Query 020013
Match_columns 332
No_of_seqs 301 out of 2312
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03060 NMO: Nitronate monoox 100.0 9.4E-62 2E-66 456.3 28.3 298 2-320 3-330 (330)
2 TIGR03151 enACPred_II putative 100.0 1.1E-58 2.3E-63 430.2 32.4 303 2-327 3-306 (307)
3 COG2070 Dioxygenases related t 100.0 6.4E-55 1.4E-59 407.6 27.2 309 1-329 5-333 (336)
4 cd04743 NPD_PKS 2-Nitropropane 100.0 1.3E-51 2.8E-56 379.0 24.1 233 9-251 1-257 (320)
5 cd04742 NPD_FabD 2-Nitropropan 100.0 1.8E-43 4E-48 335.4 22.9 243 2-249 5-308 (418)
6 TIGR02814 pfaD_fam PfaD family 100.0 6.1E-40 1.3E-44 313.1 24.1 216 2-221 10-279 (444)
7 cd04730 NPD_like 2-Nitropropan 100.0 5.3E-29 1.2E-33 224.0 27.5 221 10-239 2-226 (236)
8 cd00381 IMPDH IMPDH: The catal 99.9 3.3E-26 7.1E-31 214.4 21.1 201 3-210 27-241 (325)
9 PRK08649 inosine 5-monophospha 99.9 3.5E-26 7.6E-31 216.2 20.3 204 5-210 42-300 (368)
10 PRK06843 inosine 5-monophospha 99.9 1.3E-25 2.8E-30 213.1 21.0 203 2-208 34-298 (404)
11 PLN02274 inosine-5'-monophosph 99.9 3.3E-22 7.2E-27 196.8 20.7 132 77-211 250-396 (505)
12 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 1.8E-22 3.9E-27 190.4 17.6 202 5-209 39-298 (369)
13 PTZ00314 inosine-5'-monophosph 99.9 5.9E-21 1.3E-25 187.9 20.1 205 3-211 43-389 (495)
14 cd02809 alpha_hydroxyacid_oxid 99.9 1.3E-20 2.7E-25 175.3 20.0 189 4-203 56-264 (299)
15 PF00478 IMPDH: IMP dehydrogen 99.8 3.4E-19 7.4E-24 166.4 23.4 198 4-206 31-251 (352)
16 cd02808 GltS_FMN Glutamate syn 99.8 2.4E-20 5.1E-25 179.1 14.8 202 3-205 70-324 (392)
17 PRK05437 isopentenyl pyrophosp 99.8 9.1E-20 2E-24 172.6 17.9 186 9-201 59-296 (352)
18 cd02811 IDI-2_FMN Isopentenyl- 99.8 1.2E-19 2.7E-24 170.3 18.5 191 6-203 46-292 (326)
19 TIGR01305 GMP_reduct_1 guanosi 99.8 3.8E-18 8.1E-23 156.6 21.2 195 7-207 42-253 (343)
20 PRK05096 guanosine 5'-monophos 99.8 4.9E-18 1.1E-22 155.8 19.2 193 10-207 46-254 (346)
21 PRK05567 inosine 5'-monophosph 99.8 2.1E-17 4.6E-22 163.2 22.0 201 3-207 34-372 (486)
22 TIGR02151 IPP_isom_2 isopenten 99.8 4.2E-18 9.2E-23 160.4 16.0 191 5-202 46-290 (333)
23 PRK07807 inosine 5-monophospha 99.7 6.3E-17 1.4E-21 158.4 18.0 162 78-245 230-421 (479)
24 PRK05458 guanosine 5'-monophos 99.7 2E-16 4.4E-21 147.0 18.8 189 8-207 35-242 (326)
25 cd02911 arch_FMN Archeal FMN-b 99.7 3.7E-16 8E-21 139.9 18.3 173 12-197 1-222 (233)
26 TIGR01302 IMP_dehydrog inosine 99.7 7.8E-16 1.7E-20 150.6 21.8 129 78-207 227-368 (450)
27 TIGR01306 GMP_reduct_2 guanosi 99.7 2.6E-15 5.5E-20 139.1 20.0 190 8-207 32-239 (321)
28 COG4981 Enoyl reductase domain 99.7 2.9E-15 6.2E-20 142.8 20.6 218 2-221 27-279 (717)
29 cd02922 FCB2_FMN Flavocytochro 99.7 4.3E-15 9.3E-20 139.9 19.7 206 5-216 57-321 (344)
30 PRK01130 N-acetylmannosamine-6 99.7 1.3E-14 2.9E-19 129.3 19.6 164 25-201 26-208 (221)
31 TIGR00737 nifR3_yhdG putative 99.6 1.3E-14 2.8E-19 136.3 17.0 189 7-203 4-230 (319)
32 PRK10415 tRNA-dihydrouridine s 99.6 2.4E-14 5.3E-19 134.3 18.1 189 6-203 5-232 (321)
33 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 5E-14 1.1E-18 138.0 19.8 128 78-207 228-369 (475)
34 PLN02535 glycolate oxidase 99.6 2.2E-13 4.8E-18 128.6 20.7 113 103-217 215-329 (364)
35 PF04131 NanE: Putative N-acet 99.6 1.6E-13 3.5E-18 116.3 17.3 163 26-203 3-181 (192)
36 KOG2550 IMP dehydrogenase/GMP 99.6 4.3E-14 9.3E-19 131.0 14.2 130 77-207 253-395 (503)
37 cd04740 DHOD_1B_like Dihydroor 99.6 4.8E-13 1E-17 124.4 20.9 187 9-201 9-266 (296)
38 cd04737 LOX_like_FMN L-Lactate 99.6 3.9E-13 8.4E-18 126.7 19.6 99 101-202 211-312 (351)
39 PRK06552 keto-hydroxyglutarate 99.6 2.3E-13 5.1E-18 119.9 17.0 171 10-201 12-189 (213)
40 PLN02493 probable peroxisomal 99.5 4.6E-13 1E-17 126.3 19.1 111 104-216 217-329 (367)
41 PLN02979 glycolate oxidase 99.5 6.4E-13 1.4E-17 124.4 19.3 112 103-216 215-328 (366)
42 PRK09140 2-dehydro-3-deoxy-6-p 99.5 5.2E-13 1.1E-17 117.3 17.6 180 1-201 1-185 (206)
43 cd00405 PRAI Phosphoribosylant 99.5 6.5E-13 1.4E-17 116.8 18.1 170 21-201 5-187 (203)
44 TIGR00736 nifR3_rel_arch TIM-b 99.5 1.1E-12 2.4E-17 116.6 18.9 173 18-200 1-225 (231)
45 PRK10550 tRNA-dihydrouridine s 99.5 4.6E-13 1E-17 124.9 16.0 186 12-203 2-232 (312)
46 cd04729 NanE N-acetylmannosami 99.5 2.8E-12 6.1E-17 114.1 19.6 123 77-203 82-214 (219)
47 cd03332 LMO_FMN L-Lactate 2-mo 99.5 2.1E-12 4.6E-17 122.8 19.8 97 102-201 244-343 (383)
48 PRK11197 lldD L-lactate dehydr 99.5 2E-12 4.3E-17 122.7 18.6 110 103-215 237-349 (381)
49 TIGR01182 eda Entner-Doudoroff 99.5 1.6E-12 3.6E-17 113.3 16.6 171 10-200 7-181 (204)
50 TIGR01037 pyrD_sub1_fam dihydr 99.5 4.3E-12 9.3E-17 118.3 20.2 199 8-215 9-281 (300)
51 cd04727 pdxS PdxS is a subunit 99.5 3.9E-12 8.5E-17 114.3 18.0 187 21-216 14-247 (283)
52 cd02810 DHOD_DHPD_FMN Dihydroo 99.5 4.2E-12 9.2E-17 117.6 18.9 191 8-201 7-278 (289)
53 PRK07455 keto-hydroxyglutarate 99.5 4.2E-12 9.1E-17 110.1 17.4 162 22-200 20-185 (187)
54 PRK07114 keto-hydroxyglutarate 99.5 2.1E-12 4.5E-17 114.1 15.6 175 5-201 10-194 (222)
55 PRK00043 thiE thiamine-phospha 99.5 4E-12 8.6E-17 112.3 17.3 168 26-202 25-195 (212)
56 cd00564 TMP_TenI Thiamine mono 99.5 5.7E-12 1.2E-16 109.4 17.7 166 26-201 16-184 (196)
57 COG0352 ThiE Thiamine monophos 99.4 5.2E-12 1.1E-16 110.6 16.9 160 35-203 33-194 (211)
58 PRK07107 inosine 5-monophospha 99.4 3.5E-12 7.6E-17 125.8 17.7 129 78-207 245-393 (502)
59 COG0135 TrpF Phosphoribosylant 99.4 6.2E-12 1.3E-16 109.6 17.1 169 21-202 8-190 (208)
60 PF01070 FMN_dh: FMN-dependent 99.4 5.7E-12 1.2E-16 119.5 17.6 189 5-203 51-317 (356)
61 PF01081 Aldolase: KDPG and KH 99.4 2.6E-12 5.6E-17 111.4 13.2 163 22-201 16-182 (196)
62 PRK07565 dihydroorotate dehydr 99.4 1.3E-11 2.8E-16 116.7 19.0 151 48-201 86-274 (334)
63 PRK06015 keto-hydroxyglutarate 99.4 1.2E-11 2.6E-16 107.6 17.1 161 22-199 12-176 (201)
64 TIGR00742 yjbN tRNA dihydrouri 99.4 1E-11 2.2E-16 116.1 17.3 187 12-203 2-231 (318)
65 TIGR00343 pyridoxal 5'-phospha 99.4 1.6E-11 3.5E-16 110.4 17.7 173 21-202 16-235 (287)
66 cd00452 KDPG_aldolase KDPG and 99.4 2.1E-11 4.6E-16 106.1 17.6 148 34-199 27-175 (190)
67 COG3010 NanE Putative N-acetyl 99.4 4E-11 8.7E-16 102.2 18.2 172 26-214 37-226 (229)
68 PRK07259 dihydroorotate dehydr 99.4 4.3E-11 9.2E-16 111.6 19.7 187 9-201 11-269 (301)
69 cd00331 IGPS Indole-3-glycerol 99.4 5.6E-11 1.2E-15 105.6 19.5 168 24-202 33-208 (217)
70 PRK05718 keto-hydroxyglutarate 99.4 2E-11 4.4E-16 107.4 15.7 176 10-206 14-193 (212)
71 PRK11815 tRNA-dihydrouridine s 99.4 1.9E-11 4.1E-16 115.3 16.6 189 10-203 10-241 (333)
72 PRK00278 trpC indole-3-glycero 99.4 4.1E-11 8.8E-16 109.2 18.0 168 25-203 73-248 (260)
73 PLN02334 ribulose-phosphate 3- 99.4 2.4E-11 5.2E-16 108.9 16.2 145 53-202 55-209 (229)
74 TIGR02708 L_lactate_ox L-lacta 99.4 7.4E-11 1.6E-15 111.6 19.7 202 5-215 73-332 (367)
75 PRK06512 thiamine-phosphate py 99.4 5.5E-11 1.2E-15 105.7 17.5 168 26-203 30-200 (221)
76 cd04739 DHOD_like Dihydroorota 99.3 5.8E-11 1.3E-15 111.7 18.1 149 50-201 86-272 (325)
77 cd04726 KGPDC_HPS 3-Keto-L-gul 99.3 7.8E-11 1.7E-15 103.3 17.5 142 53-200 42-191 (202)
78 cd02801 DUS_like_FMN Dihydrour 99.3 3.9E-11 8.4E-16 107.4 15.4 185 12-203 1-221 (231)
79 TIGR00693 thiE thiamine-phosph 99.3 1.1E-10 2.4E-15 102.0 17.3 167 26-201 17-186 (196)
80 PRK13958 N-(5'-phosphoribosyl) 99.3 1.3E-10 2.9E-15 102.2 17.6 165 21-198 7-185 (207)
81 PRK05286 dihydroorotate dehydr 99.3 6.3E-11 1.4E-15 112.3 16.4 188 9-201 58-324 (344)
82 cd04736 MDH_FMN Mandelate dehy 99.3 1.2E-10 2.7E-15 109.8 18.1 97 102-203 227-326 (361)
83 PLN02826 dihydroorotate dehydr 99.3 2.2E-10 4.8E-15 110.2 20.2 136 65-201 188-376 (409)
84 cd02940 DHPD_FMN Dihydropyrimi 99.3 2.1E-10 4.5E-15 106.8 19.5 188 9-201 11-287 (299)
85 COG0800 Eda 2-keto-3-deoxy-6-p 99.3 3.2E-11 7E-16 104.3 12.3 171 10-200 12-186 (211)
86 cd04722 TIM_phosphate_binding 99.3 6.3E-11 1.4E-15 102.3 14.3 179 14-196 2-200 (200)
87 PRK08883 ribulose-phosphate 3- 99.3 1.1E-10 2.3E-15 103.7 15.6 145 54-201 48-201 (220)
88 PRK02615 thiamine-phosphate py 99.3 1.6E-10 3.5E-15 108.7 17.2 165 27-201 162-328 (347)
89 COG0036 Rpe Pentose-5-phosphat 99.3 3.4E-10 7.4E-15 98.6 17.3 179 24-216 18-212 (220)
90 TIGR03128 RuMP_HxlA 3-hexulose 99.3 5.4E-10 1.2E-14 98.4 18.8 174 23-202 9-193 (206)
91 PF02581 TMP-TENI: Thiamine mo 99.3 1.2E-10 2.7E-15 100.4 14.5 164 24-197 14-179 (180)
92 COG0042 tRNA-dihydrouridine sy 99.3 1.5E-10 3.2E-15 108.6 15.7 192 7-203 7-236 (323)
93 TIGR01036 pyrD_sub2 dihydrooro 99.3 1.7E-10 3.7E-15 108.8 16.3 188 9-201 55-323 (335)
94 PRK01222 N-(5'-phosphoribosyl) 99.3 5.1E-10 1.1E-14 98.8 18.3 166 21-199 9-187 (210)
95 COG0167 PyrD Dihydroorotate de 99.3 4.3E-10 9.2E-15 103.8 18.0 193 5-201 5-276 (310)
96 PF01207 Dus: Dihydrouridine s 99.3 6.6E-11 1.4E-15 110.6 12.7 184 14-203 1-221 (309)
97 TIGR01163 rpe ribulose-phospha 99.2 5.4E-10 1.2E-14 98.5 17.6 177 24-202 13-200 (210)
98 cd04741 DHOD_1A_like Dihydroor 99.2 6.6E-10 1.4E-14 103.2 18.7 186 9-200 8-277 (294)
99 PRK07695 transcriptional regul 99.2 3.7E-10 8.1E-15 99.1 16.0 157 35-202 26-184 (201)
100 TIGR00262 trpA tryptophan synt 99.2 9.7E-10 2.1E-14 99.9 18.8 152 47-203 70-235 (256)
101 PRK09427 bifunctional indole-3 99.2 4.3E-10 9.4E-15 109.5 17.1 160 21-198 263-432 (454)
102 cd04738 DHOD_2_like Dihydrooro 99.2 3.2E-10 7E-15 106.8 15.8 188 9-201 48-315 (327)
103 PF00697 PRAI: N-(5'phosphorib 99.2 5.4E-11 1.2E-15 104.1 9.7 166 21-199 5-180 (197)
104 cd00429 RPE Ribulose-5-phospha 99.2 6.7E-10 1.5E-14 97.8 16.3 148 53-202 47-201 (211)
105 PLN02591 tryptophan synthase 99.2 9.5E-10 2E-14 99.2 17.0 153 47-203 62-226 (250)
106 TIGR00259 thylakoid_BtpA membr 99.2 1.3E-09 2.9E-14 98.1 17.8 139 51-199 67-231 (257)
107 PRK03512 thiamine-phosphate py 99.2 1E-09 2.2E-14 97.0 16.9 168 26-202 23-193 (211)
108 KOG0538 Glycolate oxidase [Ene 99.2 1.7E-10 3.6E-15 103.8 11.6 111 103-216 215-328 (363)
109 PLN02363 phosphoribosylanthran 99.2 1.1E-09 2.4E-14 99.1 17.1 167 21-198 53-231 (256)
110 PRK08005 epimerase; Validated 99.2 1.1E-09 2.4E-14 96.1 16.2 141 54-200 49-196 (210)
111 PRK08745 ribulose-phosphate 3- 99.2 1.2E-09 2.7E-14 96.9 16.5 144 54-201 52-205 (223)
112 CHL00200 trpA tryptophan synth 99.2 1.9E-09 4.2E-14 98.0 17.3 152 48-203 76-239 (263)
113 PRK04180 pyridoxal biosynthesi 99.2 1E-09 2.3E-14 99.1 14.9 173 21-202 23-241 (293)
114 PRK12290 thiE thiamine-phospha 99.1 1.5E-09 3.2E-14 103.9 16.2 170 26-202 221-399 (437)
115 PRK09722 allulose-6-phosphate 99.1 2.1E-09 4.5E-14 95.6 16.1 144 54-201 50-203 (229)
116 PRK13111 trpA tryptophan synth 99.1 2.8E-09 6.1E-14 96.8 17.2 152 48-204 73-237 (258)
117 PRK05581 ribulose-phosphate 3- 99.1 3.2E-09 7E-14 94.3 16.4 150 52-203 50-206 (220)
118 PF00218 IGPS: Indole-3-glycer 99.1 2.6E-09 5.7E-14 96.3 15.9 170 25-203 71-246 (254)
119 PLN02495 oxidoreductase, actin 99.1 8.9E-09 1.9E-13 98.3 19.7 154 48-201 97-305 (385)
120 PF03437 BtpA: BtpA family; I 99.1 1.2E-08 2.6E-13 91.9 19.3 154 51-215 68-249 (254)
121 PRK08999 hypothetical protein; 99.1 2.8E-09 6.1E-14 99.9 15.3 161 28-199 150-312 (312)
122 PRK08318 dihydropyrimidine deh 99.1 4.2E-09 9.1E-14 102.7 16.6 137 63-200 99-287 (420)
123 TIGR00007 phosphoribosylformim 99.1 8.3E-09 1.8E-13 92.4 16.2 143 53-202 62-225 (230)
124 PRK13125 trpA tryptophan synth 99.1 5.1E-09 1.1E-13 94.7 14.8 144 53-201 64-220 (244)
125 PRK13957 indole-3-glycerol-pho 99.0 1.1E-08 2.4E-13 91.7 16.5 167 25-203 64-238 (247)
126 cd04724 Tryptophan_synthase_al 99.0 6E-09 1.3E-13 94.1 14.4 149 50-205 63-225 (242)
127 COG1304 idi Isopentenyl diphos 99.0 3.6E-09 7.8E-14 100.0 13.2 98 114-214 223-321 (360)
128 PLN02898 HMP-P kinase/thiamin- 99.0 1.1E-08 2.4E-13 102.0 17.0 167 26-202 311-482 (502)
129 COG0134 TrpC Indole-3-glycerol 99.0 4.8E-09 1E-13 93.7 12.5 168 25-203 69-244 (254)
130 PRK02506 dihydroorotate dehydr 99.0 3E-08 6.5E-13 92.8 18.5 189 8-200 10-275 (310)
131 COG0159 TrpA Tryptophan syntha 99.0 2.7E-08 5.8E-13 89.5 17.0 157 46-207 76-245 (265)
132 PRK14057 epimerase; Provisiona 99.0 1.7E-08 3.7E-13 90.6 15.6 140 55-200 69-226 (254)
133 COG0434 SgcQ Predicted TIM-bar 99.0 2.2E-08 4.8E-13 87.5 15.4 161 27-199 39-236 (263)
134 PRK04302 triosephosphate isome 99.0 1.8E-08 3.9E-13 89.9 15.3 123 77-201 75-208 (223)
135 PF01645 Glu_synthase: Conserv 99.0 7.3E-10 1.6E-14 104.7 5.9 197 7-205 62-313 (368)
136 PF00834 Ribul_P_3_epim: Ribul 99.0 4.2E-09 9.1E-14 92.1 10.3 145 53-201 47-200 (201)
137 PRK08091 ribulose-phosphate 3- 99.0 3.5E-08 7.5E-13 87.6 16.1 140 55-200 62-212 (228)
138 PF01180 DHO_dh: Dihydroorotat 99.0 6.4E-09 1.4E-13 96.7 11.6 188 9-201 11-279 (295)
139 cd04732 HisA HisA. Phosphorib 98.9 4.3E-08 9.4E-13 87.9 16.5 171 25-202 32-226 (234)
140 cd04728 ThiG Thiazole synthase 98.9 7.9E-09 1.7E-13 91.4 11.2 112 100-216 110-226 (248)
141 PF00290 Trp_syntA: Tryptophan 98.9 1.6E-08 3.6E-13 91.5 13.2 153 47-204 70-235 (259)
142 PRK13585 1-(5-phosphoribosyl)- 98.9 4.1E-08 8.8E-13 88.6 15.6 171 25-203 35-230 (241)
143 PRK00208 thiG thiazole synthas 98.9 1.2E-08 2.6E-13 90.4 11.2 112 100-216 110-226 (250)
144 PLN02460 indole-3-glycerol-pho 98.9 7.3E-08 1.6E-12 89.7 16.5 172 26-203 143-325 (338)
145 PRK07028 bifunctional hexulose 98.9 1.3E-07 2.8E-12 92.5 19.2 178 12-202 4-197 (430)
146 PTZ00170 D-ribulose-5-phosphat 98.9 5.7E-08 1.2E-12 86.9 14.4 144 53-201 54-207 (228)
147 PRK13802 bifunctional indole-3 98.9 6.6E-08 1.4E-12 98.6 16.5 167 26-203 74-248 (695)
148 TIGR03572 WbuZ glycosyl amidat 98.9 1.4E-07 3E-12 84.7 16.1 139 53-198 64-230 (232)
149 PRK13307 bifunctional formalde 98.8 1.7E-07 3.7E-12 89.6 17.4 183 10-202 171-365 (391)
150 PRK13803 bifunctional phosphor 98.8 2.4E-07 5.1E-12 94.2 19.3 185 21-216 9-211 (610)
151 PRK00748 1-(5-phosphoribosyl)- 98.8 1.6E-07 3.5E-12 84.2 15.6 144 52-202 63-227 (233)
152 KOG3111 D-ribulose-5-phosphate 98.8 1.7E-07 3.6E-12 79.4 14.3 143 54-203 53-205 (224)
153 KOG2335 tRNA-dihydrouridine sy 98.8 1.2E-07 2.7E-12 87.8 14.8 180 14-201 22-239 (358)
154 cd04731 HisF The cyclase subun 98.8 2E-07 4.4E-12 84.2 15.9 171 24-202 29-230 (243)
155 PRK09517 multifunctional thiam 98.8 2E-07 4.4E-12 97.0 17.1 169 26-202 23-201 (755)
156 PRK01033 imidazole glycerol ph 98.8 3.8E-07 8.2E-12 83.2 15.9 142 53-201 64-232 (258)
157 TIGR00735 hisF imidazoleglycer 98.7 3.7E-07 7.9E-12 83.1 15.6 172 23-202 30-236 (254)
158 PRK14024 phosphoribosyl isomer 98.7 7.3E-07 1.6E-11 80.5 17.3 170 26-202 36-229 (241)
159 PRK02083 imidazole glycerol ph 98.7 5.9E-07 1.3E-11 81.7 15.9 171 23-201 30-233 (253)
160 TIGR01859 fruc_bis_ald_ fructo 98.7 2.5E-06 5.4E-11 78.6 18.5 176 21-201 22-236 (282)
161 PRK09427 bifunctional indole-3 98.7 2.6E-07 5.7E-12 90.2 12.5 141 55-203 102-246 (454)
162 PF05690 ThiG: Thiazole biosyn 98.6 3.6E-07 7.8E-12 80.2 10.6 108 104-216 117-226 (247)
163 COG0214 SNZ1 Pyridoxine biosyn 98.6 7.8E-07 1.7E-11 77.5 12.2 185 21-217 26-256 (296)
164 cd00958 DhnA Class I fructose- 98.6 2.5E-06 5.4E-11 76.6 15.9 175 8-203 5-222 (235)
165 PRK06806 fructose-bisphosphate 98.6 5.9E-06 1.3E-10 76.0 18.5 174 22-200 25-235 (281)
166 PRK13587 1-(5-phosphoribosyl)- 98.6 3.2E-06 6.9E-11 75.9 15.9 170 24-200 32-226 (234)
167 PF04481 DUF561: Protein of un 98.6 3E-06 6.5E-11 73.3 14.6 171 12-199 16-218 (242)
168 CHL00162 thiG thiamin biosynth 98.5 9.4E-07 2E-11 78.4 11.4 95 104-203 131-226 (267)
169 COG0106 HisA Phosphoribosylfor 98.5 7.9E-06 1.7E-10 72.5 16.4 142 53-201 65-227 (241)
170 cd02803 OYE_like_FMN_family Ol 98.5 4.9E-06 1.1E-10 78.4 16.2 121 80-203 147-319 (327)
171 COG0069 GltB Glutamate synthas 98.5 4.4E-07 9.6E-12 87.9 8.0 198 6-205 162-413 (485)
172 COG0269 SgbH 3-hexulose-6-phos 98.4 2.8E-05 6E-10 67.7 17.9 197 11-215 3-213 (217)
173 PRK04169 geranylgeranylglycery 98.4 2E-05 4.3E-10 70.3 16.7 175 11-203 10-221 (232)
174 PRK14114 1-(5-phosphoribosyl)- 98.4 1.4E-05 3.1E-10 72.0 15.9 142 52-201 63-229 (241)
175 PRK11840 bifunctional sulfur c 98.4 4.1E-06 9E-11 77.4 11.6 111 100-215 184-299 (326)
176 cd04723 HisA_HisF Phosphoribos 98.4 3.8E-05 8.2E-10 69.0 17.6 171 23-202 35-225 (233)
177 KOG1606 Stationary phase-induc 98.3 7.2E-06 1.6E-10 70.5 11.6 185 21-217 27-257 (296)
178 TIGR01949 AroFGH_arch predicte 98.3 3E-05 6.4E-10 70.8 16.5 173 9-202 23-234 (258)
179 PF00977 His_biosynth: Histidi 98.3 6.5E-06 1.4E-10 73.7 11.4 142 51-199 61-224 (229)
180 TIGR01769 GGGP geranylgeranylg 98.3 7.2E-05 1.6E-09 65.6 17.4 154 27-195 16-205 (205)
181 cd01572 QPRTase Quinolinate ph 98.3 1E-05 2.2E-10 74.1 11.4 87 102-201 171-260 (268)
182 PRK07226 fructose-bisphosphate 98.2 8.2E-05 1.8E-09 68.2 16.9 174 9-203 26-239 (267)
183 KOG4202 Phosphoribosylanthrani 98.2 6.5E-06 1.4E-10 68.9 8.5 124 64-199 92-220 (227)
184 PRK07428 nicotinate-nucleotide 98.2 1.1E-05 2.3E-10 74.4 10.4 91 100-202 183-278 (288)
185 TIGR01919 hisA-trpF 1-(5-phosp 98.2 7.7E-05 1.7E-09 67.4 15.6 142 53-201 64-231 (243)
186 TIGR00078 nadC nicotinate-nucl 98.2 1.7E-05 3.6E-10 72.5 11.2 85 102-199 167-254 (265)
187 TIGR00735 hisF imidazoleglycer 98.2 7.4E-06 1.6E-10 74.6 8.8 78 121-203 34-111 (254)
188 cd01568 QPRTase_NadC Quinolina 98.2 9.4E-06 2E-10 74.4 9.5 89 101-201 169-261 (269)
189 TIGR01768 GGGP-family geranylg 98.2 0.00017 3.7E-09 63.9 17.0 163 24-201 16-214 (223)
190 COG2022 ThiG Uncharacterized e 98.2 1.4E-05 3E-10 69.8 9.9 96 104-204 124-220 (262)
191 cd04731 HisF The cyclase subun 98.2 8.7E-06 1.9E-10 73.5 8.8 78 120-202 30-107 (243)
192 PRK06801 hypothetical protein; 98.2 0.00021 4.5E-09 65.9 17.9 175 21-201 24-239 (286)
193 PRK05848 nicotinate-nucleotide 98.1 1.4E-05 3E-10 73.1 9.8 91 100-202 169-264 (273)
194 PRK08072 nicotinate-nucleotide 98.1 2.6E-05 5.5E-10 71.6 10.9 86 101-199 176-264 (277)
195 PRK07315 fructose-bisphosphate 98.1 0.00036 7.8E-09 64.7 18.4 175 21-200 24-237 (293)
196 PRK05742 nicotinate-nucleotide 98.1 3E-05 6.4E-10 71.1 10.9 85 103-200 180-266 (277)
197 PRK11750 gltB glutamate syntha 98.1 5.6E-06 1.2E-10 89.4 6.6 104 101-205 985-1106(1485)
198 KOG4175 Tryptophan synthase al 98.1 0.00027 5.8E-09 60.6 15.0 184 11-199 21-239 (268)
199 PRK04128 1-(5-phosphoribosyl)- 98.0 0.00018 3.8E-09 64.4 14.7 136 53-201 63-217 (228)
200 cd01573 modD_like ModD; Quinol 98.0 3.3E-05 7.1E-10 70.9 10.1 88 101-198 172-261 (272)
201 PRK13306 ulaD 3-keto-L-gulonat 98.0 0.00023 5E-09 63.2 15.1 182 14-203 6-199 (216)
202 PRK13523 NADPH dehydrogenase N 98.0 0.00015 3.3E-09 68.6 14.5 120 81-203 149-313 (337)
203 PRK02083 imidazole glycerol ph 98.0 2.5E-05 5.4E-10 71.0 8.7 79 120-203 33-111 (253)
204 cd02932 OYE_YqiM_FMN Old yello 98.0 0.00014 3.1E-09 68.9 13.2 117 81-203 161-328 (336)
205 COG0107 HisF Imidazoleglycerol 98.0 0.00024 5.1E-09 62.3 13.1 183 25-216 33-248 (256)
206 PLN02446 (5-phosphoribosyl)-5- 97.9 0.00055 1.2E-08 62.1 16.0 163 25-198 46-241 (262)
207 PRK13586 1-(5-phosphoribosyl)- 97.9 0.00054 1.2E-08 61.4 15.6 139 53-199 63-222 (232)
208 cd02931 ER_like_FMN Enoate red 97.9 0.0006 1.3E-08 65.8 16.5 77 124-203 259-343 (382)
209 PF09370 TIM-br_sig_trns: TIM- 97.9 0.00016 3.5E-09 65.0 11.5 189 5-198 9-249 (268)
210 TIGR00734 hisAF_rel hisA/hisF 97.9 6.1E-05 1.3E-09 67.1 8.7 69 126-200 150-218 (221)
211 TIGR01304 IMP_DH_rel_2 IMP deh 97.9 0.00014 3E-09 69.4 11.3 93 101-198 123-219 (369)
212 cd04733 OYE_like_2_FMN Old yel 97.8 0.00042 9E-09 65.8 14.0 120 81-203 156-330 (338)
213 PRK08649 inosine 5-monophospha 97.8 0.00013 2.8E-09 69.7 10.4 92 101-197 122-217 (368)
214 PLN02617 imidazole glycerol ph 97.8 0.00089 1.9E-08 67.1 16.5 188 22-216 266-531 (538)
215 PF01729 QRPTase_C: Quinolinat 97.8 0.00014 3E-09 61.9 9.3 90 99-201 66-161 (169)
216 cd04735 OYE_like_4_FMN Old yel 97.8 0.00032 6.9E-09 66.9 12.8 79 124-203 242-321 (353)
217 cd02933 OYE_like_FMN Old yello 97.8 0.00043 9.3E-09 65.7 13.3 117 81-203 159-322 (338)
218 PRK00748 1-(5-phosphoribosyl)- 97.8 9.9E-05 2.1E-09 66.1 8.6 76 121-203 34-111 (233)
219 cd04734 OYE_like_3_FMN Old yel 97.8 0.00097 2.1E-08 63.4 15.7 77 124-203 235-323 (343)
220 cd04732 HisA HisA. Phosphorib 97.8 0.0001 2.3E-09 65.9 8.6 89 120-218 32-120 (234)
221 PRK13813 orotidine 5'-phosphat 97.8 0.00062 1.4E-08 60.2 13.3 136 53-202 45-199 (215)
222 PRK08385 nicotinate-nucleotide 97.7 0.00021 4.6E-09 65.5 10.1 89 101-201 171-265 (278)
223 PRK14024 phosphoribosyl isomer 97.7 0.00013 2.9E-09 65.8 8.4 77 120-203 35-112 (241)
224 cd00945 Aldolase_Class_I Class 97.7 0.0011 2.3E-08 57.4 13.5 158 26-195 17-201 (201)
225 TIGR01334 modD putative molybd 97.7 0.00027 5.9E-09 64.7 9.9 87 100-198 176-266 (277)
226 PRK06559 nicotinate-nucleotide 97.7 0.00056 1.2E-08 62.9 11.7 90 100-202 184-276 (290)
227 PRK04128 1-(5-phosphoribosyl)- 97.7 0.00016 3.5E-09 64.7 7.9 75 119-199 31-106 (228)
228 TIGR03572 WbuZ glycosyl amidat 97.7 0.00023 5E-09 63.8 8.8 78 121-203 34-111 (232)
229 PRK07896 nicotinate-nucleotide 97.7 0.00039 8.5E-09 64.0 10.4 90 100-201 187-280 (289)
230 KOG1436 Dihydroorotate dehydro 97.6 8.9E-05 1.9E-09 67.7 5.6 89 126-216 275-380 (398)
231 cd02812 PcrB_like PcrB_like pr 97.6 0.00018 4E-09 63.6 7.5 69 124-201 142-210 (219)
232 PRK06106 nicotinate-nucleotide 97.6 0.00079 1.7E-08 61.8 11.6 87 100-199 181-270 (281)
233 PRK08185 hypothetical protein; 97.6 0.0088 1.9E-07 55.1 18.3 173 22-201 20-234 (283)
234 PRK13585 1-(5-phosphoribosyl)- 97.6 0.00025 5.5E-09 63.8 8.2 78 120-202 35-112 (241)
235 PLN02716 nicotinate-nucleotide 97.6 0.0009 2E-08 62.0 11.8 96 100-199 187-294 (308)
236 PRK06978 nicotinate-nucleotide 97.6 0.0008 1.7E-08 61.9 10.8 87 100-199 193-281 (294)
237 KOG4201 Anthranilate synthase 97.5 0.00056 1.2E-08 59.2 8.7 116 81-203 153-274 (289)
238 PRK06096 molybdenum transport 97.5 0.00061 1.3E-08 62.7 9.6 85 101-197 178-266 (284)
239 PRK01033 imidazole glycerol ph 97.5 0.00047 1E-08 62.9 8.7 88 120-217 33-120 (258)
240 PRK13587 1-(5-phosphoribosyl)- 97.5 0.00045 9.8E-09 62.0 8.1 89 118-218 31-123 (234)
241 PRK06543 nicotinate-nucleotide 97.5 0.00077 1.7E-08 61.8 9.6 87 100-199 180-269 (281)
242 COG1830 FbaB DhnA-type fructos 97.5 0.0074 1.6E-07 54.4 15.6 175 9-203 29-245 (265)
243 PRK09016 quinolinate phosphori 97.5 0.00071 1.5E-08 62.4 9.4 86 100-198 196-283 (296)
244 PRK08255 salicylyl-CoA 5-hydro 97.5 0.0023 5E-08 67.3 14.3 120 81-203 558-725 (765)
245 TIGR02129 hisA_euk phosphoribo 97.4 0.0097 2.1E-07 53.8 15.9 162 25-200 41-237 (253)
246 COG0107 HisF Imidazoleglycerol 97.4 0.00066 1.4E-08 59.6 7.8 79 120-203 33-111 (256)
247 TIGR01182 eda Entner-Doudoroff 97.4 0.0034 7.3E-08 55.1 12.2 100 78-194 24-127 (204)
248 TIGR00007 phosphoribosylformim 97.4 0.0007 1.5E-08 60.5 8.2 87 120-218 31-119 (230)
249 cd02930 DCR_FMN 2,4-dienoyl-Co 97.4 0.0018 3.8E-08 61.9 11.3 77 124-203 231-314 (353)
250 PRK07998 gatY putative fructos 97.3 0.018 3.8E-07 53.1 16.9 150 47-201 58-235 (283)
251 PRK08227 autoinducer 2 aldolas 97.3 0.0021 4.6E-08 58.5 10.7 169 9-202 29-233 (264)
252 COG1902 NemA NADH:flavin oxido 97.3 0.016 3.4E-07 55.4 17.1 78 123-203 243-326 (363)
253 cd00959 DeoC 2-deoxyribose-5-p 97.3 0.026 5.7E-07 49.5 17.3 107 79-192 74-200 (203)
254 PRK13397 3-deoxy-7-phosphohept 97.3 0.078 1.7E-06 47.9 20.1 173 12-197 17-221 (250)
255 cd04747 OYE_like_5_FMN Old yel 97.3 0.0049 1.1E-07 58.9 13.1 116 82-203 152-336 (361)
256 COG1646 Predicted phosphate-bi 97.3 0.0045 9.8E-08 54.6 11.4 174 11-202 18-227 (240)
257 TIGR01306 GMP_reduct_2 guanosi 97.2 0.005 1.1E-07 57.6 12.1 123 63-195 34-165 (321)
258 TIGR00126 deoC deoxyribose-pho 97.2 0.04 8.7E-07 48.6 17.0 108 79-193 75-202 (211)
259 PRK06852 aldolase; Validated 97.2 0.021 4.5E-07 53.1 15.6 178 9-202 38-272 (304)
260 TIGR02129 hisA_euk phosphoribo 97.2 0.0042 9.1E-08 56.1 10.5 85 120-217 41-125 (253)
261 cd04723 HisA_HisF Phosphoribos 97.1 0.0024 5.2E-08 57.3 8.9 87 120-219 38-125 (233)
262 PF01884 PcrB: PcrB family; I 97.1 0.0016 3.6E-08 57.9 7.7 181 1-201 1-217 (230)
263 PRK00230 orotidine 5'-phosphat 97.1 0.011 2.4E-07 52.9 12.8 131 54-203 45-215 (230)
264 cd02929 TMADH_HD_FMN Trimethyl 97.0 0.014 3E-07 56.1 13.5 49 152-203 278-327 (370)
265 PRK07709 fructose-bisphosphate 97.0 0.099 2.2E-06 48.3 18.4 176 21-200 24-238 (285)
266 cd00947 TBP_aldolase_IIB Tagat 97.0 0.095 2.1E-06 48.2 18.2 176 21-200 19-231 (276)
267 TIGR01858 tag_bisphos_ald clas 97.0 0.088 1.9E-06 48.6 17.9 177 21-201 22-236 (282)
268 PRK12737 gatY tagatose-bisphos 97.0 0.091 2E-06 48.5 18.1 176 21-200 24-237 (284)
269 TIGR00167 cbbA ketose-bisphosp 97.0 0.098 2.1E-06 48.4 18.2 176 22-201 25-242 (288)
270 PRK06552 keto-hydroxyglutarate 97.0 0.02 4.3E-07 50.7 13.0 100 78-194 29-135 (213)
271 PF00977 His_biosynth: Histidi 97.0 0.0012 2.7E-08 59.1 5.2 81 118-203 29-110 (229)
272 PRK09195 gatY tagatose-bisphos 97.0 0.11 2.4E-06 47.9 18.1 177 21-201 24-238 (284)
273 COG5564 Predicted TIM-barrel e 96.9 0.015 3.2E-07 50.8 11.4 189 2-197 12-254 (276)
274 PRK00507 deoxyribose-phosphate 96.9 0.0031 6.7E-08 56.1 7.6 112 79-197 79-210 (221)
275 PRK06015 keto-hydroxyglutarate 96.9 0.02 4.2E-07 50.1 12.4 100 78-194 20-123 (201)
276 PF01791 DeoC: DeoC/LacD famil 96.9 0.0035 7.6E-08 56.3 8.1 116 78-199 80-234 (236)
277 PRK05835 fructose-bisphosphate 96.9 0.13 2.8E-06 47.9 18.2 177 21-201 23-261 (307)
278 PRK12738 kbaY tagatose-bisphos 96.9 0.14 3E-06 47.3 18.3 177 21-201 24-238 (286)
279 PRK13586 1-(5-phosphoribosyl)- 96.9 0.0044 9.4E-08 55.6 8.2 86 120-217 33-119 (232)
280 PRK08610 fructose-bisphosphate 96.9 0.15 3.3E-06 47.1 18.2 176 21-200 24-238 (286)
281 PRK14114 1-(5-phosphoribosyl)- 96.9 0.0056 1.2E-07 55.2 8.7 78 118-203 30-110 (241)
282 TIGR01919 hisA-trpF 1-(5-phosp 96.9 0.0045 9.7E-08 55.9 8.1 71 123-202 37-110 (243)
283 PF01081 Aldolase: KDPG and KH 96.9 0.032 6.9E-07 48.6 13.1 117 78-216 24-144 (196)
284 PLN02617 imidazole glycerol ph 96.8 0.0043 9.3E-08 62.3 8.3 78 121-202 271-361 (538)
285 PRK12457 2-dehydro-3-deoxyphos 96.8 0.27 5.8E-06 44.9 18.8 172 12-194 18-236 (281)
286 PF00478 IMPDH: IMP dehydrogen 96.8 0.0047 1E-07 58.5 7.9 78 110-195 96-177 (352)
287 PRK05458 guanosine 5'-monophos 96.8 0.035 7.6E-07 52.2 13.6 123 63-195 37-168 (326)
288 cd00956 Transaldolase_FSA Tran 96.8 0.076 1.6E-06 46.9 15.1 139 53-197 41-187 (211)
289 PRK06843 inosine 5-monophospha 96.7 0.0055 1.2E-07 59.1 8.1 68 120-195 155-222 (404)
290 PF04309 G3P_antiterm: Glycero 96.7 0.012 2.6E-07 50.2 9.1 129 50-197 32-171 (175)
291 PF04131 NanE: Putative N-acet 96.6 0.063 1.4E-06 46.2 12.9 107 24-136 53-172 (192)
292 TIGR01362 KDO8P_synth 3-deoxy- 96.6 0.46 9.9E-06 42.9 18.8 171 12-195 4-221 (258)
293 cd00452 KDPG_aldolase KDPG and 96.6 0.05 1.1E-06 47.2 12.5 100 78-194 20-123 (190)
294 TIGR01305 GMP_reduct_1 guanosi 96.5 0.059 1.3E-06 50.5 12.9 108 78-195 60-178 (343)
295 PLN03033 2-dehydro-3-deoxyphos 96.5 0.31 6.6E-06 44.6 17.0 169 13-194 19-239 (290)
296 PRK12857 fructose-1,6-bisphosp 96.5 0.4 8.7E-06 44.3 18.2 176 22-201 25-238 (284)
297 TIGR01361 DAHP_synth_Bsub phos 96.5 0.26 5.7E-06 45.0 16.8 138 54-201 80-235 (260)
298 PRK09250 fructose-bisphosphate 96.5 0.021 4.6E-07 53.7 9.8 123 80-202 152-325 (348)
299 PRK07114 keto-hydroxyglutarate 96.5 0.073 1.6E-06 47.3 12.7 100 78-194 31-138 (222)
300 PRK05718 keto-hydroxyglutarate 96.5 0.065 1.4E-06 47.4 12.3 117 78-216 31-151 (212)
301 cd06557 KPHMT-like Ketopantoat 96.5 0.15 3.3E-06 46.3 15.0 154 3-174 4-201 (254)
302 PLN02274 inosine-5'-monophosph 96.4 0.011 2.5E-07 58.9 8.1 190 2-202 46-326 (505)
303 PRK00042 tpiA triosephosphate 96.4 0.12 2.5E-06 46.9 14.0 120 78-200 77-237 (250)
304 PF01116 F_bP_aldolase: Fructo 96.4 0.32 6.9E-06 45.0 17.1 150 49-201 59-241 (287)
305 PTZ00314 inosine-5'-monophosph 96.4 0.0098 2.1E-07 59.3 7.3 68 120-195 243-310 (495)
306 COG0157 NadC Nicotinate-nucleo 96.3 0.024 5.3E-07 51.5 9.0 86 100-197 175-264 (280)
307 PLN02446 (5-phosphoribosyl)-5- 96.3 0.013 2.8E-07 53.2 7.1 88 119-217 45-132 (262)
308 PRK13396 3-deoxy-7-phosphohept 96.3 0.76 1.6E-05 43.7 19.2 178 8-197 97-308 (352)
309 cd00311 TIM Triosephosphate is 96.3 0.1 2.2E-06 47.1 12.9 119 79-200 76-233 (242)
310 PRK12595 bifunctional 3-deoxy- 96.3 0.44 9.6E-06 45.6 17.8 142 54-205 173-330 (360)
311 cd06556 ICL_KPHMT Members of t 96.3 0.44 9.6E-06 42.9 16.7 145 11-173 12-198 (240)
312 PRK11572 copper homeostasis pr 96.2 0.54 1.2E-05 42.4 17.0 108 79-194 78-197 (248)
313 TIGR00222 panB 3-methyl-2-oxob 96.2 0.23 5.1E-06 45.2 14.7 144 11-173 15-202 (263)
314 TIGR01302 IMP_dehydrog inosine 96.2 0.11 2.5E-06 51.2 13.7 120 13-136 214-355 (450)
315 PRK05198 2-dehydro-3-deoxyphos 96.2 0.96 2.1E-05 41.0 18.5 170 12-194 12-228 (264)
316 cd01571 NAPRTase_B Nicotinate 96.2 0.034 7.4E-07 51.9 9.3 85 111-201 185-279 (302)
317 TIGR01303 IMP_DH_rel_1 IMP deh 96.2 0.021 4.5E-07 56.6 8.3 67 121-195 228-294 (475)
318 COG0106 HisA Phosphoribosylfor 96.2 0.036 7.8E-07 49.5 9.0 89 118-219 32-123 (241)
319 PRK13398 3-deoxy-7-phosphohept 96.1 0.54 1.2E-05 43.1 16.8 176 10-199 27-235 (266)
320 cd00331 IGPS Indole-3-glycerol 96.1 0.029 6.3E-07 49.6 8.3 73 120-200 34-106 (217)
321 PRK05096 guanosine 5'-monophos 96.1 0.13 2.9E-06 48.2 12.8 108 78-195 61-179 (346)
322 COG0800 Eda 2-keto-3-deoxy-6-p 96.0 0.088 1.9E-06 46.1 10.7 117 78-216 29-149 (211)
323 cd00381 IMPDH IMPDH: The catal 96.0 0.35 7.6E-06 45.6 15.6 68 120-195 96-163 (325)
324 PRK00311 panB 3-methyl-2-oxobu 96.0 0.59 1.3E-05 42.7 16.4 150 5-173 9-203 (264)
325 cd02911 arch_FMN Archeal FMN-b 96.0 0.14 3E-06 46.0 12.2 89 46-136 123-219 (233)
326 PRK07107 inosine 5-monophospha 96.0 0.13 2.7E-06 51.5 13.0 67 121-194 245-311 (502)
327 PRK14565 triosephosphate isome 95.9 0.086 1.9E-06 47.3 10.5 118 78-199 76-222 (237)
328 PRK10605 N-ethylmaleimide redu 95.9 0.037 8.1E-07 53.0 8.6 72 124-203 256-329 (362)
329 COG2185 Sbm Methylmalonyl-CoA 95.9 0.065 1.4E-06 44.0 8.7 81 104-193 34-120 (143)
330 PRK01362 putative translaldola 95.8 0.45 9.7E-06 42.1 14.5 137 53-195 41-185 (214)
331 PRK07084 fructose-bisphosphate 95.8 0.98 2.1E-05 42.4 17.3 135 63-200 85-273 (321)
332 PTZ00333 triosephosphate isome 95.8 0.29 6.2E-06 44.5 13.5 118 78-199 80-240 (255)
333 PF03932 CutC: CutC family; I 95.8 0.47 1E-05 41.5 14.3 159 23-193 8-197 (201)
334 COG2876 AroA 3-deoxy-D-arabino 95.8 0.48 1E-05 42.8 14.4 170 12-194 47-248 (286)
335 KOG2333 Uncharacterized conser 95.8 0.23 5E-06 48.4 13.0 193 5-201 259-491 (614)
336 TIGR00640 acid_CoA_mut_C methy 95.8 0.098 2.1E-06 42.6 9.3 80 105-193 25-110 (132)
337 PRK13399 fructose-1,6-bisphosp 95.7 1.1 2.4E-05 42.5 17.2 177 21-200 24-282 (347)
338 COG0149 TpiA Triosephosphate i 95.6 0.18 3.8E-06 45.5 11.1 120 79-201 80-237 (251)
339 PRK07455 keto-hydroxyglutarate 95.6 0.59 1.3E-05 40.4 14.2 100 78-194 28-131 (187)
340 TIGR00875 fsa_talC_mipB fructo 95.6 0.6 1.3E-05 41.3 14.4 137 53-196 41-186 (213)
341 PRK09140 2-dehydro-3-deoxy-6-p 95.6 0.31 6.7E-06 42.9 12.5 100 78-194 26-130 (206)
342 PRK00278 trpC indole-3-glycero 95.5 0.44 9.6E-06 43.5 13.8 120 9-136 110-239 (260)
343 PRK07807 inosine 5-monophospha 95.5 0.055 1.2E-06 53.7 8.3 72 121-200 230-303 (479)
344 PF01645 Glu_synthase: Conserv 95.5 0.22 4.7E-06 47.7 11.9 101 36-136 172-302 (368)
345 TIGR00734 hisAF_rel hisA/hisF 95.5 0.067 1.5E-06 47.6 8.1 78 117-203 35-116 (221)
346 cd03174 DRE_TIM_metallolyase D 95.5 1.1 2.5E-05 40.4 16.3 158 26-193 23-220 (265)
347 PRK09196 fructose-1,6-bisphosp 95.3 1.6 3.5E-05 41.4 17.0 178 21-201 24-283 (347)
348 PRK14567 triosephosphate isome 95.3 0.21 4.6E-06 45.2 10.8 119 78-199 76-235 (253)
349 TIGR00419 tim triosephosphate 95.3 0.32 6.9E-06 42.7 11.6 120 78-200 72-203 (205)
350 PRK15452 putative protease; Pr 95.3 0.43 9.3E-06 47.0 13.7 111 70-195 6-141 (443)
351 PRK08673 3-deoxy-7-phosphohept 95.3 1.1 2.5E-05 42.3 16.0 137 53-198 147-300 (335)
352 PRK13957 indole-3-glycerol-pho 95.3 0.096 2.1E-06 47.3 8.3 71 120-200 64-136 (247)
353 COG0329 DapA Dihydrodipicolina 95.2 0.22 4.7E-06 46.5 10.9 121 122-247 30-154 (299)
354 PLN02429 triosephosphate isome 95.2 0.28 6E-06 45.8 11.5 119 79-199 139-296 (315)
355 TIGR03569 NeuB_NnaB N-acetylne 95.2 1.4 3.1E-05 41.5 16.3 120 66-190 88-218 (329)
356 PLN02424 ketopantoate hydroxym 95.2 0.6 1.3E-05 43.8 13.4 144 11-173 35-224 (332)
357 PRK12331 oxaloacetate decarbox 95.1 1.7 3.7E-05 42.9 17.3 112 77-195 99-229 (448)
358 PRK11572 copper homeostasis pr 95.1 0.12 2.7E-06 46.5 8.4 96 115-220 6-116 (248)
359 TIGR00736 nifR3_rel_arch TIM-b 95.1 0.54 1.2E-05 42.1 12.4 90 46-136 118-219 (231)
360 COG1954 GlpP Glycerol-3-phosph 95.0 0.4 8.7E-06 40.4 10.6 129 47-193 33-171 (181)
361 PRK12656 fructose-6-phosphate 95.0 1.2 2.6E-05 39.6 14.4 137 53-195 42-189 (222)
362 cd00408 DHDPS-like Dihydrodipi 95.0 0.29 6.4E-06 44.9 11.1 123 122-249 23-149 (281)
363 PRK05567 inosine 5'-monophosph 95.0 0.66 1.4E-05 46.3 14.1 120 14-137 219-360 (486)
364 TIGR02313 HpaI-NOT-DapA 2,4-di 94.8 0.24 5.2E-06 46.0 9.9 122 122-248 26-152 (294)
365 cd02922 FCB2_FMN Flavocytochro 94.8 0.66 1.4E-05 44.1 12.9 43 150-196 200-242 (344)
366 TIGR00262 trpA tryptophan synt 94.8 1.1 2.4E-05 40.8 13.9 120 9-136 86-226 (256)
367 PLN02623 pyruvate kinase 94.7 0.54 1.2E-05 47.5 12.7 116 78-196 282-418 (581)
368 PF13714 PEP_mutase: Phosphoen 94.7 2.1 4.6E-05 38.5 15.3 167 21-201 15-225 (238)
369 PRK04147 N-acetylneuraminate l 94.7 0.31 6.6E-06 45.2 10.3 123 122-249 29-156 (293)
370 TIGR03586 PseI pseudaminic aci 94.6 2.4 5.1E-05 40.1 16.1 120 66-190 89-217 (327)
371 TIGR02319 CPEP_Pphonmut carbox 94.6 3.8 8.3E-05 38.0 17.5 182 3-201 8-239 (294)
372 PRK07259 dihydroorotate dehydr 94.6 1 2.2E-05 41.9 13.6 90 47-136 141-262 (301)
373 PLN02591 tryptophan synthase 94.5 1.8 3.9E-05 39.3 14.5 122 9-136 77-217 (250)
374 TIGR02317 prpB methylisocitrat 94.5 3.9 8.5E-05 37.8 18.0 182 3-201 5-235 (285)
375 PF02548 Pantoate_transf: Keto 94.5 1.4 3.1E-05 40.0 13.6 138 22-173 23-204 (261)
376 cd02810 DHOD_DHPD_FMN Dihydroo 94.4 0.45 9.9E-06 43.9 10.8 90 47-136 146-271 (289)
377 TIGR00683 nanA N-acetylneurami 94.4 0.43 9.4E-06 44.2 10.6 122 122-249 26-154 (290)
378 cd00951 KDGDH 5-dehydro-4-deox 94.4 0.43 9.4E-06 44.2 10.6 78 122-201 26-107 (289)
379 TIGR02708 L_lactate_ox L-lacta 94.4 0.94 2E-05 43.4 12.9 43 150-196 215-257 (367)
380 PF03932 CutC: CutC family; I 94.4 0.34 7.4E-06 42.4 9.2 99 115-223 5-118 (201)
381 PRK11320 prpB 2-methylisocitra 94.3 4.5 9.7E-05 37.6 18.1 182 3-201 9-240 (292)
382 PRK12581 oxaloacetate decarbox 94.2 1.1 2.5E-05 44.2 13.5 122 67-195 93-238 (468)
383 cd02072 Glm_B12_BD B12 binding 94.2 0.65 1.4E-05 37.6 9.8 81 105-193 22-113 (128)
384 TIGR01037 pyrD_sub1_fam dihydr 94.2 0.63 1.4E-05 43.2 11.3 91 46-136 140-262 (300)
385 cd00952 CHBPH_aldolase Trans-o 94.2 0.46 9.9E-06 44.5 10.4 79 122-201 34-116 (309)
386 PRK14041 oxaloacetate decarbox 94.2 2.2 4.8E-05 42.3 15.5 111 78-195 99-228 (467)
387 TIGR01521 FruBisAldo_II_B fruc 94.2 5 0.00011 38.1 17.1 178 21-201 22-281 (347)
388 cd00954 NAL N-Acetylneuraminic 94.1 0.57 1.2E-05 43.4 10.8 122 122-249 26-154 (288)
389 TIGR01520 FruBisAldo_II_A fruc 94.1 5.5 0.00012 37.9 17.4 151 51-201 87-293 (357)
390 PRK12653 fructose-6-phosphate 94.1 2.4 5.2E-05 37.7 14.2 135 55-195 43-187 (220)
391 PRK14040 oxaloacetate decarbox 94.1 1.7 3.7E-05 44.4 14.9 135 53-194 65-229 (593)
392 COG0274 DeoC Deoxyribose-phosp 94.1 0.15 3.3E-06 45.0 6.5 63 125-194 148-211 (228)
393 COG5016 Pyruvate/oxaloacetate 94.1 0.46 9.9E-06 45.5 10.0 123 66-195 85-231 (472)
394 TIGR02320 PEP_mutase phosphoen 94.1 4.9 0.00011 37.2 17.6 147 46-201 61-246 (285)
395 PRK05265 pyridoxine 5'-phospha 94.0 4.3 9.4E-05 36.3 15.4 173 23-199 24-217 (239)
396 cd06557 KPHMT-like Ketopantoat 94.0 0.63 1.4E-05 42.3 10.4 88 103-194 4-110 (254)
397 PRK03170 dihydrodipicolinate s 93.9 0.63 1.4E-05 43.1 10.7 121 122-248 27-152 (292)
398 cd00003 PNPsynthase Pyridoxine 93.9 3 6.4E-05 37.2 14.1 173 23-199 21-215 (234)
399 PF13714 PEP_mutase: Phosphoen 93.9 0.56 1.2E-05 42.2 9.9 91 104-197 2-107 (238)
400 PRK09197 fructose-bisphosphate 93.9 3.9 8.5E-05 38.8 15.8 151 51-201 80-285 (350)
401 PF02679 ComA: (2R)-phospho-3- 93.8 0.23 5E-06 44.7 7.2 98 46-144 51-174 (244)
402 PRK03620 5-dehydro-4-deoxygluc 93.8 0.34 7.4E-06 45.2 8.6 78 122-201 33-114 (303)
403 cd00377 ICL_PEPM Members of th 93.7 5.1 0.00011 36.1 17.9 179 4-200 2-231 (243)
404 cd03332 LMO_FMN L-Lactate 2-mo 93.7 1.6 3.5E-05 42.0 13.2 41 151-195 241-281 (383)
405 COG3010 NanE Putative N-acetyl 93.7 2.3 5E-05 37.1 12.6 106 24-136 87-208 (229)
406 PRK10415 tRNA-dihydrouridine s 93.7 1.2 2.5E-05 42.1 12.0 91 46-136 116-223 (321)
407 PRK14042 pyruvate carboxylase 93.6 2.6 5.7E-05 43.1 15.1 121 67-194 84-228 (596)
408 cd04740 DHOD_1B_like Dihydroor 93.6 1.1 2.5E-05 41.4 11.8 91 46-136 137-259 (296)
409 PRK01130 N-acetylmannosamine-6 93.6 2.3 5E-05 37.5 13.3 108 24-136 77-201 (221)
410 cd00950 DHDPS Dihydrodipicolin 93.5 0.63 1.4E-05 42.8 9.9 122 122-249 26-152 (284)
411 TIGR03849 arch_ComA phosphosul 93.5 0.34 7.4E-06 43.4 7.7 96 47-143 39-160 (237)
412 PRK08662 nicotinate phosphorib 93.5 0.5 1.1E-05 44.9 9.3 94 101-201 188-294 (343)
413 PLN02561 triosephosphate isome 93.5 1.2 2.6E-05 40.4 11.3 120 78-199 79-237 (253)
414 cd04726 KGPDC_HPS 3-Keto-L-gul 93.5 3.6 7.9E-05 35.5 14.2 123 10-136 53-185 (202)
415 PLN02417 dihydrodipicolinate s 93.4 0.66 1.4E-05 42.8 9.8 119 122-248 27-150 (280)
416 cd04729 NanE N-acetylmannosami 93.4 2.3 4.9E-05 37.6 13.0 108 25-136 82-205 (219)
417 TIGR00559 pdxJ pyridoxine 5'-p 93.4 4.5 9.7E-05 36.2 14.4 173 23-199 21-216 (237)
418 PRK04180 pyridoxal biosynthesi 93.4 0.65 1.4E-05 42.7 9.4 80 101-193 64-146 (293)
419 PRK12655 fructose-6-phosphate 93.4 3.6 7.8E-05 36.6 13.9 136 55-196 43-188 (220)
420 cd04725 OMP_decarboxylase_like 93.3 3 6.4E-05 36.9 13.3 133 52-203 39-208 (216)
421 PRK12858 tagatose 1,6-diphosph 93.3 1.2 2.5E-05 42.3 11.3 117 80-200 112-281 (340)
422 PF00724 Oxidored_FMN: NADH:fl 93.3 0.11 2.3E-06 49.4 4.4 48 153-203 281-329 (341)
423 cd02940 DHPD_FMN Dihydropyrimi 93.2 1.1 2.4E-05 41.7 11.1 91 46-136 151-280 (299)
424 PRK00208 thiG thiazole synthas 93.2 2.4 5.3E-05 38.1 12.5 123 10-136 62-203 (250)
425 PRK07188 nicotinate phosphorib 93.2 0.51 1.1E-05 44.9 8.8 82 119-202 215-317 (352)
426 PRK12330 oxaloacetate decarbox 93.2 4.8 0.0001 40.2 15.9 113 77-194 100-231 (499)
427 TIGR01163 rpe ribulose-phospha 93.2 4.9 0.00011 34.8 14.6 112 78-200 15-138 (210)
428 PRK13305 sgbH 3-keto-L-gulonat 93.1 0.7 1.5E-05 41.0 9.1 169 22-203 12-199 (218)
429 PRK05692 hydroxymethylglutaryl 93.1 3.9 8.5E-05 37.8 14.4 158 25-193 29-229 (287)
430 COG0042 tRNA-dihydrouridine sy 93.1 1.4 3.1E-05 41.5 11.6 91 46-136 118-227 (323)
431 KOG2335 tRNA-dihydrouridine sy 93.0 2.3 4.9E-05 40.2 12.6 102 32-136 113-232 (358)
432 TIGR00674 dapA dihydrodipicoli 93.0 0.92 2E-05 41.9 10.1 121 122-248 24-149 (285)
433 PF03102 NeuB: NeuB family; I 93.0 0.73 1.6E-05 41.5 9.1 74 101-186 60-133 (241)
434 PLN02493 probable peroxisomal 93.0 2.2 4.7E-05 40.9 12.7 43 150-196 211-253 (367)
435 cd04728 ThiG Thiazole synthase 93.0 1.6 3.5E-05 39.2 11.0 118 17-136 67-203 (248)
436 PLN02979 glycolate oxidase 92.9 2.7 5.8E-05 40.2 13.1 44 150-197 210-253 (366)
437 COG3142 CutC Uncharacterized p 92.9 2.8 6.2E-05 37.2 12.2 116 67-189 62-194 (241)
438 COG1411 Uncharacterized protei 92.9 0.34 7.4E-06 41.9 6.4 64 130-199 151-214 (229)
439 COG2513 PrpB PEP phosphonomuta 92.8 0.72 1.6E-05 42.3 8.8 96 101-199 8-117 (289)
440 PRK13111 trpA tryptophan synth 92.8 4.4 9.5E-05 36.9 14.0 121 9-136 88-227 (258)
441 PRK09282 pyruvate carboxylase 92.8 4.6 0.0001 41.3 15.5 112 77-195 99-229 (592)
442 PRK12376 putative translaldola 92.7 7.3 0.00016 35.0 15.5 136 53-195 47-199 (236)
443 TIGR03128 RuMP_HxlA 3-hexulose 92.7 3.1 6.8E-05 36.1 12.6 104 85-198 22-136 (206)
444 PLN02411 12-oxophytodienoate r 92.7 0.18 4E-06 48.8 5.1 46 154-203 304-350 (391)
445 cd02071 MM_CoA_mut_B12_BD meth 92.6 1.4 3E-05 35.1 9.5 80 105-193 22-107 (122)
446 PRK05437 isopentenyl pyrophosp 92.6 2.8 6.2E-05 40.0 13.0 89 48-136 171-289 (352)
447 PRK15492 triosephosphate isome 92.5 1.1 2.4E-05 40.9 9.7 120 78-199 85-245 (260)
448 PF00072 Response_reg: Respons 92.5 3.1 6.7E-05 31.5 11.1 83 104-194 16-99 (112)
449 TIGR03239 GarL 2-dehydro-3-deo 92.4 8.1 0.00018 35.0 15.9 185 3-197 3-232 (249)
450 PF01207 Dus: Dihydrouridine s 92.4 1 2.3E-05 42.1 9.7 91 46-136 105-212 (309)
451 TIGR02151 IPP_isom_2 isopenten 92.4 2.3 5E-05 40.2 12.1 90 47-136 163-282 (333)
452 TIGR00737 nifR3_yhdG putative 92.3 2.1 4.5E-05 40.2 11.7 90 47-136 115-221 (319)
453 PF03102 NeuB: NeuB family; I 92.2 5.7 0.00012 35.8 13.8 135 46-191 53-197 (241)
454 cd04738 DHOD_2_like Dihydrooro 92.2 1.1 2.3E-05 42.4 9.5 91 46-136 180-308 (327)
455 TIGR02317 prpB methylisocitrat 92.2 1.5 3.2E-05 40.6 10.2 92 103-197 5-110 (285)
456 PRK11320 prpB 2-methylisocitra 92.2 1.1 2.4E-05 41.5 9.4 92 102-196 8-114 (292)
457 TIGR01501 MthylAspMutase methy 92.1 1.6 3.5E-05 35.6 9.2 84 104-195 23-117 (134)
458 CHL00200 trpA tryptophan synth 92.0 4.5 9.8E-05 36.9 13.1 122 9-136 90-230 (263)
459 TIGR03249 KdgD 5-dehydro-4-deo 91.9 0.9 2E-05 42.2 8.7 78 122-201 31-112 (296)
460 PLN02858 fructose-bisphosphate 91.9 11 0.00023 42.7 18.2 123 77-199 1182-1335(1378)
461 cd00516 PRTase_typeII Phosphor 91.8 1.2 2.7E-05 40.8 9.4 83 113-201 187-273 (281)
462 cd08556 GDPD Glycerophosphodie 91.8 2.1 4.5E-05 36.2 10.3 55 82-136 132-187 (189)
463 cd08562 GDPD_EcUgpQ_like Glyce 91.8 1.7 3.7E-05 38.4 10.0 59 79-137 168-227 (229)
464 PRK00311 panB 3-methyl-2-oxobu 91.7 1.9 4.1E-05 39.4 10.2 88 103-194 7-113 (264)
465 cd02809 alpha_hydroxyacid_oxid 91.6 2.2 4.8E-05 39.7 10.8 81 53-136 162-255 (299)
466 TIGR01859 fruc_bis_ald_ fructo 91.6 9.5 0.00021 35.2 14.8 109 106-219 69-200 (282)
467 cd02808 GltS_FMN Glutamate syn 91.5 2.9 6.2E-05 40.6 11.9 91 45-136 195-313 (392)
468 TIGR00742 yjbN tRNA dihydrouri 91.5 3.2 7E-05 39.0 11.9 90 46-136 106-222 (318)
469 cd00956 Transaldolase_FSA Tran 91.4 6.5 0.00014 34.7 13.1 60 77-136 112-184 (211)
470 PRK09454 ugpQ cytoplasmic glyc 91.4 1.9 4.1E-05 38.9 10.0 57 83-139 182-239 (249)
471 cd00945 Aldolase_Class_I Class 91.4 2 4.3E-05 36.6 9.8 113 78-198 17-152 (201)
472 cd07938 DRE_TIM_HMGL 3-hydroxy 91.3 7.3 0.00016 35.8 13.8 113 75-193 74-223 (274)
473 PF00218 IGPS: Indole-3-glycer 91.2 1.6 3.6E-05 39.6 9.3 71 121-201 72-144 (254)
474 cd00377 ICL_PEPM Members of th 91.2 1.5 3.3E-05 39.6 9.0 83 109-194 8-103 (243)
475 cd07944 DRE_TIM_HOA_like 4-hyd 91.2 12 0.00025 34.2 16.3 111 77-192 85-212 (266)
476 COG0157 NadC Nicotinate-nucleo 91.2 2.1 4.6E-05 39.1 9.8 83 51-136 174-261 (280)
477 PRK10550 tRNA-dihydrouridine s 91.2 3.9 8.4E-05 38.4 12.0 91 46-136 114-223 (312)
478 cd04739 DHOD_like Dihydroorota 91.1 3.1 6.8E-05 39.2 11.5 88 49-136 149-265 (325)
479 cd06556 ICL_KPHMT Members of t 91.1 1.8 4E-05 39.0 9.4 83 110-194 12-108 (240)
480 PF04476 DUF556: Protein of un 91.1 8.9 0.00019 34.2 13.4 124 70-197 3-153 (235)
481 cd08563 GDPD_TtGDE_like Glycer 91.0 1.8 4E-05 38.4 9.4 57 81-137 171-228 (230)
482 cd02801 DUS_like_FMN Dihydrour 91.0 4.7 0.0001 35.6 12.0 90 47-136 107-212 (231)
483 cd03174 DRE_TIM_metallolyase D 91.0 8 0.00017 34.8 13.7 134 79-216 24-183 (265)
484 COG0191 Fba Fructose/tagatose 90.9 13 0.00028 34.3 17.9 147 49-200 61-239 (286)
485 TIGR00343 pyridoxal 5'-phospha 90.9 1 2.2E-05 41.3 7.4 76 113-193 13-94 (287)
486 PF00701 DHDPS: Dihydrodipicol 90.7 0.9 2E-05 41.9 7.3 79 122-201 27-109 (289)
487 PRK02227 hypothetical protein; 90.7 1.4 3.1E-05 39.4 8.1 82 112-197 2-89 (238)
488 COG0352 ThiE Thiamine monophos 90.7 4.4 9.5E-05 35.8 11.2 107 77-202 24-138 (211)
489 cd00946 FBP_aldolase_IIA Class 90.7 16 0.00034 34.8 16.0 151 51-201 75-281 (345)
490 KOG0623 Glutamine amidotransfe 90.6 0.66 1.4E-05 43.3 6.1 90 120-216 444-534 (541)
491 TIGR03569 NeuB_NnaB N-acetylne 90.6 2.3 5E-05 40.2 9.9 74 101-186 80-153 (329)
492 PRK04302 triosephosphate isome 90.6 11 0.00023 33.4 13.8 111 21-136 70-201 (223)
493 PF03740 PdxJ: Pyridoxal phosp 90.6 2.4 5.2E-05 38.0 9.4 173 23-199 22-218 (239)
494 cd08564 GDPD_GsGDE_like Glycer 90.5 2.3 5E-05 38.7 9.7 59 79-137 192-255 (265)
495 TIGR03217 4OH_2_O_val_ald 4-hy 90.5 16 0.00034 34.6 17.3 113 76-193 89-218 (333)
496 PRK05283 deoxyribose-phosphate 90.5 0.71 1.5E-05 41.9 6.1 108 80-190 89-219 (257)
497 PRK14905 triosephosphate isome 90.5 2.8 6E-05 40.1 10.4 120 78-199 86-246 (355)
498 COG0826 Collagenase and relate 90.5 10 0.00022 36.1 14.3 112 70-194 9-143 (347)
499 PRK11815 tRNA-dihydrouridine s 90.5 5.4 0.00012 37.8 12.4 90 46-136 116-232 (333)
500 PRK00043 thiE thiamine-phospha 90.4 5.9 0.00013 34.4 11.9 104 77-199 24-135 (212)
No 1
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=100.00 E-value=9.4e-62 Score=456.31 Aligned_cols=298 Identities=46% Similarity=0.737 Sum_probs=221.1
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHH--
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN-- 79 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~-- 79 (332)
.|+++|||+|||||+||+ ++++|+|+++||++||+|+|+.+ +.+++++++.|+++|+++++||+||+++..+....
