Query 020012
Match_columns 332
No_of_seqs 225 out of 1079
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3koj_A Uncharacterized protein 99.9 2E-27 6.8E-32 197.1 12.7 91 68-158 10-107 (108)
2 3vdy_A SSB, single-stranded DN 99.9 5.7E-27 1.9E-31 194.0 14.2 100 67-166 3-112 (116)
3 3ull_A DNA binding protein; DN 99.9 2.1E-26 7.1E-31 195.1 11.3 102 65-166 10-130 (132)
4 2vw9_A Single-stranded DNA bin 99.9 3.5E-26 1.2E-30 194.8 11.9 98 68-165 1-110 (134)
5 3ulp_A Single-strand binding p 99.9 9.5E-26 3.3E-30 189.0 13.2 99 67-165 4-122 (124)
6 1z9f_A Single-strand binding p 99.9 1E-25 3.4E-30 196.5 13.4 99 68-166 15-125 (153)
7 1txy_A Primosomal replication 99.9 4E-26 1.4E-30 186.4 9.1 94 68-163 1-103 (104)
8 1qvc_A Single stranded DNA bin 99.9 2E-25 7E-30 192.3 12.8 100 67-166 3-118 (145)
9 3tqy_A Single-stranded DNA-bin 99.9 2.7E-25 9.2E-30 194.5 13.4 101 65-165 4-117 (158)
10 1v1q_A Primosomal replication 99.9 2E-25 6.8E-30 191.6 10.1 98 68-166 18-123 (134)
11 3lgj_A Single-stranded DNA-bin 99.9 8.1E-25 2.8E-29 193.7 14.0 100 67-166 21-138 (169)
12 4gs3_A Single-stranded DNA-bin 99.9 1.2E-24 4.1E-29 180.5 10.1 91 69-161 11-106 (107)
13 3pgz_A Single-stranded DNA-bin 99.9 3E-24 1E-28 194.1 12.2 101 66-166 23-141 (193)
14 4dam_A Single-stranded DNA-bin 99.9 1.8E-24 6.1E-29 183.6 10.1 94 67-162 13-120 (128)
15 3afp_A Single-stranded DNA-bin 99.9 3E-24 1E-28 189.5 11.5 98 68-165 3-118 (168)
16 1eqq_A Single stranded DNA bin 99.9 8.2E-25 2.8E-29 194.9 6.0 99 67-165 4-118 (178)
17 3fhw_A Primosomal replication 99.9 8.1E-24 2.8E-28 177.3 10.9 93 69-165 1-101 (115)
18 3k7u_C MP18 RNA editing comple 99.9 1.2E-23 4E-28 183.1 12.0 97 67-165 4-119 (148)
19 3k81_C MP18 RNA editing comple 99.9 1.6E-23 5.5E-28 185.2 11.5 98 66-165 19-135 (164)
20 3k8a_A Putative primosomal rep 99.9 1.3E-23 4.4E-28 172.6 9.8 87 70-161 8-102 (103)
21 3eiv_A Single-stranded DNA-bin 99.9 8.1E-23 2.8E-27 185.5 14.6 94 69-162 4-111 (199)
22 2fxq_A Single-strand binding p 99.9 4.3E-23 1.5E-27 192.2 12.5 99 67-166 126-233 (264)
23 1se8_A Single-strand binding p 99.9 1.8E-22 6.1E-27 192.6 13.6 100 66-165 2-114 (301)
24 2fxq_A Single-strand binding p 99.9 9.2E-23 3.1E-27 190.0 11.3 98 67-164 3-111 (264)
25 1se8_A Single-strand binding p 99.9 9.7E-22 3.3E-26 187.5 12.4 98 67-165 127-236 (301)
26 3en2_A Probable primosomal rep 99.8 2.1E-21 7.1E-26 159.5 7.5 76 69-145 2-85 (101)
27 4dni_A Fusion protein of RNA-e 99.8 2.5E-20 8.4E-25 174.9 10.7 90 69-161 146-255 (257)
28 4dni_A Fusion protein of RNA-e 99.8 8.7E-19 3E-23 164.4 10.4 92 67-162 28-129 (257)
29 3stb_C RNA-editing complex pro 99.7 2.5E-17 8.6E-22 143.4 10.5 81 67-149 42-130 (148)
30 4dka_C RNA-editing complex pro 97.4 0.0013 4.4E-08 54.2 10.2 74 70-145 4-82 (105)
31 2k50_A Replication factor A re 96.6 0.0099 3.4E-07 47.8 8.5 71 70-145 17-91 (115)
32 3e0e_A Replication protein A; 96.4 0.015 5.1E-07 46.2 8.8 79 70-161 12-94 (97)
33 3dm3_A Replication factor A; p 96.2 0.027 9.3E-07 45.6 9.4 81 70-162 15-99 (105)
34 1o7i_A SSB, SSO2364, single st 95.1 0.056 1.9E-06 44.1 7.1 63 69-139 12-78 (119)
35 1ynx_A Replication factor-A pr 94.4 0.054 1.8E-06 44.0 5.3 64 69-136 14-80 (114)
36 2k75_A Uncharacterized protein 94.3 0.13 4.6E-06 41.4 7.4 60 69-139 13-75 (106)
37 2hql_A Hypothetical protein Mg 91.8 2.8 9.6E-05 33.9 11.4 85 67-157 6-96 (110)
38 3f2b_A DNA-directed DNA polyme 91.3 1.7 5.9E-05 47.7 13.0 87 67-162 15-103 (1041)
39 4gop_B Putative uncharacterize 89.9 1.8 6.2E-05 35.7 9.1 89 60-164 27-118 (136)
40 3kdf_D Replication protein A 3 89.5 2.1 7.3E-05 35.2 9.2 89 61-165 23-114 (132)
41 1jmc_A Protein (replication pr 86.6 1 3.5E-05 40.1 5.9 63 69-135 18-83 (246)
42 1eov_A ASPRS, aspartyl-tRNA sy 86.5 5.2 0.00018 40.2 11.6 86 70-164 37-131 (487)
43 2hpi_A DNA polymerase III alph 85.0 1.3 4.3E-05 49.6 6.7 79 71-161 1044-1122(1220)
44 4gop_C Putative uncharacterize 84.4 1.5 5.2E-05 42.9 6.4 64 69-136 13-79 (444)
45 1wjj_A Hypothetical protein F2 82.6 4.7 0.00016 34.5 8.0 61 69-137 26-99 (145)
46 2pi2_A Replication protein A 3 81.6 5.4 0.00018 36.7 8.6 56 104-165 96-154 (270)
47 3m4p_A Ehasnrs, asparaginyl-tR 80.9 5.9 0.0002 39.5 9.2 85 70-164 31-123 (456)
48 2xgt_A Asparaginyl-tRNA synthe 80.4 6.2 0.00021 38.9 9.1 82 71-162 13-96 (435)
49 3kf6_A Protein STN1; OB fold, 77.4 21 0.00072 30.7 10.5 88 64-166 42-132 (159)
50 1wyd_A Hypothetical aspartyl-t 77.4 9.4 0.00032 37.7 9.3 80 70-163 17-98 (429)
51 3bju_A Lysyl-tRNA synthetase; 77.3 8.7 0.0003 38.9 9.2 79 71-163 57-141 (521)
52 3au7_A TIAS, putative uncharac 76.7 11 0.00039 37.2 9.7 78 67-162 282-361 (402)
53 1x54_A Asparaginyl-tRNA synthe 76.3 11 0.00038 37.1 9.5 81 70-163 17-101 (434)
54 3kf8_A Protein STN1; OB fold; 76.0 11 0.00038 34.5 8.7 100 62-163 78-185 (220)
55 3nem_A Aspartyl-tRNA synthetas 76.0 19 0.00064 35.7 11.1 82 70-164 17-102 (438)
56 1n9w_A Aspartyl-tRNA synthetas 74.9 12 0.0004 36.9 9.2 74 70-163 14-88 (422)
57 1jmc_A Protein (replication pr 73.0 11 0.00039 33.2 7.9 67 71-142 140-210 (246)
58 3i7f_A Aspartyl-tRNA synthetas 72.6 18 0.00063 37.0 10.2 85 70-164 63-154 (548)
59 1c0a_A Aspartyl tRNA synthetas 68.1 19 0.00064 37.0 9.2 84 71-164 17-106 (585)
60 1l0w_A Aspartyl-tRNA synthetas 67.7 18 0.00061 37.1 9.0 84 71-164 18-104 (580)
61 3a74_A Lysyl-tRNA synthetase; 67.6 25 0.00084 35.4 9.8 78 71-163 58-139 (493)
62 2kbn_A Conserved protein; nucl 67.1 17 0.00059 28.9 7.0 61 69-139 15-76 (109)
63 1e1o_A Lysyl-tRNA synthetase, 63.5 27 0.00093 35.2 9.3 78 71-163 66-148 (504)
64 4ex5_A Lysine--tRNA ligase; st 59.5 41 0.0014 34.3 9.7 79 71-164 88-170 (529)
65 4hik_A Protection of telomeres 54.5 8.6 0.00029 32.8 3.3 27 108-134 66-92 (143)
66 2vl6_A SSO MCM N-TER, minichro 52.6 35 0.0012 30.9 7.2 53 105-161 209-266 (268)
67 4gop_C Putative uncharacterize 50.6 15 0.00051 35.8 4.7 69 71-144 135-211 (444)
68 4hsp_A Hypothetical protein; P 43.6 20 0.00067 31.0 3.8 85 67-160 51-145 (150)
69 4ah6_A Aspartate--tRNA ligase, 41.4 1E+02 0.0036 31.9 9.5 82 70-164 25-114 (617)
70 1gm5_A RECG; helicase, replica 32.6 28 0.00097 36.8 3.7 62 70-139 166-229 (780)
71 1xjv_A Protection of telomeres 31.7 53 0.0018 30.2 5.0 73 69-145 15-87 (294)
72 1ltl_A DNA replication initiat 31.4 60 0.0021 29.7 5.3 51 106-161 197-248 (279)
73 4fa8_A Secreted protein BARF1; 30.0 40 0.0014 28.5 3.6 102 21-138 100-202 (203)
74 4eh1_A Flavohemoprotein; struc 28.1 1.1E+02 0.0036 26.2 6.0 27 115-141 83-109 (243)
75 3ebe_A Protein MCM10 homolog; 23.3 81 0.0028 28.1 4.4 63 71-135 57-119 (200)
No 1
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.95 E-value=2e-27 Score=197.09 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=80.2
Q ss_pred ccceEEEEEEeCCCCeEEECCCC-cEEEEEEEEEcC---CCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCC
Q 020012 68 VANSVNLIGHVDAPVQFQTSSDG-KHWAGTVIVQHA---ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA 143 (332)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~sG-~~vA~fsLAv~~---~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~sye 143 (332)
-||+|+|||||++|||+|+|++| .++|+|+||+++ .++|+||+|++||++||.|++||+|||+|+|+|+|++++|+
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~ 89 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 48999999999999999999998 999999999984 24789999999999999999999999999999999999999
Q ss_pred cC---CeeEEEEEEeEEE
Q 020012 144 IE---GQANVQVMVHSLN 158 (332)
Q Consensus 144 dk---grs~~eVvVe~I~ 158 (332)
++ .++.+||+|++|.
T Consensus 90 ~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEE
Confidence 86 4788999999874
No 2
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.94 E-value=5.7e-27 Score=193.96 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=87.7
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeee
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t 139 (332)
.|||+|+|+|||++|||++++++|..+|.|+||+++. .+++||+|++||++||.+++||+||++|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 5899999999999999999999999999999999762 368999999999999999999999999999999999
Q ss_pred cCCCcC---CeeEEEEEEeEEEEeccCCcc
Q 020012 140 DPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (332)
Q Consensus 140 ~syedk---grs~~eVvVe~I~FL~~k~~~ 166 (332)
++|+++ .++.++|+|++|.||+++...
