BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020013
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 29/283 (10%)
Query: 55 IRKTRSLTERPFGVGVVLAFPHNENI-KAILSEKVAVLQVSWG---EYSEELVLEAHSAG 110
I K +SLT++PFGV ++L P E+I ++ E V V+ G +Y E H AG
Sbjct: 55 IDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGNPSKYMERF----HEAG 110
Query: 111 VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII 170
+ V+P V S A++ G DA+I +G EAGGH+ G ++ + +V + IP+I
Sbjct: 111 IIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHI----GKLTTMTLVRQVATAISIPVI 166
Query: 171 AAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV---EMDKTEYTDVFG 227
AAGGI D G A LGA+ + +GTRFV ++ES AHP YK K++ ++D T FG
Sbjct: 167 AAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDIDTTISAQHFG 226
Query: 228 RARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
A KN + E+ + + +E AG +
Sbjct: 227 HA--------------VRAIKNQLTRDFELAEKDAFKQEDPDLEIFEQMGAGALAKAVVH 272
Query: 288 GDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTKFS 330
GD+D + AG+ GL+ + A E++K L GA + + S
Sbjct: 273 GDVDGGSVMAGQIAGLVSKEETAEEILKDLYYGAAKKIQEEAS 315
>pdb|3BO9|A Chain A, Crystal Structure Of Putative Nitroalkan Dioxygenase
(Tm0800) From Thermotoga Maritima At 2.71 A Resolution
pdb|3BO9|B Chain B, Crystal Structure Of Putative Nitroalkan Dioxygenase
(Tm0800) From Thermotoga Maritima At 2.71 A Resolution
Length = 326
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 135/273 (49%), Gaps = 28/273 (10%)
Query: 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN-IKAILSEKVAVLQVSWGEYSEELVLEA 106
PD LR I + R T++PFGV ++L P ++ +K + EKV V+ G ++ + E
Sbjct: 62 PDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGNPTK-YIREL 120
Query: 107 HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRD 166
G KV+P V S AR AG DA+I +G E+GGH+ G ++ +V + +
Sbjct: 121 KENGTKVIPVVASDSLARXVERAGADAVIAEGXESGGHI----GEVTTFVLVNKVSRSVN 176
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVF 226
IP+IAAGGI D RG AA +LGA+ + GTRFVAS ES HP YK K+V K D
Sbjct: 177 IPVIAAGGIADGRGXAAAFALGAEAVQXGTRFVASVESDVHPVYKEKIV---KASIRDTV 233
Query: 227 GRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTT 286
G P RVL+TPF E E P L G++
Sbjct: 234 VTGAKLGHPARVLRTPFARKI-----QEXEFENPXQAE----------EXLVGSLRRAVV 278
Query: 287 TGDIDSMVMFAGEGVGLIREILPAGEVVKQLVE 319
GD++ G+ GLI EI P VKQ++E
Sbjct: 279 EGDLERGSFXVGQSAGLIDEIKP----VKQIIE 307
>pdb|2GJL|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase
pdb|2GJN|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase Complexed
With Fmn And Substrate
Length = 328
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 140/298 (46%), Gaps = 36/298 (12%)
Query: 47 APDYLRDLIRKTRSLTERPFGVGVVL-----AFPHNENIKAILSEKVAVLQVSWGEYSEE 101
+P+ L I + R LT+RPFGV + L P+ E AI+ + V++ + + E
Sbjct: 51 SPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDPGEH 110
Query: 102 LVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGL--ISLLPMVV 159
+ E GVKV+ + + A KA GVDA+ + G E GH G+D + + LLP
Sbjct: 111 IA-EFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHP-GEDDIPGLVLLPAAA 168
Query: 160 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDK 219
+ + +PIIA+GG D RG VAAL+LGA I +GTRF+A+ E HP K + D+
Sbjct: 169 NRL---RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADE 225
Query: 220 TEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPII-----GRSTIHGIEKKI 274
TD+ R+ N + N ++Q ++ G + I +
Sbjct: 226 -RSTDLIMRS--------------LRNTARVA--RNAISQEVLAIEARGGAGYADIAALV 268
Query: 275 HRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTKFSGL 332
G V GD D + AG GLI + E+++ +VE A+ LV + G+
Sbjct: 269 SGQRGR--QVYQQGDTDLGIWSAGMVQGLIDDEPACAELLRDIVEQARQLVRQRLEGM 324
>pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
pdb|2Z6I|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
