Your job contains 1 sequence.
>020012
MMYSLRRVMAQIGRSQTTVKRIILYSPAHFTRPFSSRAHQFTKATTKTTTSKDVVWPKPS
EIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI
ASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQKRMFFVSKKQEAATV
DHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWL
NSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPVLDDQTQKSNYVKK
SKVDDLWKDLVENPDKWWDNRLDKVILYNLCF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020012
(332 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006672 - symbol:OSB3 "organellar single-str... 476 1.1e-56 2
TAIR|locus:2119767 - symbol:PTAC9 "plastid transcriptiona... 534 1.9e-51 1
TAIR|locus:2015721 - symbol:OSB4 "organellar single-stran... 326 5.1e-37 2
TAIR|locus:2015353 - symbol:OSB1 "Organellar Single-stran... 202 4.1e-16 1
>TAIR|locus:505006672 [details] [associations]
symbol:OSB3 "organellar single-stranded DNA binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000424 PROSITE:PS50935 GO:GO:0005739 EMBL:CP002688
GO:GO:0009507 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 IPI:IPI00535730 RefSeq:NP_974885.1 UniGene:At.19937
ProteinModelPortal:F4KBP3 PRIDE:F4KBP3 EnsemblPlants:AT5G44785.2
GeneID:834508 KEGG:ath:AT5G44785 OMA:EISNWIN Uniprot:F4KBP3
Length = 442
Score = 476 (172.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 102/246 (41%), Positives = 151/246 (61%)
Query: 59 PSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGD 116
P +I ++ +++N +NLIG V+ PVQF SDGK WAGTVI Q + S S WIPI+FEGD
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 117 LAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLNLIEPTSQKRMFFVSK 173
LA IA H+KK+D +H++G+L D PP + Q+NVQVMV +LN ++ +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 174 KQEAATVDHSVKISSSKKDGDSALS-SWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRK 232
++E ++ S K D S SW+ L++NP++W D+R +K GLVKP +PDFK K
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFKMK 250
Query: 233 DGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKS--KGVVFDKSKPVLDD 290
G L LWL++APDW L +LE + FD P + + + + + K +V + K LD+
Sbjct: 251 VGGLSLWLSTAPDWALLKLEELKFDVLVPKGNIKLNQLKDIGEESWKDLVQNPDK-WLDN 309
Query: 291 QTQKSN 296
++ K+N
Sbjct: 310 RSDKTN 315
Score = 158 (60.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 35/97 (36%), Positives = 58/97 (59%)
Query: 183 SVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNS 242
++K++ K G+ SW+DL+ NP++W D RSDK VK YPDFK K+ LW+ +
Sbjct: 282 NIKLNQLKDIGEE---SWKDLVQNPDKWLDNRSDKTN--VK--YPDFKHKETGEALWMTN 334
Query: 243 APDWVLSELEGVVFDKSKPVLDDQTRKSNY-VKKSKG 278
+P WVLS+L + ++ +P + ++ + V+ KG
Sbjct: 335 SPIWVLSKLPPLKKNQERPFMSNKVSQLELDVEVPKG 371
Score = 134 (52.2 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 32/100 (32%), Positives = 54/100 (54%)
Query: 164 SQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVK 223
+Q+R F +S K +D V + K+ + W++L++NP +W D R DK
Sbjct: 349 NQERPF-MSNKVSQLELDVEVPKGNLKQLKREEI--WKNLVENPSKWWDNRLDKRN---- 401
Query: 224 PRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVL 263
P+ PDFK K+ LW+ +P W LS+L + ++ +PV+
Sbjct: 402 PKGPDFKHKETGEALWIGDSPTWALSKLPPLKKNQERPVM 441
Score = 125 (49.1 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 288 LDDQTQKSNYVKKSKVDDLWKDLVENPDKWWDNRLDK 324
LD + K N +K+ K +++WK+LVENP KWWDNRLDK
Sbjct: 364 LDVEVPKGN-LKQLKREEIWKNLVENPSKWWDNRLDK 399
Score = 39 (18.8 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 151 QVMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQ 209
Q+ V S +I +K + VS K K + +S+W +L+ EQ
Sbjct: 34 QIRVFSATVISGGGKKPLAKVSVKPPLNVATEKESTPPKKIEYKPEISNWINLIGFVEQ 92