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~~ 112 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPRE 112 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC-----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999976 467889999999999887543
No 3
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.93 E-value=2.1e-26 Score=195.15 Aligned_cols=102 Identities=12% Similarity=0.199 Sum_probs=88.1
Q ss_pred CccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------------CCCeeEEEEEec-cHHHHHHhhcCCC
Q 020012 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------------SHSLWIPILFEG-DLAHIASSHLKKD 128 (332)
Q Consensus 65 ~p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~---------------~~T~wI~VvaWG-kLAE~~aqyLkKG 128 (332)
+++.||+|+|||||++|||+|++++|.++|.|+||+++. ..++||+|++|| ++||.+++||+||
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 457899999999999999999999999999999999752 147999999999 5999999999999
Q ss_pred CeEEEEEEeeecCCCcC-C--eeEEEEEEeEEEEeccCCcc
Q 020012 129 DHVHIAGQLTADPPAIE-G--QANVQVMVHSLNLIEPTSQK 166 (332)
Q Consensus 129 D~V~VeGrL~t~syedk-g--rs~~eVvVe~I~FL~~k~~~ 166 (332)
++|+|+|+|++++|+++ | ++.++|+|++|.||++++..
T Consensus 90 ~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k~ 130 (132)
T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE 130 (132)
T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC------
T ss_pred CEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 99999999999999876 4 57889999999999987653
No 4
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.93 E-value=3.5e-26 Score=194.77 Aligned_cols=98 Identities=22% Similarity=0.289 Sum_probs=88.9
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEee
Q 020012 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (332)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~---------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~ 138 (332)
|||+|+|+|||++|||+|+|++|.++|.|+||+++. ++++||+|++||++||.+++||+|||+|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 689999999999999999999999999999999851 15799999999999999999999999999999999
Q ss_pred ecCCCcC-C--eeEEEEEEeEEEEeccCCc
Q 020012 139 ADPPAIE-G--QANVQVMVHSLNLIEPTSQ 165 (332)
Q Consensus 139 t~syedk-g--rs~~eVvVe~I~FL~~k~~ 165 (332)
+++|+++ | ++.++|+|++|.||+++..
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 110 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSD 110 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC--
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCcc
Confidence 9999876 4 5678999999999987654
No 5
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.93 E-value=9.5e-26 Score=189.02 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=87.7
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEec-cHHHHHHhhcCCCCeEEEEE
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAG 135 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWG-kLAE~~aqyLkKGD~V~VeG 135 (332)
++||+|+|+|||++|||+|+|++|..+|.|+||+++. ++|+||+|++|| ++||.+++||+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 6899999999999999999999999999999998751 158999999999 89999999999999999999
Q ss_pred EeeecCCCc---C--CeeEEEEEEe----EEEEeccCCc
Q 020012 136 QLTADPPAI---E--GQANVQVMVH----SLNLIEPTSQ 165 (332)
Q Consensus 136 rL~t~syed---k--grs~~eVvVe----~I~FL~~k~~ 165 (332)
+|++++|++ + .++.++|+|+ +|.||++++.
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 999999986 4 4788899998 9999998753
No 6
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=1e-25 Score=196.51 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=82.4
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-C-------C-CCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEee
Q 020012 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-A-------S-HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (332)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~-~-------~-~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~ 138 (332)
+||+|+|||||++|||+|+|++|..+|.|+||+++ . . +|+||+|++||++||.+++||+||++|+|+|+|+
T Consensus 15 ~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 94 (153)
T 1z9f_A 15 FFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEMR 94 (153)
T ss_dssp CCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEEE
Confidence 79999999999999999999999999999999986 3 1 2899999999999999999999999999999999
Q ss_pred ecCCCcC---CeeEEEEEEeEEEEeccCCcc
Q 020012 139 ADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (332)
Q Consensus 139 t~syedk---grs~~eVvVe~I~FL~~k~~~ 166 (332)
+++|+++ .++.++|+|++|.||+++...
T Consensus 95 ~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 95 MRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEC-------CCCEEEEEEEEEEECC-----
T ss_pred eceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 9999876 467899999999999876543
No 7
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.93 E-value=4e-26 Score=186.44 Aligned_cols=94 Identities=14% Similarity=0.284 Sum_probs=79.2
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-CCCCee-------EEEEEeccHHHHHHhhcCCCCeEEEEEEeee
Q 020012 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-ASHSLW-------IPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (332)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~-~~~T~w-------I~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t 139 (332)
|||+|+|+|||++|||+|||++|.++|.|+||++. ..+++| |+|++||++||.+++||+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 68999999999999999999999999999999964 245677 9999999999999999999999999999999
Q ss_pred cCCCcC-CeeEEEEEEeEEEEeccC
Q 020012 140 DPPAIE-GQANVQVMVHSLNLIEPT 163 (332)
Q Consensus 140 ~syedk-grs~~eVvVe~I~FL~~k 163 (332)
+ +++ |+.+++|+|++|.||+++
T Consensus 81 ~--~~~~G~~r~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 81 H--KAKNGLSKMVLHAEQIELIDSG 103 (104)
T ss_dssp ----------CCEEEEEEEEEC---
T ss_pred c--cCCCCCEEEEEEEEEEEECcCC
Confidence 9 444 655599999999999764
No 8
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.93 E-value=2e-25 Score=192.30 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=91.2
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGr 136 (332)
++||+|+|||||++|||+|+|++|.++|.|+||+++. ++++||+|++|+++||.+++||+|||+|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 6899999999999999999999999999999999861 248999999999999999999999999999999
Q ss_pred eeecCCCcC-C--eeEEEE---EEeEEEEeccCCcc
Q 020012 137 LTADPPAIE-G--QANVQV---MVHSLNLIEPTSQK 166 (332)
Q Consensus 137 L~t~syedk-g--rs~~eV---vVe~I~FL~~k~~~ 166 (332)
|++++|+++ + ++.++| +|++|.||+++...
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 999999976 4 567799 99999999876543
No 9
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.92 E-value=2.7e-25 Score=194.46 Aligned_cols=101 Identities=19% Similarity=0.346 Sum_probs=89.1
Q ss_pred CccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEE
Q 020012 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIA 134 (332)
Q Consensus 65 ~p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~Ve 134 (332)
+.+.||+|+|||||++|||+|+|++|..+|.|+||+++. +.|+||+|++||++||.+++||+||++|+|+
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 446699999999999999999999999999999999751 1489999999999999999999999999999
Q ss_pred EEeeecCCCcC-C--eeEEEEEEeEEEEeccCCc
Q 020012 135 GQLTADPPAIE-G--QANVQVMVHSLNLIEPTSQ 165 (332)
Q Consensus 135 GrL~t~syedk-g--rs~~eVvVe~I~FL~~k~~ 165 (332)
|+|++++|+++ | ++.++|+|++|.||+++..
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~ 117 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGG 117 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC----
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCCcc
Confidence 99999999876 4 6788999999999998764
No 10
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.92 E-value=2e-25 Score=191.57 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=85.9
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C----CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeee
Q 020012 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A----SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (332)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~----~----~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t 139 (332)
|+|+|+|||||++|||+|||++|.+||.|+||+++ . +.++||+|++||++||.|.+||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 35999999999999999999999999999999964 1 135799999999999999999999999999999999
Q ss_pred cCCCcCCeeEEEEEEeEEEEeccCCcc
Q 020012 140 DPPAIEGQANVQVMVHSLNLIEPTSQK 166 (332)
Q Consensus 140 ~syedkgrs~~eVvVe~I~FL~~k~~~ 166 (332)
++. .+|+..|.++|++|.||+++...
T Consensus 98 r~~-k~G~kr~~~~a~~i~~l~~k~~~ 123 (134)
T 1v1q_A 98 HKA-KNGLSKMVLHAEQIELIDSVDKL 123 (134)
T ss_dssp ECT-TTTSCEEEEEEEEEEETTSCSCC
T ss_pred EEC-CCCCEEEEEEEEEEEECcCCCCc
Confidence 852 23777788899999999876543
No 11
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.92 E-value=8.1e-25 Score=193.66 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=85.0
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEecc-HHHHHHhhcCCCCeEEEEE
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAG 135 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWGk-LAE~~aqyLkKGD~V~VeG 135 (332)
.|||+|+|||||++|||+|++++|+.+|+|+||+++. ++|+||+|++||+ +||.+++||+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 5799999999999999999999999999999999862 2589999999999 9999999999999999999
Q ss_pred EeeecCCCcC---CeeEEEEEE----eEEEEeccCCcc
Q 020012 136 QLTADPPAIE---GQANVQVMV----HSLNLIEPTSQK 166 (332)
Q Consensus 136 rL~t~syedk---grs~~eVvV----e~I~FL~~k~~~ 166 (332)
+|++++|+++ .++.++|+| ++|.||++++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999876 467889988 689999987654
No 12
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.91 E-value=1.2e-24 Score=180.46 Aligned_cols=91 Identities=20% Similarity=0.339 Sum_probs=80.4
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeee-cCCCcC-
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA-DPPAIE- 145 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t-~syedk- 145 (332)
-|+|+|||||++|||+++|++|..++.|+|||++. ..++||+|++|+++||.|..| ||++|+|+|+|++ +.|+++
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~d 88 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPEE 88 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC----
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECCC
Confidence 39999999999999999999999999999999984 568999999999999998755 9999999999987 788766
Q ss_pred --CeeEEEEEEeEEEEec
Q 020012 146 --GQANVQVMVHSLNLIE 161 (332)
Q Consensus 146 --grs~~eVvVe~I~FL~ 161 (332)
.|+.++|+|++|.||+
T Consensus 89 G~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 89 GKNKLILTVFARDISVVP 106 (107)
T ss_dssp ----EEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEEEEEcc
Confidence 4788899999999996
No 13
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.91 E-value=3e-24 Score=194.12 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=87.6
Q ss_pred ccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEecc-HHHHHHhhcCCCCeEEEE
Q 020012 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIA 134 (332)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWGk-LAE~~aqyLkKGD~V~Ve 134 (332)
.+.||+|+|||||++|||+|+|++|+.||+|+||+++. ++|+||+|++|++ +||+|++||+||++|+|+
T Consensus 23 a~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 23 AGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIE 102 (193)
T ss_dssp CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred hhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEE
Confidence 34589999999999999999999999999999999751 1489999999996 999999999999999999
Q ss_pred EEeeecCCCcC---CeeEEEEEEe----EEEEeccCCcc
Q 020012 135 GQLTADPPAIE---GQANVQVMVH----SLNLIEPTSQK 166 (332)
Q Consensus 135 GrL~t~syedk---grs~~eVvVe----~I~FL~~k~~~ 166 (332)
|+|++++|+++ .++.++|+|+ +|.||+++...
T Consensus 103 GrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 103 GQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAA 141 (193)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-----
T ss_pred EEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCC
Confidence 99999999876 4678899999 68999987654
No 14
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.91 E-value=1.8e-24 Score=183.64 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=84.2
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-----------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-----------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeG 135 (332)
.-+|+|+|||||++|||++++++| ++|.|+||+++. .+|+||+|++||++||.+++||+|||+|+|+|
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEE
Confidence 348999999999999999999999 999999999751 15899999999999999999999999999999
Q ss_pred EeeecCCCcC-C--eeEEEEEEeEEEEecc
Q 020012 136 QLTADPPAIE-G--QANVQVMVHSLNLIEP 162 (332)
Q Consensus 136 rL~t~syedk-g--rs~~eVvVe~I~FL~~ 162 (332)
+|++++| ++ | ++.++|+|++|..--.
