+ .++|.+..- . +.......+.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~---~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH---TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH
Confidence 367787889984 4 57778888776 3333444 4444432 344532110 0 0000111122
Q ss_pred --CccceeEehhhhccccccCCHH-HHHHHHHhhhcCCcEEEE
Q 020011 242 --RTYDLLHLDGLFTAESHRCDMK-FVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 242 --~sFDlVh~s~vf~h~~~~c~~~-~iL~EmdRVLRPGG~lii 281 (332)
..-|+|+ +-+++.-++. .++.|+.++++|+-.|..
T Consensus 83 ~~~~aDlVi-----Eav~E~~~vK~~vf~~l~~~~~~~ailas 120 (507)
T PRK08268 83 DLADCDLVV-----EAIVERLDVKQALFAQLEAIVSPDCILAT 120 (507)
T ss_pred HhCCCCEEE-----EcCcccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3345444 4444333343 477899998888765543
No 374
>PRK08507 prephenate dehydrogenase; Validated
Probab=32.39 E-value=1.5e+02 Score=27.80 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=48.2
Q ss_pred EEEecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccCC
Q 020011 185 VMDMNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCD 261 (332)
Q Consensus 185 VLD~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~ 261 (332)
|.=+|+|. |.++..|.+.+. ...|..+|. ++.++.+.+.|++-...+..+ . ...|+|+.. ++. ..
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~----~-~~aD~Vila-----vp~-~~ 70 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKKALELGLVDEIVSFEE----L-KKCDVIFLA-----IPV-DA 70 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHCCCCcccCCHHH----H-hcCCEEEEe-----CcH-HH
Confidence 44467775 457778877764 224555666 666777777776421111111 1 237887766 332 34
Q ss_pred HHHHHHHHHhhhcCCcEEE
Q 020011 262 MKFVLLEMDRILRPNGYVI 280 (332)
Q Consensus 262 ~~~iL~EmdRVLRPGG~li 280 (332)
+..++.++.. |+||..++
T Consensus 71 ~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 IIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHHhc-cCCCCEEE
Confidence 5667888887 88876444
No 375
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=32.17 E-value=46 Score=31.39 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.1
Q ss_pred EEEeeceecCCceEEeccCCcc
Q 020011 12 LLEVHRILRPGGFWVLSGPPVN 33 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ppv~ 33 (332)
|-++=++|||||++|||.--++
T Consensus 182 L~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 182 IDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHhcCCCCEEEEEeCCCC
Confidence 3445578999999999977663
No 376
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=31.68 E-value=36 Score=33.88 Aligned_cols=47 Identities=23% Similarity=0.553 Sum_probs=33.1
Q ss_pred ecCCceEEeccCCccccccccCCCCCHHHHHHHHHHHHHHHHhcccceeeeecceE
Q 020011 19 LRPGGFWVLSGPPVNYEHRWRGWNTTIEEQRSDYKKLQDLLTSMCFKLYAKKDDIA 74 (332)
Q Consensus 19 LRpgGy~v~s~ppv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~cw~~~~~~~~~a 74 (332)
.|||||.-+.+|| ++.+++.|.-.+| ...+|+... =|..+++-++.+
T Consensus 164 FraGGyiQie~pp--h~v~y~Dfdi~~e-Y~~DWdkf~------lf~~vs~v~e~~ 210 (410)
T COG2871 164 FRAGGYIQIEAPP--HTVNYKDFDIPPE-YHEDWDKFN------LFRYVSKVDEPI 210 (410)
T ss_pred cCCCceEEEecCC--ccccccccCCChh-Hhcchhhhc------hheeeccccHHH
Confidence 5899999999999 6777788886555 556677542 356666644433
No 377
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=24 Score=32.03 Aligned_cols=25 Identities=40% Similarity=0.713 Sum_probs=20.3
Q ss_pred EEEeeceecCCceEEeccCCccccc
Q 020011 12 LLEVHRILRPGGFWVLSGPPVNYEH 36 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ppv~~~~ 36 (332)
|-|--|+|||||+.-.+-|-.++..
T Consensus 69 lkechr~Lrp~G~LriAvPdl~f~~ 93 (185)
T COG4627 69 LKECHRFLRPGGKLRIAVPDLKFLD 93 (185)
T ss_pred HHHHHHHhCcCcEEEEEcCCcchhH
Confidence 4566799999999999999876643
No 378
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=31.37 E-value=33 Score=32.05 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=15.9
Q ss_pred CCeEEEecCcchHHHHHHhc
Q 020011 182 IRNVMDMNTLYGGFAAAVID 201 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~ 201 (332)
.-+|+++|+|.|.++..+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHH
Confidence 46899999999999988765
No 379
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=31.34 E-value=1.4e+02 Score=28.84 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCeEEEecC--cchHHHHHHhcC-CCeEEEEeecCc-hhhHHHHH-hcCcccc--cc---cccccCCCC-CCccceeEeh
Q 020011 182 IRNVMDMNT--LYGGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVY-DRGLIGT--YH---DWCEAFSTY-PRTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~-eRGlig~--~~---d~~e~~~~y-p~sFDlVh~s 250 (332)
..+||=.|+ |.|.++..|++. |..++ .++. ++.++.+. +-|.-.. ++ ++.+..... ++.+|+|.-.
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi---~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVV---GSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEE---EEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 467888887 477777777664 65433 3333 44555554 4454211 11 111111111 2467877643
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. ...+.+.-+.|++||.+++-.
T Consensus 236 -----vG-----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 -----VG-----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -----CC-----HHHHHHHHHHhccCCEEEEEC
Confidence 11 247788899999999998653
No 380
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=30.78 E-value=1.4e+02 Score=28.85 Aligned_cols=91 Identities=15% Similarity=0.009 Sum_probs=47.4
Q ss_pred CCeEEEecCc-chHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccc----cccccCCC-CC-CccceeEehhh
Q 020011 182 IRNVMDMNTL-YGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYH----DWCEAFST-YP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~----d~~e~~~~-yp-~sFDlVh~s~v 252 (332)
..+||-.|+| .|.++..+++ .|... |..+.. +...+++.+-|+...+. ++.+.+.. .+ +.||++...-
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~~--Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~- 259 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGASR--IIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV- 259 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc--EEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcC-
Confidence 4577777764 3444444444 45531 222222 44445555555421111 11111111 23 6688776431
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. -...+.++.|.|+++|.++...
T Consensus 260 ----~----~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 260 ----G----RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred ----C----ChHHHHHHHHHhhcCCeEEEEe
Confidence 1 0257889999999999998764
No 381
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=30.29 E-value=1.7e+02 Score=25.37 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=26.8
Q ss_pred CC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 240 YP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 240 yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
++ ..+|++.+.+ . ..+.....-|||||++++....
T Consensus 53 ~~~~~~Dilv~l~----------~-~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 53 PPVGEADILVALD----------P-EALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp S-TSSESEEEESS----------H-HHHHHCGTTCETTEEEEEETTT
T ss_pred cccCCCCEEEEcC----------H-HHHHHHhcCcCcCeEEEEECCC
Confidence 44 8999999982 1 3455777789999999998854
No 382
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=30.23 E-value=2.4e+02 Score=29.23 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=52.6
Q ss_pred CCeEEEecCcchHHHHHHhc---CCCeEEEEeecCc-hhhHHHHHh----cCcccc-c-ccccccCCCC---C-Ccccee
Q 020011 182 IRNVMDMNTLYGGFAAAVID---DPLWVMNVVSSYA-ANTLAVVYD----RGLIGT-Y-HDWCEAFSTY---P-RTYDLL 247 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~---~~v~vmnv~p~d~-~~~l~~a~e----RGlig~-~-~d~~e~~~~y---p-~sFDlV 247 (332)
...|.|+-||+|+|...... .+.-...+.+.+. .++...+.. +|..|. + ......+..+ . ..||.|
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v 297 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVV 297 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEE
Confidence 46799999999998854322 1221234566666 666555443 333331 1 1112233322 2 568887
Q ss_pred Eehhhhcc---------------------cccc-CCHHHHHHHHHhhhcCCcEEEE
Q 020011 248 HLDGLFTA---------------------ESHR-CDMKFVLLEMDRILRPNGYVIV 281 (332)
Q Consensus 248 h~s~vf~h---------------------~~~~-c~~~~iL~EmdRVLRPGG~lii 281 (332)
.++-=|+. +++. ..=-.+++-+..+|++||...+
T Consensus 298 ~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 298 VSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred eecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 76543221 0100 0001366778889999997443
No 383
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=30.21 E-value=20 Score=33.48 Aligned_cols=21 Identities=38% Similarity=0.866 Sum_probs=17.6
Q ss_pred EEEEEeeceecCCceEEeccC
Q 020011 10 IYLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 10 ~~l~E~dRvLRpgGy~v~s~p 30 (332)
+||==|+++|+|||-||+.+=
T Consensus 162 ~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 162 VYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eehhhHhhccCCCcEEEEEec
Confidence 466668899999999999876
No 384
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=30.04 E-value=1.6e+02 Score=30.13 Aligned_cols=86 Identities=10% Similarity=-0.091 Sum_probs=50.2
Q ss_pred CCeEEEecCcchHHHH--HHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccc
Q 020011 182 IRNVMDMNTLYGGFAA--AVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESH 258 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa--~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~ 258 (332)
.++|+=+|||.=|.+. .+...|.. |+-+|. +..+..|.+-|..... .-+.+ ..+|+|+..-
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~---ViV~d~d~~R~~~A~~~G~~~~~--~~e~v----~~aDVVI~at------- 265 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGAR---VIVTEVDPICALQAAMEGYEVMT--MEEAV----KEGDIFVTTT------- 265 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEECChhhHHHHHhcCCEEcc--HHHHH----cCCCEEEECC-------
Confidence 5789999999865443 33445653 333444 4456667666652111 10111 5679888651
Q ss_pred cCCHHHHH-HHHHhhhcCCcEEEEEcCh
Q 020011 259 RCDMKFVL-LEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 259 ~c~~~~iL-~EmdRVLRPGG~lii~d~~ 285 (332)
.. ..++ .+.-+.+||||.++.....