Length = 332
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 137/283 (48%), Gaps = 29/283 (10%)
Query: 55 IRKTRSLTERPFGVGVVLAFPHNENI-KAILSEKVAVLQVSWG---EYSEELVLEAHSAG 110
I K +SLT++PFGV + L P E+I ++ E V V+ G +Y E H AG
Sbjct: 55 IDKIKSLTDKPFGVNIXLLSPFVEDIVDLVIEEGVKVVTTGAGNPSKYXERF----HEAG 110
Query: 111 VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII 170
+ V+P V S A++ G DA+I +G EAGGH IG+ +L+ V I IP+I
Sbjct: 111 IIVIPVVPSVALAKRXEKIGADAVIAEGXEAGGH-IGKLTTXTLVRQVATAIS---IPVI 166
Query: 171 AAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV---EMDKTEYTDVFG 227
AAGGI D G A LGA+ + +GTRFV ++ES AHP YK K++ ++D T FG
Sbjct: 167 AAGGIADGEGAAAGFXLGAEAVQVGTRFVVAKESNAHPNYKEKILKARDIDTTISAQHFG 226
Query: 228 RARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTT 287
A KN + E+ + + +E AG +
Sbjct: 227 HA--------------VRAIKNQLTRDFELAEKDAFKQEDPDLEIFEQXGAGALAKAVVH 272
Query: 288 GDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGAQLLVHTKFS 330
GD+D + AG+ GL+ + A E++K L GA + + S
Sbjct: 273 GDVDGGSVXAGQIAGLVSKEETAEEILKDLYYGAAKKIQEEAS 315
>pdb|3BW4|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 146/359 (40%), Gaps = 75/359 (20%)
Query: 9 FEYGIVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERPFGV 68
F IVQAP+ +S P+ A ++ D + I++ R LT RPFGV
Sbjct: 9 FPLPIVQAPMAGGVSVPQLAAAVCEAGGLGFL-AAGYKTADGMYQEIKRLRGLTGRPFGV 67
Query: 69 GVVLAFPH------------------------------------NENIKAILSEKVAVLQ 92
V + P + + +L + V V+
Sbjct: 68 NVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVS 127
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-----IG 147
+G E++ AG + + +EAR AG DA+I QG EAGGH
Sbjct: 128 FHFGVPDREVIARLRRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSS 187
Query: 148 QD-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202
+D GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++
Sbjct: 188 EDDGAGIGLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATD 244
Query: 203 ESYAHPEYKRKLVE--MDKTEYTDVFGRARWPGAPHRVLQTPFF-SNWKNIPAHENEVNQ 259
ES A +KR L + +T T F G P R L F + PA +V
Sbjct: 245 ESGAPGPHKRALTDPLFARTRLTRAF-----TGRPARSLVNRFLREHGPYAPAAYPDV-- 297
Query: 260 PIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 318
H + + + A GD M ++AG+G + RE LPAG +V+ L
Sbjct: 298 --------HHLTSPLRKAA------AKAGDAQGMALYAGQGHRMARE-LPAGRLVEVLA 341
>pdb|3BW2|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 146/359 (40%), Gaps = 75/359 (20%)
Query: 9 FEYGIVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERPFGV 68
F IVQAP+ +S P+ A ++ D + I++ R LT RPFGV
Sbjct: 9 FPLPIVQAPMAGGVSVPQLAAAVCEAGGLGFL-AAGYKTADGMYQEIKRLRGLTGRPFGV 67
Query: 69 GVVLAFPH------------------------------------NENIKAILSEKVAVLQ 92
V + P + + +L + V V+
Sbjct: 68 NVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVS 127
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-----IG 147
+G E++ AG + + +EAR AG DA+I QG EAGGH
Sbjct: 128 FHFGVPDREVIARLRRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSS 187
Query: 148 QD-----GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202
+D GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++
Sbjct: 188 EDDGAGIGLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATD 244
Query: 203 ESYAHPEYKRKLVE--MDKTEYTDVFGRARWPGAPHRVLQTPFF-SNWKNIPAHENEVNQ 259
ES A +KR L + +T T F G P R L F + PA +V
Sbjct: 245 ESGAPGPHKRALTDPLFARTRLTRAF-----TGRPARSLVNRFLREHGPYAPAAYPDV-- 297
Query: 260 PIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 318
H + + + A GD M ++AG+G + RE LPAG +V+ L
Sbjct: 298 --------HHLTSPLRKAA------AKAGDAQGMALWAGQGHRMARE-LPAGRLVEVLA 341
>pdb|3BW3|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 145/359 (40%), Gaps = 75/359 (20%)
Query: 9 FEYGIVQAPLGPDISGPEXXXXXXXXXXXXXXRAPDWEAPDYLRDLIRKTRSLTERPFGV 68
F IVQAP+ +S P+ A ++ D + I++ R LT RPFGV