T Consensus 92 rL~~~~~-dkdG~~r~~~ev~a~~vg~dL~ 120 (128)
T 4dam_A 92 RLKVRTD-VREGQSRTSADIDAVAIGHDLA 120 (128)
T ss_dssp EEEEEEE-EETTEEEEEEEEEEEEEEECTT
T ss_pred EEEEeEE-cCCCCEEEEEEEEEEEEEeccC
Confidence 9999999 65 4 6788999999875433
No 15
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.91 E-value=3e-24 Score=189.50 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=86.5
Q ss_pred ccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-----------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 020012 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (332)
Q Consensus 68 l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-----------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGr 136 (332)
.+|+|+|||||++|||+|+|++|+.||+|+||+++. .+++||+|++|+++||.|++||+||++|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 489999999999999999999999999999999641 158999999999999999999999999999999
Q ss_pred eeecCCCcC---CeeEEEEEEe----EEEEeccCCc
Q 020012 137 LTADPPAIE---GQANVQVMVH----SLNLIEPTSQ 165 (332)
Q Consensus 137 L~t~syedk---grs~~eVvVe----~I~FL~~k~~ 165 (332)
|++++|+++ .++.++|+|+ +|.|++.+..
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~~ 118 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVN 118 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEeccccc
Confidence 999999976 4778899777 6788875543
No 16
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.90 E-value=8.2e-25 Score=194.94 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=88.3
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGr 136 (332)
++||+|+|||||++|||+|+|++|..+|.|+||+++. ++|+||+|++||++||.|++||+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 4799999999999999999999999999999998751 137999999999999999999999999999999
Q ss_pred eeecCCCcC-C--eeEEEE---EEeEEEEeccCCc
Q 020012 137 LTADPPAIE-G--QANVQV---MVHSLNLIEPTSQ 165 (332)
Q Consensus 137 L~t~syedk-g--rs~~eV---vVe~I~FL~~k~~ 165 (332)
|++++|+++ | ++.++| +|++|.||+++..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 999999876 4 567899 8999999987654
No 17
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.90 E-value=8.1e-24 Score=177.33 Aligned_cols=93 Identities=16% Similarity=0.201 Sum_probs=82.2
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CC-CeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeec
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SH-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-------~~-T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~ 140 (332)
||+|+|+|||++|||+|||++|.++|.|+||+++. .+ .+||+|++||++||.+ +||+||++|+|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 79999999999999999999999999999998741 12 3569999999999998 999999999999999999
Q ss_pred CCCcCCeeEEEEEEeEEEEeccCCc
Q 020012 141 PPAIEGQANVQVMVHSLNLIEPTSQ 165 (332)
Q Consensus 141 syedkgrs~~eVvVe~I~FL~~k~~ 165 (332)
+- ++ +.++|.|++|+||++...
T Consensus 80 s~--~G-~kl~l~a~~Ie~l~~~~~ 101 (115)
T 3fhw_A 80 RK--DS-VKVKLHLQQARRIAGSMG 101 (115)
T ss_dssp ST--TC-SSEEEEEEEEEECCCSCC
T ss_pred CC--CC-CEEEEEEEEEEEcCCCCC
Confidence 62 35 678999999999986643
No 18
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.90 E-value=1.2e-23 Score=183.06 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=83.5
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccH-HHHHHhhcCCCCeEEEEE
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDL-AHIASSHLKKDDHVHIAG 135 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~----------~~T~wI~VvaWGkL-AE~~aqyLkKGD~V~VeG 135 (332)
..||+|+|||||++||| |++ +|..+|.|+||+++. ++|+||+|++||++ ||+|++||+||++|+|+|
T Consensus 4 ~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 4 KSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp -CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEE
Confidence 35899999999999999 999 999999999999852 46899999999997 999999999999999999
Q ss_pred EeeecCCCcC-C--eeEEEEEEe-----EEEEeccCCc
Q 020012 136 QLTADPPAIE-G--QANVQVMVH-----SLNLIEPTSQ 165 (332)
Q Consensus 136 rL~t~syedk-g--rs~~eVvVe-----~I~FL~~k~~ 165 (332)
+|++++|+++ | ++.++|++- .+.+|+++..
T Consensus 82 rL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~ 119 (148)
T 3k7u_C 82 RLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 119 (148)
T ss_dssp EEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC-
T ss_pred EEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCC
Confidence 9999999887 4 567788864 5899987654
No 19
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.90 E-value=1.6e-23 Score=185.22 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=82.9
Q ss_pred ccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-------C---CCCeeEEEEEeccH-HHHHHhhcCCCCeEEEE
Q 020012 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-------A---SHSLWIPILFEGDL-AHIASSHLKKDDHVHIA 134 (332)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~-------~---~~T~wI~VvaWGkL-AE~~aqyLkKGD~V~Ve 134 (332)
...||+|+||||||+|||+|+++ ..||.|+||+++ + .+|+||+|++||++ ||+|++||+||++|+|+
T Consensus 19 a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEEC
T ss_pred hcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEEEEE
Confidence 56799999999999999999999 899999999983 1 35899999999999 99999999999999999
Q ss_pred EEeeecCCCcC-C--eeEE-EEEEe----EEEEeccCCc
Q 020012 135 GQLTADPPAIE-G--QANV-QVMVH----SLNLIEPTSQ 165 (332)
Q Consensus 135 GrL~t~syedk-g--rs~~-eVvVe----~I~FL~~k~~ 165 (332)
|+|++++|+|+ + ++.+ .|+|. .+.+|+++..
T Consensus 97 GrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~ 135 (164)
T 3k81_C 97 GRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 135 (164)
T ss_dssp CEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC---
T ss_pred EEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCC
Confidence 99999999887 3 3333 55665 7999987654
No 20
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.89 E-value=1.3e-23 Score=172.61 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=77.3
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CCC-eeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecC
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHS-LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADP 141 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-------~~T-~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~s 141 (332)
|+|+|||||++|||+|||++|.+||.|+||+++. .++ +||+|++||++|| +.+ |+||++|+|+|+|++++
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~rs 85 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQKS 85 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEESS
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEECc
Confidence 9999999999999999999999999999999651 133 5599999999999 655 99999999999999999
Q ss_pred CCcCCeeEEEEEEeEEEEec
Q 020012 142 PAIEGQANVQVMVHSLNLIE 161 (332)
Q Consensus 142 yedkgrs~~eVvVe~I~FL~ 161 (332)
| +++ ...+.+++|++++
T Consensus 86 ~--~~~-~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 86 R--RSL-MPMLRIQNIKEYK 102 (103)
T ss_dssp S--SCC-CEEEEEEEEEECC
T ss_pred c--CCc-cEEEEEEEEEEcC
Confidence 9 334 7889999999985
No 21
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.89 E-value=8.1e-23 Score=185.55 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=81.9
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-----C------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~-----~------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL 137 (332)
+|+|+|||||++|||+|+|++|+.||+|+||+++ . .+|+||+|++|+++||.|++||+||++|+|+|+|
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGrL 83 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRL 83 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEE
Confidence 7999999999999999999999999999999963 1 2689999999999999999999999999999999
Q ss_pred eecCCCcC---CeeEEEEEEeEEEEecc
Q 020012 138 TADPPAIE---GQANVQVMVHSLNLIEP 162 (332)
Q Consensus 138 ~t~syedk---grs~~eVvVe~I~FL~~ 162 (332)
++++|+++ .++.++|+|++|..--.
T Consensus 84 ~~rswedkdG~kr~~~eVvA~~Ig~dL~ 111 (199)
T 3eiv_A 84 KQRSYEDREGVKRTVYELDVDEVGASLR 111 (199)
T ss_dssp EEEC--------CCEEEEEEEEEEEECS
T ss_pred EeeEEECCCCCEEEEEEEEEEEEecccc
Confidence 99999976 57899999999976433
No 22
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.89 E-value=4.3e-23 Score=192.19 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=87.7
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeec
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~ 140 (332)
++||+|+|+|||++|||+|++++|+.+|.|+||+++. ++++||+|++||++||.++ ||+||++|+|+|+|+++
T Consensus 126 ~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 126 RALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVND 204 (264)
T ss_dssp CCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEE
T ss_pred cceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEee
Confidence 4789999999999999999999999999999999873 3589999999999999999 99999999999999999
Q ss_pred CCCcC-C--eeEEEEEEeEEEEeccCCcc
Q 020012 141 PPAIE-G--QANVQVMVHSLNLIEPTSQK 166 (332)
Q Consensus 141 syedk-g--rs~~eVvVe~I~FL~~k~~~ 166 (332)
+|+++ | ++.++|+|++|.||+++...
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 99876 4 56789999999999876543
No 23
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.88 E-value=1.8e-22 Score=192.56 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=88.9
Q ss_pred ccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhh-cCCCCeEEEEE
Q 020012 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSH-LKKDDHVHIAG 135 (332)
Q Consensus 66 p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~---------~~T~wI~VvaWGkLAE~~aqy-LkKGD~V~VeG 135 (332)
.++||+|+|||||++|||+|+|++|..+|.|+||+++. +.++||+|++||++||.+++| |+||++|+|+|
T Consensus 2 a~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 2 ARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp -CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred CCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 35799999999999999999999999999999999751 136999999999999999999 99999999999
Q ss_pred EeeecCCCcC---CeeEEEEEEeEEEEeccCCc
Q 020012 136 QLTADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (332)
Q Consensus 136 rL~t~syedk---grs~~eVvVe~I~FL~~k~~ 165 (332)
+|++++|+++ .++.++|+|++|.||+.+..
T Consensus 82 ~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 82 TLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 9999999876 46778999999999987653
No 24
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.88 E-value=9.2e-23 Score=189.97 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=84.1
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~---------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL 137 (332)
++||+|+|+|||++|||+|++++|..+|.|+||+++. +.++||+|++||++||.+++||+||++|+|+|+|
T Consensus 3 ~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L 82 (264)
T 2fxq_A 3 RGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE
T ss_pred CceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEE
Confidence 4699999999999999999999999999999999762 1379999999999999999999999999999999
Q ss_pred eecCCCcC--CeeEEEEEEeEEEEeccCC
Q 020012 138 TADPPAIE--GQANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 138 ~t~syedk--grs~~eVvVe~I~FL~~k~ 164 (332)
++++|+++ .++.++|+|++|.||+++.
T Consensus 83 ~~~~~~~dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 83 EYRQWEKDGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEC---------CCEEEEEEEEEECCCC-
T ss_pred EeeeEEeCCEEEEEEEEEEEEEEECcCCc
Confidence 99999866 4677899999999998776
No 25
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.86 E-value=9.7e-22 Score=187.48 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=86.4
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~---------~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL 137 (332)
+|||+|+|+|||++|||+|+|++|..+|.|+||+++. ++++||+|++||++||.+++ |+||++|+|+|+|
T Consensus 127 ~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 127 GAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp TCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEE
Confidence 5799999999999999999999999999999999751 24789999999999999999 9999999999999
Q ss_pred eecCCCcC---CeeEEEEEEeEEEEeccCCc
Q 020012 138 TADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (332)
Q Consensus 138 ~t~syedk---grs~~eVvVe~I~FL~~k~~ 165 (332)
++++|+++ .++.++|+|++|.||+.+..