T Consensus 3 ~~t~~lgi~~PIiqapM~-~is~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~ 80 (330)
T PF03060_consen 3 RLTELLGIKYPIIQAPMG-GISTPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEE 80 (330)
T ss_dssp HHHHHHT-SSSEEE---T-TTSSHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-
T ss_pred hHHHHhCCCcCEEcCCCC-CCChHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccchhh
Confidence 478999999999999998 69999999999999999999974 68999999999999999999999999987653211
Q ss_pred -----------HHHHH--------------hcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEE
Q 020013 80 -----------IKAIL--------------SEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAI 134 (332)
Q Consensus 80 -----------~~~~~--------------~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~i 134 (332)
.+... +.++++|.+++|.|+.++++++++.|++++++|+|+++|+++.+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 81 DAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred hhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 23333 44556999999987789999999999999999999999999999999999
Q ss_pred EEecCCCCcccCCCC-chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHH
Q 020013 135 IVQGREAGGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRK 213 (332)
Q Consensus 135 vv~G~eaGGh~~~~~-~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~ 213 (332)
|+||+|+|||.+... +++.|++++++.+ ++|||++|||+|+++++++|++|||||+|||+|++|+||++|+.||++
T Consensus 161 v~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~ 237 (330)
T PF03060_consen 161 VAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQA 237 (330)
T ss_dssp EEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHH
T ss_pred EEeccccCCCCCccccceeeHHHHHhhhc---CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHH
Confidence 999999999984244 4899999999998 799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEecccCCCCCCceeecChHHHhhhcCCCCCccCCCcccccccccchHHH--HHHhhCCCCcccccCCcc
Q 020013 214 LVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKK--IHRLAGTVPNVTTTGDID 291 (332)
Q Consensus 214 ~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gd~~ 291 (332)
|++++++++.... ...|+|+|+|+|+|+++|.+.. .....++ .++.+.+. +++. +...||.|
T Consensus 238 l~~a~~~dtv~t~---~~~G~~~R~l~n~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~------~~~~g~~~ 301 (330)
T PF03060_consen 238 LVDATEEDTVLTR---SFSGRPARVLRNPFTEEWEERS--PAPLPYP-----EQHYLTKDFCLRKA------AKEGGDVE 301 (330)
T ss_dssp HHHGGTT-EEEES---TTTTS-EEEE-SHHHHHHHHHH--HHHCCCH-----HHHHHHTHHHHHHH------HCCHT-TT
T ss_pred HHhCCCCCEEEEe---ecccchhhhhCcHHHHHHHhcc--cccccch-----hHHHHhhhhHHHHH------HHhcCCcc
Confidence 9998766633222 2359999999999999988511 1111122 12222222 3332 22337999
Q ss_pred ceeeeccccccccCCCCCHHHHHHHHHHH
Q 020013 292 SMVMFAGEGVGLIREILPAGEVVKQLVEG 320 (332)
Q Consensus 292 ~~~~~aG~~~~~i~~i~~~~~iv~~l~~e 320 (332)
++.+|+||++++|+++.|++|||++|++|
T Consensus 302 ~~~~~aGq~~g~i~~i~~a~eiv~~L~~e 330 (330)
T PF03060_consen 302 RGLLWAGQGVGLIKEIRPAAEIVEELVEE 330 (330)
T ss_dssp TS--B--GGGGGG-S-B-HHHHHHHHHHH
T ss_pred ceeEecChhhhhhcCCCcHHHHHHHHHhC
Confidence 99999999999999999999999999987
No 2
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=100.00 E-value=1.1e-58 Score=430.16 Aligned_cols=303 Identities=35% Similarity=0.594 Sum_probs=260.9
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHH
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENI 80 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~ 80 (332)
.|+++||++||||||||+ ++++++|+++||++||+|+|+.+ +.+++.+++.++++|+.+++|||+|++...+. .+.+
T Consensus 3 ~l~~~lgi~~Pii~apM~-~~s~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~ 80 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMA-WVATGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELV 80 (307)
T ss_pred hhhHHhCCCCCEEcCCCC-CCCCHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHH
Confidence 478999999999999998 79999999999999999999985 57899999999999999999999999886554 5667
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD 160 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~ 160 (332)
+.++++++++|.+++|. |.++++++++.|+++++.|++.++++++++.|+|+|+++|+++|||. +..+++.+++++++
T Consensus 81 ~~~~~~~v~~v~~~~g~-p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~-g~~~~~~ll~~v~~ 158 (307)
T TIGR03151 81 DLVIEEKVPVVTTGAGN-PGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHI-GELTTMALVPQVVD 158 (307)
T ss_pred HHHHhCCCCEEEEcCCC-cHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCC-CCCcHHHHHHHHHH
Confidence 88899999999999876 56799999999999999999999999999999999999999999997 56678999999999
Q ss_pred HhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeec
Q 020013 161 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQ 240 (332)
Q Consensus 161 ~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~ 240 (332)
.+ ++|||++|||.+++++.+++.+||+||++||+|+.|.||++|+.||+++++++.+++.... ..+|+|+|+|+
T Consensus 159 ~~---~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l~~~~~~dt~~t~---~~~G~~~R~l~ 232 (307)
T TIGR03151 159 AV---SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNYKEKVLKAKDRDTVVTG---ASTGHPVRVLK 232 (307)
T ss_pred Hh---CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHHHHHHHhCCCCCEEEEe---cCCCCceeeec
Confidence 87 7999999999999999999999999999999999999999999999999998665532222 13589999999
Q ss_pred ChHHHhhhcCCCCCccCCCcccccccccchHHHHHHhhCCCCcccccCCccceeeeccccccccCCCCCHHHHHHHHHHH
Q 020013 241 TPFFSNWKNIPAHENEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEGVGLIREILPAGEVVKQLVEG 320 (332)
Q Consensus 241 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~aG~~~~~i~~i~~~~~iv~~l~~e 320 (332)
|+|+++|.+.+.... ..++ ..+.....++ .+..+||.|++.+|+||++++|+++.|++|||++|++|
T Consensus 233 n~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~-------~~~~~g~~~~~~~~aGq~~~~i~~i~~~~eiv~~l~~e 299 (307)
T TIGR03151 233 NKLTRKYQELEKEGA-SPEE-----FEKLGAGALR-------RAVVEGDVENGSVMAGQIAGLIKEIKPAKEIIEDIMSE 299 (307)
T ss_pred CHHHHHHHhhcccCC-CHHH-----HHHHHHHHHH-------HHHHcCCccceeEeccchhhhcCCCCcHHHHHHHHHHH
Confidence 999999986443211 0111 1111222232 23468999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 020013 321 AQLLVHT 327 (332)
Q Consensus 321 ~~~~~~~ 327 (332)
+.+++++
T Consensus 300 ~~~~~~~ 306 (307)
T TIGR03151 300 AKEVIKR 306 (307)
T ss_pred HHHHHhc
Confidence 9888764
No 3
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=100.00 E-value=6.4e-55 Score=407.57 Aligned_cols=309 Identities=39% Similarity=0.604 Sum_probs=260.6
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCc-----EE-----EE-
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERP-----FG-----VG- 69 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p-----~g-----vn- 69 (332)
|.++..++++|||||+||+ ++|+++||.+||++|++|++... ..+.+.++++++++++.+++| |+ +|
T Consensus 5 ~~~~~~~~i~~PIiq~gM~-~vs~~~LA~Avs~aGglG~ia~~-~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~ 82 (336)
T COG2070 5 TRFILLLGIKYPIIQGGMA-GVSTPELAAAVSNAGGLGIIASG-GLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNV 82 (336)
T ss_pred chhhcccCccCCeecCCcc-ccCcHHHHHHHhccCCccccccc-cCCHHHHHHHHHHHHHhcCCcchhcccccccccchh
Confidence 3566889999999999998 69999999999999999988874 678899999999999999999 33 33
Q ss_pred -eecC--CCCHHHHHHHHhc-CCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc
Q 020013 70 -VVLA--FPHNENIKAILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 70 -l~~~--~~~~~~~~~~~~~-~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
++.. ....+.++.+++. ++.++.+++|.+|.++++.++..|+++++.+.++++++++++.|+|.||++|.|+|||.
T Consensus 83 ~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~ 162 (336)
T COG2070 83 NILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHR 162 (336)
T ss_pred heecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcC
Confidence 3332 2335667777777 99999999997789999999999999999999999999999999999999999999998
Q ss_pred CC---CCchhhhHHHHHHHhCCCC-CcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCce
Q 020013 146 IG---QDGLISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 221 (332)
Q Consensus 146 ~~---~~~~~~ll~~i~~~~~~~~-iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~ 221 (332)
+. ..+++.|++++++.+ + +|||++|||+|++++.+++++||+||||||+|+.|+||++|+.||++|++++++|
T Consensus 163 g~~~~~~~t~~Lv~ev~~~~---~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l~~a~~~D 239 (336)
T COG2070 163 GGVDLEVSTFALVPEVVDAV---DGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQALLQATEDD 239 (336)
T ss_pred CCCCCCccHHHHHHHHHHHh---cCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHHhcccccC
Confidence 43 567899999999999 6 9999999999999999999999999999999999999999999999999998777
Q ss_pred EEEEecccCCCCCCceeecChHHHhhhcCCCCC-ccCCCcccccccccchHHHHHHhhCCCCcccccCCccceeeecccc
Q 020013 222 YTDVFGRARWPGAPHRVLQTPFFSNWKNIPAHE-NEVNQPIIGRSTIHGIEKKIHRLAGTVPNVTTTGDIDSMVMFAGEG 300 (332)
Q Consensus 222 ~t~~~~~~~~~g~~~R~l~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~aG~~ 300 (332)
+....+ .+|+|+|+++|+|++++...+... ....++. ++.....+++ +...+|.+.+.+|+||.
T Consensus 240 tv~~~~---~~G~paR~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------a~~~~~~~~~~~~aGq~ 304 (336)
T COG2070 240 TVLTKS---FTGKPARVLRNPLTEEYEDPERAPKAPLLYPE-----EGKKVGQLRK-------AVALGDADKGNVWAGQG 304 (336)
T ss_pred eEEEcc---cCCCcchhhCcHHHHhhhcccccccCCCccch-----hhhcchHHHH-------HHhhcchhhcchhcchh
Confidence 544333 259999999999999987544321 1112221 1112222222 45688999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhhh
Q 020013 301 VGLIREILPAGEVVKQLVEGAQLLVHTKF 329 (332)
Q Consensus 301 ~~~i~~i~~~~~iv~~l~~e~~~~~~~~~ 329 (332)
.++++++.|++++++++.+++.+.++...
T Consensus 305 ~~~~~~~~~~~~~i~~~~e~~~~~~~~~~ 333 (336)
T COG2070 305 FGLINDIPTAADVIRSLVEEAKELTAGLA 333 (336)
T ss_pred hhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999876643
No 4
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=100.00 E-value=1.3e-51 Score=379.01 Aligned_cols=233 Identities=25% Similarity=0.449 Sum_probs=209.4
Q ss_pred CccceecCCCCCCCCc-HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCC---CHHHHHHH
Q 020013 9 FEYGIVQAPLGPDISG-PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFP---HNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~-~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~---~~~~~~~~ 83 (332)
++|||||+||+ |+++ |+|+++|||+||+|+|..+ +.++++++++|+++|++ +++|||||++...+ ..++++.+
T Consensus 1 ~~yPIiqgpM~-~vs~~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi 78 (320)
T cd04743 1 TRYPIVQGPMT-RVSDVAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVV 78 (320)
T ss_pred CCCCEECCCcC-CCCCcHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHH
Confidence 58999999998 7987 9999999999999999984 78999999999999996 89999999975422 36789999
Q ss_pred HhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC
Q 020013 84 LSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG 163 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~ 163 (332)
+++++++|++++|. |.. ++++++.|+++++.|+|+++++++++.|+|+||++|+|+|||. +..+++.|+|++.+.+.
T Consensus 79 ~e~~v~~V~~~~G~-P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~-G~~~t~~L~~~v~~~l~ 155 (320)
T cd04743 79 RAIKPTFALIAGGR-PDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHV-GPRSSFVLWESAIDALL 155 (320)
T ss_pred HhcCCcEEEEcCCC-hHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCC-CCCCchhhHHHHHHHHH
Confidence 99999999999886 444 7999999999999999999999999999999999999999998 67788999999988762
Q ss_pred C-------CCCcEEeecCcCCHHHHHHHHHcCc--------ceeeeccccccCccCC----CCHHHHHHHhcCCCceEEE
Q 020013 164 D-------RDIPIIAAGGIVDARGYVAALSLGA--------QGICLGTRFVASEESY----AHPEYKRKLVEMDKTEYTD 224 (332)
Q Consensus 164 ~-------~~iPviaaGGI~~~~~v~~al~~GA--------~gV~~GT~fl~t~Es~----~~~~~k~~~~~~~~t~~t~ 224 (332)
. .++|||++|||+|+++++.++.+|| +||+|||+|++|+||. +|+.||++++++++|+++.
T Consensus 156 ~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~~~~~~~~~k~~~l~a~~td~~~ 235 (320)
T cd04743 156 AANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAATRTALLE 235 (320)
T ss_pred HhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcCcccccHHHHHHHHhCCCceEEE
Confidence 1 2699999999999999999999998 8999999999999998 8899999999999998765
Q ss_pred EecccCCCCCCceeecChHHHhhhcCC
Q 020013 225 VFGRARWPGAPHRVLQTPFFSNWKNIP 251 (332)
Q Consensus 225 ~~~~~~~~g~~~R~l~n~~~~~~~~~~ 251 (332)
.+ +|+|.|+|+|+|+++|.+.+
T Consensus 236 t~-----~G~~~R~l~n~~~~~~~~~~ 257 (320)
T cd04743 236 TG-----PGHATRCVVSPFVDEFRATR 257 (320)
T ss_pred ec-----CCCceeecCCHHHHHHHHhh
Confidence 54 48999999999999997644
No 5
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=100.00 E-value=1.8e-43 Score=335.36 Aligned_cols=243 Identities=25% Similarity=0.341 Sum_probs=195.7
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-c-CCcEEEEeecCCC----
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-T-ERPFGVGVVLAFP---- 75 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~-~~p~gvnl~~~~~---- 75 (332)
+|+++||++||||||||+.|+++++|+++||++|++|+++++ +.+++++++.|+++|+. + ++|||||++.+..
T Consensus 5 ~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag-~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~ 83 (418)
T cd04742 5 SFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAG-GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPEL 83 (418)
T ss_pred HHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCC-CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchh
Confidence 588999999999999998679999999999999999999985 57999999999999984 7 8999999997542
Q ss_pred CHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCE------------EEEecC------------------------
Q 020013 76 HNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVK------------VVPQVG------------------------ 118 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~------------v~~~v~------------------------ 118 (332)
..+.++.++++++++|..+. ..+++.+ ...+..|++ |+..|+
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G 162 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEG 162 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcch-hhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcC
Confidence 24568889999999998863 2223333 355665543 777765
Q ss_pred --CHHHHHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--------CCCcEEeecCcCCHHHHHHHHHc
Q 020013 119 --SFDEARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--------RDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 119 --s~~~a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--------~~iPviaaGGI~~~~~v~~al~~ 187 (332)
|+++|+.+.+.| +|.|+++ .|+|||+ +..+++.|+|.+.+.... .++||+++|||+|+++++++|++
T Consensus 163 ~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~-g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~al 240 (418)
T cd04742 163 KITEEQAELARRVPVADDITVE-ADSGGHT-DNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFAL 240 (418)
T ss_pred CCCHHHHHHHHhCCCCCEEEEc-ccCCCCC-CCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHc
Confidence 567777788888 6999999 8999998 555677787777653211 15999999999999999999999
Q ss_pred CcceeeeccccccCccCCCCHHHHHHHhcCCCce--EEEEecccCCCCCCceeecChH-----HHhhhc
Q 020013 188 GAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE--YTDVFGRARWPGAPHRVLQTPF-----FSNWKN 249 (332)
Q Consensus 188 GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~--~t~~~~~~~~~g~~~R~l~n~~-----~~~~~~ 249 (332)
||++|++||+|++|.||.+|+.||++|++++.+| +|-..+. .-.|.+.|+|+|.+ .+++-+
T Consensus 241 GAd~V~~GT~flat~Ea~~s~~~K~~L~~a~~~DT~~tp~~dm-fe~G~~vqvlk~g~~f~~ra~kl~~ 308 (418)
T cd04742 241 GADFIVTGSINQCTVEAGTSDAVKDLLQKAGVQDTAYAPAADM-FELGAKVQVLKRGTLFPARANKLYE 308 (418)
T ss_pred CCcEEeeccHHHhCccccCCHHHHHHHHhCCCCCeEEeccccc-ccCCceehhhhhcccchHHHHHHHH
Confidence 9999999999999999999999999999986555 3322211 11488999999999 666643
No 6
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=100.00 E-value=6.1e-40 Score=313.05 Aligned_cols=216 Identities=25% Similarity=0.367 Sum_probs=176.7
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCC-c-EEEEeecCCCC---
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTER-P-FGVGVVLAFPH--- 76 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~-p-~gvnl~~~~~~--- 76 (332)
+|+++||++||||||||+.|+++++|+++||++|++|+|+++ +.+++++++.|+++|+.++. | ||||++.+.++
T Consensus 10 ~f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~ 88 (444)
T TIGR02814 10 AFREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPAL 88 (444)
T ss_pred HHHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCccc
Confidence 478999999999999998679999999999999999999985 57999999999999987655 7 99999986532
Q ss_pred -HHHHHHHHhcCCcEEEEccC-CCcHHHHHHHHhCCC------------EEEEecCCHHHH-------------------
Q 020013 77 -NENIKAILSEKVAVLQVSWG-EYSEELVLEAHSAGV------------KVVPQVGSFDEA------------------- 123 (332)
Q Consensus 77 -~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~~~~g~------------~v~~~v~s~~~a------------------- 123 (332)
.+.++.+++.++++|..+.. ..++.++ ..+..|+ +|+..|++++.+
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 35678888999999988733 1122232 4444443 788777655544
Q ss_pred -------HHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHH---HHhC-----CCCCcEEeecCcCCHHHHHHHHHc
Q 020013 124 -------RKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVV---DLIG-----DRDIPIIAAGGIVDARGYVAALSL 187 (332)
Q Consensus 124 -------~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~---~~~~-----~~~iPviaaGGI~~~~~v~~al~~ 187 (332)
+.+.+.| +|.|+++ .|+|||+ +..+++.|+|++. +.+. ..++||+++|||+|+++++++|++
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHt-g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaL 245 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHT-DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFML 245 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCC-CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHc
Confidence 4455666 6999997 8999998 6667889999886 3331 125899999999999999999999
Q ss_pred CcceeeeccccccCccCCCCHHHHHHHhcCCCce
Q 020013 188 GAQGICLGTRFVASEESYAHPEYKRKLVEMDKTE 221 (332)
Q Consensus 188 GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~ 221 (332)
|||+|++||+|++|.||++|+.||++|.+++.+|
T Consensus 246 GAdgV~~GT~flat~Esgas~~~K~~L~~a~~~D 279 (444)
T TIGR02814 246 GADFIVTGSVNQCTVEAGTSDNVKKLLAKADVQD 279 (444)
T ss_pred CCcEEEeccHHHhCccccCCHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999986655
No 7
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.97 E-value=5.3e-29 Score=224.00 Aligned_cols=221 Identities=47% Similarity=0.729 Sum_probs=191.6
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC---CCHHHHHHHHhc
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF---PHNENIKAILSE 86 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~---~~~~~~~~~~~~ 86 (332)
++||+++||. |+++++++.+++++|++|++.. ++.+++.+.+.++++++..+.|+++|++.+. ...+.++.+.+.
T Consensus 2 ~~pi~~a~m~-g~~~~~~~~~~~~~G~ig~i~~-~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ 79 (236)
T cd04730 2 RYPIIQAPMA-GVSTPELAAAVSNAGGLGFIGA-GYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEE 79 (236)
T ss_pred CCCEECCCCC-CCCCHHHHHHHHhCCCccccCC-CCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhC
Confidence 6899999998 7999999999999999999976 4678999988999988766678999999975 446678889999
Q ss_pred CCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC-CchhhhHHHHHHHhCCC
Q 020013 87 KVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-DGLISLLPMVVDLIGDR 165 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~-~~~~~ll~~i~~~~~~~ 165 (332)
+++.|+++.+ ++.++++.+++.+++++..+.+.++++.+.+.|+|+|++.+...|||.... ...+.+++++++..
T Consensus 80 g~d~v~l~~~-~~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--- 155 (236)
T cd04730 80 GVPVVSFSFG-PPAEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--- 155 (236)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---
Confidence 9999999866 578889999989999999999999999999999999999988888886322 24577888888876
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceee
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVL 239 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l 239 (332)
++||+++|||.+++++.+++..|||||++||+|+.+.|++.+..+|+++.++...++....++ +|+|.|++
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 226 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYKQALLAATAEDTVLTRAF---SGRPARGL 226 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHHHHHHcCCCCCeEEEecc---CCCcccee
Confidence 799999999998999999999999999999999999999999999999999876553333443 58999988
No 8
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.95 E-value=3.3e-26 Score=214.36 Aligned_cols=201 Identities=22% Similarity=0.308 Sum_probs=155.7
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC--CCHHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENI 80 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~--~~~~~~ 80 (332)
|++++++++|||++||. ++++++|+.+++++||+|+|.. + .+++++.+.++++|. ++.+|..+.. ...+.+
T Consensus 27 l~~~~~l~~Piv~apM~-~vt~~~ma~ava~~GglGvi~~-~-~~~~~~~~~i~~vk~----~l~v~~~~~~~~~~~~~~ 99 (325)
T cd00381 27 LTKNITLNIPLVSAPMD-TVTESEMAIAMARLGGIGVIHR-N-MSIEEQAEEVRKVKG----RLLVGAAVGTREDDKERA 99 (325)
T ss_pred ecCccccCCCEEecCCC-cCCcHHHHHHHHHCCCEEEEeC-C-CCHHHHHHHHHHhcc----CceEEEecCCChhHHHHH
Confidence 55678999999999998 7999999999999999999986 3 577888888888763 4555554432 335678
Q ss_pred HHHHhcCCcEEEEc--cCCC--cHHHHHHHHhCC--CEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-----CCC
Q 020013 81 KAILSEKVAVLQVS--WGEY--SEELVLEAHSAG--VKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-----IGQ 148 (332)
Q Consensus 81 ~~~~~~~~~~I~~~--~g~~--~~~~i~~~~~~g--~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-----~~~ 148 (332)
+.++++++++|.++ +|.. ..+.++.+++.+ ++++ ..+.+.++++.+.++|+|+|++.+..+..+. +..
T Consensus 100 ~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g 179 (325)
T cd00381 100 EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVG 179 (325)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCC
Confidence 88899999998864 3432 245677788765 7776 4889999999999999999998432111111 112
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHH
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~ 210 (332)
.+.+.+++.+.+.....++|||++|||.+++++.+++++||++|+|||+|+.|+||+.+-.+
T Consensus 180 ~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~ 241 (325)
T cd00381 180 VPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIE 241 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEE
Confidence 35677778777766433699999999999999999999999999999999999999875433
No 9
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.95 E-value=3.5e-26 Score=216.20 Aligned_cols=204 Identities=22% Similarity=0.317 Sum_probs=158.1
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCC----CCCCHHHHHHHHHH---------HHhhcCCcE-----
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP----DWEAPDYLRDLIRK---------TRSLTERPF----- 66 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~----~~~~~e~~~~~i~~---------~r~~~~~p~----- 66 (332)
..+++++||+++||. ++++++++++++++|++|++... .+.+++.+..++.. +++++..||
T Consensus 42 ~~~~i~~Piv~a~M~-gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~ 120 (368)
T PRK08649 42 DAYRFEIPIIASPMD-AVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELI 120 (368)
T ss_pred cceeccCcEeccCCc-ccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHH
Confidence 567899999999998 79999999999999999999842 24578887777653 355566777
Q ss_pred ----------EEEeecCC---CCHHHHHHHHhcCCcEEEEccC---------C-CcHHHHHHHHhCCCEEEE-ecCCHHH
Q 020013 67 ----------GVGVVLAF---PHNENIKAILSEKVAVLQVSWG---------E-YSEELVLEAHSAGVKVVP-QVGSFDE 122 (332)
Q Consensus 67 ----------gvnl~~~~---~~~~~~~~~~~~~~~~I~~~~g---------~-~~~~~i~~~~~~g~~v~~-~v~s~~~ 122 (332)
++|+.+.. ...+.++.+.++++|+|.+|.. . .+.++.+.+++.+++|++ .+.|.+.
T Consensus 121 ~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~ 200 (368)
T PRK08649 121 TERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTT 200 (368)
T ss_pred HHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHH
Confidence 77765421 2357788899999999999741 1 356677778888999987 8999999
Q ss_pred HHHHHHcCCCEEEEecCCCC-cccCCC-----CchhhhHHHHHHHhC-------CCCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 123 ARKAVNAGVDAIIVQGREAG-GHVIGQ-----DGLISLLPMVVDLIG-------DRDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaG-Gh~~~~-----~~~~~ll~~i~~~~~-------~~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
++++++.|||+|.+ |.+.| +|+... .+.+..+.++.+..+ ..++|||++|||.++.|++++|++||
T Consensus 201 A~~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGA 279 (368)
T PRK08649 201 ALHLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGA 279 (368)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCC
Confidence 99999999999977 66555 454211 233444444443211 11599999999999999999999999
Q ss_pred ceeeeccccccCccCCCCHHH
Q 020013 190 QGICLGTRFVASEESYAHPEY 210 (332)
Q Consensus 190 ~gV~~GT~fl~t~Es~~~~~~ 210 (332)
|+|+|||+|+.|.||+.+-.|
T Consensus 280 d~Vm~Gs~fa~t~Espg~~~~ 300 (368)
T PRK08649 280 DAVMLGSPLARAAEAPGRGWH 300 (368)
T ss_pred CeecccchhcccccCCCcccc
Confidence 999999999999999988744
No 10
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.94 E-value=1.3e-25 Score=213.10 Aligned_cols=203 Identities=19% Similarity=0.323 Sum_probs=152.9
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEe----------
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGV---------- 70 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl---------- 70 (332)
.|++.|++++||||+||. ++++++||+++|++||+|+|.. ..++|+++++++++|+.. ..++..|.
T Consensus 34 ~lt~~l~l~iPIvsApMd-~Vt~~~lA~AvA~aGGlGvI~~--~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~ 110 (404)
T PRK06843 34 QLTKNISLNIPFLSSAMD-TVTESQMAIAIAKEGGIGIIHK--NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIF 110 (404)
T ss_pred hhhhccCCCCCEecCCCC-CCCCHHHHHHHHHCCCEEEecC--CCCHHHHHHHHHHHHhhcCCCceeecccccccchhhe
Confidence 367899999999999998 7999999999999999999985 368999999999988653 12233221
Q ss_pred ------------------------------------ecCC--CCHHHHHHHHhcCCcEEEEc--cCC--CcHHHHHHHHh
Q 020013 71 ------------------------------------VLAF--PHNENIKAILSEKVAVLQVS--WGE--YSEELVLEAHS 108 (332)
Q Consensus 71 ------------------------------------~~~~--~~~~~~~~~~~~~~~~I~~~--~g~--~~~~~i~~~~~ 108 (332)
-+.. ...+.++.+.++|+|+|.+. .|. ...+.++.+++
T Consensus 111 t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 111 TAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred eccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 1111 11367888899999999863 232 12245666665
Q ss_pred C--CCEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------CchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 109 A--GVKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 109 ~--g~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
. +..+ +..|.|.++++.+.++|+|+|.+ |.+.|+.+.+. .+.+..+..+.+.+...++|||+.|||.++.
T Consensus 191 ~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~ 269 (404)
T PRK06843 191 KYPNLDLIAGNIVTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSG 269 (404)
T ss_pred hCCCCcEEEEecCCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHH
Confidence 3 4555 56899999999999999999997 77666521111 1344555444444332379999999999999
Q ss_pred HHHHHHHcCcceeeeccccccCccCCCCH
Q 020013 180 GYVAALSLGAQGICLGTRFVASEESYAHP 208 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t~Es~~~~ 208 (332)
++.++|++||++|+|||+|..|+||+.+-
T Consensus 270 Di~KALalGA~aVmvGs~~agt~Espg~~ 298 (404)
T PRK06843 270 DVVKAIAAGADSVMIGNLFAGTKESPSEE 298 (404)
T ss_pred HHHHHHHcCCCEEEEcceeeeeecCCCcE
Confidence 99999999999999999999999998754
No 11
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.90 E-value=3.3e-22 Score=196.77 Aligned_cols=132 Identities=23% Similarity=0.367 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCcEEEEcc--CCCcH--HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEe---cCCCCccc-
Q 020013 77 NENIKAILSEKVAVLQVSW--GEYSE--ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQ---GREAGGHV- 145 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~--g~~~~--~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~---G~eaGGh~- 145 (332)
.+.++.+.++++|+|.+.. |.... +.++++++. +..++ ..|.|.++++.+.++|+|+|++. |..+.+|.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~ 329 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEV 329 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccc
Confidence 3567788899999998742 33222 567888874 57776 47999999999999999999983 22222221
Q ss_pred ----CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHH
Q 020013 146 ----IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYK 211 (332)
Q Consensus 146 ----~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k 211 (332)
......+..++++.+.. ++|||++|||.++.++.++|++||++|+|||+|..|.||+.+..+|
T Consensus 330 ~~~g~~~~~~i~~~~~~~~~~---~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~ 396 (505)
T PLN02274 330 CAVGRGQATAVYKVASIAAQH---GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQ 396 (505)
T ss_pred cccCCCcccHHHHHHHHHHhc---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeee
Confidence 11234566677777765 7999999999999999999999999999999999999999987665
No 12
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.89 E-value=1.8e-22 Score=190.44 Aligned_cols=202 Identities=20% Similarity=0.289 Sum_probs=144.1
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCC----CCCCHHHHHHHHHH-------------HHhhcCCcEE
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAP----DWEAPDYLRDLIRK-------------TRSLTERPFG 67 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~----~~~~~e~~~~~i~~-------------~r~~~~~p~g 67 (332)
+.+.+++||+++||+ |+++++|+..+++.|++|++... ++.+++.+..+|.. ++++...|+.
T Consensus 39 ~~~~l~~PivlAPMa-gVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~ 117 (369)
T TIGR01304 39 DAYRFELPFIAHPMD-ALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLK 117 (369)
T ss_pred cceecCCceeecCCC-cccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccC
Confidence 457788999999998 79999999999999999998642 12344333222222 1222222333
Q ss_pred EEe-----------------ecC-CCCHHHHHHHHhcCCcEEEEc---------cC-CCcHHHHHHHHhCCCEEEE-ecC
Q 020013 68 VGV-----------------VLA-FPHNENIKAILSEKVAVLQVS---------WG-EYSEELVLEAHSAGVKVVP-QVG 118 (332)
Q Consensus 68 vnl-----------------~~~-~~~~~~~~~~~~~~~~~I~~~---------~g-~~~~~~i~~~~~~g~~v~~-~v~ 118 (332)
.++ -.. ....+..+.+.++|+|+|.+| .+ .++.++.+.+++.+++|+. .+.
T Consensus 118 p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~ 197 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVN 197 (369)
T ss_pred hHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCC
Confidence 222 111 123577889999999999986 11 2456677777888999986 789
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCC-----CchhhhHHHHHHHh----CC---CCCcEEeecCcCCHHHHHHHHH
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQ-----DGLISLLPMVVDLI----GD---RDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~-----~~~~~ll~~i~~~~----~~---~~iPviaaGGI~~~~~v~~al~ 186 (332)
+.++++++.+.|||+|+ +.+.|+|.... .+....++++..+. .+ ..+|||++|||.++.|++++|+
T Consensus 198 t~e~A~~~~~aGaDgV~--~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA 275 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVI--VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA 275 (369)
T ss_pred CHHHHHHHHHcCCCEEE--ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH
Confidence 99999999999999998 44445554211 23444555554321 11 1499999999999999999999
Q ss_pred cCcceeeeccccccCccCCCCHH
Q 020013 187 LGAQGICLGTRFVASEESYAHPE 209 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t~Es~~~~~ 209 (332)
+|||+|+|||+|+.+.||+..-.
T Consensus 276 lGAdaV~iGt~~a~a~Eapg~~~ 298 (369)
T TIGR01304 276 CGADAVVLGSPLARAAEAPGRGY 298 (369)
T ss_pred cCCCEeeeHHHHHhhhcCCCCCC
Confidence 99999999999999999987643
No 13
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.87 E-value=5.9e-21 Score=187.86 Aligned_cols=205 Identities=25% Similarity=0.413 Sum_probs=151.1
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC-------------------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE------------------- 63 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~------------------- 63 (332)
+++.+++++|||++||. ++++++||.+++++||+|+|.. .+++|...++++++++.-+
T Consensus 43 l~~~~~l~~Pii~a~M~-~vt~~~ma~a~a~~GglGvi~~--~~~~e~~~~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~ 119 (495)
T PTZ00314 43 LTRNIRLKIPIVSSPMD-TVTEHKMAIAMALMGGIGVIHN--NCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVL 119 (495)
T ss_pred ccCCcccCCceeecCcc-ccccHHHHHHHHHCCCeEEecC--CCCHHHHHHHHhhccccccccccCCeecCCCCCHHHHH
Confidence 56889999999999998 7999999999999999999964 4688887777777764200
Q ss_pred ---------------------CcEEE------------------------Eeec-------------------------C
Q 020013 64 ---------------------RPFGV------------------------GVVL-------------------------A 73 (332)
Q Consensus 64 ---------------------~p~gv------------------------nl~~-------------------------~ 73 (332)
+.+|+ ++.. +
T Consensus 120 ~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd 199 (495)
T PTZ00314 120 EIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN 199 (495)
T ss_pred HHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc
Confidence 00000 0000 0
Q ss_pred -------------------CC---------------------CHHHHHHHHhcCCcEEEEcc--CCCc--HHHHHHHHhC
Q 020013 74 -------------------FP---------------------HNENIKAILSEKVAVLQVSW--GEYS--EELVLEAHSA 109 (332)
Q Consensus 74 -------------------~~---------------------~~~~~~~~~~~~~~~I~~~~--g~~~--~~~i~~~~~~ 109 (332)
.+ ..+.++.+.+.++++|.+.. |... .+.++.+++.
T Consensus 200 ~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~ 279 (495)
T PTZ00314 200 DNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN 279 (495)
T ss_pred CCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh
Confidence 00 02456677888999998643 3322 2567777765
Q ss_pred --CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------CchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 110 --GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 110 --g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
+++++. .+.|.++++.+.++|+|+|.+ |...|+++... .+.+..+.++.+..+..++|||++|||.++.+
T Consensus 280 ~~~~~v~aG~V~t~~~a~~~~~aGad~I~v-g~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~d 358 (495)
T PTZ00314 280 YPHVDIIAGNVVTADQAKNLIDAGADGLRI-GMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGD 358 (495)
T ss_pred CCCceEEECCcCCHHHHHHHHHcCCCEEEE-CCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHH
Confidence 567765 788999999999999999988 44444433111 24456666666655434799999999999999
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHH
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYK 211 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k 211 (332)
+.+|+++||++|+|||.|..|.||+....||
T Consensus 359 i~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~ 389 (495)
T PTZ00314 359 ICKALALGADCVMLGSLLAGTEEAPGEYFFK 389 (495)
T ss_pred HHHHHHcCCCEEEECchhccccccCCceeee
Confidence 9999999999999999999999998877665
No 14
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.87 E-value=1.3e-20 Score=175.33 Aligned_cols=189 Identities=21% Similarity=0.253 Sum_probs=145.5
Q ss_pred hhhcCC--ccceecCCCCCCCC------cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC
Q 020013 4 RGMLGF--EYGIVQAPLGPDIS------GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (332)
Q Consensus 4 ~~~l~~--~~Pii~apM~~g~s------~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~ 75 (332)
+++||. ++||+.+||+ +.+ +..++.+++++|..+.++.....+++.++ +..+.|+.+|++....
T Consensus 56 ~~~lg~~~~~Pi~iapm~-g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~-------~~~~~~~~~ql~~~~~ 127 (299)
T cd02809 56 TTLLGQKLAMPFGIAPTG-LQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVA-------AAAPGPRWFQLYVPRD 127 (299)
T ss_pred eEECCeecCCCeeeCccc-ccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHH-------HhcCCCeEEEEeecCC
Confidence 356675 5899999997 454 56899999999988888763334444433 2234799999987532
Q ss_pred C---HHHHHHHHhcCCcEEEEccCCCc------HHHHHHHHhC-CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcc
Q 020013 76 H---NENIKAILSEKVAVLQVSWGEYS------EELVLEAHSA-GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 76 ~---~~~~~~~~~~~~~~I~~~~g~~~------~~~i~~~~~~-g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh 144 (332)
. .+.++.+.+.++++|.++.+++. .+.++.+++. +++++.+ +.++++++.+++.|+|+|++.|. ||+
T Consensus 128 ~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~--gG~ 205 (299)
T cd02809 128 REITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNH--GGR 205 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCC--CCC
Confidence 1 33456667789999999988754 3678888875 6776644 78999999999999999999875 455
Q ss_pred cC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 145 VI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 145 ~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.. +..+++.+++++++.+.. ++|||++|||.++.++.+++++|||+|++|++|+....
T Consensus 206 ~~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~ 264 (299)
T cd02809 206 QLDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLA 264 (299)
T ss_pred CCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 42 234678999999887732 59999999999999999999999999999999997643
No 15
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.85 E-value=3.4e-19 Score=166.35 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=146.6
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc---------CCcEEEEeecCC
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT---------ERPFGVGVVLAF 74 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~---------~~p~gvnl~~~~ 74 (332)
++.+.++.|||.+||. .++++++|.++++.||+|+|.. + .+.++..+.++++++.. ...+++-+-...
T Consensus 31 ~~~~~l~iPivsa~MD-tVte~~mAiama~~Gglgvih~-~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~ 107 (352)
T PF00478_consen 31 TRNITLKIPIVSAPMD-TVTESEMAIAMARLGGLGVIHR-N-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD 107 (352)
T ss_dssp STSEEESSSEEE-SST-TTSSHHHHHHHHHTTSEEEEES-S-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESST
T ss_pred cCCEeecCceEecCcc-ccchHHHHHHHHHhcCCceecC-C-CCHHHHHHHHhhhccccccccccccccceEEEEecCCH
Confidence 3566788999999998 7999999999999999999987 3 57777778888887531 234555555554
Q ss_pred CCHHHHHHHHhcCCcEEEEc--cCCCcH---HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccC
Q 020013 75 PHNENIKAILSEKVAVLQVS--WGEYSE---ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 75 ~~~~~~~~~~~~~~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~ 146 (332)
.+.+.++.+.++++|+|.+. .|. .. +.++.+++. .++|+ ..|.|.+.++...++|+|+|.+ |...|..+.
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~-s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkV-GiGpGsiCt 185 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGH-SEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKV-GIGPGSICT 185 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTT-SHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SSSSSTTBH
T ss_pred HHHHHHHHHHHcCCCEEEccccCcc-HHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEE-eccCCcccc
Confidence 45678888999999999873 343 44 344555543 36666 5789999999999999999998 443333221
Q ss_pred -----C-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC
Q 020013 147 -----G-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 147 -----~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~ 206 (332)
+ ..+.+..+.++.++....++|||+.|||.++.|+.+||++|||.|+||+.|..|.|||.
T Consensus 186 Tr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG 251 (352)
T PF00478_consen 186 TREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPG 251 (352)
T ss_dssp HHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSS
T ss_pred cccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCC
Confidence 0 13456677777776654579999999999999999999999999999999999999865
No 16
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.84 E-value=2.4e-20 Score=179.13 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=149.0
Q ss_pred chhhcCCccceecCCCCCCCCc----HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC---
Q 020013 3 WRGMLGFEYGIVQAPLGPDISG----PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP--- 75 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~----~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~--- 75 (332)
+++.+++++||+++||++|..+ ++|+++++++|+++.++.+ ..++++++..+..+++.++.|||||......
T Consensus 70 ~~~~~~i~~Pi~~~~Ms~Gs~s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~~~i~q~~~~~fGv~~~~~~~~~~ 148 (392)
T cd02808 70 AEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEG-GELPEEREGGGDIIKQVASGRFGVRPEYLNKADA 148 (392)
T ss_pred cCCccccccceEecCCCCCcccHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhhheEEEecCCCCccCHHHcccCcE
Confidence 4678899999999999866543 7999999999999999985 5799999999999999999999998643211
Q ss_pred -------------------CHHHHHHHHhcC----CcEEEEc----cCC--CcHHHHHHHHhC-C-CEEEEecC---CHH
Q 020013 76 -------------------HNENIKAILSEK----VAVLQVS----WGE--YSEELVLEAHSA-G-VKVVPQVG---SFD 121 (332)
Q Consensus 76 -------------------~~~~~~~~~~~~----~~~I~~~----~g~--~~~~~i~~~~~~-g-~~v~~~v~---s~~ 121 (332)
.+-..+++...+ .++++-. +.. ...++++.+++. + .+|+.+.. +.+
T Consensus 149 ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~ 228 (392)
T cd02808 149 IEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEG 228 (392)
T ss_pred EEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHH
Confidence 011233333333 3444321 111 014567788875 3 67765543 466
Q ss_pred HHHHHHHcC-CCEEEEecCCCCcccCC-------CCchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 122 EARKAVNAG-VDAIIVQGREAGGHVIG-------QDGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 122 ~a~~a~~~g-~D~ivv~G~eaGGh~~~-------~~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
++..+.+.+ +|+|+++|.++|+|... ..++...++++.+.+.. .++|||++|||.++.|+.++|++||
T Consensus 229 ~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGA 308 (392)
T cd02808 229 DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGA 308 (392)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCC
Confidence 666666555 99999999988776421 13566778888776531 2699999999999999999999999
Q ss_pred ceeeeccccccCccCC
Q 020013 190 QGICLGTRFVASEESY 205 (332)
Q Consensus 190 ~gV~~GT~fl~t~Es~ 205 (332)
|+|.+||+||.+.+|.
T Consensus 309 d~V~ig~~~l~al~c~ 324 (392)
T cd02808 309 DAVGIGTAALIALGCI 324 (392)
T ss_pred CeeeechHHHHhcchH
Confidence 9999999999998874
No 17
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.84 E-value=9.1e-20 Score=172.61 Aligned_cols=186 Identities=26% Similarity=0.312 Sum_probs=142.2
Q ss_pred CccceecCCCCCCCCc------HHHHHHHHhCC---CceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCC---
Q 020013 9 FEYGIVQAPLGPDISG------PELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFP--- 75 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~------~~la~avs~aG---glG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~--- 75 (332)
+++||+++||++ .++ ++|+.+++++| ++|..... +.+|+ +++.++.+|+.+ +.|+.+|++.+..
T Consensus 59 l~~Pi~i~~MtG-gs~~~~~in~~La~~a~~~G~~~~~Gs~~~~-~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~ 135 (352)
T PRK05437 59 LSAPFLINAMTG-GSEKAKEINRKLAEAAEELGIAMGVGSQRAA-LKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGY 135 (352)
T ss_pred ecCCEEecccCC-CChhHHHHHHHHHHHHHHcCCCeEecccHhh-ccChh-hHHHHHHHHHHCCCceEEeecCccccCCC
Confidence 789999999995 565 99999999999 88888764 66787 888999999886 8999999998654
Q ss_pred -CHHHHHHHHhcCCcEEEEccCCC-----------cH---HHHHHHHhC-CCEEEEe-c---CCHHHHHHHHHcCCCEEE
Q 020013 76 -HNENIKAILSEKVAVLQVSWGEY-----------SE---ELVLEAHSA-GVKVVPQ-V---GSFDEARKAVNAGVDAII 135 (332)
Q Consensus 76 -~~~~~~~~~~~~~~~I~~~~g~~-----------~~---~~i~~~~~~-g~~v~~~-v---~s~~~a~~a~~~g~D~iv 135 (332)
.++..+.+...+++++.+|.+.. .. +.++.+++. +++|+.+ + .+.++++.+.+.|+|+|+
T Consensus 136 ~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~ 215 (352)
T PRK05437 136 GVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAID 215 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEE
Confidence 13333444446889888875321 11 334555554 7887765 3 488999999999999999
Q ss_pred EecCCCCc--------ccCC-----------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 136 VQGREAGG--------HVIG-----------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 136 v~G~eaGG--------h~~~-----------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++|. || |... ..++...++++++... ++|||++|||.++.|+.+++++|||+|++|+
T Consensus 216 Vsg~--GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~--~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~ 291 (352)
T PRK05437 216 VAGA--GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLP--DLPIIASGGIRNGLDIAKALALGADAVGMAG 291 (352)
T ss_pred ECCC--CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHcCCCEEEEhH
Confidence 9886 44 2210 1235567777777632 7999999999999999999999999999999
Q ss_pred ccccC
Q 020013 197 RFVAS 201 (332)
Q Consensus 197 ~fl~t 201 (332)
.|+..
T Consensus 292 ~~l~~ 296 (352)
T PRK05437 292 PFLKA 296 (352)
T ss_pred HHHHH
Confidence 99976
No 18
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.84 E-value=1.2e-19 Score=170.30 Aligned_cols=191 Identities=25% Similarity=0.290 Sum_probs=141.6
Q ss_pred hcC--CccceecCCCCCCCC------cHHHHHHHHhCC---CceeecCCCCCCHHHHHHHHHHHHhhcC-CcEEEEeecC
Q 020013 6 MLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLA 73 (332)
Q Consensus 6 ~l~--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~ 73 (332)
++| +++||+++||++ .+ +++|+.+++++| ++|....+ +.+++.. +.++.+|+.++ .||.+|+.+.
T Consensus 46 ~~G~~l~~Pi~ia~mtG-g~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~ 122 (326)
T cd02811 46 FLGKRLSAPLLISAMTG-GSEKAKEINRNLAEAAEELGIAMGVGSQRAA-LEDPELA-ESFTVVREAPPNGPLIANLGAV 122 (326)
T ss_pred ECCceecCCEEEeCCCC-CChHHHHHHHHHHHHHHHcCCCeEecCchhh-ccChhhh-hHHHHHHHhCCCceEEeecCcc
Confidence 455 789999999994 56 799999999999 78877653 6678755 78888888865 9999999886
Q ss_pred CC---CHH-HHHHHHhcCCcEEEEccCC-----------CcH---HHHHHHHhC-CCEEEEec----CCHHHHHHHHHcC
Q 020013 74 FP---HNE-NIKAILSEKVAVLQVSWGE-----------YSE---ELVLEAHSA-GVKVVPQV----GSFDEARKAVNAG 130 (332)
Q Consensus 74 ~~---~~~-~~~~~~~~~~~~I~~~~g~-----------~~~---~~i~~~~~~-g~~v~~~v----~s~~~a~~a~~~g 130 (332)
.. ..+ ..+.+...+++++.+|.+. ... +.++.+++. .++|+.+. .+.++++.+.+.|
T Consensus 123 ~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~G 202 (326)
T cd02811 123 QLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAG 202 (326)
T ss_pred ccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcC
Confidence 52 223 3333344688998887532 111 234445543 77877654 5889999999999
Q ss_pred CCEEEEecCCCCc--------ccCC-------------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCc
Q 020013 131 VDAIIVQGREAGG--------HVIG-------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGA 189 (332)
Q Consensus 131 ~D~ivv~G~eaGG--------h~~~-------------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA 189 (332)
+|+|+++|. || |... ..++...++++++.+. ++|||++|||.++.++.+++++||
T Consensus 203 vd~I~vsG~--GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGA 278 (326)
T cd02811 203 VKAIDVAGA--GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGA 278 (326)
T ss_pred CCEEEECCC--CCCcccccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCC
Confidence 999999886 44 2210 1133456667766553 699999999999999999999999
Q ss_pred ceeeeccccccCcc
Q 020013 190 QGICLGTRFVASEE 203 (332)
Q Consensus 190 ~gV~~GT~fl~t~E 203 (332)
|+|++|+.|+..--
T Consensus 279 d~V~i~~~~L~~~~ 292 (326)
T cd02811 279 DLVGMAGPFLKAAL 292 (326)
T ss_pred CEEEEcHHHHHHHh
Confidence 99999999886653
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.81 E-value=3.8e-18 Score=156.64 Aligned_cols=195 Identities=18% Similarity=0.149 Sum_probs=148.0
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
+-++.|||.+.|. .+++.++|.++++.|+++++.- ..++|+..+.+++.+.-......+.+-+...+.+.++.++++
T Consensus 42 ~~~~iPii~AnMd-tv~~~~mA~~la~~g~~~~iHk--~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a 118 (343)
T TIGR01305 42 TYSGVPIIAANMD-TVGTFEMAAALSQHSIFTAIHK--HYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEA 118 (343)
T ss_pred eeeCCceEecCCC-cccCHHHHHHHHHCCCeEEEee--CCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhc
Confidence 3467899999998 7999999999999999999986 358887777776654322222333333333446778888887
Q ss_pred C--CcEEEEc--cCCCcH---HHHHHHHhC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEe-cCCCCcccCC------CC
Q 020013 87 K--VAVLQVS--WGEYSE---ELVLEAHSA--GVKVVPQ-VGSFDEARKAVNAGVDAIIVQ-GREAGGHVIG------QD 149 (332)
Q Consensus 87 ~--~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~~~-v~s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~------~~ 149 (332)
+ +|+|.+. .|. .. +.++.+++. +..|+.. |.+.+.++.+.++|+|+|.|- |+ |..+.+ ..
T Consensus 119 ~~~~d~iviD~AhGh-s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGp--GSicttR~~~Gvg~ 195 (343)
T TIGR01305 119 VPQLKFICLDVANGY-SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGP--GSVCTTRTKTGVGY 195 (343)
T ss_pred CCCCCEEEEECCCCc-HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccC--CCcccCceeCCCCc
Confidence 4 8998773 343 33 445666653 6677765 999999999999999999882 33 222111 12
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
+.+..+++++++....++|||+.|||.++.|+.+||++|||+|++|+.|..+.|++..
T Consensus 196 pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~ 253 (343)
T TIGR01305 196 PQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGE 253 (343)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcce
Confidence 5788899999887655799999999999999999999999999999999999998764
No 20
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.80 E-value=4.9e-18 Score=155.77 Aligned_cols=193 Identities=19% Similarity=0.167 Sum_probs=142.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHh--cC
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILS--EK 87 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~--~~ 87 (332)
..|||.++|. .+.+.++|.++++.|+++++.- ..++|+..+.+++.+........|.+-+...+.+.++.+++ .+
T Consensus 46 giPii~AnMd-TV~~~~mA~~la~~g~~~~iHk--~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g 122 (346)
T PRK05096 46 GVPIIAANMD-TVGTFEMAKALASFDILTAVHK--HYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPA 122 (346)
T ss_pred CCceEecCCC-ccccHHHHHHHHHCCCeEEEec--CCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCC
Confidence 3899999998 7999999999999999999985 35888777777776642222233333333334567777887 48
Q ss_pred CcEEEEc--cCCCcH---HHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------Cchhh
Q 020013 88 VAVLQVS--WGEYSE---ELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLIS 153 (332)
Q Consensus 88 ~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ 153 (332)
+|+|.+. .|. .. +.++.+|+. +..|+ ..|.|.+.++.++++|+|+|.| |...|..+... .+.+.
T Consensus 123 ~D~iviD~AhGh-s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKV-GIGpGSiCtTr~vtGvG~PQlt 200 (346)
T PRK05096 123 LNFICIDVANGY-SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKV-GIGPGSVCTTRVKTGVGYPQLS 200 (346)
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEE-cccCCccccCccccccChhHHH
Confidence 9998873 343 44 445666653 44544 5788999999999999999987 33334433111 24466
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+.++.++....++|||+.|||.+..|+.++|++|||.|++|+-|..+.|||..
T Consensus 201 AV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe 254 (346)
T PRK05096 201 AVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGE 254 (346)
T ss_pred HHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCc
Confidence 666666655445799999999999999999999999999999999999999764
No 21
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.78 E-value=2.1e-17 Score=163.19 Aligned_cols=201 Identities=23% Similarity=0.376 Sum_probs=143.9
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC-------------------
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE------------------- 63 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~------------------- 63 (332)
+++.+++++||+++||. +++..+|+.+|+++|++|+|.. + .++++..+++++++...+
T Consensus 34 l~~~~~~~~Piv~a~m~-~vT~~ela~ava~~GglG~i~~-~-~~~e~~~~~I~~vk~~~dim~~~~v~i~~~~tv~ea~ 110 (486)
T PRK05567 34 LTKNIRLNIPLLSAAMD-TVTEARMAIAMAREGGIGVIHK-N-MSIEEQAEEVRKVKRSESGVVTDPVTVTPDTTLAEAL 110 (486)
T ss_pred hhhhcCcCcCEEeCCCC-CcCHHHHHHHHHhCCCCCEecC-C-CCHHHHHHHHHHhhhhhhcccCCCeEeCCCCCHHHHH
Confidence 67899999999999998 7999999999999999999985 3 578777777776553210
Q ss_pred ------------------CcEEE---------------------------------------------------------
Q 020013 64 ------------------RPFGV--------------------------------------------------------- 68 (332)
Q Consensus 64 ------------------~p~gv--------------------------------------------------------- 68 (332)
+++|+
T Consensus 111 ~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~ 190 (486)
T PRK05567 111 ALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGR 190 (486)
T ss_pred HHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 00000
Q ss_pred --Eeec----------C-------------------CCCHHHHHHHHhcCCcEEEEc--cCCC--cHHHHHHHHhC--CC
Q 020013 69 --GVVL----------A-------------------FPHNENIKAILSEKVAVLQVS--WGEY--SEELVLEAHSA--GV 111 (332)
Q Consensus 69 --nl~~----------~-------------------~~~~~~~~~~~~~~~~~I~~~--~g~~--~~~~i~~~~~~--g~ 111 (332)
+++. + ....+.++.+.+.+++++.+. .|.. ..+.++.+++. ++
T Consensus 191 lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~ 270 (486)
T PRK05567 191 LKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDV 270 (486)
T ss_pred EEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCC
Confidence 0000 0 001245566778888887664 1321 12345556553 55
Q ss_pred EE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC------CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 112 KV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ------DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 112 ~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~------~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
++ +..+.|.++++.+.++|+|+|.+ |...|....+. .+++..+.++.+.....++|||+.|||.++.++.++
T Consensus 271 ~vi~g~v~t~e~a~~l~~aGad~i~v-g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kA 349 (486)
T PRK05567 271 QIIAGNVATAEAARALIEAGADAVKV-GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKA 349 (486)
T ss_pred CEEEeccCCHHHHHHHHHcCCCEEEE-CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHH
Confidence 64 47889999999999999999987 33222111111 356778888887664447999999999999999999
Q ss_pred HHcCcceeeeccccccCccCCCC
Q 020013 185 LSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 185 l~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
|++|||.|++||.|..+.||+..