T Consensus 266 -G~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 -GN-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -CC-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 11 2344 4568899999999876643
No 385
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=29.88 E-value=6.5 Score=36.54 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.1
Q ss_pred EEEEEeeceecCCceEEeccC
Q 020011 10 IYLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 10 ~~l~E~dRvLRpgGy~v~s~p 30 (332)
.+|-|+-|+|+|||+++.+-|
T Consensus 107 ~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 107 DLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred HHHHHHHHhCCCCcEEEEEcC
Confidence 345678899999999999754
No 386
>PRK08317 hypothetical protein; Provisional
Probab=29.71 E-value=16 Score=32.29 Aligned_cols=19 Identities=47% Similarity=0.763 Sum_probs=15.7
Q ss_pred EEEeeceecCCceEEeccC
Q 020011 12 LLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~p 30 (332)
|-++-|+|+|||+++++.+
T Consensus 107 l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 107 LAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred HHHHHHHhcCCcEEEEEec
Confidence 3467799999999999875
No 387
>PRK11524 putative methyltransferase; Provisional
Probab=29.64 E-value=74 Score=30.36 Aligned_cols=41 Identities=10% Similarity=-0.121 Sum_probs=32.1
Q ss_pred CCCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc
Q 020011 181 KIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
....|||-=||.|+++.+-.+.+- +..+++. ++..++|..|
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHH
Confidence 456799999999988877666665 4467777 7788888888
No 388
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=29.23 E-value=1e+02 Score=29.74 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCC-CccceeEehh--hhccccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 239 TYP-RTYDLLHLDG--LFTAESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 239 ~yp-~sFDlVh~s~--vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+++ ...|+|.+.+ ++.. +.-|..-|||||++|+....
T Consensus 62 ~~~~~~~D~lv~~~~~~~~~----------~~~~~~~l~~gg~vi~n~~~ 101 (312)
T PRK14028 62 QEPVKTPDVAVIFDDKLIDP----------MRFAIDAVKPGGYVILNTGK 101 (312)
T ss_pred ccccCCCCEEEEeChhhhcc----------ccHHhcCcCCCeEEEEeCCC
Confidence 456 8899999984 2111 01134578999999998753
No 389
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=29.06 E-value=1.7e+02 Score=29.73 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=55.3
Q ss_pred CeEEEecCcchH--HHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccccccc--------cc-ccCC--CCC-Ccccee
Q 020011 183 RNVMDMNTLYGG--FAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHD--------WC-EAFS--TYP-RTYDLL 247 (332)
Q Consensus 183 r~VLD~GCG~Gg--faa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d--------~~-e~~~--~yp-~sFDlV 247 (332)
.+|-=+|.|+-| +|+.|++.|. +|..+|. ++.++. ..+|.+-.+-. .. .... +-+ ..-|+|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~---~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvv 79 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK---QVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAF 79 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC---EEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEE
Confidence 456667999764 6777888886 4566666 555554 33343211100 00 0000 011 234555
Q ss_pred Eehhhhcccccc---------CCHHHHHHHHHhhhcCCcEEEEEcCh--hHHHHHHH
Q 020011 248 HLDGLFTAESHR---------CDMKFVLLEMDRILRPNGYVIVRESS--YFIDAVAT 293 (332)
Q Consensus 248 h~s~vf~h~~~~---------c~~~~iL~EmdRVLRPGG~lii~d~~--~~~~~i~~ 293 (332)
+.. ++.+ ..+..++.++.+.||+|-.+|+..+. ...+++..
T Consensus 80 ii~-----vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 80 LIA-----VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EEE-----cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 443 3322 23445778889999999888887653 44555554
No 390
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=29.03 E-value=1.7e+02 Score=27.77 Aligned_cols=92 Identities=16% Similarity=0.056 Sum_probs=47.8
Q ss_pred CCeEEEecCc-chHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCccccc----ccccccCCCC-C-CccceeEehhh
Q 020011 182 IRNVMDMNTL-YGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTY----HDWCEAFSTY-P-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~----~d~~e~~~~y-p-~sFDlVh~s~v 252 (332)
..+||-.|+| .|.+++.+++ .|... |..++. +.....+.+-|....+ .++.+.+... + +.||+|.-. +
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~-~ 238 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKASGAYP--VIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM-S 238 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC-C
Confidence 4556666654 3334444444 35431 222233 5555566555542111 1111211112 3 568887643 1
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
. -...+.++.+.|+++|.++....
T Consensus 239 g--------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 239 G--------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred C--------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 12578899999999999988653
No 391
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.97 E-value=70 Score=27.99 Aligned_cols=38 Identities=13% Similarity=-0.097 Sum_probs=26.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHH
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY 222 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~ 222 (332)
...|||-=||.|+++.+-.+.|. ...+++. +....+|.
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAK 230 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHH
T ss_pred ceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhc
Confidence 56799999999998887777765 3456666 66666654
No 392
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=28.61 E-value=13 Score=36.49 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=17.3
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 020011 11 YLLEVHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv 32 (332)
.|.|+-|+|||||.+|++...+
T Consensus 207 ~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 207 HLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred HHHHHHHhcCCCCEEEEEEEEe
Confidence 4567889999999999875433
No 393
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=28.46 E-value=47 Score=31.84 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=17.6
Q ss_pred CCeEEEecCcchHHHHHHhc
Q 020011 182 IRNVMDMNTLYGGFAAAVID 201 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~ 201 (332)
...++++|||-|.++.+++.
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~ 38 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQ 38 (259)
T ss_pred CCEEEEECCCchHHHHHHHH
Confidence 56899999999999988865
No 394
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=28.41 E-value=26 Score=35.44 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.1
Q ss_pred EEEEeeceecCCceEEeccCCcc
Q 020011 11 YLLEVHRILRPGGFWVLSGPPVN 33 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv~ 33 (332)
+|-++=|+|||||++|+|---++
T Consensus 350 lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCC
Confidence 34456688999999999987763
No 395
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=28.21 E-value=53 Score=30.63 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 260 CDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 260 c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
+.+...|.-..-+|.||+|+|+-|..
T Consensus 124 ~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 124 EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 45667777789999999999998864
No 396
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=28.05 E-value=19 Score=35.53 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.4
Q ss_pred EEEEeeceecCCceEEeccC
Q 020011 11 YLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~p 30 (332)
+|-|+-|+|+|||.++++-+
T Consensus 217 ~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 217 FCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHHHHHHHcCCCcEEEEEEC
Confidence 45567899999999999854
No 397
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=27.98 E-value=1.7e+02 Score=26.46 Aligned_cols=90 Identities=20% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCeEEEecC--cchHHHHHHhc-CCCeEEEEeecCchhhHHHHHhcCcccccc----cccccCCC-CC-CccceeEehhh
Q 020011 182 IRNVMDMNT--LYGGFAAAVID-DPLWVMNVVSSYAANTLAVVYDRGLIGTYH----DWCEAFST-YP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~-~~v~vmnv~p~d~~~~l~~a~eRGlig~~~----d~~e~~~~-yp-~sFDlVh~s~v 252 (332)
..+||-.|| +.|..++.++. .|..++.+... ++..+.+.+.|....+. +..+.+.. .+ +.+|++....