>TAIR|locus:2119767 [details] [associations]
symbol:PTAC9 "plastid transcriptionally active 9"
species:3702 "Arabidopsis thaliana" [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] InterPro:IPR000424 PROSITE:PS50935 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL021637 EMBL:AL161552
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AK118242 EMBL:BT026461 IPI:IPI00529933 IPI:IPI00656999
PIR:T04885 RefSeq:NP_001031674.1 RefSeq:NP_567593.1 UniGene:At.1899
ProteinModelPortal:Q8GXH3 SMR:Q8GXH3 STRING:Q8GXH3 PaxDb:Q8GXH3
PRIDE:Q8GXH3 EnsemblPlants:AT4G20010.1 GeneID:827746
KEGG:ath:AT4G20010 TAIR:At4g20010 eggNOG:NOG326142
HOGENOM:HOG000114724 InParanoid:O49428 OMA:PNEIAYE PhylomeDB:Q8GXH3
ProtClustDB:CLSN2688130 Genevestigator:Q8GXH3 GO:GO:0009508
Uniprot:Q8GXH3
Length = 371
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 113/230 (49%), Positives = 150/230 (65%)
Query: 57 PKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFE 114
P+P+EI ++ +VAN VNLIG VD PVQF+ SSDGK WAGTVI Q +AS S WIPI+FE
Sbjct: 86 PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFWIPIIFE 145
Query: 115 GDLAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLNLIEPTSQKRM-FF 170
GDLA A+ ++ KDD +H++G+L D PP + QANVQV+V +LN I+P S F
Sbjct: 146 GDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPSPFM 205
Query: 171 VSKKQEAATVDHSVKISSSKKDG--DSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPD 228
V E + + +K+D D A SW L++NP++W D+R +K+ GLVKPR+PD
Sbjct: 206 VMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPD 265
Query: 229 FKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNYVKKSKG 278
FK KD + LWLN AP+WVL +LEG+ FD P K+ VK+ KG
Sbjct: 266 FKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVP-------KARVVKQLKG 308
Score = 132 (51.5 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 199 SWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGV 254
SW+DL+ NP++W D R DK + PDFK K+ LWLN +P WVL +L V
Sbjct: 311 SWKDLVQNPDKWWDNRIDKRNA----KAPDFKHKETGEALWLNESPTWVLPKLPPV 362
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 249 SELEGVVFDKSKPVLDDQTRKSNYVKKSKGVVFDKSKPV-LDDQTQKSNYVKKSKVDDLW 307
+++ G+V + + S ++ K+ V K + + D K+ VK+ K ++ W
Sbjct: 253 NKVNGLVKPRHPDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVPKARVVKQLKGEESW 312
Query: 308 KDLVENPDKWWDNRLDK 324
KDLV+NPDKWWDNR+DK
Sbjct: 313 KDLVQNPDKWWDNRIDK 329
>TAIR|locus:2015721 [details] [associations]
symbol:OSB4 "organellar single-stranded DNA binding
protein 4" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC000107
HOGENOM:HOG000114724 ProtClustDB:CLSN2688130 EMBL:AY086580
IPI:IPI00528208 PIR:G86435 RefSeq:NP_564370.1 UniGene:At.40440
ProteinModelPortal:Q9FYJ2 SMR:Q9FYJ2 PaxDb:Q9FYJ2 PRIDE:Q9FYJ2
EnsemblPlants:AT1G31010.1 GeneID:839987 KEGG:ath:AT1G31010
TAIR:At1g31010 eggNOG:NOG304474 InParanoid:Q9FYJ2 OMA:VISHEPS
PhylomeDB:Q9FYJ2 Genevestigator:Q9FYJ2 Uniprot:Q9FYJ2
Length = 360
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 86/234 (36%), Positives = 124/234 (52%)
Query: 103 ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD---PPAIEGQANVQ-------- 151
+S + WIP+LFEGDLAH A+S+LKK+D VHI GQ+ D A QA+VQ
Sbjct: 115 SSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGS 174
Query: 152 ----VMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNP 207
VMV L+ IE + + Q + HS + ++ G + W DL+D P
Sbjct: 175 FSHQVMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTNL---WFDLVDKP 231
Query: 208 EQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQT 267
+W DYR K G V P++PDFK+KDG+ LWLN+AP +LSEL+ V FD K +