T Consensus 350 la~GA~~v~~G~~~a~~~e~pg~ 372 (486)
T PRK05567 350 LAAGASAVMLGSMLAGTEEAPGE 372 (486)
T ss_pred HHhCCCEEEECccccccccCCCc
Confidence 99999999999999999999864
No 22
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.78 E-value=4.2e-18 Score=160.38 Aligned_cols=191 Identities=25% Similarity=0.275 Sum_probs=135.9
Q ss_pred hhcC--CccceecCCCCCCCC------cHHHHHHHHhCC---CceeecCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeec
Q 020013 5 GMLG--FEYGIVQAPLGPDIS------GPELVAAVANAG---GLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVL 72 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s------~~~la~avs~aG---glG~i~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~ 72 (332)
++|| +++||+++||+ |.+ +++|+.+++++| ++|..... +.+++.... .+.+|+ .++.|+.+|+..
T Consensus 46 ~~~g~~l~~Pi~iaaMt-Gg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~-~~~~~~~~~-~~~vr~~~~~~p~i~nl~~ 122 (333)
T TIGR02151 46 EFLGKRLKAPFYINAMT-GGSEEAGKINRNLARAARELGIPMGVGSQRAA-LKDPETADT-FEVVREEAPNGPLIANIGA 122 (333)
T ss_pred EECCccccCCEEEeCCC-CCchhHHHHHHHHHHHHHHcCCCeEEcCchhh-ccChhhHhH-HHHHHHhCCCCcEEeecCc
Confidence 4455 78999999998 568 899999999999 77776653 567775444 477777 578999999987
Q ss_pred CCCC----HHHHHHHHhcCCcEEEEccCCC-----------cH---HHHHHHHhC-CCEEEEec----CCHHHHHHHHHc
Q 020013 73 AFPH----NENIKAILSEKVAVLQVSWGEY-----------SE---ELVLEAHSA-GVKVVPQV----GSFDEARKAVNA 129 (332)
Q Consensus 73 ~~~~----~~~~~~~~~~~~~~I~~~~g~~-----------~~---~~i~~~~~~-g~~v~~~v----~s~~~a~~a~~~ 129 (332)
.... ++..+.+...+++++.+|.+.. .. +.++.+++. +++|+.+. .+.+.++.+.++
T Consensus 123 ~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~a 202 (333)
T TIGR02151 123 PQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADA 202 (333)
T ss_pred hhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHc
Confidence 5431 1233333345788888775311 11 334555554 78877653 478999999999
Q ss_pred CCCEEEEecCCCCcccCC-------------------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 130 GVDAIIVQGREAGGHVIG-------------------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 130 g~D~ivv~G~eaGGh~~~-------------------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
|+|+|.+.|. ||+.+. ..++...++++++. ..++|||++|||.++.++.++|++|||
T Consensus 203 Gvd~I~Vsg~--gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd 278 (333)
T TIGR02151 203 GVSAIDVAGA--GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLRTGLDVAKAIALGAD 278 (333)
T ss_pred CCCEEEECCC--CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCC
Confidence 9999999874 554211 01123345555541 127999999999999999999999999
Q ss_pred eeeeccccccCc
Q 020013 191 GICLGTRFVASE 202 (332)
Q Consensus 191 gV~~GT~fl~t~ 202 (332)
+|++|+.|+..-
T Consensus 279 ~V~igr~~L~~~ 290 (333)
T TIGR02151 279 AVGMARPFLKAA 290 (333)
T ss_pred eehhhHHHHHHH
Confidence 999999998553
No 23
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.74 E-value=6.3e-17 Score=158.39 Aligned_cols=162 Identities=22% Similarity=0.274 Sum_probs=116.3
Q ss_pred HHHHHHHhcCCcEEEEc--cCC--CcHHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccC----
Q 020013 78 ENIKAILSEKVAVLQVS--WGE--YSEELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVI---- 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~--~~~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~---- 146 (332)
+.++.+.+.++++|.+. .|. ...+.++.+|+. ++.+++ .|.|.+.++.+.++|+|+|.+ |...|..+.
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~v-gig~gsictt~~~ 308 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKV-GVGPGAMCTTRMM 308 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEE-CccCCcccccccc
Confidence 34556677888888763 232 223567777764 678887 899999999999999999976 332233221
Q ss_pred --CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC-------CHHHHH-----
Q 020013 147 --GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA-------HPEYKR----- 212 (332)
Q Consensus 147 --~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~-------~~~~k~----- 212 (332)
-..+.+.++.++.++....++|||+.|||.++.++.++|++||++|++|+.|..|.||+. ...||+
T Consensus 309 ~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmg 388 (479)
T PRK07807 309 TGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMA 388 (479)
T ss_pred cCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccc
Confidence 113567788888775443479999999999999999999999999999999999999998 556666
Q ss_pred ---HHhcC--CCceEEEEecccCCCCCCceeecChHHH
Q 020013 213 ---KLVEM--DKTEYTDVFGRARWPGAPHRVLQTPFFS 245 (332)
Q Consensus 213 ---~~~~~--~~t~~t~~~~~~~~~g~~~R~l~n~~~~ 245 (332)
++.+. .++.++..+ .+++.|++.+.|..
T Consensus 389 s~~a~~~~~~~~~~~~~~~-----~~~~~eGv~~~~~~ 421 (479)
T PRK07807 389 SARAVAARTAGDSAFDRAR-----KALFEEGISTSRMY 421 (479)
T ss_pred cHHHHhcccCccchhhhcc-----cCCCCCCccceeee
Confidence 55432 222223222 36777888887643
No 24
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.73 E-value=2e-16 Score=147.02 Aligned_cols=189 Identities=20% Similarity=0.272 Sum_probs=139.4
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC--CCHHHHHHHHh
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENIKAILS 85 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~--~~~~~~~~~~~ 85 (332)
.+++|++..+|. ...+.+||....+.|+++++.- .++|......++.+ +..+-+|+-+.. .+.+.++.+++
T Consensus 35 ~l~~P~~inAM~-t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~~~r~~~---~~~l~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 35 TFKLPVVPANMQ-TIIDEKIAEWLAENGYFYIMHR---FDPEARIPFIKDMH---EQGLIASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred EecCcEEEeccc-chhHHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcc---ccccEEEEEecCCHHHHHHHHHHHh
Confidence 367899999997 5889999999999999999864 37776555554443 222345554433 23466778888
Q ss_pred cCC--cEEEEcc----CCCcHHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCccc------CCCCc
Q 020013 86 EKV--AVLQVSW----GEYSEELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHV------IGQDG 150 (332)
Q Consensus 86 ~~~--~~I~~~~----g~~~~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~------~~~~~ 150 (332)
+++ |+|.+.. +....++++.+++. +++|+. .|.|.++++.+.++|+|++.+-+. .|... +...+
T Consensus 108 ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~-~G~~~~t~~~~g~~~~ 186 (326)
T PRK05458 108 EGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIG-PGKVCITKIKTGFGTG 186 (326)
T ss_pred cCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCC-CCcccccccccCCCCC
Confidence 854 9998821 22234667777764 577887 599999999999999999887432 11110 01123
Q ss_pred --hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 151 --LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 151 --~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+..++++++.+ ++|||+.|||.++.|+.++|++||++|++|+.|+.+.||+..
T Consensus 187 ~w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~ 242 (326)
T PRK05458 187 GWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGK 242 (326)
T ss_pred ccHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCc
Confidence 344588888776 799999999999999999999999999999999999999764
No 25
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.72 E-value=3.7e-16 Score=139.94 Aligned_cols=173 Identities=17% Similarity=0.233 Sum_probs=127.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCC----------------------CHHHHHHHHHHHHhhcCCcEEEE
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWE----------------------APDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~----------------------~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
||++|||+ |+++.+|+.++++.+|+++++..+.. ..+.+++++..+++. +.|+++|
T Consensus 1 ~~~lApMa-g~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~-~~p~~vq 78 (233)
T cd02911 1 PVALASMA-GITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDS-NVLVGVN 78 (233)
T ss_pred CceeeecC-CCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhcc-CCeEEEE
Confidence 89999999 89999999999999999999653211 234455555655543 5799999
Q ss_pred eecCCCC--HHHHHHHHhcCCcEEEEccCCCcH-------------------HHHHHHHhCCCEEEEecC------CHHH
Q 020013 70 VVLAFPH--NENIKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQVG------SFDE 122 (332)
Q Consensus 70 l~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~~g~~v~~~v~------s~~~ 122 (332)
+..+.+. .+..+.+. ...+.|.+++|+|.. ++++.+++.+++|..++. +.+.
T Consensus 79 i~g~~~~~~~~aa~~~~-~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~l 157 (233)
T cd02911 79 VRSSSLEPLLNAAALVA-KNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEEL 157 (233)
T ss_pred ecCCCHHHHHHHHHHHh-hcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHH
Confidence 9987652 12223333 357999998887532 334556667888887763 3566
Q ss_pred HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 123 ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 123 a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
++.+.++|+|+|-+.+...|+ ...+..+++++ . ++|||+.|||.+++++.+++..|||+|++|+.
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~-----~ad~~~I~~i~--~---~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGN-----HADLKKIRDIS--T---ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCC-----CCcHHHHHHhc--C---CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 677889999988775443332 23467777765 3 79999999999999999999999999999998
No 26
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.72 E-value=7.8e-16 Score=150.63 Aligned_cols=129 Identities=26% Similarity=0.415 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCcEEEEcc--CC--CcHHHHHHHHhC--CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC--
Q 020013 78 ENIKAILSEKVAVLQVSW--GE--YSEELVLEAHSA--GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-- 148 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~--g~--~~~~~i~~~~~~--g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~-- 148 (332)
+.++.+.+.++++|.+.. |. ...+.++.+++. .++|+. .+.|.++++.+.++|+|+|.+ |...|+.+...
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~v-g~g~G~~~~t~~~ 305 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRV-GIGPGSICTTRIV 305 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEE-CCCCCcCCcccee
Confidence 456677888999988753 32 122456666654 566654 899999999999999999988 43334322111
Q ss_pred ----CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 149 ----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 149 ----~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+.+..++++.+.....++|||+.|||.++.++.++|++||+.|++||.|..|+||+..
T Consensus 306 ~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 306 AGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred cCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCc
Confidence 24567777777665444799999999999999999999999999999999999999764
No 27
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.69 E-value=2.6e-15 Score=139.11 Aligned_cols=190 Identities=22% Similarity=0.275 Sum_probs=138.1
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.+++|++..+|. ...+.+|+....+.|+++++.- .++|+..+.+++.+.. ..+.++++-....+.+.+..+++.+
T Consensus 32 ~l~~P~~inAM~-t~in~~LA~~a~~~G~~~i~hK---~~~E~~~sfvrk~k~~-~L~v~~SvG~t~e~~~r~~~lv~a~ 106 (321)
T TIGR01306 32 KFKLPVVPANMQ-TIIDEKLAEQLAENGYFYIMHR---FDEESRIPFIKDMQER-GLFASISVGVKACEYEFVTQLAEEA 106 (321)
T ss_pred EecCcEEeeccc-hhhhHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcccc-ccEEEEEcCCCHHHHHHHHHHHhcC
Confidence 467999999997 6889999999999999999864 3787766665555421 1233333333333346788888888
Q ss_pred --CcEEEEc--cCCCcH---HHHHHHHhC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccC-------C-CC
Q 020013 88 --VAVLQVS--WGEYSE---ELVLEAHSA--GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVI-------G-QD 149 (332)
Q Consensus 88 --~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-------~-~~ 149 (332)
+|+|.+. .|. .. +.++.+++. ...++.. +.+.+.++.+.++|+|+|.+. ...|+... + ..
T Consensus 107 ~~~d~i~~D~ahg~-s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~-~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 107 LTPEYITIDIAHGH-SNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG-IGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred CCCCEEEEeCccCc-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC-CCCCccccceeeeccCCCc
Confidence 6988763 243 34 345566653 3445544 899999999999999999974 22233210 1 11
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
..+..+.++++.. ++|||+.|||.++.|+.++|++|||+|++|+.|..|.|||..
T Consensus 185 ~~l~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~ 239 (321)
T TIGR01306 185 WQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGE 239 (321)
T ss_pred hHHHHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCc
Confidence 2345677777766 799999999999999999999999999999999999998764
No 28
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=99.69 E-value=2.9e-15 Score=142.80 Aligned_cols=218 Identities=24% Similarity=0.315 Sum_probs=161.3
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhc--CCcEEEEeecCCCC---
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPH--- 76 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~--- 76 (332)
.|++++| +.||+.++|.+..-+|++++|.+|||----+..+++.+++-+.+.++++-.+. ..-+.+|.++.+|+
T Consensus 27 kfsrLtG-r~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~ 105 (717)
T COG4981 27 KFSRLTG-RSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWK 105 (717)
T ss_pred chhhhcC-CCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhh
Confidence 3678899 67999999997666999999999999877777778899999999999887653 45688898876653
Q ss_pred -----HHHHHHHHhcC--CcEEEEccCCCcH----HHHHHHHhCCCEEE-EecCCHHHHHHHH---HcCCC---EEEEec
Q 020013 77 -----NENIKAILSEK--VAVLQVSWGEYSE----ELVLEAHSAGVKVV-PQVGSFDEARKAV---NAGVD---AIIVQG 138 (332)
Q Consensus 77 -----~~~~~~~~~~~--~~~I~~~~g~~~~----~~i~~~~~~g~~v~-~~v~s~~~a~~a~---~~g~D---~ivv~G 138 (332)
...++.+...| ++.|.++.|.|.. ++++.+.+.|++.+ .+.++++..+..+ ++.+. ++-++|
T Consensus 106 ~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 106 LQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred hcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 44566676665 5778888888654 45566666698866 4567877765543 33333 233478
Q ss_pred CCCCcccCCCCch-hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-----------cCcceeeeccccccCccCCC
Q 020013 139 REAGGHVIGQDGL-ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-----------LGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 139 ~eaGGh~~~~~~~-~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-----------~GA~gV~~GT~fl~t~Es~~ 206 (332)
-.+|||. +-... -.+|....+.....+|-+++.|||+++++.+.+|. +-.||+.+||+.|.++|+..
T Consensus 186 GraGGHH-SweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEatT 264 (717)
T COG4981 186 GRAGGHH-SWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEATT 264 (717)
T ss_pred CccCCcc-chhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhhccC
Confidence 8889986 32111 11222222211113799999999999999998884 56899999999999999999
Q ss_pred CHHHHHHHhcCCCce
Q 020013 207 HPEYKRKLVEMDKTE 221 (332)
Q Consensus 207 ~~~~k~~~~~~~~t~ 221 (332)
|+..|++|++.+.++
T Consensus 265 Sp~vK~~lv~t~Gvd 279 (717)
T COG4981 265 SPAVKEALVATQGVD 279 (717)
T ss_pred CHHHHHHHhhCCCCC
Confidence 999999999986654
No 29
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.67 E-value=4.3e-15 Score=139.90 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=139.4
Q ss_pred hhcC--CccceecCCCC---CCCCc--HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC--
Q 020013 5 GMLG--FEYGIVQAPLG---PDISG--PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-- 75 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~---~g~s~--~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-- 75 (332)
++|| +++||+-+||+ .+..+ ..++.+..++|...+++..+..+.|++. +.. ..+.|+-.++....+
T Consensus 57 ~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~---~~~--~~~~~~w~Qly~~~d~~ 131 (344)
T cd02922 57 TILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIV---DAR--PPDQPLFFQLYVNKDRT 131 (344)
T ss_pred EECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHH---Hhc--CCCCcEEEEEeecCCHH
Confidence 4565 67899999997 21222 2677777778876666654434444421 111 123566677765432
Q ss_pred -CHHHHHHHHhcCCcEEEEccCCC---------------------------------------------cHHHHHHHHh-
Q 020013 76 -HNENIKAILSEKVAVLQVSWGEY---------------------------------------------SEELVLEAHS- 108 (332)
Q Consensus 76 -~~~~~~~~~~~~~~~I~~~~g~~---------------------------------------------~~~~i~~~~~- 108 (332)
..+.++.+.+.|++++.++.+.+ ..+.++.+++
T Consensus 132 ~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 211 (344)
T cd02922 132 KTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKH 211 (344)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHh
Confidence 14556777788999887764321 0123444554
Q ss_pred CCCE-EEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHH
Q 020013 109 AGVK-VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 109 ~g~~-v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al 185 (332)
.+.+ ++..+.+.++++.+.+.|+|+|++.|.. |...+...+++..++++.+.++ ..++|||++|||.++.|+.++|
T Consensus 212 ~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kal 290 (344)
T cd02922 212 TKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKAL 290 (344)
T ss_pred cCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH
Confidence 3445 5567889999999999999999999864 2222233456667888877532 1269999999999999999999
Q ss_pred HcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 186 SLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 186 ~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
++||++|++||.|+...++...+...+.+..
T Consensus 291 aLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~ 321 (344)
T cd02922 291 CLGAKAVGLGRPFLYALSAYGEEGVEKAIQI 321 (344)
T ss_pred HcCCCEEEECHHHHHHHhhccHHHHHHHHHH
Confidence 9999999999999999887655555544443
No 30
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.65 E-value=1.3e-14 Score=129.27 Aligned_cols=164 Identities=20% Similarity=0.300 Sum_probs=124.4
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEE-E--------EeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG-V--------GVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~g-v--------nl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
.+++.++.++|+.++... ++ +.++++|+.++.|+- . +++. .+..++++.+.+.|+|+|.+..
T Consensus 26 ~~~a~a~~~~G~~~~~~~----~~----~~i~~i~~~~~~Pil~~~~~d~~~~~~~~-~~~~~~v~~a~~aGad~I~~d~ 96 (221)
T PRK01130 26 AAMALAAVQGGAVGIRAN----GV----EDIKAIRAVVDVPIIGIIKRDYPDSEVYI-TPTLKEVDALAAAGADIIALDA 96 (221)
T ss_pred HHHHHHHHHCCCeEEEcC----CH----HHHHHHHHhCCCCEEEEEecCCCCCCceE-CCCHHHHHHHHHcCCCEEEEeC
Confidence 567888888898888643 33 346677777788873 1 2433 2345678999999999888753
Q ss_pred C-------CCcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 96 G-------EYSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 96 g-------~~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
. ....++++.+++ .+++++..+++.++++.+.+.|+|++.+... +...+. .....+.+++++++.+
T Consensus 97 ~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~-~~~~~~~~i~~i~~~~--- 172 (221)
T PRK01130 97 TLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKK-PEEPDFALLKELLKAV--- 172 (221)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCC-CCCcCHHHHHHHHHhC---
Confidence 2 233578889999 8999999999999999999999999977422 111111 1123477888888876
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++||+++|||.+++++.+++++|||+|++||+|+..
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 799999999999999999999999999999998864
No 31
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.63 E-value=1.3e-14 Score=136.26 Aligned_cols=189 Identities=21% Similarity=0.313 Sum_probs=133.0
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHh-----hcCCcEEEEeecCCCC--HHH
Q 020013 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS-----LTERPFGVGVVLAFPH--NEN 79 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~-----~~~~p~gvnl~~~~~~--~~~ 79 (332)
+.+++|+++|||. ++|+..+...+.+.| .+++.++ +.+.+.+....++.+. ..+.|+.+++..+.+. .+.
T Consensus 4 ~~~~~~l~lAPm~-~~t~~~fR~l~~~~g-~~~~~te-mi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~a 80 (319)
T TIGR00737 4 IQLKSRVVLAPMA-GVTDSPFRRLVAEYG-AGLTVCE-MVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEA 80 (319)
T ss_pred ccCCCCEEecCCC-CCCcHHHHHHHHHHC-CCEEEEC-CEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHH
Confidence 3468999999998 799999999999988 5777654 3333332211111111 1257999999987762 223
Q ss_pred HHHHHhcCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC---------CHHHHHHHHHcC
Q 020013 80 IKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG---------SFDEARKAVNAG 130 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~---------s~~~a~~a~~~g 130 (332)
.+.+.+.|+|.|.+++|+|.. ++++.+++ .++++..++. ..+.++.+.+.|
T Consensus 81 a~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G 160 (319)
T TIGR00737 81 AKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG 160 (319)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC
Confidence 344556799999999887531 22333433 3677766552 234556778899
Q ss_pred CCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-HcCcceeeeccccccCcc
Q 020013 131 VDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVASEE 203 (332)
Q Consensus 131 ~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al-~~GA~gV~~GT~fl~t~E 203 (332)
+|+|.+.|... +++. + ...+..+.++++.+ ++||++.|||.+++++.+++ ..|||+|++|++++..+.
T Consensus 161 ~d~i~vh~r~~~~~~~-~-~~~~~~i~~i~~~~---~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~ 230 (319)
T TIGR00737 161 AQAVTLHGRTRAQGYS-G-EANWDIIARVKQAV---RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPW 230 (319)
T ss_pred CCEEEEEcccccccCC-C-chhHHHHHHHHHcC---CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCCh
Confidence 99999987532 2332 2 24578888888877 79999999999999999999 579999999999997654
No 32
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.62 E-value=2.4e-14 Score=134.26 Aligned_cols=189 Identities=18% Similarity=0.247 Sum_probs=130.3
Q ss_pred hcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHH--HHHHHHHHHHh---hcCCcEEEEeecCCCCHHH-
Q 020013 6 MLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPD--YLRDLIRKTRS---LTERPFGVGVVLAFPHNEN- 79 (332)
Q Consensus 6 ~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e--~~~~~i~~~r~---~~~~p~gvnl~~~~~~~~~- 79 (332)
.+.++.|+++|||. |+|+..+...+.+.|+ ++..++ +.+.+ .........+. ..+.|++++++.+.+ ++.
T Consensus 5 ~~~~~~~~~lAPM~-g~td~~fR~l~~~~g~-~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~-~~~~ 80 (321)
T PRK10415 5 QYQLRNRLIAAPMA-GITDRPFRTLCYEMGA-GLTVSE-MMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDP-KEMA 80 (321)
T ss_pred CccCCCCEEecCCC-CCCcHHHHHHHHHHCC-CEEEEc-cEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCH-HHHH
Confidence 45678899999998 8999999999988874 544332 22222 11111111111 123678899988766 333
Q ss_pred --HHHHHhcCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC---------CHHHHHHHHH
Q 020013 80 --IKAILSEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG---------SFDEARKAVN 128 (332)
Q Consensus 80 --~~~~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~---------s~~~a~~a~~ 128 (332)
.+.+.+.++|+|.+++|+|.. ++++.+++ .++++..++. ..+-++.+.+
T Consensus 81 ~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~ 160 (321)
T PRK10415 81 DAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED 160 (321)
T ss_pred HHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHH
Confidence 344456789999999998632 12233333 3566665441 2344566788
Q ss_pred cCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 129 AGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 129 ~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
.|+|.|.+.|.... .+. + ...+.++.++++.+ ++|||+.|||.+++++.+++. .|||+|++|++++..+.
T Consensus 161 ~G~d~i~vh~rt~~~~~~-G-~a~~~~i~~ik~~~---~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 161 CGIQALTIHGRTRACLFN-G-EAEYDSIRAVKQKV---SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 (321)
T ss_pred hCCCEEEEecCccccccC-C-CcChHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCCh
Confidence 99999999887532 222 2 24588899998887 799999999999999999997 69999999999998653
No 33
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.61 E-value=5e-14 Score=137.96 Aligned_cols=128 Identities=25% Similarity=0.303 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCcEEEEc--cCCCcH---HHHHHHHhC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccC---
Q 020013 78 ENIKAILSEKVAVLQVS--WGEYSE---ELVLEAHSA--GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVI--- 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~~~---~~i~~~~~~--g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~--- 146 (332)
+.++.+.+.++++|.+. .|. +. +.++.+|+. +++|+.. +.|.+.++.+.++|+|+|.+-+. .|..+.
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~g~-~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g-~Gs~~ttr~ 305 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAHGH-QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVG-PGAMCTTRM 305 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCCCC-cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCc-CCccccCcc
Confidence 45667778899998763 233 33 456677765 7888876 88999999999999999987221 111110
Q ss_pred --C-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 147 --G-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 147 --~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
+ ..+....+-++.++....++|||+.|||.++.|+.++|++||+.|++|+.|..|.|||..
T Consensus 306 ~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 306 MTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred ccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 0 113333344444333323799999999999999999999999999999999999999764
No 34
>PLN02535 glycolate oxidase
Probab=99.58 E-value=2.2e-13 Score=128.62 Aligned_cols=113 Identities=24% Similarity=0.352 Sum_probs=90.8
Q ss_pred HHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHS-AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~-~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+++ .+.+++ ..|.++++++.+.+.|+|+|++.|.+ |.+.+...+++..++++++.+.. ++|||++|||.++.|
T Consensus 215 i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~G-Gr~~d~~~~t~~~L~ev~~av~~-~ipVi~dGGIr~g~D 292 (364)
T PLN02535 215 IEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHG-ARQLDYSPATISVLEEVVQAVGG-RVPVLLDGGVRRGTD 292 (364)
T ss_pred HHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCC-cCCCCCChHHHHHHHHHHHHHhc-CCCEEeeCCCCCHHH
Confidence 344444 345554 55889999999999999999998874 22222234568889999887643 699999999999999
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhcC
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~~ 217 (332)
+.++|++||++|++|+.|+...++...+.+++.+...
T Consensus 293 v~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l 329 (364)
T PLN02535 293 VFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEML 329 (364)
T ss_pred HHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHH
Confidence 9999999999999999999998888888888887654
No 35
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.58 E-value=1.6e-13 Score=116.33 Aligned_cols=163 Identities=23% Similarity=0.369 Sum_probs=111.0
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeec---------CCCCHHHHHHHHhcCCcEEEEccC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVL---------AFPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~---------~~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
.||.++...|..|+=. .+++. ++.+|+.++.|+- +++- -.|..+.++.+.+.|+|+|.+..-
T Consensus 3 ~mA~Aa~~gGA~giR~----~~~~d----I~aik~~v~lPII-Gi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT 73 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRA----NGVED----IRAIKKAVDLPII-GIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDAT 73 (192)
T ss_dssp HHHHHHHHCT-SEEEE----ESHHH----HHHHHTTB-S-EE-EE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-S
T ss_pred HHHHHHHHCCceEEEc----CCHHH----HHHHHHhcCCCEE-EEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecC
Confidence 5677776666666532 25655 6677777788742 2221 123467788899999999988632
Q ss_pred C-----CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEE--ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE
Q 020013 97 E-----YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIV--QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 97 ~-----~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv 169 (332)
. ...++++.+|+.+..++..|+|.+|++.+.++|+|+|-- .|+.. .+.+..+.+.|+.++++. ++||
T Consensus 74 ~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~--~t~~~~pD~~lv~~l~~~----~~pv 147 (192)
T PF04131_consen 74 DRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTP--YTKGDGPDFELVRELVQA----DVPV 147 (192)
T ss_dssp SSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSST--TSTTSSHHHHHHHHHHHT----TSEE
T ss_pred CCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCC--CCCCCCCCHHHHHHHHhC----CCcE
Confidence 1 234788899999999999999999999999999999965 23311 111234679999998874 6999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|+-|+|++++++.++|.+||++|++||++-..++
T Consensus 148 IaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~ 181 (192)
T PF04131_consen 148 IAEGRIHTPEQAAKALELGAHAVVVGSAITRPQE 181 (192)
T ss_dssp EEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHH
T ss_pred eecCCCCCHHHHHHHHhcCCeEEEECcccCCHHH
Confidence 9999999999999999999999999999765543
No 36
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.57 E-value=4.3e-14 Score=131.03 Aligned_cols=130 Identities=24% Similarity=0.375 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCcEEEEc--cCC--CcHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC-
Q 020013 77 NENIKAILSEKVAVLQVS--WGE--YSEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ- 148 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~--~g~--~~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~- 148 (332)
...++.+.+.++|+|.+. .|. +..+.++.+++. ...|+ ..|-+.+.++....+|+|++-+ |...|.++..+
T Consensus 253 K~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrV-GMGsGSiCiTqe 331 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRV-GMGSGSICITQK 331 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEe-ccccCceeeece
Confidence 345677888999999884 343 223567777764 45555 4677889999999999999987 55555543111
Q ss_pred -----CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 149 -----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 149 -----~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
.+-...+-++.+...+.++|||+.|||.+..++.++|.+||+.|+||+-+..+.|++..
T Consensus 332 vma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGe 395 (503)
T KOG2550|consen 332 VMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGE 395 (503)
T ss_pred eeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcc
Confidence 11122344444443334899999999999999999999999999999999999999863
No 37
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.56 E-value=4.8e-13 Score=124.41 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=128.9
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C--------------------CHHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E--------------------APDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~--------------------~~e~~~~~i~~~r~ 60 (332)
++.||+.+.= ..++.+........|++|++..++. . .++...+.+...+.
T Consensus 9 ~~nP~~~aag--~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~ 86 (296)
T cd04740 9 LKNPVILASG--TFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLR 86 (296)
T ss_pred cCCCCEECCC--CCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhh
Confidence 6679998742 2346667777778888888854321 0 01333344444444
Q ss_pred hcCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc---------------HHHHHHHHhC-CCEEEEecC----
Q 020013 61 LTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQVG---- 118 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~---------------~~~i~~~~~~-g~~v~~~v~---- 118 (332)
..+.|+++|+...... .+..+.+.+.|+|.|.+++++|. .++++.+++. +++|+.+++
T Consensus 87 ~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~ 166 (296)
T cd04740 87 EFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVT 166 (296)
T ss_pred cCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCch
Confidence 4578999999876531 23345556678999999876431 1456677766 788887765
Q ss_pred -CHHHHHHHHHcCCCEEEEecCCCC-----------------cccCCC---CchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 119 -SFDEARKAVNAGVDAIIVQGREAG-----------------GHVIGQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 119 -s~~~a~~a~~~g~D~ivv~G~eaG-----------------Gh~~~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
..+.++.+.+.|+|+|++.+...| |.. ++ ...+.++.++++.+ ++|||+.|||.+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~~~~~~~i~~i~~~~---~ipii~~GGI~~ 242 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLS-GPAIKPIALRMVYQVYKAV---EIPIIGVGGIAS 242 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceec-CcccchHHHHHHHHHHHhc---CCCEEEECCCCC
Confidence 124466788899999998654322 221 11 11356777877776 799999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++++.+++.+|||+|++||+++..
T Consensus 243 ~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 243 GEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred HHHHHHHHHcCCCEEEEchhhhcC
Confidence 999999999999999999999984
No 38
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.55 E-value=3.9e-13 Score=126.72 Aligned_cols=99 Identities=25% Similarity=0.398 Sum_probs=81.2
Q ss_pred HHHHHHHh-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHS-AGVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+.++.+++ .+.+|+.+ +.++++++.+.+.|+|+|+++|. ||+. ++...++..++++++++.. ++|||++|||.+
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnh--GGr~ld~~~~~~~~l~~i~~a~~~-~i~vi~dGGIr~ 287 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNH--GGRQLDGGPASFDSLPEIAEAVNH-RVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCC--CCccCCCCchHHHHHHHHHHHhCC-CCeEEEECCCCC
Confidence 34455554 46777766 88999999999999999999886 4554 2334568889999888743 699999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccCc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.|+.++|++||++|++|+.|+..-
T Consensus 288 g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 288 GEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHH
Confidence 9999999999999999999999764
No 39
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.55 E-value=2.3e-13 Score=119.93 Aligned_cols=171 Identities=16% Similarity=0.253 Sum_probs=133.0
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhhc----CCcEEEEeecCCCCHHHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSLT----ERPFGVGVVLAFPHNENIKA 82 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~~----~~p~gvnl~~~~~~~~~~~~ 82 (332)
+.|++ |.- ...+++.+..++++ ||+.++.. .+.+++. .+.++++++.. +..+|++-+.+ .++++.
T Consensus 12 ~~~vi--~vi-r~~~~~~a~~~~~al~~~Gi~~iEi-t~~~~~a-~~~i~~l~~~~~~~p~~~vGaGTV~~---~~~~~~ 83 (213)
T PRK06552 12 ANGVV--AVV-RGESKEEALKISLAVIKGGIKAIEV-TYTNPFA-SEVIKELVELYKDDPEVLIGAGTVLD---AVTARL 83 (213)
T ss_pred HCCEE--EEE-ECCCHHHHHHHHHHHHHCCCCEEEE-ECCCccH-HHHHHHHHHHcCCCCCeEEeeeeCCC---HHHHHH
Confidence 45666 553 35677776666654 89999977 4667764 45566666543 24578877764 678999
Q ss_pred HHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHh
Q 020013 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
+.+.|++++... + ..+++++.+++.++++++.+.|+.|+..+.+.|+|+|.+...+.. + ...++.++..+
T Consensus 84 a~~aGA~FivsP-~-~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~-------G-~~~ik~l~~~~ 153 (213)
T PRK06552 84 AILAGAQFIVSP-S-FNRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTL-------G-PSFIKAIKGPL 153 (213)
T ss_pred HHHcCCCEEECC-C-CCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccC-------C-HHHHHHHhhhC
Confidence 999999999877 3 367899999999999999999999999999999999998432211 1 45567776666
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+ ++|+++.||| +.+|+.+++++|++++.+||.++..
T Consensus 154 p--~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 154 P--QVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred C--CCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHhCc
Confidence 3 5999999999 8999999999999999999999754
No 40
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.54 E-value=4.6e-13 Score=126.30 Aligned_cols=111 Identities=28% Similarity=0.323 Sum_probs=88.1
Q ss_pred HHHHh-CCCEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 104 LEAHS-AGVKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 104 ~~~~~-~g~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
+.+++ .+.+| +..|.+.++++.+.+.|+|+|++.|.++ .+.+...+++..++++++.+.. ++|||++|||.++.|+
T Consensus 217 ~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-rqld~~~~t~~~L~ei~~av~~-~~~vi~dGGIr~G~Dv 294 (367)
T PLN02493 217 QWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-RQLDYVPATISALEEVVKATQG-RIPVFLDGGVRRGTDV 294 (367)
T ss_pred HHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCC-CCCCCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHHH
Confidence 44444 34554 4668899999999999999999988842 2333334678999999887743 6999999999999999
Q ss_pred HHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 182 VAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
.++|++||++|.+|+.|+..-++...+...+.+..
T Consensus 295 ~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~ 329 (367)
T PLN02493 295 FKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 329 (367)
T ss_pred HHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999988887777765554443
No 41
>PLN02979 glycolate oxidase
Probab=99.54 E-value=6.4e-13 Score=124.41 Aligned_cols=112 Identities=28% Similarity=0.308 Sum_probs=88.6
Q ss_pred HHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHS-AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~-~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+++ .+++++ ..|.+.++|+++.+.|+|+|++.|.++... +...+++..++++++.+.. ++|||++|||.++.|
T Consensus 215 l~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql-d~~p~t~~~L~ei~~~~~~-~~~Vi~dGGIr~G~D 292 (366)
T PLN02979 215 VQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL-DYVPATISALEEVVKATQG-RIPVFLDGGVRRGTD 292 (366)
T ss_pred HHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC-CCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHH
Confidence 445554 355554 668899999999999999999988843332 2234678899999887643 699999999999999
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+.++|++||++|.+|+.|+..-+...++...+.+..
T Consensus 293 i~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~ 328 (366)
T PLN02979 293 VFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQM 328 (366)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999988877777765555444
No 42
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.54 E-value=5.2e-13 Score=117.33 Aligned_cols=180 Identities=21% Similarity=0.277 Sum_probs=133.8
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHh---CCCceeecCCCCCCHHHHHHHHHHHHhhc--CCcEEEEeecCCC
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVAN---AGGLGLLRAPDWEAPDYLRDLIRKTRSLT--ERPFGVGVVLAFP 75 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~---aGglG~i~~~~~~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~ 75 (332)
|.+...|. +.|++ |.- ...+++.+..+++ .||+.++.. ++.+++.. +.++.+++.. +..+|++-++.
T Consensus 1 ~~~~~~l~-~~~~~--~v~-r~~~~~~~~~~~~a~~~gGi~~iEv-t~~~~~~~-~~i~~l~~~~~~~~~iGaGTV~~-- 72 (206)
T PRK09140 1 MRLMQPFT-KLPLI--AIL-RGITPDEALAHVGALIEAGFRAIEI-PLNSPDPF-DSIAALVKALGDRALIGAGTVLS-- 72 (206)
T ss_pred CchhhHHH-hCCEE--EEE-eCCCHHHHHHHHHHHHHCCCCEEEE-eCCCccHH-HHHHHHHHHcCCCcEEeEEecCC--
Confidence 55665554 45555 443 2445555555554 488999987 45666543 4566665433 24577776664
Q ss_pred CHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 76 HNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
.+.++.+.+.|++++++.. ...++.+..+..++.+++.+.|++|+..+.+.|+|+|.+... .. .....+
T Consensus 73 -~~~~~~a~~aGA~fivsp~--~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa-------~~-~G~~~l 141 (206)
T PRK09140 73 -PEQVDRLADAGGRLIVTPN--TDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPA-------SQ-LGPAGI 141 (206)
T ss_pred -HHHHHHHHHcCCCEEECCC--CCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCC-------CC-CCHHHH
Confidence 6789999999999999873 356788989999999999999999999999999999987321 11 125567
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.++..++. ++|+++.||| +.+|+.+++++||++|.+||.++..
T Consensus 142 ~~l~~~~~~-~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 142 KALRAVLPP-DVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred HHHHhhcCC-CCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccc
Confidence 777665521 4999999999 9999999999999999999999764
No 43
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.53 E-value=6.5e-13 Score=116.82 Aligned_cols=170 Identities=25% Similarity=0.320 Sum_probs=119.9
Q ss_pred CCCcHHHHHHHHhCC--CceeecCCCCCCHHHH-HHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC
Q 020013 21 DISGPELVAAVANAG--GLGLLRAPDWEAPDYL-RDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~~~~~~~e~~-~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
|+++++.+..+.++| .+|++... .++..+ .+..+++++... .+..|.+++++..++..+.+.+.++|+|++|..
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~--~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAP--KSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCC--CCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 688999999898887 48888642 133333 333444444332 246788888876566677888899999999954
Q ss_pred CCcHHHHHHHHh-CCCEEE--EecCCHHHH--HHHHHcCCCEEEEecCCC---CcccCCCCchhhhHHHHHHHhCCCCCc
Q 020013 97 EYSEELVLEAHS-AGVKVV--PQVGSFDEA--RKAVNAGVDAIIVQGREA---GGHVIGQDGLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 97 ~~~~~~i~~~~~-~g~~v~--~~v~s~~~a--~~a~~~g~D~ivv~G~ea---GGh~~~~~~~~~ll~~i~~~~~~~~iP 168 (332)
.+.+.++.+++ .+.+++ ..+++..+. ..+...++|++++..... ||+ +....|.+++++. . ++|
T Consensus 83 -e~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~--g~~~~~~~l~~~~--~---~~P 154 (203)
T cd00405 83 -ESPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGT--GKTFDWSLLRGLA--S---RKP 154 (203)
T ss_pred -CCHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCC--cceEChHHhhccc--c---CCC
Confidence 45667777775 355666 444444333 345667999999966433 232 3445678887765 3 689
Q ss_pred EEeecCcCCHHHHHHHHHcC-cceeeeccccccC
Q 020013 169 IIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 201 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t 201 (332)
++++||| +++|+.+++..| ++||.+.|.+...
T Consensus 155 vilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 155 VILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred EEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 9999999 999999999999 9999999998865
No 44
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.53 E-value=1.1e-12 Score=116.64 Aligned_cols=173 Identities=17% Similarity=0.201 Sum_probs=122.0
Q ss_pred CCCCCCcHHHHHHHHhCCCceeecCCCC--------------------C----CHHHHHHHHHHHHhhcCCcEEEEeecC
Q 020013 18 LGPDISGPELVAAVANAGGLGLLRAPDW--------------------E----APDYLRDLIRKTRSLTERPFGVGVVLA 73 (332)
Q Consensus 18 M~~g~s~~~la~avs~aGglG~i~~~~~--------------------~----~~e~~~~~i~~~r~~~~~p~gvnl~~~ 73 (332)
|+ |+++.+++......-|+-+|+..+. . ..+.+.+++.++++ +.|+.+|+-..
T Consensus 1 ma-g~~d~~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~--~~~vivnv~~~ 77 (231)
T TIGR00736 1 MA-GITDAEFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAES--RALVSVNVRFV 77 (231)
T ss_pred CC-CcchHHHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhh--cCCEEEEEecC
Confidence 66 6888888887655445555543211 0 12345566666653 56899998876
Q ss_pred CCCHHHHHH--HHhcCCcEEEEccCCCcH-------------------HHHHHHHhCCCEEEEecC-------CHHHHHH
Q 020013 74 FPHNENIKA--ILSEKVAVLQVSWGEYSE-------------------ELVLEAHSAGVKVVPQVG-------SFDEARK 125 (332)
Q Consensus 74 ~~~~~~~~~--~~~~~~~~I~~~~g~~~~-------------------~~i~~~~~~g~~v~~~v~-------s~~~a~~ 125 (332)
.+ ++..+. .++.++++|.+++|+|.+ ++++.+++.+++|..++. +++.++.
T Consensus 78 ~~-ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 78 DL-EEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred CH-HHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHH
Confidence 55 333332 344589999999887542 234555666888887654 2356778
Q ss_pred HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 126 a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++++|+|+|.++....|+ ....|..++++++.++ ++|||+.|||.+.+++.+++..|||+|++|++.+.
T Consensus 157 l~~aGad~i~Vd~~~~g~----~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPGK----PYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHcCCCEEEEeeCCCCC----chhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 899999999997543221 1246899999998872 49999999999999999999999999999998774
No 45
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.51 E-value=4.6e-13 Score=124.90 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=129.9
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHH-------HHHHHHHHHH----hhcCCcEEEEeecCCCC--HH
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPD-------YLRDLIRKTR----SLTERPFGVGVVLAFPH--NE 78 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e-------~~~~~i~~~r----~~~~~p~gvnl~~~~~~--~~ 78 (332)
|++.|||+ |+|+..+...+.+.|+.++..++ +.+.+ ....+...+. ...+.|+.++++.+.+. .+
T Consensus 2 ~~~lAPMa-g~td~~fR~l~~~~g~~~~~~te-mvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~ 79 (312)
T PRK10550 2 RVLLAPME-GVLDSLVRELLTEVNDYDLCITE-FLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAE 79 (312)
T ss_pred CeEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHH
Confidence 78999998 89999999998888877777654 33321 1111112221 12347999999998763 12
Q ss_pred HHHHHHhcCCcEEEEccCCCcHH-------------------HHHHHHhC---CCEEEEecC----C----HHHHHHHHH
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEE-------------------LVLEAHSA---GVKVVPQVG----S----FDEARKAVN 128 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~-------------------~i~~~~~~---g~~v~~~v~----s----~~~a~~a~~ 128 (332)
....+.+.+.|.|.+++|+|.+. +++.+++. +++|..++. + .+-++.+.+
T Consensus 80 aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~ 159 (312)
T PRK10550 80 NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ 159 (312)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh
Confidence 23455667999999998886432 23333432 367776642 1 234556778
Q ss_pred cCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 129 AGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 129 ~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
+|+|+|.+.+.... |.. ++...|..+.++++.+ ++|||+.|||.|++++.+++. .|||+|++|+.++..+.
T Consensus 160 ~Gvd~i~Vh~Rt~~~~y~-g~~~~~~~i~~ik~~~---~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~ 232 (312)
T PRK10550 160 AGATELVVHGRTKEDGYR-AEHINWQAIGEIRQRL---TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPN 232 (312)
T ss_pred cCCCEEEECCCCCccCCC-CCcccHHHHHHHHhhc---CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcH
Confidence 99999999876432 222 2223578888998887 799999999999999999995 78999999999998753
No 46
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.50 E-value=2.8e-12 Score=114.10 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCCcEEEEccC-------CCcHHHHHHHHhCC-CEEEEecCCHHHHHHHHHcCCCEEEEe--cCCCCcccC
Q 020013 77 NENIKAILSEKVAVLQVSWG-------EYSEELVLEAHSAG-VKVVPQVGSFDEARKAVNAGVDAIIVQ--GREAGGHVI 146 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g-------~~~~~~i~~~~~~g-~~v~~~v~s~~~a~~a~~~g~D~ivv~--G~eaGGh~~ 146 (332)
.++++.+.+.|+++|.+... ....++++.+++.+ +++++.+.+++++..+.+.|+|++.+. |.....+.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~- 160 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAK- 160 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccC-
Confidence 45788999999999887422 13457888888887 899999999999999999999999764 22221121
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.....+.+++++++.+ ++||++.|||.+++++.+++.+|||+|++||+|+....
T Consensus 161 ~~~~~~~~l~~i~~~~---~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 161 TEDPDFELLKELRKAL---GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEH 214 (219)
T ss_pred CCCCCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHh
Confidence 1223577888888876 79999999999999999999999999999999876543
No 47
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.50 E-value=2.1e-12 Score=122.76 Aligned_cols=97 Identities=27% Similarity=0.472 Sum_probs=79.4
Q ss_pred HHHHHHhC-CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA-GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~-g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
.++.+++. +.+++ ..|.+.++++.+.+.|+|+|+++|. ||+. ++..+++..|+++++.+.. ++|||++|||.++
T Consensus 244 ~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnh--GGr~~d~~~~t~~~L~ei~~~~~~-~~~vi~dGGIr~G 320 (383)
T cd03332 244 DLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNH--GGRQVDGSIAALDALPEIVEAVGD-RLTVLFDSGVRTG 320 (383)
T ss_pred HHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCC--CCcCCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCcCcH
Confidence 34455543 55555 5599999999999999999999876 4443 2345778899999988753 5999999999999
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|+.++|++||++|.+|+.|+..
T Consensus 321 ~Dv~KALaLGA~~v~iGr~~l~~ 343 (383)
T cd03332 321 ADIMKALALGAKAVLIGRPYAYG 343 (383)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHH
Confidence 99999999999999999999954
No 48
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.49 E-value=2e-12 Score=122.75 Aligned_cols=110 Identities=28% Similarity=0.400 Sum_probs=86.3
Q ss_pred HHHHHh--CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 103 VLEAHS--AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 103 i~~~~~--~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
++.+++ .+..++..|.+.++++.+.+.|+|+|+++|. ||+.. +..++...++++++.+.. ++|||++|||.++.
T Consensus 237 i~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~h--GGr~~d~~~~t~~~L~~i~~a~~~-~~~vi~dGGIr~g~ 313 (381)
T PRK11197 237 LEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNH--GGRQLDGVLSSARALPAIADAVKG-DITILADSGIRNGL 313 (381)
T ss_pred HHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCC--CCCCCCCcccHHHHHHHHHHHhcC-CCeEEeeCCcCcHH
Confidence 444444 2455667899999999999999999999875 66542 234678889998887642 69999999999999
Q ss_pred HHHHHHHcCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 180 GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
|+.++|++||++|.+|+.|+..-.+...+...+.+.
T Consensus 314 Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~ 349 (381)
T PRK11197 314 DVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLD 349 (381)
T ss_pred HHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999998765554444444444
No 49
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=99.49 E-value=1.6e-12 Score=113.31 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=132.0
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHh
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS 85 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~ 85 (332)
+.|++ |.- ...+++.+..++++ ||+.++.. .+.+++. .+.++++++. .+..+|++-+.+ .+.++.+.+
T Consensus 7 ~~~li--aVl-r~~~~e~a~~~~~al~~~Gi~~iEi-t~~t~~a-~~~i~~l~~~~~~~~vGAGTVl~---~~~a~~a~~ 78 (204)
T TIGR01182 7 EAKIV--PVI-RIDDVDDALPLAKALIEGGLRVLEV-TLRTPVA-LDAIRLLRKEVPDALIGAGTVLN---PEQLRQAVD 78 (204)
T ss_pred hCCEE--EEE-ecCCHHHHHHHHHHHHHcCCCEEEE-eCCCccH-HHHHHHHHHHCCCCEEEEEeCCC---HHHHHHHHH
Confidence 34555 443 35566666666654 88999976 3667665 4456666643 356688887764 678999999
Q ss_pred cCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 86 EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
.|++++... + ..+++++.+++.|+++++.+.|+.|+..+.+.|+|.|.+...+..| | ..+++.++.-++
T Consensus 79 aGA~FivsP-~-~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~G---G----~~yikal~~plp-- 147 (204)
T TIGR01182 79 AGAQFIVSP-G-LTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSG---G----VKMLKALAGPFP-- 147 (204)
T ss_pred cCCCEEECC-C-CCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcC---C----HHHHHHHhccCC--
Confidence 999999776 3 3678999999999999999999999999999999999996543221 1 235666665554
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++|+++.||| +.+|+.+++++|+.+|.+||.++.
T Consensus 148 ~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 148 QVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred CCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcC
Confidence 7999999999 899999999999999999999874
No 50
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.48 E-value=4.3e-12 Score=118.27 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------------------------CC--CHHHHHHHHHHHH
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------WE--APDYLRDLIRKTR 59 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~~--~~e~~~~~i~~~r 59 (332)
.++.||+.+|+..+. +.+....+.+. |+|++..++ +. ..+...+.+...+
T Consensus 9 ~l~npi~~aag~~~~-~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~ 86 (300)
T TIGR01037 9 RFKNPLILASGIMGS-GVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVR 86 (300)
T ss_pred ECCCCCEeCCcCCCC-CHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHh
Confidence 367899999953244 55666667776 467765421 00 1223333333333
Q ss_pred hhcCCcEEEEeecCCCCHHH---HHHHHhc--CCcEEEEccCCCc---------------HHHHHHHHhC-CCEEEEecC
Q 020013 60 SLTERPFGVGVVLAFPHNEN---IKAILSE--KVAVLQVSWGEYS---------------EELVLEAHSA-GVKVVPQVG 118 (332)
Q Consensus 60 ~~~~~p~gvnl~~~~~~~~~---~~~~~~~--~~~~I~~~~g~~~---------------~~~i~~~~~~-g~~v~~~v~ 118 (332)
...+.|+.+++....+ ++. .+.+.+. ++|+|.+++++|. .++++.+++. +++|+.++.
T Consensus 87 ~~~~~pl~~qi~g~~~-~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 87 EEFPTPLIASVYGSSV-EEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred ccCCCcEEEEeecCCH-HHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 3235689999987654 333 3334333 3899999877642 2455666654 788888776
Q ss_pred -CH----HHHHHHHHcCCCEEEEecCCC-----------------CcccCCCC---chhhhHHHHHHHhCCCCCcEEeec
Q 020013 119 -SF----DEARKAVNAGVDAIIVQGREA-----------------GGHVIGQD---GLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 119 -s~----~~a~~a~~~g~D~ivv~G~ea-----------------GGh~~~~~---~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+. +.++.+.++|+|+|++.+.-. ||.. ++. ..+..+.++++.+ ++|||+.|
T Consensus 166 ~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~s-g~~~~~~~l~~v~~i~~~~---~ipvi~~G 241 (300)
T TIGR01037 166 PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLS-GPAIKPIALRMVYDVYKMV---DIPIIGVG 241 (300)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCcccc-chhhhHHHHHHHHHHHhcC---CCCEEEEC
Confidence 33 345667889999999865321 2221 111 1246677777766 79999999
Q ss_pred CcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 174 GIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 174 GI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
||.+++++.+++..|||+|++||+++...+ .-...++.+.
T Consensus 242 GI~s~~da~~~l~~GAd~V~igr~~l~~p~--~~~~i~~~l~ 281 (300)
T TIGR01037 242 GITSFEDALEFLMAGASAVQVGTAVYYRGF--AFKKIIEGLI 281 (300)
T ss_pred CCCCHHHHHHHHHcCCCceeecHHHhcCch--HHHHHHHHHH
Confidence 999999999999999999999999998762 3333444443
No 51
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.47 E-value=3.9e-12 Score=114.30 Aligned_cols=187 Identities=18% Similarity=0.247 Sum_probs=133.4
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+++++.+.-..+||..+++...+ ..+|+ .|+++++..+.|+-- ++- ..+...++.+.+.|
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~----~I~~Ik~~V~iPVIG-i~K-~~~~~Ea~~L~eaG 87 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPK----MIKEIMDAVSIPVMA-KVR-IGHFVEAQILEALG 87 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHH----HHHHHHHhCCCCeEE-eee-hhHHHHHHHHHHcC
Confidence 478999999888999999997532 12333 466666666777532 111 11245577888999
Q ss_pred CcEEEEccC-CCcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcc---------------------
Q 020013 88 VAVLQVSWG-EYSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH--------------------- 144 (332)
Q Consensus 88 ~~~I~~~~g-~~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh--------------------- 144 (332)
+|+|.-+.- .|..+++..+|. .+.++++.++|.+|++++.+.|+|.|-..+....|.
T Consensus 88 vDiIDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 88 VDMIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred CCEEeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 999964311 123467777776 489999999999999999999999998765422222
Q ss_pred --------cCCCCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHH
Q 020013 145 --------VIGQDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRK 213 (332)
Q Consensus 145 --------~~~~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~ 213 (332)
.......+.+|.++++.. ++||+ +.|||.+++++..++.+||++|.+||+++.++... ....++++
T Consensus 168 t~~t~~~~~~~~~~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~a 244 (283)
T cd04727 168 SEEELYAVAKEIQAPYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEA 244 (283)
T ss_pred CHHHHHhhhcccCCCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHH
Confidence 000124578888888876 79997 99999999999999999999999999999654321 23445555
Q ss_pred Hhc
Q 020013 214 LVE 216 (332)
Q Consensus 214 ~~~ 216 (332)
+.+
T Consensus 245 i~~ 247 (283)
T cd04727 245 VTH 247 (283)
T ss_pred HHh
Confidence 544
No 52
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.47 E-value=4.2e-12 Score=117.64 Aligned_cols=191 Identities=19% Similarity=0.192 Sum_probs=129.9
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-----------------------------------C--CCHHH
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-----------------------------------W--EAPDY 50 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-----------------------------------~--~~~e~ 50 (332)
.++.||+.+... ...+.++.....++| +|++..++ + ..++.
T Consensus 7 ~~~nPv~~aag~-~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~ 84 (289)
T cd02810 7 KLKNPFGVAAGP-LLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDV 84 (289)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHH
Confidence 367899988875 346888888887765 45542211 0 11344
Q ss_pred HHHHHHHHHhh-cCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc--------------HHHHHHHHhC-CCE
Q 020013 51 LRDLIRKTRSL-TERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS--------------EELVLEAHSA-GVK 112 (332)
Q Consensus 51 ~~~~i~~~r~~-~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~--------------~~~i~~~~~~-g~~ 112 (332)
+.+.+...+.. .+.|+.+|+....+. .+.++.+.+.++|+|.+++++|. .++++.+++. +++
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~p 164 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIP 164 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCC
Confidence 55555555554 578999999876431 23455666779999999877541 1356666664 677
Q ss_pred EEEecC---C----HHHHHHHHHcCCCEEEEecCCCCc--------------ccC--CC---CchhhhHHHHHHHhCCCC
Q 020013 113 VVPQVG---S----FDEARKAVNAGVDAIIVQGREAGG--------------HVI--GQ---DGLISLLPMVVDLIGDRD 166 (332)
Q Consensus 113 v~~~v~---s----~~~a~~a~~~g~D~ivv~G~eaGG--------------h~~--~~---~~~~~ll~~i~~~~~~~~ 166 (332)
++.++. + .+.++.+.++|+|+|++.+...+. +.+ +. ...+..+.++++.++. +
T Consensus 165 v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~-~ 243 (289)
T cd02810 165 LLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQL-D 243 (289)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCC-C
Confidence 877654 3 344666788999999997653221 110 11 1135567777776531 5
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+|||+.|||.+++++.+++.+|||+|++||+++..
T Consensus 244 ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 244 IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhc
Confidence 99999999999999999999999999999999975
No 53
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.46 E-value=4.2e-12 Score=110.07 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=116.3
Q ss_pred CCcHHHHHHHHh---CCCceeecCCCCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 22 ISGPELVAAVAN---AGGLGLLRAPDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 22 ~s~~~la~avs~---aGglG~i~~~~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
..+++.+..+.+ .||+.++.. +..++.. .+.++.+++... ...+.+.++. .+.++.+.+.++++|++..
T Consensus 20 ~~~~~~~~~~~~~~~~~Gv~~vql-r~k~~~~-~e~~~~~~~~~~~~~~g~gtvl~---~d~~~~A~~~gAdgv~~p~-- 92 (187)
T PRK07455 20 APDLELGLQMAEAVAAGGMRLIEI-TWNSDQP-AELISQLREKLPECIIGTGTILT---LEDLEEAIAAGAQFCFTPH-- 92 (187)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE-eCCCCCH-HHHHHHHHHhCCCcEEeEEEEEc---HHHHHHHHHcCCCEEECCC--
Confidence 445555444443 377898876 3444432 344555554322 2245555543 5789999999999998863
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
...+..+..+..++..++.++|+.|+.++.+.|+|+|.+... ........++.++..++ ++|+++.||| +
T Consensus 93 ~~~~~~~~~~~~~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt-------~~~~G~~~l~~~~~~~~--~ipvvaiGGI-~ 162 (187)
T PRK07455 93 VDPELIEAAVAQDIPIIPGALTPTEIVTAWQAGASCVKVFPV-------QAVGGADYIKSLQGPLG--HIPLIPTGGV-T 162 (187)
T ss_pred CCHHHHHHHHHcCCCEEcCcCCHHHHHHHHHCCCCEEEECcC-------CcccCHHHHHHHHhhCC--CCcEEEeCCC-C
Confidence 235667777777888777799999999999999999998321 11123566777777663 5999999999 8
Q ss_pred HHHHHHHHHcCcceeeecccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+|+.+++++||++|.++|.++.
T Consensus 163 ~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 163 LENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHHCCCeEEEEehhccc
Confidence 99999999999999999999864
No 54
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.46 E-value=2.1e-12 Score=114.13 Aligned_cols=175 Identities=14% Similarity=0.220 Sum_probs=133.3
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHH----h-hcCCcEEEEeecCCCC
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTR----S-LTERPFGVGVVLAFPH 76 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r----~-~~~~p~gvnl~~~~~~ 76 (332)
+.|. +.||| |.- ...+++.+..++++ ||+.++.. .+.+|+.+ +.+++++ + ..+..+|++-+.+
T Consensus 10 ~~l~-~~~vi--~Vv-r~~~~~~a~~~~~al~~gGi~~iEi-T~~tp~a~-~~i~~l~~~~~~~~p~~~vGaGTVl~--- 80 (222)
T PRK07114 10 TAMK-ATGMV--PVF-YHADVEVAKKVIKACYDGGARVFEF-TNRGDFAH-EVFAELVKYAAKELPGMILGVGSIVD--- 80 (222)
T ss_pred HHHH-hCCEE--EEE-EcCCHHHHHHHHHHHHHCCCCEEEE-eCCCCcHH-HHHHHHHHHHHhhCCCeEEeeEeCcC---
Confidence 4443 55666 654 45677777777664 89999976 46666543 3334442 2 2345678887774
Q ss_pred HHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHH
Q 020013 77 NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLP 156 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~ 156 (332)
.++++.+.+.|++++... + ..+++++.+++.++++++.+.|+.|+..+.+.|+|.|.+...+.+| ...++
T Consensus 81 ~e~a~~a~~aGA~FiVsP-~-~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G--------~~~ik 150 (222)
T PRK07114 81 AATAALYIQLGANFIVTP-L-FNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYG--------PGFVK 150 (222)
T ss_pred HHHHHHHHHcCCCEEECC-C-CCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccC--------HHHHH
Confidence 678999999999999887 3 3678999999999999999999999999999999999996543333 34566
Q ss_pred HHHHHhCCCCCcEEeecCcCCH--HHHHHHHHcCcceeeeccccccC
Q 020013 157 MVVDLIGDRDIPIIAAGGIVDA--RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 157 ~i~~~~~~~~iPviaaGGI~~~--~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+..-++ ++|+++.||| +. +|+.+++++|+.+|.+||.++..
T Consensus 151 al~~p~p--~i~~~ptGGV-~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 151 AIKGPMP--WTKIMPTGGV-EPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred HHhccCC--CCeEEeCCCC-CcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 6655554 7999999999 55 89999999999999999998753
No 55
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.46 E-value=4e-12 Score=112.31 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=119.4
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+..+.++ |+..+...- -.+.....+.++++++... +++++++++ +.++.+.+.|+++|+++....+...++
T Consensus 25 ~~~~~~~~~-gv~~v~lr~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~----~~~~~a~~~gad~vh~~~~~~~~~~~~ 98 (212)
T PRK00043 25 EVVEAALEG-GVTLVQLREKGLDTRERLELARALKELCR-RYGVPLIVN----DRVDLALAVGADGVHLGQDDLPVADAR 98 (212)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEecCcccCCHHHHH
Confidence 334444444 455554311 1234445556666655433 477777774 468889999999999975544455666
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCc-ccCCCC-chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGG-HVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGG-h~~~~~-~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.+++.+..+...++|.+++.++.+.|+|+|.+.....++ |..... ..+..++++++..+ ++||++.||| +.+++.