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~ 236 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALARGAG 236 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC---
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEeccCCC
Confidence 99999876 46788999999999987654
No 26
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.84 E-value=2.1e-21 Score=159.45 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=66.0
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C---CCC-eeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeec
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A---SHS-LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~----~---~~T-~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~ 140 (332)
||+|+|+|||++|||+|||++|.++|.|+||+++ . .++ +||+|++||++||.+++ ++||++|.|+|+|+++
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeC
Confidence 8999999999999999999999999999999975 1 134 55999999999999997 6899999999999999
Q ss_pred CCCcC
Q 020012 141 PPAIE 145 (332)
Q Consensus 141 syedk 145 (332)
+|..+
T Consensus 81 s~~s~ 85 (101)
T 3en2_A 81 HRSSK 85 (101)
T ss_dssp C----
T ss_pred cCCCC
Confidence 99654
No 27
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.82 E-value=2.5e-20 Score=174.95 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=78.2
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------C---CCeeEEEEEeccH--HHHHHhhcCCCCeEEEEEE
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------S---HSLWIPILFEGDL--AHIASSHLKKDDHVHIAGQ 136 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~-------~---~T~wI~VvaWGkL--AE~~aqyLkKGD~V~VeGr 136 (332)
+|+|+||||| +|||+|+|+ |+.+|+|+||+++. + +|+||+|++||++ || +++||+||++|+|+|+
T Consensus 146 lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGr 222 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGR 222 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEE
Confidence 8999999999 999999999 99999999999751 1 5899999999999 99 8889999999999999
Q ss_pred eeecCCCcC---CeeEEE-EEEe----EEEEec
Q 020012 137 LTADPPAIE---GQANVQ-VMVH----SLNLIE 161 (332)
Q Consensus 137 L~t~syedk---grs~~e-VvVe----~I~FL~ 161 (332)
|++++|+|+ .++.++ |.|+ .+.+|+
T Consensus 223 L~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 223 LRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEECSSSSCEEEEEEEEECTTTCEEEECC
T ss_pred EEeeeEEcCCCCEEEEEEEEEEECCCCEEEEec
Confidence 999999887 345555 4554 566554
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.77 E-value=8.7e-19 Score=164.45 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=78.9
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEec-cHHHHHHhhcCCCCeEEEEEEeee
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLTA 139 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~------~~T~wI~VvaWG-kLAE~~aqyLkKGD~V~VeGrL~t 139 (332)
+++|+|+|||||++| |+|||++|. ++.|+||++.. .+++||.|++|| ++||.|.+||+||++|+|+|||++
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 789999999999999 999999984 66677776542 245889999999 999999999999999999999999
Q ss_pred cCCCcC---CeeEEEEEEeEEEEecc
Q 020012 140 DPPAIE---GQANVQVMVHSLNLIEP 162 (332)
Q Consensus 140 ~syedk---grs~~eVvVe~I~FL~~ 162 (332)
|+++ +++.++|+|+++.-+..
T Consensus 106 --~~~~dG~kr~~~evva~~v~~~~G 129 (257)
T 4dni_A 106 --VPQYDGSMRKYYHYPVIQVHPGCG 129 (257)
T ss_dssp --EEEECSSSSSEEEEEEEEECTTTC
T ss_pred --eECCCCCcEEEEEEEEEEEEecCC
Confidence 6543 68899999999877543
No 29
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.71 E-value=2.5e-17 Score=143.44 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=72.4
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEec-cHHHHHHhhcCCCCeEEEEEEeee
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLTA 139 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~------~~T~wI~VvaWG-kLAE~~aqyLkKGD~V~VeGrL~t 139 (332)
+.+|+|+|+|||+ ||+.+++. +..|+.|+||+++. .+++||+|.+|| ++||.+.+||+||++|+|+|||++
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrm 119 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 119 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEc
Confidence 6799999999996 99999995 88999999999762 356999999996 999999999999999999999999
Q ss_pred cCCCcC-CeeE
Q 020012 140 DPPAIE-GQAN 149 (332)
Q Consensus 140 ~syedk-grs~ 149 (332)
++|+|+ ++..
T Consensus 120 n~~~d~~gkk~ 130 (148)
T 3stb_C 120 VPQYDGSMRKY 130 (148)
T ss_dssp EEEEETTTTEE
T ss_pred ceeECCCCCEE
Confidence 999877 5443
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.39 E-value=0.0013 Score=54.24 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=53.0
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC--CCCeeEEEEEeccHH--HHHHhhcCCCCeEEEEEEeeecC-CCc
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA--SHSLWIPILFEGDLA--HIASSHLKKDDHVHIAGQLTADP-PAI 144 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~--~~T~wI~VvaWGkLA--E~~aqyLkKGD~V~VeGrL~t~s-yed 144 (332)
.++.|+|+|- |++--+.. ...|..|+|+++-. -+-++|.|-++|+.+ +.+.+.|+-|..|.|.|||++.. |+.
T Consensus 4 sn~vlvG~V~-DVQ~Gfl~-~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIA-DVQHGFLG-AMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEE-EEEEEEET-TEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEE-Eeeecccc-cceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 4688999996 66665543 45688999999753 456999999999998 88999999999999999999965 554
Q ss_pred C
Q 020012 145 E 145 (332)
Q Consensus 145 k 145 (332)
-
T Consensus 82 ~ 82 (105)
T 4dka_C 82 V 82 (105)
T ss_dssp T
T ss_pred c
Confidence 4
No 31
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.56 E-value=0.0099 Score=47.80 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=54.7
Q ss_pred ceEEEEEEeCCCCeEE--ECCCC--cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 020012 70 NSVNLIGHVDAPVQFQ--TSSDG--KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (332)
Q Consensus 70 NsV~LIGrLg~DPElr--~T~sG--~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~syedk 145 (332)
..|.++|.|..--+++ .+.+| ..++.++|+ ++|--|++++|++.|+.. ..|+.|+.|+|.|......|.+.
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~----D~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f~g~ 91 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIA----DDTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGFGGR 91 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE----ETTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCSSSS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEE----eCCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEccccCCe
Confidence 4579999998654666 45677 677777777 445689999999998754 67999999999998855556543
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.45 E-value=0.015 Score=46.19 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=55.8
Q ss_pred ceEEEEEEeCCCCeEEE--CCCC--cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 020012 70 NSVNLIGHVDAPVQFQT--SSDG--KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~--T~sG--~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~syedk 145 (332)
..|.++|+|..--+++. ..+| ..+..+.|+ ++|--|++++|++.|+. .++.||.|.|.|+.+...
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~----DeTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~~---- 80 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK----DDTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQGY---- 80 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE----ETTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC-----
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----CCCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEcC----
Confidence 68999999987665654 3467 356666666 56789999999999986 799999999999875431
Q ss_pred CeeEEEEEEeEEEEec
Q 020012 146 GQANVQVMVHSLNLIE 161 (332)
Q Consensus 146 grs~~eVvVe~I~FL~ 161 (332)
..+++.+.+-.-|+
T Consensus 81 --~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 81 --SGLEISVDNIGIIE 94 (97)
T ss_dssp ---CEEEEEEEEEEEE
T ss_pred --CeEEEEECCCcEEE
Confidence 25577776655543
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.027 Score=45.58 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=58.9
Q ss_pred ceEEEEEEeCCCCeEEE--CCCCcE--EEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 020012 70 NSVNLIGHVDAPVQFQT--SSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~--T~sG~~--vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~syedk 145 (332)
+.|.++|+|..--+++. ..+|.. +..+.|+ ++|--|+|++|++.|+. .+..||.|.|.|+.+....
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~----D~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~~--- 84 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVR----DETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGYY--- 84 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE----ETTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECTT---
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----CCCCcEEEEEECccccc---ccCCCCEEEEEEEEEEccC---
Confidence 68999999997776654 356754 5555555 34557999999999987 7999999999998877532
Q ss_pred CeeEEEEEEeEEEEecc
Q 020012 146 GQANVQVMVHSLNLIEP 162 (332)
Q Consensus 146 grs~~eVvVe~I~FL~~ 162 (332)
-.+++.+.+..-|+.
T Consensus 85 --g~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 85 --GGLECTANYVEILKK 99 (105)
T ss_dssp --SSEEEEEEEEEEEEC
T ss_pred --CCEEEEeCCceEEEe
Confidence 134666666555543
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=95.12 E-value=0.056 Score=44.08 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=47.9
Q ss_pred cceEEEEEEeCCCCeEE--ECCCCc-EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEE-EEeee
Q 020012 69 ANSVNLIGHVDAPVQFQ--TSSDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr--~T~sG~-~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~Ve-GrL~t 139 (332)
.+.|.++|.|..--+++ .+.+|+ .+....|+ ++|--|++++|++.|+ .++.|+.|+|. |++..
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~----D~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG----DETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTA 78 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE----ETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE----eCCCEEEEEEECChhh----cCCCCCEEEEEeEEEEE
Confidence 45688999987654434 567886 77777776 4455699999999874 58999999999 88765
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.054 Score=43.99 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=50.1
Q ss_pred cceEEEEEEeCCCCeEEECC--CC-cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 020012 69 ANSVNLIGHVDAPVQFQTSS--DG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~--sG-~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGr 136 (332)
++.+.+.|||.+--++|... +| ..+..+.|+ +++--|++++|+++|+.....|+.|+.++|+|-
T Consensus 14 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~----De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 14 QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL----DTSGEIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE----ETTEEEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred CCceEEEEEEEEeccceEEecCCCCceEEEEEEE----CCCCeEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 56789999999888876543 33 345556555 223499999999999999999999999999983
No 36
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=94.30 E-value=0.13 Score=41.36 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=48.6
Q ss_pred cceEEEEEEeCCCCeEEECCCCcE--EEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEE-EEeee
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~--vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~Ve-GrL~t 139 (332)
++.|.++|+|-.--+.+.+.+|.. ++...|+ ++|--|++++|++. |+.||.|.|. |+...
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~----DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE----DDTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE----CSSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEE----cCCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 567999999987666666678874 7777777 56778999999987 9999999999 77764
No 37
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=91.81 E-value=2.8 Score=33.92 Aligned_cols=85 Identities=21% Similarity=0.136 Sum_probs=58.3
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC--CCC--CeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCC
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--ASH--SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~--~~~--T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~sy 142 (332)
-|+|.|-|-|-|..- .-+ ..+.-...+|...+ ++. |+|+-+-+-|.||-.+.+|.+|=..|.|+|-|++..
T Consensus 6 gMLN~V~LEG~IeS~---kWS-~kKTGF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~- 80 (110)
T 2hql_A 6 GMLNRVFLEGEIESS---CWS-VKKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTYL- 80 (110)
T ss_dssp -CCEEEEEEEEEEEE---EEC-TTCSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEEE-
T ss_pred ceEEEEEEeeeeehh---ccc-ccCceEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHH-
Confidence 489999999987542 122 22222234455555 333 689999999999999999999999999999998743
Q ss_pred CcC--CeeEEEEEEeEE
Q 020012 143 AIE--GQANVQVMVHSL 157 (332)
Q Consensus 143 edk--grs~~eVvVe~I 157 (332)
++ +.-...|.|..|
T Consensus 81 -ekkS~iWKTtI~~~KI 96 (110)
T 2hql_A 81 -ERKSEIWKTTIEIVKI 96 (110)
T ss_dssp -ETTTTEEEEEEEEEEE
T ss_pred -HHhcccceeEEEEEEE
Confidence 44 444445555444
No 38
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=91.35 E-value=1.7 Score=47.74 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=66.6
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH--HHhhcCCCCeEEEEEEeeecCCCc
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAI 144 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~--~aqyLkKGD~V~VeGrL~t~syed 144 (332)
.-.+.|++.|.|-. .|.|.+.+|+.+..|.|. +.|+-|.|..|-+-.+. +.+.+++|+.|.|.|.++.+.|..
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t----d~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT----DYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVR 89 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE----CSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTT
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEE----eCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCCc
Confidence 34678999999884 899999999988777775 45777999888664443 456799999999999999999865
Q ss_pred CCeeEEEEEEeEEEEecc
Q 020012 145 EGQANVQVMVHSLNLIEP 162 (332)
Q Consensus 145 kgrs~~eVvVe~I~FL~~ 162 (332)
+ +.+.+.+|.-+..