Sbjct: 232 NEWCDYREMKQNGSVNPKHPDFKKKDGSQALWLNNAPTEILSELKDVKFDIPKYAKQPKA 291
Query: 268 RKSNYVKKSKGVVFDKSK---PVLDDQTQKS-NYVKKSKVDDLWKDLVENPDKW 317
+ ++ K +V + +K +D +T KS ++ K LW L ++P W
Sbjct: 292 GEESW----KDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLW--LSDSPS-W 338
Score = 280 (103.6 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 57/109 (52%), Positives = 74/109 (67%)
Query: 56 WPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--------- 106
WP+P E+P+Q K+ANS++LIG+V PVQF ++ DGK WAGTVI +S S
Sbjct: 59 WPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSN 118
Query: 107 LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD---PPAIEGQANVQV 152
WIP+LFEGDLAH A+S+LKK+D VHI GQ+ D A QA+VQ+
Sbjct: 119 FWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQL 167
Score = 134 (52.2 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 185 KISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAP 244
K + K G+ SW+DL+DN +W D R DK P+ PDFK K+ + LWL+ +P
Sbjct: 284 KYAKQPKAGEE---SWKDLVDNMNKWWDNRVDKRT----PKSPDFKHKETGVGLWLSDSP 336
Query: 245 DWVLSEL 251
WVL +L
Sbjct: 337 SWVLEKL 343
Score = 103 (41.3 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 297 YVKKSKV-DDLWKDLVENPDKWWDNRLDK 324
Y K+ K ++ WKDLV+N +KWWDNR+DK
Sbjct: 285 YAKQPKAGEESWKDLVDNMNKWWDNRVDK 313
Score = 65 (27.9 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 268 RKSNYVKKSKGVVFDKSKPVLDDQT---QKSNYVKKSKV--DDLWKDLVENPDKWWDNR 321
R +Y++ SK + K P LD + S V++ + +LW DLV+ P++W D R
Sbjct: 182 RDLHYIEGSKAM--PKVLPTLDQNEGVLKHSASVQRGREFGTNLWFDLVDKPNEWCDYR 238
>TAIR|locus:2015353 [details] [associations]
symbol:OSB1 "Organellar Single-stranded" species:3702
"Arabidopsis thaliana" [GO:0003697 "single-stranded DNA binding"
evidence=IEA;IDA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IMP] [GO:0048046
"apoplast" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0048046 GO:GO:0003697
GO:GO:0000002 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC012463
EMBL:AC007519 GO:GO:0045910 EMBL:BT005269 EMBL:AK119114
IPI:IPI00522831 RefSeq:NP_175203.2 UniGene:At.38566
ProteinModelPortal:Q9SX99 STRING:Q9SX99 EnsemblPlants:AT1G47720.1
GeneID:841183 KEGG:ath:AT1G47720 TAIR:At1g47720 eggNOG:NOG311682
HOGENOM:HOG000092997 InParanoid:Q9SX99 OMA:SAVYHHA PhylomeDB:Q9SX99
ProtClustDB:CLSN2918339 Genevestigator:Q9SX99 Uniprot:Q9SX99
Length = 261
Score = 202 (76.2 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 68/233 (29%), Positives = 107/233 (45%)
Query: 55 VWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVI-VQHAAS--HSLWIPI 111
++ KP + + NSV+L+G VD +Q + + T++ V+ + S I +
Sbjct: 41 LFKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISL 100
Query: 112 LFEGDLAHIASSHLKKDDHVHIAGQLTA----DPPAIEG-QANVQVMVHSLNLIE-PTSQ 165
+A +HLK +DH+ ++G+L + G + QV V +N + P S
Sbjct: 101 RMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSH 160
Query: 166 KRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPR 225
+SK + T D I SKKD + W+ NP W D R +K P+
Sbjct: 161 VLDSQISKNPKTKTEDD---IEESKKD---EIYLWQVFFSNPYDWWDNRRNKKN----PK 210
Query: 226 YPDFKRKDGTLPLWLNS-APDWVLSELEGVVFDKSKPVLDDQ-TRK---SNYV 273
PDFK KD LWL S PDW+ LE +FD+ D++ TR+ S+Y+
Sbjct: 211 QPDFKHKDTGEALWLCSDLPDWITRRLE--LFDQKNRFYDEEKTRRDRLSDYI 261
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 332 321 0.00085 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 620 (66 KB)
Total size of DFA: 242 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.25u 0.10s 27.35t Elapsed: 00:00:01
Total cpu time: 27.25u 0.10s 27.35t Elapsed: 00:00:01
Start: Fri May 10 20:11:42 2013 End: Fri May 10 20:11:43 2013