T Consensus 99 ~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~ 175 (212)
T PRK00043 99 ALLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAP 175 (212)
T ss_pred HHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHH
Confidence 677778889999999999999999999999985543333 321111 23678888887762 3999999999 899999
Q ss_pred HHHHcCcceeeeccccccCc
Q 020013 183 AALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~ 202 (332)
+++.+||++|.+||.++.++
T Consensus 176 ~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 176 EVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HHHHcCCCEEEEeHHhhcCC
Confidence 99999999999999988653
No 56
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.45 E-value=5.7e-12 Score=109.43 Aligned_cols=166 Identities=19% Similarity=0.272 Sum_probs=119.3
Q ss_pred HHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+.+..++| +..+... .-.++....+.++++++.+. +++++++++ +.++.+.+.+++.+++.........++
T Consensus 16 ~~l~~l~~~g-~~~i~lr~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~----~~~~~a~~~g~~~vh~~~~~~~~~~~~ 89 (196)
T cd00564 16 EVVEAALKGG-VTLVQLREKDLSARELLELARALRELCR-KYGVPLIIN----DRVDLALAVGADGVHLGQDDLPVAEAR 89 (196)
T ss_pred HHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEecCcccCCHHHHH
Confidence 3444454554 4444331 11244555667777776654 688888884 357788899999998875444455566
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.++..+..+...+++.+++..+.+.|+|+|.+... ....+... ....+..++++++.. ++||++.||| +.+++.
T Consensus 90 ~~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pv~a~GGi-~~~~i~ 165 (196)
T cd00564 90 ALLGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV---EIPVVAIGGI-TPENAA 165 (196)
T ss_pred HHcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHH
Confidence 66667888888899999999999999999988433 22223211 234477788877654 7999999999 789999
Q ss_pred HHHHcCcceeeeccccccC
Q 020013 183 AALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t 201 (332)
+++.+|+++|.+||.++.+
T Consensus 166 ~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 166 EVLAAGADGVAVISAITGA 184 (196)
T ss_pred HHHHcCCCEEEEehHhhcC
Confidence 9999999999999998865
No 57
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.45 E-value=5.2e-12 Score=110.64 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=116.6
Q ss_pred CCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEE
Q 020013 35 GGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113 (332)
Q Consensus 35 GglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v 113 (332)
||+-.+.... ..+.++..+..++++.++.+ +++-+++| +.++++++.++|.|+++..+.+....+++...+..+
T Consensus 33 ~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~-~~v~liIN----d~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iI 107 (211)
T COG0352 33 GGVTAVQLREKDLSDEEYLALAEKLRALCQK-YGVPLIIN----DRVDLALAVGADGVHLGQDDMPLAEARELLGPGLII 107 (211)
T ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHHHHH-hCCeEEec----CcHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEE
Confidence 6677775421 12333335555666665433 55666663 568899999999999998766777777777778889
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
..++++.+++.++.+.|+|||.+-.. +.-.+.+.+...+..+..+.+.. .+|+++.||| +.+++.+++..||+||
T Consensus 108 G~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 108 GLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENVPEVLEAGADGV 183 (211)
T ss_pred EeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHhCCCeE
Confidence 99999999999999999999998211 00011111123467777777765 6999999999 8999999999999999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
.+-|+++.+..
T Consensus 184 Avvsai~~a~d 194 (211)
T COG0352 184 AVVSAITSAAD 194 (211)
T ss_pred EehhHhhcCCC
Confidence 99999998544
No 58
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.45 E-value=3.5e-12 Score=125.85 Aligned_cols=129 Identities=29% Similarity=0.292 Sum_probs=95.0
Q ss_pred HHHHHHHhcCCcEEEEc--cCCC--cHHHHHHHHhC-C--CEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccC---
Q 020013 78 ENIKAILSEKVAVLQVS--WGEY--SEELVLEAHSA-G--VKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVI--- 146 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~g~~--~~~~i~~~~~~-g--~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~--- 146 (332)
+.++.+.+.|+|+|.+. .|.. ..+.++.+++. + +.|+ .+|.+.+.++.+.++|+|+|.+ |...|..+.
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v-g~g~Gs~c~tr~ 323 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV-GIGGGSICITRE 323 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE-CCCCCcCccccc
Confidence 44566778899998763 1210 13456666653 2 4444 3588999999999999999998 554443221
Q ss_pred ---CCCchhhhHHHHHHHhC------CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCC
Q 020013 147 ---GQDGLISLLPMVVDLIG------DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAH 207 (332)
Q Consensus 147 ---~~~~~~~ll~~i~~~~~------~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~ 207 (332)
...+.+..++++.++.. +.++|||+.|||.++.|+.+||++|||+|++|+.|..|.|||..
T Consensus 324 ~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~ 393 (502)
T PRK07107 324 QKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTN 393 (502)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCc
Confidence 12356777777777542 11389999999999999999999999999999999999999875
No 59
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=99.45 E-value=6.2e-12 Score=109.64 Aligned_cols=169 Identities=23% Similarity=0.336 Sum_probs=128.8
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.+++.+| .+|+|.. +++.+++.++++...+.. . .-|+++.+.+.++..+++.+.++++|++|
T Consensus 8 Glt~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~-~~VgVf~n~~~~~i~~i~~~~~ld~VQlH- 82 (208)
T COG0135 8 GLTRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---V-KVVGVFVNESIEEILEIAEELGLDAVQLH- 82 (208)
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---C-CEEEEECCCCHHHHHHHHHhcCCCEEEEC-
Confidence 689999999999998 5999975 356788888777776654 1 25788888876777778888899999999
Q ss_pred CCCcHHHHHHHHhCC-CEEEEecC--CH--HHHHHHHHcCCCEEEEecCC---CCcccCCCCchhhhHHHHHHHhCCCCC
Q 020013 96 GEYSEELVLEAHSAG-VKVVPQVG--SF--DEARKAVNAGVDAIIVQGRE---AGGHVIGQDGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 96 g~~~~~~i~~~~~~g-~~v~~~v~--s~--~~a~~a~~~g~D~ivv~G~e---aGGh~~~~~~~~~ll~~i~~~~~~~~i 167 (332)
|.++.++++.+++.. ++||..+. +. .+.......-+|.++++... .||. |....|.+++.. .. ..
T Consensus 83 G~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt--G~~fDW~~l~~~--~~---~~ 155 (208)
T COG0135 83 GDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT--GQTFDWNLLPKL--RL---SK 155 (208)
T ss_pred CCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC--CcEECHHHhccc--cc---cC
Confidence 677889999998764 77775443 22 23344555679999998753 3443 455678888876 12 67
Q ss_pred cEEeecCcCCHHHHHHHHHcCc-ceeeeccccccCc
Q 020013 168 PIIAAGGIVDARGYVAALSLGA-QGICLGTRFVASE 202 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA-~gV~~GT~fl~t~ 202 (332)
|++.|||| +++|+.++++++. .||-+-|..=..+
T Consensus 156 ~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 156 PVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred CEEEECCC-CHHHHHHHHHhcCCceEEeccccccCC
Confidence 99999999 9999999999988 9999988754443
No 60
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.44 E-value=5.7e-12 Score=119.50 Aligned_cols=189 Identities=26% Similarity=0.334 Sum_probs=126.3
Q ss_pred hhcC--CccceecCCCCCC-CC----cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-
Q 020013 5 GMLG--FEYGIVQAPLGPD-IS----GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g-~s----~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~- 76 (332)
++|| +..||+.+||+++ .. +..++.+..++|-.-.++..+..+.|++ .+. ...|...++..+...
T Consensus 51 ~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~i----a~~---~~~~~~~Qly~~~d~~ 123 (356)
T PF01070_consen 51 TFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEI----AAA---SGGPLWFQLYPPRDRE 123 (356)
T ss_dssp EETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHH----HHH---CTSEEEEEEEGBSSHH
T ss_pred eeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHH----Hhh---ccCCeEEEEEEecCHH
Confidence 5666 5689999999732 11 3567777778886666665433444433 222 236777887765432
Q ss_pred --HHHHHHHHhcCCcEEEEccCC----------------CcH--------------------------------------
Q 020013 77 --NENIKAILSEKVAVLQVSWGE----------------YSE-------------------------------------- 100 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I~~~~g~----------------~~~-------------------------------------- 100 (332)
.+.++.+.+.|++++.++... ++.
T Consensus 124 ~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (356)
T PF01070_consen 124 LTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARF 203 (356)
T ss_dssp HHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHH
Confidence 345666677888887654100 000
Q ss_pred -----------HHHHHHH-hCCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCC
Q 020013 101 -----------ELVLEAH-SAGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRD 166 (332)
Q Consensus 101 -----------~~i~~~~-~~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~ 166 (332)
+.++.++ ...++++ ..|.+.++++.+.+.|+|+|++.|. ||.. +...++...|++++++++. +
T Consensus 204 ~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~h--GGr~~d~~~~~~~~L~~i~~~~~~-~ 280 (356)
T PF01070_consen 204 VGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNH--GGRQLDWGPPTIDALPEIRAAVGD-D 280 (356)
T ss_dssp HHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESG--TGTSSTTS-BHHHHHHHHHHHHTT-S
T ss_pred HHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCC--CcccCccccccccccHHHHhhhcC-C
Confidence 1122333 3466655 5689999999999999999999776 4432 2235778889999998853 7
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|||++|||.++.|+.+++++||++|.+|..|+..-.
T Consensus 281 ~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~ 317 (356)
T PF01070_consen 281 IPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALA 317 (356)
T ss_dssp SEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHH
T ss_pred eeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHH
Confidence 9999999999999999999999999999999987643
No 61
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=99.43 E-value=2.6e-12 Score=111.41 Aligned_cols=163 Identities=23% Similarity=0.360 Sum_probs=118.5
Q ss_pred CCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 22 ISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 22 ~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
..+++.+..++++ ||+.++.. .+.+++. .+.|+++++ ..+.-+|++-+.+ .++++.+.+.|++++... +
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEi-T~~t~~a-~~~I~~l~~~~p~~~vGAGTV~~---~e~a~~a~~aGA~FivSP-~- 88 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEI-TLRTPNA-LEAIEALRKEFPDLLVGAGTVLT---AEQAEAAIAAGAQFIVSP-G- 88 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEE-ETTSTTH-HHHHHHHHHHHTTSEEEEES--S---HHHHHHHHHHT-SEEEES-S-
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE-ecCCccH-HHHHHHHHHHCCCCeeEEEeccC---HHHHHHHHHcCCCEEECC-C-
Confidence 4455555555553 88999876 4667765 345565554 3456688887764 688999999999999887 3
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
..+++++.+++.++++++.+.|+.|+..+.+.|+|.|.+...+. .+-..+++.++.-++ ++|+++.||| +
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~-------~GG~~~ik~l~~p~p--~~~~~ptGGV-~ 158 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGA-------LGGPSYIKALRGPFP--DLPFMPTGGV-N 158 (196)
T ss_dssp --HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTT-------TTHHHHHHHHHTTTT--T-EEEEBSS---
T ss_pred CCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchh-------cCcHHHHHHHhccCC--CCeEEEcCCC-C
Confidence 46789999999999999999999999999999999999954422 111456777776554 7999999999 7
Q ss_pred HHHHHHHHHcCcceeeeccccccC
Q 020013 178 ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+|+.+++++|+.+|.+||.++..
T Consensus 159 ~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 159 PDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred HHHHHHHHhCCCEEEEECchhcCH
Confidence 899999999999999999987644
No 62
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.42 E-value=1.3e-11 Score=116.73 Aligned_cols=151 Identities=14% Similarity=0.214 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCcH--------------HHHHHHHh-CC
Q 020013 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYSE--------------ELVLEAHS-AG 110 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~~--------------~~i~~~~~-~g 110 (332)
.|...+.+..+++..+.|+.+|+...... .+..+.+.+.++|+|++++++++. ++++.+++ ..
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~ 165 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS 165 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC
Confidence 34455566666555578999999775542 234455566789999997654221 33455554 36
Q ss_pred CEEEEecC----C-HHHHHHHHHcCCCEEEEecCCCCccc-------------CCCC---chhhhHHHHHHHhCCCCCcE
Q 020013 111 VKVVPQVG----S-FDEARKAVNAGVDAIIVQGREAGGHV-------------IGQD---GLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 111 ~~v~~~v~----s-~~~a~~a~~~g~D~ivv~G~eaGGh~-------------~~~~---~~~~ll~~i~~~~~~~~iPv 169 (332)
++|+.+.+ + .+.++.+.+.|+|+|++.+.-.+... .++. ..+..+.++++.+ ++||
T Consensus 166 iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~---~ipI 242 (334)
T PRK07565 166 IPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV---GADL 242 (334)
T ss_pred CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc---CCCE
Confidence 88887743 2 24456678899999999775322211 0111 1234455555555 7999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|+.|||.|++|+.++|.+||++|++||.++.-
T Consensus 243 ig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred EEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 99999999999999999999999999999973
No 63
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.42 E-value=1.2e-11 Score=107.61 Aligned_cols=161 Identities=21% Similarity=0.270 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 22 ISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 22 ~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
..+++.+..++++ ||+.++.. .+.+|+.+ +.|+++++. .+.-+|++-+++ .+.++.+.+.|++++... +
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEi-t~~tp~a~-~~I~~l~~~~~~~~vGAGTVl~---~e~a~~ai~aGA~FivSP-~- 84 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEI-TLRTPAAL-DAIRAVAAEVEEAIVGAGTILN---AKQFEDAAKAGSRFIVSP-G- 84 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE-eCCCccHH-HHHHHHHHHCCCCEEeeEeCcC---HHHHHHHHHcCCCEEECC-C-
Confidence 4566666666654 88999977 46677654 456666543 345578887764 678999999999999887 3
Q ss_pred CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 98 YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 98 ~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
..+++++.+++.++++++.+.|+.|+..+.++|+|.|.+...+.-| -..+++.++.-++ ++|+++.||| +
T Consensus 85 ~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~G-------G~~yikal~~plp--~~~l~ptGGV-~ 154 (201)
T PRK06015 85 TTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAG-------GAAFLKALSSPLA--GTFFCPTGGI-S 154 (201)
T ss_pred CCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhC-------CHHHHHHHHhhCC--CCcEEecCCC-C
Confidence 4678999999999999999999999999999999999996532211 1346667766664 7999999999 8
Q ss_pred HHHHHHHHHcCcceeeeccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+|+.+++++|+..+..||.+.
T Consensus 155 ~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 155 LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred HHHHHHHHhCCCeEEEEchhhC
Confidence 9999999999988777777665
No 64
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.41 E-value=1e-11 Score=116.14 Aligned_cols=187 Identities=16% Similarity=0.107 Sum_probs=127.5
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHH-H-HHHH-hhcCCcEEEEeecCCCC--HHHHHHHHhc
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL-I-RKTR-SLTERPFGVGVVLAFPH--NENIKAILSE 86 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~-i-~~~r-~~~~~p~gvnl~~~~~~--~~~~~~~~~~ 86 (332)
|++.|||. |+|+..+..-+...|+.++..++ +.+.+.+... . +.+. .-.+.|+.++++.++++ .+..+.+.+.
T Consensus 2 ~~~lAPM~-g~Td~~fR~l~~~~g~~~~~~TE-Mv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~ 79 (318)
T TIGR00742 2 RFSVAPML-DWTDRHFRYFLRLLSKHTLLYTE-MITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKR 79 (318)
T ss_pred CEEEECCC-CCcCHHHHHHHHHhCCCCEEEeC-CEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhC
Confidence 78999998 89999999888777766666553 3333222111 1 1111 11367999999988763 1233445567
Q ss_pred CCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC-------C----HHHHHHHHHcCCCEEE
Q 020013 87 KVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG-------S----FDEARKAVNAGVDAII 135 (332)
Q Consensus 87 ~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~-------s----~~~a~~a~~~g~D~iv 135 (332)
++|.|.++.|+|.. ++++.+++ .+++|..++. + .+-++.+.+.|+|.|.
T Consensus 80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence 89999999988633 23334444 3677776652 1 1235567789999999
Q ss_pred EecCCC--CcccCC-----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 136 VQGREA--GGHVIG-----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 136 v~G~ea--GGh~~~-----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+.|... .|..+. ....|..+.++++.+. ++|||+.|||.+.+++.+++. |||||++|++++..+.
T Consensus 160 vHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~--~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~ 231 (318)
T TIGR00742 160 VHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP--HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPY 231 (318)
T ss_pred EeCCchhhcCCCccccccCCchhHHHHHHHHHhCC--CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCH
Confidence 998753 343211 1124777777777653 699999999999999999996 9999999999998643
No 65
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.41 E-value=1.6e-11 Score=110.41 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=126.8
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+++++.+.-..+||...++...+ ..+|+ .|+++++..+.|+---+-. .+....+.+.+.|
T Consensus 16 dv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~----~I~~I~~~V~iPVig~~ki--gh~~Ea~~L~~~G 89 (287)
T TIGR00343 16 DVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPK----MIKEIMDAVSIPVMAKVRI--GHFVEAQILEALG 89 (287)
T ss_pred EeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHH----HHHHHHHhCCCCEEEEeec--cHHHHHHHHHHcC
Confidence 478999999888999999887532 12343 3566666667775322111 1234577888999
Q ss_pred CcEEEEccCC-CcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcc---------------------
Q 020013 88 VAVLQVSWGE-YSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH--------------------- 144 (332)
Q Consensus 88 ~~~I~~~~g~-~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh--------------------- 144 (332)
+|+|.-+-=. |..+++...|. .++++++.+.+.+|+.++.+.|+|.|--.|....|.
T Consensus 90 vDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~ 169 (287)
T TIGR00343 90 VDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNM 169 (287)
T ss_pred CCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 9999643211 23466666665 489999999999999999999999998776533332
Q ss_pred ---------cCCCCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 145 ---------VIGQDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 145 ---------~~~~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.......+.++.++++.. ++||+ +.|||.|++++..++.+||+||.+||+++.+.
T Consensus 170 ~~~~~~~~~a~~~~~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 170 LEEEDLAAVAKELRVPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 235 (287)
T ss_pred cchhHHhhhhcccCCCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 000123577888888765 79998 99999999999999999999999999999754
No 66
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.40 E-value=2.1e-11 Score=106.07 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=115.3
Q ss_pred CCCceeecCCCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCE
Q 020013 34 AGGLGLLRAPDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVK 112 (332)
Q Consensus 34 aGglG~i~~~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~ 112 (332)
.||+..+.. ++.++.. .+.++++++.. +..+|.+.+.. .+.++.+.+.|+++|++.. ...++++..+..+++
T Consensus 27 ~~G~~~vev-~~~~~~~-~~~i~~l~~~~~~~~iGag~v~~---~~~~~~a~~~Ga~~i~~p~--~~~~~~~~~~~~~~~ 99 (190)
T cd00452 27 EGGIRAIEI-TLRTPGA-LEAIRALRKEFPEALIGAGTVLT---PEQADAAIAAGAQFIVSPG--LDPEVVKAANRAGIP 99 (190)
T ss_pred HCCCCEEEE-eCCChhH-HHHHHHHHHHCCCCEEEEEeCCC---HHHHHHHHHcCCCEEEcCC--CCHHHHHHHHHcCCc
Confidence 477888876 3455553 44677776654 35667766653 5788999999999998763 346788888888999
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 113 VVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
+++.+.|++|+..+.+.|+|+|.+... .. ....+++.++..++ ++|+++.||| +.+++.+++.+|+++|
T Consensus 100 ~i~gv~t~~e~~~A~~~Gad~i~~~p~-------~~-~g~~~~~~l~~~~~--~~p~~a~GGI-~~~n~~~~~~~G~~~v 168 (190)
T cd00452 100 LLPGVATPTEIMQALELGADIVKLFPA-------EA-VGPAYIKALKGPFP--QVRFMPTGGV-SLDNAAEWLAAGVVAV 168 (190)
T ss_pred EECCcCCHHHHHHHHHCCCCEEEEcCC-------cc-cCHHHHHHHHhhCC--CCeEEEeCCC-CHHHHHHHHHCCCEEE
Confidence 999999999999999999999988421 11 13456666665543 5899999999 9999999999999999
Q ss_pred eeccccc
Q 020013 193 CLGTRFV 199 (332)
Q Consensus 193 ~~GT~fl 199 (332)
.+|+.+.
T Consensus 169 ~v~s~i~ 175 (190)
T cd00452 169 GGGSLLP 175 (190)
T ss_pred EEchhcc
Confidence 9999987
No 67
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=4e-11 Score=102.19 Aligned_cols=172 Identities=19% Similarity=0.311 Sum_probs=121.9
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC---------CCCHHHHHHHHhcCCcEEEEccC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA---------FPHNENIKAILSEKVAVLQVSWG 96 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~---------~~~~~~~~~~~~~~~~~I~~~~g 96 (332)
.+|.|...+|..|+= . .+.+. ++.+|+.++.|+- +++-. .|..+.++.+.+.|+++|.+..-
T Consensus 37 ~mA~Aa~~gGAvgiR-~---~gv~d----Ikai~~~v~vPII-GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT 107 (229)
T COG3010 37 AMALAAEQGGAVGIR-I---EGVED----IKAIRAVVDVPII-GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDAT 107 (229)
T ss_pred HHHHHHHhCCcceEe-e---cchhh----HHHHHhhCCCCeE-EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecc
Confidence 344444444666652 2 23333 5567777777752 22211 12356688899999999988631
Q ss_pred C------CcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEE--ecCCCCcccC-CCCchhhhHHHHHHHhCCCCC
Q 020013 97 E------YSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIV--QGREAGGHVI-GQDGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 97 ~------~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~i 167 (332)
. ...+++++.|..|...+..++|++|...+.+.|+|+|-- .|+. ++.. ...+.+.+++++.+. ++
T Consensus 108 ~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT--~~~~~~~~pDf~lvk~l~~~----~~ 181 (229)
T COG3010 108 DRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYT--GYTEKPTEPDFQLVKQLSDA----GC 181 (229)
T ss_pred cCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEeccccccc--CCCCCCCCCcHHHHHHHHhC----CC
Confidence 1 234677777888999999999999999999999999853 3432 2221 224679999998873 79
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHH
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
+||+.|.+.+|+.+++++.+||++|++|+++-..+| +...|-+++
T Consensus 182 ~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~--It~~F~~~i 226 (229)
T COG3010 182 RVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEE--ITQWFVDAI 226 (229)
T ss_pred eEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHH--HHHHHHHHH
Confidence 999999999999999999999999999999877665 334444443
No 68
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.39 E-value=4.3e-11 Score=111.61 Aligned_cols=187 Identities=20% Similarity=0.197 Sum_probs=121.1
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC----------------------------CCHHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~e~~~~~i~~~r~ 60 (332)
++.||+.+.=. .-.+.+++.....+| +|++..++. ...+...+.+...+.
T Consensus 11 ~~nPv~~aag~-~~~~~~~~~~~~~~g-~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~ 88 (301)
T PRK07259 11 LKNPVMPASGT-FGFGGEYARFYDLNG-LGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLE 88 (301)
T ss_pred CCCCcEECCcC-CCCCHHHHHHhhhcC-CcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHh
Confidence 67899987621 134668877775554 555533211 011222222322222
Q ss_pred hcCCcEEEEeecCCCC--HHHHHHHHhcC-CcEEEEccCCC---------------cHHHHHHHHhC-CCEEEEecC-CH
Q 020013 61 LTERPFGVGVVLAFPH--NENIKAILSEK-VAVLQVSWGEY---------------SEELVLEAHSA-GVKVVPQVG-SF 120 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~--~~~~~~~~~~~-~~~I~~~~g~~---------------~~~~i~~~~~~-g~~v~~~v~-s~ 120 (332)
..+.|+.+|+..+.+. .+..+.+.+.| +|+|.++.++| ..++++.+++. .++|+.+++ +.
T Consensus 89 ~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 168 (301)
T PRK07259 89 EFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV 168 (301)
T ss_pred ccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 2368999999876541 22334455677 99999854331 12455666665 788887765 33
Q ss_pred ----HHHHHHHHcCCCEEEEecCCC-----------------CcccCCC---CchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 121 ----DEARKAVNAGVDAIIVQGREA-----------------GGHVIGQ---DGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 121 ----~~a~~a~~~g~D~ivv~G~ea-----------------GGh~~~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
+.++.+.+.|+|+|++.+... ||.. ++ ...+.++.++++.+ ++|||+.|||.
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~s-g~~~~p~~l~~v~~i~~~~---~ipvi~~GGI~ 244 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLS-GPAIKPIALRMVYQVYQAV---DIPIIGMGGIS 244 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccC-CcCcccccHHHHHHHHHhC---CCCEEEECCCC
Confidence 335667889999998855322 2221 11 12467788888876 79999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccC
Q 020013 177 DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++++.+++.+|||+|++||+++.-
T Consensus 245 ~~~da~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 245 SAEDAIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred CHHHHHHHHHcCCCceeEcHHHhcC
Confidence 9999999999999999999999983
No 69
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.38 E-value=5.6e-11 Score=105.59 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=117.6
Q ss_pred cHHHHHHHHhCCCcee--ecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc
Q 020013 24 GPELVAAVANAGGLGL--LRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS 99 (332)
Q Consensus 24 ~~~la~avs~aGglG~--i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~ 99 (332)
-.+++.+..++|.-++ +..... .++ +.++.+++..+.|+-+.-++. +..+++.+.+.|+|.|.+..-..+
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~----~~~~~i~~~v~iPi~~~~~i~--~~~~v~~~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSL----EDLRAVREAVSLPVLRKDFII--DPYQIYEARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCH----HHHHHHHHhcCCCEEECCeec--CHHHHHHHHHcCCCEEEEeeccCC
Confidence 4577787877775333 211111 123 345666665677876543322 245789999999999987532233
Q ss_pred ----HHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 ----EELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ----~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.++++..+..|+.++..+++.++++.+.+.|+|++.+.+.+ ++..+ ..+.++.++++.++ .++||++.|||
T Consensus 107 ~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~--~~~~~--~~~~~~~~l~~~~~-~~~pvia~gGI 181 (217)
T cd00331 107 DEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRD--LKTFE--VDLNTTERLAPLIP-KDVILVSESGI 181 (217)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCC--ccccC--cCHHHHHHHHHhCC-CCCEEEEEcCC
Confidence 23445556689999999999999999999999999987542 23211 22466777776542 16899999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
++++++.+++.+||+||++||+++...
T Consensus 182 ~s~edi~~~~~~Ga~gvivGsai~~~~ 208 (217)
T cd00331 182 STPEDVKRLAEAGADAVLIGESLMRAP 208 (217)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 999999999999999999999998654
No 70
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.37 E-value=2e-11 Score=107.44 Aligned_cols=176 Identities=22% Similarity=0.301 Sum_probs=128.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHh-hcCCcEEEEeecCCCCHHHHHHHHh
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRS-LTERPFGVGVVLAFPHNENIKAILS 85 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~-~~~~p~gvnl~~~~~~~~~~~~~~~ 85 (332)
+.|++ |.- ...+++.+..++++ ||+.++... +.+++. .+.++++++ ..+..+|++.+.+ .+.++.+.+
T Consensus 14 ~~~~i--aV~-r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~-~~~I~~l~~~~p~~~IGAGTVl~---~~~a~~a~~ 85 (212)
T PRK05718 14 AGPVV--PVI-VINKLEDAVPLAKALVAGGLPVLEVT-LRTPAA-LEAIRLIAKEVPEALIGAGTVLN---PEQLAQAIE 85 (212)
T ss_pred HCCEE--EEE-EcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccH-HHHHHHHHHHCCCCEEEEeeccC---HHHHHHHHH
Confidence 45666 553 34566666666654 789998774 667754 455666654 3456688887774 578899999
Q ss_pred cCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 86 EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
.|++++... +. .+++++.+++.++.+++.+.|+.|+..+.+.|+|.|.+...+.-| ....++.++..++
T Consensus 86 aGA~FivsP-~~-~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~g-------g~~~lk~l~~p~p-- 154 (212)
T PRK05718 86 AGAQFIVSP-GL-TPPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAEASG-------GVKMLKALAGPFP-- 154 (212)
T ss_pred cCCCEEECC-CC-CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhcc-------CHHHHHHHhccCC--
Confidence 999999887 43 458999999999999999999999999999999999994432111 1345666665554
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCC
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYA 206 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~ 206 (332)
++|++++||| +.+|+.+++++|+..+..||. |..++.-.
T Consensus 155 ~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~-L~~~~~~~ 193 (212)
T PRK05718 155 DVRFCPTGGI-SPANYRDYLALPNVLCIGGSW-MVPKDAIE 193 (212)
T ss_pred CCeEEEeCCC-CHHHHHHHHhCCCEEEEEChH-hCCcchhc
Confidence 6999999999 899999999999555555444 44444433
No 71
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.37 E-value=1.9e-11 Score=115.31 Aligned_cols=189 Identities=17% Similarity=0.104 Sum_probs=125.9
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHH--HHHHHH-hhcCCcEEEEeecCCCC--HHHHHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRD--LIRKTR-SLTERPFGVGVVLAFPH--NENIKAIL 84 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~--~i~~~r-~~~~~p~gvnl~~~~~~--~~~~~~~~ 84 (332)
+.|++.|||. |+|+..+..-+.+.|+.++..++ +.+.+.+.. ....++ .-.+.|+.++++.+++. .+..+.+.
T Consensus 10 ~~~~~lAPM~-g~td~~fR~~~~~~g~~~~~~te-mv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~ 87 (333)
T PRK11815 10 SRRFSVAPMM-DWTDRHCRYFHRLLSRHALLYTE-MVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAE 87 (333)
T ss_pred CCCEEEeCCC-CCcCHHHHHHHHHhCCCCEEEEC-CEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHHH
Confidence 5799999998 89999998888777865555443 222221111 011111 11357999999998763 12234455
Q ss_pred hcCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEec--C-----C----HHHHHHHHHcCCCE
Q 020013 85 SEKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQV--G-----S----FDEARKAVNAGVDA 133 (332)
Q Consensus 85 ~~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v--~-----s----~~~a~~a~~~g~D~ 133 (332)
+.++|.|.+++|+|.. ++++.+++ .+++|..++ + + .+-++.+.++|+|.
T Consensus 88 ~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~ 167 (333)
T PRK11815 88 DWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDT 167 (333)
T ss_pred hcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCE
Confidence 6799999999887532 33444554 356665532 1 1 23345677899999
Q ss_pred EEEecCCC--CcccCC-----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 134 IIVQGREA--GGHVIG-----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 134 ivv~G~ea--GGh~~~-----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.+.+... .|..+. +...+..+.++++.+. ++|||+.|||.+++++.++++ |||||++|++++..+.
T Consensus 168 i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 168 FIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP--HLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY 241 (333)
T ss_pred EEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC--CCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence 99987542 232211 1234777888877642 699999999999999999997 7999999999998754
No 72
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.37 E-value=4.1e-11 Score=109.22 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=121.0
Q ss_pred HHHHHHHHhCCCceeec--CCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc-
Q 020013 25 PELVAAVANAGGLGLLR--APDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (332)
Q Consensus 25 ~~la~avs~aGglG~i~--~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~- 99 (332)
.+++.+..++|.-++-. ...+ .+. +.+..+++.++.|+-..-|+.. ..+++.+.+.|+|+|.+.....+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~----~~l~~v~~~v~iPvl~kdfi~~--~~qi~~a~~~GAD~VlLi~~~l~~ 146 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSL----EYLRAARAAVSLPVLRKDFIID--PYQIYEARAAGADAILLIVAALDD 146 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCH----HHHHHHHHhcCCCEEeeeecCC--HHHHHHHHHcCCCEEEEEeccCCH
Confidence 57788777777544432 2111 133 3456666667888776544443 34788899999999998744422
Q ss_pred ---HHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 ---EELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ---~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.++++.++..|..++..+++.++++.+.+.|+|+|.+.+.... .. ...+....++.+.++. +.|+|+.|||.
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~--~~--~~d~~~~~~l~~~~p~-~~~vIaegGI~ 221 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLK--TF--EVDLETTERLAPLIPS-DRLVVSESGIF 221 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcc--cc--cCCHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence 2466677788999999999999999999999999988544321 11 1235556666665532 46999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++.+++.+|||+|.+||+++.++.
T Consensus 222 t~ed~~~~~~~Gad~vlVGsaI~~~~d 248 (260)
T PRK00278 222 TPEDLKRLAKAGADAVLVGESLMRADD 248 (260)
T ss_pred CHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 999999999999999999999997643
No 73
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.37 E-value=2.4e-11 Score=108.87 Aligned_cols=145 Identities=18% Similarity=0.281 Sum_probs=108.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC---C-CcHHHHHHHHhCCCEEEEecC--CHHH-HHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG---E-YSEELVLEAHSAGVKVVPQVG--SFDE-ARK 125 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g---~-~~~~~i~~~~~~g~~v~~~v~--s~~~-a~~ 125 (332)
+.++.+++.++.++.+.+++.++ .++++.+.+.+++.|++|.+ . .+...++.+++.|.++...++ ++.+ ++.
T Consensus 55 ~~~~~l~~~~~~~~~vhlmv~~p-~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~ 133 (229)
T PLN02334 55 PVVKALRKHTDAPLDCHLMVTNP-EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEP 133 (229)
T ss_pred HHHHHHHhcCCCcEEEEeccCCH-HHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 56778888888889999999876 57889999999999988877 2 244677888888998887775 4444 444
Q ss_pred HHHcC-CCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 126 AVNAG-VDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 126 a~~~g-~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
..+.| +|+|.+-....| |.. .....+..+.++++... ++||++.||| +.+++.+++++|||++++||+++.++
T Consensus 134 ~~~~~~~Dyi~~~~v~pg~~~~~-~~~~~~~~i~~~~~~~~--~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~ 209 (229)
T PLN02334 134 VVEKGLVDMVLVMSVEPGFGGQS-FIPSMMDKVRALRKKYP--ELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGAP 209 (229)
T ss_pred HHhccCCCEEEEEEEecCCCccc-cCHHHHHHHHHHHHhCC--CCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCCC
Confidence 44543 999977433322 211 12234666777766543 5899999999 89999999999999999999987643
No 74
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.36 E-value=7.4e-11 Score=111.55 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=127.3
Q ss_pred hhcC--CccceecCCCCCC-C--C--cHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-
Q 020013 5 GMLG--FEYGIVQAPLGPD-I--S--GPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH- 76 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g-~--s--~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~- 76 (332)
++|| +..||+-+||+.. + . ...++.+..++|..-++......+.|++. +.. .+.|+-..+.+....
T Consensus 73 ~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~----~~~--~~~~~wfQlY~~~dr~ 146 (367)
T TIGR02708 73 EFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEIS----EAL--NGTPHWFQFYMSKDDG 146 (367)
T ss_pred eeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHH----hhc--CCCceEEEEeccCCHH
Confidence 4666 5689999999631 1 1 24566777777755555443223444432 111 123444444333221
Q ss_pred --HHHHHHHHhcCCcEEEEccCC---------------------------------------------CcHHHHHHHHh-
Q 020013 77 --NENIKAILSEKVAVLQVSWGE---------------------------------------------YSEELVLEAHS- 108 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I~~~~g~---------------------------------------------~~~~~i~~~~~- 108 (332)
.+.++.+.++|.+++.+.... ..-+.++.+++
T Consensus 147 ~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~ 226 (367)
T TIGR02708 147 INRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGY 226 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHh
Confidence 334555556666655442110 00123455554
Q ss_pred CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 109 AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 109 ~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
.+++++ ..+.+.++++.+.+.|+|+|++.+. ||.. ++....+..|+++++++.. ++|||+.|||.++.|+.++|+
T Consensus 227 ~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~H--GGrq~~~~~a~~~~L~ei~~av~~-~i~vi~dGGIr~g~Dv~KaLa 303 (367)
T TIGR02708 227 SGLPVYVKGPQCPEDADRALKAGASGIWVTNH--GGRQLDGGPAAFDSLQEVAEAVDK-RVPIVFDSGVRRGQHVFKALA 303 (367)
T ss_pred cCCCEEEeCCCCHHHHHHHHHcCcCEEEECCc--CccCCCCCCcHHHHHHHHHHHhCC-CCcEEeeCCcCCHHHHHHHHH
Confidence 355655 5588999999999999999999766 3322 2223568889999888743 699999999999999999999
Q ss_pred cCcceeeeccccccCccCCCCHHHHHHHh
Q 020013 187 LGAQGICLGTRFVASEESYAHPEYKRKLV 215 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t~Es~~~~~~k~~~~ 215 (332)
+||++|.+|..|+..--....+..++.+.
T Consensus 304 lGAd~V~igR~~l~~la~~G~~gv~~~l~ 332 (367)
T TIGR02708 304 SGADLVALGRPVIYGLALGGSQGARQVFE 332 (367)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999998744444444444443
No 75
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.36 E-value=5.5e-11 Score=105.66 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=111.9
Q ss_pred HHHHHHHhCCC-ceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHH
Q 020013 26 ELVAAVANAGG-LGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELV 103 (332)
Q Consensus 26 ~la~avs~aGg-lG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i 103 (332)
+.+.++.. || +.++.... ..+.+++.++.+++++++. .+++.+++| +.++.+.+.++|.|+++..+.+....
T Consensus 30 ~~l~~al~-~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~-~~gv~liIN----d~~dlA~~~~adGVHLg~~d~~~~~~ 103 (221)
T PRK06512 30 KLLRAALQ-GGDVASVILPQYGLDEATFQKQAEKLVPVIQ-EAGAAALIA----GDSRIAGRVKADGLHIEGNLAALAEA 103 (221)
T ss_pred HHHHHHHc-CCCccEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEe----CHHHHHHHhCCCEEEECccccCHHHH
Confidence 34444433 55 56665421 1355667777777777653 356677764 45888999999999998544333333
Q ss_pred HHHHhCCCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
++....+..+... +++.+++.++.+.|+|||.+-..............+.++.++.+.. ++||++.||| +.+|+.
T Consensus 104 r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIGGI-~~~n~~ 179 (221)
T PRK06512 104 IEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQAGS-DLASAV 179 (221)
T ss_pred HHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEeCC-CHHHHH
Confidence 3332234444444 5688889889999999999833321111111112356676666665 7999999999 899999
Q ss_pred HHHHcCcceeeeccccccCcc
Q 020013 183 AALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~E 203 (332)
+++..||+||.+-|.++.++.
T Consensus 180 ~~~~~GA~giAvisai~~~~d 200 (221)
T PRK06512 180 EVAETGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHHhCCCEEEEhHHhhCCCC
Confidence 999999999999999996543
No 76
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.35 E-value=5.8e-11 Score=111.72 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecCCCC--HHHHHHHHhcCCcEEEEccCCCc--------------HHHHHHHHhC-CCE
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLAFPH--NENIKAILSEKVAVLQVSWGEYS--------------EELVLEAHSA-GVK 112 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~~~~--~~~~~~~~~~~~~~I~~~~g~~~--------------~~~i~~~~~~-g~~ 112 (332)
.+.+.+.+.++..+.|+.+|+....+. .+..+.+.+.++|+|.++.++++ .++++.+++. .++
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iP 165 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIP 165 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCC
Confidence 344445554444478999998765442 24455556678999999876421 1345555543 688
Q ss_pred EEEecC-C----HHHHHHHHHcCCCEEEEecCCCCccc-------------CCC---CchhhhHHHHHHHhCCCCCcEEe
Q 020013 113 VVPQVG-S----FDEARKAVNAGVDAIIVQGREAGGHV-------------IGQ---DGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 113 v~~~v~-s----~~~a~~a~~~g~D~ivv~G~eaGGh~-------------~~~---~~~~~ll~~i~~~~~~~~iPvia 171 (332)
|+.+.+ + .+.++.+.+.|+|+|++.++-.+... .++ ...+..+.++++.+ ++|||+
T Consensus 166 v~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~---~ipIig 242 (325)
T cd04739 166 VAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV---KASLAA 242 (325)
T ss_pred EEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc---CCCEEE
Confidence 887765 2 34566788999999999875311111 011 11244556666555 799999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|||.|++|+.+++.+||++|++||+++..
T Consensus 243 ~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~ 272 (325)
T cd04739 243 SGGVHDAEDVVKYLLAGADVVMTTSALLRH 272 (325)
T ss_pred ECCCCCHHHHHHHHHcCCCeeEEehhhhhc
Confidence 999999999999999999999999999974
No 77
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.34 E-value=7.8e-11 Score=103.31 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=106.1
Q ss_pred HHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEE---ecCCHHHHHH
Q 020013 53 DLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVP---QVGSFDEARK 125 (332)
Q Consensus 53 ~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~---~v~s~~~a~~ 125 (332)
+.++.+++. ++.|+.+.+.+.++....++.+.+.|++++.+|.-.. ..++++.+++.|++++. .+.|+++...
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~ 121 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK 121 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH
Confidence 446666654 5788888888776655557888999999999985322 23577888889999874 6668888888
Q ss_pred HHHcCCCEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 126 AVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 126 a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+...|+|++.+. ++. ++.. +.......++++++.. ++|+++.||| +++++.+++..|||++.+||.++.
T Consensus 122 ~~~~~~d~v~~~~~~~-~~~~-~~~~~~~~i~~~~~~~---~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 122 LLKLGVDIVILHRGID-AQAA-GGWWPEDDLKKVKKLL---GVKVAVAGGI-TPDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHCCCCEEEEcCccc-cccc-CCCCCHHHHHHHHhhc---CCCEEEECCc-CHHHHHHHHhcCCCEEEEeehhcC
Confidence 888999999883 222 1111 1223355666666543 7999999999 699999999999999999999864
No 78
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.33 E-value=3.9e-11 Score=107.42 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=121.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHH----HHHH-HhhcCCcEEEEeecCCCC--HHHHHHHH
Q 020013 12 GIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL----IRKT-RSLTERPFGVGVVLAFPH--NENIKAIL 84 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~----i~~~-r~~~~~p~gvnl~~~~~~--~~~~~~~~ 84 (332)
|+++|||. ++++..+..-+.+.| ..+..++ +...+.+... .... +...+.|+.+++....+. .+..+.+.
T Consensus 1 ~~~~aPm~-~~~~~~fR~l~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~ 77 (231)
T cd02801 1 KLILAPMV-GVTDLPFRLLCRRYG-ADLVYTE-MISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVE 77 (231)
T ss_pred CeEeCCCC-CCcCHHHHHHHHHHC-CCEEEec-CEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57899997 799999999888887 4544443 2221111111 1111 112357889988876542 22344556
Q ss_pred hcCCcEEEEccCCCc----------------H---HHHHHHHhC-CCEEEEecC--------CHHHHHHHHHcCCCEEEE
Q 020013 85 SEKVAVLQVSWGEYS----------------E---ELVLEAHSA-GVKVVPQVG--------SFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 85 ~~~~~~I~~~~g~~~----------------~---~~i~~~~~~-g~~v~~~v~--------s~~~a~~a~~~g~D~ivv 136 (332)
+.|.|.|.++.|+|. . ++++.+++. ++++...+. ..+.++.+.+.|+|+|.+
T Consensus 78 ~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 78 ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTV 157 (231)
T ss_pred hcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEE
Confidence 679999999977631 1 344555543 445554432 122344566789999999
Q ss_pred ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccCcc
Q 020013 137 QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEE 203 (332)
Q Consensus 137 ~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t~E 203 (332)
.+....+.. .....+..+.++++.. ++||++.|||.+.+++.+++.. |||+|++|+.++..++
T Consensus 158 ~~~~~~~~~-~~~~~~~~~~~i~~~~---~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~ 221 (231)
T cd02801 158 HGRTREQRY-SGPADWDYIAEIKEAV---SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPW 221 (231)
T ss_pred CCCCHHHcC-CCCCCHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCH
Confidence 765322111 1123477777887765 7999999999999999999998 8999999999998754
No 79
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.32 E-value=1.1e-10 Score=101.98 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=115.4
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+....+.| +..+.... ..+...+.+.+.+++...+ ++++.++++ +.++.+.+.+++.|++..+..+....+
T Consensus 17 ~~~~~~~~~g-~~~v~lR~~~~~~~~~~~~~~~l~~~~~-~~~~~l~i~----~~~~la~~~g~~GvHl~~~~~~~~~~r 90 (196)
T TIGR00693 17 NRVEAALKGG-VTLVQLRDKGSNTRERLALAEKLQELCR-RYGVPFIVN----DRVDLALALGADGVHLGQDDLPASEAR 90 (196)
T ss_pred HHHHHHHhcC-CCEEEEecCCCCHHHHHHHHHHHHHHHH-HhCCeEEEE----CHHHHHHHcCCCEEecCcccCCHHHHH
Confidence 3344444555 56654311 1244555666666665532 255666663 357788899999999976554555555
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.....+..+...+++.+++..+.+.|+|++.+... ..+.+... +...+..+.++.+... ++||++.||| +.+++.
T Consensus 91 ~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~GGI-~~~~~~ 167 (196)
T TIGR00693 91 ALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIGGI-TLENAA 167 (196)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHH
Confidence 55556788889999999999999999999987432 22222211 1123667777766542 5999999999 899999
Q ss_pred HHHHcCcceeeeccccccC
Q 020013 183 AALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t 201 (332)
+++.+|++||.+|+.++.+
T Consensus 168 ~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 168 EVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred HHHHcCCCEEEEhHHhhCC
Confidence 9999999999999999965
No 80
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=99.32 E-value=1.3e-10 Score=102.23 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=117.0
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++| .+||+. ++++.+++..+++.+.+.. ..-.|+++++.+.++..+.+...++|+|++|
T Consensus 7 Git~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~---~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH- 82 (207)
T PRK13958 7 GFTTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPN---HIDKVCVVVNPDLTTIEHILSNTSINTIQLH- 82 (207)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCC---CCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC-
Confidence 689999999999998 599995 3456788887777666542 1224778888765666677777899999999
Q ss_pred CCCcHHHHHHHHhC--CCEEEEecCC-HHHHH--HHHHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCCCCc
Q 020013 96 GEYSEELVLEAHSA--GVKVVPQVGS-FDEAR--KAVNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 96 g~~~~~~i~~~~~~--g~~v~~~v~s-~~~a~--~a~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iP 168 (332)
|..++++++.++.. +++++..+.- ..... ..+...+|+++++.. ..||. |....|.+++.+ . ..|
T Consensus 83 G~e~~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt--G~~~dw~~~~~~---~---~~p 154 (207)
T PRK13958 83 GTESIDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGT--GQTYDWTILKHI---K---DIP 154 (207)
T ss_pred CCCCHHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcC--CcEeChHHhhhc---c---CCC
Confidence 66678888888864 4677754432 22211 112335899999753 22332 344568777654 2 469
Q ss_pred EEeecCcCCHHHHHHHHH--cCcceeeecccc
Q 020013 169 IIAAGGIVDARGYVAALS--LGAQGICLGTRF 198 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~--~GA~gV~~GT~f 198 (332)
++.|||| +++|+.+++. .+..||-+-|.+
T Consensus 155 ~iLAGGL-~peNV~~a~~~~~~p~gVDvsSGV 185 (207)
T PRK13958 155 YLIAGGI-NSENIQTVEQLKLSHQGYDIASGI 185 (207)
T ss_pred EEEECCC-CHHHHHHHHhcCCCCCEEEccccc
Confidence 9999999 8999999875 588999998776
No 81
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.32 E-value=6.3e-11 Score=112.34 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=121.4
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C------C-------------HHHHHHHHHHHHhh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E------A-------------PDYLRDLIRKTRSL 61 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~------~-------------~e~~~~~i~~~r~~ 61 (332)
++.||+.+.= ...+.+......++| +|++..++. . . -..++..++++++.
T Consensus 58 l~nPi~~AsG--~~~~~~~~~~~~~~G-~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~ 134 (344)
T PRK05286 58 FPNPVGLAAG--FDKNGEAIDALGALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKA 134 (344)
T ss_pred CCCCCEECCC--CCCChHHHHHHHHcC-CCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHh
Confidence 6679987652 235667777776654 454432110 0 0 01133444444433
Q ss_pred -cCCcEEEEeecCC------CCHHHHHHHHhc--CCcEEEEccCCCc-------------HHHHHHHHhC-C-----CEE
Q 020013 62 -TERPFGVGVVLAF------PHNENIKAILSE--KVAVLQVSWGEYS-------------EELVLEAHSA-G-----VKV 113 (332)
Q Consensus 62 -~~~p~gvnl~~~~------~~~~~~~~~~~~--~~~~I~~~~g~~~-------------~~~i~~~~~~-g-----~~v 113 (332)
.+.|+++|+..+. ..+++.+.+.+. .+|++.+++++|. .++++.+++. + ++|
T Consensus 135 ~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV 214 (344)
T PRK05286 135 YRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPL 214 (344)
T ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCce
Confidence 4689999997652 124455444443 4999999876642 2455566552 4 888
Q ss_pred EEecC---C----HHHHHHHHHcCCCEEEEecCC--------------CCcccCCCC---chhhhHHHHHHHhCCCCCcE
Q 020013 114 VPQVG---S----FDEARKAVNAGVDAIIVQGRE--------------AGGHVIGQD---GLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 114 ~~~v~---s----~~~a~~a~~~g~D~ivv~G~e--------------aGGh~~~~~---~~~~ll~~i~~~~~~~~iPv 169 (332)
+.+++ + .+-++.+.+.|+|+|++.|.. .||.. +.. ..+..+.++++.+.. ++||
T Consensus 215 ~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S-G~~~~~~~l~~v~~l~~~~~~-~ipI 292 (344)
T PRK05286 215 LVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS-GRPLFERSTEVIRRLYKELGG-RLPI 292 (344)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc-cHHHHHHHHHHHHHHHHHhCC-CCCE
Confidence 88775 2 234566778899999998752 23332 221 245677777776632 5999
Q ss_pred EeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 170 IAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++.|||.+++++.+++.+|||+|++||+++..
T Consensus 293 ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~ 324 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYE 324 (344)
T ss_pred EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999853
No 82
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.31 E-value=1.2e-10 Score=109.80 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=79.1
Q ss_pred HHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
.++.+++. +..|+..|.+.++++.+.+.|+|+|++.+. ||.. .+..+++..++++++.+ ++|||+.|||.++
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnh--GGrqld~~~~~~~~L~ei~~~~---~~~vi~dGGIr~g 301 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNH--GGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRRG 301 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCC--CcCCCcCCccHHHHHHHHHHHh---CCeEEEeCCCCCH
Confidence 34555543 455667899999999999999999999765 4433 22345688899999887 6999999999999
Q ss_pred HHHHHHHHcCcceeeeccccccCcc
Q 020013 179 RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.|+.++|++||++|.+|+.|+..-.
T Consensus 302 ~Dv~KALaLGA~aV~iGr~~l~~la 326 (361)
T cd04736 302 SDIVKALALGANAVLLGRATLYGLA 326 (361)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHH
Confidence 9999999999999999999995543
No 83
>PLN02826 dihydroorotate dehydrogenase
Probab=99.31 E-value=2.2e-10 Score=110.22 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=94.2
Q ss_pred cEEEEeecCCC----CHHHHHHHHhc--CCcEEEEccCCCc-------------HHHHHHHHh----------CCCEEEE
Q 020013 65 PFGVGVVLAFP----HNENIKAILSE--KVAVLQVSWGEYS-------------EELVLEAHS----------AGVKVVP 115 (332)
Q Consensus 65 p~gvnl~~~~~----~~~~~~~~~~~--~~~~I~~~~g~~~-------------~~~i~~~~~----------~g~~v~~ 115 (332)
|++||+..+.. .+++.+.+... .+|++.++..+|. .++++.+++ ..++++.
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~v 267 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLV 267 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 89999976531 14455444433 3899998755431 133444431 2478887
Q ss_pred ecC---CHHH----HHHHHHcCCCEEEEecC---------------CCCcccCCCC--chhhhHHHHHHHhCCCCCcEEe
Q 020013 116 QVG---SFDE----ARKAVNAGVDAIIVQGR---------------EAGGHVIGQD--GLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 116 ~v~---s~~~----a~~a~~~g~D~ivv~G~---------------eaGGh~~~~~--~~~~ll~~i~~~~~~~~iPvia 171 (332)
+++ +.++ ++.+.+.|+|+|++.++ +.||..+.+. ..+..++++.+.++. ++|||+
T Consensus 268 KlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~-~ipIIg 346 (409)
T PLN02826 268 KIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG-KIPLVG 346 (409)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC-CCcEEE
Confidence 774 3223 56688999999999762 3455542221 246677888877643 699999
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|||.+++|+.+++.+||+.||++|+|+..
T Consensus 347 vGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 347 CGGVSSGEDAYKKIRAGASLVQLYTAFAYE 376 (409)
T ss_pred ECCCCCHHHHHHHHHhCCCeeeecHHHHhc
Confidence 999999999999999999999999999874
No 84
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.31 E-value=2.1e-10 Score=106.84 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=122.0
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC---------------------------CC--------HHHHHH
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW---------------------------EA--------PDYLRD 53 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~---------------------------~~--------~e~~~~ 53 (332)
++.||+.+.=. ...+.+.......+ |+|++..++. .. .+...+
T Consensus 11 l~nPi~~aag~-~~~~~~~~~~~~~~-G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~~~~~~ 88 (299)
T cd02940 11 FPNPFGLASAP-PTTSYPMIRRAFEA-GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPLEYWLK 88 (299)
T ss_pred cCCCCEeCCcC-CCCCHHHHHHHHHh-CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCHHHHHH
Confidence 67899987721 12467777777676 4655532210 00 122222
Q ss_pred HHHHHHhhc-CCcEEEEeecC-CCCHHH---HHHHHhcCCcEEEEccCCCc---------------H---HHHHHHHh-C
Q 020013 54 LIRKTRSLT-ERPFGVGVVLA-FPHNEN---IKAILSEKVAVLQVSWGEYS---------------E---ELVLEAHS-A 109 (332)
Q Consensus 54 ~i~~~r~~~-~~p~gvnl~~~-~~~~~~---~~~~~~~~~~~I~~~~g~~~---------------~---~~i~~~~~-~ 109 (332)
.+.+++... +.|+.++++.. .+ +++ ++.+.+.++|+|.++.++|. + ++++.+++ .
T Consensus 89 ~~~~~~~~~~~~p~i~si~G~~~~-~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 89 EIRELKKDFPDKILIASIMCEYNK-EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV 167 (299)
T ss_pred HHHHHHhhCCCCeEEEEecCCCCH-HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc
Confidence 333333333 47888888775 43 333 34444568999999877642 1 23445554 3
Q ss_pred CCEEEEecCC-----HHHHHHHHHcCCCEEEEecCC----------------------CCcccCCC---CchhhhHHHHH
Q 020013 110 GVKVVPQVGS-----FDEARKAVNAGVDAIIVQGRE----------------------AGGHVIGQ---DGLISLLPMVV 159 (332)
Q Consensus 110 g~~v~~~v~s-----~~~a~~a~~~g~D~ivv~G~e----------------------aGGh~~~~---~~~~~ll~~i~ 159 (332)
.++|+.++.. .+.++.+++.|+|+|++.++- .||.. |+ ...+..+.+++
T Consensus 168 ~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s-G~a~~p~~l~~v~~~~ 246 (299)
T cd02940 168 KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS-GPAVKPIALRAVSQIA 246 (299)
T ss_pred CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc-CCCcchHHHHHHHHHH
Confidence 6888887652 245667889999999965422 23332 22 12478888888
Q ss_pred HHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 160 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 160 ~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+.. ++|||+.|||.+++|+.+++.+|||+|++||+++..
T Consensus 247 ~~~~~-~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~ 287 (299)
T cd02940 247 RAPEP-GLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQ 287 (299)
T ss_pred HhcCC-CCcEEEECCCCCHHHHHHHHHcCCChheEceeeccc
Confidence 87632 699999999999999999999999999999998864
No 85
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=3.2e-11 Score=104.31 Aligned_cols=171 Identities=21% Similarity=0.300 Sum_probs=130.8
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHh
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILS 85 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~ 85 (332)
++|+| |.- ...+++.+..++.+ ||+..|.. .+.+|.. .+.|+.+++. .+.-+|.+.+++ .++++.+.+
T Consensus 12 ~~~vI--~Vl-r~~~~e~a~~~a~Ali~gGi~~IEI-Tl~sp~a-~e~I~~l~~~~p~~lIGAGTVL~---~~q~~~a~~ 83 (211)
T COG0800 12 AQPVV--PVI-RGDDVEEALPLAKALIEGGIPAIEI-TLRTPAA-LEAIRALAKEFPEALIGAGTVLN---PEQARQAIA 83 (211)
T ss_pred HCCee--EEE-EeCCHHHHHHHHHHHHHcCCCeEEE-ecCCCCH-HHHHHHHHHhCcccEEccccccC---HHHHHHHHH
Confidence 56777 664 56788888888876 89999987 4677765 3455555443 345677777764 678999999
Q ss_pred cCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 86 EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
.|+++|... |. .+++++.+++.++++++.+.|+.|+..+.+.|++.+.+...+.=|. ...++.+.--+ .
T Consensus 84 aGa~fiVsP-~~-~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg-------~~~~ka~~gP~--~ 152 (211)
T COG0800 84 AGAQFIVSP-GL-NPEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGG-------PAMLKALAGPF--P 152 (211)
T ss_pred cCCCEEECC-CC-CHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCc-------HHHHHHHcCCC--C
Confidence 999999887 54 5789999999999999999999999999999999999865432211 12233322222 2
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++++..||| +..|+.+++++|+.+|-+||.+..
T Consensus 153 ~v~~~pTGGV-s~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 153 QVRFCPTGGV-SLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred CCeEeecCCC-CHHHHHHHHhCCceEEecCccccC
Confidence 6899999999 789999999999888888888763
No 86
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.30 E-value=6.3e-11 Score=102.29 Aligned_cols=179 Identities=25% Similarity=0.289 Sum_probs=114.7
Q ss_pred ecCCCCCCC--CcHHHHHHHHhCCCceeecCCCC-CCHHH---HH-HHHHHHHhhcCCcEEEEeecCCCCHHH---HHHH
Q 020013 14 VQAPLGPDI--SGPELVAAVANAGGLGLLRAPDW-EAPDY---LR-DLIRKTRSLTERPFGVGVVLAFPHNEN---IKAI 83 (332)
Q Consensus 14 i~apM~~g~--s~~~la~avs~aGglG~i~~~~~-~~~e~---~~-~~i~~~r~~~~~p~gvnl~~~~~~~~~---~~~~ 83 (332)
+.++|..+. ...+++..+.+ +|.+++..... .++.. .. +.+..++...+.|+.+++..+.+.... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 2 ILALLAGGPSGDPVELAKAAAE-AGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred eeeccccCchHHHHHHHHHHHc-CCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 467777433 34566666654 44555543210 01110 00 234455555678999999886653222 2477
Q ss_pred HhcCCcEEEEccCCC-----cHHHHHHHHhC--CCEEEEecCCHHHHHH--HHHcCCCEEEEecCCCCcccCCCCc-hhh
Q 020013 84 LSEKVAVLQVSWGEY-----SEELVLEAHSA--GVKVVPQVGSFDEARK--AVNAGVDAIIVQGREAGGHVIGQDG-LIS 153 (332)
Q Consensus 84 ~~~~~~~I~~~~g~~-----~~~~i~~~~~~--g~~v~~~v~s~~~a~~--a~~~g~D~ivv~G~eaGGh~~~~~~-~~~ 153 (332)
.+.++|.|+++...+ ..++++.+++. +++++..++...+... +.+.|+|+|.+.+...++....... ...
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~ 160 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADL 160 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHH
Confidence 888999999996654 45677777775 7888888875444333 4788999999977644433211111 123
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+..+.... ++||+++|||.+++++.+++..|||+|++||
T Consensus 161 ~~~~~~~~~---~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 161 LLILAKRGS---KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHHhcC---CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 333444333 7999999999988999999999999999996
No 87
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.29 E-value=1.1e-10 Score=103.66 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=107.8
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC--CHHHHHHHHH
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG--SFDEARKAVN 128 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~~ 128 (332)
.++.+|+. ++.|+-|+|++..| +.+++...++|++.|.+|+.. .+.+.++.+|+.|++....+. |+-+...-+-
T Consensus 48 ~i~~i~~~~~~~~~dvHLMv~~p-~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l 126 (220)
T PRK08883 48 ICKALRDYGITAPIDVHLMVKPV-DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIM 126 (220)
T ss_pred HHHHHHHhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 46677776 68999999999877 678999999999999999752 245788899999998765443 4433333334
Q ss_pred cCCCEEEEecCC--CCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 129 AGVDAIIVQGRE--AGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 129 ~g~D~ivv~G~e--aGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.-+|.|++-+.+ .||.. .....+..+.++++...+ .++|+.+.||| +.+++..+.++|||++++||+++..
T Consensus 127 ~~~D~vlvMtV~PGfgGq~-fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI-~~eni~~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 127 DKVDLILLMSVNPGFGGQS-FIPHTLDKLRAVRKMIDESGRDIRLEIDGGV-KVDNIREIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred HhCCeEEEEEecCCCCCce-ecHhHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 468999985543 34443 122446677777766531 24899999999 7999999999999999999998754
No 88
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.28 E-value=1.6e-10 Score=108.66 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=112.9
Q ss_pred HHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHH
Q 020013 27 LVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLE 105 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~ 105 (332)
.+.++.. +|+..+..... .+...+.+..+.++.+.. .+++.++++ +.++++...++|.|+++..+.+....+.