T Consensus 90 ~----~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 90 D----LVIIANDLNEIAA 103 (1041)
T ss_dssp E----EEEEEEEEEEECC
T ss_pred c----eEEEeeeeEEecc
Confidence 3 2355556655553
No 39
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.87 E-value=1.8 Score=35.74 Aligned_cols=89 Identities=9% Similarity=0.007 Sum_probs=58.2
Q ss_pred CccccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH---HHhhcCCCCeEEEEEE
Q 020012 60 SEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI---ASSHLKKDDHVHIAGQ 136 (332)
Q Consensus 60 ~tI~w~p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~---~aqyLkKGD~V~VeGr 136 (332)
..+...-.-++.|.|+|.|..= + .+.....++|. +.|--|.|..|.+..+. -...+..|+.|.|.|+
T Consensus 27 ~~f~i~g~~i~~V~iVG~V~~~-~-----~~~~~~~~~ld----D~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~ 96 (136)
T 4gop_B 27 AEFILDGAELGQLTFVAVVRNI-S-----RNATNVAYSVE----DGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGT 96 (136)
T ss_dssp CCCBSSSSBCCEEEEEEEEEEE-E-----ECSSEEEEEEE----CSSCEEEEEEECC--------CCSCCTTCEEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEEE-E-----ecCCeEEEEEE----CCCCCEEEEEecccCCcccccccccCCCCEEEEEEE
Confidence 3445555669999999998742 2 23334455554 44557999999876653 3567999999999999
Q ss_pred eeecCCCcCCeeEEEEEEeEEEEeccCC
Q 020012 137 LTADPPAIEGQANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 137 L~t~syedkgrs~~eVvVe~I~FL~~k~ 164 (332)
|+.. .+ ..+|.+..|..++..+
T Consensus 97 v~~f--~g----~~qi~~~~ir~v~d~N 118 (136)
T 4gop_B 97 LKSF--QN----RRSISSGHMRPVIDYN 118 (136)
T ss_dssp EEEE--TT----EEEEEESEEEECSSHH
T ss_pred EEEe--CC----EEEEEEEEEEECCCcc
Confidence 9863 22 2357777777776544
No 40
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=89.48 E-value=2.1 Score=35.16 Aligned_cols=89 Identities=10% Similarity=0.061 Sum_probs=56.5
Q ss_pred ccccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCe-eEEEEEeccHHHH--HHhhcCCCCeEEEEEEe
Q 020012 61 EIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQL 137 (332)
Q Consensus 61 tI~w~p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~-wI~VvaWGkLAE~--~aqyLkKGD~V~VeGrL 137 (332)
.+...-.-++.|.|+|.|..= + .......+.|. +.|- -|.|..|.+..+. ....+..|+.|.|.|+|
T Consensus 23 ~f~i~g~~i~~V~iVG~V~~~-~-----~~~~~~~~~ld----D~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l 92 (132)
T 3kdf_D 23 VFRIGNVEISQVTIVGIIRHA-E-----KAPTNIVYKID----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL 92 (132)
T ss_dssp CEEETTEECCEEEEEEEEEEE-E-----ECSSEEEEEEE----CSSSSCEEEEEEC---------CCCCTTCEEEEEEEE
T ss_pred cEEECCEEEEEEEEEEEEEEE-E-----EcCCeEEEEEE----CCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEE
Confidence 344444558899999998742 2 12233445554 4566 8999999876533 35678999999999999
Q ss_pred eecCCCcCCeeEEEEEEeEEEEeccCCc
Q 020012 138 TADPPAIEGQANVQVMVHSLNLIEPTSQ 165 (332)
Q Consensus 138 ~t~syedkgrs~~eVvVe~I~FL~~k~~ 165 (332)
+.. .+ ..+|.+..|.-++..+.
T Consensus 93 ~~f--~g----~~qi~~~~ir~v~d~Ne 114 (132)
T 3kdf_D 93 RSF--QN----KKSLVAFKIMPLEDMNE 114 (132)
T ss_dssp EEE--TT----EEEEEEEEEEECSSTHH
T ss_pred EeE--CC----EEEEEEEEEEEcCCccH
Confidence 873 22 23577777777776543
No 41
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=86.57 E-value=1 Score=40.12 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=47.8
Q ss_pred cceEEEEEEeCCCCeEEEC--CCC-cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 020012 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T--~sG-~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeG 135 (332)
++.+.|.|||.+--++|.. ++| ..+..+.|+ + ++--|++++|+++|+.....|+.|+.++|++
T Consensus 18 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~-D---e~G~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV-D---ESGEIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE-C---SSCEEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCceEEEEEEEEecccceeeCCCCCceEEEEEEE-C---CCCeEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 5678999999987776643 233 234455554 2 2238999999999999999999999999999
No 42
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=86.52 E-value=5.2 Score=40.16 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=57.9
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc----HH---HHHHhhcCCCCeEEEEEEeeecCC
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD----LA---HIASSHLKKDDHVHIAGQLTADPP 142 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGk----LA---E~~aqyLkKGD~V~VeGrL~t~sy 142 (332)
..|.|.|+|.+ +|. .|+.++.+.|- + .+..|+|++-.+ +. ...++.|..||.|.|+|.+..+.-
T Consensus 37 ~~V~v~GwV~~---~R~--~g~~l~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~ 107 (487)
T 1eov_A 37 KEVLFRARVHN---TRQ--QGATLAFLTLR-Q---QASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDE 107 (487)
T ss_dssp CEEEEEEEEEE---EEE--CSSSEEEEEEE-E---TTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSS
T ss_pred CEEEEEEEEEE---eec--cCCccEEEEEE-E---CCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 35999999974 343 35544444444 2 345788888543 22 234567999999999999987652
Q ss_pred CcC--CeeEEEEEEeEEEEeccCC
Q 020012 143 AIE--GQANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 143 edk--grs~~eVvVe~I~FL~~k~ 164 (332)
... ..-.++|.|+++..|....
T Consensus 108 ~~~~~~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 108 PIKSATVQNLEIHITKIYTISETP 131 (487)
T ss_dssp CCTTSSEEEEEEEEEEEEEEECCC
T ss_pred CCcCCCCCcEEEEEEEEEEeeccc
Confidence 222 2346999999999998653
No 43
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=84.99 E-value=1.3 Score=49.59 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=40.7
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcCCeeEE
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANV 150 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~syedkgrs~~ 150 (332)
.|.+.|-|. ..+.+.|.+|+.++.++|. +.|--+.|++|.+.-+.....|..|..|.|.|+++.+. .+
T Consensus 1044 ~v~v~G~v~-~~~~~~Tk~G~~maf~tle----D~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-------~~ 1111 (1220)
T 2hpi_A 1044 KVLLSGMVE-EVVRKPTRSGGMMARFTLS----DETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-------EL 1111 (1220)
T ss_dssp EEEEEEEEC-CC------------CEEEE----ETTEEEEEC-------------CTTCEEEEEEEEC------------
T ss_pred eEEEEEEEE-EEEEeecCCCCeEEEEEEE----ECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-------Cc
Confidence 477888887 4677788899999999988 44666999999999999999999999999999997431 36
Q ss_pred EEEEeEEEEec
Q 020012 151 QVMVHSLNLIE 161 (332)
Q Consensus 151 eVvVe~I~FL~ 161 (332)
+|+|++|.-++
T Consensus 1112 ~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1112 RVLAQAVWTLE 1122 (1220)
T ss_dssp CEEEEEEEEHH
T ss_pred EEEEeeeecHH
Confidence 79999987664
No 44
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.42 E-value=1.5 Score=42.86 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=48.6
Q ss_pred cceEEEEEEeCCCCeEEEC--CCCc-EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEE
Q 020012 69 ANSVNLIGHVDAPVQFQTS--SDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T--~sG~-~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGr 136 (332)
++.+.|.|||..--++|.. ++|. .+..+.|+ + ++--|++++|+++|+.....|+.|+.++|++-
T Consensus 13 ~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~-D---e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 13 QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL-D---DSGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE-C---SSCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred CcceEEEEEEEEccCcceecCCCCCceEEEEEEE-c---CCCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 4678999999976666543 3332 44555555 2 23389999999999999999999999999984
No 45
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=82.63 E-value=4.7 Score=34.48 Aligned_cols=61 Identities=11% Similarity=0.008 Sum_probs=45.0
Q ss_pred cceEEEEEEeCCCCeEE---EC--CCC--------cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 020012 69 ANSVNLIGHVDAPVQFQ---TS--SDG--------KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr---~T--~sG--------~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeG 135 (332)
++.|+|+|+|-.--+.+ .. .+| ..++...|| ++|--|++++|++.|+ .|+.||.|.|.+
T Consensus 26 ~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg----DeTG~I~ftlW~e~~~----~l~~Gd~v~i~n 97 (145)
T 1wjj_A 26 TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG----DETGCILFTARNDQVD----LMKPGATVILRN 97 (145)
T ss_dssp CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE----CSSCEEEEEECTTHHH----HTCTTCEEEEEE
T ss_pred CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE----cCCcEEEEEEecCCcC----cCCCCCEEEEec
Confidence 67799999987544443 22 134 357787777 7788999999999876 378999999987
Q ss_pred Ee
Q 020012 136 QL 137 (332)
Q Consensus 136 rL 137 (332)
-.
T Consensus 98 a~ 99 (145)
T 1wjj_A 98 SR 99 (145)
T ss_dssp EE
T ss_pred cE
Confidence 43
No 46
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=81.63 E-value=5.4 Score=36.70 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=39.1
Q ss_pred CCCe-eEEEEEeccHHHH--HHhhcCCCCeEEEEEEeeecCCCcCCeeEEEEEEeEEEEeccCCc
Q 020012 104 SHSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTSQ 165 (332)
Q Consensus 104 ~~T~-wI~VvaWGkLAE~--~aqyLkKGD~V~VeGrL~t~syedkgrs~~eVvVe~I~FL~~k~~ 165 (332)
+.|- -|.|.+|.+..+. -...++.|+.|.|.|+|+... -..+|.+..|.-+...+.
T Consensus 96 D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~------g~~qi~i~~ir~v~d~nE 154 (270)
T 2pi2_A 96 DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ------NKKSLVAFKIMPLEDMNE 154 (270)
T ss_dssp CSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEET------TEEEEEEEEEEECSCTHH
T ss_pred CCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC------CeeEEEEEEEEecCCHhH
Confidence 4465 7999999876442 345689999999999998642 234688888888876654
No 47
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=80.92 E-value=5.9 Score=39.46 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=55.6
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec-cHHH-HHHhhcCCCCeEEEEEEeeecCCCcC-C
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG-DLAH-IASSHLKKDDHVHIAGQLTADPPAIE-G 146 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWG-kLAE-~~aqyLkKGD~V~VeGrL~t~syedk-g 146 (332)
..|.|.|+|.. +| ..|+.++.+.|- +.+..|+|++-. ++.+ ..+..|..||.|.|+|.+.... .++ .
T Consensus 31 ~~V~v~Gwv~~---~R--~~Gk~~~Fi~Lr----D~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-~~~~~ 100 (456)
T 3m4p_A 31 KLVTFKGWAYH---IR--KARKTLIFVELR----DGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYA-GKNHP 100 (456)
T ss_dssp SEEEEEEEEEE---EE--CCSSSEEEEEEE----CSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCC-SSSCC
T ss_pred CEEEEEEEEEE---Ee--cCCCceEEEEEE----eCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecC-CcccC
Confidence 46899999974 33 244444444443 223468998876 3322 1245799999999999997653 222 1
Q ss_pred e-----eEEEEEEeEEEEeccCC
Q 020012 147 Q-----ANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 147 r-----s~~eVvVe~I~FL~~k~ 164 (332)
. -.++|.|+++..|....