Sbjct: 9 FPLPIVQAPMAGGVSVPQLAAAVCEAGGLGFL-AAGYKTADGMYQEIKRLRGLTGRPFGV 67
Query: 69 GVVLAFPH------------------------------------NENIKAILSEKVAVLQ 92
V + P + + +L + V V+
Sbjct: 68 NVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVS 127
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGG----HVIGQ 148
+G E++ AG + + +EAR AG DA+I QG EAGG H
Sbjct: 128 FHFGVPDREVIARLRRAGTLTLVTATTPEEARAVEAAGADAVIAQGVEAGGDQGTHRDSS 187
Query: 149 D------GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202
+ GL+SLL V + + DIP++AAGGI+ A L+ GA LGT F+A++
Sbjct: 188 EDDGAGIGLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATD 244
Query: 203 ESYAHPEYKRKLVE--MDKTEYTDVFGRARWPGAPHRVLQTPFF-SNWKNIPAHENEVNQ 259
ES A +KR L + +T T F G P R L F + PA +V
Sbjct: 245 ESGAPGPHKRALTDPLFARTRLTRAF-----TGRPARSLVNRFLREHGPYAPAAYPDV-- 297
Query: 260 PIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLV 318
H + + + A GD M ++AG+G + RE LPAG +V+ L
Sbjct: 298 --------HHLTSPLRKAA------AKAGDAQGMALWAGQGHRMARE-LPAGRLVEVLA 341
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 85 SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH 144
S+ ++ Q++ +Y +E G VV +A+ ++AGVDA+ V G G
Sbjct: 276 SQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAA----QAKNLIDAGVDALRV-GMGCGSI 330
Query: 145 VIGQDGLISLLPMVVDLIGDRD------IPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198
I Q+ L P + + +P+IA GGI + AL+LGA + +G+
Sbjct: 331 CITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLL 390
Query: 199 VASEES 204
A+ E+
Sbjct: 391 AATTEA 396
>pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI0|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI1|A Chain A, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
pdb|3DI1|B Chain B, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
Length = 295
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA----RGYVAALSLG 188
AIIV G A + D +L V+DL+ D+ +P+IA G D + + A +LG
Sbjct: 40 AIIVNGTTAESPTLTTDEKERILKTVIDLV-DKRVPVIAGTGTNDTEKSIQASIQAKALG 98
Query: 189 AQGICLGTRF 198
A I L T +
Sbjct: 99 ADAIMLITPY 108
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRD------IPIIAAGGI 175
+A+ ++AGVDA+ V G +G I Q+ L P + + +P+IA GGI
Sbjct: 309 QAKNLIDAGVDALRV-GMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGI 367
Query: 176 VDARGYVAALSLGAQGICLGTRFVASEES 204
+ AL+LGA + +G+ A+ E+
Sbjct: 368 QNVGHIAKALALGASTVMMGSLLAATTEA 396
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
D+PIIA GGI + V AL+ GA+ + +G+ F +EE+
Sbjct: 340 DVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEA 378
>pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
Length = 292
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA----RGYVAALSLG 188
AIIV G A + D +L V+DL+ D+ +P+IA G D + + A +LG
Sbjct: 39 AIIVNGTTAESPTLTTDEKELILKTVIDLV-DKRVPVIAGTGTNDTEKSIQASIQAKALG 97
Query: 189 AQGICLGTRF 198
A I L T +
Sbjct: 98 ADAIMLITPY 107
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPM------VVDLIGDRDIPIIAAGGI 175
+A+ ++AGVD + V G G I Q+ + P V + +PIIA GGI
Sbjct: 309 QAKNLIDAGVDGLRV-GMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGI 367
Query: 176 VDARGYVAALSLGAQGICLGTRFVASEES 204
V AL+LGA + +G+ A+ E+
Sbjct: 368 QTVGHVVKALALGASTVMMGSLLAATTEA 396
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
D+AR+AV G++ I+V A + G I +LP +V+ + + + + GG+
Sbjct: 264 DDAREAVKHGLNGILVSNHGAR-QLDGVPATIDVLPEIVEAVEGK-VEVFLDGGVRKGTD 321
Query: 181 YVAALSLGAQGICLG 195
+ AL+LGA+ + +G
Sbjct: 322 VLKALALGAKAVFVG 336
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
D+AR+AV G++ I+V A + G I +LP +V+ + + + + GG+
Sbjct: 259 DDAREAVKHGLNGILVSNHGAR-QLDGVPATIDVLPEIVEAVEGK-VEVFLDGGVRKGTD 316
Query: 181 YVAALSLGAQGICLG 195
+ AL+LGA+ + +G
Sbjct: 317 VLKALALGAKAVFVG 331
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180
D+AR+AV G++ I+V A + G I +LP +V+ + + + + GG+