T Consensus 162 ~l~~al~-~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-~~~~~lIIN----D~vdlAl~~~aDGVHLgq~dl~~~~aR~ 235 (347)
T PRK02615 162 VVEAALK-GGVTLVQYRDKTADDRQRLEEAKKLKELCH-RYGALFIVN----DRVDIALAVDADGVHLGQEDLPLAVARQ 235 (347)
T ss_pred HHHHHHH-cCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----ChHHHHHHcCCCEEEeChhhcCHHHHHH
Confidence 3344434 45777755211 233344555555555432 245556663 4578899999999999755544444454
Q ss_pred HHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 106 AHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 106 ~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
+...+..+...++|.+++..+.+.|+|||.+... ....|.+.....+..+..+.+.. ++||++.||| +.+++.++
T Consensus 236 llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~---~iPv~AiGGI-~~~ni~~l 311 (347)
T PRK02615 236 LLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA---PIPWFAIGGI-DKSNIPEV 311 (347)
T ss_pred hcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHH
Confidence 4445667888999999999999999999988322 11222211223367777777655 7999999999 89999999
Q ss_pred HHcCcceeeeccccccC
Q 020013 185 LSLGAQGICLGTRFVAS 201 (332)
Q Consensus 185 l~~GA~gV~~GT~fl~t 201 (332)
+.+||+||.+++.++.+
T Consensus 312 ~~~Ga~gVAvisaI~~a 328 (347)
T PRK02615 312 LQAGAKRVAVVRAIMGA 328 (347)
T ss_pred HHcCCcEEEEeHHHhCC
Confidence 99999999999999965
No 89
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=3.4e-10 Score=98.60 Aligned_cols=179 Identities=21% Similarity=0.287 Sum_probs=130.0
Q ss_pred cHHHHHHHHhCCCceeecC----CCC---C--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 24 GPELVAAVANAGGLGLLRA----PDW---E--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~----~~~---~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
-.+.+.++.++| ...+.. +.+ . .|+ .++.+|+.++.|+-|++++..| +.+++...++|++.|++|
T Consensus 18 l~~el~~~~~ag-ad~iH~DVMDghFVPNiTfGp~----~v~~l~~~t~~p~DvHLMV~~p-~~~i~~fa~agad~It~H 91 (220)
T COG0036 18 LGEELKALEAAG-ADLIHIDVMDGHFVPNITFGPP----VVKALRKITDLPLDVHLMVENP-DRYIEAFAKAGADIITFH 91 (220)
T ss_pred HHHHHHHHHHcC-CCEEEEeccCCCcCCCcccCHH----HHHHHhhcCCCceEEEEecCCH-HHHHHHHHHhCCCEEEEE
Confidence 355667776665 344432 111 1 233 3667777888999999999887 788999999999999999
Q ss_pred cCC--CcHHHHHHHHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEE--ecCCCCcccCCCCchhhhHHHHHHHhCCC-CC
Q 020013 95 WGE--YSEELVLEAHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIV--QGREAGGHVIGQDGLISLLPMVVDLIGDR-DI 167 (332)
Q Consensus 95 ~g~--~~~~~i~~~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv--~G~eaGGh~~~~~~~~~ll~~i~~~~~~~-~i 167 (332)
... ...+.++.+|+.|++.... ..|+-++..-+-.-+|.|.+ .++..||.. .....+..++++++...+. ++
T Consensus 92 ~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~-Fi~~~l~Ki~~lr~~~~~~~~~ 170 (220)
T COG0036 92 AEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK-FIPEVLEKIRELRAMIDERLDI 170 (220)
T ss_pred eccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc-cCHHHHHHHHHHHHHhcccCCe
Confidence 642 3457889999999997654 34666666666667999987 566667765 2335567777777766421 45
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
-+-..||| +.+++..+.++|||-+++||++....+ |++.+..
T Consensus 171 ~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d------~~~~i~~ 212 (220)
T COG0036 171 LIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADD------YKATIRE 212 (220)
T ss_pred EEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCcc------HHHHHHH
Confidence 68899999 899999999999999999997766544 6666554
No 90
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.27 E-value=5.4e-10 Score=98.41 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=115.4
Q ss_pred CcHHHHHHHHh--CCCceeecCC-CCCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 23 SGPELVAAVAN--AGGLGLLRAP-DWEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 23 s~~~la~avs~--aGglG~i~~~-~~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
.+++-+..+++ .+++.++..+ .+.++.. .+.++.+|+. ++..+.+.+.+.++....++.+.+.|+|+|.+|...+
T Consensus 9 ~~~~~a~~~~~~l~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~ 87 (206)
T TIGR03128 9 LDIEEALELAEKVADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVAD 87 (206)
T ss_pred CCHHHHHHHHHHcccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCC
Confidence 34444444443 3567777653 1212221 3456666654 3456777764444433458888999999999985432
Q ss_pred ---cHHHHHHHHhCCCEEEEecCC----HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 99 ---SEELVLEAHSAGVKVVPQVGS----FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 99 ---~~~~i~~~~~~g~~v~~~v~s----~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
+.++++.+++.|++++..+.+ .++++.+.+.|+|+|.+. +...|...+. ..+..+.++++.++ .+++.+
T Consensus 88 ~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~-pg~~~~~~~~-~~~~~i~~l~~~~~--~~~i~v 163 (206)
T TIGR03128 88 DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH-TGLDEQAKGQ-NPFEDLQTILKLVK--EARVAV 163 (206)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc-CCcCcccCCC-CCHHHHHHHHHhcC--CCcEEE
Confidence 246788889999999876532 478888888999999874 3222222121 23456667766653 456777
Q ss_pred ecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 172 AGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 172 aGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.||| +.+++.+++..||+++.+||.++.++
T Consensus 164 ~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~ 193 (206)
T TIGR03128 164 AGGI-NLDTIPDVIKLGPDIVIVGGAITKAA 193 (206)
T ss_pred ECCc-CHHHHHHHHHcCCCEEEEeehhcCCC
Confidence 9999 89999999999999999999987653
No 91
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.27 E-value=1.2e-10 Score=100.38 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=108.3
Q ss_pred cHHHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHH
Q 020013 24 GPELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEEL 102 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~ 102 (332)
..+.+.++.++| +.++.... ..+.+++.+.++++.+.... +++.++++ +..+.+.+.+++.|++...+.+...
T Consensus 14 ~~~~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~-~~~~liin----~~~~la~~~~~dGvHl~~~~~~~~~ 87 (180)
T PF02581_consen 14 FLEQLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQK-YGVPLIIN----DRVDLALELGADGVHLGQSDLPPAE 87 (180)
T ss_dssp HHHHHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHH-TTGCEEEE----S-HHHHHHCT-SEEEEBTTSSSHHH
T ss_pred HHHHHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhc-ceEEEEec----CCHHHHHhcCCCEEEecccccchHH
Confidence 344455554544 77775421 13456667777776654321 22333442 3577888999999999865555555
Q ss_pred HHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH
Q 020013 103 VLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY 181 (332)
Q Consensus 103 i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v 181 (332)
.+.....+..+...+++.++++.+.+.|+||+.+... ..-.|.+.+...+..+.++.+.. ++||++-||| +++++
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI-~~~~i 163 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGI-TPENI 163 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTH
T ss_pred hhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCC-CHHHH
Confidence 5665566788999999999999999999999998443 22223212223477788888777 7999999999 89999
Q ss_pred HHHHHcCcceeeeccc
Q 020013 182 VAALSLGAQGICLGTR 197 (332)
Q Consensus 182 ~~al~~GA~gV~~GT~ 197 (332)
.++.++||+||.+.++
T Consensus 164 ~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 164 PELREAGADGVAVISA 179 (180)
T ss_dssp HHHHHTT-SEEEESHH
T ss_pred HHHHHcCCCEEEEEee
Confidence 9999999999998765
No 92
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.5e-10 Score=108.61 Aligned_cols=192 Identities=20% Similarity=0.277 Sum_probs=133.9
Q ss_pred cCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHH----HHHHHHHHh-hcCCcEEEEeecCCCC--HHH
Q 020013 7 LGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYL----RDLIRKTRS-LTERPFGVGVVLAFPH--NEN 79 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~----~~~i~~~r~-~~~~p~gvnl~~~~~~--~~~ 79 (332)
...+.+++.|||. |+++..+..-+...|+-+...+. +.+...+ ++....... ..+.|+.+++....|. .+.
T Consensus 7 ~~~~~~~~lAPM~-gvtd~~fR~l~~~~ga~~~~~TE-mv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~ea 84 (323)
T COG0042 7 IELRNRVILAPMA-GVTDLPFRRLARELGAYDLLYTE-MVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEA 84 (323)
T ss_pred ccccCcEEEecCC-CCccHHHHHHHHHhCCCceEEEc-cEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHH
Confidence 4457899999998 79999998877775654555543 2222211 111122211 1257899999988762 234
Q ss_pred HHHHHhcCCcEEEEccCCCcHHH-------------------HHHHHhC-C-CEEEEecC---------CHHHHHHHHHc
Q 020013 80 IKAILSEKVAVLQVSWGEYSEEL-------------------VLEAHSA-G-VKVVPQVG---------SFDEARKAVNA 129 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~~~-------------------i~~~~~~-g-~~v~~~v~---------s~~~a~~a~~~ 129 (332)
...+.+.+++.|.+++|+|.+++ ++.+++. + ++|.+++- ..+-++.+.+.
T Consensus 85 A~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~ 164 (323)
T COG0042 85 AKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDA 164 (323)
T ss_pred HHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhc
Confidence 55667788999999999875432 2334443 3 77776542 23456778889
Q ss_pred CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccCcc
Q 020013 130 GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVASEE 203 (332)
Q Consensus 130 g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t~E 203 (332)
|+|.+.|.|+...-.. .....|..|.++++.++ ++|||+.|+|.+++++.+.|+ .|+|||++|...+..+.
T Consensus 165 g~~~ltVHgRtr~~~y-~~~ad~~~I~~vk~~~~--~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~ 236 (323)
T COG0042 165 GADALTVHGRTRAQGY-LGPADWDYIKELKEAVP--SIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPW 236 (323)
T ss_pred CCCEEEEecccHHhcC-CCccCHHHHHHHHHhCC--CCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCc
Confidence 9999999987542211 11256999999999883 399999999999999999998 57999999999886654
No 93
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.27 E-value=1.7e-10 Score=108.79 Aligned_cols=188 Identities=19% Similarity=0.269 Sum_probs=118.9
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C------C-------------HHHHHHHHHHHHh-
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E------A-------------PDYLRDLIRKTRS- 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~------~-------------~e~~~~~i~~~r~- 60 (332)
++.||+.+.= ...+.+.......+ |+|++..++. . . ...++..++++++
T Consensus 55 l~NPi~lAsG--~~~~~~~~~~~~~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~ 131 (335)
T TIGR01036 55 FPNPLGLAAG--FDKDGEAIDALGAM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRA 131 (335)
T ss_pred CCCCcEeCCc--cCCCHHHHHHHHhc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhc
Confidence 5679987542 23466777777766 5666643210 0 0 1123444555543
Q ss_pred hcCCcEEEEeecCC------CCHHHHHHHHhcC--CcEEEEccCCCc-------------HHHHHHHHhC--------CC
Q 020013 61 LTERPFGVGVVLAF------PHNENIKAILSEK--VAVLQVSWGEYS-------------EELVLEAHSA--------GV 111 (332)
Q Consensus 61 ~~~~p~gvnl~~~~------~~~~~~~~~~~~~--~~~I~~~~g~~~-------------~~~i~~~~~~--------g~ 111 (332)
..+.|++||+..+. ..+++.+.+.... +|++.+++.+|. .++++.+++. .+
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~ 211 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRV 211 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCC
Confidence 23578999986652 1245555555444 999998765431 1344444331 27
Q ss_pred EEEEecCC------H-HHHHHHHHcCCCEEEEecC--------------CCCcccCCC---CchhhhHHHHHHHhCCCCC
Q 020013 112 KVVPQVGS------F-DEARKAVNAGVDAIIVQGR--------------EAGGHVIGQ---DGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 112 ~v~~~v~s------~-~~a~~a~~~g~D~ivv~G~--------------eaGGh~~~~---~~~~~ll~~i~~~~~~~~i 167 (332)
+++.+++. . +.++.+.+.|+|+|++.++ +.||.. |+ ...+..+.++.+.+.. ++
T Consensus 212 Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlS-G~~i~p~al~~v~~~~~~~~~-~i 289 (335)
T TIGR01036 212 PVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLS-GKPLQDKSTEIIRRLYAELQG-RL 289 (335)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCccc-CHHHHHHHHHHHHHHHHHhCC-CC
Confidence 88877652 2 3455678899999998663 224433 22 1235566666665532 59
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|||+.|||.+++|+.+++.+||+.||+||+++..
T Consensus 290 piig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~ 323 (335)
T TIGR01036 290 PIIGVGGISSAQDALEKIRAGASLLQIYSGFIYW 323 (335)
T ss_pred CEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHh
Confidence 9999999999999999999999999999999853
No 94
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=99.26 E-value=5.1e-10 Score=98.77 Aligned_cols=166 Identities=22% Similarity=0.337 Sum_probs=115.8
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++| .+||+. .+++.+++..+++.+.++. ...-|.++.+...++..+.+.+.++++|++|
T Consensus 9 Gi~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~---~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLH- 84 (210)
T PRK01222 9 GITTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPP---FVKVVGVFVNASDEEIDEIVETVPLDLLQLH- 84 (210)
T ss_pred CCCcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCC---CCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC-
Confidence 689999999999998 599995 3355677777766665542 2234677887765666777778899999999
Q ss_pred CCCcHHHHHHHHh-CCCEEEEec--CCHHHHHHHH--HcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCCCCc
Q 020013 96 GEYSEELVLEAHS-AGVKVVPQV--GSFDEARKAV--NAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 96 g~~~~~~i~~~~~-~g~~v~~~v--~s~~~a~~a~--~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iP 168 (332)
|..+.++++.+++ .+++++..+ .+..+...+. ...+|+++++.. ..||+ |....|..++ ..+ +.|
T Consensus 85 g~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGt--G~~~dw~~l~---~~~---~~p 156 (210)
T PRK01222 85 GDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGT--GKTFDWSLLP---AGL---AKP 156 (210)
T ss_pred CCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCC--CCccchHHhh---hcc---CCC
Confidence 5567788888876 357776443 3333333322 236899999753 23443 3334566652 122 469
Q ss_pred EEeecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 169 IIAAGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
++.|||| +++|+.+++. .+..||-+-|.+=
T Consensus 157 ~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE 187 (210)
T PRK01222 157 WILAGGL-NPDNVAEAIRQVRPYGVDVSSGVE 187 (210)
T ss_pred EEEECCC-CHHHHHHHHHhcCCCEEEecCceE
Confidence 9999999 8999999997 4899999987764
No 95
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.26 E-value=4.3e-10 Score=103.81 Aligned_cols=193 Identities=21% Similarity=0.296 Sum_probs=121.4
Q ss_pred hhcC--CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------CCCH-------------------HHHHHHH
Q 020013 5 GMLG--FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------WEAP-------------------DYLRDLI 55 (332)
Q Consensus 5 ~~l~--~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------~~~~-------------------e~~~~~i 55 (332)
+++| ++.|++.|.=.. -.+.+...+..+.| +|++..++ +..| ..+...+
T Consensus 5 ~~~Gl~f~NPl~lAaG~~-~~~~~~~~~~~~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~ 82 (310)
T COG0167 5 EILGLKFPNPLGLAAGFD-GKNGEELDALAALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFL 82 (310)
T ss_pred eecceecCCCCeEcccCC-ccCHHHHHHHHhcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHH
Confidence 3455 557998754321 24777778887777 88875422 1111 1133444
Q ss_pred HHHHhhc-C-CcEEEEeecCC----C--CHHHHHHHHhcC-CcEEEEccCCCc----------H----HHHHHHHh-CCC
Q 020013 56 RKTRSLT-E-RPFGVGVVLAF----P--HNENIKAILSEK-VAVLQVSWGEYS----------E----ELVLEAHS-AGV 111 (332)
Q Consensus 56 ~~~r~~~-~-~p~gvnl~~~~----~--~~~~~~~~~~~~-~~~I~~~~g~~~----------~----~~i~~~~~-~g~ 111 (332)
++++... . .|.++|+..+. . ..+++..+.+.+ +|++.++..+|. . ++++.+++ ..+
T Consensus 83 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~ 162 (310)
T COG0167 83 EELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKV 162 (310)
T ss_pred HHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccC
Confidence 4433221 1 24555554432 1 244555666666 899998765542 1 23334443 357
Q ss_pred EEEEecC-CHH----HHHHHHHcCCCEEEEecC------------------CCCcccCCC---CchhhhHHHHHHHhCCC
Q 020013 112 KVVPQVG-SFD----EARKAVNAGVDAIIVQGR------------------EAGGHVIGQ---DGLISLLPMVVDLIGDR 165 (332)
Q Consensus 112 ~v~~~v~-s~~----~a~~a~~~g~D~ivv~G~------------------eaGGh~~~~---~~~~~ll~~i~~~~~~~ 165 (332)
+|+.+++ +.+ -|+.+.+.|+|+|++.++ +.||-. |+ ...+..+.++.+.+..
T Consensus 163 Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS-G~~ikp~al~~v~~l~~~~~~- 240 (310)
T COG0167 163 PVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS-GPPLKPIALRVVAELYKRLGG- 240 (310)
T ss_pred ceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC-cccchHHHHHHHHHHHHhcCC-
Confidence 8888776 343 355678899999998663 123332 22 1246677788877643
Q ss_pred CCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 166 DIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
++|||..|||.|++|+.+.+.+||+.||+||+++.-
T Consensus 241 ~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~ 276 (310)
T COG0167 241 DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK 276 (310)
T ss_pred CCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee
Confidence 699999999999999999999999999999998855
No 96
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.25 E-value=6.6e-11 Score=110.56 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=109.5
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHH----HHHHHhh-cCCcEEEEeecCCCC--HHHHHHHHhc
Q 020013 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDL----IRKTRSL-TERPFGVGVVLAFPH--NENIKAILSE 86 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~----i~~~r~~-~~~p~gvnl~~~~~~--~~~~~~~~~~ 86 (332)
|.|||. |+|+..+...+.+.|+-++..++ +.+.+.+-.. ...+... .+.|+.++|+.+++. .+..+.+.+.
T Consensus 1 ~LAPM~-g~td~~fR~l~~~~g~~~~~~te-mi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~ 78 (309)
T PF01207_consen 1 ILAPMA-GVTDLPFRRLCREFGADDLTYTE-MISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAEL 78 (309)
T ss_dssp -E---T-TTSSHHHHHHHHCCTSSSBEE-S--EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCT
T ss_pred CccCCC-CCchHHHHHHHHHHCCCeEEEcC-CEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhcc
Confidence 468998 79999999988888877666664 4444332211 1112111 246899999998762 1223333445
Q ss_pred CCcEEEEccCCCcHHH-------------------HHHHHh-CCCEEEEecC---------CHHHHHHHHHcCCCEEEEe
Q 020013 87 KVAVLQVSWGEYSEEL-------------------VLEAHS-AGVKVVPQVG---------SFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~-------------------i~~~~~-~g~~v~~~v~---------s~~~a~~a~~~g~D~ivv~ 137 (332)
+++.|.+++|+|.+.+ ++.+++ .+++|-+++- +.+-++.+.++|+|.|.+.
T Consensus 79 ~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH 158 (309)
T PF01207_consen 79 GFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVH 158 (309)
T ss_dssp T-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEe
Confidence 8999999999875433 233333 4677776542 2345667788999999999
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccCcc
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASEE 203 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t~E 203 (332)
|+...-.. .....|+.+.++++.+ ++|||+.|||.+.+++.+.+.. |+|||++|+..+..+-
T Consensus 159 ~Rt~~q~~-~~~a~w~~i~~i~~~~---~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~ 221 (309)
T PF01207_consen 159 GRTRKQRY-KGPADWEAIAEIKEAL---PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPW 221 (309)
T ss_dssp CS-TTCCC-TS---HHHHHHCHHC----TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CC
T ss_pred cCchhhcC-CcccchHHHHHHhhcc---cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCH
Confidence 87432221 2246799999999988 7999999999999999999986 9999999999887643
No 97
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.25 E-value=5.4e-10 Score=98.50 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=113.9
Q ss_pred cHHHHHHHHhCC--Cceeec-CCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC-
Q 020013 24 GPELVAAVANAG--GLGLLR-APDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY- 98 (332)
Q Consensus 24 ~~~la~avs~aG--glG~i~-~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~- 98 (332)
..+.+.++.++| .+++.. .+.+ .+...--+.++++++.++.|+-+.+++..+ .++++.+.+.|++.|++|.+.+
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~-~~~~~~~~~~gadgv~vh~~~~~ 91 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP-DRYIEDFAEAGADIITVHPEASE 91 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEccCCch
Confidence 456677777777 355531 0001 011112244566665556677788888765 5778888999999999995431
Q ss_pred -cHHHHHHHHhCCCEEEEe--cCCHHHHHHHHHcCCCEEEEecCCCCcccCC-CCchhhhHHHHHHHhCC--CCCcEEee
Q 020013 99 -SEELVLEAHSAGVKVVPQ--VGSFDEARKAVNAGVDAIIVQGREAGGHVIG-QDGLISLLPMVVDLIGD--RDIPIIAA 172 (332)
Q Consensus 99 -~~~~i~~~~~~g~~v~~~--v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~-~~~~~~ll~~i~~~~~~--~~iPviaa 172 (332)
+...++.+++.|+.++.. .++..+..+.+..++|+|.+.+...|+.... ....+..+.++++...+ .++|++++
T Consensus 92 ~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~ 171 (210)
T TIGR01163 92 HIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD 171 (210)
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 224556677778776554 4455666666667899988765544332101 12234555556554421 13799999
Q ss_pred cCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 173 GGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 173 GGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
||| +.+++.+++..|||++++||+++.++
T Consensus 172 GGI-~~env~~l~~~gad~iivgsai~~~~ 200 (210)
T TIGR01163 172 GGV-NDDNARELAEAGADILVAGSAIFGAD 200 (210)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEChHHhCCC
Confidence 999 78999999999999999999998543
No 98
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.24 E-value=6.6e-10 Score=103.19 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=116.7
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC--------------------------C--CCHHHHHHHHHHHHh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD--------------------------W--EAPDYLRDLIRKTRS 60 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~--------------------------~--~~~e~~~~~i~~~r~ 60 (332)
++.||+.|.=. .-.+.+....+..+ |+|++..++ + ...+...+.+++.+.
T Consensus 8 l~nPi~~Asg~-~~~~~e~~~~~~~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~~~ 85 (294)
T cd04741 8 ISPPLMNAAGP-WCTTLEDLLELAAS-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTISD 85 (294)
T ss_pred CCCCCEECCCC-CCCCHHHHHHHHHc-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHHhh
Confidence 67899977743 23677888877775 566663321 0 012333444444332
Q ss_pred h---cCCcEEEEeecCCCCHHHHH---HHHhc---CCcEEEEccCCCc-----------H---HHHHHHHhC-CCEEEEe
Q 020013 61 L---TERPFGVGVVLAFPHNENIK---AILSE---KVAVLQVSWGEYS-----------E---ELVLEAHSA-GVKVVPQ 116 (332)
Q Consensus 61 ~---~~~p~gvnl~~~~~~~~~~~---~~~~~---~~~~I~~~~g~~~-----------~---~~i~~~~~~-g~~v~~~ 116 (332)
. .+.|+.+++... + ++.++ .+.+. ++|+|.++.++|. + ++++.+++. .++|+.+
T Consensus 86 ~~~~~~~pvivsi~g~-~-~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 86 GLPGSAKPFFISVTGS-A-EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred hccccCCeEEEECCCC-H-HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 468999999876 3 44433 33343 5899999877642 2 234445543 6888887
Q ss_pred cC---CHH----HHHHHHHc--CCCEEEEecCCC--------------------CcccCCCC---chhhhHHHHHHHhCC
Q 020013 117 VG---SFD----EARKAVNA--GVDAIIVQGREA--------------------GGHVIGQD---GLISLLPMVVDLIGD 164 (332)
Q Consensus 117 v~---s~~----~a~~a~~~--g~D~ivv~G~ea--------------------GGh~~~~~---~~~~ll~~i~~~~~~ 164 (332)
++ +.+ .+..+.+. |+|+|++.++-. ||.. |+. ..+..+.++++.++.
T Consensus 164 l~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~S-G~~i~~~al~~v~~~~~~~~~ 242 (294)
T cd04741 164 TPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLA-GAYLHPLALGNVRTFRRLLPS 242 (294)
T ss_pred eCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcC-chhhHHHHHHHHHHHHHhcCC
Confidence 75 222 23334466 899999643321 1221 111 124555666666631
Q ss_pred CCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 165 RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 165 ~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
++|||+.|||.+++|+.+++.+|||+||++|+++.
T Consensus 243 -~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 243 -EIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred -CCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 49999999999999999999999999999999986
No 99
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.24 E-value=3.7e-10 Score=99.14 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=108.4
Q ss_pred CCceeecCC-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEE
Q 020013 35 GGLGLLRAP-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKV 113 (332)
Q Consensus 35 GglG~i~~~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v 113 (332)
+|+-.+... ...+.+.+.+.++++++... + +..++++ +..+.+.+.+++.++++..+.+.+.+++.. .+..+
T Consensus 26 ~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~-~-~~~liin----~~~~la~~~~~~gvHl~~~~~~~~~~r~~~-~~~~i 98 (201)
T PRK07695 26 SEVDYIHIREREKSAKELYEGVESLLKKGV-P-ASKLIIN----DRVDIALLLNIHRVQLGYRSFSVRSVREKF-PYLHV 98 (201)
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHhCC-C-CCeEEEE----CHHHHHHHcCCCEEEeCcccCCHHHHHHhC-CCCEE
Confidence 455666542 12356677777777775422 2 2345664 347788899999999986554433333221 36778
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEec-CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQG-REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G-~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
...+++.+++..+.+.|+|++++.. +....+.+.+...+..++++.+.+ ++||++.||| +++++.+++..||++|
T Consensus 99 g~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 99 GYSVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 8899999999999999999997621 111112111122366777777765 7999999999 9999999999999999
Q ss_pred eeccccccCc
Q 020013 193 CLGTRFVASE 202 (332)
Q Consensus 193 ~~GT~fl~t~ 202 (332)
.+|+.++.+.
T Consensus 175 av~s~i~~~~ 184 (201)
T PRK07695 175 AVMSGIFSSA 184 (201)
T ss_pred EEEHHHhcCC
Confidence 9999998653
No 100
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.23 E-value=9.7e-10 Score=99.88 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhh-cCCcEEEEeecCCC-----CHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEec
Q 020013 47 APDYLRDLIRKTRSL-TERPFGVGVVLAFP-----HNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQV 117 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~-----~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v 117 (332)
+.+.+-+.++++|+. ++.|+- .+++.++ .+++++.+.++|++.+.++ ..+. .++++.+++.|+..+..+
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip-Dlp~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA-DLPLEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEEC-CCChHHHHHHHHHHHHCCCcEEEEE
Confidence 445566777788754 567865 5554443 2677889999999999998 3333 356677888898755333
Q ss_pred ---CCHHHHHHHHHcCCCEEEEecCC-CCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 118 ---GSFDEARKAVNAGVDAIIVQGRE-AGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 118 ---~s~~~a~~a~~~g~D~ivv~G~e-aGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
++.+..+...+..-++|.+-... .+|... -......++.++++.. +.||++.|||++++++.+++.+|||||
T Consensus 148 ~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 148 APNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 34555555444432244443322 223210 1124577788887765 689999999999999999999999999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
++||+++..-|
T Consensus 225 VvGSaiv~~~~ 235 (256)
T TIGR00262 225 IVGSAIVKIIE 235 (256)
T ss_pred EECHHHHHHHH
Confidence 99999986443
No 101
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=99.22 E-value=4.3e-10 Score=109.52 Aligned_cols=160 Identities=20% Similarity=0.240 Sum_probs=116.5
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+.+++++| .+||+. ++++.+++..+++.+.+. .--|.++++.+.++..+.+.+.++|+|++|
T Consensus 263 Git~~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~-----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH- 336 (454)
T PRK09427 263 GLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP-----LRYVGVFRNADIEDIVDIAKQLSLAAVQLH- 336 (454)
T ss_pred CCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC-----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC-
Confidence 688999999999998 599985 345677888777766553 234778888775666677778899999999
Q ss_pred CCCcHHHHHHHHhC---CCEEEEecC--CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE
Q 020013 96 GEYSEELVLEAHSA---GVKVVPQVG--SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII 170 (332)
Q Consensus 96 g~~~~~~i~~~~~~---g~~v~~~v~--s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi 170 (332)
|..++++++.+++. ++++|..+. +... .....++|+++++. ..||. |....|.+++.. . ..|++
T Consensus 337 G~e~~~~~~~l~~~~~~~~~iikai~v~~~~~--~~~~~~~d~~LlDs-~~GGt--G~~~DW~~l~~~---~---~~p~i 405 (454)
T PRK09427 337 GDEDQAYIDALREALPKTCQIWKAISVGDTLP--ARDLQHVDRYLLDN-GQGGT--GQTFDWSLLPGQ---S---LDNVL 405 (454)
T ss_pred CCCCHHHHHHHHhhcCCCCeEEEEeecCchhh--hhhhcCCCEEEEcC-CCCCC--CCccChHHhhhc---c---cCCEE
Confidence 66678888888763 466775433 2222 12234689999985 33443 344557766532 2 46999
Q ss_pred eecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 171 AAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 171 aaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.|||| +++|+.+++..+..||-+-|.+
T Consensus 406 LAGGL-~peNV~~ai~~~P~gVDVsSGV 432 (454)
T PRK09427 406 LAGGL-NPDNCQQAAQLGCAGLDFNSGV 432 (454)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCCcc
Confidence 99999 8999999999999999998876
No 102
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.22 E-value=3.2e-10 Score=106.84 Aligned_cols=188 Identities=23% Similarity=0.279 Sum_probs=120.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC--------C------CH-------------HHHHHHHHHHHhh
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW--------E------AP-------------DYLRDLIRKTRSL 61 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~--------~------~~-------------e~~~~~i~~~r~~ 61 (332)
++.||+.+.= ...+.+......++| +|++..++. . .+ ..++..++++++.
T Consensus 48 l~nPi~~AsG--~~~~~~~~~~~~~~G-~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~ 124 (327)
T cd04738 48 FPNPVGLAAG--FDKNAEAIDALLALG-FGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKR 124 (327)
T ss_pred CCCCCEeCcC--CCCCHHHHHHHHHCC-CcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHh
Confidence 6679987652 234667777776654 455432110 0 00 0123344444432
Q ss_pred --cCCcEEEEeecCCC------CHHHHHHHHhc--CCcEEEEccCCCcH-------------HHHHHHHhC-C-----CE
Q 020013 62 --TERPFGVGVVLAFP------HNENIKAILSE--KVAVLQVSWGEYSE-------------ELVLEAHSA-G-----VK 112 (332)
Q Consensus 62 --~~~p~gvnl~~~~~------~~~~~~~~~~~--~~~~I~~~~g~~~~-------------~~i~~~~~~-g-----~~ 112 (332)
.+.|+++|+..+.. .+++.+.+.+. .+|++.+++++|.. ++++.+++. . ++
T Consensus 125 ~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P 204 (327)
T cd04738 125 RPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP 204 (327)
T ss_pred ccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC
Confidence 36899999987642 13444444333 48999998876521 445555542 2 78
Q ss_pred EEEecC---C----HHHHHHHHHcCCCEEEEecCC--------------CCcccCCCC---chhhhHHHHHHHhCCCCCc
Q 020013 113 VVPQVG---S----FDEARKAVNAGVDAIIVQGRE--------------AGGHVIGQD---GLISLLPMVVDLIGDRDIP 168 (332)
Q Consensus 113 v~~~v~---s----~~~a~~a~~~g~D~ivv~G~e--------------aGGh~~~~~---~~~~ll~~i~~~~~~~~iP 168 (332)
++.+++ + .+.++.+.++|+|+|++.+.- .||.. ++. ..+..+.++++.+.. ++|
T Consensus 205 v~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s-G~~~~~~~l~~v~~l~~~~~~-~ip 282 (327)
T cd04738 205 LLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS-GAPLKERSTEVLRELYKLTGG-KIP 282 (327)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC-ChhhhHHHHHHHHHHHHHhCC-CCc
Confidence 887775 2 233456778999999987741 23443 221 236777888877642 599
Q ss_pred EEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 169 IIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 169 viaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|++.|||.|++++.+++.+|||+|++||+++..
T Consensus 283 Ii~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~ 315 (327)
T cd04738 283 IIGVGGISSGEDAYEKIRAGASLVQLYTGLVYE 315 (327)
T ss_pred EEEECCCCCHHHHHHHHHcCCCHHhccHHHHhh
Confidence 999999999999999999999999999999854
No 103
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=99.22 E-value=5.4e-11 Score=104.10 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=104.4
Q ss_pred CCCcHHHHHHHHhCCC--ceeecCC---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAGG--LGLLRAP---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aGg--lG~i~~~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++|. +||+..+ ++.+++.++++.+.+ . |.-|+++.+.+.++.++.+.+.++|+|++|
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~----~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQLH- 78 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAV----P-PKIVGVFVNQSPEEILEIVEELGLDVVQLH- 78 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCS----S-SSEEEEESSS-HHHHHHHHHHCTESEEEE--
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhc----C-CCEEEEEcCCCHHHHHHHHHHcCCCEEEEC-
Confidence 5789999999999986 9999754 334555544443332 2 347888998876777888888999999999
Q ss_pred CCCcHHHHHHHHhCCCEEEEec--C-CHHHHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe
Q 020013 96 GEYSEELVLEAHSAGVKVVPQV--G-SFDEARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA 171 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~~~v--~-s~~~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia 171 (332)
|..+.++++.++ .+.+++..+ . +.+....+... .+|++++++ ..||. |....|.+++.+.+... +.|++.
T Consensus 79 G~e~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~-~~Ggt--G~~~dw~~~~~~~~~~~--~~p~iL 152 (197)
T PF00697_consen 79 GDESPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDS-GSGGT--GKTFDWSLLKKIVESYS--PKPVIL 152 (197)
T ss_dssp SGG-HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEES-SSTSS--SS---GGGGCCCHHT-G--TSTEEE
T ss_pred CCCCHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEcc-CCCcC--CcccCHHHhhhhhhhcc--cCcEEE
Confidence 666778888877 466666432 2 22222222222 239999993 33443 34456888877766322 589999
Q ss_pred ecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 172 AGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 172 aGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
|||| +++|+.+++. .+..||-+-|.+=
T Consensus 153 AGGl-~p~NV~~ai~~~~p~gvDvsSGvE 180 (197)
T PF00697_consen 153 AGGL-NPENVREAIRQVRPYGVDVSSGVE 180 (197)
T ss_dssp ESS---TTTHHHHHHHC--SEEEESGGGE
T ss_pred EcCC-ChHHHHHHHHhcCceEEEeCCccc
Confidence 9999 8999999999 8999999988753
No 104
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.21 E-value=6.7e-10 Score=97.84 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=101.8
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC--CHHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG--SFDEARKAVN 128 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~~ 128 (332)
+.++++++.++.|+.+.++++++ .+.++.+.+.|+|.|++|.+. .+.+.++.+++.++.++..++ +..+..+...
T Consensus 47 ~~~~~i~~~~~~~~~v~l~~~d~-~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 125 (211)
T cd00429 47 PVVKALRKHTDLPLDVHLMVENP-ERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYL 125 (211)
T ss_pred HHHHHHHhhCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHH
Confidence 45566665556788899998755 567888899999999998543 223566777788988887764 2333334444
Q ss_pred cCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 129 AGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.++|++.+.+...|+... .....+..+.++++... ..++||+++||| +.+++.+++..|||+|++||+++..+
T Consensus 126 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI-~~env~~~~~~gad~iivgsai~~~~ 201 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGI-NLETIPLLAEAGADVLVAGSALFGSD 201 (211)
T ss_pred hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCCC
Confidence 559999886654333210 11123445555555441 013899999999 67999999999999999999998653
No 105
>PLN02591 tryptophan synthase
Probab=99.20 E-value=9.5e-10 Score=99.22 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEecC-
Q 020013 47 APDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQVG- 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v~- 118 (332)
+.+.+-++++++|+..+.|+.+ |.+.....+++++.+.+.|++.+.+. +.+++ ++.+.+++.|+..+..++
T Consensus 62 ~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip-DLP~ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 62 TLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP-DLPLEETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4455667777777655667542 33222234678899999999999987 44433 466777889998776652
Q ss_pred --CHHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 119 --SFDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 119 --s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+.+..+...+..-++|-+.+. ...|.... +.....++..+++.. ++||+...||++++++.+++..|||||++
T Consensus 141 tt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~Pv~vGFGI~~~e~v~~~~~~GADGvIV 217 (250)
T PLN02591 141 TTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT---DKPVAVGFGISKPEHAKQIAGWGADGVIV 217 (250)
T ss_pred CCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC---CCceEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 234455555555566655442 12232212 223455566777654 89999999999999999999999999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
||+|+..-+
T Consensus 218 GSalVk~i~ 226 (250)
T PLN02591 218 GSAMVKALG 226 (250)
T ss_pred CHHHHHhhh
Confidence 999986443
No 106
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=99.20 E-value=1.3e-09 Score=98.10 Aligned_cols=139 Identities=21% Similarity=0.373 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc---------cCC---CcHHHHHHHHh--CCCEEEEe
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS---------WGE---YSEELVLEAHS--AGVKVVPQ 116 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~---------~g~---~~~~~i~~~~~--~g~~v~~~ 116 (332)
+...+.+++.....|+|||++-+.+ ...+.++...++++|-.. .|. ...++.+.-+. ..++++..
T Consensus 67 m~~i~~~v~~~~~~p~GvnvL~nd~-~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~ad 145 (257)
T TIGR00259 67 MAVIAGQLKSDVSIPLGINVLRNDA-VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILAD 145 (257)
T ss_pred HHHHHHHHHHhcCCCeeeeeecCCC-HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEec
Confidence 4455566777777899999998766 567888999999998652 121 12233333322 46788765
Q ss_pred cC----------CHHH-HHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 117 VG----------SFDE-ARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 117 v~----------s~~~-a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
+. ++++ ++.+...+ +|+|++.|... |....+..+.++++... ++||+.+||| +++|+.++
T Consensus 146 V~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~T-----G~~~d~~~l~~vr~~~~--~~PvllggGv-t~eNv~e~ 217 (257)
T TIGR00259 146 IVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTT-----GTEVDLELLKLAKETVK--DTPVLAGSGV-NLENVEEL 217 (257)
T ss_pred eeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCC-----CCCCCHHHHHHHHhccC--CCeEEEECCC-CHHHHHHH
Confidence 42 4444 55556555 99999987633 33456888888877553 6899999999 89999999
Q ss_pred HHcCcceeeeccccc
Q 020013 185 LSLGAQGICLGTRFV 199 (332)
Q Consensus 185 l~~GA~gV~~GT~fl 199 (332)
+.. |||+.+||.|=
T Consensus 218 l~~-adGviVgS~~K 231 (257)
T TIGR00259 218 LSI-ADGVIVATTIK 231 (257)
T ss_pred Hhh-CCEEEECCCcc
Confidence 998 99999999976
No 107
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.20 E-value=1e-09 Score=96.96 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=112.1
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+..+.++| +..+.... ..+.+.+.+...+++.... .+++.++++ +.++.+.+.+++.|+++..+.+....+
T Consensus 23 ~~l~~~l~~G-~~~vqLR~k~~~~~~~~~la~~l~~~~~-~~~~~liIn----d~~~lA~~~~adGVHlg~~d~~~~~~r 96 (211)
T PRK03512 23 QWIERLLDAG-VRTLQLRIKDRRDEEVEADVVAAIALGR-RYQARLFIN----DYWRLAIKHQAYGVHLGQEDLETADLN 96 (211)
T ss_pred HHHHHHHhCC-CCEEEEcCCCCCHHHHHHHHHHHHHHHH-HhCCeEEEe----CHHHHHHHcCCCEEEcChHhCCHHHHH
Confidence 4555555555 56665421 1345556666666554432 245666664 457888889999999975444433444
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
.+...+..+...+++.+++..+.+.|+||+.+... ..-.|.+ .+...+..+.++.+... ++||++-||| +.+|+.
T Consensus 97 ~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~--~~PV~AiGGI-~~~ni~ 173 (211)
T PRK03512 97 AIRAAGLRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLA--DYPTVAIGGI-SLERAP 173 (211)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCC-CHHHHH
Confidence 44344667788999999999999999999998332 1112221 11122445566555421 6999999999 899999
Q ss_pred HHHHcCcceeeeccccccCc
Q 020013 183 AALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~ 202 (332)
+++..||+||.+-+.++.++
T Consensus 174 ~l~~~Ga~GiAvisai~~~~ 193 (211)
T PRK03512 174 AVLATGVGSIAVVSAITQAA 193 (211)
T ss_pred HHHHcCCCEEEEhhHhhCCC
Confidence 99999999999999999654
No 108
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=99.20 E-value=1.7e-10 Score=103.85 Aligned_cols=111 Identities=32% Similarity=0.383 Sum_probs=92.3
Q ss_pred HHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH
Q 020013 103 VLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR 179 (332)
Q Consensus 103 i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~ 179 (332)
++.++.. ...|+..+-+.++|+.|.+.|+++|+|.+. ||.. +....++..+|++++++.+ ++||+..|||.++.
T Consensus 215 i~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNH--GgRQlD~vpAtI~~L~Evv~aV~~-ri~V~lDGGVR~G~ 291 (363)
T KOG0538|consen 215 IKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNH--GGRQLDYVPATIEALPEVVKAVEG-RIPVFLDGGVRRGT 291 (363)
T ss_pred hHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCC--CccccCcccchHHHHHHHHHHhcC-ceEEEEecCcccch
Confidence 3444442 345567788999999999999999999887 4533 3345779999999999975 79999999999999
Q ss_pred HHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 180 GYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 180 ~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
|+.+||++||.+|.+|..++..--|......++.|.=
T Consensus 292 DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~i 328 (363)
T KOG0538|consen 292 DVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDI 328 (363)
T ss_pred HHHHHHhcccceEEecCchheeeccccchhHHHHHHH
Confidence 9999999999999999999999888888888777653
No 109
>PLN02363 phosphoribosylanthranilate isomerase
Probab=99.19 E-value=1.1e-09 Score=99.09 Aligned_cols=167 Identities=18% Similarity=0.167 Sum_probs=113.5
Q ss_pred CCCcHHHHHHHHhCC--CceeecC---CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc
Q 020013 21 DISGPELVAAVANAG--GLGLLRA---PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW 95 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~~---~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~ 95 (332)
|+++++.+..++++| .+||+.. +++.+++..+++.+.++.. ...-|.++++.+.++..+.+.+.++|+|++|
T Consensus 53 Git~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~--~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH- 129 (256)
T PLN02363 53 GITSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAREG--GAKPVGVFVDDDANTILRAADSSDLELVQLH- 129 (256)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhcccc--CccEEEEEeCCCHHHHHHHHHhcCCCEEEEC-
Confidence 688999999999998 5999953 4567888887777765421 1124777887775666777778899999999
Q ss_pred CCCcHHHHHHHHhCCCEEEEec--CCHHH-HHHHH---HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE
Q 020013 96 GEYSEELVLEAHSAGVKVVPQV--GSFDE-ARKAV---NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI 169 (332)
Q Consensus 96 g~~~~~~i~~~~~~g~~v~~~v--~s~~~-a~~a~---~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv 169 (332)
|....++++.++. .+++|..+ .+..+ ..... ...+|+++++... ||. |....|..++.. . +. ...|+
T Consensus 130 G~e~~~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~-GGt--G~t~DW~~l~~~-~-~~-~~~p~ 202 (256)
T PLN02363 130 GNGSRAAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSAT-GGS--GKGFNWQNFKLP-S-VR-SRNGW 202 (256)
T ss_pred CCCCHHHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCC-CCC--CCccCHHHhccc-c-cc-cCCCE
Confidence 5566777777764 35565433 22222 11121 2358999998643 443 333446555310 1 11 14699
Q ss_pred EeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 170 IAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 170 iaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
|.|||| +++|+.+++. .+..||-+-|.+
T Consensus 203 iLAGGL-~peNV~~ai~~~~P~GVDVsSGV 231 (256)
T PLN02363 203 LLAGGL-TPENVHEAVSLLKPTGVDVSSGI 231 (256)
T ss_pred EEECCC-CHHHHHHHHHhcCCcEEEeCCcc
Confidence 999999 8999999987 689999997776
No 110
>PRK08005 epimerase; Validated
Probab=99.19 E-value=1.1e-09 Score=96.10 Aligned_cols=141 Identities=14% Similarity=0.184 Sum_probs=106.8
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC---CHHHHHHHHH
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG---SFDEARKAVN 128 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~~ 128 (332)
.++.+|+.++.|+-|++++..| +.+++.+.+.|++.|.+|+.. .+.+.++.+|+.|++....+. +++.....+.
T Consensus 49 ~i~~l~~~t~~~~DvHLMv~~P-~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 49 TIQAVAQQTRHPLSFHLMVSSP-QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred HHHHHHhcCCCCeEEEeccCCH-HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH
Confidence 4667777788999999999887 678999999999999999752 345788999999999775543 4455544433
Q ss_pred cCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 129 AGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 129 ~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
-+|.|.+-. +..||+. -....+..+.++++..+ +..+.+.||| +.+++..+.++|||.+++||+++.
T Consensus 128 -~vD~VlvMsV~PGf~GQ~-f~~~~~~KI~~l~~~~~--~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 128 -QLDALMIMTSEPDGRGQQ-FIAAMCEKVSQSREHFP--AAECWADGGI-TLRAARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred -hcCEEEEEEecCCCccce-ecHHHHHHHHHHHHhcc--cCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhC
Confidence 689998843 4445554 22345666666666553 3469999999 899999999999999999999774
No 111
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.18 E-value=1.2e-09 Score=96.87 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=107.1
Q ss_pred HHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH
Q 020013 54 LIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG---SFDEARKAV 127 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~ 127 (332)
.++.+|+. ++.|+-|++++..| +.+++.+.+.|++.|.+|+.. .+.+.++.+|+.|++....+. +++.....+
T Consensus 52 ~i~~lr~~~~~~~~dvHLMv~~P-~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l 130 (223)
T PRK08745 52 VCQALRKHGITAPIDVHLMVEPV-DRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVL 130 (223)
T ss_pred HHHHHHhhCCCCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHH
Confidence 46777777 68999999999877 678999999999999999752 245788999999998765442 344444443
Q ss_pred HcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 128 NAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 128 ~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.-+|.|++- .+..||+. -....+..+.++++..++ .++.|-++||| +.+++..+.++|||.+++||++...
T Consensus 131 -~~vD~VlvMtV~PGf~GQ~-fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 131 -PELDLVLVMSVNPGFGGQA-FIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred -hhcCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCC
Confidence 368999884 44445554 223456666666655432 24669999999 8999999999999999999997653
No 112
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.16 E-value=1.9e-09 Score=98.04 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEecC--
Q 020013 48 PDYLRDLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQVG-- 118 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v~-- 118 (332)
.+.+-+.++++|+..+.|+.+ |.+.....+++++.+.+.|+|.+.++ ..+++ ++.+.+++.|+..+..++
T Consensus 76 ~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviip-DLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 76 LNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIP-DLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 344556667777555667532 33222234678999999999999998 44333 456778888987765443
Q ss_pred C-HHHHHHHHHcCCCEEEEe-cCCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 119 S-FDEARKAVNAGVDAIIVQ-GREAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 119 s-~~~a~~a~~~g~D~ivv~-G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
| .+..+...+..-.+|.+. -...+|.... ......++..+++.. +.|+...+||++++++.++...|||||++|
T Consensus 155 T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t---~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT---NKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 4 444444444433355442 2333443211 122355566666644 799999999999999999999999999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
|+|+..-+
T Consensus 232 Salv~~i~ 239 (263)
T CHL00200 232 SACVQILL 239 (263)
T ss_pred HHHHHHHH
Confidence 99975433
No 113
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.16 E-value=1e-09 Score=99.08 Aligned_cols=173 Identities=20% Similarity=0.263 Sum_probs=122.2
Q ss_pred CCCcHHHHHHHHhCCCceeecCC-------------CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAP-------------DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~-------------~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+++++-+.-...+|...+.... +..+|+. |+++++.++.|+-.-.-. .+....+.+.+.|
T Consensus 23 dv~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~----I~aIk~~V~iPVigk~Ri--gh~~Ea~~L~~~G 96 (293)
T PRK04180 23 DVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKM----IEEIMDAVSIPVMAKARI--GHFVEAQILEALG 96 (293)
T ss_pred EeCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHH----HHHHHHhCCCCeEEeehh--hHHHHHHHHHHcC
Confidence 37889888877778865544321 1234554 446666667886542211 1234567788899
Q ss_pred CcEEEEccC-CCcHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCccc-----------------CC-
Q 020013 88 VAVLQVSWG-EYSEELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-----------------IG- 147 (332)
Q Consensus 88 ~~~I~~~~g-~~~~~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-----------------~~- 147 (332)
+|+|.-+-= .|..+++...|. .++++++.+.+.+|+.++.+.|+|.|--.|--+.|.. .+
T Consensus 97 vDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 97 VDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred CCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCC
Confidence 999964311 123356666665 4899999999999999999999999977654222210 00
Q ss_pred -----------CCchhhhHHHHHHHhCCCCCcEE--eecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 148 -----------QDGLISLLPMVVDLIGDRDIPII--AAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 148 -----------~~~~~~ll~~i~~~~~~~~iPvi--aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
....+.+|.++++.. ++||+ +.|||.+++++..++.+||++|.+||+++.+.
T Consensus 177 t~~~~~~~a~~~~~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 177 SEDELYTAAKELQAPYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG 241 (293)
T ss_pred CHHHHHhhccccCCCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence 113577888888866 79998 99999999999999999999999999999654
No 114
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.15 E-value=1.5e-09 Score=103.93 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=117.9
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+..+.++ |+..+.... ..+.+++.+.+++++++++ .+++.+++| +.++.+++.+++.|+++..+.+....+
T Consensus 221 ~~ve~aL~a-Gv~~VQLReK~ls~~el~~la~~l~~l~~-~~gv~LiIN----D~~dlAl~~gAdGVHLGQeDL~~~~aR 294 (437)
T PRK12290 221 EWIERLLPL-GINTVQLRIKDPQQADLEQQIIRAIALGR-EYNAQVFIN----DYWQLAIKHQAYGVHLGQEDLEEANLA 294 (437)
T ss_pred HHHHHHHhC-CCCEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEE----CHHHHHHHcCCCEEEcChHHcchhhhh
Confidence 455555554 456665421 1345567777777776654 356777774 468899999999999986544444455
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccC-CCCchhhhHHHHHHHhC------CCCCcEEeecCcC
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVI-GQDGLISLLPMVVDLIG------DRDIPIIAAGGIV 176 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~-~~~~~~~ll~~i~~~~~------~~~iPviaaGGI~ 176 (332)
.+...+..+...+++.+|+.++.+.|+|||.+-.. ....|.. .+.-.+..+.++++.+. ..++||++.|||
T Consensus 295 ~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI- 373 (437)
T PRK12290 295 QLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI- 373 (437)
T ss_pred hhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-
Confidence 55556788889999999999999999999998221 1111210 11122555655555432 126999999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+|+.++++.||+||.+-|+++.++
T Consensus 374 ~~~Ni~~vl~aGa~GVAVVSAI~~A~ 399 (437)
T PRK12290 374 DQSNAEQVWQCGVSSLAVVRAITLAE 399 (437)
T ss_pred CHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 89999999999999999999998654
No 115
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=99.14 E-value=2.1e-09 Score=95.65 Aligned_cols=144 Identities=16% Similarity=0.222 Sum_probs=106.2
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC---CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE---YSEELVLEAHSAGVKVVPQVG---SFDEARKAV 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~---~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~ 127 (332)
.++.+|+.++.|+-|++++..| +.+++.+.++|++.|.+|+.. .+.+.++.+|+.|++....+. +++.....+
T Consensus 50 ~i~~ir~~t~~~~DvHLMv~~P-~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 50 FVSQVKKLASKPLDVHLMVTDP-QDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYI 128 (229)
T ss_pred HHHHHHhcCCCCeEEEEEecCH-HHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 4667777788999999999887 678999999999999999762 355788999999998765442 444444444
Q ss_pred HcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 128 NAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 128 ~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
. -+|.|.+-. +..||+. -....+..+.++++..++ .++-+.+.||| +.+++..+.++|||.+++||..++.
T Consensus 129 ~-~vD~VLvMsV~PGf~GQ~-fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 129 H-LLDKITVMTVDPGFAGQP-FIPEMLDKIAELKALRERNGLEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred H-hcCEEEEEEEcCCCcchh-ccHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEChHHHcC
Confidence 4 589998843 4445544 223456666666655432 24669999999 7899999999999999999764443
No 116
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.14 E-value=2.8e-09 Score=96.78 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHH-hhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEecC-
Q 020013 48 PDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQVG- 118 (332)
Q Consensus 48 ~e~~~~~i~~~r-~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v~- 118 (332)
.+.+-+.++++| ...+.|+.+ |.+.....+++++.+.+.|++.+.+. +.+++ ++.+.+++.|+..+.-|+
T Consensus 73 ~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-DLp~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 73 LADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-DLPPEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 344556677777 334567643 33332234678999999999999997 44443 456667788987765432
Q ss_pred -C-HHHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 119 -S-FDEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 119 -s-~~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+ .+.++...+...++|-+.+. ...|.... +.....++..+++.. ++||++.+||++++++.+++.. ||||++
T Consensus 152 ~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~---~~pv~vGfGI~~~e~v~~~~~~-ADGviV 227 (258)
T PRK13111 152 TTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT---DLPVAVGFGISTPEQAAAIAAV-ADGVIV 227 (258)
T ss_pred CCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC---CCcEEEEcccCCHHHHHHHHHh-CCEEEE
Confidence 3 45666666666676655333 11232211 223456778887765 7999999999999999999986 999999
Q ss_pred ccccccCccC
Q 020013 195 GTRFVASEES 204 (332)
Q Consensus 195 GT~fl~t~Es 204 (332)
||+|+...|.
T Consensus 228 GSaiv~~~~~ 237 (258)
T PRK13111 228 GSALVKIIEE 237 (258)
T ss_pred cHHHHHHHHh
Confidence 9999877653
No 117
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.12 E-value=3.2e-09 Score=94.31 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=100.3
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC--cHHHHHHHHhCCCEEEEecC--CHHHHHHHH
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY--SEELVLEAHSAGVKVVPQVG--SFDEARKAV 127 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~--~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~ 127 (332)
.+.++++++.++.++.+.++++.+ .++++.+.+.+++.|++|.+.+ +.+.++.+++.|+.++..++ +..+..+.+
T Consensus 50 ~~~~~~i~~~~~~~~~v~l~v~d~-~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~ 128 (220)
T PRK05581 50 PPVVEAIRKVTKLPLDVHLMVENP-DRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDV 128 (220)
T ss_pred HHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHH
Confidence 345666666544678899998765 5577888899999999996532 23456677788998887773 444444555
Q ss_pred HcCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhCCCC--CcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 128 NAGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIGDRD--IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 128 ~~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~--iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...+|+|.+.+...|+... .....+..+.++++.....+ .+|+++||| +.+++.+++..|+|+|++||+++..++
T Consensus 129 ~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI-~~~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 129 LDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI-NADNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred HhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 5679988875543333210 11122444555554432111 346789999 779999999999999999999996543
No 118
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=99.12 E-value=2.6e-09 Score=96.34 Aligned_cols=170 Identities=21% Similarity=0.252 Sum_probs=113.2
Q ss_pred HHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH--
Q 020013 25 PELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE-- 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~-- 100 (332)
.+++....++|. +.++.-+.|. ..--+.+..+++.++.|+--+=|+. ++.++..+...|+|+|.+.....+.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F--~Gs~~dL~~v~~~~~~PvL~KDFIi--d~~QI~eA~~~GADaVLLI~~~L~~~~ 146 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFF--GGSLEDLRAVRKAVDLPVLRKDFII--DPYQIYEARAAGADAVLLIAAILSDDQ 146 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCC--HHHHHHHHHHHHHSSS-EEEES-----SHHHHHHHHHTT-SEEEEEGGGSGHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCC--CCCHHHHHHHHHHhCCCcccccCCC--CHHHHHHHHHcCCCEeehhHHhCCHHH
Confidence 456666666663 4444433222 1123446667777778876654443 3567888899999999886544333
Q ss_pred --HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 101 --ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 101 --~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
++++..+..|+.++..|++.+|+..+.+.|++.|.+.++.-.... ..+....++...++. ++.+|+.+||.++
T Consensus 147 l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~----vd~~~~~~l~~~ip~-~~~~iseSGI~~~ 221 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFE----VDLNRTEELAPLIPK-DVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCC----BHTHHHHHHHCHSHT-TSEEEEESS-SSH
T ss_pred HHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcc----cChHHHHHHHhhCcc-ceeEEeecCCCCH
Confidence 456667788999999999999999999999999999877543221 222333344443332 5889999999999
Q ss_pred HHHHHHHHcCcceeeeccccccCcc
Q 020013 179 RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++..+..+|+|||.+|++||.++.
T Consensus 222 ~d~~~l~~~G~davLVGe~lm~~~d 246 (254)
T PF00218_consen 222 EDARRLARAGADAVLVGEALMRSPD 246 (254)
T ss_dssp HHHHHHCTTT-SEEEESHHHHTSSS
T ss_pred HHHHHHHHCCCCEEEECHHHhCCCC
Confidence 9999999999999999999998864
No 119
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.11 E-value=8.9e-09 Score=98.30 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhc-CCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCCc--------------HHH----HHH
Q 020013 48 PDYLRDLIRKTRSLT-ERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYS--------------EEL----VLE 105 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~~--------------~~~----i~~ 105 (332)
.+...+++.++++.. +.|+-++++..... .+.++.+.+.++|++.+++++|. ++. ++.
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~ 176 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGW 176 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHH
Confidence 344444455555433 67999998662221 23455566678999998765421 122 344
Q ss_pred HHh-CCCEEEEecC----CH-HHHHHHHHcCCCEEEEecCCC-------------------CcccC--CC-Cc--hhhhH
Q 020013 106 AHS-AGVKVVPQVG----SF-DEARKAVNAGVDAIIVQGREA-------------------GGHVI--GQ-DG--LISLL 155 (332)
Q Consensus 106 ~~~-~g~~v~~~v~----s~-~~a~~a~~~g~D~ivv~G~ea-------------------GGh~~--~~-~~--~~~ll 155 (332)
+++ ..++++.+.+ ++ +-++.+.+.|+|+|++.++-. +++.+ |+ .. .+..+
T Consensus 177 Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v 256 (385)
T PLN02495 177 INAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKV 256 (385)
T ss_pred HHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHH
Confidence 454 3688887765 33 345567889999999855321 11110 11 11 12334
Q ss_pred HHHHHHhCC---CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 156 PMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 156 ~~i~~~~~~---~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.++++.+.. .++||++.|||.+++|+.+++.+||+.||++|+++..
T Consensus 257 ~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~ 305 (385)
T PLN02495 257 MAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH 305 (385)
T ss_pred HHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec
Confidence 445555421 1589999999999999999999999999999999964
No 120
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=99.10 E-value=1.2e-08 Score=91.86 Aligned_cols=154 Identities=25% Similarity=0.414 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc---------cCC---CcHHHHHHHHh--CCCEEEEe
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS---------WGE---YSEELVLEAHS--AGVKVVPQ 116 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~---------~g~---~~~~~i~~~~~--~g~~v~~~ 116 (332)
+.....++++..+.|+|||++.+.+ .+.+.++...++++|-.. .|. ...++.+.-+. +.++++..
T Consensus 68 M~~i~~~v~~~~~~p~GVnvL~nd~-~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaD 146 (254)
T PF03437_consen 68 MARIAREVRREVSVPVGVNVLRNDP-KAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILAD 146 (254)
T ss_pred HHHHHHHHHHhCCCCEEeeeecCCC-HHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEee
Confidence 4455666777678899999998766 567888999999998632 121 01233333222 34788866
Q ss_pred cC----------CHHHH-HHH-HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 117 VG----------SFDEA-RKA-VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 117 v~----------s~~~a-~~a-~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
|. +.+++ +.+ ...++|+|++.|... |....+..+.++++.+ ++||++.+|+ |++|+.++
T Consensus 147 V~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T-----G~~~~~~~l~~vr~~~---~~PVlvGSGv-t~~Ni~~~ 217 (254)
T PF03437_consen 147 VHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT-----GEPPDPEKLKRVREAV---PVPVLVGSGV-TPENIAEY 217 (254)
T ss_pred echhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc-----CCCCCHHHHHHHHhcC---CCCEEEecCC-CHHHHHHH
Confidence 53 34443 344 567999999976643 3345678888888887 5999999999 99999999
Q ss_pred HHcCcceeeeccccccCc--cCCCCHHHHHHHh
Q 020013 185 LSLGAQGICLGTRFVASE--ESYAHPEYKRKLV 215 (332)
Q Consensus 185 l~~GA~gV~~GT~fl~t~--Es~~~~~~k~~~~ 215 (332)
|.. |||+.+||.|-..- +.+.++.--++++
T Consensus 218 l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm 249 (254)
T PF03437_consen 218 LSY-ADGAIVGSYFKKDGKWENPVDPERVRRFM 249 (254)
T ss_pred HHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHH
Confidence 987 99999999987433 3344444433333
No 121
>PRK08999 hypothetical protein; Provisional
Probab=99.09 E-value=2.8e-09 Score=99.86 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=109.3
Q ss_pred HHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHH
Q 020013 28 VAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEA 106 (332)
Q Consensus 28 a~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~ 106 (332)
+.+..+ +|+..+.... ..+.+.+.+.++++++.+. .+++.++++ +.++.+.+.++|.|++...+.+....+.
T Consensus 150 ~~~~l~-~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~-~~~~~liin----d~~~la~~~~~~GvHl~~~d~~~~~~r~- 222 (312)
T PRK08999 150 LERALA-AGIRLIQLRAPQLPPAAYRALARAALGLCR-RAGAQLLLN----GDPELAEDLGADGVHLTSAQLAALAARP- 222 (312)
T ss_pred HHHHHH-CCCcEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCCEEEEE----CcHHHHHhcCCCEEEcChhhcChHhhcc-
Confidence 334444 4566665421 1345566777777776543 245666664 4578889999999999854444322322
Q ss_pred HhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 107 HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 107 ~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
...+..+...+++.+++..+.+.|+|||.+... ....|...+...+..+.++++.. ++||+|-||| +.+++.+++
T Consensus 223 ~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~AiGGI-~~~~~~~~~ 298 (312)
T PRK08999 223 LPAGRWVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV---PLPVYALGGL-GPGDLEEAR 298 (312)
T ss_pred CCCCCEEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHH
Confidence 223567778999999999999999999998332 11223211222356677777665 7999999999 999999999
Q ss_pred HcCcceeeeccccc
Q 020013 186 SLGAQGICLGTRFV 199 (332)
Q Consensus 186 ~~GA~gV~~GT~fl 199 (332)
.+||+||.+-+.|+
T Consensus 299 ~~g~~gva~i~~~~ 312 (312)
T PRK08999 299 EHGAQGIAGIRGLW 312 (312)
T ss_pred HhCCCEEEEEEEeC
Confidence 99999999988763
No 122
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.08 E-value=4.2e-09 Score=102.69 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=94.8
Q ss_pred CCcEEEEeecC-CCC--HHHHHHHHhcCCcEEEEccCCCc---------------H---HHHHHHHh-CCCEEEEecC--
Q 020013 63 ERPFGVGVVLA-FPH--NENIKAILSEKVAVLQVSWGEYS---------------E---ELVLEAHS-AGVKVVPQVG-- 118 (332)
Q Consensus 63 ~~p~gvnl~~~-~~~--~~~~~~~~~~~~~~I~~~~g~~~---------------~---~~i~~~~~-~g~~v~~~v~-- 118 (332)
+.|+.++++.. .+. .+..+.+.+.++|+|.+++++|. . ++++.+++ ..++|+.+++
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~ 178 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPN 178 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 57888888776 321 33445556678999999877643 1 23444444 3678887765
Q ss_pred --CH-HHHHHHHHcCCCEEEEecC----------------------CCCcccCCCC---chhhhHHHHHHHhCCCCCcEE
Q 020013 119 --SF-DEARKAVNAGVDAIIVQGR----------------------EAGGHVIGQD---GLISLLPMVVDLIGDRDIPII 170 (332)
Q Consensus 119 --s~-~~a~~a~~~g~D~ivv~G~----------------------eaGGh~~~~~---~~~~ll~~i~~~~~~~~iPvi 170 (332)
+. +.++.+++.|+|+|++.++ ..||.. |+. -.+..+.++++.+...++|||
T Consensus 179 ~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~S-G~a~~p~~l~~v~~~~~~~~~~~ipIi 257 (420)
T PRK08318 179 ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYC-GPAVKPIALNMVAEIARDPETRGLPIS 257 (420)
T ss_pred cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCccccc-chhhhHHHHHHHHHHHhccccCCCCEE
Confidence 22 4456688899999996332 122332 221 136777777776521269999
Q ss_pred eecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 171 AAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 171 aaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.|||.+++|+.+++.+|||+||+||+++.