T Consensus 101 ~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 101 PEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp CSCTTBCSSEEEEEEEEEEECCC
T ss_pred cccCCCCcEEEEEeEEEEEecCC
Confidence 1 35799999999997653
No 48
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=80.44 E-value=6.2 Score=38.94 Aligned_cols=82 Identities=13% Similarity=0.239 Sum_probs=53.2
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH-HHhhcCCCCeEEEEEEeeecCCCcC-Cee
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI-ASSHLKKDDHVHIAGQLTADPPAIE-GQA 148 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~-~aqyLkKGD~V~VeGrL~t~syedk-grs 148 (332)
.|.|.|+|.+ +|. .|+.++.+.|- +.+..++|++-.++.+. ....|..||.|.|+|.+..+. .++ ..-
T Consensus 13 ~V~v~Gwv~~---~R~--~Gk~~~Fi~Lr----D~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~g 82 (435)
T 2xgt_A 13 RVCIKGWIHR---MRR--QGKSLMFFILR----DGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP-EGKEAPN 82 (435)
T ss_dssp EEEEEEEEEE---EEE--CTTSEEEEEEE----CSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC-------T
T ss_pred EEEEEEEEEE---ecc--cCCCcEEEEEE----ECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC-CCcCCCC
Confidence 5999999974 443 34334444443 23456999886554321 112699999999999998743 111 122
Q ss_pred EEEEEEeEEEEecc
Q 020012 149 NVQVMVHSLNLIEP 162 (332)
Q Consensus 149 ~~eVvVe~I~FL~~ 162 (332)
.++|.|+++..|..
T Consensus 83 ~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 83 GHELIADFWKIIGN 96 (435)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred cEEEEEEEEEEeec
Confidence 48999999999985
No 49
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=77.44 E-value=21 Score=30.74 Aligned_cols=88 Identities=11% Similarity=0.190 Sum_probs=58.3
Q ss_pred cCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH---HHHHHhhcCCCCeEEEEEEeeec
Q 020012 64 FQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL---AHIASSHLKKDDHVHIAGQLTAD 140 (332)
Q Consensus 64 w~p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkL---AE~~aqyLkKGD~V~VeGrL~t~ 140 (332)
|.-.-++.|.|+|.|.. .+-+ .+ +....++++. ..-|.|++|-+. +......+.-|+.|.|.|+|++.
T Consensus 42 ~~n~PI~~V~IvGiVv~-~~~~----~~---~~~ytIDD~T-G~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAA-IDIY----EG---KHVLTVDDCS-GMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp ETTEEECEEEEEEEEEE-EEEE----TT---EEEEEEECSS-SCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS
T ss_pred ECCeEEEEEEEEEEEEE-EEEe----CC---EEEEEEecCC-CCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee
Confidence 44445889999999986 2211 12 2334455421 237999999876 22334458899999999999763
Q ss_pred CCCcCCeeEEEEEEeEEEEeccCCcc
Q 020012 141 PPAIEGQANVQVMVHSLNLIEPTSQK 166 (332)
Q Consensus 141 syedkgrs~~eVvVe~I~FL~~k~~~ 166 (332)
. ++ -+|.|+.+..|+..+.+
T Consensus 113 r--~~----rqI~~~~i~~v~d~n~E 132 (159)
T 3kf6_A 113 R--SE----VELIAQSFEELRDPNDE 132 (159)
T ss_dssp S--SS----CEEEEEEEEEECSTHHH
T ss_pred C--CE----EEEEEEEEEECCCcHHH
Confidence 2 22 27889999889876543
No 50
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=77.35 E-value=9.4 Score=37.65 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=54.8
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc--HHHHHHhhcCCCCeEEEEEEeeecCCCcCCe
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--LAHIASSHLKKDDHVHIAGQLTADPPAIEGQ 147 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGk--LAE~~aqyLkKGD~V~VeGrL~t~syedkgr 147 (332)
..|.|.|+|.. +|.. |+ ++.+.|- + .+..++|++-.+ ..+ .++.|..||.|.|+|.+.... .+.
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~~~~~~~-~~~~l~~~~~v~v~G~v~~~~---~~~ 82 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILR-D---KTGLGQVVVDKNSSAFG-ISQELTQESVIQVRGIVKADK---RAP 82 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEECTTSTTHH-HHTTCCTTCEEEEEEEEEECS---SSG
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCChHHHH-HHHhCCCCCEEEEEEEEEecC---CCC
Confidence 35999999975 4433 55 4444443 2 345588888653 222 236799999999999998664 122
Q ss_pred eEEEEEEeEEEEeccC
Q 020012 148 ANVQVMVHSLNLIEPT 163 (332)
Q Consensus 148 s~~eVvVe~I~FL~~k 163 (332)
..++|.|+++..|...
T Consensus 83 ~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 83 RGIELHAEEITLLSKA 98 (429)
T ss_dssp GGEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 3689999999999865
No 51
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=77.26 E-value=8.7 Score=38.91 Aligned_cols=79 Identities=11% Similarity=0.262 Sum_probs=54.3
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHH---H---HHHhhcCCCCeEEEEEEeeecCCCc
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA---H---IASSHLKKDDHVHIAGQLTADPPAI 144 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLA---E---~~aqyLkKGD~V~VeGrL~t~syed 144 (332)
.|.|.|||.. +|. .|+.++.+.|- + .+..|+|++-.+.. + .+.+.|..||.|.|+|.+....
T Consensus 57 ~V~v~Grv~~---~R~--~gkk~~F~~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~--- 124 (521)
T 3bju_A 57 TLKVAGRIHA---KRA--SGGKLIFYDLR-G---EGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK--- 124 (521)
T ss_dssp CEEEEEEEEE---EEE--SSSSEEEEEEE-E---TTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT---
T ss_pred EEEEEEEEEE---Eec--CCCCcEEEEEE-E---CCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC---
Confidence 5999999974 444 35234444444 2 24679998865421 2 2346799999999999998664
Q ss_pred CCeeEEEEEEeEEEEeccC
Q 020012 145 EGQANVQVMVHSLNLIEPT 163 (332)
Q Consensus 145 kgrs~~eVvVe~I~FL~~k 163 (332)
.| .++|.|+++.+|...
T Consensus 125 ~g--e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 KG--ELSIIPYEITLLSPC 141 (521)
T ss_dssp TC--CEEEEEEEEEEEECC
T ss_pred CC--CEEEEEeEEEEeecC
Confidence 12 489999999999754
No 52
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=76.73 E-value=11 Score=37.19 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=58.7
Q ss_pred cccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec--cHHHHHHhhcCCCCeEEEEEEeeecCCCc
Q 020012 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG--DLAHIASSHLKKDDHVHIAGQLTADPPAI 144 (332)
Q Consensus 67 ~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWG--kLAE~~aqyLkKGD~V~VeGrL~t~syed 144 (332)
+.+-++.+.|.|...|... .+|.. .|+|-. ++.-|+|++|. +-...+...|..||.|.|-|.+...
T Consensus 282 ~~~~~~~v~G~V~~~P~~~--~GGHV--~f~l~d----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~g---- 349 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDI--EGGHV--FFEIDT----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKKD---- 349 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEE--TTTEE--EEEEEE----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEETT----
T ss_pred ccCceEEEEEEEecCcEec--cCceE--EEEEEc----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecCC----
Confidence 3577889999999876653 45653 466653 35679999999 4466677889999999999997652
Q ss_pred CCeeEEEEEEeEEEEecc
Q 020012 145 EGQANVQVMVHSLNLIEP 162 (332)
Q Consensus 145 kgrs~~eVvVe~I~FL~~ 162 (332)
.|.++.+..+.-
T Consensus 350 ------tLnvEk~~v~~l 361 (402)
T 3au7_A 350 ------TINLEKIQIVEL 361 (402)
T ss_dssp ------EEEEEEEEEEEC
T ss_pred ------EEEEEEEEEccc
Confidence 588888877754
No 53
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=76.34 E-value=11 Score=37.10 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=54.9
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHH--H--HHHhhcCCCCeEEEEEEeeecCCCcC
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA--H--IASSHLKKDDHVHIAGQLTADPPAIE 145 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLA--E--~~aqyLkKGD~V~VeGrL~t~syedk 145 (332)
..|.|.|+|.. +|.. |+ ++.+.|- + .+..++|++-.+.. + ..++.|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~---~ 83 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWIR-D---STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE---R 83 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC---C
Confidence 35999999975 4433 55 4444333 2 34569999854321 1 2336799999999999998764 1
Q ss_pred CeeEEEEEEeEEEEeccC
Q 020012 146 GQANVQVMVHSLNLIEPT 163 (332)
Q Consensus 146 grs~~eVvVe~I~FL~~k 163 (332)
+...++|.|+++..|...
T Consensus 84 ~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 84 APGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp SGGGEEEEEEEEEEEECC
T ss_pred CCccEEEEEeEEEEeecC
Confidence 223689999999999865
No 54
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=76.04 E-value=11 Score=34.46 Aligned_cols=100 Identities=10% Similarity=0.103 Sum_probs=63.8
Q ss_pred cccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCC-CCeeEEEEEeccHHHHHHhhc-----CCCCeEEEEE
Q 020012 62 IPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAAS-HSLWIPILFEGDLAHIASSHL-----KKDDHVHIAG 135 (332)
Q Consensus 62 I~w~p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~-~T~wI~VvaWGkLAE~~aqyL-----kKGD~V~VeG 135 (332)
+=|.-.-+|.|.++|.|..--+.-....|.-..+..+.++... ....|.|.+--..+ ....| --|..|-|.|
T Consensus 78 ~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~--~~~gl~l~~~~~G~iV~VkG 155 (220)
T 3kf8_A 78 VLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQF--KEVGLTLDKKNYGKIVELEG 155 (220)
T ss_dssp EEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHH--HTTTCCTTSCCTTCEEEEEE
T ss_pred EEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHh--hccCccccccCCCeEEEEEE
Confidence 3344455899999999986443322223444455666777643 34677777654332 22233 3599999999
Q ss_pred Eeeec--CCCcCCeeEEEEEEeEEEEeccC
Q 020012 136 QLTAD--PPAIEGQANVQVMVHSLNLIEPT 163 (332)
Q Consensus 136 rL~t~--syedkgrs~~eVvVe~I~FL~~k 163 (332)
.+.+. .+...++..-||.|+.|.+|+..
T Consensus 156 ~i~~~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 156 EIYNWYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp EEEECCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred EEEeeccccccccccceEEEEEEEEEeccC
Confidence 99974 23233554459999999999876
No 55
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=76.01 E-value=19 Score=35.65 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=55.2
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH--HH--HHHhhcCCCCeEEEEEEeeecCCCcC
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL--AH--IASSHLKKDDHVHIAGQLTADPPAIE 145 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkL--AE--~~aqyLkKGD~V~VeGrL~t~syedk 145 (332)
..|.|.|+|.. +|.. |+ ++.+.|- + .+..++|++-.+. .+ ..++.|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~Lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~---~ 83 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIR-D---RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP---K 83 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT---T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC---C
Confidence 36899999975 3432 44 4444443 2 2456999887653 11 2356799999999999998653 1
Q ss_pred CeeEEEEEEeEEEEeccCC
Q 020012 146 GQANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 146 grs~~eVvVe~I~FL~~k~ 164 (332)
....++|.|+++..|....
T Consensus 84 ~~~~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 84 AKLGFEILPEKIVVLNRAE 102 (438)
T ss_dssp STTSEEEEEEEEEEEECBC
T ss_pred CCCcEEEEEEEEEEEecCC
Confidence 1125899999999997653
No 56
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=74.89 E-value=12 Score=36.87 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=52.8
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcC-CCCeEEEEEEeeecCCCcCCee
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLK-KDDHVHIAGQLTADPPAIEGQA 148 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLk-KGD~V~VeGrL~t~syedkgrs 148 (332)
..|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-. +.|. .||.|.|+|.+..+. .+..