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~- 216 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKALGARVIAAASS--EEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPV- 216 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC--HHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECc-
Confidence 468999998 34444444444 46543323222 45566666666422111 11111111 23 5688776531
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. ...+.++.+.|+++|.++...
T Consensus 217 ----g-----~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 217 ----G-----GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ----c-----HHHHHHHHHhhccCCEEEEEc
Confidence 1 135667788999999988643
No 398
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=27.87 E-value=1.4e+02 Score=32.84 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCCCeEEEecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHHHH-----------hcCccccc--ccccccCCCCCCc
Q 020011 180 DKIRNVMDMNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAVVY-----------DRGLIGTY--HDWCEAFSTYPRT 243 (332)
Q Consensus 180 ~~~r~VLD~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~-----------eRGlig~~--~d~~e~~~~yp~s 243 (332)
..+++|-=+|+|+ +++|..++..|. .|+-+|. ++.++.+. ++|.+... .... ...++-.+
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~---~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~-~~i~~~~~ 408 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGL---KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSIL-SNLTPTLD 408 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCC---cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH-hCeEEeCC
Confidence 3578888899997 356666777776 3344444 44443332 22322100 0000 01111111
Q ss_pred c-ceeEehhhhccccccCCH-HHHHHHHHhhhcCCcEEEEEcChhHHHHHHHH
Q 020011 244 Y-DLLHLDGLFTAESHRCDM-KFVLLEMDRILRPNGYVIVRESSYFIDAVATI 294 (332)
Q Consensus 244 F-DlVh~s~vf~h~~~~c~~-~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i 294 (332)
| ++--|..|++-++..-++ ..++.|++++++|+..|..+...-.+.+|...
T Consensus 409 ~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~ 461 (737)
T TIGR02441 409 YSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAV 461 (737)
T ss_pred HHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhh
Confidence 1 233455555555432222 36999999999999887766655445555543
No 399
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=27.76 E-value=13 Score=32.56 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=17.9
Q ss_pred EEEEeeceecCCceEEeccCC
Q 020011 11 YLLEVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~pp 31 (332)
+|-|+.|+|+|||.+++..+.
T Consensus 122 ~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 122 FLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred HHHhHHHhhCCCCEEEEEEec
Confidence 577899999999999997653
No 400
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=27.65 E-value=14 Score=33.85 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.3
Q ss_pred EEEEeeceecCCceEEec
Q 020011 11 YLLEVHRILRPGGFWVLS 28 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s 28 (332)
.|-|+-|+|+|||.||..
T Consensus 147 ~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 147 ALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 456788999999999984
No 401
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=27.24 E-value=1.5e+02 Score=31.90 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=54.4
Q ss_pred CeEEEecCcchHHHH----HHhcCCCeEEEEeecCc-hhhHHHHHhcCccccccccccc--CCCCC-CccceeEehhhhc
Q 020011 183 RNVMDMNTLYGGFAA----AVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEA--FSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 183 r~VLD~GCG~Ggfaa----~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~--~~~yp-~sFDlVh~s~vf~ 254 (332)
.+|+=+| +|.++. .|.+++. +++-+|. ++.++.+.+.|....+.|-++. +..-. +..|++.+.
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~---~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~---- 471 (621)
T PRK03562 401 PRVIIAG--FGRFGQIVGRLLLSSGV---KMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINA---- 471 (621)
T ss_pred CcEEEEe--cChHHHHHHHHHHhCCC---CEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEE----
Confidence 3455555 554444 4455565 4455666 7788888888876666654332 11123 567777765
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEcCh
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~ 285 (332)
..+ .+....+.+.-|-+.|.-.++.|...
T Consensus 472 -~~d-~~~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 472 -IDD-PQTSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred -eCC-HHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 121 22334666778888898888877654
No 402
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=27.23 E-value=20 Score=33.26 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.4
Q ss_pred EEEEeeceecCCceEEecc
Q 020011 11 YLLEVHRILRPGGFWVLSG 29 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ 29 (332)
+|-|+-|+|+|||.|+++.
T Consensus 146 ~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 146 LLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHhcCCCCEEEEEE
Confidence 4568889999999999975
No 403
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=27.21 E-value=35 Score=30.49 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.8
Q ss_pred EeeceecCCceEEeccCC
Q 020011 14 EVHRILRPGGFWVLSGPP 31 (332)
Q Consensus 14 E~dRvLRpgGy~v~s~pp 31 (332)
++-|+|+|||++|++.+.
T Consensus 130 ~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 130 ASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred HHHHHcCCCcEEEEEeec
Confidence 557899999999987663
No 404
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=26.94 E-value=32 Score=34.04 Aligned_cols=15 Identities=47% Similarity=1.156 Sum_probs=13.8
Q ss_pred ceecCCceEEeccCC
Q 020011 17 RILRPGGFWVLSGPP 31 (332)
Q Consensus 17 RvLRpgGy~v~s~pp 31 (332)
+.|.||||.||++.|
T Consensus 237 ~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 237 RALEPGGYLIYTGQP 251 (311)
T ss_pred HHhCCCcEEEEcCCC
Confidence 578899999999999
No 405
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=26.89 E-value=85 Score=32.43 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=23.1
Q ss_pred CCCeEEEecCcchHHHHHHhc-CCCeEEEEee
Q 020011 181 KIRNVMDMNTLYGGFAAAVID-DPLWVMNVVS 211 (332)
Q Consensus 181 ~~r~VLD~GCG~Ggfaa~L~~-~~v~vmnv~p 211 (332)
.+..|.|+|+|-|-++..|.= .|.-||.|.+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIeg 184 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEG 184 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEecc
Confidence 477899999999999998854 4554444443
No 406
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=26.86 E-value=21 Score=32.27 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=14.6
Q ss_pred EEEeeceecCCceEEecc
Q 020011 12 LLEVHRILRPGGFWVLSG 29 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ 29 (332)
|-|+-|+|+|||+++..-
T Consensus 134 l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 134 LREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHHHcCcCeEEEEEE
Confidence 446789999999999753
No 407
>PLN02256 arogenate dehydrogenase
Probab=26.82 E-value=2e+02 Score=27.91 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=52.2
Q ss_pred CCCCeEEEecCcc-h-HHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhcccc
Q 020011 180 DKIRNVMDMNTLY-G-GFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAES 257 (332)
Q Consensus 180 ~~~r~VLD~GCG~-G-gfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~ 257 (332)
+...+|.=+|+|. | .++..|.+.+. .|..++.....+.+.+.|... +.+..+. .....|+|+.. .+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~---~V~~~d~~~~~~~a~~~gv~~-~~~~~e~---~~~~aDvVila-----vp 101 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH---TVLATSRSDYSDIAAELGVSF-FRDPDDF---CEEHPDVVLLC-----TS 101 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEECccHHHHHHHcCCee-eCCHHHH---hhCCCCEEEEe-----cC
Confidence 3456787788874 3 47777777764 333444322234454445421 1111111 01346877665 22
Q ss_pred ccCCHHHHHHHH-HhhhcCCcEEEEEcCh---hHHHHHHHHH
Q 020011 258 HRCDMKFVLLEM-DRILRPNGYVIVRESS---YFIDAVATIA 295 (332)
Q Consensus 258 ~~c~~~~iL~Em-dRVLRPGG~lii~d~~---~~~~~i~~i~ 295 (332)
. ..+..++.++ ...|+||.. ++.-.. ..++.+++..
T Consensus 102 ~-~~~~~vl~~l~~~~l~~~~i-viDv~SvK~~~~~~~~~~l 141 (304)
T PLN02256 102 I-LSTEAVLRSLPLQRLKRSTL-FVDVLSVKEFPKNLLLQVL 141 (304)
T ss_pred H-HHHHHHHHhhhhhccCCCCE-EEecCCchHHHHHHHHHhC
Confidence 2 2456677777 455777764 343332 3455555554
No 408
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.70 E-value=2.8e+02 Score=26.33 Aligned_cols=91 Identities=19% Similarity=0.103 Sum_probs=46.7
Q ss_pred CCeEEEecCcc-hHHHHHHhcC-CCeEEEEeecCc-hhhHHHHHhcCccccc--c--cc---cccCCC-CC-CccceeEe
Q 020011 182 IRNVMDMNTLY-GGFAAAVIDD-PLWVMNVVSSYA-ANTLAVVYDRGLIGTY--H--DW---CEAFST-YP-RTYDLLHL 249 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~~-~v~vmnv~p~d~-~~~l~~a~eRGlig~~--~--d~---~e~~~~-yp-~sFDlVh~ 249 (332)
..+||=.|+|. |.++..|++. |..+ +..+.. ++..+++.+.|.-..+ + ++ .+.+.. .+ +.||+|.-
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~--v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATK--VVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 45677666643 4455555553 5431 222222 4445555544431111 1 10 111111 23 55888874
Q ss_pred hhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 250 DGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 250 s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. .-...+.++.+.|+++|.++...