T Consensus 258 g~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 258 GIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred eecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 999999999999999999999999999997
No 123
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.05 E-value=8.3e-09 Score=92.41 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=100.6
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC--CCcHHHHHHHHhCC-CEEEEe-------------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG--EYSEELVLEAHSAG-VKVVPQ------------- 116 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g--~~~~~~i~~~~~~g-~~v~~~------------- 116 (332)
+.++++++.++.|+-++-.+.. .+.++.+.+.|++.|.+... ..+..+.+..+..| -++++.
T Consensus 62 ~~i~~i~~~~~~pi~~ggGI~~--~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 62 PVIKKIVRETGVPVQVGGGIRS--LEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred HHHHHHHHhcCCCEEEeCCcCC--HHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 4566666667788887654432 56788889999998877521 12333444455554 223321
Q ss_pred -----cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 117 -----VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 117 -----v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
....+.++.+.+.|+|.+++.....-|...+ ..+.++.++.+.. ++||+++|||.+.+++.+++..||+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g--~~~~~i~~i~~~~---~ipvia~GGi~~~~di~~~~~~Gadg 214 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG--PNFELTKELVKAV---NVPVIASGGVSSIDDLIALKKLGVYG 214 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC--CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 1124456678889999999866544443322 3488888888876 79999999999999999999999999
Q ss_pred eeeccccccCc
Q 020013 192 ICLGTRFVASE 202 (332)
Q Consensus 192 V~~GT~fl~t~ 202 (332)
|++||+|+...
T Consensus 215 v~ig~a~~~~~ 225 (230)
T TIGR00007 215 VIVGKALYEGK 225 (230)
T ss_pred EEEeHHHHcCC
Confidence 99999998653
No 124
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.05 E-value=5.1e-09 Score=94.70 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEcc---C--CCcHHHHHHHHhCCCEEEEecC---CH
Q 020013 53 DLIRKTRSLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSW---G--EYSEELVLEAHSAGVKVVPQVG---SF 120 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~---g--~~~~~~i~~~~~~g~~v~~~v~---s~ 120 (332)
+.++++|+.++.|+.+ |.+.. ...++++.+.+.|++.|.+|. . ....++++.+++.|++.+..++ +.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~-~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~ 142 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVD-SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD 142 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhh-CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 4677787767788732 22222 225668889999999999982 1 1234677888999999887665 35
Q ss_pred HHHHHHHHcCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+..+...+....+++. +...| |.. -.......+.++++... +.||++.|||++++++.+++..|||++++||+++
T Consensus 143 e~l~~~~~~~~~~l~m-sv~~~~g~~-~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 143 LLIHRLSKLSPLFIYY-GLRPATGVP-LPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred HHHHHHHHhCCCEEEE-EeCCCCCCC-chHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 6666666665555544 43222 111 12233456666666553 4799999999999999999999999999999998
Q ss_pred cC
Q 020013 200 AS 201 (332)
Q Consensus 200 ~t 201 (332)
..
T Consensus 219 ~~ 220 (244)
T PRK13125 219 EE 220 (244)
T ss_pred HH
Confidence 63
No 125
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=99.05 E-value=1.1e-08 Score=91.69 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=115.6
Q ss_pred HHHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH
Q 020013 25 PELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~ 100 (332)
.+++....++|. +.++.-+.|. +.+. ++.+++.++.|+-..=|+. ++.++..+...|+|+|.+.+...+.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~----l~~v~~~v~~PvL~KDFIi--d~~QI~ea~~~GADavLLI~~~L~~ 137 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLED----LKSVSSELKIPVLRKDFIL--DEIQIREARAFGASAILLIVRILTP 137 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHH----HHHHHHhcCCCEEeccccC--CHHHHHHHHHcCCCEEEeEHhhCCH
Confidence 356665655553 4444332221 3443 5566666677766543433 2567778888999999887554433
Q ss_pred ----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
++++..+..|+.++..|++.+|+..+.+.|++.|-+.++.-.... .......++...++. ++.+|+.+||.
T Consensus 138 ~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~----vd~~~~~~L~~~ip~-~~~~IsESGI~ 212 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQ----IHQNLVEEVAAFLPP-NIVKVGESGIE 212 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccce----ECHHHHHHHHhhCCC-CcEEEEcCCCC
Confidence 455667778999999999999999999999999999877543221 112223344444432 67899999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++..+... +|||.+|+++|.++.
T Consensus 213 t~~d~~~l~~~-~davLvG~~lm~~~d 238 (247)
T PRK13957 213 SRSDLDKFRKL-VDAALIGTYFMEKKD 238 (247)
T ss_pred CHHHHHHHHHh-CCEEEECHHHhCCCC
Confidence 99999998776 999999999998754
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.03 E-value=6e-09 Score=94.08 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecC-CC-----CHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEec---
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLA-FP-----HNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQV--- 117 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~-~~-----~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v--- 117 (332)
..-+.++++|+.++.|+ .++.. .+ .+.+++.+.+.|++.+.++ ..+ ..++++.+++.|++.+..+
T Consensus 63 ~~~~~~~~vr~~~~~pv--~lm~y~n~~~~~G~~~fi~~~~~aG~~giiip-Dl~~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 63 DVLELVKEIRKKNTIPI--VLMGYYNPILQYGLERFLRDAKEAGVDGLIIP-DLPPEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHHHHHHHhhcCCCCE--EEEEecCHHHHhCHHHHHHHHHHCCCcEEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 44556777776556774 34433 21 2677899999999999995 222 2356777888998766543
Q ss_pred CCHHHHHHHHHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 118 GSFDEARKAVNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 118 ~s~~~a~~a~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++.+..+...+...|.|.+.+. ..|+...........+.++++.. ++||++.|||.+++++.++..+ |||+++|
T Consensus 140 T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~---~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 140 TPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT---DLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC---CCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 2455666666656777666443 22333211234567777777754 7999999999999999999999 9999999
Q ss_pred cccccCccCC
Q 020013 196 TRFVASEESY 205 (332)
Q Consensus 196 T~fl~t~Es~ 205 (332)
|+|+..-|..
T Consensus 216 Saiv~~~~~~ 225 (242)
T cd04724 216 SALVKIIEEG 225 (242)
T ss_pred HHHHHHHHhc
Confidence 9998776543
No 127
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.03 E-value=3.6e-09 Score=100.04 Aligned_cols=98 Identities=29% Similarity=0.388 Sum_probs=79.1
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEecCCCCccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 114 VPQVGSFDEARKAVNAGVDAIIVQGREAGGHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 114 ~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
...+.+++++..+...|+|+|++.+. ||.. ++..+++..|+++++.++. ++||+++|||.++.|+.+++++||++|
T Consensus 223 ~kGV~~~~D~~~a~~tg~~~I~vsnh--ggrqlD~g~st~~~L~ei~~av~~-~~~vi~dGGiR~G~Dv~KAlALGA~~v 299 (360)
T COG1304 223 LKGILAPEDAAGAGGTGADGIEVSNH--GGRQLDWGISTADSLPEIVEAVGD-RIEVIADGGIRSGLDVAKALALGADAV 299 (360)
T ss_pred HhCCCCHHHHHhhccCCceEEEEEcC--CCccccCCCChHHHHHHHHHHhCC-CeEEEecCCCCCHHHHHHHHHhCCchh
Confidence 34577889999999999999999876 4432 2335789999999999853 499999999999999999999999999
Q ss_pred eeccccccCccCCCCHHHHHHH
Q 020013 193 CLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 193 ~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
.+|..|+..-.....+...+.|
T Consensus 300 ~igrp~L~~l~~~g~~GV~~~l 321 (360)
T COG1304 300 GIGRPFLYGLAAGGEAGVERVL 321 (360)
T ss_pred hhhHHHHHHHHhccHHHHHHHH
Confidence 9999998776665544344333
No 128
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.02 E-value=1.1e-08 Score=102.01 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=115.1
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+....++| +..+.... ..+.+.+.+.++++++.... +++.++++ +.++.+.+.+++.|++...+.+....+
T Consensus 311 ~~l~~~l~~G-v~~vqlR~k~~~~~~~~~~a~~l~~~~~~-~~~~liin----d~~~lA~~~~adGvHl~~~d~~~~~~r 384 (502)
T PLN02898 311 DAVRAAIEGG-ATIVQLREKEAETREFIEEAKACLAICRS-YGVPLLIN----DRVDVALACDADGVHLGQSDMPVRLAR 384 (502)
T ss_pred HHHHHHHHcC-CCEEEEccCCCCHHHHHHHHHHHHHHHHH-hCCEEEEc----ChHHHHHhcCCCEEEeChHhcCHHHHH
Confidence 3445554544 67665421 13455666777777665432 56777774 457888899999999975544444444
Q ss_pred HHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA 183 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~ 183 (332)
.....+..+...+++.+++..+.+.|+|||.+-.. ....|...+...+..++++.+.. ++||++.||| +++++.+
T Consensus 385 ~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~aiGGI-~~~~~~~ 460 (502)
T PLN02898 385 SLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS---KLPVVAIGGI-SASNAAS 460 (502)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC---CCCEEEECCC-CHHHHHH
Confidence 43334567778899999999999999999986211 12222211122366777776654 7999999999 8999999
Q ss_pred HHHcCcc---eeeeccccccCc
Q 020013 184 ALSLGAQ---GICLGTRFVASE 202 (332)
Q Consensus 184 al~~GA~---gV~~GT~fl~t~ 202 (332)
++.+|++ ||.+++.++.++
T Consensus 461 ~~~~G~~~~~gvav~~~i~~~~ 482 (502)
T PLN02898 461 VMESGAPNLKGVAVVSALFDQE 482 (502)
T ss_pred HHHcCCCcCceEEEEeHHhcCC
Confidence 9999999 999999998653
No 129
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=99.01 E-value=4.8e-09 Score=93.74 Aligned_cols=168 Identities=19% Similarity=0.258 Sum_probs=118.3
Q ss_pred HHHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC--
Q 020013 25 PELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-- 98 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~-- 98 (332)
.+++.+..++|. +.++.-+.|. +++. ++.+++.+..|+-..=|+. ++.++..+...|+|+|.+-....
T Consensus 69 ~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~----L~~v~~~v~~PvL~KDFii--D~yQI~~Ar~~GADavLLI~~~L~~ 142 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLTDPKYFQGSFED----LRAVRAAVDLPVLRKDFII--DPYQIYEARAAGADAVLLIVAALDD 142 (254)
T ss_pred HHHHHHHHHhCCeEEEEecCccccCCCHHH----HHHHHHhcCCCeeeccCCC--CHHHHHHHHHcCcccHHHHHHhcCH
Confidence 345666666553 4444433222 3444 4666666778866544443 35678888999999987643222
Q ss_pred --cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 99 --SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 99 --~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
..++.+..++.|+.++..|++.+|+.++.+.|++.|-+.++.--... ..+....++....+. +.-+|.-+||.
T Consensus 143 ~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~----vdl~~t~~la~~~p~-~~~~IsESGI~ 217 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLE----VDLETTEKLAPLIPK-DVILISESGIS 217 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchhe----ecHHHHHHHHhhCCC-CcEEEecCCCC
Confidence 23566777889999999999999999999999999998777443321 112222333333332 57899999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCcc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+++++..+...||+|+.+||++|.++.
T Consensus 218 ~~~dv~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 218 TPEDVRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred CHHHHHHHHHcCCCEEEecHHHhcCCC
Confidence 999999999999999999999998865
No 130
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.01 E-value=3e-08 Score=92.76 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=114.3
Q ss_pred CCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC----------------------------CCHHHHHHHHHHHH
Q 020013 8 GFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW----------------------------EAPDYLRDLIRKTR 59 (332)
Q Consensus 8 ~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~----------------------------~~~e~~~~~i~~~r 59 (332)
.++.||+.|.=. ...+.+....+..+| +|++..++. ...+.+.+.+++++
T Consensus 10 ~l~NPv~~AsG~-~~~~~e~~~~~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~~ 87 (310)
T PRK02506 10 KFDNCLMNAAGV-YCMTKEELEEVEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLELQ 87 (310)
T ss_pred ECCCCCEeCCCC-CCCCHHHHHHHHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHHH
Confidence 367899977743 224677777776665 666633210 11344444555554
Q ss_pred hh-cCCcEEEEeecCCCC--HHHHHHHHhcC-CcEEEEccCCC-----------cH---HHHHHHHh-CCCEEEEecC--
Q 020013 60 SL-TERPFGVGVVLAFPH--NENIKAILSEK-VAVLQVSWGEY-----------SE---ELVLEAHS-AGVKVVPQVG-- 118 (332)
Q Consensus 60 ~~-~~~p~gvnl~~~~~~--~~~~~~~~~~~-~~~I~~~~g~~-----------~~---~~i~~~~~-~g~~v~~~v~-- 118 (332)
+. .+.|+.+++...... .+..+.+.+.+ +|+|.++..+| +. ++++.+++ ..++++.+++
T Consensus 88 ~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~ 167 (310)
T PRK02506 88 KKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPY 167 (310)
T ss_pred hhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCC
Confidence 43 257888888765431 22334444556 89999876654 22 23444544 3567776655
Q ss_pred -CH-HHHHHHH---HcCCCEEEEecC--------------------CCCcccCCC-C--chhhhHHHHHHHhCCCCCcEE
Q 020013 119 -SF-DEARKAV---NAGVDAIIVQGR--------------------EAGGHVIGQ-D--GLISLLPMVVDLIGDRDIPII 170 (332)
Q Consensus 119 -s~-~~a~~a~---~~g~D~ivv~G~--------------------eaGGh~~~~-~--~~~~ll~~i~~~~~~~~iPvi 170 (332)
+. +.++.+. +.|+|+|...+. ..||-. |+ . ..+..+.++++.+.. ++|||
T Consensus 168 ~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlS-G~~i~p~al~~v~~~~~~~~~-~ipIi 245 (310)
T PRK02506 168 FDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIG-GDYIKPTALANVRAFYQRLNP-SIQII 245 (310)
T ss_pred CCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCC-chhccHHHHHHHHHHHHhcCC-CCCEE
Confidence 22 2233333 446676554321 112222 22 1 235556666666532 69999
Q ss_pred eecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 171 AAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 171 aaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.|||.+++|+.+++.+||+.||++|+++.
T Consensus 246 g~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 246 GTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred EECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 999999999999999999999999999986
No 131
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.00 E-value=2.7e-08 Score=89.55 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcH---HHHHHHHhCCCEEEEec
Q 020013 46 EAPDYLRDLIRKTRSL-TERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSE---ELVLEAHSAGVKVVPQV 117 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~-~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~---~~i~~~~~~g~~v~~~v 117 (332)
.+.+..-++++++|+. .+.|+.+ |.+.....+.+++.+.+.|+|.+.+. ..|++ ++.+.+++.|+..+.-|
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp-DLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP-DLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC-CCChHHHHHHHHHHHHcCCcEEEEe
Confidence 3556667788888854 5678765 44444444677889999999999887 43332 35566677888766544
Q ss_pred --CCH-HHHHHHHHcCCCEEEEecC-CCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 118 --GSF-DEARKAVNAGVDAIIVQGR-EAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 118 --~s~-~~a~~a~~~g~D~ivv~G~-eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
++. +..++..+..-.+|.+... ...|-... ......++..+++.. ++||+..-||+++++++++.+. ||||
T Consensus 155 aPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGV 230 (265)
T COG0159 155 APTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGV 230 (265)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc---CCCeEEecCcCCHHHHHHHHHh-CCeE
Confidence 344 4444444443334444333 22232211 112456677777665 8999999999999999999999 9999
Q ss_pred eeccccccCccCCCC
Q 020013 193 CLGTRFVASEESYAH 207 (332)
Q Consensus 193 ~~GT~fl~t~Es~~~ 207 (332)
++||+|+..-|....
T Consensus 231 IVGSAiV~~i~~~~~ 245 (265)
T COG0159 231 IVGSAIVKIIEEGLD 245 (265)
T ss_pred EEcHHHHHHHHhccc
Confidence 999999988776543
No 132
>PRK14057 epimerase; Provisional
Probab=99.00 E-value=1.7e-08 Score=90.60 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=101.4
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCE---------EEE--ec-CCH
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVK---------VVP--QV-GSF 120 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~---------v~~--~v-~s~ 120 (332)
++.+++ +.|+-|++++..| +.+++.+.++|+|.|.+|+.. .+.+.++.+|+.|++ ... .. +++
T Consensus 69 i~~i~~--~~p~DvHLMV~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~ 145 (254)
T PRK14057 69 VGQLPQ--TFIKDVHLMVADQ-WTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL 145 (254)
T ss_pred HHHhcc--CCCeeEEeeeCCH-HHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH
Confidence 334444 5799999999887 678999999999999999652 245788899998873 332 22 345
Q ss_pred HHHHHHHHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 121 DEARKAVNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
+.....+. -+|.|.+- .+..||+. -....+..+.++++..++ .++.|.+.||| +.+++..+.++|||.+++||
T Consensus 146 e~i~~~l~-~vD~VLvMtV~PGfgGQ~-Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GS 222 (254)
T PRK14057 146 DVIIPILS-DVEVIQLLAVNPGYGSKM-RSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGS 222 (254)
T ss_pred HHHHHHHH-hCCEEEEEEECCCCCchh-ccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEECh
Confidence 55554554 59999873 45555654 223456666666655432 24679999999 89999999999999999999
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
++..
T Consensus 223 alF~ 226 (254)
T PRK14057 223 ALFR 226 (254)
T ss_pred HhhC
Confidence 9775
No 133
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=98.99 E-value=2.2e-08 Score=87.47 Aligned_cols=161 Identities=22% Similarity=0.337 Sum_probs=109.3
Q ss_pred HHHHHHhCCCceeecCCCC--------CCHH---HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-
Q 020013 27 LVAAVANAGGLGLLRAPDW--------EAPD---YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS- 94 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~--------~~~e---~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~- 94 (332)
.+.+..++|.=++|.. +| ..|+ .+...+++++.....|+|||++-|.+ ...+.++...++++|-.+
T Consensus 39 dA~~leegG~DavivE-N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~-vaA~~IA~a~gA~FIRVN~ 116 (263)
T COG0434 39 DAAALEEGGVDAVIVE-NYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDA-VAALAIAYAVGADFIRVNV 116 (263)
T ss_pred HHHHHHhCCCcEEEEe-ccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeecccc-HHHHHHHHhcCCCEEEEEe
Confidence 3445555555566643 22 1233 34455666666678999999998776 566778888899998643
Q ss_pred --------cCCC---cHHHHHHHH--hCCCEEEEecC----------CHHHHH-H-HHHcCCCEEEEecCCCCcccCCCC
Q 020013 95 --------WGEY---SEELVLEAH--SAGVKVVPQVG----------SFDEAR-K-AVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 95 --------~g~~---~~~~i~~~~--~~g~~v~~~v~----------s~~~a~-~-a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
.|.. ..++.+..+ ..+++++..++ +.+++. . .+..++|+||+.|...|+ .
T Consensus 117 ~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~-----~ 191 (263)
T COG0434 117 LTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGS-----P 191 (263)
T ss_pred eeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCC-----C
Confidence 2221 123333222 25788887653 555543 3 456689999998775443 3
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+....|..+++.. +.||++..|+ +++|+...+.. |||+++||.|=
T Consensus 192 ~d~~el~~a~~~~---~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 192 PDLEELKLAKEAV---DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred CCHHHHHHHHhcc---CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 4567777777776 7999999999 89999999999 99999999864
No 134
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.98 E-value=1.8e-08 Score=89.92 Aligned_cols=123 Identities=22% Similarity=0.233 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCcEEEEccC---CC---cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCC---
Q 020013 77 NENIKAILSEKVAVLQVSWG---EY---SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG--- 147 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g---~~---~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~--- 147 (332)
+..++.+.+.|++.|.+... .+ ..+.++.+++.|+.++..+++.++++.+.+.++|+|-+....+-|+..+
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~ 154 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSK 154 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCc
Confidence 44578888899999988632 11 1245667778899999899999999988889999988876544343211
Q ss_pred C--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 148 Q--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 148 ~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
. ......+..+++.. .++||++.|||.+++++..++..|+|||.+||+++.+
T Consensus 155 ~~~~~i~~~~~~ir~~~--~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVN--PDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CCHHHHHHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 1 11122233333322 2689999999999999999999999999999999965
No 135
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.97 E-value=7.3e-10 Score=104.67 Aligned_cols=197 Identities=21% Similarity=0.254 Sum_probs=99.5
Q ss_pred cCCccceecCCCCCCCCcHH----HHHHHHhCCCceeecCCCCCCHHHHHHHHHH-HHhhcCCcEEEEe-----------
Q 020013 7 LGFEYGIVQAPLGPDISGPE----LVAAVANAGGLGLLRAPDWEAPDYLRDLIRK-TRSLTERPFGVGV----------- 70 (332)
Q Consensus 7 l~~~~Pii~apM~~g~s~~~----la~avs~aGglG~i~~~~~~~~e~~~~~i~~-~r~~~~~p~gvnl----------- 70 (332)
+.++.|++.++|+.|.-+.+ |+.++..+|..-.-+.+ -.+|+.+...-+. +.+.....||++-
T Consensus 62 ~~l~~p~~is~MS~GaLS~~a~~Ala~ga~~~G~~~ntGEG-g~~~~~~~~~~~~~I~Q~~sg~fGv~~~~l~~a~~iEI 140 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALSEEAKEALAKGANMAGTASNTGEG-GELPEERKAAKDLRIKQIASGRFGVRPEYLKQADMIEI 140 (368)
T ss_dssp HHHHTTEEEEEB-CTTC-HHHHHHHHHHHHHCT-EEEETTT----GGGCSB-TTSSEEEE-TT-TT--HHHHCC-SEEEE
T ss_pred hhheeeeecccCChhhcCHHHHHHHHHHHHHhCceEecCCC-CCCHHHhcccCCceEEEcCCCCCCCCHHHhcCCCeEEE
Confidence 55789999999998854544 45555555644333443 3455443222111 2222233344331
Q ss_pred ecCC---C----------CHHHHHHHH--hcCCcEEEEc--cCCC-cH---HHHHHHHhC--CCEEEEecC---CHHHHH
Q 020013 71 VLAF---P----------HNENIKAIL--SEKVAVLQVS--WGEY-SE---ELVLEAHSA--GVKVVPQVG---SFDEAR 124 (332)
Q Consensus 71 ~~~~---~----------~~~~~~~~~--~~~~~~I~~~--~g~~-~~---~~i~~~~~~--g~~v~~~v~---s~~~a~ 124 (332)
-+.+ | ..+.+..+. ..+.+.++-+ .+.. ++ ++++.+|+. +.+|..++. ..+...
T Consensus 141 KigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~ 220 (368)
T PF01645_consen 141 KIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIA 220 (368)
T ss_dssp E---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHH
T ss_pred EEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHH
Confidence 1111 0 122233332 2356666542 1111 22 456666663 577765542 334333
Q ss_pred H-HHHcCCCEEEEecCCCCcccCCC--------CchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 125 K-AVNAGVDAIIVQGREAGGHVIGQ--------DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 125 ~-a~~~g~D~ivv~G~eaGGh~~~~--------~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
. +.++|+|+|+++|.++|... .+ .++...+.++.+.+.. .++.++++|||.++.|+.+++++|||+
T Consensus 221 ~~~~~ag~D~ItIDG~~GGTGA-ap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~ 299 (368)
T PF01645_consen 221 AGAAKAGADFITIDGAEGGTGA-APLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADA 299 (368)
T ss_dssp HHHHHTT-SEEEEE-TT---SS-EECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SE
T ss_pred HhhhhccCCEEEEeCCCCCCCC-CchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCe
Confidence 3 77899999999999866432 11 2344456666655421 368999999999999999999999999
Q ss_pred eeeccccccCccCC
Q 020013 192 ICLGTRFVASEESY 205 (332)
Q Consensus 192 V~~GT~fl~t~Es~ 205 (332)
|.+||.+|.+-.|.
T Consensus 300 v~igt~~liAlGC~ 313 (368)
T PF01645_consen 300 VYIGTAALIALGCI 313 (368)
T ss_dssp EE-SHHHHHHCT--
T ss_pred eEecchhhhhcchH
Confidence 99999999998875
No 136
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=98.96 E-value=4.2e-09 Score=92.14 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=102.4
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEecC--CH-HHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQVG--SF-DEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v~--s~-~~a~~a~ 127 (332)
+.++.+|+.++.|+-|++++..| ..+++.+.+.|++.|.+|... .+.++++.+|+.|+++...+. ++ +.....
T Consensus 47 ~~i~~i~~~~~~~~DvHLMv~~P-~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~- 124 (201)
T PF00834_consen 47 DIIKAIRKITDLPLDVHLMVENP-ERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPY- 124 (201)
T ss_dssp HHHHHHHTTSSSEEEEEEESSSG-GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTT-
T ss_pred HHHHHHhhcCCCcEEEEeeeccH-HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHH-
Confidence 34677788889999999999887 678999999999999999643 346788999999999775543 33 333333
Q ss_pred HcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 128 NAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 128 ~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
-.-+|.|.+-..+- ||+. -....+.-+.++++... +.++.+.+.||| +.+++..+.++|||.+++||.++.+
T Consensus 125 l~~vD~VlvMsV~PG~~Gq~-f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 125 LDQVDMVLVMSVEPGFGGQK-FIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp GCCSSEEEEESS-TTTSSB---HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred hhhcCEEEEEEecCCCCccc-ccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 33699999865544 4443 11244555555555442 135889999999 7899999999999999999987643
No 137
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=98.96 E-value=3.5e-08 Score=87.60 Aligned_cols=140 Identities=10% Similarity=0.034 Sum_probs=102.9
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCC--EEEEec---CCHHHHHHHH
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGV--KVVPQV---GSFDEARKAV 127 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~--~v~~~v---~s~~~a~~a~ 127 (332)
++.+++ +.|+-|++++..| +++++.+.++|++.|.+|+.. .+.+.++.+|+.|+ +....+ ++++.....+
T Consensus 62 i~~i~~--~~~~DvHLMv~~P-~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l 138 (228)
T PRK08091 62 IKQFPT--HCFKDVHLMVRDQ-FEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYL 138 (228)
T ss_pred HHHhCC--CCCEEEEeccCCH-HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHH
Confidence 444443 6799999999887 678999999999999999752 24578889999998 765443 3455555444
Q ss_pred HcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 128 NAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 128 ~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
. -+|.|.+- .+..||.. .....+..+.++++..++ .++.|-+.||| +.+++..+.++|||.+++||++..
T Consensus 139 ~-~vD~VLiMtV~PGfgGQ~-f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~ 212 (228)
T PRK08091 139 D-QIDLIQILTLDPRTGTKA-PSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELASYLKQHQIDWVVSGSALFS 212 (228)
T ss_pred h-hcCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhC
Confidence 4 58999874 44445554 223456666666665432 24669999999 899999999999999999999764
No 138
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.95 E-value=6.4e-09 Score=96.73 Aligned_cols=188 Identities=19% Similarity=0.245 Sum_probs=107.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC----------------------------CCC--HHHHHHHHHHH
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD----------------------------WEA--PDYLRDLIRKT 58 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~----------------------------~~~--~e~~~~~i~~~ 58 (332)
++.||+.+. + -..+.+......++| +|++..++ +.+ .+.+.+.+...
T Consensus 11 l~nPi~~as-G-~~~~~~~~~~~~~~G-~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~~~~~ 87 (295)
T PF01180_consen 11 LKNPIGLAS-G-LDKNGEEIKRLFDAG-FGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLERLRPI 87 (295)
T ss_dssp ESSSEEE-T-T-SSTSSHHHHHHHHHS-SSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHHHHHT
T ss_pred cCCCcEECC-c-CCCCchhhhhhhcCC-ccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHHHHHH
Confidence 678999875 2 244556666677777 77763211 001 12233333332
Q ss_pred Hhh----cCCcEEEEeecCCC--CHHHHHHH--HhcCCcEEEEccCCCc----------HH----HHHHHHh-CCCEEEE
Q 020013 59 RSL----TERPFGVGVVLAFP--HNENIKAI--LSEKVAVLQVSWGEYS----------EE----LVLEAHS-AGVKVVP 115 (332)
Q Consensus 59 r~~----~~~p~gvnl~~~~~--~~~~~~~~--~~~~~~~I~~~~g~~~----------~~----~i~~~~~-~g~~v~~ 115 (332)
+.. .+.|+.+++..... .+++.+.+ ++.++|++.+++.+|. ++ +++.+++ ..++++.
T Consensus 88 ~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~v 167 (295)
T PF01180_consen 88 LKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFV 167 (295)
T ss_dssp HHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEE
T ss_pred hhhcccccceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEE
Confidence 222 13455666555431 13444333 2378999999876531 12 2233333 3788887
Q ss_pred ecC----CHH---HHHHHHHcCCCEEEEecC---------C---------CCcccCCC-C--chhhhHHHHHHHhCCCCC
Q 020013 116 QVG----SFD---EARKAVNAGVDAIIVQGR---------E---------AGGHVIGQ-D--GLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 116 ~v~----s~~---~a~~a~~~g~D~ivv~G~---------e---------aGGh~~~~-~--~~~~ll~~i~~~~~~~~i 167 (332)
+++ +.. .+..+.+.|+|+|++.++ + .||.. |+ . ..+..+.++++.++. ++
T Consensus 168 KL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlS-G~~i~p~aL~~V~~~~~~~~~-~i 245 (295)
T PF01180_consen 168 KLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLS-GPAIRPIALRWVRELRKALGQ-DI 245 (295)
T ss_dssp EE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEE-EGGGHHHHHHHHHHHHHHTTT-SS
T ss_pred EecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcC-chhhhhHHHHHHHHHHhcccc-ce
Confidence 765 332 233445789999995332 1 12222 22 1 236667778877732 59
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|||+.|||.|++|+.+++.+||+.||++|+++..
T Consensus 246 ~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~ 279 (295)
T PF01180_consen 246 PIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR 279 (295)
T ss_dssp EEEEESS--SHHHHHHHHHHTESEEEESHHHHHH
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc
Confidence 9999999999999999999999999999999654
No 139
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.95 E-value=4.3e-08 Score=87.92 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=109.8
Q ss_pred HHHHHHHHhCCC--ceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcH
Q 020013 25 PELVAAVANAGG--LGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSE 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~ 100 (332)
.+++....+.|. +-++.... +.....-...++++++..+.|+-++=-+.. .+.++.+++.|+|.|.+.... ..+
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~--~e~~~~~~~~Gad~vvigs~~l~dp 109 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS--LEDIERLLDLGVSRVIIGTAAVKNP 109 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCC--HHHHHHHHHcCCCEEEECchHHhCh
Confidence 356666666553 33332211 111111234566666666677766543332 466778888999998875321 112
Q ss_pred HHHHHH-HhCCC-EEEEec-----------------CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH
Q 020013 101 ELVLEA-HSAGV-KVVPQV-----------------GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD 160 (332)
Q Consensus 101 ~~i~~~-~~~g~-~v~~~v-----------------~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~ 160 (332)
++++.+ +..+. +++..+ .+. +-++...+.|+|.+++.+....|...+ ..+.+++++++
T Consensus 110 ~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g--~~~~~i~~i~~ 187 (234)
T cd04732 110 ELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG--PNFELYKELAA 187 (234)
T ss_pred HHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC--CCHHHHHHHHH
Confidence 334433 33333 333221 122 445667788999999987655554322 45888999988
Q ss_pred HhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 161 LIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 161 ~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
.. ++||++.|||.+.+++.+++..||+||++||+|+..+
T Consensus 188 ~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 188 AT---GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred hc---CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 76 7999999999999999999999999999999998664
No 140
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.94 E-value=7.9e-09 Score=91.45 Aligned_cols=112 Identities=22% Similarity=0.301 Sum_probs=82.1
Q ss_pred HHHHHHHHhC---CCEEEEe-cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 EELVLEAHSA---GVKVVPQ-VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~-v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.+.++..+.. |..+++. ..++..++++.+.|||+|-.-|..-|... + .....++..+++.. ++|||+.|||
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~-G-i~~~~~I~~I~e~~---~vpVI~egGI 184 (248)
T cd04728 110 IETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQ-G-LLNPYNLRIIIERA---DVPVIVDAGI 184 (248)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCC-C-CCCHHHHHHHHHhC---CCcEEEeCCC
Confidence 4566666554 9999954 56899999999999999955333333222 2 23477788887764 7999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
++++++.+++.+|||||.+||++..+++-. ....|+.++..
T Consensus 185 ~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 185 GTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998544322 23455555543
No 141
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.93 E-value=1.6e-08 Score=91.47 Aligned_cols=153 Identities=20% Similarity=0.278 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHH-hhcCCcEEE----EeecCCCCHHHHHHHHhcCCcEEEEccCCCc---HHHHHHHHhCCCEEEEecC
Q 020013 47 APDYLRDLIRKTR-SLTERPFGV----GVVLAFPHNENIKAILSEKVAVLQVSWGEYS---EELVLEAHSAGVKVVPQVG 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r-~~~~~p~gv----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~---~~~i~~~~~~g~~v~~~v~ 118 (332)
+.+.+-++++++| +..+.|+-+ |.+.....+.+++.+.+.|++.+.+. +.|+ .++.+.+++.|+..+.-++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIip-DLP~ee~~~~~~~~~~~gl~~I~lv~ 148 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIP-DLPPEESEELREAAKKHGLDLIPLVA 148 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEET-TSBGGGHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHcCCeEEEEEC
Confidence 4455667778888 556777654 22222223567888999999999987 4433 3556667788988775543
Q ss_pred ---CHHHHHHHHHcCCCEEEEecCCC-CcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 119 ---SFDEARKAVNAGVDAIIVQGREA-GGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 119 ---s~~~a~~a~~~g~D~ivv~G~ea-GGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+.+..+...+..-.+|-+....+ .|.... ......++..+++.. ++||++.-||++++++.++. .|||||+
T Consensus 149 p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-~~aDGvI 224 (259)
T PF00290_consen 149 PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-AGADGVI 224 (259)
T ss_dssp TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-TTSSEEE
T ss_pred CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-ccCCEEE
Confidence 34555555555556666544321 222111 123456677777665 79999999999999999888 9999999
Q ss_pred eccccccCccC
Q 020013 194 LGTRFVASEES 204 (332)
Q Consensus 194 ~GT~fl~t~Es 204 (332)
+||+|+..-+.
T Consensus 225 VGSa~v~~i~~ 235 (259)
T PF00290_consen 225 VGSAFVKIIEE 235 (259)
T ss_dssp ESHHHHHHHHH
T ss_pred ECHHHHHHHHH
Confidence 99999977553
No 142
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.93 E-value=4.1e-08 Score=88.58 Aligned_cols=171 Identities=21% Similarity=0.291 Sum_probs=110.1
Q ss_pred HHHHHHHHhCCCceeecCCCCC----CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC-c
Q 020013 25 PELVAAVANAGGLGLLRAPDWE----APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY-S 99 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~----~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~-~ 99 (332)
.+++...++.| +-.+...... ........++++.+..+.|+-+|=-+. ..+.++.+++.|++.|.++.... .
T Consensus 35 ~e~a~~~~~~G-~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~--~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 35 VEVAKRWVDAG-AETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIR--SAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHcC-CCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcC--CHHHHHHHHHcCCCEEEEChHHhhC
Confidence 35666666655 3333221111 111223345555554556666642222 24667888899999998863221 2
Q ss_pred HHHHHHHHh-CCC-EEEEec------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHH
Q 020013 100 EELVLEAHS-AGV-KVVPQV------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVV 159 (332)
Q Consensus 100 ~~~i~~~~~-~g~-~v~~~v------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~ 159 (332)
++.++.+.+ .+- ++++.+ ...+.++.+.+.|+|.|++.+.+..|+..+ ..+.++.++.
T Consensus 112 ~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g--~~~~~i~~i~ 189 (241)
T PRK13585 112 PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG--VNTEPVKELV 189 (241)
T ss_pred hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC--CCHHHHHHHH
Confidence 234444433 221 232221 224667788889999999988765555322 3577888888
Q ss_pred HHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 160 DLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 160 ~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+.+ ++||++.|||.+.+++.+++.+||+||++||+++....
T Consensus 190 ~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 190 DSV---DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred HhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 877 79999999999999999999999999999999988766
No 143
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.91 E-value=1.2e-08 Score=90.38 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=82.0
Q ss_pred HHHHHHHHhC---CCEEEE-ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 EELVLEAHSA---GVKVVP-QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.+.++..+.. |..+++ ...++..++++.+.|||+|-.-|..-|+.. + .....++..+++.. ++|||+.|||
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~-g-i~~~~~i~~i~e~~---~vpVIveaGI 184 (250)
T PRK00208 110 IETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGL-G-LLNPYNLRIIIEQA---DVPVIVDAGI 184 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCC-C-CCCHHHHHHHHHhc---CCeEEEeCCC
Confidence 3566666554 999995 456899999999999999954333323222 2 22366677777764 7999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
++++++.+++.+|||||.+||++..++.-. ....|++++..
T Consensus 185 ~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 185 GTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998543322 24555655554
No 144
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.90 E-value=7.3e-08 Score=89.74 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=116.0
Q ss_pred HHHHHHHhCCC--ceeecCCCCC--CHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc-
Q 020013 26 ELVAAVANAGG--LGLLRAPDWE--APDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS- 99 (332)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~~~--~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~- 99 (332)
++|.+..++|. +.++.-..|. +.+. ++++|+. ++.|+-..=|+.+ .-++..+...|+|+|.+-....+
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~----L~~vr~~~v~lPvLrKDFIID--~yQI~eAr~~GADAVLLIaaiL~~ 216 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFEN----LEAIRNAGVKCPLLCKEFIVD--AWQIYYARSKGADAILLIAAVLPD 216 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHH----HHHHHHcCCCCCEeeccccCC--HHHHHHHHHcCCCcHHHHHHhCCH
Confidence 45555555453 4554332221 3444 4566665 6777665444432 45778888899999977544333
Q ss_pred ---HHHHHHHHhCCCEEEEecCCHHHHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHH-HHhCCCCCcEEeecC
Q 020013 100 ---EELVLEAHSAGVKVVPQVGSFDEARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVV-DLIGDRDIPIIAAGG 174 (332)
Q Consensus 100 ---~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~-~~~~~~~iPviaaGG 174 (332)
.++++..+..|+.++..|++.+|+..+.+. |++.|-+.++.-.........+..|++... +.++..++-+|+.+|
T Consensus 217 ~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESG 296 (338)
T PLN02460 217 LDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESG 296 (338)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCC
Confidence 356667778899999999999999999998 999999988754332211112333443110 012112566899999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
|.+++|+..+..+|+|+|.+|+.||.++.
T Consensus 297 I~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 297 LFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 99999999999999999999999998754
No 145
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.90 E-value=1.3e-07 Score=92.54 Aligned_cols=178 Identities=22% Similarity=0.228 Sum_probs=114.4
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHH---HHHHHHHHHHhhcCCcEEEEe---ecCCCCHHHHHH
Q 020013 12 GIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPD---YLRDLIRKTRSLTERPFGVGV---VLAFPHNENIKA 82 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e---~~~~~i~~~r~~~~~p~gvnl---~~~~~~~~~~~~ 82 (332)
|-+|-.+- ..+++-...+.+. +|+-.+..+ + +. ...+.++++++....++-+|- +.. + ...++.
T Consensus 4 ~~l~~alD--~~~~~~~~~~~~~~~~~Gv~~ie~g-~--p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g-~~~v~~ 76 (430)
T PRK07028 4 PILQVALD--LLELDRAVEIAKEAVAGGADWIEAG-T--PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-G-AIEVEM 76 (430)
T ss_pred ceEEEEec--cCCHHHHHHHHHHHHhcCCcEEEeC-C--HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-h-HHHHHH
Confidence 44555554 3444444445554 778788652 2 22 123344555443333444432 111 2 347889
Q ss_pred HHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEe---cCC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 83 ILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ---VGS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~---v~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
+.+.+++.|+++...+ ..+.++.+++.|++++.. +.+ .+.++.+.+.|+|+|.+. +...+.. .....+..+
T Consensus 77 a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~-~~~~~~~~l 154 (430)
T PRK07028 77 AAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQM-LGKDPLELL 154 (430)
T ss_pred HHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhh-cCCChHHHH
Confidence 9999999999863211 235667788899988763 333 566788889999999764 2111111 112335677
Q ss_pred HHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 156 PMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+++++.. ++||++.||| +.+++.+++..||+++.+||.++..+
T Consensus 155 ~~l~~~~---~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~ 197 (430)
T PRK07028 155 KEVSEEV---SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSA 197 (430)
T ss_pred HHHHhhC---CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCC
Confidence 7777765 6999999999 79999999999999999999998753
No 146
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.87 E-value=5.7e-08 Score=86.89 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=102.9
Q ss_pred HHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEecC---CHHHHHH
Q 020013 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQVG---SFDEARK 125 (332)
Q Consensus 53 ~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v~---s~~~a~~ 125 (332)
+.++.+|+.+ +.|+-+.+++..+ ...++.+.+.|+|.|.+|+... +.+.++.+++.|.++...+. +.++...
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~p-~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~ 132 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSNP-EKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFP 132 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCH-HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHH
Confidence 3466777766 7889999997766 5678899999999999996432 34667778888988775543 5566655
Q ss_pred HHH-cCCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 126 AVN-AGVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 126 a~~-~g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..+ ..+|.|++-..+.| |... ....+..++++++..+ +..+.++||| +.+++..+..+|||.+++||++..+
T Consensus 133 ~l~~~~vD~Vl~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~--~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 133 LIDTDLVDMVLVMTVEPGFGGQSF-MHDMMPKVRELRKRYP--HLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKA 207 (228)
T ss_pred HHccchhhhHHhhhcccCCCCcEe-cHHHHHHHHHHHHhcc--cCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCC
Confidence 543 34888865333322 3321 1234566677766543 4779999999 8999999999999999999997653
No 147
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.87 E-value=6.6e-08 Score=98.55 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=116.6
Q ss_pred HHHHHHHhCCC--ceeecCCCC--CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--
Q 020013 26 ELVAAVANAGG--LGLLRAPDW--EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS-- 99 (332)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~~--~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~-- 99 (332)
+++....++|. +.++.-+.+ -+.+. +..+|+.++.|+-..=|+. ++.++..+...|+|+|.+.....+
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~----l~~vr~~v~~PvLrKDFIi--d~~QI~ea~~~GADavLLI~~~L~~~ 147 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDD----FDKVRAAVHIPVLRKDFIV--TDYQIWEARAHGADLVLLIVAALDDA 147 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHH----HHHHHHhCCCCEEeccccC--CHHHHHHHHHcCCCEeehhHhhcCHH
Confidence 45555555553 555533222 23444 4556666677865543332 356788888999999988654333
Q ss_pred --HHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 --EELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 --~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.++++..++.|+.++..|++.+|+.++.+.|++.|-+.++.--... ..+....++...++. ++.+|+.+||.+
T Consensus 148 ~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~----vd~~~t~~L~~~ip~-~~~~VsESGI~~ 222 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLK----VDVNKYNELAADLPD-DVIKVAESGVFG 222 (695)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccce----eCHHHHHHHHhhCCC-CcEEEEcCCCCC
Confidence 3556667788999999999999999999999999999776432211 112222233333332 678999999999
Q ss_pred HHHHHHHHHcCcceeeeccccccCcc
Q 020013 178 ARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
++|+..+..+|+|+|.+|++||.++.
T Consensus 223 ~~d~~~l~~~G~davLIGeslm~~~d 248 (695)
T PRK13802 223 AVEVEDYARAGADAVLVGEGVATADD 248 (695)
T ss_pred HHHHHHHHHCCCCEEEECHHhhCCCC
Confidence 99999999999999999999999854
No 148
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.85 E-value=1.4e-07 Score=84.68 Aligned_cols=139 Identities=27% Similarity=0.364 Sum_probs=93.5
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-CCCE-EEE--ec----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-AGVK-VVP--QV---------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~g~~-v~~--~v---------- 117 (332)
+.++++++.++.|+-++=-+. ..+.++.+.+.+++.|.++... ..+++++.+.+ .+.. ++. .+
T Consensus 64 ~~~~~i~~~~~~pv~~~ggi~--~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~ 141 (232)
T TIGR03572 64 ELISNLAEECFMPLTVGGGIR--SLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYK 141 (232)
T ss_pred HHHHHHHHhCCCCEEEECCCC--CHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEE
Confidence 445666665666765532221 2445666777899998876321 12344444433 2221 221 11
Q ss_pred ------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH-H
Q 020013 118 ------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA-A 184 (332)
Q Consensus 118 ------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~-a 184 (332)
...+.++.+.+.|+|.|++.+.+..|+..+ ..+.++.++++.+ ++||+++|||.+.+++.+ +
T Consensus 142 v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g--~~~~~~~~i~~~~---~ipvia~GGi~s~~di~~~l 216 (232)
T TIGR03572 142 VYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG--YDLELIKTVSDAV---SIPVIALGGAGSLDDLVEVA 216 (232)
T ss_pred EEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC--CCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHH
Confidence 124666788899999999998766555322 3478888888876 799999999999999999 6
Q ss_pred HHcCcceeeecccc
Q 020013 185 LSLGAQGICLGTRF 198 (332)
Q Consensus 185 l~~GA~gV~~GT~f 198 (332)
...||++|++||+|
T Consensus 217 ~~~gadgV~vg~a~ 230 (232)
T TIGR03572 217 LEAGASAVAAASLF 230 (232)
T ss_pred HHcCCCEEEEehhh
Confidence 67999999999997
No 149
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.85 E-value=1.7e-07 Score=89.59 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=124.7
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC-CC--ceeecCCCCCCHHHH-HHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA-GG--LGLLRAPDWEAPDYL-RDLIRKTRSL-TERPFGVGVVLAFPHNENIKAIL 84 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a-Gg--lG~i~~~~~~~~e~~-~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~ 84 (332)
+.|.+|-.+. ..+.+-+..+.+. +. .+++..+ +.-.-.. -+.++.+++. ++.++-+.+.+.++..-.++.+.
T Consensus 171 ~~p~L~vALD--~~~~~~A~~i~~~l~~~~~~~iKvG-~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a 247 (391)
T PRK13307 171 DPPYLQVALD--LPDLEEVERVLSQLPKSDHIIIEAG-TPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAA 247 (391)
T ss_pred ccceEEEecC--CCCHHHHHHHHHhcccccceEEEEC-HHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHH
Confidence 3588888885 5666666666543 32 4555443 1000000 2346667665 56789999998876443477888
Q ss_pred hcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEe---cCCHHHHHHHHHcCCCEEEEe-cCCCCcccCCCCchhhhHHH
Q 020013 85 SEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQ---VGSFDEARKAVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPM 157 (332)
Q Consensus 85 ~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~---v~s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~ 157 (332)
+.|++.+.+|.... ....++.+++.|++++.. +.++.+....+..++|+|.+. +.+.++. ...+..+.+
T Consensus 248 ~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~----~~~~~kI~~ 323 (391)
T PRK13307 248 DATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGT----EHAWGNIKE 323 (391)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcc----cchHHHHHH
Confidence 99999999995322 234667788899998873 335555555557899999884 4554432 234566777
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+++.. .+++|.++||| +.+++.+++.+|||.+++||++..++
T Consensus 324 ikk~~--~~~~I~VdGGI-~~eti~~l~~aGADivVVGsaIf~a~ 365 (391)
T PRK13307 324 IKKAG--GKILVAVAGGV-RVENVEEALKAGADILVVGRAITKSK 365 (391)
T ss_pred HHHhC--CCCcEEEECCc-CHHHHHHHHHcCCCEEEEeHHHhCCC
Confidence 76642 26899999999 79999999999999999999977543
No 150
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=98.84 E-value=2.4e-07 Score=94.23 Aligned_cols=185 Identities=15% Similarity=0.185 Sum_probs=124.1
Q ss_pred CCCcHHHHHHHHhCC--Cceeec---CCCCCCHHH-HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 21 DISGPELVAAVANAG--GLGLLR---APDWEAPDY-LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 21 g~s~~~la~avs~aG--glG~i~---~~~~~~~e~-~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
|+++++.+..++++| .+||+. ++++.+++. .+++.+.++. ..+..|.++++.+.++..+.+.+.+.|+|++|
T Consensus 9 Git~~eda~~a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~--~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 9 GIKDSALISKAVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRK--AGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred CCCcHHHHHHHHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCC--CCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 588999999999998 599995 345677887 6666665542 12345788888775666777778899999999
Q ss_pred cCCCc---HHHHHHHHhCCCEEEEec--CCHHHHHHH--HHcCCCEEEEecC--CCCcccCCCCchhhhHHHHHHHhCCC
Q 020013 95 WGEYS---EELVLEAHSAGVKVVPQV--GSFDEARKA--VNAGVDAIIVQGR--EAGGHVIGQDGLISLLPMVVDLIGDR 165 (332)
Q Consensus 95 ~g~~~---~~~i~~~~~~g~~v~~~v--~s~~~a~~a--~~~g~D~ivv~G~--eaGGh~~~~~~~~~ll~~i~~~~~~~ 165 (332)
|..+ .+.++.+++.+++++..+ .+..+...+ ...-+|+++++.. ..||. |....|.+++.+. .
T Consensus 87 -G~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt--G~~fdw~~~~~~~--~--- 158 (610)
T PRK13803 87 -GAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGS--GKSFDWEKFYNYN--F--- 158 (610)
T ss_pred -CCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCC--CCccChHHhhhcc--c---
Confidence 6666 778888887777777533 232222222 2234899999753 23443 4445677765431 1
Q ss_pred CCcEEeecCcCCHHHHHHHHHc-Ccc--eeeeccccccCccCCCCHHHHHHHhc
Q 020013 166 DIPIIAAGGIVDARGYVAALSL-GAQ--GICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 166 ~iPviaaGGI~~~~~v~~al~~-GA~--gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+.|++.+||| +++|+.+++.. ... ||-+-|.+=.++.-.-.+..|+-+..
T Consensus 159 ~~p~iLAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~~ki~~fi~~ 211 (610)
T PRK13803 159 KFPFFLSGGL-SPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKLTLLKSFITN 211 (610)
T ss_pred CCcEEEEeCC-CHHHHHHHHhhhCCCceEEEccCcccCCCCCcCHHHHHHHHHH
Confidence 5799999999 89999999984 556 89998887543333333444444433
No 151
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.82 E-value=1.6e-07 Score=84.16 Aligned_cols=144 Identities=25% Similarity=0.322 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-C--CCEEEEec----------
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-A--GVKVVPQV---------- 117 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~--g~~v~~~v---------- 117 (332)
.+.++++++.++.|+-++=.+. ..+.++.+.+.|++.|.+.... ..++.++.+.+ . .+.+-..+
T Consensus 63 ~~~i~~i~~~~~~pv~~~GGI~--~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~ 140 (233)
T PRK00748 63 LELIEAIVKAVDIPVQVGGGIR--SLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGW 140 (233)
T ss_pred HHHHHHHHHHCCCCEEEcCCcC--CHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccC
Confidence 3456666666667776543332 2566778888899998876321 11223333322 1 12221111
Q ss_pred -----CC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cc
Q 020013 118 -----GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQ 190 (332)
Q Consensus 118 -----~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~ 190 (332)
.+ .+.++.+.+.|+|.|++.+....|...+ ..+.++.++.+.. ++|||++|||.+.+++.+++..| |+
T Consensus 141 ~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G--~d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~ 215 (233)
T PRK00748 141 LETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG--PNVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVE 215 (233)
T ss_pred eecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC--CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCcc
Confidence 12 3445667778999998877655554323 4588889988876 79999999999999999999998 99
Q ss_pred eeeeccccccCc
Q 020013 191 GICLGTRFVASE 202 (332)
Q Consensus 191 gV~~GT~fl~t~ 202 (332)
||++|++|+.-.
T Consensus 216 gv~vg~a~~~~~ 227 (233)
T PRK00748 216 GVIVGRALYEGK 227 (233)
T ss_pred EEEEEHHHHcCC
Confidence 999999988653
No 152
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=1.7e-07 Score=79.36 Aligned_cols=143 Identities=17% Similarity=0.274 Sum_probs=104.7
Q ss_pred HHHHHHhhcCCc--EEEEeecCCCCHHHHHHHHhcCCcEEEEccCC--CcHHHHHHHHhCCCEEEEec--C-CHHHHHHH
Q 020013 54 LIRKTRSLTERP--FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE--YSEELVLEAHSAGVKVVPQV--G-SFDEARKA 126 (332)
Q Consensus 54 ~i~~~r~~~~~p--~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~--~~~~~i~~~~~~g~~v~~~v--~-s~~~a~~a 126 (332)
.++.+|+.++++ |-+++++..| +++++.+..++++.+.+|... .+.++++++|+.|+++...+ . +++.+..
T Consensus 53 vV~slR~~~~~~~ffD~HmMV~~P-eq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~- 130 (224)
T KOG3111|consen 53 VVESLRKHTGADPFFDVHMMVENP-EQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEP- 130 (224)
T ss_pred HHHHHHhccCCCcceeEEEeecCH-HHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHH-
Confidence 366777776665 8899999877 788999999999999998532 25689999999999987654 3 4444433
Q ss_pred HHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE-eecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 127 VNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGDRDIPII-AAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 127 ~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi-aaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...-+|.+++- .+..||+. .....+..+..+++.. .-+.| ..||+ .++++.++..+||+.++.||+.+.+..
T Consensus 131 ~~~~~D~vLvMtVePGFGGQk-Fme~mm~KV~~lR~ky---p~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 131 LAEHVDMVLVMTVEPGFGGQK-FMEDMMPKVEWLREKY---PNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAAD 205 (224)
T ss_pred hhccccEEEEEEecCCCchhh-hHHHHHHHHHHHHHhC---CCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCC
Confidence 33468988874 34446654 2223455555666544 23444 89999 799999999999999999999987754
No 153
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.2e-07 Score=87.78 Aligned_cols=180 Identities=24% Similarity=0.299 Sum_probs=118.1
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHh--h----cCCcEEEEeecCCCCHHHHHH--HHh
Q 020013 14 VQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRS--L----TERPFGVGVVLAFPHNENIKA--ILS 85 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~--~----~~~p~gvnl~~~~~~~~~~~~--~~~ 85 (332)
+.|||- ..|...+..=+-.. +.-...++ +.-.+.+... .+.|. + .+.|+-|.+-.+++ +..++. +++
T Consensus 22 i~APMv-d~S~l~fR~L~R~y-~~~l~yTp-Mi~a~~fv~~-ek~r~~~~st~~~D~PLIvQf~~ndp-~~ll~Aa~lv~ 96 (358)
T KOG2335|consen 22 IVAPMV-DYSELAFRRLVRLY-GADLLYTP-MIHAKTFVHS-EKYRDSELSTSPEDRPLIVQFGGNDP-ENLLKAARLVQ 96 (358)
T ss_pred ccCCcc-cccHHHHHHHHHHh-CCceEech-HHHHHHHhcC-ccchhhhcccCCCCCceEEEEcCCCH-HHHHHHHHHhh
Confidence 689996 68887776655554 34444332 1111111110 11111 1 26899999888765 222222 223
Q ss_pred cCCcEEEEccCCCcH-------------------HHHHHHHh-CCCEEEEecC-------CHHHHHHHHHcCCCEEEEec
Q 020013 86 EKVAVLQVSWGEYSE-------------------ELVLEAHS-AGVKVVPQVG-------SFDEARKAVNAGVDAIIVQG 138 (332)
Q Consensus 86 ~~~~~I~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~-------s~~~a~~a~~~g~D~ivv~G 138 (332)
--.|.|.++.|+|.. ++++.+++ .+.+|-.++- |++.++..+++|++.+.|.|
T Consensus 97 ~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG 176 (358)
T KOG2335|consen 97 PYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG 176 (358)
T ss_pred hhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec
Confidence 335999999888531 12233332 3566655542 67889999999999999999
Q ss_pred CCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccccC
Q 020013 139 REA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVAS 201 (332)
Q Consensus 139 ~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~t 201 (332)
+.. .|+. .....|+.+..+++.++ ++||++.|+|.+.+++..++. .|||||+.|...+..
T Consensus 177 Rtr~~kg~~-~~pad~~~i~~v~~~~~--~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~N 239 (358)
T KOG2335|consen 177 RTREQKGLK-TGPADWEAIKAVRENVP--DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYN 239 (358)
T ss_pred ccHHhcCCC-CCCcCHHHHHHHHHhCc--CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcC
Confidence 732 3432 23456899999999884 499999999999999999998 999999999886644
No 154
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.81 E-value=2e-07 Score=84.19 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=109.2
Q ss_pred cHHHHHHHHhCCCceee--cCC--CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC-
Q 020013 24 GPELVAAVANAGGLGLL--RAP--DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY- 98 (332)
Q Consensus 24 ~~~la~avs~aGglG~i--~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~- 98 (332)
..+++....++|.=.++ ... ....+ .-.+.++++++..+.|+-++=-+. ..+.++.+++.+++.|.++.+..
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~~-~~~~~i~~i~~~~~~pv~~~GGI~--s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGRE-TMLDVVERVAEEVFIPLTVGGGIR--SLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccCc-ccHHHHHHHHHhCCCCEEEeCCCC--CHHHHHHHHHcCCceEEECchhhh
Confidence 34777777777632222 111 11111 123566777766667766543332 24566677778999988763321
Q ss_pred cHHHHHHH-HhCC---CEEEE---------------------ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 99 SEELVLEA-HSAG---VKVVP---------------------QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 99 ~~~~i~~~-~~~g---~~v~~---------------------~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
.+++++.+ ++.+ +.+-. ...+.+.++.+.+.|+|.|++.+....|+..+ ..+.
T Consensus 106 ~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g--~~~~ 183 (243)
T cd04731 106 NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKG--YDLE 183 (243)
T ss_pred ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCC--CCHH
Confidence 12344333 3222 22111 11234566778899999999988766665322 3578
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccCc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVASE 202 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t~ 202 (332)
++.++.+.. ++||+++|||.+++++.+++.. |+|+|++|++|..-.
T Consensus 184 ~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 184 LIRAVSSAV---NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred HHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 888888776 7999999999999999999997 999999999987653
No 155
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.79 E-value=2e-07 Score=97.04 Aligned_cols=169 Identities=14% Similarity=0.236 Sum_probs=113.2
Q ss_pred HHHHHHHhCCCceeecCCC-CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHH
Q 020013 26 ELVAAVANAGGLGLLRAPD-WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVL 104 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~-~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~ 104 (332)
+.+.+..++ |+..|.... -.+.+.+.+..+++++++.. +++-++++ +.++++.+.++| |+++..+.+....+
T Consensus 23 ~~l~~~l~~-g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~-~~~~liin----d~~~la~~~~~d-VHlg~~dl~~~~~r 95 (755)
T PRK09517 23 GIVDSAISG-GVSVVQLRDKNAGVEDVRAAAKELKELCDA-RGVALVVN----DRLDVAVELGLH-VHIGQGDTPYTQAR 95 (755)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHHHH-hCCeEEEe----ChHHHHHHcCCC-eecCCCcCCHHHHH
Confidence 344445454 466665411 13556677777777766532 45666664 457888899999 88876555555666
Q ss_pred HHHhCCCEEEEecCCHHHHHHHH----Hc---CCCEEEEecC-CCCcccCCC-CchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 105 EAHSAGVKVVPQVGSFDEARKAV----NA---GVDAIIVQGR-EAGGHVIGQ-DGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 105 ~~~~~g~~v~~~v~s~~~a~~a~----~~---g~D~ivv~G~-eaGGh~~~~-~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
++...+..+...+++.+++..+. .. |+||+.+-.. ....|.+.. .-.+..+.++++.....++||++.|||
T Consensus 96 ~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI 175 (755)
T PRK09517 96 RLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV 175 (755)
T ss_pred HhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC
Confidence 65555677788999999886643 22 4999998322 122232111 123667788777662113999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCc
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+++.++++.||+||.+.++++.++
T Consensus 176 -~~~~~~~~~~~Ga~giAvisai~~a~ 201 (755)
T PRK09517 176 -GLRNAAELAATGIDGLCVVSAIMAAA 201 (755)
T ss_pred -CHHHHHHHHHcCCCEEEEehHhhCCC
Confidence 89999999999999999999999654
No 156
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.76 E-value=3.8e-07 Score=83.19 Aligned_cols=142 Identities=26% Similarity=0.328 Sum_probs=95.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-CC---CEEEEe-----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-AG---VKVVPQ----------- 116 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~g---~~v~~~----------- 116 (332)
+.++++.+.++.|+-++=-+. ..+.++.+.+.|++.|.++... ..+++++.+.+ .+ +.+-..