Sbjct: 242 DDAREAVKHGLNGILVSNHGAR-QLDGVPATIDVLPEIVEAVEGK-VEVFLDGGVRKGTD 299
Query: 181 YVAALSLGAQGICLG 195
+ AL+LGA+ + +G
Sbjct: 300 VLKALALGAKAVFVG 314
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK-----LVEMDKTE 221
IPI+ A IV A +LGA + L + + E + EY R +++++
Sbjct: 105 IPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKINDEN 164
Query: 222 YTDVFGR--ARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAG 279
D+ R AR+ G R +W+ + N+ NQ R I I + ++A
Sbjct: 165 DLDIALRIGARFIGICSR--------DWETLEI--NKENQ----RKLISMIPSNVVKVAS 210
Query: 280 TVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGA 321
T ++ +I+ + +I ++ E +K+L+EG+
Sbjct: 211 T--GISERNEIEELRKLGVNAFSIISSLMRNPEKIKELIEGS 250
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 158 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 335 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 390
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 158 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 335 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 390
>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
Length = 258
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK-----LVEMDKTE 221
IPI+ A IV A +LGA + L + + E + EY R ++ ++
Sbjct: 105 IPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXINDEN 164
Query: 222 YTDVFGR--ARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAG 279
D+ R AR+ G R +W+ + N+ NQ R I I + ++A
Sbjct: 165 DLDIALRIGARFIGICSR--------DWETLEI--NKENQ----RKLISMIPSNVVKVAS 210
Query: 280 TVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEGA 321
T ++ +I+ + +I ++ E +K+L+EG+
Sbjct: 211 T--GISERNEIEELRKLGVNAFSIISSLMRNPEKIKELIEGS 250
>pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|B Chain B, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|C Chain C, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
pdb|1PVN|D Chain D, The Crystal Structure Of The Complex Between Imp
Dehydrogenase Catalytic Domain And A Transition State
Analogue Mzp
Length = 376
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 158 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 208 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 263
>pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like
Protein (Np_599840.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.50 A Resolution
Length = 393
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 159 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES----------YAHP 208
+D G R + IIA G I ++ V A++ GA + LG+ +EE+ AHP
Sbjct: 270 LDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHP 329
Query: 209 EYKRKLVEMDKTEYTDV 225
+ R +V TE D+
Sbjct: 330 RFPRGVV----TESVDL 342
>pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|B Chain B, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|C Chain C, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
pdb|1LRT|D Chain D, Crystal Structure Of Ternary Complex Of Tritrichomonas
Foetus Inosine-5'-Monophosphate Dehydrogenase:
Structural Characterization Of Nad+ Site In Microbial
Enzyme
Length = 376
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 158 VVDLIGDRD---------IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
V+D++ +R+ IP+ + GGIV AL++GA I LG F EES
Sbjct: 208 VIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEES 263
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 18/143 (12%)
Query: 97 EYSEELVLEAHSAGVK-VVPQVGSFDEARKAVNAGVDA------IIVQGREAGGHVIGQD 149
E + +++ E + G+ VV + G+ ++ R + + + ++G AGGH +D
Sbjct: 530 EEAVDIIDELNEVGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWED 589
Query: 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-----------LGAQGICLGTRF 198
LL +L +I I GGI LS + GI +GT
Sbjct: 590 LDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAA 649
Query: 199 VASEESYAHPEYKRKLVEMDKTE 221