T Consensus 241 ~~---------g~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 241 CT---------GAESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CC---------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 31 01237889999999999998653
No 409
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=26.22 E-value=4.9e+02 Score=23.66 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCeEEEecC--cchHHHHHHhc-CCCeEEEEeecCchhhHHHHHhcCcccccccccccC---CCCCCccceeEehhhhcc
Q 020011 182 IRNVMDMNT--LYGGFAAAVID-DPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAF---STYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~-~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~---~~yp~sFDlVh~s~vf~h 255 (332)
..+||-.|| +.|.+++.++. .|..++.++. ....+++.+.|+--.+..-...+ .+..+.+|+|.... -.
T Consensus 144 g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-~~- 218 (319)
T cd08267 144 GQRVLINGASGGVGTFAVQIAKALGAHVTGVCS---TRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAV-GN- 218 (319)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC---HHHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECC-Cc-
Confidence 568998887 35555555554 3665444432 24455666666411111101111 11226688886531 10
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
........+.. |+|+|.++.-.
T Consensus 219 -----~~~~~~~~~~~-l~~~g~~i~~g 240 (319)
T cd08267 219 -----SPFSLYRASLA-LKPGGRYVSVG 240 (319)
T ss_pred -----hHHHHHHhhhc-cCCCCEEEEec
Confidence 11233333333 99999999764
No 410
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=25.87 E-value=22 Score=35.73 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=16.2
Q ss_pred EEEEeeceecCCceEEeccC
Q 020011 11 YLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~p 30 (332)
+|-++.|+|+|||+++++..
T Consensus 249 ~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 249 YFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHHHHcCCCcEEEEEEc
Confidence 45677899999999999743
No 411
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=25.78 E-value=92 Score=30.71 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=23.6
Q ss_pred CHHHHHHHHHhhhcCCcEEEEEcChhHHHH
Q 020011 261 DMKFVLLEMDRILRPNGYVIVRESSYFIDA 290 (332)
Q Consensus 261 ~~~~iL~EmdRVLRPGG~lii~d~~~~~~~ 290 (332)
.++.+|..+-.+|+|||.+++..-+..-++
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLEDR 247 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLEDR 247 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence 345689999999999999999887654333
No 412
>PRK13699 putative methylase; Provisional
Probab=25.44 E-value=1e+02 Score=28.71 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=27.7
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhc
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDR 224 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eR 224 (332)
...|||-=||.|+++.+-.+.+. +..+++. +...+++..|
T Consensus 164 g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHH
Confidence 45799999999998877666554 3345555 5566666555
No 413
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=25.34 E-value=1.8e+02 Score=29.55 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHH-hhcCCCCCCCCCeEEEecCcchHHHHHHhcCC---------CeEEE-EeecCchhhHHHHHhcCccc
Q 020011 160 DSKWNVRVKHYK-KLLPALGTDKIRNVMDMNTLYGGFAAAVIDDP---------LWVMN-VVSSYAANTLAVVYDRGLIG 228 (332)
Q Consensus 160 ~~~W~~~v~~y~-~~l~~l~~~~~r~VLD~GCG~Ggfaa~L~~~~---------v~vmn-v~p~d~~~~l~~a~eRGlig 228 (332)
+..+=+.+..+. +++..++.-....++.||+|.|.|++.|...- ....- |.+...-.+.|...-.+..
T Consensus 55 s~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~- 133 (370)
T COG1565 55 SQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE- 133 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-
Confidence 344555555432 22222222224569999999999998876531 11111 2222222222221111222
Q ss_pred ccccccccCCCCCCc-cceeEehhhhcccc
Q 020011 229 TYHDWCEAFSTYPRT-YDLLHLDGLFTAES 257 (332)
Q Consensus 229 ~~~d~~e~~~~yp~s-FDlVh~s~vf~h~~ 257 (332)
..-.|++-+...|.. .=+++|+.+|.-+|
T Consensus 134 ~~~~~~~~~e~~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 134 DLIRWVEWVEDLPKKFPGIVVSNELFDALP 163 (370)
T ss_pred cchhHHHHHHhccccCceEEEechhhcccc
Confidence 223356666667755 45667777776543
No 414
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=25.23 E-value=23 Score=32.91 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=15.2
Q ss_pred EEEeeceecCCceEEeccC
Q 020011 12 LLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~p 30 (332)
|-|+-|+|+|||++++.-.
T Consensus 132 l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 132 LQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHcCCCeEEEEEEE
Confidence 4577899999999987543
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=25.21 E-value=3.3e+02 Score=25.76 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCeEEEecCcc-h-HHHHHHhcCCCeEEEEeecCc-hhhHHHHHh--------------cCcccc--ccccccc--C-CC
Q 020011 182 IRNVMDMNTLY-G-GFAAAVIDDPLWVMNVVSSYA-ANTLAVVYD--------------RGLIGT--YHDWCEA--F-ST 239 (332)
Q Consensus 182 ~r~VLD~GCG~-G-gfaa~L~~~~v~vmnv~p~d~-~~~l~~a~e--------------RGlig~--~~d~~e~--~-~~ 239 (332)
+++|.=+|||+ | ++|..|+..|. +|.-+|. ++.++.+.+ +|.... .....+. + ..
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~---~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGY---DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 56788889985 3 47777777775 3444444 444443222 222110 0000000 0 11
Q ss_pred CC--CccceeEehhhhccccccCC-HHHHHHHHHhhhcCCcEEEEEcChh-HHHHHHHH
Q 020011 240 YP--RTYDLLHLDGLFTAESHRCD-MKFVLLEMDRILRPNGYVIVRESSY-FIDAVATI 294 (332)
Q Consensus 240 yp--~sFDlVh~s~vf~h~~~~c~-~~~iL~EmdRVLRPGG~lii~d~~~-~~~~i~~i 294 (332)
+. ...|+|+-+ +++... ...++.++.+.++|+-.|+ +.... .+.++.+.
T Consensus 80 ~~~~~~aDlViea-----v~e~~~~k~~~~~~l~~~~~~~~il~-S~tsg~~~~~la~~ 132 (291)
T PRK06035 80 YESLSDADFIVEA-----VPEKLDLKRKVFAELERNVSPETIIA-SNTSGIMIAEIATA 132 (291)
T ss_pred HHHhCCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEE-EcCCCCCHHHHHhh
Confidence 11 345665554 332211 3468889999998887654 44433 34555443
No 416
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.00 E-value=1.9e+02 Score=25.88 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=50.7
Q ss_pred EecCcchH--HHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccccc--------ccc--ccc--CC-CCC---Ccccee
Q 020011 187 DMNTLYGG--FAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTY--------HDW--CEA--FS-TYP---RTYDLL 247 (332)
Q Consensus 187 D~GCG~Gg--faa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~--------~d~--~e~--~~-~yp---~sFDlV 247 (332)
=+|.||=| +|+.|++.|. +|.++|. ++.++.+. +|..-.+ ..- ... +. .+. ...|++
T Consensus 5 ViGlGyvGl~~A~~lA~~G~---~V~g~D~~~~~v~~l~-~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 5 VIGLGYVGLPLAAALAEKGH---QVIGVDIDEEKVEALN-NGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp EE--STTHHHHHHHHHHTTS---EEEEE-S-HHHHHHHH-TTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred EECCCcchHHHHHHHHhCCC---EEEEEeCChHHHHHHh-hccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 36888765 6788889887 6677887 55554433 3421100 000 000 00 011 224443
Q ss_pred Eeh-hhhccccccCC---HHHHHHHHHhhhcCCcEEEEEcCh--hHHH-HHHHHHh
Q 020011 248 HLD-GLFTAESHRCD---MKFVLLEMDRILRPNGYVIVRESS--YFID-AVATIAK 296 (332)
Q Consensus 248 h~s-~vf~h~~~~c~---~~~iL~EmdRVLRPGG~lii~d~~--~~~~-~i~~i~~ 296 (332)
+.. ..-..-...++ +..++.++.+.||+|-.+++..+. ...+ .++.+++
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile 136 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILE 136 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhh
Confidence 332 11111111112 457899999999998888887754 3333 3444443
No 417
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=24.91 E-value=1.9e+02 Score=27.32 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=50.0
Q ss_pred CCCCCCCeEEEecC--cchHHHHHHhcC-CC-eEEEEeecCchhhHHHHHh-cCccccc--c--cccccCCC-CCCccce
Q 020011 177 LGTDKIRNVMDMNT--LYGGFAAAVIDD-PL-WVMNVVSSYAANTLAVVYD-RGLIGTY--H--DWCEAFST-YPRTYDL 246 (332)
Q Consensus 177 l~~~~~r~VLD~GC--G~Ggfaa~L~~~-~v-~vmnv~p~d~~~~l~~a~e-RGlig~~--~--d~~e~~~~-yp~sFDl 246 (332)
+..+...+||=.|+ |.|.++..+++. |. .++.++.. ++..+.+.+ -|.-..+ + ++.+.+.. .++.+|+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s--~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS--DEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceE
Confidence 44433367877776 567777666653 54 34333222 444555544 3431111 1 11111111 1256888
Q ss_pred eEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 247 LHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 247 Vh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|... .. ...+.++.+.|+|||.++.-.