T Consensus 64 ~~i~~i~~~~~~pv~~gGGi~--s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v 141 (258)
T PRK01033 64 ELIENLASECFMPLCYGGGIK--TLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDV 141 (258)
T ss_pred HHHHHHHHhCCCCEEECCCCC--CHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEE
Confidence 455666555566654432121 2455666677899998876321 12334444322 21 111111
Q ss_pred ----------cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-
Q 020013 117 ----------VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL- 185 (332)
Q Consensus 117 ----------v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al- 185 (332)
....+.++.+.+.|++.+++.+....|...| ..+.++.++.+.. ++|||++|||++.+++.+++
T Consensus 142 ~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G--~d~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~ 216 (258)
T PRK01033 142 YTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG--YDLELLKSFRNAL---KIPLIALGGAGSLDDIVEAIL 216 (258)
T ss_pred EEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC--CCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHH
Confidence 1123455677899999999988766554323 3688899988876 79999999999999999999
Q ss_pred HcCcceeeeccccccC
Q 020013 186 SLGAQGICLGTRFVAS 201 (332)
Q Consensus 186 ~~GA~gV~~GT~fl~t 201 (332)
..|++||.+|++|.+.
T Consensus 217 ~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 217 NLGADAAAAGSLFVFK 232 (258)
T ss_pred HCCCCEEEEcceeeeC
Confidence 7999999999999997
No 157
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.75 E-value=3.7e-07 Score=83.11 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=110.2
Q ss_pred CcH-HHHHHHHhCCCceeecCCCCC----CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 23 SGP-ELVAAVANAGGLGLLRAPDWE----APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 23 s~~-~la~avs~aGglG~i~~~~~~----~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
.+| +++....+.|.=.+... ... .-..-.+.++++++.++.|+-++=-+. ..+.++.++..|++.|.++-..
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~-Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~--s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFL-DITASSEGRTTMIDVVERTAETVFIPLTVGGGIK--SIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEE-cCCcccccChhhHHHHHHHHHhcCCCEEEECCCC--CHHHHHHHHHcCCCEEEEChhH
Confidence 355 67777766665333322 111 111223456666666666765532222 2456777788899998875211
Q ss_pred -CcHHHHHHHHh-CC-CEEEEec--------------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 98 -YSEELVLEAHS-AG-VKVVPQV--------------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 98 -~~~~~i~~~~~-~g-~~v~~~v--------------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
..+++++.+.+ .| -+++..+ ...+.++.+.+.|+|.|++.+.+..|+..+
T Consensus 107 ~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g- 185 (254)
T TIGR00735 107 VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSG- 185 (254)
T ss_pred hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCC-
Confidence 12344444432 23 1222111 123455677889999999988777666422
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASE 202 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~ 202 (332)
..+.++.++++.. ++||+++|||.+.+++.+++..| ++||++|++|....
T Consensus 186 -~~~~~~~~i~~~~---~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 186 -YDLELTKAVSEAV---KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred -CCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 4578888888876 79999999999999999999988 99999999986553
No 158
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.75 E-value=7.3e-07 Score=80.51 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=105.8
Q ss_pred HHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHH
Q 020013 26 ELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEEL 102 (332)
Q Consensus 26 ~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~ 102 (332)
++|......|. +=++-.-.....+.-...++++.+....|+-++=-+. ..+.++.+++.|++-+.++... ..+++
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGir--s~edv~~~l~~Ga~kvviGs~~l~~p~l 113 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIR--DDESLEAALATGCARVNIGTAALENPEW 113 (241)
T ss_pred HHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCC--CHHHHHHHHHCCCCEEEECchHhCCHHH
Confidence 56666666664 2222110001111123566666665566765532222 2577888899999988765221 12233
Q ss_pred HHHH-HhCCCEEEE--ec--------------CC-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC
Q 020013 103 VLEA-HSAGVKVVP--QV--------------GS-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD 164 (332)
Q Consensus 103 i~~~-~~~g~~v~~--~v--------------~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~ 164 (332)
++.+ +..+-.++. .+ .+ .+.++...+.|++.|++.+...-|...+ ..+.++.++.+..
T Consensus 114 ~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G--~d~~~i~~i~~~~-- 189 (241)
T PRK14024 114 CARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG--PNLELLREVCART-- 189 (241)
T ss_pred HHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC--CCHHHHHHHHhhC--
Confidence 3332 222211211 11 11 3456777889999999988765443223 3588999998876
Q ss_pred CCCcEEeecCcCCHHHHHHHHH---cCcceeeeccccccCc
Q 020013 165 RDIPIIAAGGIVDARGYVAALS---LGAQGICLGTRFVASE 202 (332)
Q Consensus 165 ~~iPviaaGGI~~~~~v~~al~---~GA~gV~~GT~fl~t~ 202 (332)
++|||++|||.+.+++.++++ .|++||++|++++...
T Consensus 190 -~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 190 -DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred -CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 799999999999999999875 4999999999988664
No 159
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.72 E-value=5.9e-07 Score=81.69 Aligned_cols=171 Identities=22% Similarity=0.311 Sum_probs=106.7
Q ss_pred CcH-HHHHHHHhCCCcee--ecCCC--CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC
Q 020013 23 SGP-ELVAAVANAGGLGL--LRAPD--WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE 97 (332)
Q Consensus 23 s~~-~la~avs~aGglG~--i~~~~--~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~ 97 (332)
++| +++....+.|.--+ ..... ... ..-.+.++++++.++.|+-++=-+. ..+.++.+++.+++.|.++...
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~~ipv~~~GGi~--s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQVFIPLTVGGGIR--SVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhCCCCEEeeCCCC--CHHHHHHHHHcCCCEEEEChhH
Confidence 344 67777777664222 21110 011 1223456666666666765542222 2466777777899999886321
Q ss_pred -CcHHHHHHHHh-CC---CEEEEec----------------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCc
Q 020013 98 -YSEELVLEAHS-AG---VKVVPQV----------------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDG 150 (332)
Q Consensus 98 -~~~~~i~~~~~-~g---~~v~~~v----------------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~ 150 (332)
..+++++.+.+ .| +.+...+ ...+.++.+.+.|+|.+++.+....|...+ .
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g--~ 184 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNG--Y 184 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCC--c
Confidence 12244444433 22 1221111 113455778889999999976544343212 3
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-CcceeeeccccccC
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFVAS 201 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl~t 201 (332)
.+.++.++.+.. ++|||++|||.+.+++.+++.. |++||++||+|...
T Consensus 185 d~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 185 DLELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 588889988876 7999999999999999999975 99999999998765
No 160
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.66 E-value=2.5e-06 Score=78.63 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=117.1
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCC-HHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEA-PDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAV 90 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~-~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~ 90 (332)
.+.+.+.+.++-++- ..++|-. . .+.. .+.+...+..+.+..+ .|+.+++= .-...+.++.+++.|.+.
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlD-H~~~~e~i~~ai~~Gf~s 100 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLD-HGSSYESCIKAIKAGFSS 100 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECC-CCCCHHHHHHHHHcCCCE
Confidence 456777777776552 2344421 1 1222 4556666666555556 78888762 122357788889999999
Q ss_pred EEEccCCCcH-HH-------HHHHHhCCCEEE-----------------EecCCHHHHHHHHH-cCCCEEEEe-cCCCCc
Q 020013 91 LQVSWGEYSE-EL-------VLEAHSAGVKVV-----------------PQVGSFDEARKAVN-AGVDAIIVQ-GREAGG 143 (332)
Q Consensus 91 I~~~~g~~~~-~~-------i~~~~~~g~~v~-----------------~~v~s~~~a~~a~~-~g~D~ivv~-G~eaGG 143 (332)
|.+.....+. +. ++.++..|+.|- ...+++++++.+.+ .|+|++.+. |+--|-
T Consensus 101 Vmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~ 180 (282)
T TIGR01859 101 VMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGK 180 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 9986333232 22 333455566553 23568999999986 899999873 442221
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeec--CcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.++.++++.+ ++|+++-| || +.+++.+++..|+++|-++|.+..+
T Consensus 181 ~~~~~~l~~e~L~~i~~~~---~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l~~a 236 (282)
T TIGR01859 181 YKGEPGLDFERLKEIKELT---NIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDCRIA 236 (282)
T ss_pred cCCCCccCHHHHHHHHHHh---CCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHHHHH
Confidence 1111223488899998887 79999999 99 7899999999999999999997644
No 161
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.66 E-value=2.6e-07 Score=90.20 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=102.5
Q ss_pred HHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH----HHHHHHHhCCCEEEEecCCHHHHHHHHHcC
Q 020013 55 IRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE----ELVLEAHSAGVKVVPQVGSFDEARKAVNAG 130 (332)
Q Consensus 55 i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g 130 (332)
++.+|+.++.|+-..=|+. ++.++..+...|+|+|.+-....++ ++++..++.|+.++..|++.+|+..+.+.|
T Consensus 102 l~~vr~~v~~PvLrKDFii--d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~ 179 (454)
T PRK09427 102 LPIVRAIVTQPILCKDFII--DPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALG 179 (454)
T ss_pred HHHHHHhCCCCEEeccccC--CHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCC
Confidence 4556666667765543332 3567888888999999875443332 466777888999999999999999999999
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
++.|-+.++.--... ..+..-.++...++. ++.+|+.+||.+++++..+. .|+|||.+|+++|.++.
T Consensus 180 a~iiGiNnRdL~t~~----vd~~~~~~l~~~ip~-~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~~d 246 (454)
T PRK09427 180 AKVIGINNRNLRDLS----IDLNRTRELAPLIPA-DVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAEDD 246 (454)
T ss_pred CCEEEEeCCCCccce----ECHHHHHHHHhhCCC-CcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCCCC
Confidence 999988777543221 112222233333332 67899999999999998865 58999999999999865
No 162
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.61 E-value=3.6e-07 Score=80.17 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=75.8
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+.+.|..|++-++ ++-.+++.++.||.+|---|.--|... |- .....++.+++.. ++|||..+||+++.++.
T Consensus 117 e~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~-Gi-~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 117 EILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGR-GI-QNPYNLRIIIERA---DVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT----S-STHHHHHHHHHHG---SSSBEEES---SHHHHH
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCc-CC-CCHHHHHHHHHhc---CCcEEEeCCCCCHHHHH
Confidence 345568999999886 678899999999999988766544332 22 2346677888877 89999999999999999
Q ss_pred HHHHcCcceeeeccccccCccCC-CCHHHHHHHhc
Q 020013 183 AALSLGAQGICLGTRFVASEESY-AHPEYKRKLVE 216 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~~ 216 (332)
.++++|||+|.+.|++..+++.. .-..+|.++..
T Consensus 192 ~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 192 QAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 99999999999999997765532 23455655553
No 163
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.60 E-value=7.8e-07 Score=77.50 Aligned_cols=185 Identities=18% Similarity=0.270 Sum_probs=119.5
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
.+.++|.+.-...+|...++.... +-+|..++ ++.+....|.-..+-+-. ....+++...|
T Consensus 26 DV~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~----eim~aVsIPVMAKvRIGH--~~EA~iLealg 99 (296)
T COG0214 26 DVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIE----EIMDAVSIPVMAKVRIGH--FVEAQILEALG 99 (296)
T ss_pred EecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHH----HHHHhcccceeeeeecch--hHHHHHHHHhC
Confidence 478999999888899988886532 22344433 333333455433322211 12344566779
Q ss_pred CcEEEEccCCCcHHHHHHHH--hCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC-----------------C-
Q 020013 88 VAVLQVSWGEYSEELVLEAH--SAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI-----------------G- 147 (332)
Q Consensus 88 ~~~I~~~~g~~~~~~i~~~~--~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~-----------------~- 147 (332)
+|+|.-+-=..|.+..-.+. +..++.++.+.+.-||.+-...|+..|-..|--+.|... .
T Consensus 100 VD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~ 179 (296)
T COG0214 100 VDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSM 179 (296)
T ss_pred CCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHcc
Confidence 99985431112333333332 235677788889999998888899888776643333210 0
Q ss_pred -----------CCchhhhHHHHHHHhCCCCCcE--EeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHH
Q 020013 148 -----------QDGLISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 148 -----------~~~~~~ll~~i~~~~~~~~iPv--iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
-...+.|+.++.+.- ++|| +++|||.||.|.+-++.+|||||.+||.++.+. .++.+.++|
T Consensus 180 ~edel~~~Ak~~~~p~elv~~~~~~g---rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~---~P~~~A~AI 253 (296)
T COG0214 180 TEDELYVVAKELQAPYELVKEVAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS---NPEKRAKAI 253 (296)
T ss_pred CHHHHHHHHHHhCChHHHHHHHHHhC---CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCC---CHHHHHHHH
Confidence 012355666665543 5665 599999999999999999999999999999774 477888888
Q ss_pred hcC
Q 020013 215 VEM 217 (332)
Q Consensus 215 ~~~ 217 (332)
+++
T Consensus 254 V~A 256 (296)
T COG0214 254 VEA 256 (296)
T ss_pred HHH
Confidence 876
No 164
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.59 E-value=2.5e-06 Score=76.63 Aligned_cols=175 Identities=20% Similarity=0.262 Sum_probs=104.3
Q ss_pred CCccceec--CCCCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEE--E----Eeec-CCCC-
Q 020013 8 GFEYGIVQ--APLGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFG--V----GVVL-AFPH- 76 (332)
Q Consensus 8 ~~~~Pii~--apM~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~g--v----nl~~-~~~~- 76 (332)
-+++-+.. +|+. +..+++ ++..+.+.|.-++... |..++...+... .+.++- + ++.. ..+.
T Consensus 5 ~~Dh~~~~~~~p~~-~~~d~~~~~~~~~~~g~~av~v~-----~~~~~~~~~~~~--~~~~~i~~~~~~~~i~~p~~~~~ 76 (235)
T cd00958 5 AVDHGIEHGFGPNP-GLEDPEETVKLAAEGGADAVALT-----KGIARAYGREYA--GDIPLIVKLNGSTSLSPKDDNDK 76 (235)
T ss_pred ecCCcccccCCCCc-cccCHHHHHHHHHhcCCCEEEeC-----hHHHHhcccccC--CCCcEEEEECCCCCCCCCCCCch
Confidence 35677777 8987 677776 5555555554444332 222222111121 111221 1 1111 1111
Q ss_pred --HHHHHHHHhcCCcEE--EEccCCCcH--------HHHHHHHhCCCEEEEecCC----------HHH----HHHHHHcC
Q 020013 77 --NENIKAILSEKVAVL--QVSWGEYSE--------ELVLEAHSAGVKVVPQVGS----------FDE----ARKAVNAG 130 (332)
Q Consensus 77 --~~~~~~~~~~~~~~I--~~~~g~~~~--------~~i~~~~~~g~~v~~~v~s----------~~~----a~~a~~~g 130 (332)
...++.+.+.|++.| ++..+.... ++.+.+++.|++++..+.. .++ ++.+.+.|
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~G 156 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELG 156 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHC
Confidence 234778888999987 555554221 2223345679998875522 333 44577899
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc--CCH----HHHHHHHHcCcceeeeccccccCcc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI--VDA----RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI--~~~----~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|+|.+... ..+..+.++.+.. ++||+++||| .|. +++..++.+||+||.+|+.++..++
T Consensus 157 aD~Ik~~~~----------~~~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 157 ADIVKTKYT----------GDAESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CCEEEecCC----------CCHHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence 999988321 1245667777665 6999999998 344 4488999999999999999997654
No 165
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.58 E-value=5.9e-06 Score=76.03 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=114.2
Q ss_pred CCcHHHHHHHHhCC---Cceeec-C-C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE
Q 020013 22 ISGPELVAAVANAG---GLGLLR-A-P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~-~-~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~ 93 (332)
+.+.+++.++-++. .-++|- . . .+...+.+...+....+....|+.+++=-- .+.+.++.+++.|++.|++
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~-~~~e~i~~Al~~G~tsVm~ 103 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHG-MTFEKIKEALEIGFTSVMF 103 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCEEEE
Confidence 55666666665542 233331 1 0 123344455555554444567877775322 2367788899999999998
Q ss_pred ccCCCc-HH-------HHHHHHhCCCEEE-----------------EecCCHHHHHHHHH-cCCCEEEE-ecCCCCcccC
Q 020013 94 SWGEYS-EE-------LVLEAHSAGVKVV-----------------PQVGSFDEARKAVN-AGVDAIIV-QGREAGGHVI 146 (332)
Q Consensus 94 ~~g~~~-~~-------~i~~~~~~g~~v~-----------------~~v~s~~~a~~a~~-~g~D~ivv-~G~eaGGh~~ 146 (332)
-....+ .+ +.+.+++.|+.+- ..++++++++.+.+ .|+|++-+ .|+--|....
T Consensus 104 d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~ 183 (281)
T PRK06806 104 DGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNG 183 (281)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCC
Confidence 632222 22 3344455555432 22578999999874 59999987 3443332221
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeec--CcCCHHHHHHHHHcCcceeeecccccc
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+.-.+..++++.+.+ ++|+++-| || +.+++.+++..|+++|-+.|.+..
T Consensus 184 ~~~l~~~~L~~i~~~~---~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 184 DPNLRFDRLQEINDVV---HIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFN 235 (281)
T ss_pred CCccCHHHHHHHHHhc---CCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHH
Confidence 2234588899999887 79999999 99 899999999999999999999886
No 166
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.57 E-value=3.2e-06 Score=75.94 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=105.8
Q ss_pred cH-HHHHHHHhCCCceeecCCC---C-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-
Q 020013 24 GP-ELVAAVANAGGLGLLRAPD---W-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE- 97 (332)
Q Consensus 24 ~~-~la~avs~aGglG~i~~~~---~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~- 97 (332)
+| ++|..-.+..|.--+.... . ..-+.-.+.++++.+.++.|+-++=-+. ..+.++.+++.|++-|.++...
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIr--s~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIR--TKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcC--CHHHHHHHHHCCCCEEEECchHh
Confidence 55 6777666634433332111 0 0111223456666555566665532222 2567888899999998875211
Q ss_pred CcHHHHHHHHh-CCCEEEEecC-----------------C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHH
Q 020013 98 YSEELVLEAHS-AGVKVVPQVG-----------------S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMV 158 (332)
Q Consensus 98 ~~~~~i~~~~~-~g~~v~~~v~-----------------s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i 158 (332)
..+++++.+.+ .+-+++..+. + .+-++...+.|+..+++.....-|...| ..+.++.++
T Consensus 110 ~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G--~~~~li~~l 187 (234)
T PRK13587 110 QDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSG--PNFELTGQL 187 (234)
T ss_pred cCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCc--cCHHHHHHH
Confidence 23345555433 2323322111 1 3445667788999999866554454322 347788888
Q ss_pred HHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 159 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 159 ~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.+.. ++||+++|||++.+++.+++.+|+++|.+||++.-
T Consensus 188 ~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 188 VKAT---TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 7765 79999999999999999999999999999999763
No 167
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.56 E-value=3e-06 Score=73.31 Aligned_cols=171 Identities=23% Similarity=0.369 Sum_probs=105.6
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 12 GIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
-||.|=+. -+.+.+.++.+| ||.-++-.. .+|+ +++.+++.++.|+.|.-+- .+.+-.+.++|+
T Consensus 16 KVIsGLnN---Fd~~~V~~i~~AA~~ggAt~vDIA--adp~----LV~~~~~~s~lPICVSaVe----p~~f~~aV~AGA 82 (242)
T PF04481_consen 16 KVISGLNN---FDAESVAAIVKAAEIGGATFVDIA--ADPE----LVKLAKSLSNLPICVSAVE----PELFVAAVKAGA 82 (242)
T ss_pred hheeCccc---cCHHHHHHHHHHHHccCCceEEec--CCHH----HHHHHHHhCCCCeEeecCC----HHHHHHHHHhCC
Confidence 45544332 245555555554 676666542 3554 4677788889999997553 455667888999
Q ss_pred cEEEEc-cCCC--------cHHHH---HHHHh--CCCEEEEecC---C----HHHHHHHHHcCCCEEEEecCCCCc--cc
Q 020013 89 AVLQVS-WGEY--------SEELV---LEAHS--AGVKVVPQVG---S----FDEARKAVNAGVDAIIVQGREAGG--HV 145 (332)
Q Consensus 89 ~~I~~~-~g~~--------~~~~i---~~~~~--~g~~v~~~v~---s----~~~a~~a~~~g~D~ivv~G~eaGG--h~ 145 (332)
|.|.++ |..+ .+++. ++.|+ ..+.+-.++. . ++-|...++.|+|.|--+|...-- |.
T Consensus 83 dliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~ 162 (242)
T PF04481_consen 83 DLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSP 162 (242)
T ss_pred CEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCc
Confidence 999985 2111 12333 33343 2444444443 2 334666788999999765421100 10
Q ss_pred C--C----CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 146 I--G----QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 146 ~--~----~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
+ | ..+++.....+.+.+ ++||+.+.|| +.-.+.-++++||+||-+||+.=
T Consensus 163 g~lglIekaapTLAaay~ISr~v---~iPVlcASGl-S~vT~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 163 GILGLIEKAAPTLAAAYAISRAV---SIPVLCASGL-SAVTAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred chHHHHHHHhHHHHHHHHHHhcc---CCceEeccCc-chhhHHHHHHcCCcccchhHHhh
Confidence 0 0 012344444555555 8999999999 67999999999999999999864
No 168
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.54 E-value=9.4e-07 Score=78.41 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=75.5
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+-+.|..|++.++ ++--+++.++.||.+|---|.--|... |- .....++.+++.. ++||+..+||++++|+.
T Consensus 131 e~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~-Gl-~n~~~l~~i~e~~---~vpVivdAGIgt~sDa~ 205 (267)
T CHL00162 131 EFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQ-GL-QNLLNLQIIIENA---KIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCC-CC-CCHHHHHHHHHcC---CCcEEEeCCcCCHHHHH
Confidence 344567999999876 788999999999999987665444332 21 2345566677655 79999999999999999
Q ss_pred HHHHcCcceeeeccccccCcc
Q 020013 183 AALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~E 203 (332)
.++.+|||||.+.|++..++.
T Consensus 206 ~AmElGaDgVL~nSaIakA~d 226 (267)
T CHL00162 206 QAMELGASGVLLNTAVAQAKN 226 (267)
T ss_pred HHHHcCCCEEeecceeecCCC
Confidence 999999999999999995544
No 169
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.51 E-value=7.9e-06 Score=72.49 Aligned_cols=142 Identities=21% Similarity=0.345 Sum_probs=98.3
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-cCC-CcHHHHHHHHhCCCEEEEec-------------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-WGE-YSEELVLEAHSAGVKVVPQV------------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~-~g~-~~~~~i~~~~~~g~~v~~~v------------- 117 (332)
+.++++.+.++.|+-|+=-+. +.+.++.+++.|++.|.+. +.. .|..+.+.+++.|-+++..+
T Consensus 65 ~~i~~i~~~~~~~vQvGGGIR--s~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 65 EAIKEILEATDVPVQVGGGIR--SLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred HHHHHHHHhCCCCEEeeCCcC--CHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 445565555566665542222 3677888999999988774 222 24444445566665554322
Q ss_pred --C--C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-Ccce
Q 020013 118 --G--S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL-GAQG 191 (332)
Q Consensus 118 --~--s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~-GA~g 191 (332)
+ + .+.+++..+.|+..|++...+--|...| +.+.++.++.+.+ ++||+++|||++-+|+..+-.+ |..|
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G--~n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~G 217 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSG--PNVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEG 217 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCC--CCHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcE
Confidence 1 2 3456677889999999866543343322 3477888998888 8999999999999999999999 9999
Q ss_pred eeeccccccC
Q 020013 192 ICLGTRFVAS 201 (332)
Q Consensus 192 V~~GT~fl~t 201 (332)
|.+|+++..-
T Consensus 218 vIvG~ALy~g 227 (241)
T COG0106 218 VIVGRALYEG 227 (241)
T ss_pred EEEehHHhcC
Confidence 9999998744
No 170
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.51 E-value=4.9e-06 Score=78.41 Aligned_cols=121 Identities=22% Similarity=0.274 Sum_probs=83.2
Q ss_pred HHHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------C
Q 020013 80 IKAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------S 119 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s 119 (332)
.+.+.++|.|.|.+|.+. + ..++++.+++. ++++...++ +
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~ 226 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLT 226 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCC
Confidence 345667899999998642 1 12455666653 556766554 3
Q ss_pred HHH----HHHHHHcCCCEEEEecCCCCcccC-------CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-
Q 020013 120 FDE----ARKAVNAGVDAIIVQGREAGGHVI-------GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL- 187 (332)
Q Consensus 120 ~~~----a~~a~~~g~D~ivv~G~eaGGh~~-------~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~- 187 (332)
.++ ++.+.+.|+|+|.+.+........ .....+.++..+++.+ ++||++.|||.+++++.++++.
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t~~~a~~~l~~g 303 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRDPEVAEEILAEG 303 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHCC
Confidence 344 455678899999985532111000 0122356677777776 7999999999999999999998
Q ss_pred CcceeeeccccccCcc
Q 020013 188 GAQGICLGTRFVASEE 203 (332)
Q Consensus 188 GA~gV~~GT~fl~t~E 203 (332)
|||.|.+|+.|+..++
T Consensus 304 ~aD~V~igR~~ladP~ 319 (327)
T cd02803 304 KADLVALGRALLADPD 319 (327)
T ss_pred CCCeeeecHHHHhCcc
Confidence 7999999999998654
No 171
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.46 E-value=4.4e-07 Score=87.94 Aligned_cols=198 Identities=18% Similarity=0.206 Sum_probs=117.6
Q ss_pred hcCCccceecCCCCCCCCcH----HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC--------
Q 020013 6 MLGFEYGIVQAPLGPDISGP----ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA-------- 73 (332)
Q Consensus 6 ~l~~~~Pii~apM~~g~s~~----~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~-------- 73 (332)
.+.+..|+..+.|+.|.-+. .++.++...|+.---+.++ .+++.....-..+++.....|||+--..
T Consensus 162 ~~~i~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGG-e~~~~~~~~~s~I~QvaSGRFGV~~~yL~~a~~ieI 240 (485)
T COG0069 162 VLELKKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGG-EDPERYEDGRSAIKQVASGRFGVTPEYLANADAIEI 240 (485)
T ss_pred cceeeecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCC-CCHHHhccccceEEEeccccCccCHHHhCccceEEE
Confidence 36677899999999876543 4666666667544444443 5776653333334444455677642211
Q ss_pred ---C---C----------CHHHHHHHH--hcCCcEEEEc--cCCC----cHHHHHHHHhC--CCEEEEecC---CHHHHH
Q 020013 74 ---F---P----------HNENIKAIL--SEKVAVLQVS--WGEY----SEELVLEAHSA--GVKVVPQVG---SFDEAR 124 (332)
Q Consensus 74 ---~---~----------~~~~~~~~~--~~~~~~I~~~--~g~~----~~~~i~~~~~~--g~~v~~~v~---s~~~a~ 124 (332)
+ | ..+.+.... .-|.+.|+-. .... ...++..+|+. ..+|..++. .++...
T Consensus 241 KiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~ia 320 (485)
T COG0069 241 KIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIA 320 (485)
T ss_pred EeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHH
Confidence 1 0 012222221 1244555321 1111 12456666664 244554432 233333
Q ss_pred H-HHHcCCCEEEEecCCCCcccCCC--------CchhhhHHHHHHHhCC----CCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 125 K-AVNAGVDAIIVQGREAGGHVIGQ--------DGLISLLPMVVDLIGD----RDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 125 ~-a~~~g~D~ivv~G~eaGGh~~~~--------~~~~~ll~~i~~~~~~----~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
. +.++++|.|++.|.++|.-- .+ .+....++++.+.+.. .++-++++||+.|+.||+.+++||||.
T Consensus 321 agvakA~AD~I~IdG~~GGTGA-sP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~ 399 (485)
T COG0069 321 AGVAKAGADVITIDGADGGTGA-SPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADA 399 (485)
T ss_pred hhhhhccCCEEEEcCCCCcCCC-CcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcch
Confidence 3 67899999999999865421 11 1334445555554421 357899999999999999999999999
Q ss_pred eeeccccccCccCC
Q 020013 192 ICLGTRFVASEESY 205 (332)
Q Consensus 192 V~~GT~fl~t~Es~ 205 (332)
|-+||+.|.+--|-
T Consensus 400 v~~gTa~lia~GCi 413 (485)
T COG0069 400 VGFGTAALVALGCI 413 (485)
T ss_pred hhhchHHHHHhhhH
Confidence 99999999887763
No 172
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.45 E-value=2.8e-05 Score=67.73 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=122.0
Q ss_pred cceecCCCCCCCCcHHHHHHHH-hCC-CceeecCCC-CCCHHHHHHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhc
Q 020013 11 YGIVQAPLGPDISGPELVAAVA-NAG-GLGLLRAPD-WEAPDYLRDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSE 86 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs-~aG-glG~i~~~~-~~~~e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~ 86 (332)
.|++|=.+. ..+-+-|..+. +.+ ..-+|..+. +...+-+ +.++.+|+. .++++-..+-..+.-.-..+.+.++
T Consensus 3 ~p~LQvALD--~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~-~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 3 PPLLQVALD--LLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGM-RAVRALRELFPDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred CcceEeeec--ccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhH-HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHc
Confidence 477777775 33433333333 332 355555431 0011222 445666665 4555555554433323456788899
Q ss_pred CCcEEEEccCCCcHHH----HHHHHhCCCEEEEe---cCCHHHHHHHHH-cCCCEEEEe-cCCCCcccCCCCchhhhHHH
Q 020013 87 KVAVLQVSWGEYSEEL----VLEAHSAGVKVVPQ---VGSFDEARKAVN-AGVDAIIVQ-GREAGGHVIGQDGLISLLPM 157 (332)
Q Consensus 87 ~~~~I~~~~g~~~~~~----i~~~~~~g~~v~~~---v~s~~~a~~a~~-~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~ 157 (332)
|+|++.+. |.-+.+. ++..++.|..+... +.++++..+-++ .|+|+++++ |.++-- .|....+..+..
T Consensus 80 GAd~~tV~-g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~--~G~~~~~~~l~~ 156 (217)
T COG0269 80 GADWVTVL-GAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQA--AGKSWGEDDLEK 156 (217)
T ss_pred CCCEEEEE-ecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhh--cCCCccHHHHHH
Confidence 99999886 3334433 44556788887754 446777666665 999999993 443321 012233566777
Q ss_pred HHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc-CCCCHHHHHHHh
Q 020013 158 VVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE-SYAHPEYKRKLV 215 (332)
Q Consensus 158 i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E-s~~~~~~k~~~~ 215 (332)
+++..+. ..+|=.+||| +++++..+...|++-|++|+++..++. ......+++.+.
T Consensus 157 ik~~~~~-g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 157 IKKLSDL-GAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEID 213 (217)
T ss_pred HHHhhcc-CceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHh
Confidence 7665521 3789999999 899999999999999999999988876 334455565553
No 173
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.41 E-value=2e-05 Score=70.33 Aligned_cols=175 Identities=16% Similarity=0.189 Sum_probs=103.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
+=...+|=- ....+...++++.|.=.++..++. .+.+.+.+.++.+|+ ++.|+-. +.... + .+..++|
T Consensus 10 h~~liDP~k--~~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~-~~lPvil--fp~~~--~----~i~~~aD 78 (232)
T PRK04169 10 HVTLLDPDK--PLPDEALEAICESGTDAIIVGGSDGVTEENVDELVKAIKE-YDLPVIL--FPGNI--E----GISPGAD 78 (232)
T ss_pred EEEEECCCC--CCCHHHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc-CCCCEEE--eCCCc--c----ccCcCCC
Confidence 444556753 334445577888886566654433 567888899999998 7777654 22111 1 1123477
Q ss_pred EEEEc---cCCCcHHH-------HHHHHhCCCEEEE-------------e------c-CCHHHHHH-----HHHcCCCEE
Q 020013 90 VLQVS---WGEYSEEL-------VLEAHSAGVKVVP-------------Q------V-GSFDEARK-----AVNAGVDAI 134 (332)
Q Consensus 90 ~I~~~---~g~~~~~~-------i~~~~~~g~~v~~-------------~------v-~s~~~a~~-----a~~~g~D~i 134 (332)
.+.+. -+..+..+ +..++..+..+++ . + .+.++... ..-.|-..+
T Consensus 79 a~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~v 158 (232)
T PRK04169 79 AYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIV 158 (232)
T ss_pred EEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeE
Confidence 76542 12223221 2223333332221 0 0 12333222 123465555
Q ss_pred EEecCCCCcccCCCCchhhhHHHHHHHhCCCCC-cEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 135 IVQGREAGGHVIGQDGLISLLPMVVDLIGDRDI-PIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 135 vv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~i-PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.++. |+.. +......++.++++.. +. |++..|||.+.+++.+++..|||+|++||.|....+
T Consensus 159 Yle~---gs~~-g~~~~~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 159 YLEY---GGGA-GDPVPPEMVKAVKKAL---DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred EEEC---CCCC-CCCCCHHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 5542 2222 2224467788888876 66 999999999999999999999999999999985544
No 174
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.41 E-value=1.4e-05 Score=72.00 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=93.4
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEec-------------
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQV------------- 117 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~v------------- 117 (332)
.+.++++.+.+ .|+-++=-+. ..+.++.+++.|++-|.++- ....+++++.+.+.+-+++..+
T Consensus 63 ~~~i~~i~~~~-~~v~vGGGIr--s~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~ 139 (241)
T PRK14114 63 LPVLEKLSEFA-EHIQIGGGIR--SLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWL 139 (241)
T ss_pred HHHHHHHHhhc-CcEEEecCCC--CHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCe
Confidence 34455555443 3554432221 25678888899999887652 1123456666654432332211
Q ss_pred --C--C-HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc-----
Q 020013 118 --G--S-FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL----- 187 (332)
Q Consensus 118 --~--s-~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~----- 187 (332)
+ + .+-+..+.+.|+..|++..-+.-|...| ..+.++.++.+.. ++|||++|||++.+|+.++..+
T Consensus 140 ~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G--~d~el~~~l~~~~---~~pviasGGv~s~~Dl~~l~~~~~~~~ 214 (241)
T PRK14114 140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE--HDFSLTRKIAIEA---EVKVFAAGGISSENSLKTAQRVHRETN 214 (241)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCC--cCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHhcccccC
Confidence 1 2 3446778889999999865543333212 4478888888776 7999999999999999999987
Q ss_pred C-cceeeeccccccC
Q 020013 188 G-AQGICLGTRFVAS 201 (332)
Q Consensus 188 G-A~gV~~GT~fl~t 201 (332)
| ++||.+|++|..-
T Consensus 215 g~v~gvivg~Al~~g 229 (241)
T PRK14114 215 GLLKGVIVGRAFLEG 229 (241)
T ss_pred CcEEEEEEehHHHCC
Confidence 6 9999999997543
No 175
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.37 E-value=4.1e-06 Score=77.41 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=77.3
Q ss_pred HHHHHHHHhC---CCEEEEec-CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCc
Q 020013 100 EELVLEAHSA---GVKVVPQV-GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v-~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI 175 (332)
.+.++..+.. |..+++.| .++..++++.+.||-+|---+.--|+.. + ......+..+.+.. ++||+..+||
T Consensus 184 ~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~-g-v~~p~~i~~~~e~~---~vpVivdAGI 258 (326)
T PRK11840 184 VETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGL-G-IQNPYTIRLIVEGA---TVPVLVDAGV 258 (326)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCC-C-CCCHHHHHHHHHcC---CCcEEEeCCC
Confidence 4566666654 99996555 5899999999999933322122223222 2 23456677777764 7999999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccCccCC-CCHHHHHHHh
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVASEESY-AHPEYKRKLV 215 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t~Es~-~~~~~k~~~~ 215 (332)
++++|++.++.+|||||.+.|++..++.-. ....+|.++.
T Consensus 259 g~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 259 GTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred CCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998554421 1234454444
No 176
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.37 E-value=3.8e-05 Score=69.00 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=101.5
Q ss_pred CcH-HHHHHHHhCCCceeecCCCC---CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 23 SGP-ELVAAVANAGGLGLLRAPDW---EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 23 s~~-~la~avs~aGglG~i~~~~~---~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
.+| ++|..-.+.|. -.+....+ ...+.-...++++.+.+..|+-++--+. ..+.++.+++.|++-|.++....
T Consensus 35 ~dp~~~a~~~~~~g~-~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir--~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 35 SDPLDVARAYKELGF-RGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIR--SLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred CCHHHHHHHHHHCCC-CEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcC--CHHHHHHHHHcCCCeEEEcceec
Confidence 355 56676666653 22211111 1111223455666555555655443332 25678888889988777642211
Q ss_pred cHHHHHH-HHhCCC-EEEEec-------------CCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHh
Q 020013 99 SEELVLE-AHSAGV-KVVPQV-------------GSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 99 ~~~~i~~-~~~~g~-~v~~~v-------------~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
..++++. +++.+- +++..+ .++.+ ++...+. ++.+++..-..-|.. ....+.++.++.+..
T Consensus 112 ~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~--~g~~~~~~~~i~~~~ 188 (233)
T cd04723 112 PSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSG--QGPDLELLERLAARA 188 (233)
T ss_pred cchHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccC--CCcCHHHHHHHHHhc
Confidence 1133333 333332 333222 13444 4455666 998888655433322 123467788888766
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
++||+++|||++.+++.+++.+|+++|.+||++....
T Consensus 189 ---~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 189 ---DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred ---CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence 7999999999999999999999999999999987553
No 177
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.35 E-value=7.2e-06 Score=70.48 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHHhCCCceeecCCC-------------CCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 21 DISGPELVAAVANAGGLGLLRAPD-------------WEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~~~~-------------~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
-+.+++.+.-..++|.-.++...+ +.+|. .|+++++....|.-...-+-. --..+++...+
T Consensus 27 dVv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~----mIKei~~aVsiPVMAk~RiGH--FVEAQIlE~l~ 100 (296)
T KOG1606|consen 27 DVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPR----MIKEIKNAVSIPVMAKVRIGH--FVEAQILEALG 100 (296)
T ss_pred EecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHH----HHHHHHHhccchhhhhhhhhh--hhHHHHHHHhc
Confidence 367999998888899877776532 11232 345555444444322111100 01234455678
Q ss_pred CcEEEEccCCCcHHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccC----------C--------
Q 020013 88 VAVLQVSWGEYSEELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVI----------G-------- 147 (332)
Q Consensus 88 ~~~I~~~~g~~~~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~----------~-------- 147 (332)
+|+|.-+-=..|.++...+.+. .++.++.+.+.-||.+-...|+-.|-.+|--+.|... +
T Consensus 101 vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m 180 (296)
T KOG1606|consen 101 VDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNM 180 (296)
T ss_pred cCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 8988543111234455555554 4567788889999999999999999888764444210 0
Q ss_pred -C----------CchhhhHHHHHHHhCCCCCcE--EeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHH
Q 020013 148 -Q----------DGLISLLPMVVDLIGDRDIPI--IAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKL 214 (332)
Q Consensus 148 -~----------~~~~~ll~~i~~~~~~~~iPv--iaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~ 214 (332)
. ...+.|+.+..+.- ++|| +++|||.+|.|++-++.+|+|||.+||.++.+.. +.....+|
T Consensus 181 ~~dev~t~Ak~i~aP~dLv~~t~q~G---rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~d---P~k~a~ai 254 (296)
T KOG1606|consen 181 DDDEVFTFAKEIAAPYDLVKQTKQLG---RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGD---PVKRARAI 254 (296)
T ss_pred CHHHHHHHHHHhcCcHHHHHHHHHcC---CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCC---HHHHHHHH
Confidence 0 01244444444322 5776 5999999999999999999999999999887643 44444556
Q ss_pred hcC
Q 020013 215 VEM 217 (332)
Q Consensus 215 ~~~ 217 (332)
+++
T Consensus 255 VqA 257 (296)
T KOG1606|consen 255 VQA 257 (296)
T ss_pred HHH
Confidence 654
No 178
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.34 E-value=3e-05 Score=70.76 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=103.2
Q ss_pred CccceecCCCCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEe--ecCC---C----CHH
Q 020013 9 FEYGIVQAPLGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGV--VLAF---P----HNE 78 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl--~~~~---~----~~~ 78 (332)
+++-+..+|+. +..+++ ++..+.+.|.-+++..+++ ++... ... .++.++.+.+ -.+. + ...
T Consensus 23 iDh~~l~gp~~-~~~~~~~~~~~a~~~~~~~v~~~p~~-----~~~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 94 (258)
T TIGR01949 23 MDHGVSNGPIK-GLVDIRKTVNEVAEGGADAVLLHKGI-----VRRGH-RGY-GKDVGLIIHLSASTSLSPDPNDKRIVT 94 (258)
T ss_pred CCCccccCCCC-CcCCHHHHHHHHHhcCCCEEEeCcch-----hhhcc-ccc-CCCCcEEEEEcCCCCCCCCCCcceeee
Confidence 77888888987 677766 5555555565555544322 22111 111 1233333322 1111 1 113
Q ss_pred HHHHHHhcCCcEEEEc--cCCCc-HHHHH-------HHHhCCCEEEEecC---------C---HHH-HHHHHHcCCCEEE
Q 020013 79 NIKAILSEKVAVLQVS--WGEYS-EELVL-------EAHSAGVKVVPQVG---------S---FDE-ARKAVNAGVDAII 135 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~-~~~i~-------~~~~~g~~v~~~v~---------s---~~~-a~~a~~~g~D~iv 135 (332)
.++.+++.|++.|++- .+... .++++ .+++.|++++..+. + ..+ ++.+.+.|+|+|.
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyik 174 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVK 174 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEe
Confidence 4778889999988763 22211 22222 23456877665221 2 233 4566789999998
Q ss_pred EecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC--C----HHHHHHHHHcCcceeeeccccccCc
Q 020013 136 VQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV--D----ARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 136 v~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~--~----~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.. . .....+.++.+.. ++||+++|||. + .+++.+++.+||+|+.+|+.++..+
T Consensus 175 t~~---~-------~~~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 175 TPY---T-------GDIDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred ccC---C-------CCHHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 731 1 1255667776655 79999999996 3 6677888899999999999999664
No 179
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.31 E-value=6.5e-06 Score=73.74 Aligned_cols=142 Identities=22% Similarity=0.320 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHh-CCC-------------EEEE
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHS-AGV-------------KVVP 115 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~-~g~-------------~v~~ 115 (332)
-.+.++++.+.+..|+-++=-+. ..+.++.+++.|++-|.++--. ..+++++++.+ .|- ++..
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIr--s~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~ 138 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIR--SIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVAT 138 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE---SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEE
T ss_pred HHHHHHHHHhcCCccEEEeCccC--cHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEe
Confidence 34667777766666665543332 2567888999999988775110 11234444322 121 1211
Q ss_pred -------ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 116 -------QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 116 -------~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
...-.+.++++.+.|+..+++..-+.-|...| ..+.++.++++.. ++|||++|||++.+|+.++...|
T Consensus 139 ~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G--~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G 213 (229)
T PF00977_consen 139 NGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQG--PDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAG 213 (229)
T ss_dssp TTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS----HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTT
T ss_pred cCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCC--CCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCC
Confidence 11223456678889999999977655554323 3478888988888 79999999999999999999999
Q ss_pred cceeeeccccc
Q 020013 189 AQGICLGTRFV 199 (332)
Q Consensus 189 A~gV~~GT~fl 199 (332)
++||.+|++|.
T Consensus 214 ~~gvivg~al~ 224 (229)
T PF00977_consen 214 IDGVIVGSALH 224 (229)
T ss_dssp ECEEEESHHHH
T ss_pred CcEEEEehHhh
Confidence 99999999985
No 180
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.31 E-value=7.2e-05 Score=65.57 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=95.6
Q ss_pred HHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---CCCcHHH
Q 020013 27 LVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---GEYSEEL 102 (332)
Q Consensus 27 la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---g~~~~~~ 102 (332)
++..+.++|.=.++-.++. .+.+.+.+.++.+|+.++.|+-+ +.... . .+..++|.+.+.. +..+..+
T Consensus 16 ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil--fp~~~--~----~i~~~aD~~~~~sllns~~~~~i 87 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL--FPGNV--N----GLSRYADAVFFMSLLNSADTYFI 87 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE--ECCCc--c----ccCcCCCEEEEEEeecCCCcchh
Confidence 4557778876566644332 47888999999999988888765 22111 1 1223577765431 2223221
Q ss_pred H----HH---HHhCCCEEEE-------------ec--------CCHHHHH----HHHHcCCCEEEEecCCCCcccCCCCc
Q 020013 103 V----LE---AHSAGVKVVP-------------QV--------GSFDEAR----KAVNAGVDAIIVQGREAGGHVIGQDG 150 (332)
Q Consensus 103 i----~~---~~~~g~~v~~-------------~v--------~s~~~a~----~a~~~g~D~ivv~G~eaGGh~~~~~~ 150 (332)
+ +. +++.|..+++ .+ .+++++. .+...|.+.|-++...+-+. ..
T Consensus 88 ~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~----~v 163 (205)
T TIGR01769 88 VGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASY----PV 163 (205)
T ss_pred hhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCC----CC
Confidence 1 11 2443433221 11 1344443 35567999888854211111 23
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
...++.++++.. ++|++..|||++++++.+++..|||+|++|
T Consensus 164 ~~e~i~~Vk~~~---~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 164 NPETISLVKKAS---GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CHHHHHHHHHhh---CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 367788888877 799999999999999999999999999987
No 181
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.26 E-value=1e-05 Score=74.09 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=68.1
Q ss_pred HHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
-++.+++. +.++...|.|.++++++.+.|+|+|.+.+. . ...+.++++..+. ++|+.++||| +.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~-~e~l~~~~~~~~~-~ipi~AiGGI-~~ 237 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------S-PEELREAVALLKG-RVLLEASGGI-TL 237 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------C-HHHHHHHHHHcCC-CCcEEEECCC-CH
Confidence 34455543 567889999999999999999999998432 1 3456666655432 5899999999 89
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.++.+.|+|++.+|+.....
T Consensus 238 ~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 238 ENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred HHHHHHHHcCCCEEEEEeeecCC
Confidence 99999999999999999976533
No 182
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.23 E-value=8.2e-05 Score=68.22 Aligned_cols=174 Identities=21% Similarity=0.293 Sum_probs=100.9
Q ss_pred CccceecCCCCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEee----c-CCCC----HH
Q 020013 9 FEYGIVQAPLGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVV----L-AFPH----NE 78 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~----~-~~~~----~~ 78 (332)
+++-+..+|+. +..+++ ++..+...|.-+++.. |..++...+.+ ..+.++.+.+- + +.+. ..
T Consensus 26 ~Dh~~l~gp~~-~~~d~~~~~~~a~~~~~~av~v~-----~~~~~~~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~ 97 (267)
T PRK07226 26 MDHGVSHGPID-GLVDIRDTVNKVAEGGADAVLMH-----KGLARHGHRGY--GRDVGLIVHLSASTSLSPDPNDKVLVG 97 (267)
T ss_pred CCCccccCCCc-CcCCHHHHHHHHHhcCCCEEEeC-----HhHHhhhcccc--CCCCcEEEEEcCCCCCCCCCCcceeee
Confidence 67788888887 577765 4444444454444433 32222211112 11233333211 1 1111 23
Q ss_pred HHHHHHhcCCcEEEEc--cCCCc-H-------HHHHHHHhCCCEEEEe-------c---CCHHH----HHHHHHcCCCEE
Q 020013 79 NIKAILSEKVAVLQVS--WGEYS-E-------ELVLEAHSAGVKVVPQ-------V---GSFDE----ARKAVNAGVDAI 134 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~-~-------~~i~~~~~~g~~v~~~-------v---~s~~~----a~~a~~~g~D~i 134 (332)
.++.+++.|++.|.+- .|... . ++.+.+++.|++++.. + .+.++ ++.+.+.|+|+|
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIV 177 (267)
T ss_pred cHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEE
Confidence 4677889999988764 34321 1 2223345578877654 1 13333 456778999999
Q ss_pred EEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC--CHHHHH----HHHHcCcceeeeccccccCcc
Q 020013 135 IVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV--DARGYV----AALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 135 vv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~--~~~~v~----~al~~GA~gV~~GT~fl~t~E 203 (332)
... + .| ...++.++.+.. ++||+++|||. |.+++. +++.+||+|+.+|+.++..+.
T Consensus 178 Kt~-~--~~-------~~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 178 KTN-Y--TG-------DPESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred eeC-C--CC-------CHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 774 1 11 245667776654 69999999997 555544 446999999999999986543
No 183
>KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=98.23 E-value=6.5e-06 Score=68.93 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=82.0
Q ss_pred CcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCCHHHHHHHHHc--CCCEEEEecCCC
Q 020013 64 RPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNA--GVDAIIVQGREA 141 (332)
Q Consensus 64 ~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~--g~D~ivv~G~ea 141 (332)
.+.-|++|.++|.+..+..+.+.+.|+|++| |..+.+.+.++-..-++|++.-.+ +..+ ++.. --|.+ +.+.|+
T Consensus 92 ~~~lVGVF~nqp~e~il~~~~~~~ldiVQLH-G~es~~~~~~L~rpvikvfpln~n-~~~~-~~~~vP~~d~~-lvdset 167 (227)
T KOG4202|consen 92 AKKLVGVFVNQPEETILRAADSSDLDIVQLH-GNESRAAFSRLVRPVIKVFPLNAN-EDGK-LLNEVPEEDWI-LVDSET 167 (227)
T ss_pred chheEEEeecCCHHHHHHHHhhcCCceEEec-CcccHHHHHHhCCceEEEEecCch-hhhH-hhccCCchhhe-eecccc
Confidence 4556889999998778888888999999999 667777777765545555543222 2222 3322 23444 446677
Q ss_pred CcccCCCCchhhhHH--HHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 142 GGHVIGQDGLISLLP--MVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 142 GGh~~~~~~~~~ll~--~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
||.. ....|..+. .++. .-|++.|||+ +|+|+.+||. ++.+||-+.+..-
T Consensus 168 GG~G--~~~dW~~~s~~~vr~-----~~~~~LAGGl-tP~NV~dAlsi~~p~gvDVSsGve 220 (227)
T KOG4202|consen 168 GGSG--KGFDWAQFSLPSVRS-----RNGWLLAGGL-TPTNVSDALSILQPDGVDVSSGVE 220 (227)
T ss_pred CcCc--CccCHHHhcCccccc-----cCceEEecCC-CccchHHhhhhcCCceeeccCcee
Confidence 7752 222333221 1221 4579999999 9999999998 6889998877643
No 184
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.20 E-value=1.1e-05 Score=74.43 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=68.5
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGG 174 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGG 174 (332)
.+.++.+++. ..+|...+.|.+++.++.+.|+|+|.+.+. + ...+.++.+.++ ..++|+.++||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~-------~----~e~l~~av~~~~~~~~~i~leAsGG 251 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM-------P----VDLMQQAVQLIRQQNPRVKIEASGN 251 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3455556653 467889999999999999999999999533 2 223334333221 12689999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
| |.+++.++.+.|+|++.+|+.+..++
T Consensus 252 I-t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 252 I-TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred C-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 9 89999999999999999999766443
No 185
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.20 E-value=7.7e-05 Score=67.39 Aligned_cols=142 Identities=17% Similarity=0.070 Sum_probs=89.3
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC-CCcHHHHHHH-HhCCCEEEE--ec-----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-EYSEELVLEA-HSAGVKVVP--QV----------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~-~~~g~~v~~--~v----------- 117 (332)
+.++++.+.+..|+-++=-+. ..+.++.+++.|++-|.++-- ...+++++.+ +..+-+++. .+
T Consensus 64 ~~i~~i~~~~~~~v~vgGGIr--s~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 64 MMLEEVVKLLVVVEELSGGRR--DDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred HHHHHHHHHCCCCEEEcCCCC--CHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 355665555455654432221 256777888889998876411 1223444443 222211111 00
Q ss_pred -----C--CH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH---H
Q 020013 118 -----G--SF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL---S 186 (332)
Q Consensus 118 -----~--s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al---~ 186 (332)
+ ++ +.+++..+.|+..|++...+.-|...| ..+.++.++.+.. ++|||++|||++.+|+.++- .
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G--~d~~l~~~l~~~~---~~pviasGGv~s~eDl~~l~~l~~ 216 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGG--PNELLLEVVAART---DAIVAASGGSSLLDDLRAIKYLDE 216 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCC--cCHHHHHHHHhhC---CCCEEEECCcCCHHHHHHHHhhcc
Confidence 1 22 445667788999999976554443322 3477888888775 79999999999999998864 4
Q ss_pred cCcceeeeccccccC
Q 020013 187 LGAQGICLGTRFVAS 201 (332)
Q Consensus 187 ~GA~gV~~GT~fl~t 201 (332)
.|++||.+|++|.--
T Consensus 217 ~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 217 GGVSVAIGGKLLYAR 231 (243)
T ss_pred CCeeEEEEhHHHHcC
Confidence 599999999997543
No 186
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.18 E-value=1.7e-05 Score=72.53 Aligned_cols=85 Identities=26% Similarity=0.315 Sum_probs=65.1
Q ss_pred HHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 102 LVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 102 ~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
-++.+++. +.++...+.|.++++++.+.|+|+|.+.+. + ...++++.+.++. .+|++++||| +.
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~-------~----~e~lk~~v~~~~~-~ipi~AsGGI-~~ 233 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM-------K----PEEIKEAVQLLKG-RVLLEASGGI-TL 233 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhcC-CCcEEEECCC-CH
Confidence 34455542 577889999999999999999999988332 1 2345555554422 4899999999 89
Q ss_pred HHHHHHHHcCcceeeeccccc
Q 020013 179 RGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl 199 (332)
+|+.++.+.|+|++.+|.-+-
T Consensus 234 ~ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 234 DNLEEYAETGVDVISSGALTH 254 (265)
T ss_pred HHHHHHHHcCCCEEEeCHHHc
Confidence 999999999999999965443
No 187
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.18 E-value=7.4e-06 Score=74.56 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+.++...+.|+|.+.+....+.+.. ....+.++.++++.+ ++||++.|||.+.+++.+++.+||++|++||.++.
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~--~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEG--RTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCccccc--ChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 5566777889999999776655432 224578888888877 79999999999999999999999999999999997
Q ss_pred Ccc
Q 020013 201 SEE 203 (332)
Q Consensus 201 t~E 203 (332)
.++
T Consensus 109 ~p~ 111 (254)
T TIGR00735 109 NPE 111 (254)
T ss_pred ChH
Confidence 643
No 188
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.18 E-value=9.4e-06 Score=74.40 Aligned_cols=89 Identities=27% Similarity=0.334 Sum_probs=66.4
Q ss_pred HHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcC
Q 020013 101 ELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~ 176 (332)
.-++.+++. +.++...+.|.+++..+.+.|+|+|.+.+. .+ ..++++.+.++. .++|+.++|||
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~-------~~----e~l~~~v~~i~~~~~i~i~asGGI- 236 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM-------SP----EELKEAVKLLKGLPRVLLEASGGI- 236 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC-------CH----HHHHHHHHHhccCCCeEEEEECCC-
Confidence 345666653 467889999999999999999999999433 11 223333333211 26899999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccC
Q 020013 177 DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.+++.++.+.|+|++.+|+.+-..
T Consensus 237 t~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 237 TLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred CHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 9999999999999999998765544
No 189
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.18 E-value=0.00017 Score=63.89 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=98.0
Q ss_pred cHHHHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---CCCc
Q 020013 24 GPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---GEYS 99 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---g~~~ 99 (332)
..+.+.++++.|.=.++..++. .+.+.+.+.++.+|+.+ .|+-+ +...+ . .+..++|++.+.. +..|
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~-lPvil--fp~~~--~----~i~~~aDa~l~~svlNs~~~ 86 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYG-LPIIL--FPSNP--T----NVSRDADALFFPSVLNSDDP 86 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccC-CCEEE--eCCCc--c----ccCcCCCEEEEEEeecCCCc
Confidence 5578888989887666654433 57788888999998754 77554 22211 1 1223577765431 2223
Q ss_pred HHH-------HHHHHhCCCEEEE-------------ec-------CCHHHHHH----HHH-cCCCEEEEecCCCCcccCC
Q 020013 100 EEL-------VLEAHSAGVKVVP-------------QV-------GSFDEARK----AVN-AGVDAIIVQGREAGGHVIG 147 (332)
Q Consensus 100 ~~~-------i~~~~~~g~~v~~-------------~v-------~s~~~a~~----a~~-~g~D~ivv~G~eaGGh~~~ 147 (332)
..+ +..+++.+..+++ .+ .+.++... |.+ .|-..|-++ +||.. +
T Consensus 87 ~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE---~gs~~-g 162 (223)
T TIGR01768 87 YWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLE---AGSGA-P 162 (223)
T ss_pred hHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEE---ecCCC-C
Confidence 221 2222322222221 01 12222221 122 477777775 23322 2
Q ss_pred CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 148 QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 148 ~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.......+..+++.+. ++|++..|||.+.+++.+++.+|||+|++||.+...
T Consensus 163 ~~v~~e~i~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 163 EPVPPELVAEVKKVLD--KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred CCcCHHHHHHHHHHcC--CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 2233567777777653 699999999999999999999999999999998754
No 190
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.18 E-value=1.4e-05 Score=69.84 Aligned_cols=96 Identities=24% Similarity=0.353 Sum_probs=75.0
Q ss_pred HHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.+-+.|..|++.++ ++-.+++.++.||-+|.--|.--|... |. .....+.-+.+.. ++|||..-||+++.++.
T Consensus 124 e~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~-G~-~n~~~l~iiie~a---~VPviVDAGiG~pSdAa 198 (262)
T COG2022 124 EQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGL-GL-QNPYNLEIIIEEA---DVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCc-Cc-CCHHHHHHHHHhC---CCCEEEeCCCCChhHHH
Confidence 345567999999887 678899999999998876544333322 22 2244566677766 89999999999999999
Q ss_pred HHHHcCcceeeeccccccCccC
Q 020013 183 AALSLGAQGICLGTRFVASEES 204 (332)
Q Consensus 183 ~al~~GA~gV~~GT~fl~t~Es 204 (332)
.++.+|+|+|.+-|++..++.-
T Consensus 199 ~aMElG~DaVL~NTAiA~A~DP 220 (262)
T COG2022 199 QAMELGADAVLLNTAIARAKDP 220 (262)
T ss_pred HHHhcccceeehhhHhhccCCh
Confidence 9999999999999998877653
No 191
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.16 E-value=8.7e-06 Score=73.52 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.|++......|.. ....+.++.++++.+ ++||++.|||.+.+++.+++..||++|++||.++
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 45567777889999998777655432 224578888888877 7999999999999999999999999999999998
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 105 ~~p 107 (243)
T cd04731 105 ENP 107 (243)
T ss_pred hCh
Confidence 653
No 192
>PRK06801 hypothetical protein; Provisional
Probab=98.16 E-value=0.00021 Score=65.93 Aligned_cols=175 Identities=19% Similarity=0.250 Sum_probs=114.6
Q ss_pred CCCcHHHHHHHHhCC---CceeecC-----CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA-----PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~-----~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-+|- ..++|-. ..|...+.+...+..+.+....|+.+++=-- .+.+.++.+++.|.+.|.
T Consensus 24 n~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~-~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 24 NVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHG-LHFEAVVRALRLGFSSVM 102 (286)
T ss_pred eeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHhCCcEEE
Confidence 356677776666552 2333311 1234556666666666666677888775322 235778889999999999
Q ss_pred EccCCCc-HH-------HHHHHHhCCCEEEE--------------------ecCCHHHHHHHH-HcCCCEEEEecC-CCC
Q 020013 93 VSWGEYS-EE-------LVLEAHSAGVKVVP--------------------QVGSFDEARKAV-NAGVDAIIVQGR-EAG 142 (332)
Q Consensus 93 ~~~g~~~-~~-------~i~~~~~~g~~v~~--------------------~v~s~~~a~~a~-~~g~D~ivv~G~-eaG 142 (332)
+.....| ++ +++.++..|+.|-. .-++++++++.. +.|+|++-+ .. ..-
T Consensus 103 ~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~H 181 (286)
T PRK06801 103 FDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-AIGNAH 181 (286)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-ccCCCC
Confidence 8633333 22 33445556655411 123568888877 789999988 22 111
Q ss_pred cccCC-CCchhhhHHHHHHHhCCCCCcEEeecC--cCCHHHHHHHHHcCcceeeeccccccC
Q 020013 143 GHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 143 Gh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGG--I~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|...+ +...+.++.++.+.+ ++|+++.|| | +.+++.+++.+|++.|-++|.+...
T Consensus 182 g~y~~~~~l~~e~l~~i~~~~---~~PLVlHGGSgi-~~e~~~~~i~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 182 GKYKGEPKLDFARLAAIHQQT---GLPLVLHGGSGI-SDADFRRAIELGIHKINFYTGMSQA 239 (286)
T ss_pred CCCCCCCCCCHHHHHHHHHhc---CCCEEEECCCCC-CHHHHHHHHHcCCcEEEehhHHHHH
Confidence 11111 224588899998877 799999999 9 6799999999999999999997654
No 193
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.15 E-value=1.4e-05 Score=73.10 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=70.2
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGG 174 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGG 174 (332)
.+.++.+++. ..++...+.|.++++.+.++|+|+|.++++ .+..+.++++..+. .++.+.++||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~-----------~~e~l~~~v~~~~~~~~~~~ieAsGg 237 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM-----------SVEEIKEVVAYRNANYPHVLLEASGN 237 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC-----------CHHHHHHHHHHhhccCCCeEEEEECC
Confidence 4556666663 367889999999999999999999988654 23445555544321 2567999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
| |++++.++..+|+|.+.+|+.+-..+
T Consensus 238 I-t~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 238 I-TLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 9 99999999999999999999765443
No 194
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.11 E-value=2.6e-05 Score=71.61 Aligned_cols=86 Identities=26% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+-++.+|+. ..++...++|.++++++.+.|+|+|.++. .....+.++++... .++|+.+.||| +
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~-----------~~~e~l~~~~~~~~-~~i~i~AiGGI-t 242 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN-----------RTPDEIREFVKLVP-SAIVTEASGGI-T 242 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC-----------CCHHHHHHHHHhcC-CCceEEEECCC-C
Confidence 334444443 46788999999999999999999998832 11345666666542 14788899999 9
Q ss_pred HHHHHHHHHcCcceeeeccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+|+.++.+.|+|++.+|.-.-
T Consensus 243 ~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 243 LENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHHcCCCEEEEChhhc
Confidence 9999999999999999998644
No 195
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.10 E-value=0.00036 Score=64.71 Aligned_cols=175 Identities=18% Similarity=0.237 Sum_probs=112.7
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C-C---CCCC-HHHHHHHHHHHHhhc--CCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A-P---DWEA-PDYLRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~-~---~~~~-~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
.+.+.+.+.++-++- ..++|- . . .|.. .+.+...+..+.+.. ..|+.+++=- .+.+.+..+++.|.+
T Consensus 24 N~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH--~~~~~i~~ai~~Gft 101 (293)
T PRK07315 24 NTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDH--GHYEDALECIEVGYT 101 (293)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCC--CCHHHHHHHHHcCCC
Confidence 356777777666552 233331 1 1 1222 344555555554444 4587777532 235678888999999
Q ss_pred EEEEccCCCc-HH-------HHHHHHhCCCEEE---------------Eec-CCHHHHHHHHHcCCCEEEEe-cCCCCcc
Q 020013 90 VLQVSWGEYS-EE-------LVLEAHSAGVKVV---------------PQV-GSFDEARKAVNAGVDAIIVQ-GREAGGH 144 (332)
Q Consensus 90 ~I~~~~g~~~-~~-------~i~~~~~~g~~v~---------------~~v-~s~~~a~~a~~~g~D~ivv~-G~eaGGh 144 (332)
.|.+.....| ++ +++.++..|+.+- ... +++++|+.+.+.|+|++-+- |+-=|-.