+A+ E+ P+ K+ LVE TE
Sbjct: 650 MATLEATTSPQVKQLLVETKGTE 672
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|1Y0E|A Chain A, Crystal Structure Of Putative Mannac-6-P Epimerase From
Staphylococcus Aureus (Strain N315)
pdb|1Y0E|B Chain B, Crystal Structure Of Putative Mannac-6-P Epimerase From
Staphylococcus Aureus (Strain N315)
Length = 223
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 89 AVLQVSWGEYSEELV--LEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI 146
A LQ E +ELV + H+ V++ + + +EA+ A G D I +
Sbjct: 96 ATLQQRPKETLDELVSYIRTHAPNVEIXADIATVEEAKNAARLGFDYIGTTLHGYTSYTQ 155
Query: 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195
GQ + + D++ D +IA G ++ Y LG +G
Sbjct: 156 GQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDXYKRVXDLGVHCSVVG 204
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 150 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 209
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 210 LIDSKGYGVGTPMGS 224
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 164 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217
D DIPII GG+ +A+ + GA + +GT A + + P+ KL E+
Sbjct: 239 DVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA--DPFVCPKIIDKLPEL 290
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 185 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 244
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 245 LIDSKGYGVGTPMGS 259
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/75 (17%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGYVAALSLGA 189
++D++GY +G+
Sbjct: 211 LIDSKGYGVGTPMGS 225
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/67 (17%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174
++ ++D+ +++ +++V+ E G V+ D + ++ + R+ + GG
Sbjct: 151 KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGG 210
Query: 175 IVDARGY 181
++D++GY
Sbjct: 211 LIDSKGY 217
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
IP+IA GGI + V AL+ GA + LG+ F ES E
Sbjct: 360 IPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETE 402
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 73 AFPHNEN-IKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------VGSFDEAR 124
A P NE +KA++ V VL + E VL+ P V + + AR
Sbjct: 228 AAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGAR 287
Query: 125 KAVNAGVDAIIV---QGREAGGHVIGQDGL--ISLLPMVVDLIGDRDIPIIAAGGIVDAR 179
+ AGV A+ V G ++ G+ I+ + + + IP+IA GGI +
Sbjct: 288 ALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSG 347
Query: 180 GYVAALSLGAQGICLGTRFVASEES 204
A++ GA + +G+ F +EE+
Sbjct: 348 DISKAIAAGASCVXVGSXFAGTEEA 372
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEES 204
I+ + V + + +I IIA GGI + V A++ GA + +G F ++ES
Sbjct: 242 ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 294
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 73 AFPHNE-NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------VGSFDEAR 124
A P NE +KA++ V VL + E VL+ P V + + AR
Sbjct: 105 AAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGAR 164
Query: 125 KAVNAGVDAIIVQ---GREAGGHVIGQDGL--ISLLPMVVDLIGDRDIPIIAAGGIVDAR 179
+ AGV A+ V G ++ G+ I+ + + + IP+IA GGI +
Sbjct: 165 ALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSG 224
Query: 180 GYVAALSLGAQGICLGTRFVASEES 204
A++ GA + +G+ F +EE+
Sbjct: 225 DISKAIAAGASCVMVGSMFAGTEEA 249
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 73 AFPHNE-NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-------VGSFDEAR 124
A P NE +KA++ V VL + E VL+ P V + + AR
Sbjct: 127 AAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGAR 186
Query: 125 KAVNAGVDAIIVQ---GREAGGHVIGQDGL--ISLLPMVVDLIGDRDIPIIAAGGIVDAR 179
+ AGV A+ V G ++ G+ I+ + + + IP+IA GGI +
Sbjct: 187 ALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSG 246
Query: 180 GYVAALSLGAQGICLGTRFVASEES 204