T Consensus 228 vid~-----~g-----~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 228 YFDN-----VG-----GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEC-----CC-----cHHHHHHHHHhccCCEEEEEe
Confidence 7643 11 124578889999999999743
No 418
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=24.78 E-value=34 Score=34.74 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=16.3
Q ss_pred EEEeeceecCCceEEeccCCc
Q 020011 12 LLEVHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ppv 32 (332)
|-++=|+|||||++|+|---+
T Consensus 367 L~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 367 LESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHhcCCCCEEEEEeCCC
Confidence 344568899999999987655
No 419
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=24.58 E-value=2e+02 Score=27.73 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=23.8
Q ss_pred CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 242 RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 242 ~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
+.||+|... +. . ...+.++.+.|+++|.++...
T Consensus 255 ~~~d~vld~-----vg---~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 255 RGVDVVVEA-----LG---K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCEEEEe-----CC---C-HHHHHHHHHHHhcCCEEEEEc
Confidence 668887753 11 1 137888999999999999754
No 420
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=24.44 E-value=41 Score=30.05 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=17.9
Q ss_pred EEEEeeceecCCceEEeccCCc
Q 020011 11 YLLEVHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~ppv 32 (332)
+|-|+-|+|+|||.++++....
T Consensus 114 ~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 114 FLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred HHHHHHHHhCCCCEEEEEeCCH
Confidence 4557899999999999887643
No 421
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=24.17 E-value=15 Score=36.06 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.4
Q ss_pred EEEEeeceecCCceEEeccC
Q 020011 11 YLLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~s~p 30 (332)
+|.++-|+|+|||.+|++..
T Consensus 208 ~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 208 HLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred HHHHHHHhcCCCcEEEEEEE
Confidence 45678899999999999743
No 422
>PF04563 RNA_pol_Rpb2_1: RNA polymerase beta subunit; InterPro: IPR007644 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain []. The other lobe, RNA polymerase Rpb2, domain 2, is nested within this domain.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H ....
Probab=24.13 E-value=32 Score=31.24 Aligned_cols=11 Identities=36% Similarity=1.295 Sum_probs=7.6
Q ss_pred CCceEEeccCC
Q 020011 21 PGGFWVLSGPP 31 (332)
Q Consensus 21 pgGy~v~s~pp 31 (332)
||||||..|-.
T Consensus 130 ~GGYFIInG~E 140 (203)
T PF04563_consen 130 PGGYFIINGSE 140 (203)
T ss_dssp --SSEEETTEE
T ss_pred CCCEEEECCCh
Confidence 79999998864
No 423
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.68 E-value=3.1e+02 Score=27.78 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=56.0
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCccccc---cc-----ccccC-CCCC-CccceeEeh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTY---HD-----WCEAF-STYP-RTYDLLHLD 250 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~---~d-----~~e~~-~~yp-~sFDlVh~s 250 (332)
..+||=+|||.=|+.+-|..+..=.-.|+-+|. ++.|+.|++-|.-... |. ..+.. .-+- ..||..+-.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 568999999998888777665322235677777 8899999986642211 10 00000 0122 336655433
Q ss_pred hhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 251 GLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 251 ~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
. -.+..+.-.--.||+||.+++-+
T Consensus 250 s---------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 250 S---------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred c---------CchHHHHHHHHHhccCCEEEEec
Confidence 1 22334555566899999988876
No 424
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=23.65 E-value=1.7e+02 Score=32.03 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCCeEEEecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHHH-----------HhcCcccc--cccccccCCCCCCcc
Q 020011 181 KIRNVMDMNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAVV-----------YDRGLIGT--YHDWCEAFSTYPRTY 244 (332)
Q Consensus 181 ~~r~VLD~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a-----------~eRGlig~--~~d~~e~~~~yp~sF 244 (332)
.+++|-=+|+|+ .++|..++..|. +|+-+|. ++.++.+ .++|.+.. ....-. ...+-.++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~---~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~-~i~~~~~~ 387 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGV---PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLS-SIRPTLDY 387 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHh-CeEEeCCH
Confidence 577899999998 467777777776 3343444 4444332 23343211 000000 11111122
Q ss_pred c-eeEehhhhccccccCCH-HHHHHHHHhhhcCCcEEEEEcChhHHHHHHH
Q 020011 245 D-LLHLDGLFTAESHRCDM-KFVLLEMDRILRPNGYVIVRESSYFIDAVAT 293 (332)
Q Consensus 245 D-lVh~s~vf~h~~~~c~~-~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~ 293 (332)
+ +--|..|++-++.+-++ ..++.|++++++|+-.|......-.+.+|.+
T Consensus 388 ~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 438 (715)
T PRK11730 388 AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK 438 (715)
T ss_pred HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 2 33455555555432222 3699999999999966655554433444444
No 425
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=23.48 E-value=5e+02 Score=24.51 Aligned_cols=91 Identities=15% Similarity=0.015 Sum_probs=46.4
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCC-eEEEEeecCchhhHHHHHhcCcccccc----cccccCCC-CC-CccceeEehhh
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPL-WVMNVVSSYAANTLAVVYDRGLIGTYH----DWCEAFST-YP-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v-~vmnv~p~d~~~~l~~a~eRGlig~~~----d~~e~~~~-yp-~sFDlVh~s~v 252 (332)
..+||-.|+|. |.+++.|++ .|. .+. ++ ...++....+.+-|....+. ++. .+.. -+ +.+|+|...-
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~vd~vld~~- 239 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVI-AS-DPNPYRLELAKKMGADVVINPREEDVV-EVKSVTDGTGVDVVLEMS- 239 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEE-EE-CCCHHHHHHHHHhCcceeeCcccccHH-HHHHHcCCCCCCEEEECC-
Confidence 45677766642 444454544 354 332 22 12244444555445321111 110 0011 12 5688877531
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEcC
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRES 284 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~ 284 (332)
. -...+.++.+.|+|+|.+++...
T Consensus 240 g--------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 240 G--------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred C--------CHHHHHHHHHHhccCCEEEEEcc
Confidence 0 12468888999999999997653
No 426
>PRK08655 prephenate dehydrogenase; Provisional
Probab=23.46 E-value=3.8e+02 Score=27.41 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=52.3
Q ss_pred eEEEec-Cc-ch-HHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccC
Q 020011 184 NVMDMN-TL-YG-GFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRC 260 (332)
Q Consensus 184 ~VLD~G-CG-~G-gfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c 260 (332)
+|.=+| +| .| .++.+|.+.+..+ .+...+.+...+.+.+.|+.. ..+. ...-...|+|...--. .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V-~v~~r~~~~~~~~a~~~gv~~-~~~~----~e~~~~aDvVIlavp~------~ 69 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEV-IVTGRDPKKGKEVAKELGVEY-ANDN----IDAAKDADIVIISVPI------N 69 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEE-EEEECChHHHHHHHHHcCCee-ccCH----HHHhccCCEEEEecCH------H
Confidence 355566 45 45 3677777777532 233333333335565555421 1111 0111557888766211 2
Q ss_pred CHHHHHHHHHhhhcCCcEEEEEcC--hhHHHHHHHHH
Q 020011 261 DMKFVLLEMDRILRPNGYVIVRES--SYFIDAVATIA 295 (332)
Q Consensus 261 ~~~~iL~EmdRVLRPGG~lii~d~--~~~~~~i~~i~ 295 (332)
....++.++...++||..++-... ......+++..