T Consensus 14 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~---~~~~ 73 (422)
T 1n9w_A 14 QEVELLGFLHW---RRDL--GR-IQFLLLR-D---RSGVVQVVTGG-------LKLPLPESALRVRGLVVENA---KAPG 73 (422)
T ss_dssp SEEEEEEEEEE---EEEC--SS-EEEEEEE-E---TTEEEEEEEES-------CCCCCTTCEEEEEEEEEECT---TSTT
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCEEEEEEEEc-------cccCCCCCEEEEEEEEEecC---CCCc
Confidence 46999999975 4443 55 4444443 2 34558888754 6799 999999999998764 1223
Q ss_pred EEEEEEeEEEEeccC
Q 020012 149 NVQVMVHSLNLIEPT 163 (332)
Q Consensus 149 ~~eVvVe~I~FL~~k 163 (332)
.++|.|+++..|...
T Consensus 74 ~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 74 GLEVQAKEVEVLSPA 88 (422)
T ss_dssp SEEEEEEEEEEEECC
T ss_pred cEEEEEeEEEEeccC
Confidence 589999999999865
No 57
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=73.04 E-value=11 Score=33.23 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCCeEE--EC-CCCcEEEEEEEEEcCCCCCe-eEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCC
Q 020012 71 SVNLIGHVDAPVQFQ--TS-SDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (332)
Q Consensus 71 sV~LIGrLg~DPElr--~T-~sG~~vA~fsLAv~~~~~T~-wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~sy 142 (332)
.|.+||.|..=-+++ .+ .+|+....-.+... +++. -|+|++||+.|+.+. ...|+.|.+.|-.. ..|
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~--D~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~v-~~f 210 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLM--DTSGKVVTATLWGEDADKFD--GSRQPVLAIKGARV-SDF 210 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEE--CTTCCEEEEEEEHHHHHHCC--CTTCCEEEEEEEEE-ECT
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEE--CCCCCEEEEEEEchhhhhcc--cCCCCEEEEEEEEE-Eec
Confidence 488999987333322 22 25654333333322 3344 599999999998764 57888777776433 445
No 58
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=72.59 E-value=18 Score=37.01 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=56.8
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc--H---HHHHHhhcCCCCeEEEEEEeeecCCCc
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--L---AHIASSHLKKDDHVHIAGQLTADPPAI 144 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGk--L---AE~~aqyLkKGD~V~VeGrL~t~syed 144 (332)
-.|.|-|+|.. +|. .|+ ++.+.|- + .+..|.|++-.+ . .-..++.|..||.|.|+|.+....-..
T Consensus 63 ~~V~v~Gwv~~---~R~--~gk-l~Fi~Lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 132 (548)
T 3i7f_A 63 KTVTIRARVQA---VRG--KGN-MVFLFLR-K---GIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPI 132 (548)
T ss_dssp CEEEEEEEEEE---EEE--CSS-EEEEEEE-E---TTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCC
T ss_pred CEEEEEEEEEE---Eec--CCC-eEEEEEE-E---CCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCccc
Confidence 46899999974 343 354 4444443 2 245888888652 1 112356799999999999998764222
Q ss_pred C--CeeEEEEEEeEEEEeccCC
Q 020012 145 E--GQANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 145 k--grs~~eVvVe~I~FL~~k~ 164 (332)
+ ....++|.|++|..|....
T Consensus 133 ~~~~~~~~El~~~~i~vls~a~ 154 (548)
T 3i7f_A 133 EKATQQDVEIHVTSIAVVSLAE 154 (548)
T ss_dssp TTSSSCSEEEEEEEEEEEECCC
T ss_pred ccCCCCcEEEEEeEEEEEecCC
Confidence 2 2346899999999998653
No 59
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=68.12 E-value=19 Score=36.99 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=55.5
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH--HHhhcCCCCeEEEEEEeeecCCC---cC
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPA---IE 145 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~--~aqyLkKGD~V~VeGrL~t~sye---dk 145 (332)
.|+|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-.+..+. .++.|..||.|.|+|.+..+.-. .+
T Consensus 17 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~ 86 (585)
T 1c0a_A 17 QVTLCGWVNR---RRDL--GS-LIFIDMR-D---REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRD 86 (585)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E---TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTT
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-E---CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccccccc
Confidence 5999999974 3432 43 3334333 2 3456999886554332 34679999999999999876321 11
Q ss_pred -CeeEEEEEEeEEEEeccCC
Q 020012 146 -GQANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 146 -grs~~eVvVe~I~FL~~k~ 164 (332)
..-.++|.|+++..|....
T Consensus 87 ~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 87 MATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp STTTTEEEEEEEEEEEECCC
T ss_pred CCCccEEEEEeEEEEEeccC
Confidence 2234899999999998653
No 60
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=67.66 E-value=18 Score=37.15 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=54.7
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH-HHHHHhhcCCCCeEEEEEEeeecCCCc-C-Ce
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-AHIASSHLKKDDHVHIAGQLTADPPAI-E-GQ 147 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkL-AE~~aqyLkKGD~V~VeGrL~t~syed-k-gr 147 (332)
.|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-.+. +-..++.|..||.|.|+|.+..+.-.. + ..
T Consensus 18 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ 87 (580)
T 1l0w_A 18 EVVLEGWVNR---RRDL--GG-LIFLDLR-D---REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLAT 87 (580)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E---TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTT
T ss_pred EEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCC
Confidence 5999999974 3432 43 3333333 2 3456888885542 112346799999999999998775111 1 22
Q ss_pred eEEEEEEeEEEEeccCC
Q 020012 148 ANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 148 s~~eVvVe~I~FL~~k~ 164 (332)
-.++|.|+++..|....
T Consensus 88 ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 88 GRVEVELSALEVLAEAK 104 (580)
T ss_dssp TTEEEEEEEEEEEECCC
T ss_pred ccEEEEEeEEEEeccCc
Confidence 35899999999998653
No 61
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=67.62 E-value=25 Score=35.36 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=53.6
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc-HHH---HHHhhcCCCCeEEEEEEeeecCCCcCC
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---IASSHLKKDDHVHIAGQLTADPPAIEG 146 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGk-LAE---~~aqyLkKGD~V~VeGrL~t~syedkg 146 (332)
.|.|.|+|.. +|.. |+ ++.+.|- + .+..|+|++-.+ +.+ ...+.|..||.|.|+|.+.... .+
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~F~~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~---~g 124 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AGFAHIQ-D---VTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK---VG 124 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT---TC
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-E---CCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC---CC
Confidence 5999999975 4433 54 3333333 3 235799988654 222 2336799999999999998652 12
Q ss_pred eeEEEEEEeEEEEeccC
Q 020012 147 QANVQVMVHSLNLIEPT 163 (332)
Q Consensus 147 rs~~eVvVe~I~FL~~k 163 (332)
.++|.|+++.+|...
T Consensus 125 --e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 125 --ELSIKVSSYEFLTKA 139 (493)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred --cEEEEEEEEEEcccc
Confidence 589999999999865
No 62
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=67.13 E-value=17 Score=28.88 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=42.9
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEE-EEeee
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~Ve-GrL~t 139 (332)
...|.++|+|-.--+ ..+|..+....|+ ++|--|++++|++- .+..++.|+.|.|. |....
T Consensus 15 ~~~v~v~~~V~~~~~---~~~~~~~~~~~l~----DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 15 GQWANLKAKVIQLWE---NTHESISQVGLLG----DETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp TCEEEEEEEEEEEEE---CCCSSEEEEEEEE----CTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeEc---CCCCeEEEEEEEE----CCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEE
Confidence 467899999875322 3345555445555 56778999999943 23579999999999 67765
No 63
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=63.54 E-value=27 Score=35.16 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=53.2
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc-HHH---H-HHhhcCCCCeEEEEEEeeecCCCcC
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---I-ASSHLKKDDHVHIAGQLTADPPAIE 145 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGk-LAE---~-~aqyLkKGD~V~VeGrL~t~syedk 145 (332)
.|.|.|+|.. +|.. |+ ++.+.|- + .+..|.|++-.+ +.+ . ..+.|..||.|.|+|.+.... .
T Consensus 66 ~V~v~Gwv~~---~R~~--gk-~~F~~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~---~ 132 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GK-ASFVTLQ-D---VGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ---T 132 (504)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT---T
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-E---CCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC---C
Confidence 5999999975 4433 44 3333333 3 235789888644 211 1 346799999999999998652 1
Q ss_pred CeeEEEEEEeEEEEeccC
Q 020012 146 GQANVQVMVHSLNLIEPT 163 (332)
Q Consensus 146 grs~~eVvVe~I~FL~~k 163 (332)
+ .++|.|+++.+|...
T Consensus 133 g--e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 133 G--ELSIHCTELRLLTKA 148 (504)
T ss_dssp C--CEEEEEEEEEEEECC
T ss_pred c--eEEEEEEEEEEeccc
Confidence 2 589999999999865
No 64
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=59.47 E-value=41 Score=34.27 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=52.9
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH-H-H--HHHhhcCCCCeEEEEEEeeecCCCcCC
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-A-H--IASSHLKKDDHVHIAGQLTADPPAIEG 146 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkL-A-E--~~aqyLkKGD~V~VeGrL~t~syedkg 146 (332)
.|.|.|+|-. +|.. |+ ++.+.|- + .+.-|.|++-.+. . + ...+.|..||.|.|+|.+.... .|
T Consensus 88 ~V~v~GwV~~---~R~~--Gk-~~Fi~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---~g 154 (529)
T 4ex5_A 88 EVAIAGRMML---KRVM--GK-ASFATVQ-D---GSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN---KG 154 (529)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-C---SSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---TS
T ss_pred EEEEEEEEEe---eecC--CC-eEEEEEE-e---CCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC---CC
Confidence 5999999974 3433 55 3333332 2 2357888886542 1 1 2345699999999999997532 12
Q ss_pred eeEEEEEEeEEEEeccCC
Q 020012 147 QANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 147 rs~~eVvVe~I~FL~~k~ 164 (332)
.++|.|++|.+|....
T Consensus 155 --elel~~~~i~vLs~a~ 170 (529)
T 4ex5_A 155 --ELSVKCTQLRLLAKAL 170 (529)
T ss_dssp --CEEEEEEEEEEEECCS
T ss_pred --cEEEEEEEEEEEecCC
Confidence 5889999999997653
No 65
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=54.53 E-value=8.6 Score=32.84 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.6
Q ss_pred eEEEEEeccHHHHHHhhcCCCCeEEEE
Q 020012 108 WIPILFEGDLAHIASSHLKKDDHVHIA 134 (332)
Q Consensus 108 wI~VvaWGkLAE~~aqyLkKGD~V~Ve 134 (332)
=++|++|+.-|..|.++|+.||-|.+.