A++ GA + +G+ F +EE+
Sbjct: 247 DISKAIAAGASCVMVGSMFAGTEEA 271
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
IPIIA GGI + AL++GA + +G+ +EES E
Sbjct: 247 IPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKE 289
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
IP+IA GGI + V AL+ GA + LG+ F ES E
Sbjct: 360 IPVIADGGIKYSGDXVKALAAGAHVVXLGSXFAGVAESPGETE 402
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 124 RKAVNAGVDAIIVQGREAGG--HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181
RK VN D ++ + ++ G V+ + + LP+V AAGG+
Sbjct: 203 RKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVN----------FAAGGVTTPADA 252
Query: 182 VAALSLGAQGICLGTRFVASEESYAHPE-YKRKLVEMDKTEYTD 224
+ LGA G+ +G+ SE +PE Y R +VE T Y D
Sbjct: 253 ALMMHLGADGVFVGSGIFKSE----NPEKYARAIVEA-TTHYED 291
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFG 227
PIIA GGI ++ GA + +G+ F EES + +E D Y + FG
Sbjct: 212 PIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPG------ETIEKDGKLYKEYFG 265
Query: 228 RA 229
A
Sbjct: 266 SA 267
>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1A4Z|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
Length = 499
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 111 VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII 170
V V+P G A A + VD + G GH+I S L V IG + II
Sbjct: 217 VNVIPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLEIGGKSPNII 276
Query: 171 AAGGIVD---ARGYVAALSLGAQGICLGTRFVASEESYAH 207
+ +D + + A Q C G+R E+ YA
Sbjct: 277 MSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYAE 316
>pdb|3TAZ|A Chain A, Crystal Structure Of Nura Bound To Damp And Manganese
pdb|3TAZ|B Chain B, Crystal Structure Of Nura Bound To Damp And Manganese
Length = 471
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 43 PDWEAPDYLRDLIRKTRSLTERPFGVG--------VVLAFPHNENIKAILSEKVAVLQVS 94
P W PD+L R L ++ + V+ NI+ IL +L
Sbjct: 363 PKWSFPDFLLSKFRNIEKLIDKGIHLAYVRFEQGDVIYMLQSTTNIEKILP---LILHHK 419
Query: 95 WGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAI 134
G Y L L H GVK+ S+ EAR + A ++A+
Sbjct: 420 AGGYLRPLQLAHH--GVKI-----SYKEARHTLEALINAL 452
>pdb|3TAI|A Chain A, Crystal Structure Of Nura
pdb|3TAI|B Chain B, Crystal Structure Of Nura
pdb|3TAL|A Chain A, Crystal Structure Of Nura With Manganese
pdb|3TAL|B Chain B, Crystal Structure Of Nura With Manganese
Length = 471
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 43 PDWEAPDYLRDLIRKTRSLTERPFGVG--------VVLAFPHNENIKAILSEKVAVLQVS 94
P W PD+L R L ++ + V+ NI+ IL +L
Sbjct: 363 PKWSFPDFLLSKFRNIEKLIDKGIHLAYVRFEQGDVIYXLQSTTNIEKILP---LILHHK 419
Query: 95 WGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAI 134
G Y L L H GVK+ S+ EAR + A ++A+
Sbjct: 420 AGGYLRPLQLAHH--GVKI-----SYKEARHTLEALINAL 452
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
IPIIA GGI + AL++GA + +G+ +EES E
Sbjct: 208 IPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKE 250
>pdb|2WSU|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|C Chain C, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|D Chain D, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSV|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lactose
pdb|2WT0|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With N-Acetyl-Lactosamine
pdb|2WT1|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lacto-N-Neo-Tetraose
pdb|2WT2|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
pdb|2WT2|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
Length = 343
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 209 EYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSN 246
+++ +L E+D+ +Y +FG H+V TP FS
Sbjct: 295 QFQYRLKELDQIKYVHMFGHVVQTHLEHQVPDTPVFST 332
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine Carboxypeptidase