T Consensus 70 ~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~ 106 (437)
T PRK08655 70 VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA 106 (437)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc
Confidence 345678888888888875554443 34556666654
No 427
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=23.37 E-value=1.4e+02 Score=26.62 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=35.4
Q ss_pred CCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEcChhHHHHHHHHH
Q 020011 241 PRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRESSYFIDAVATIA 295 (332)
Q Consensus 241 p~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~i~ 295 (332)
.++||+|.+.==| +...| ...+..-++-++||++.+++.....+...|+++.
T Consensus 84 ~~~~d~vv~DPPF--l~~ec-~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 84 KGKFDVVVIDPPF--LSEEC-LTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL 135 (162)
T ss_pred CCCceEEEECCCC--CCHHH-HHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh
Confidence 3899999998333 22112 2344455666668999999999887777777766
No 428
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.32 E-value=1.7e+02 Score=27.92 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=49.2
Q ss_pred CCeEEEecCc-chHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCcccccc----cccccCCCC-C-CccceeEehhh
Q 020011 182 IRNVMDMNTL-YGGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTYH----DWCEAFSTY-P-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG-~Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~----d~~e~~~~y-p-~sFDlVh~s~v 252 (332)
..+||=.|+| .|.+++.+++ .|+.. ++.++. ++.+..+.+-|....+. ++.+....+ + +.+|+|.-..
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~--v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~- 243 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGR--IIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAG- 243 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCe--EEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECC-
Confidence 4567777765 3334444444 35521 333444 55666776666422111 111111112 2 5688877431
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.-...+.++.+.|+++|.++...
T Consensus 244 --------g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 --------GGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred --------CCHHHHHHHHHHhhcCCEEEEec
Confidence 11357899999999999998654
No 429
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=23.14 E-value=3e+02 Score=25.68 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=49.8
Q ss_pred CCeEEEecC--cchHHHHHHhc-C-CCeEEEEeecCchhhHHHHHhcCccccc---ccccccCCCCC-CccceeEehhhh
Q 020011 182 IRNVMDMNT--LYGGFAAAVID-D-PLWVMNVVSSYAANTLAVVYDRGLIGTY---HDWCEAFSTYP-RTYDLLHLDGLF 253 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~-~-~v~vmnv~p~d~~~~l~~a~eRGlig~~---~d~~e~~~~yp-~sFDlVh~s~vf 253 (332)
..+||=.|+ +.|.++..+++ . |+.++.++.. ++..+++.+-|.--.+ .++.+.+.... +.+|+|.-. +
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~--~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~-~- 224 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR--PESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSL-T- 224 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc--HHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEc-C-
Confidence 456776664 56667666666 3 6654433322 4455666554531111 11111111123 568877632 1
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.-...+.++.+.|+++|.++...
T Consensus 225 -------~~~~~~~~~~~~l~~~G~~v~~~ 247 (336)
T TIGR02817 225 -------HTDQHFKEIVELLAPQGRFALID 247 (336)
T ss_pred -------CcHHHHHHHHHHhccCCEEEEEc
Confidence 11357889999999999998753
No 430
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=22.74 E-value=2.7e+02 Score=25.81 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=49.1
Q ss_pred CCeEEEecC--cchHHHHHHhc-CCCeEEEEeecCchhhHHHHHhcCcccc--ccc-ccccCCCCC-CccceeEehhhhc
Q 020011 182 IRNVMDMNT--LYGGFAAAVID-DPLWVMNVVSSYAANTLAVVYDRGLIGT--YHD-WCEAFSTYP-RTYDLLHLDGLFT 254 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~-~~v~vmnv~p~d~~~~l~~a~eRGlig~--~~d-~~e~~~~yp-~sFDlVh~s~vf~ 254 (332)
..+||=.|+ +.|.+++.+++ .|..++.++.. ++..+++.+-|.--. .++ ..+.+..++ +.+|+|...
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~---- 220 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK--ADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDP---- 220 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC--HHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEEC----
Confidence 357777776 44555555554 46644333222 455666666554111 111 011122233 567876532
Q ss_pred cccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 255 AESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 255 h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. ...+.++.+.|+++|.++...
T Consensus 221 -~g-----~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 221 -VG-----GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred -Cc-----HHHHHHHHHHhhcCCEEEEEe
Confidence 11 246788999999999998864
No 431
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.67 E-value=1.2e+02 Score=29.63 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHH----HhcCc--cccc---------ccccccCCC--
Q 020011 177 LGTDKIRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVV----YDRGL--IGTY---------HDWCEAFST-- 239 (332)
Q Consensus 177 l~~~~~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a----~eRGl--ig~~---------~d~~e~~~~-- 239 (332)
+..+ ++.|+=+|||.=+-+-.|-... .+.+-.+|.|+.+++= .++|. ++.+ .||++++..
T Consensus 89 ~~~g-~~qvViLgaGLDTRayRl~~~~--~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G 165 (297)
T COG3315 89 LDAG-IRQVVILGAGLDTRAYRLDWPK--GTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAG 165 (297)
T ss_pred HHhc-ccEEEEeccccccceeecCCCC--CCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcC
Confidence 4455 8999999999998887775543 3467888887777543 33342 1112 455555432
Q ss_pred CC-CccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 240 YP-RTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 240 yp-~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
|+ ..-=++.+-.+|.|++. ..+..+|.-+.-.+.||=.++..-
T Consensus 166 ~d~~~pt~~iaEGLl~YL~~-~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 166 FDRSRPTLWIAEGLLMYLPE-EAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCcCCCeEEEeccccccCCH-HHHHHHHHHHHHhCCCCceEEEec
Confidence 55 55668899999999984 456677777777777777777664
No 432
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.45 E-value=2.1e+02 Score=27.42 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=51.0
Q ss_pred CCeEEEecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHH-----------HHhcCcccc--cccccccC---CCCCC
Q 020011 182 IRNVMDMNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAV-----------VYDRGLIGT--YHDWCEAF---STYPR 242 (332)
Q Consensus 182 ~r~VLD~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~-----------a~eRGlig~--~~d~~e~~---~~yp~ 242 (332)
+++|==+|+|+ +++|..|+..|. .|+-.|. ++.++. ..++|..-. ....-+.+ ..+.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~- 80 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV---DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG- 80 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH-
Confidence 45677788885 357777777776 3344444 444433 344443210 00000111 1122
Q ss_pred ccceeEehhhhccccccCCH-HHHHHHHHhhh-cCCcEEEEEcChhHHHHHH
Q 020011 243 TYDLLHLDGLFTAESHRCDM-KFVLLEMDRIL-RPNGYVIVRESSYFIDAVA 292 (332)
Q Consensus 243 sFDlVh~s~vf~h~~~~c~~-~~iL~EmdRVL-RPGG~lii~d~~~~~~~i~ 292 (332)
++--|..|++-+++.-++ ..++.++..++ +||-.|+.....-.+..+.
T Consensus 81 --~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la 130 (286)
T PRK07819 81 --DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA 130 (286)
T ss_pred --HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 122333444444433223 25889999999 7776665544443333333
No 433
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=22.42 E-value=1.9e+02 Score=27.83 Aligned_cols=91 Identities=14% Similarity=-0.053 Sum_probs=49.9
Q ss_pred CCeEEEecCcc-hHHHHHHhc-CCCeEEEEeecCc-hhhHHHHHhcCccccc--c--cccccCCCC-C-CccceeEehhh
Q 020011 182 IRNVMDMNTLY-GGFAAAVID-DPLWVMNVVSSYA-ANTLAVVYDRGLIGTY--H--DWCEAFSTY-P-RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~-Ggfaa~L~~-~~v~vmnv~p~d~-~~~l~~a~eRGlig~~--~--d~~e~~~~y-p-~sFDlVh~s~v 252 (332)
..+||=.|||. |.++..+++ .|.. .|..++. ++.++++.+-|..-.+ + ++.+.+... + +.+|+|.-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~--~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~-- 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGAS--KIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA-- 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC--
Confidence 46788888743 334444444 3542 1344444 6677777766642111 1 111111111 2 457877633
Q ss_pred hccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 253 FTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 253 f~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. -...+.+.-+.||+||.+++..
T Consensus 253 ---~g----~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 253 ---VG----RPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred ---CC----CHHHHHHHHHHhccCCEEEEEC
Confidence 11 1246778889999999999765
No 434
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=22.41 E-value=3.7e+02 Score=24.77 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=49.0
Q ss_pred chH-HHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccc--ccc--cc--ccCC-CCC-CccceeEehhhhccccccCCH
Q 020011 192 YGG-FAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGT--YHD--WC--EAFS-TYP-RTYDLLHLDGLFTAESHRCDM 262 (332)
Q Consensus 192 ~Gg-faa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~--~~d--~~--e~~~-~yp-~sFDlVh~s~vf~h~~~~c~~ 262 (332)
.|+ ||++|.+.|.-| .+. +..+.++.+.+.|+.-. -.+ .. .... +-+ ..||+|... .+ .-..