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEE
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEE
Confidence 479999999999999999999999863
No 66
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=52.64 E-value=35 Score=30.95 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=37.7
Q ss_pred CCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCC--cC-Ce--eEEEEEEeEEEEec
Q 020012 105 HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA--IE-GQ--ANVQVMVHSLNLIE 161 (332)
Q Consensus 105 ~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~sye--dk-gr--s~~eVvVe~I~FL~ 161 (332)
-+--+.|.+-++|.+ .++.||+|.|.|-+...... .+ +. ..+-|.|.+|..++
T Consensus 209 ~Prsi~v~l~~dLvd----~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 209 LPRQLEIILEDDLVD----SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CCCEEEEEEEGGGTT----SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred CCcEEEEEEccCccC----cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 357899999999865 67999999999999876543 11 23 34456666666553
No 67
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=50.61 E-value=15 Score=35.77 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCCeEEE--C-CCCc--EEEEEEEEEcCCCCC-eeEEEEEeccHHHHHHh--hcCCCCeEEEEEEeeecCC
Q 020012 71 SVNLIGHVDAPVQFQT--S-SDGK--HWAGTVIVQHAASHS-LWIPILFEGDLAHIASS--HLKKDDHVHIAGQLTADPP 142 (332)
Q Consensus 71 sV~LIGrLg~DPElr~--T-~sG~--~vA~fsLAv~~~~~T-~wI~VvaWGkLAE~~aq--yLkKGD~V~VeGrL~t~sy 142 (332)
.|.+||.|..=-+++. + .+|+ ....+.|. +++ .-|+|++||+.|+.+.. ....|+.|.|.|-. ...|
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~----D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~k-V~~f 209 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLV----DQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVK-VGDF 209 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEE----CTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCE-EECT
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEE----eCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEE-Eeec
Confidence 4778888774333322 2 2465 33344444 333 47999999999987553 26788888888743 3346
Q ss_pred Cc
Q 020012 143 AI 144 (332)
Q Consensus 143 ed 144 (332)
.+
T Consensus 210 ~G 211 (444)
T 4gop_C 210 GG 211 (444)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 68
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=43.56 E-value=20 Score=31.04 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=54.9
Q ss_pred cccce-EEEEEEeCCCCeEEECCCCcEEEEEEEEEcC--------CCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEe
Q 020012 67 KVANS-VNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--------ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (332)
Q Consensus 67 ~l~Ns-V~LIGrLg~DPElr~T~sG~~vA~fsLAv~~--------~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL 137 (332)
.|-++ |.|-|.|. + |....+| .+..|.|+=-- .-....|.|.+=...+ .-.--|.|.|+|+|
T Consensus 51 ~LdGk~VripGfvv-P--Le~~~~~-~vteFlLVPy~GACiH~PPPPpNQiI~V~~~~g~~-----~~~l~~pvwV~G~L 121 (150)
T 4hsp_A 51 ALDGIEAKLPGYIV-P--LEISEAG-LVTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGVQ-----MDELYQPFWVEGTF 121 (150)
T ss_dssp GGTTEEEEEEEEEE-E--EEECTTS-EEEEEEEESSTTBTTTBCCCCGGGCEEEEEEEEEE-----STTTTSCEEEEEEE
T ss_pred hhCCCEEEeccEEE-E--eccCCCC-cEEEEEEeCCCCcCcCCCCCCCceEEEEECCCCcc-----chhccceEEEEEEE
Confidence 55554 88889986 2 3233333 35677665221 1223777776544332 11233899999999
Q ss_pred eecCCCcC-CeeEEEEEEeEEEEe
Q 020012 138 TADPPAIE-GQANVQVMVHSLNLI 160 (332)
Q Consensus 138 ~t~syedk-grs~~eVvVe~I~FL 160 (332)
++...+.. +.+.|.+.++.|.--
T Consensus 122 ~~~~~~~~l~~~~Y~m~a~~i~~y 145 (150)
T 4hsp_A 122 KVENASSELAAAGYRMQASKVTPY 145 (150)
T ss_dssp ECCCEECSSCEESEEEEEEEEEEC
T ss_pred EEeeecccceeEEeEEeeeEEEEe
Confidence 99998777 888999999998643
No 69
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=41.45 E-value=1e+02 Score=31.91 Aligned_cols=82 Identities=11% Similarity=0.275 Sum_probs=53.5
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH----HHHHHhhcCCCCeEEEEEEeeecCCCc-
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAI- 144 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkL----AE~~aqyLkKGD~V~VeGrL~t~syed- 144 (332)
-.|+|.|+|.+- | ++. |....+ .+-.++|++-.+. +...++.|..|+.|.|+|.+..+.-..
T Consensus 25 ~~V~l~GwV~~~---R---~~~----Fi~LrD---~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~ 91 (617)
T 4ah6_A 25 QEVTLCGWIQYR---R---QNT----FLVLRD---FDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQE 91 (617)
T ss_dssp CEEEEEEEECCC---C---TTT----EEEEEC---SSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCC
T ss_pred CEEEEEEEeeee---c---CeE----EEEEEe---CCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCcccc
Confidence 369999999853 2 122 322222 2357888876543 123456799999999999998764211
Q ss_pred --C-CeeEEEEEEeEEEEeccCC
Q 020012 145 --E-GQANVQVMVHSLNLIEPTS 164 (332)
Q Consensus 145 --k-grs~~eVvVe~I~FL~~k~ 164 (332)
+ ..-.++|.|++|..|....
T Consensus 92 n~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 92 NPKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp CTTSTTTTEEEEEEEEEEEECBC
T ss_pred CccCCCCcEEEEEeEEEEeecCC
Confidence 1 1225899999999997654
No 70
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=32.61 E-value=28 Score=36.77 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=42.4
Q ss_pred ceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCC--CCeEEEEEEeee
Q 020012 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKK--DDHVHIAGQLTA 139 (332)
Q Consensus 70 NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkK--GD~V~VeGrL~t 139 (332)
..|++.|.|..-..... .+... +.+.+. +.+..+.+++|+.- .+.+.|+. |+.|+|.|++..
T Consensus 166 ~~~~~~~~v~~~~~~~~--~~~~~--~~~~~~--d~~~~~~~~~f~~~--~~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 166 EKVTTQGKIVSVETKKF--QNMNI--LTAVLS--DGLVHVPLKWFNQD--YLQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCCEEEECCCCCEEEEC--SSCEE--EEEEEC--CSSCCEEEEECSCC--TTHHHHHTTCSSCEEEEEEECS
T ss_pred CEEEEEEEEEEEEeecC--CCCeE--EEEEEE--ECCceEEEEEECcH--HHHhhCccCCCCEEEEEEEEEE
Confidence 37899999997655433 23333 333333 33446889999842 45667889 999999999976
No 71
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=31.69 E-value=53 Score=30.24 Aligned_cols=73 Identities=18% Similarity=0.064 Sum_probs=49.5
Q ss_pred cceEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC
Q 020012 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (332)
Q Consensus 69 ~NsV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~syedk 145 (332)
-..|.+||-|..--..+.+.+...++.++|.-. +. .-+.|.+|.+..+.+-.-.+.||.|.+. +++...|.++
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~-S~--~gl~v~iF~~~~~~LP~v~~~GDII~l~-~vki~~~~g~ 87 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQ-TN--VKLTCLLFSGNYEALPIIYKNGDIVRFH-RLKIQVYKKE 87 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECT-TC--CEEEEEEEESSGGGSCCCCSTTCEEEEE-EEEEEEETTE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcC-CC--CCEEEEEECCChHHCCCCCCCCCEEEEE-EEEEEEECCe
Confidence 446899999974333445554577777777632 22 2399999988777666656999988887 4555667555
No 72
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=31.38 E-value=60 Score=29.66 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=36.1
Q ss_pred CeeEEEEEeccHHHHHHhhcCCCCeEEEEEEeeecCCCcC-CeeEEEEEEeEEEEec
Q 020012 106 SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE-GQANVQVMVHSLNLIE 161 (332)
Q Consensus 106 T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~t~syedk-grs~~eVvVe~I~FL~ 161 (332)
+--+.|.+-++|.+ .++.||+|.|.|-+.... .+. .-..+-|.|..|...+
T Consensus 197 Prsi~V~l~~dLvd----~~~PGDrV~vtGI~~~~~-~~~~~~~~~~l~a~~I~~~~ 248 (279)
T 1ltl_A 197 PRQITVVLEDDLVD----TLTPGDIVRVTGTLRTVR-DERTKRFKNFIYGNYTEFLE 248 (279)
T ss_dssp CCEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE-ETTTTEEEEEEEEEECCBC-
T ss_pred CeEEEEEEcccccC----ccCCCCEEEEEEEEEEee-CCCCceEEEEEEEEEEEEec
Confidence 57899999999865 678999999999998763 222 3344556666665543
No 73
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=29.96 E-value=40 Score=28.47 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=49.7
Q ss_pred eeeeeCCccccCCccc-cccccccCCceeeccCCCCCCCCCccccCccccceEEEEEEeCCCCeEEECCCCcEEEEEEEE
Q 020012 21 RIILYSPAHFTRPFSS-RAHQFTKATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIV 99 (332)
Q Consensus 21 ~~~~~~~~~~~~~~st-~~~~~~~~~~~~~~~~~~~~prP~tI~w~p~l~NsV~LIGrLg~DPElr~T~sG~~vA~fsLA 99 (332)
.+.+..|+.|...... ....-..-.+.|... .+|.| +|.|... .-.++.....+..+....+|.........
T Consensus 100 ~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~---G~P~P-~v~W~~~---~~~~~~~~~~~~r~~~~~~g~l~il~i~~ 172 (203)
T 4fa8_A 100 HLSVVKPLTLSVHSERSQFPDFSVLTVTCTVN---AFPHP-HVQWLMP---EGVEPAPTAANGGVMKEKDGSLSVAVDLS 172 (203)
T ss_dssp EEEEEEEEEEEEEEEECCSSCSCCEEEEEEEE---EESCC-EEEECCC---------------CCEECTTSCEEEEEEEE
T ss_pred EEEecCCceeeecceeEEEcCCCEEEEEEEcC---CCCCC-EEEEEEC---CeeecCcccccceEEEeCCCCEEEEEECC
Confidence 3444556555433222 222212225678754 46766 7999542 11222223334455666788754333233
Q ss_pred EcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEEEee
Q 020012 100 QHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (332)
Q Consensus 100 v~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeGrL~ 138 (332)
+.. .+.--..|+|-+..++. ..|+|+|.|.
T Consensus 173 v~~-~D~G~YtC~A~N~~G~a--------~~v~vs~y~s 202 (203)
T 4fa8_A 173 LPK-PWHLPVTCVGKNDKEEA--------HGVYVSGYLS 202 (203)
T ss_dssp ECS-SCCCCEEEEEESSSCEE--------EEEEEECCC-
T ss_pred CCH-HHCEEEEEEEEcCCCEE--------EEEEEEEEEC
Confidence 433 44556799998876642 2578888764
No 74
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=28.11 E-value=1.1e+02 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=21.8
Q ss_pred ccHHHHHHhhcCCCCeEEEEEEeeecC
Q 020012 115 GDLAHIASSHLKKDDHVHIAGQLTADP 141 (332)
Q Consensus 115 GkLAE~~aqyLkKGD~V~VeGrL~t~s 141 (332)
|.....+.++++.||.|.|.|-...-.
T Consensus 83 G~~S~~l~~~l~~G~~v~v~gP~G~~~ 109 (243)
T 4eh1_A 83 GLVSHYLHNNVKVGDSVKLYAPAGDFF 109 (243)
T ss_dssp CHHHHHHHHHCCTTCEEEEEEEECSCC
T ss_pred CeehhHHHhcCCCCCEEEEEccCcccC
Confidence 667777878899999999999765433
No 75
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=23.28 E-value=81 Score=28.09 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=42.3
Q ss_pred eEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhcCCCCeEEEEE
Q 020012 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (332)
Q Consensus 71 sV~LIGrLg~DPElr~T~sG~~vA~fsLAv~~~~~T~wI~VvaWGkLAE~~aqyLkKGD~V~VeG 135 (332)
...++|-|....+.+.+.+|+.++...|..=. .....+.|-+||+..+. .-.+..|+.|+|-.
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~-~~~~~V~lfLFg~a~~~-~~k~~~G~ViaiLN 119 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK-DLDKYISLFLFGDVHKE-HWKTDQGTVIGLLN 119 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS-STTCCEEEEECHHHHHH-HTTCCTTEEEEEES
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC-CCCcEEEEEEechHHHH-hcCcCCceEEEEEC
Confidence 57889999988888888899987777665211 22367999999998877 33589999999865
Done!