Cc2672 From Caulobacter Crescentus Cb15 Complexed With
N-Methyl Phosphonate Derivative Of L-Arginine
Length = 403
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 92 QVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAI 134
Q+++ E + +V EAH AG+KV R+AV AGVD I
Sbjct: 203 QLTYEEM-KAVVDEAHMAGIKVAAHAHGASGIREAVRAGVDTI 244
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPM------VVDLIGDRDIPIIAAGG 174
++A + + AG D + + G +G I Q+ + P V + IP IA GG
Sbjct: 334 EQAAQLIAAGADGLRI-GMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGG 392
Query: 175 IVDARGYVAALSLGAQGICLGTRFVASEES---YAHPEYKR 212
I + AL+LGA + +G + ES Y + E KR
Sbjct: 393 IGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKR 433
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPM------VVDLIGDRDIPIIAAGG 174
++A + + AG D + + G +G I Q+ + P V + IP IA GG
Sbjct: 334 EQAAQLIAAGADGLRI-GMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGG 392
Query: 175 IVDARGYVAALSLGAQGICLGTRFVASEES---YAHPEYKR 212
I + AL+LGA + +G + ES Y + E KR
Sbjct: 393 IGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKR 433
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/74 (16%), Positives = 35/74 (47%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175
++ +F++ +++ A++ E + D + + ++ I R+ + GG+
Sbjct: 152 KISTFEKMWAFMSSKPSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGL 211
Query: 176 VDARGYVAALSLGA 189
+D++GY +G+
Sbjct: 212 IDSKGYGIGTPMGS 225
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152
++W + E L+ + V+ V ++ KA GV +++ + G + I
Sbjct: 330 LTWKDIEE---LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSN-QGGRQLDFSRAPI 385
Query: 153 SLLPMVVDLIGDRDIP----IIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHP 208
+L + ++ R++ + GG+ + AL LGA+G+ LG F+ YA+
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANS 440
Query: 209 EYKRKLVE 216
Y R VE
Sbjct: 441 CYGRNGVE 448
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/74 (16%), Positives = 35/74 (47%)
Query: 116 QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175
++ +F++ +++ A++ E + D + + ++ I R+ + GG+
Sbjct: 150 KISTFEKMWAFMSSKPSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGL 209
Query: 176 VDARGYVAALSLGA 189
+D++GY +G+
Sbjct: 210 IDSKGYGIGTPMGS 223
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQ---GREAGGHVIGQD 149
++W + E L+ + V+ V ++ KA GV +++ GR+ +
Sbjct: 330 LTWKDIEE---LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIE 386
Query: 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
L +P++ + + GG+ + AL LGA+G+ LG F+ YA+
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANSC 441
Query: 210 YKRKLVE 216
Y R VE
Sbjct: 442 YGRNGVE 448
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQ---GREAGGHVIGQD 149
++W + E L+ + V+ V ++ KA GV +++ GR+ +
Sbjct: 330 LTWKDIEE---LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIE 386
Query: 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
L +P++ + + GG+ + AL LGA+G+ LG F+ YA+
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANSC 441
Query: 210 YKRKLVE 216
Y R VE
Sbjct: 442 YGRNGVE 448
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQ---GREAGGHVIGQD 149
++W + E L+ + V+ V ++ KA GV +++ GR+ +
Sbjct: 330 LTWKDIEE---LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIE 386
Query: 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
L +P++ + + GG+ + AL LGA+G+ LG F+ YA+
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANSC 441
Query: 210 YKRKLVE 216
Y R VE
Sbjct: 442 YGRNGVE 448
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQ---GREAGGHVIGQD 149
++W + E L+ + V+ V ++ KA GV +++ GR+ +
Sbjct: 330 LTWKDIEE---LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIE 386
Query: 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
L +P++ + + GG+ + AL LGA+G+ LG F+ YA+
Sbjct: 387 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANSC 441