T Consensus 2 iG~~~a~~L~~~G~~V-~l~--~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~-----vK-s~~~ 72 (293)
T TIGR00745 2 VGSLYGAYLARAGHDV-TLL--ARGEQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIIT-----VK-AYQT 72 (293)
T ss_pred chHHHHHHHHhCCCcE-EEE--ecHHHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEe-----cc-chhH
Confidence 354 667777766522 233 33345566666675210 000 00 0001 112 568988776 12 1245
Q ss_pred HHHHHHHHhhhcCCcEEEEEc-ChhHHHHHHHH
Q 020011 263 KFVLLEMDRILRPNGYVIVRE-SSYFIDAVATI 294 (332)
Q Consensus 263 ~~iL~EmdRVLRPGG~lii~d-~~~~~~~i~~i 294 (332)
+.++..+...|.++..+++.- .....+.+.+.
T Consensus 73 ~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~ 105 (293)
T TIGR00745 73 EEAAALLLPLIGKNTKVLFLQNGLGHEERLREL 105 (293)
T ss_pred HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHH
Confidence 678999999999988776533 22334444443
No 435
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=22.31 E-value=1.9e+02 Score=31.62 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=56.8
Q ss_pred CCCCeEEEecCcc--hHHHHHHh-cCCCeEEEEeecCc-hhhHHHH-----------HhcCccccc-ccccccCCCCCCc
Q 020011 180 DKIRNVMDMNTLY--GGFAAAVI-DDPLWVMNVVSSYA-ANTLAVV-----------YDRGLIGTY-HDWCEAFSTYPRT 243 (332)
Q Consensus 180 ~~~r~VLD~GCG~--Ggfaa~L~-~~~v~vmnv~p~d~-~~~l~~a-----------~eRGlig~~-~d~~e~~~~yp~s 243 (332)
..+++|-=+|+|+ .++|..++ ..|.- |+-+|. ++.++.+ .++|.+... .+-......+-.+
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~G~~---V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 383 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKAGLP---VRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTD 383 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCC
Confidence 3578899999998 46777667 55653 333333 3333332 233332210 0000001111111
Q ss_pred c-ceeEehhhhccccccCCH-HHHHHHHHhhhcCCcEEEEEcChhHHHHHHH
Q 020011 244 Y-DLLHLDGLFTAESHRCDM-KFVLLEMDRILRPNGYVIVRESSYFIDAVAT 293 (332)
Q Consensus 244 F-DlVh~s~vf~h~~~~c~~-~~iL~EmdRVLRPGG~lii~d~~~~~~~i~~ 293 (332)
+ ++--|..|++-++..-++ ..++.|++++++|+-.|......-.+.+|.+
T Consensus 384 ~~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~ 435 (708)
T PRK11154 384 YRGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA 435 (708)
T ss_pred hHHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH
Confidence 1 233445555544422222 3699999999999977776555444455444
No 436
>PRK06545 prephenate dehydrogenase; Validated
Probab=22.29 E-value=3.8e+02 Score=26.41 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=49.9
Q ss_pred eEEEecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccC
Q 020011 184 NVMDMNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRC 260 (332)
Q Consensus 184 ~VLD~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c 260 (332)
+|.=+|+|. |+++.+|.+.+.-+ .+...+. ...+..+...|.+... .......-...|+|+.+ ++. .
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v-~i~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~aDlVila-----vP~-~ 71 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDV-FIIGYDPSAAQLARALGFGVIDEL---AADLQRAAAEADLIVLA-----VPV-D 71 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHhcCCCCccc---ccCHHHHhcCCCEEEEe-----CCH-H
Confidence 344566654 45777777776422 3444544 3333333322333211 01111111567888776 232 2
Q ss_pred CHHHHHHHHHhh-hcCCcEEEEEc--ChhHHHHHHHH
Q 020011 261 DMKFVLLEMDRI-LRPNGYVIVRE--SSYFIDAVATI 294 (332)
Q Consensus 261 ~~~~iL~EmdRV-LRPGG~lii~d--~~~~~~~i~~i 294 (332)
.+..++.++... |+||-.+.-.. ...+++.++.+
T Consensus 72 ~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 72 ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence 456788888874 88884332211 33455555555
No 437
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.20 E-value=3.2e+02 Score=24.94 Aligned_cols=90 Identities=18% Similarity=0.079 Sum_probs=49.6
Q ss_pred CCeEEEecC--cchHHHHHHhc-CCCeEEEEeecCchhhHHHHHhcCcccccc---cccccCCCCCCccceeEehhhhcc
Q 020011 182 IRNVMDMNT--LYGGFAAAVID-DPLWVMNVVSSYAANTLAVVYDRGLIGTYH---DWCEAFSTYPRTYDLLHLDGLFTA 255 (332)
Q Consensus 182 ~r~VLD~GC--G~Ggfaa~L~~-~~v~vmnv~p~d~~~~l~~a~eRGlig~~~---d~~e~~~~yp~sFDlVh~s~vf~h 255 (332)
..+||=.|+ +.|.++..+++ .|..++.++.. ++..+++.+.|..-.+. +..+.+..+.+.+|++...
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~----- 215 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKALGATVTATTRS--PERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLEL----- 215 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHhcCCcEEEecCccHHHHHHHhCCCceEEEEC-----
Confidence 456776775 45556655554 46654433332 44556666556411111 1111111124568877643
Q ss_pred ccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 256 ESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 256 ~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
.. ...+.++.+.|+++|.++...
T Consensus 216 ~~-----~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 216 VG-----TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred CC-----hHHHHHHHHHhccCCEEEEEc
Confidence 11 246888899999999998754
No 438
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=21.84 E-value=65 Score=28.20 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=19.7
Q ss_pred CCCccceeEehhhhccccccCCHHHHHHHHHhhhcCCcEEEEEc
Q 020011 240 YPRTYDLLHLDGLFTAESHRCDMKFVLLEMDRILRPNGYVIVRE 283 (332)
Q Consensus 240 yp~sFDlVh~s~vf~h~~~~c~~~~iL~EmdRVLRPGG~lii~d 283 (332)
++++||++|..|+ .+|.....+ |..|++.-
T Consensus 7 ~~G~FD~~H~GHi-----------~~L~~A~~l---gd~liVgV 36 (152)
T cd02173 7 VDGAFDLFHIGHI-----------EFLEKAREL---GDYLIVGV 36 (152)
T ss_pred EcCcccCCCHHHH-----------HHHHHHHHc---CCEEEEEE
Confidence 4699999999843 345444443 66777644
No 439
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=21.64 E-value=1.1e+02 Score=27.70 Aligned_cols=18 Identities=33% Similarity=0.772 Sum_probs=14.6
Q ss_pred EEEeeceecCCceEEecc
Q 020011 12 LLEVHRILRPGGFWVLSG 29 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ 29 (332)
+-++-|+|+|||.+++.-
T Consensus 200 i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 200 IAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHhcccCCEEEEEE
Confidence 346778999999999864
No 440
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=21.43 E-value=47 Score=32.47 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=26.4
Q ss_pred ccceeEehhhhccccccCCHHHH-HHHHHhhhcCCcEEEEEcCh
Q 020011 243 TYDLLHLDGLFTAESHRCDMKFV-LLEMDRILRPNGYVIVRESS 285 (332)
Q Consensus 243 sFDlVh~s~vf~h~~~~c~~~~i-L~EmdRVLRPGG~lii~d~~ 285 (332)
-||+|-++....... ....+ +.+..+.+++.|.+..-...