Query: 210 YKRKLVE 216
Y R VE
Sbjct: 442 YGRNGVE 448
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 93 VSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQ---GREAGGHVIGQD 149
++W + E L+ + V+ V ++ KA GV +++ GR+ +
Sbjct: 325 LTWKDIEE---LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIE 381
Query: 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPE 209
L +P++ + + GG+ + AL LGA+G+ LG F+ YA+
Sbjct: 382 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANSC 436
Query: 210 YKRKLVE 216
Y R VE
Sbjct: 437 YGRNGVE 443
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178
S ++A + + G D +I+ GG + D IS + ++ + P++ G
Sbjct: 235 SAEDADRCIAEGADGVILSNH--GGRQL--DCAISPMEVLAQSVAKTGKPVLIDSGFRRG 290
Query: 179 RGYVAALSLGAQGICLG 195
V AL+LGA+ + LG
Sbjct: 291 SDIVKALALGAEAVLLG 307
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 123 ARKAVNAGVDAIIVQGREAGGHVIGQ-DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181
ARK GV AI+ G IG G+++ L + +I +P+I GI +
Sbjct: 138 ARKLEELGVHAIM-----PGASPIGSGQGILNPLNLSF-IIEQAKVPVIVDAGIGSPKDA 191
Query: 182 VAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEY------TDVFGRARWPG 233
A+ LGA G+ L T +++ + VE + Y +G A PG
Sbjct: 192 AYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEAGRLSYEAGRIPLKQYGTASSPG 249
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178
S ++A + + G D +I+ GG + D IS + ++ + P++ G
Sbjct: 235 SAEDADRCIAEGADGVILSNH--GGRQL--DCAISPMEVLAQSVAKTGKPVLIDSGFRRG 290
Query: 179 RGYVAALSLGAQGICLG 195
V AL+LGA+ + LG
Sbjct: 291 SDIVKALALGAEAVLLG 307
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 113 VVPQVGSFDEARKAVNAGVDAIIVQ---GREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169
V+ V ++ KA GV +++ GR+ + L +P++ + +
Sbjct: 246 VIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEV 305
Query: 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216
GG+ + AL LGA+G+ LG F+ YA+ Y R VE
Sbjct: 306 FVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANSCYGRNGVE 347
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 113 VVPQVGSFDEARKAVNAGVDAIIVQ---GREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169
V+ V ++ KA GV +++ GR+ + L +P++ + +
Sbjct: 248 VIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEV 307
Query: 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216
GG+ + AL LGA+G+ LG F+ YA+ Y R VE
Sbjct: 308 FVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----YANSCYGRNGVE 349
>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|B Chain B, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|C Chain C, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|D Chain D, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|E Chain E, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|F Chain F, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|G Chain G, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|H Chain H, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
Length = 219
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 164 DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202
++D+ ++ GI AAL LGA+G+ L + V ++
Sbjct: 168 NKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAK 206
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYK 211
I+ + MV D + + +IA GGI + V A++ GA + LG ++E+
Sbjct: 314 ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPG----- 368
Query: 212 RKLVEMDKTEYTDVFGR----ARWPGAPHRVLQTPFFSNWKNIP 251
K V ++ +Y G A G R Q + K +P
Sbjct: 369 -KEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVP 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,933,940
Number of Sequences: 62578
Number of extensions: 411483
Number of successful extensions: 1395
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 106
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)