T Consensus 196 ~ydlIlsSetiy~~~---~~~~~~~~~r~~l~~~D~~~~~aAK~ 236 (282)
T KOG2920|consen 196 HYDLILSSETIYSID---SLAVLYLLHRPCLLKTDGVFYVAAKK 236 (282)
T ss_pred chhhhhhhhhhhCcc---hhhhhHhhhhhhcCCccchhhhhhHh
Confidence 577777775554332 22233 77888899999988776544
No 441
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=21.42 E-value=25 Score=34.84 Aligned_cols=16 Identities=38% Similarity=1.014 Sum_probs=13.9
Q ss_pred eeceecCCceEEeccC
Q 020011 15 VHRILRPGGFWVLSGP 30 (332)
Q Consensus 15 ~dRvLRpgGy~v~s~p 30 (332)
|-..||||||||-+-|
T Consensus 172 vs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 172 VSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHTEEEEEEEEEEEE
T ss_pred HHHhcCCCCEEEEEec
Confidence 4568999999999988
No 442
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=21.17 E-value=44 Score=33.91 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=16.4
Q ss_pred EEEeeceecCCceEEeccCCc
Q 020011 12 LLEVHRILRPGGFWVLSGPPV 32 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~ppv 32 (332)
|-++=++|+|||++|+|---+
T Consensus 355 L~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 355 LDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHHHHHhcCCCCEEEEEeCCC
Confidence 445667899999999987644
No 443
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=20.96 E-value=30 Score=34.49 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=16.0
Q ss_pred EEEeeceecCCceEEeccC
Q 020011 12 LLEVHRILRPGGFWVLSGP 30 (332)
Q Consensus 12 l~E~dRvLRpgGy~v~s~p 30 (332)
|-|+-|+|+|||.+++.++
T Consensus 198 L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 198 IKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred HHHHHHhcCCCcEEEEEEe
Confidence 4578899999999998775
No 444
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=20.78 E-value=36 Score=28.46 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=10.7
Q ss_pred EEEecCcchHHHHH
Q 020011 185 VMDMNTLYGGFAAA 198 (332)
Q Consensus 185 VLD~GCG~Ggfaa~ 198 (332)
-+|+|||-|....+
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 36999999976544
No 445
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=20.59 E-value=32 Score=32.73 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=13.3
Q ss_pred EEEEeeceecCCceEEe
Q 020011 11 YLLEVHRILRPGGFWVL 27 (332)
Q Consensus 11 ~l~E~dRvLRpgGy~v~ 27 (332)
+|-++.|+|+||||+++
T Consensus 205 ~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 205 IIKNMQEHTNPGGYNLI 221 (287)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 34577899999999665
No 446
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=20.56 E-value=3.6e+02 Score=25.45 Aligned_cols=96 Identities=10% Similarity=-0.041 Sum_probs=47.9
Q ss_pred ecCcc--hHHHHHHhcCCCeEEEEeecCc-hhhHHHHHhcCcccccccccccCCCCCCccceeEehhhhccccccCCHHH
Q 020011 188 MNTLY--GGFAAAVIDDPLWVMNVVSSYA-ANTLAVVYDRGLIGTYHDWCEAFSTYPRTYDLLHLDGLFTAESHRCDMKF 264 (332)
Q Consensus 188 ~GCG~--Ggfaa~L~~~~v~vmnv~p~d~-~~~l~~a~eRGlig~~~d~~e~~~~yp~sFDlVh~s~vf~h~~~~c~~~~ 264 (332)
+|+|. +.++..|.+.+. +|...|. ++.++...+.|.... .....--+.-|+|+.. +++......
T Consensus 2 IGlG~mG~~mA~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~-----~s~~~~~~~advVil~-----vp~~~~~~~ 68 (288)
T TIGR01692 2 IGLGNMGGPMAANLLKAGH---PVRVFDLFPDAVEEAVAAGAQAA-----ASPAEAAEGADRVITM-----LPAGQHVIS 68 (288)
T ss_pred CcccHhHHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHcCCeec-----CCHHHHHhcCCEEEEe-----CCChHHHHH
Confidence 35554 246677777775 2333444 445555555554211 1100011456877766 443333455
Q ss_pred HH---HHHHhhhcCCcEEEEEcCh--hHHHHHHHHHh
Q 020011 265 VL---LEMDRILRPNGYVIVRESS--YFIDAVATIAK 296 (332)
Q Consensus 265 iL---~EmdRVLRPGG~lii~d~~--~~~~~i~~i~~ 296 (332)
++ .++..-++||-.+|..... +...++.+.++
T Consensus 69 v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~ 105 (288)
T TIGR01692 69 VYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAA 105 (288)
T ss_pred HHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHH
Confidence 65 4565567777666554432 34555555543
No 447
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=20.50 E-value=1.8e+02 Score=20.46 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcccceeeeecceEEEeecCCC
Q 020011 52 YKKLQDLLTSMCFKLYAKKDDIAVWQKLSDS 82 (332)
Q Consensus 52 ~~~~~~l~~~~cw~~~~~~~~~aiw~Kp~~~ 82 (332)
|++|..+.+++-|+....++.=.+|++|...
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGGR 31 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCCC
Confidence 6789999999999999888899999999775
No 448
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=20.30 E-value=1.4e+02 Score=29.29 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.6
Q ss_pred CHHHHHHHHHhhhcCCcEEEEEcChhHHHH
Q 020011 261 DMKFVLLEMDRILRPNGYVIVRESSYFIDA 290 (332)
Q Consensus 261 ~~~~iL~EmdRVLRPGG~lii~d~~~~~~~ 290 (332)
.++.+|...-.+|+|||.+++..-+..-++
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlEDr 243 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLEDR 243 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence 345799999999999999999887654333
No 449
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=20.24 E-value=84 Score=28.68 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHh-cccceeeeecceEEEeecCCCh
Q 020011 44 TIEEQRSDYKKLQDLLTS-MCFKLYAKKDDIAVWQKLSDSS 83 (332)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~-~cw~~~~~~~~~aiw~Kp~~~~ 83 (332)
+++++..-|++++..+.. =.|+++.+++++.||+++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~W~l~~~~~~i~Vy~r~~~~s 46 (207)
T cd08910 6 SEEQFREACAELQQPALDGAAWELLVESSGISIYRLLDEQS 46 (207)
T ss_pred CHHHHHHHHHHhcCCCCCCCCeEEEEecCCeEEEEeccCCC
Confidence 567777778777755555 6799999999999999976533
No 450
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=20.17 E-value=4.7e+02 Score=25.07 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=54.8
Q ss_pred eEEEecCcc-hH-HHHHHhcCCCeEEEEeecCc-hhhHHHHHh-cCcc----cccccccc-cCCCCC-CccceeEehhhh
Q 020011 184 NVMDMNTLY-GG-FAAAVIDDPLWVMNVVSSYA-ANTLAVVYD-RGLI----GTYHDWCE-AFSTYP-RTYDLLHLDGLF 253 (332)
Q Consensus 184 ~VLD~GCG~-Gg-faa~L~~~~v~vmnv~p~d~-~~~l~~a~e-RGli----g~~~d~~e-~~~~yp-~sFDlVh~s~vf 253 (332)
+|+=+|||- |+ ||++|.+.|. +|+-++. .+.++.+.. +|+. |....+-- ...+-+ ..||+|...
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~--- 77 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA--- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEE---
Confidence 577788774 55 6777777765 3343444 446665654 4652 11110000 001112 578988765
Q ss_pred ccccccCCHHHHHHHHHhhhcCCcEEEE-EcChhHHHHHHHH
Q 020011 254 TAESHRCDMKFVLLEMDRILRPNGYVIV-RESSYFIDAVATI 294 (332)
Q Consensus 254 ~h~~~~c~~~~iL~EmdRVLRPGG~lii-~d~~~~~~~i~~i 294 (332)
.+ --+.+.++..+...|.|+..++. ..-....+.+.+.
T Consensus 78 --vK-~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~ 116 (305)
T PRK05708 78 --CK-AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAAR 116 (305)
T ss_pred --CC-HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHh
Confidence 11 12346788899999999886644 3333434444444
No 451
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=20.16 E-value=1.1e+02 Score=30.18 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCeEEEecCcchHHHHHHhcCCCeEEEEeecCchhhHHHHHhcCcccccccccccCCCCC--CccceeEehhh
Q 020011 182 IRNVMDMNTLYGGFAAAVIDDPLWVMNVVSSYAANTLAVVYDRGLIGTYHDWCEAFSTYP--RTYDLLHLDGL 252 (332)
Q Consensus 182 ~r~VLD~GCG~Ggfaa~L~~~~v~vmnv~p~d~~~~l~~a~eRGlig~~~d~~e~~~~yp--~sFDlVh~s~v 252 (332)
.-...|+|+-.||.+-.|.+++.+| ..+|..-+.+-..+.|++... -.+.|-.-| +..|-..|..|
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr~m~V---~aVDng~ma~sL~dtg~v~h~--r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKRNMRV---YAVDNGPMAQSLMDTGQVTHL--REDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred CceeeecccCCCccchhhhhcceEE---EEeccchhhhhhhcccceeee--eccCcccccCCCCCceEEeehh
Confidence 3458899999999999999998755 556664455666667776422 223344445 77999999865
Done!