T Consensus 102 SVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y 181 (293)
T PRK07315 102 SIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPY 181 (293)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccC
Confidence 9998633322 22 2333444454431 123 78999999999999999772 2211111
Q ss_pred cC-CCCchhhhHHHHHHHhCCCCCcEEeecC--cCCHHHHHHHHHcCcceeeecccccc
Q 020013 145 VI-GQDGLISLLPMVVDLIGDRDIPIIAAGG--IVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 145 ~~-~~~~~~~ll~~i~~~~~~~~iPviaaGG--I~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.. .+.-.+.+++++.+.+. ++|+++-|| | +.+++.+++..|+++|-++|.+..
T Consensus 182 ~t~~k~l~~e~L~~i~~~~~--~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 182 PENWEGLDLDHLEKLTEAVP--GFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred CCCCCcCCHHHHHHHHHhcc--CCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH
Confidence 11 12234888999988872 499999999 9 789999999999999999999885
No 196
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.10 E-value=3e-05 Score=71.14 Aligned_cols=85 Identities=27% Similarity=0.349 Sum_probs=65.6
Q ss_pred HHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 103 VLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 103 i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+++. +.++...+.|.+++.++.+.|+|+|.+.+. ....++++++..+. ++|+.++||| +.++
T Consensus 180 v~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~-----------~~e~l~~~v~~~~~-~i~leAsGGI-t~~n 246 (277)
T PRK05742 180 VAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDEL-----------SLDDMREAVRLTAG-RAKLEASGGI-NEST 246 (277)
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC-----------CHHHHHHHHHHhCC-CCcEEEECCC-CHHH
Confidence 4444443 467889999999999999999999987322 13345555554422 6899999999 8999
Q ss_pred HHHHHHcCcceeeecccccc
Q 020013 181 YVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~ 200 (332)
+.++.+.|+|++.+|+....
T Consensus 247 i~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHcCCCEEEEChhhcC
Confidence 99999999999999986443
No 197
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.08 E-value=5.6e-06 Score=89.43 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHhC--CCEEEEecCC---HHH-HHHHHHcCCCEEEEecCCCCcccCCC--------CchhhhHHHHHHHhCC--
Q 020013 101 ELVLEAHSA--GVKVVPQVGS---FDE-ARKAVNAGVDAIIVQGREAGGHVIGQ--------DGLISLLPMVVDLIGD-- 164 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s---~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~--------~~~~~ll~~i~~~~~~-- 164 (332)
+++..+|+. +.+|..++.+ +.. +.-+.++|+|+|++.|.++|... .+ .+...-|+++.+.+..
T Consensus 985 qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGA-ap~~~~~~~GlP~e~gL~~~~~~L~~~g 1063 (1485)
T PRK11750 985 QLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGA-SPLTSVKYAGSPWELGLAETHQALVANG 1063 (1485)
T ss_pred HHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCccc-ccHHHHhhCCccHHHHHHHHHHHHHhcC
Confidence 345566654 4566554331 222 22356789999999999866432 22 1112225455444321
Q ss_pred --CCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCC
Q 020013 165 --RDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESY 205 (332)
Q Consensus 165 --~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~ 205 (332)
.++.++++||+.++.|++.++++|||.|.+||++|.+-.|.
T Consensus 1064 lR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi 1106 (1485)
T PRK11750 1064 LRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCK 1106 (1485)
T ss_pred CCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCH
Confidence 36999999999999999999999999999999999998884
No 198
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.06 E-value=0.00027 Score=60.58 Aligned_cols=184 Identities=20% Similarity=0.290 Sum_probs=110.6
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-CC---------------------CHHHHHHHHHHHHhh-cCCcEE
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-WE---------------------APDYLRDLIRKTRSL-TERPFG 67 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~~---------------------~~e~~~~~i~~~r~~-~~~p~g 67 (332)
.|.|.++.. .+++-.-+...-..||.++|..+- |. +.+.+.+.++++|.. ...|+.
T Consensus 21 vtfiTaG~P-~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIi 99 (268)
T KOG4175|consen 21 VTFITAGDP-DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPII 99 (268)
T ss_pred EEEEecCCC-cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCccccee
Confidence 466766663 455544444555678888875421 11 122233344444432 234443
Q ss_pred E----EeecCCCCHHHHHHHHhcCCcEEEEccCCCcHH---HHHHHHhCCCEEEEecC--CHHHHHHHHHcCCCEEEE--
Q 020013 68 V----GVVLAFPHNENIKAILSEKVAVLQVSWGEYSEE---LVLEAHSAGVKVVPQVG--SFDEARKAVNAGVDAIIV-- 136 (332)
Q Consensus 68 v----nl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~---~i~~~~~~g~~v~~~v~--s~~~a~~a~~~g~D~ivv-- 136 (332)
. |-++....+.++..+.++|+..+.+. ..||++ +-+.+++.|+.+++-+. +.++-..++..-+|.++.
T Consensus 100 LmgYYNPIl~yG~e~~iq~ak~aGanGfiiv-DlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvV 178 (268)
T KOG4175|consen 100 LMGYYNPILRYGVENYIQVAKNAGANGFIIV-DLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVV 178 (268)
T ss_pred eeecccHHHhhhHHHHHHHHHhcCCCceEec-cCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEE
Confidence 2 22222234678899999999987765 445543 33556788998876553 555555555555665543
Q ss_pred ecCCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 137 QGREAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 137 ~G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.-....|.... ....-+|+++++++.+ +.|+-..-||++++++...-.. ||||++||.++
T Consensus 179 SrmG~TG~~~svn~~l~~L~qrvrk~t~--dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 179 SRMGVTGTRESVNEKLQSLLQRVRKATG--DTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred EeccccccHHHHHHHHHHHHHHHHHhcC--CCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 22222222100 1234567778887764 7899999999999999988777 99999999854
No 199
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.05 E-value=0.00018 Score=64.41 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh-CCCEEEEec--------------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS-AGVKVVPQV-------------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~-~g~~v~~~v-------------- 117 (332)
+.++++.+.++.|+-++=-+. ..+.++.+.+.|++.+.++--...+++++.+.+ .|- ++..+
T Consensus 63 ~~i~~i~~~~~~pv~~gGGIr--s~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~-ivvslD~~~g~v~~~gw~~ 139 (228)
T PRK04128 63 DVVKNIIRETGLKVQVGGGLR--TYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEG-ITVSLDVKGGRIAVKGWLE 139 (228)
T ss_pred HHHHHHHhhCCCCEEEcCCCC--CHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCC-EEEEEEccCCeEecCCCeE
Confidence 345555554556655432222 246677778889987776421123445555432 222 22111
Q ss_pred ---CCHHHH-HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 118 ---GSFDEA-RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 118 ---~s~~~a-~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
.++.+. +.+.+. +..+++..-+.-|...|.. .+.+... ++|||++|||++.+|+.++..+|++||.
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d-------~l~~~~~--~~pviasGGv~~~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 140 ESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE-------EIERFWG--DEEFIYAGGVSSAEDVKKLAEIGFSGVI 209 (228)
T ss_pred cCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH-------HHHHhcC--CCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 133343 344444 7888886654333321221 3333322 6999999999999999999999999999
Q ss_pred eccccccC
Q 020013 194 LGTRFVAS 201 (332)
Q Consensus 194 ~GT~fl~t 201 (332)
+|++|..-
T Consensus 210 vg~al~~g 217 (228)
T PRK04128 210 IGKALYEG 217 (228)
T ss_pred EEhhhhcC
Confidence 99998654
No 200
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.04 E-value=3.3e-05 Score=70.90 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=61.9
Q ss_pred HHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH
Q 020013 101 ELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA 178 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~ 178 (332)
+-++.+++. +.++...+.|.+++..+.+.|+|+|.+.+. .+...-.+++.+.... .++|++++||| +.
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~-------~p~~l~~~~~~~~~~~--~~i~i~AsGGI-~~ 241 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKF-------SPEELAELVPKLRSLA--PPVLLAAAGGI-NI 241 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCC-------CHHHHHHHHHHHhccC--CCceEEEECCC-CH
Confidence 344555542 357788999999999999999999998433 1111112222222211 16899999999 99
Q ss_pred HHHHHHHHcCcceeeecccc
Q 020013 179 RGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~f 198 (332)
+++.++.+.|+|++.+|+-+
T Consensus 242 ~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 242 ENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HHHHHHHHcCCcEEEEChhh
Confidence 99999999999999666543
No 201
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.03 E-value=0.00023 Score=63.16 Aligned_cols=182 Identities=13% Similarity=0.076 Sum_probs=106.1
Q ss_pred ecCCCCCCCCcHHHHHHHHhC--CCceeecCCCCCCHHHH-HHHHHHHHhh-cCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 14 VQAPLGPDISGPELVAAVANA--GGLGLLRAPDWEAPDYL-RDLIRKTRSL-TERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~a--GglG~i~~~~~~~~e~~-~~~i~~~r~~-~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
+|-.+. ..+.+-+..+.+. +.+.++..+ +.-.-.. ...++.+++. ++.++-+.+.+.+......+.+.+.|+|
T Consensus 6 l~vALD--~~~~~~a~~l~~~l~~~v~~~kvG-~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad 82 (216)
T PRK13306 6 LQIALD--NQDLESAIEDAKKVAEEVDIIEVG-TILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGAD 82 (216)
T ss_pred EEEEec--CCCHHHHHHHHHHccccCCEEEEC-hHHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCC
Confidence 344553 4555555555432 344555443 2100000 2346667765 5778888988877644444467889999
Q ss_pred EEEEccCCCcHH----HHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHH
Q 020013 90 VLQVSWGEYSEE----LVLEAHSAGVKVVPQVG---SFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDL 161 (332)
Q Consensus 90 ~I~~~~g~~~~~----~i~~~~~~g~~v~~~v~---s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~ 161 (332)
.+.+|.. -..+ .++.+++.|.++...+. +.+.++...+.+++.+++ -+..++ ..|.......+..+++.
T Consensus 83 ~vTvH~~-a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~--~~G~v~s~~~~~~ir~~ 159 (216)
T PRK13306 83 WVTVICA-AHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQ--LAGVAWGEKDLNKVKKL 159 (216)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhh--hcCCCCCHHHHHHHHHH
Confidence 9999943 2344 33444556777765543 456665556666655544 333332 11222222333444444
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
... +..+..+||| +++++......|||.+++|+++..+++
T Consensus 160 ~~~-~~~i~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 160 SDM-GFKVSVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred hcC-CCeEEEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCC
Confidence 321 3448999999 788888877889999999999776654
No 202
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.02 E-value=0.00015 Score=68.59 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=80.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CCEEEEecC---------CHHH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GVKVVPQVG---------SFDE 122 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~~v~~~v~---------s~~~ 122 (332)
..+.++|.|.|++|.+. + ..++++.+++. +.+|...++ +.++
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e 228 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQD 228 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHH
Confidence 34566899999988541 1 11355556653 344544332 4444
Q ss_pred H----HHHHHcCCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 123 A----RKAVNAGVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 123 a----~~a~~~g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
. +.+.+.|+|+|-+.+.... -+...+...+.+..++++.+ ++||++.|+|.+++++.++++-| ||.|.+|
T Consensus 229 ~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 229 YVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA---NIATGAVGLITSGAQAEEILQNNRADLIFIG 305 (337)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc---CCcEEEeCCCCCHHHHHHHHHcCCCChHHhh
Confidence 4 4456789999998543100 00000111356667777776 79999999999999999999987 9999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
..+++.++
T Consensus 306 R~~iadP~ 313 (337)
T PRK13523 306 RELLRNPY 313 (337)
T ss_pred HHHHhCcc
Confidence 99998765
No 203
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.01 E-value=2.5e-05 Score=71.03 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.+.+....+-+. +....+.++.++.+.+ ++||++.|||.+.+++.+++..||++|++||.++
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~--~~~~~~~~i~~i~~~~---~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSE--GRDTMLDVVERVAEQV---FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccc--cCcchHHHHHHHHHhC---CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 3556667788999999987764221 1124588889988877 7999999999999999999999999999999998
Q ss_pred cCcc
Q 020013 200 ASEE 203 (332)
Q Consensus 200 ~t~E 203 (332)
..++
T Consensus 108 ~~p~ 111 (253)
T PRK02083 108 ANPE 111 (253)
T ss_pred hCcH
Confidence 8653
No 204
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.96 E-value=0.00014 Score=68.85 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=81.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.+.|.|.|.+|.+. + ..++++.+++. +.+|...++ +.
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH
Confidence 34566899999998542 1 02566666653 456665543 35
Q ss_pred HHHH----HHHHcCCCEEEEecCCCCcccCC------CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-c
Q 020013 121 DEAR----KAVNAGVDAIIVQGREAGGHVIG------QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-A 189 (332)
Q Consensus 121 ~~a~----~a~~~g~D~ivv~G~eaGGh~~~------~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A 189 (332)
+++. .+.+.|+|+|-+.. |+.... ......+..++++.+ ++||++.|||.+++++.++++.| +
T Consensus 241 ~e~~~ia~~Le~~gvd~iev~~---g~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~G~i~t~~~a~~~l~~g~a 314 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVSS---GGNSPAQKIPVGPGYQVPFAERIRQEA---GIPVIAVGLITDPEQAEAILESGRA 314 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEECC---CCCCcccccCCCccccHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 5443 44567999998742 221100 111245666777776 79999999999999999999998 9
Q ss_pred ceeeeccccccCcc
Q 020013 190 QGICLGTRFVASEE 203 (332)
Q Consensus 190 ~gV~~GT~fl~t~E 203 (332)
|.|.+|+.++..++
T Consensus 315 D~V~~gR~~i~dP~ 328 (336)
T cd02932 315 DLVALGRELLRNPY 328 (336)
T ss_pred CeehhhHHHHhCcc
Confidence 99999999998765
No 205
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00024 Score=62.34 Aligned_cols=183 Identities=22% Similarity=0.305 Sum_probs=119.5
Q ss_pred HHHHHHHHhCCC--ceeecC-CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CCCcH
Q 020013 25 PELVAAVANAGG--LGLLRA-PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GEYSE 100 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~-~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~ 100 (332)
.+++..=.+.|. +=|+-. .+...-+...+.++++.+....|+.|+=-+.. .+.++.++..|+|=|+++- ....+
T Consensus 33 VelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s--~eD~~~ll~aGADKVSINsaAv~~p 110 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRS--VEDARKLLRAGADKVSINSAAVKDP 110 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCC--HHHHHHHHHcCCCeeeeChhHhcCh
Confidence 367777767774 444321 11122244566777777666778877533322 4567788899999998862 12234
Q ss_pred HHHHHHHh-CCCE--E------------------EEe-------cCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 101 ELVLEAHS-AGVK--V------------------VPQ-------VGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 101 ~~i~~~~~-~g~~--v------------------~~~-------v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+++.++.+ .|.. | +.. ...++-+++.++.|+-=|++...+.-|...| ..+
T Consensus 111 ~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G--yDl 188 (256)
T COG0107 111 ELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAG--YDL 188 (256)
T ss_pred HHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccC--cCH
Confidence 66666543 2221 1 100 1135667888999999999876655554322 358
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCccCCCCHHHHHHHhc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
.+++.+++.+ ++|||++||.+++++..+++..| ||++...|-|=... . .-...|+.+.+
T Consensus 189 ~l~~~v~~~v---~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~-~-~i~evK~yL~~ 248 (256)
T COG0107 189 ELTRAVREAV---NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGE-I-TIGEVKEYLAE 248 (256)
T ss_pred HHHHHHHHhC---CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCc-c-cHHHHHHHHHH
Confidence 8899999988 89999999999999999999888 99998888775543 2 23456666654
No 206
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.95 E-value=0.00055 Score=62.07 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=102.5
Q ss_pred HHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-C-CC--
Q 020013 25 PELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G-EY-- 98 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g-~~-- 98 (332)
.++|..-.+.|. +=++-..+ ..+.. .+.++++.+ ++.|+-++=-+. .+.++.+++.|++-|.++- . ..
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg-g~~~n-~~~i~~i~~-~~~~vqvGGGIR---~e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA-DDASL-AAALEALRA-YPGGLQVGGGVN---SENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC-CCccc-HHHHHHHHh-CCCCEEEeCCcc---HHHHHHHHHcCCCEEEEchHHHhCCC
Confidence 367777777775 33332211 11211 345566655 456655542232 3778889999999988751 1 11
Q ss_pred -cHHHHHHH-HhCC--C--------------EEEE----ec--CCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 99 -SEELVLEA-HSAG--V--------------KVVP----QV--GSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 99 -~~~~i~~~-~~~g--~--------------~v~~----~v--~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
.+++++.+ +..| . +|.. .. .++.+ +.+..+.|++.|++...+--|...| ..+.
T Consensus 120 ~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G--~d~e 197 (262)
T PLN02446 120 IDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLG--IDEE 197 (262)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccC--CCHH
Confidence 14455444 3322 1 1110 00 13444 5778888999999976544443222 3478
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc--Ccceeeecccc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRF 198 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~--GA~gV~~GT~f 198 (332)
++.++.+.. ++|||++|||++.+|+.+...+ |..+|++|.++
T Consensus 198 l~~~l~~~~---~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 198 LVALLGEHS---PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHHHHHhhC---CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 888888876 7999999999999999999988 57999999998
No 207
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.93 E-value=0.00054 Score=61.43 Aligned_cols=139 Identities=19% Similarity=0.084 Sum_probs=87.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccC-CCcHHHHHHH-HhCC-CEEE--Eec----------
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWG-EYSEELVLEA-HSAG-VKVV--PQV---------- 117 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g-~~~~~~i~~~-~~~g-~~v~--~~v---------- 117 (332)
+.++++.+....|+-++=-+. ..+.++.+++.|++-|.++.. ...+++++.+ +..| -.++ ..+
T Consensus 63 ~~i~~i~~~~~~~v~vGGGIr--s~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 63 MYIKEISKIGFDWIQVGGGIR--DIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred HHHHHHHhhCCCCEEEeCCcC--CHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 556666542223654432222 256778888899998877521 1233455543 2222 1111 111
Q ss_pred -----CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 118 -----GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 118 -----~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
.++ +.++++.+.|+..+++..-+.-|...| ..++++.++.+. ..|++++|||++.+|+.++..+|++|
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G--~d~el~~~~~~~----~~~viasGGv~s~~Dl~~l~~~G~~g 214 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKG--IDYNVKDYARLI----RGLKEYAGGVSSDADLEYLKNVGFDY 214 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcC--cCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 123 445667788999999876554443222 346677777653 34699999999999999999999999
Q ss_pred eeeccccc
Q 020013 192 ICLGTRFV 199 (332)
Q Consensus 192 V~~GT~fl 199 (332)
|.+|+++.
T Consensus 215 vivg~Aly 222 (232)
T PRK13586 215 IIVGMAFY 222 (232)
T ss_pred EEEehhhh
Confidence 99999975
No 208
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.90 E-value=0.0006 Score=65.75 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=55.5
Q ss_pred HHHHHcCCCEEEEecCCCCc-c---c--CCCCc-hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeec
Q 020013 124 RKAVNAGVDAIIVQGREAGG-H---V--IGQDG-LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLG 195 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGG-h---~--~~~~~-~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~G 195 (332)
+.+.+.|+|+|-+.+..... + . ..... .+.+...+++.+ ++||++.|||.+++++.++++-| ||.|.+|
T Consensus 259 ~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 259 KILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV---DVPVIMAGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred HHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 45567899999986432110 0 0 00011 134566777776 79999999999999999999976 9999999
Q ss_pred cccccCcc
Q 020013 196 TRFVASEE 203 (332)
Q Consensus 196 T~fl~t~E 203 (332)
..++..++
T Consensus 336 R~~ladP~ 343 (382)
T cd02931 336 RPLLADPD 343 (382)
T ss_pred hHhHhCcc
Confidence 99997754
No 209
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.89 E-value=0.00016 Score=64.96 Aligned_cols=189 Identities=21% Similarity=0.283 Sum_probs=105.3
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-----------------CCCH-HHHHHHHHHHHhh-cCCc
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-----------------WEAP-DYLRDLIRKTRSL-TERP 65 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-----------------~~~~-e~~~~~i~~~r~~-~~~p 65 (332)
+...-..|||.++-+ + -+.+..++.||..+|-..+ |.+. +...+.-+++-.. .+.|
T Consensus 9 ~~i~~~~pIig~gaG----t-GlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tP 83 (268)
T PF09370_consen 9 AQIKAGKPIIGAGAG----T-GLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTP 83 (268)
T ss_dssp HHHHTT--EEEEEES----S-HHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-
T ss_pred HHHhCCCceEEEeec----c-chhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCC
Confidence 344456799955432 2 4566677788888874311 1111 2222333333222 3578
Q ss_pred EEEEeecCCCC---HHHHHHHHhcCCcEEEEc--c--------------CC-Cc--HHHHHHHHhCCCEEEEecCCHHHH
Q 020013 66 FGVGVVLAFPH---NENIKAILSEKVAVLQVS--W--------------GE-YS--EELVLEAHSAGVKVVPQVGSFDEA 123 (332)
Q Consensus 66 ~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~--~--------------g~-~~--~~~i~~~~~~g~~v~~~v~s~~~a 123 (332)
+-.++...+|. ..+++.+.+.|...|+-. . |. +. -++++..++.|+..++-|-++++|
T Consensus 84 ViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A 163 (268)
T PF09370_consen 84 VIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQA 163 (268)
T ss_dssp EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHH
T ss_pred EEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHH
Confidence 77777777664 567888888898888621 0 10 00 145667788899999999999999
Q ss_pred HHHHHcCCCEEEEe-cCCCCcccCCC-C----chhhhHHHHHHHhCC--CC-CcEEeecCcCCHHHHHHHHH--cCccee
Q 020013 124 RKAVNAGVDAIIVQ-GREAGGHVIGQ-D----GLISLLPMVVDLIGD--RD-IPIIAAGGIVDARGYVAALS--LGAQGI 192 (332)
Q Consensus 124 ~~a~~~g~D~ivv~-G~eaGGh~~~~-~----~~~~ll~~i~~~~~~--~~-iPviaaGGI~~~~~v~~al~--~GA~gV 192 (332)
+...++|+|.|+++ |...||..+.. . ....++.++.++... .+ +-++-.|-|.+|+|+...+. -|++|.
T Consensus 164 ~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf 243 (268)
T PF09370_consen 164 RAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGF 243 (268)
T ss_dssp HHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE
T ss_pred HHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence 99999999999995 67777765221 1 124455666665432 13 34555666999999999987 468999
Q ss_pred eecccc
Q 020013 193 CLGTRF 198 (332)
Q Consensus 193 ~~GT~f 198 (332)
+-||.+
T Consensus 244 ~G~Ss~ 249 (268)
T PF09370_consen 244 IGASSM 249 (268)
T ss_dssp EESTTT
T ss_pred ecccch
Confidence 988875
No 210
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.88 E-value=6.1e-05 Score=67.06 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=53.3
Q ss_pred HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 126 a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
....|+ .+++.--..-|.. .-..++++.++.+.. ++||+++|||++.+++.++..+||++|.+||+|..
T Consensus 150 ~~~~g~-~ii~tdI~~dGt~--~G~d~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 150 LNSFDY-GLIVLDIHSVGTM--KGPNLELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHhcCC-EEEEEECCccccC--CCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 345677 6666544333332 124588889988876 79999999999999999999999999999999853
No 211
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.86 E-value=0.00014 Score=69.37 Aligned_cols=93 Identities=29% Similarity=0.422 Sum_probs=64.7
Q ss_pred HHHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ELVLEAHSAGVKVVPQVG---SFDEARKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~---s~~~a~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
+.++.+++.++.+-..++ ..+.++.++++|+|.|+++|+. .-.|..+. ..+..+.++.+.+ ++|||+ |+|.
T Consensus 123 ~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~-~~p~~l~~~i~~~---~IPVI~-G~V~ 197 (369)
T TIGR01304 123 ERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTS-GEPLNLKEFIGEL---DVPVIA-GGVN 197 (369)
T ss_pred HHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCC-CCHHHHHHHHHHC---CCCEEE-eCCC
Confidence 456777777644433332 3456678889999999998863 11221111 2244566666665 799997 9999
Q ss_pred CHHHHHHHHHcCcceeeecccc
Q 020013 177 DARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.+++.+++.+|||+|++|+.-
T Consensus 198 t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred CHHHHHHHHHcCCCEEEECCCC
Confidence 9999999999999999987543
No 212
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.83 E-value=0.00042 Score=65.77 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.++|.|.|.+|.+. + +.++++.+++. +++|...++ +.
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~ 235 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTE 235 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCH
Confidence 34566899999998542 1 12455666653 466776553 44
Q ss_pred HHH----HHHHHcCCCEEEEecCCCC-----cccCCC-----CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 121 DEA----RKAVNAGVDAIIVQGREAG-----GHVIGQ-----DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 121 ~~a----~~a~~~g~D~ivv~G~eaG-----Gh~~~~-----~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
+++ +.+.+.|+|+|-+.+.... ++.... ...+.+..++++.+ ++||++.|+|.+++++.++++
T Consensus 236 eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i~t~~~a~~~l~ 312 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT---KTPLMVTGGFRTRAAMEQALA 312 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHH
Confidence 444 4456789999988542110 000000 01135566777777 799999999999999999999
Q ss_pred cC-cceeeeccccccCcc
Q 020013 187 LG-AQGICLGTRFVASEE 203 (332)
Q Consensus 187 ~G-A~gV~~GT~fl~t~E 203 (332)
.| ||.|.+|..+++.++
T Consensus 313 ~g~aD~V~lgR~~iadP~ 330 (338)
T cd04733 313 SGAVDGIGLARPLALEPD 330 (338)
T ss_pred cCCCCeeeeChHhhhCcc
Confidence 87 899999999998765
No 213
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.83 E-value=0.00013 Score=69.67 Aligned_cols=92 Identities=30% Similarity=0.459 Sum_probs=62.6
Q ss_pred HHHHHHHhCCCEEEEecC---CHHHHHHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 101 ELVLEAHSAGVKVVPQVG---SFDEARKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~---s~~~a~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
++++.+++.++.+...++ ..+.++.++++|+|+|+++|+. .-.|. +....+..+.++.+.. ++|||+ |+|.
T Consensus 122 ~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~-~~~~~~~~i~~~ik~~---~ipVIa-G~V~ 196 (368)
T PRK08649 122 ERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHV-SKEGEPLNLKEFIYEL---DVPVIV-GGCV 196 (368)
T ss_pred HHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhcc-CCcCCHHHHHHHHHHC---CCCEEE-eCCC
Confidence 345556666655544332 3466778889999999998853 22343 1111233344444444 799998 9999
Q ss_pred CHHHHHHHHHcCcceeeeccc
Q 020013 177 DARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+++.+++.+|||+|.+|..
T Consensus 197 t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 197 TYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred CHHHHHHHHHcCCCEEEECCC
Confidence 999999999999999999843
No 214
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.82 E-value=0.00089 Score=67.08 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=117.1
Q ss_pred CCcH-HHHHHHHhCCC--ceeecCCCC-CC---HHHHHHHHHHHHhhcCCcEEEEeecCCC---------CHHHHHHHHh
Q 020013 22 ISGP-ELVAAVANAGG--LGLLRAPDW-EA---PDYLRDLIRKTRSLTERPFGVGVVLAFP---------HNENIKAILS 85 (332)
Q Consensus 22 ~s~~-~la~avs~aGg--lG~i~~~~~-~~---~e~~~~~i~~~r~~~~~p~gvnl~~~~~---------~~~~~~~~~~ 85 (332)
+.+| ++|..-.+.|. +=++-.-.. .+ -+...+.++++.+....|+-|+=-+... .-+.++.+++
T Consensus 266 ~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 266 LGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 3455 56666656664 444432111 11 1224566777766666787664322221 1266888999
Q ss_pred cCCcEEEEccC--CCc-----------HHHHHHHH-hCCCE-EEEec---------------------------------
Q 020013 86 EKVAVLQVSWG--EYS-----------EELVLEAH-SAGVK-VVPQV--------------------------------- 117 (332)
Q Consensus 86 ~~~~~I~~~~g--~~~-----------~~~i~~~~-~~g~~-v~~~v--------------------------------- 117 (332)
.|+|-|.++-. ..| +++++.+- ..|-. |+..+
T Consensus 346 ~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (538)
T PLN02617 346 SGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWY 425 (538)
T ss_pred cCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEE
Confidence 99999988621 011 34555443 23322 22111
Q ss_pred -------------CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHH
Q 020013 118 -------------GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAA 184 (332)
Q Consensus 118 -------------~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~a 184 (332)
...+-++++++.|+.-|++...+.-|...| ..+.++..+.+.+ ++|||++||+++.+++.++
T Consensus 426 ~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G--~d~~l~~~v~~~~---~ipviasGG~g~~~d~~~~ 500 (538)
T PLN02617 426 QCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKG--FDIELVKLVSDAV---TIPVIASSGAGTPEHFSDV 500 (538)
T ss_pred EEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccC--cCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHH
Confidence 113456778889999999866544443212 3478888888887 8999999999999999999
Q ss_pred HH-cCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 185 LS-LGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 185 l~-~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+. .||+++..++-|-...- .-...|+.+.+
T Consensus 501 ~~~~~~~a~~aa~~fh~~~~--~~~~~k~~l~~ 531 (538)
T PLN02617 501 FSKTNASAALAAGIFHRKEV--PISSVKEHLLE 531 (538)
T ss_pred HhcCCccEEEEEeeeccCCC--CHHHHHHHHHH
Confidence 97 67999999988776633 23556777665
No 215
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.81 E-value=0.00014 Score=61.94 Aligned_cols=90 Identities=27% Similarity=0.328 Sum_probs=65.8
Q ss_pred cHHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHH---HhCCCCCcEEee
Q 020013 99 SEELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVD---LIGDRDIPIIAA 172 (332)
Q Consensus 99 ~~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~---~~~~~~iPviaa 172 (332)
..+.++.+++. ..++...+.+.++++.+.++|+|.|.++++ . ...++++++ ... .++-+.++
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~----~~~~~~~v~~l~~~~-~~v~ie~S 133 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------S----PEDLKEAVEELRELN-PRVKIEAS 133 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------C----HHHHHHHHHHHHHHT-TTSEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------C----HHHHHHHHHHHhhcC-CcEEEEEE
Confidence 45566666652 345889999999999999999999999765 1 233344433 222 25889999
Q ss_pred cCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 173 GGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 173 GGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
||| |.+++.++...|+|.+.+|+....+
T Consensus 134 GGI-~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 134 GGI-TLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp SSS-STTTHHHHHHTT-SEEEECHHHHSB
T ss_pred CCC-CHHHHHHHHhcCCCEEEcChhhcCC
Confidence 999 9999999999999999999875443
No 216
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.81 E-value=0.00032 Score=66.94 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=55.6
Q ss_pred HHHHHcCCCEEEEecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 124 RKAVNAGVDAIIVQGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+.+.|+|+|-+.+........ ........+..+++.+. .++||++.|||.+++++.++++.|||.|.+|+.++..+
T Consensus 242 ~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadP 320 (353)
T cd04735 242 DKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA-GRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDP 320 (353)
T ss_pred HHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhC-CCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCc
Confidence 45667899999986431111100 11112445555666543 26899999999999999999999999999999999774
Q ss_pred c
Q 020013 203 E 203 (332)
Q Consensus 203 E 203 (332)
+
T Consensus 321 d 321 (353)
T cd04735 321 D 321 (353)
T ss_pred c
Confidence 3
No 217
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.80 E-value=0.00043 Score=65.65 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=78.4
Q ss_pred HHHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-CC-EEEEecC------------
Q 020013 81 KAILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-GV-KVVPQVG------------ 118 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g~-~v~~~v~------------ 118 (332)
..+.++|.|.|++|++. + ..++++.+++. |. .|...++
T Consensus 159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCC
Confidence 45666899999998543 1 12455666653 33 3444332
Q ss_pred CHHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceee
Q 020013 119 SFDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGIC 193 (332)
Q Consensus 119 s~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~ 193 (332)
+.++ ++.+.+.|+|+|-+........ .....+.+..++++.+ ++||++.|||. ++++.++++.| ||.|.
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~--~~~~~~~~~~~ik~~~---~ipvi~~G~i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAGN--PEDQPPDFLDFLRKAF---KGPLIAAGGYD-AESAEAALADGKADLVA 312 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCc--ccccchHHHHHHHHHc---CCCEEEECCCC-HHHHHHHHHcCCCCEEE
Confidence 3333 3455678999998843111110 1123466777888877 79999999995 99999999976 99999
Q ss_pred eccccccCcc
Q 020013 194 LGTRFVASEE 203 (332)
Q Consensus 194 ~GT~fl~t~E 203 (332)
+|..+++.++
T Consensus 313 ~gR~~ladP~ 322 (338)
T cd02933 313 FGRPFIANPD 322 (338)
T ss_pred eCHhhhhCcC
Confidence 9999998754
No 218
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.79 E-value=9.9e-05 Score=66.09 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 121 DEARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.++...+.|+|.+.+..-++ .|+ ...+.++.++.+.+ ++||++.|||.+.+++.+++.+||++|++||.+
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~~~g~----~~~~~~i~~i~~~~---~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~ 106 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGAKAGK----PVNLELIEAIVKAV---DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA 106 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCC----cccHHHHHHHHHHC---CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 446666678999988854321 122 23477888888776 799999999999999999999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
+..++
T Consensus 107 l~~~~ 111 (233)
T PRK00748 107 VKNPE 111 (233)
T ss_pred HhCHH
Confidence 97643
No 219
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.79 E-value=0.00097 Score=63.38 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=55.7
Q ss_pred HHHHHcC-CCEEEEec-CCCC----cccC-----CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cce
Q 020013 124 RKAVNAG-VDAIIVQG-REAG----GHVI-----GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQG 191 (332)
Q Consensus 124 ~~a~~~g-~D~ivv~G-~eaG----Gh~~-----~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~g 191 (332)
+.+.+.| +|+|-+.+ .... .+.. .....+.++.++++.+ ++||++.|||.+++++.++++-| +|+
T Consensus 235 ~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~ipvi~~G~i~~~~~~~~~l~~~~~D~ 311 (343)
T cd04734 235 ARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV---DLPVFHAGRIRDPAEAEQALAAGHADM 311 (343)
T ss_pred HHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc---CCCEEeeCCCCCHHHHHHHHHcCCCCe
Confidence 4556788 89999843 2111 0100 0112356677777776 79999999999999999999975 999
Q ss_pred eeeccccccCcc
Q 020013 192 ICLGTRFVASEE 203 (332)
Q Consensus 192 V~~GT~fl~t~E 203 (332)
|.+|..++..++
T Consensus 312 V~~gR~~ladP~ 323 (343)
T cd04734 312 VGMTRAHIADPH 323 (343)
T ss_pred eeecHHhHhCcc
Confidence 999999998764
No 220
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.79 E-value=0.0001 Score=65.94 Aligned_cols=89 Identities=25% Similarity=0.312 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++...+.|+|.+.+..-.+.. . +....+.++.++.+.+ ++|+++.|||.+.+++.+++..|||.|++||..+
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~-~-~~~~~~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAK-G-GEPVNLELIEEIVKAV---GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccc-c-CCCCCHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 355666677899999886543321 1 1123477888888876 7999999999999999999999999999999988
Q ss_pred cCccCCCCHHHHHHHhcCC
Q 020013 200 ASEESYAHPEYKRKLVEMD 218 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~~ 218 (332)
.. ++.+++......
T Consensus 107 ~d-----p~~~~~i~~~~g 120 (234)
T cd04732 107 KN-----PELVKELLKEYG 120 (234)
T ss_pred hC-----hHHHHHHHHHcC
Confidence 54 334555555543
No 221
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.77 E-value=0.00062 Score=60.22 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=83.0
Q ss_pred HHHHHHHhhcCCcEEEEee-cCCCCHHHHHHHHhcCCcEEEEccCCC---cHHHHHHHHhCCCEEEEec--CCH------
Q 020013 53 DLIRKTRSLTERPFGVGVV-LAFPHNENIKAILSEKVAVLQVSWGEY---SEELVLEAHSAGVKVVPQV--GSF------ 120 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~-~~~~~~~~~~~~~~~~~~~I~~~~g~~---~~~~i~~~~~~g~~v~~~v--~s~------ 120 (332)
+.++.+|+.++.++-+.++ +..+....++.+.+.|+|.|.+|.-.. ....++.+++.|++++..+ .++
T Consensus 45 ~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~ 124 (215)
T PRK13813 45 GIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFI 124 (215)
T ss_pred HHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCH
Confidence 3466666655555556654 222223345778889999999995321 2345677788898876522 221
Q ss_pred -HHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH--HHHHHHHcCcceee
Q 020013 121 -DEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR--GYVAALSLGAQGIC 193 (332)
Q Consensus 121 -~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~--~v~~al~~GA~gV~ 193 (332)
+.. +.+.+.|.|+..+.. .....+.++++.... ++ .+..|||. .+ ++..++..|||.++
T Consensus 125 ~~~~~~v~~m~~e~G~~g~~~~~-----------~~~~~i~~l~~~~~~-~~-~ivdgGI~-~~g~~~~~~~~aGad~iV 190 (215)
T PRK13813 125 QPHADKLAKLAQEAGAFGVVAPA-----------TRPERVRYIRSRLGD-EL-KIISPGIG-AQGGKAADAIKAGADYVI 190 (215)
T ss_pred HHHHHHHHHHHHHhCCCeEEECC-----------CcchhHHHHHHhcCC-Cc-EEEeCCcC-CCCCCHHHHHHcCCCEEE
Confidence 122 224457777665421 113445566655421 22 33889995 44 48999999999999
Q ss_pred eccccccCc
Q 020013 194 LGTRFVASE 202 (332)
Q Consensus 194 ~GT~fl~t~ 202 (332)
+|+.++.++
T Consensus 191 ~Gr~I~~~~ 199 (215)
T PRK13813 191 VGRSIYNAA 199 (215)
T ss_pred ECcccCCCC
Confidence 999977654
No 222
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.75 E-value=0.00021 Score=65.51 Aligned_cols=89 Identities=24% Similarity=0.266 Sum_probs=67.0
Q ss_pred HHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC----CCCCcEEeecC
Q 020013 101 ELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG----DRDIPIIAAGG 174 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~----~~~iPviaaGG 174 (332)
+.++.++.. ..+|...|.+.+++..+.++|+|.|.++++. ...+.++++.+. ..++.+.++||
T Consensus 171 ~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~~-----------~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNMT-----------PEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCCC-----------HHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 344555553 3678899999999999999999999997651 223344444331 12578999999
Q ss_pred cCCHHHHHHHHHcCcceeeeccccccC
Q 020013 175 IVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 175 I~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
| +.+++.++.+.|+|.+.+|+.....
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 9 9999999999999999999875533
No 223
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.73 E-value=0.00013 Score=65.79 Aligned_cols=77 Identities=29% Similarity=0.334 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.+.|+...+.|+|.+.+---++ .|+. ..+.+++++.+.+ .+||.+.|||.+.+++..++.+||+.|.+||..
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~g~~----~n~~~i~~i~~~~---~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAFGRG----SNRELLAEVVGKL---DVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCCC----ccHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 3556666677888777633221 1332 3468888998877 799999999999999999999999999999999
Q ss_pred ccCcc
Q 020013 199 VASEE 203 (332)
Q Consensus 199 l~t~E 203 (332)
+..+|
T Consensus 108 l~~p~ 112 (241)
T PRK14024 108 LENPE 112 (241)
T ss_pred hCCHH
Confidence 97655
No 224
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.71 E-value=0.0011 Score=57.36 Aligned_cols=158 Identities=23% Similarity=0.286 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC----C--CHHHHHHHHhcCCcEEEEc--cCC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF----P--HNENIKAILSEKVAVLQVS--WGE 97 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~----~--~~~~~~~~~~~~~~~I~~~--~g~ 97 (332)
.++....+.|.-|++..+ +.++...+.... .+.|+-+++-.+. . ..+..+.+.+.|+|.+.+. ++.
T Consensus 17 ~~~~~~~~~gv~gi~~~g-----~~i~~~~~~~~~-~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~ 90 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP-----GYVRLAADALAG-SDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGS 90 (201)
T ss_pred HHHHHHHHhCCcEEEECH-----HHHHHHHHHhCC-CCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHH
Confidence 444555555655554432 333322222221 0356556554433 1 1345667788899999874 211
Q ss_pred -Cc---H---HHHHHHHhC---CCEEEEecC-----CHHHHHH----HHHcCCCEEEEecCCCCcccCCCCchhhhHHHH
Q 020013 98 -YS---E---ELVLEAHSA---GVKVVPQVG-----SFDEARK----AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMV 158 (332)
Q Consensus 98 -~~---~---~~i~~~~~~---g~~v~~~v~-----s~~~a~~----a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i 158 (332)
++ . ++++.+.+. +++++.... +.++..+ +.+.|+|+|........++ ..+..+.++
T Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~-----~~~~~~~~i 165 (201)
T cd00945 91 LKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG-----ATVEDVKLM 165 (201)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC-----CCHHHHHHH
Confidence 11 2 344445443 788775432 4444333 4578999998743211111 234556666
Q ss_pred HHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 159 VDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 159 ~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++..+. ++|+++.||+.+.+.+..++.+||+|+.+|
T Consensus 166 ~~~~~~-~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 166 KEAVGG-RVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHhccc-CCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 665531 479999999988999999999999999876
No 225
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.70 E-value=0.00027 Score=64.74 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=65.9
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCc
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI 175 (332)
.+.++.+++. ..+|...+.+.++++.+.++|+|.|.+++. .+ .-+.+..+.++ ..++.+-++|||
T Consensus 176 ~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn~-------~~----e~l~~~v~~l~~~~~~~~leasGGI 244 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDKF-------TP----QQLHHLHERLKFFDHIPTLAAAGGI 244 (277)
T ss_pred HHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECCC-------CH----HHHHHHHHHHhccCCCEEEEEECCC
Confidence 3456666654 577889999999999999999999999643 11 22233333331 126789999999
Q ss_pred CCHHHHHHHHHcCcceeeecccc
Q 020013 176 VDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.+++.++...|+|.+.+|+-+
T Consensus 245 -~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 -NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred -CHHHHHHHHhcCCCEEEeCcce
Confidence 9999999999999999999864
No 226
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.68 E-value=0.00056 Score=62.88 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=69.3
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+-++++++. ..+|...|.|.++++.+.++|+|.|.+++. . .+-+.++++.++. ++.+-++|||
T Consensus 184 ~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnm-------s----pe~l~~av~~~~~-~~~leaSGGI- 250 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNM-------S----LEQIEQAITLIAG-RSRIECSGNI- 250 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhcC-ceEEEEECCC-
Confidence 3455666653 367889999999999999999999999765 1 2334455544433 6789999999
Q ss_pred CHHHHHHHHHcCcceeeeccccccCc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
+.+++.++...|+|.+.+|.-.-..+
T Consensus 251 ~~~ni~~yA~tGVD~Is~galthsa~ 276 (290)
T PRK06559 251 DMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred CHHHHHHHHhcCCCEEEeCccccCCc
Confidence 99999999999999999998654333
No 227
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.67 E-value=0.00016 Score=64.67 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=54.9
Q ss_pred CHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 119 SFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 119 s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
++.+ ++...+. +|.+++-..++- ..+....+.++.++.+.. ++||+++|||++.+++.+++.+|+++|++||.
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga--~~g~~~n~~~i~~i~~~~---~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA--FEGKPKNLDVVKNIIRET---GLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch--hcCCcchHHHHHHHHhhC---CCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 4444 4444455 887777443311 012223477888888765 79999999999999999999999999999999
Q ss_pred cc
Q 020013 198 FV 199 (332)
Q Consensus 198 fl 199 (332)
.+
T Consensus 105 a~ 106 (228)
T PRK04128 105 AF 106 (228)
T ss_pred hc
Confidence 77
No 228
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.66 E-value=0.00023 Score=63.78 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+-++...+.|+|.+++...+..|.. ....+.++.++.+.. ++||+++|||.+.+++.+++..|+++|++||..+.
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~~~~~--~~~n~~~~~~i~~~~---~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDASKRG--REPLFELISNLAEEC---FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCCcccC--CCCCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 4455566789998888655443321 123467788888776 79999999999999999999999999999999886
Q ss_pred Ccc
Q 020013 201 SEE 203 (332)
Q Consensus 201 t~E 203 (332)
.+|
T Consensus 109 ~~~ 111 (232)
T TIGR03572 109 NPD 111 (232)
T ss_pred CHH
Confidence 643
No 229
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.66 E-value=0.00039 Score=64.03 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=67.4
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCc
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI 175 (332)
.+.++++++. ..++...|.|.+++..+.+.|+|+|.++++. ..-+++.++.++ ..++.+.++|||
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~LDnm~-----------~e~vk~av~~~~~~~~~v~ieaSGGI 255 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLLDNFP-----------VWQTQEAVQRRDARAPTVLLESSGGL 255 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEeCCCC-----------HHHHHHHHHHHhccCCCEEEEEECCC
Confidence 4455666542 4678899999999999999999999997652 222333333221 126789999999
Q ss_pred CCHHHHHHHHHcCcceeeeccccccC
Q 020013 176 VDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|.+++.++...|+|.+.+|+-....
T Consensus 256 -~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 256 -TLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred -CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 9999999999999999999865533
No 230
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.63 E-value=8.9e-05 Score=67.67 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=64.0
Q ss_pred HHHcCCCEEEEecC---------------CCCcccCCCC--chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC
Q 020013 126 AVNAGVDAIIVQGR---------------EAGGHVIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 126 a~~~g~D~ivv~G~---------------eaGGh~~~~~--~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G 188 (332)
..+...|.+|+.|. |.||-.+.+. .....++++...... +||||..|||+++.|+.+-+.+|
T Consensus 275 ~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g-~IpiIG~GGV~SG~DA~EkiraG 353 (398)
T KOG1436|consen 275 VKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRG-KIPIIGCGGVSSGKDAYEKIRAG 353 (398)
T ss_pred HHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccC-CCceEeecCccccHhHHHHHhcC
Confidence 45678999998653 4566542222 235667777776643 79999999999999999999999
Q ss_pred cceeeeccccccCccCCCCHHHHHHHhc
Q 020013 189 AQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 189 A~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
|+-||++|+|..---. +-+..|+.+.+
T Consensus 354 ASlvQlyTal~yeGp~-i~~kIk~El~~ 380 (398)
T KOG1436|consen 354 ASLVQLYTALVYEGPA-IIEKIKRELSA 380 (398)
T ss_pred chHHHHHHHHhhcCch-hHHHHHHHHHH
Confidence 9999999998754322 33445555543
No 231
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.63 E-value=0.00018 Score=63.58 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=53.8
Q ss_pred HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 124 RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+.++..|...|-+++. |.. ....++.++++... ++|++..|||.+++++.+++.+|||+|++||.+...
T Consensus 142 ~aae~~g~~ivyLe~S---G~~----~~~e~I~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 142 LAAEYLGMPIVYLEYS---GAY----GPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHcCCeEEEeCCC---CCc----CCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 3456678777777622 221 33667778777652 589999999999999999999999999999999865
No 232
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.61 E-value=0.00079 Score=61.79 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=67.8
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+-++++++. ..++...|.|.+++..+.++|+|.|.++++. ..-+.+.++.++. ..|+-++|||
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s-----------~e~l~~av~~~~~-~~~leaSGGI- 247 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNMT-----------PDTLREAVAIVAG-RAITEASGRI- 247 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCC-----------HHHHHHHHHHhCC-CceEEEECCC-
Confidence 3455566654 3678899999999999999999999997651 2334454444432 5789999999
Q ss_pred CHHHHHHHHHcCcceeeeccccc
Q 020013 177 DARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|.+++.++...|+|.+.+|+..-
T Consensus 248 ~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 248 TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred CHHHHHHHHhcCCCEEEeChhhc
Confidence 99999999999999999998644
No 233
>PRK08185 hypothetical protein; Provisional
Probab=97.60 E-value=0.0088 Score=55.12 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE
Q 020013 22 ISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~ 93 (332)
+.+.+.+.++-+|- ..++|-. . .+... .+...+..+.+....|+.+++=-- .+.+.+..+++.|.+.|.+
T Consensus 20 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~-~~~~~~~~~a~~~~vPV~lHLDHg-~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 20 VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGD-NFFAYVRERAKRSPVPFVIHLDHG-ATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccH-HHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCEEEE
Confidence 45666666665542 3333311 1 12222 355556655555677887775322 2357788899999999988
Q ss_pred ccCCCc-HH-------HHHHHHhCCCEEEE----------------e---cCCHHHHHHHHHc-CCCEEEE-----ecCC
Q 020013 94 SWGEYS-EE-------LVLEAHSAGVKVVP----------------Q---VGSFDEARKAVNA-GVDAIIV-----QGRE 140 (332)
Q Consensus 94 ~~g~~~-~~-------~i~~~~~~g~~v~~----------------~---v~s~~~a~~a~~~-g~D~ivv-----~G~e 140 (332)
.....| ++ +++.++..|+.+=. . .++++++....+. |+|++.+ .|..
T Consensus 98 D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y 177 (283)
T PRK08185 98 DGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIY 177 (283)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCc
Confidence 633333 22 33444555554310 1 4588999998876 9999988 3332
Q ss_pred CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 141 AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 141 aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.++. .+.-.+.++.++++.+ ++|+++-||++.+ +++.+++.+|..-|=++|.+..+
T Consensus 178 ~~~~--kp~L~~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a 234 (283)
T PRK08185 178 PKDK--KPELQMDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYA 234 (283)
T ss_pred CCCC--CCCcCHHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHH
Confidence 2221 1223488999998887 7999999998665 55788999999999999986543
No 234
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.60 E-value=0.00025 Score=63.84 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++.+.+.|+|.+.+.--+..-. +....+..+.++.+.. ++|+++.|||.+.+++..++.+||++|.+||..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~--~~~~~~~~i~~i~~~~---~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFE--GERKNAEAIEKIIEAV---GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhc--CCcccHHHHHHHHHHc---CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3556667788999988754321110 1223466777777766 7999999999999999999999999999999987
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 110 ~~~ 112 (241)
T PRK13585 110 ENP 112 (241)
T ss_pred hCh
Confidence 543
No 235
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.59 E-value=0.0009 Score=61.96 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=69.9
Q ss_pred HHHHHHHHh------CCCEEEEecCCHHHHHHHHH------cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCC
Q 020013 100 EELVLEAHS------AGVKVVPQVGSFDEARKAVN------AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDI 167 (332)
Q Consensus 100 ~~~i~~~~~------~g~~v~~~v~s~~~a~~a~~------~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~i 167 (332)
.+.++++++ ...+|...|.|.++++.+.+ +|+|.|.++++-..... . ..+...+.+.++.++. ..
T Consensus 187 ~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~-~-~~~~e~l~~av~~~~~-~~ 263 (308)
T PLN02716 187 TNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-G-DVDVSMLKEAVELING-RF 263 (308)
T ss_pred HHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc-c-CCCHHHHHHHHHhhCC-Cc
Confidence 455666655 13578899999999999999 99999999887211110 0 1123445555554432 57
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|+-++||| +.+++.++...|+|.+.+|.-.-
T Consensus 264 ~lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 264 ETEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred eEEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 89999999 99999999999999999998543
No 236
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.55 E-value=0.0008 Score=61.95 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=67.3
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++++++. ..+|...|.|.++++.+.++|+|.|.++++ . .+.+.+.++.++. ++.+-++||| |
T Consensus 193 ~~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImLDnm-------s----pe~l~~av~~~~~-~~~lEaSGGI-t 259 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLLDNF-------T----LDMMREAVRVTAG-RAVLEVSGGV-N 259 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHhhcC-CeEEEEECCC-C
Confidence 4556666653 357888999999999999999999999765 1 2334444444432 5789999999 9
Q ss_pred HHHHHHHHHcCcceeeeccccc
Q 020013 178 ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+++.++...|+|.+.+|.-.-
T Consensus 260 ~~ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 260 FDTVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 9999999999999999998643
No 237
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00056 Score=59.24 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=84.4
Q ss_pred HHHHhcCCcEEEEccCCCcH----HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCC--CCchhhh
Q 020013 81 KAILSEKVAVLQVSWGEYSE----ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIG--QDGLISL 154 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~----~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~--~~~~~~l 154 (332)
-.+.-.|+|.|.+-....+. .+.+..++.|+.-+..|++.+|..++++.|+..|-+.++.- |.+. -..+-.|
T Consensus 153 ~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNNRnL--~sFeVDlstTskL 230 (289)
T KOG4201|consen 153 YEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNNRNL--HSFEVDLSTTSKL 230 (289)
T ss_pred HHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecCCcc--ceeeechhhHHHH
Confidence 34455689998764332232 44556677899999999999999999999999998876532 2211 0122334
Q ss_pred HHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 155 LPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 155 l~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+..+.+ ++-+++-.||.+++|++.+-..|..+|.+|-.+|....
T Consensus 231 ~E~i~k-----Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD 274 (289)
T KOG4201|consen 231 LEGIPK-----DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD 274 (289)
T ss_pred HhhCcc-----ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC
Confidence 433332 67799999999999999999999999999999887643
No 238
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.52 E-value=0.00061 Score=62.67 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC--CCCCcEEeecCcC
Q 020013 101 ELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG--DRDIPIIAAGGIV 176 (332)
Q Consensus 101 ~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~--~~~iPviaaGGI~ 176 (332)
+.++.+++. ..+|...+.|.++++++.++|+|.|.++++ . ...+.++++.++ ..++.+-++|||
T Consensus 178 ~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~-------~----~e~l~~av~~~~~~~~~~~leaSGGI- 245 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF-------S----PQQATEIAQIAPSLAPHCTLSLAGGI- 245 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC-------C----HHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 445555553 467889999999999999999999999654 1 233444444332 126789999999
Q ss_pred CHHHHHHHHHcCcceeeeccc
Q 020013 177 DARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~ 197 (332)
|.+++.++...|+|.+.+|.-
T Consensus 246 ~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred CHHHHHHHHhcCCCEEEECcc
Confidence 999999999999999988875
No 239
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.50 E-value=0.00047 Score=62.86 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.++...+.|+|.+.+.--++-|. +....+.++.++.+.. ++||++.|||.+.+++.+++.+|+++|.+||..+
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~--~~~~n~~~i~~i~~~~---~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKR--GSEPNYELIENLASEC---FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcC--CCcccHHHHHHHHHhC---CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 3456667788999998865543332 1123477888888876 7999999999999999999999999999999877
Q ss_pred cCccCCCCHHHHHHHhcC
Q 020013 200 ASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~ 217 (332)
..+ ...++.+...
T Consensus 108 ~~~-----~~~~~~~~~~ 120 (258)
T PRK01033 108 EDP-----DLITEAAERF 120 (258)
T ss_pred cCH-----HHHHHHHHHh
Confidence 553 3445544443
No 240
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.48 E-value=0.00045 Score=62.04 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCH-HHHHHHHH-cCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 118 GSF-DEARKAVN-AGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 118 ~s~-~~a~~a~~-~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
.++ +.|+...+ .|+|.+.+---++ .||. ..+.++.++.+.+ ++||.+.|||.+.+++.+++.+||+-|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~----~n~~~I~~i~~~~---~~pi~vGGGIrs~e~v~~~l~~Ga~kvv 103 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHA----REFDYIKSLRRLT---TKDIEVGGGIRTKSQIMDYFAAGINYCI 103 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCc----chHHHHHHHHhhc---CCeEEEcCCcCCHHHHHHHHHCCCCEEE
Confidence 354 55566666 5899888743322 1332 3477888888766 7999999999999999999999999999
Q ss_pred eccccccCccCCCCHHHHHHHhcCC
Q 020013 194 LGTRFVASEESYAHPEYKRKLVEMD 218 (332)
Q Consensus 194 ~GT~fl~t~Es~~~~~~k~~~~~~~ 218 (332)
+||..+..+| ..++...+-.
T Consensus 104 igt~a~~~~~-----~l~~~~~~fg 123 (234)
T PRK13587 104 VGTKGIQDTD-----WLKEMAHTFP 123 (234)
T ss_pred ECchHhcCHH-----HHHHHHHHcC
Confidence 9999886643 4555544443
No 241
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.47 E-value=0.00077 Score=61.81 Aligned_cols=87 Identities=22% Similarity=0.272 Sum_probs=66.7
Q ss_pred HHHHHHHHhC---CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 100 EELVLEAHSA---GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 100 ~~~i~~~~~~---g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+.++++++. ..+|...|.|.+++..+.++|+|.|.++++ . ..-+.+.++.++. ...+.++|||
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~-------s----~e~l~~av~~~~~-~~~leaSGgI- 246 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF-------S----LDDLREGVELVDG-RAIVEASGNV- 246 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC-------C----HHHHHHHHHHhCC-CeEEEEECCC-
Confidence 3455555553 367889999999999999999999999765 1 2233444444432 4689999999
Q ss_pred CHHHHHHHHHcCcceeeeccccc
Q 020013 177 DARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl 199 (332)
|.+++.++...|+|.+.+|+-.-
T Consensus 247 ~~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 247 NLNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred CHHHHHHHHhcCCCEEEeCcccc
Confidence 99999999999999999998543
No 242
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.0074 Score=54.43 Aligned_cols=175 Identities=23% Similarity=0.350 Sum_probs=102.6
Q ss_pred CccceecC-CCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCC-----CC----HH
Q 020013 9 FEYGIVQA-PLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAF-----PH----NE 78 (332)
Q Consensus 9 ~~~Pii~a-pM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~-----~~----~~ 78 (332)
.++-|-.+ |.. +..+|+-..+..-.|+...+.. ++-.++..-.... .+.|+-+.+.... +. ..
T Consensus 29 ~DhGv~~g~p~~-gl~d~e~~v~~v~~~g~dav~~----~~G~~~~~~~~y~--~dvplivkl~~~t~l~~~~~~~~~~~ 101 (265)
T COG1830 29 MDHGVEHGNPIE-GLEDPENIVAKVAEAGADAVAM----TPGIARSVHRGYA--HDVPLIVKLNGSTSLSPDPNDQVLVA 101 (265)
T ss_pred cccccccCCCcc-cccCHHHHHHHHHhcCCCEEEe----cHhHHhhcCcccc--CCcCEEEEeccccccCCCcccceeee
Confidence 34555555 664 5777776655555555555543 2222211111111 1566666544321 11 12
Q ss_pred HHHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEec------------CCHH----HHHHHHHcCCC
Q 020013 79 NIKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQV------------GSFD----EARKAVNAGVD 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v------------~s~~----~a~~a~~~g~D 132 (332)
.++.+...++|+|..+ +|.+.+ ++++.+++.|++++..+ .+.+ .++.+.+.|+|
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGAD 181 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGAD 181 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCC
Confidence 3677788899988654 565433 23345567899877532 1222 23457789999
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-H-----HHHHHHHHcCcceeeeccccccCcc
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-A-----RGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~-----~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+|.+.=+ + ...-++++.+.. .+||+.+||=.+ . +-+.+++..||.|+.+|.-++..+.
T Consensus 182 IiK~~yt-------g---~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 182 IIKTKYT-------G---DPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred eEeecCC-------C---ChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence 9987321 1 124456677666 699999999876 1 2345677899999999988776644
No 243
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.47 E-value=0.00071 Score=62.39 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=66.2
Q ss_pred HHHHHHHHhC--CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 100 EELVLEAHSA--GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 100 ~~~i~~~~~~--g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
.+.++++++. ..++...|.|.+++..+.++|+|+|.++++. ..-++++++..+. ++.+-++||| |
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~sleea~ea~~~gaDiI~LDn~s-----------~e~~~~av~~~~~-~~~ieaSGGI-~ 262 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDNFT-----------TEQMREAVKRTNG-RALLEVSGNV-T 262 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEeCCCC-----------hHHHHHHHHhhcC-CeEEEEECCC-C
Confidence 3445555543 4678899999999999999999999997651 1333444444432 6889999999 9
Q ss_pred HHHHHHHHHcCcceeeecccc
Q 020013 178 ARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~~GT~f 198 (332)
.+++.++...|+|.+.+|+-.
T Consensus 263 ~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 263 LETLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHHHhcCCCEEEeCccc
Confidence 999999999999999999854
No 244
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.46 E-value=0.0023 Score=67.26 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=79.0
Q ss_pred HHHHhcCCcEEEEccC---------CC-------------------cHHHHHHHHhC---CCEEEEecC---------CH
Q 020013 81 KAILSEKVAVLQVSWG---------EY-------------------SEELVLEAHSA---GVKVVPQVG---------SF 120 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g---------~~-------------------~~~~i~~~~~~---g~~v~~~v~---------s~ 120 (332)
+.+.++|.|.|.+|.+ ++ +.++++.+++. +.+|...++ +.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence 3456789999999855 21 12455566653 455665443 23
Q ss_pred HH----HHHHHHcCCCEEEEec-CCCC-ccc-CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-ccee
Q 020013 121 DE----ARKAVNAGVDAIIVQG-REAG-GHV-IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGI 192 (332)
Q Consensus 121 ~~----a~~a~~~g~D~ivv~G-~eaG-Gh~-~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV 192 (332)
++ ++.+.+.|+|+|-+.+ .... -+. .+......+..++++.+ ++||++.|+|.+++++.++++.| ||.|
T Consensus 638 ~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pv~~~G~i~~~~~a~~~l~~g~~D~v 714 (765)
T PRK08255 638 DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA---GIATIAVGAISEADHVNSIIAAGRADLC 714 (765)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc---CCEEEEeCCCCCHHHHHHHHHcCCccee
Confidence 33 3456678999999853 1100 000 00011123445677766 79999999999999999999866 9999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
.+|..|+..++
T Consensus 715 ~~gR~~l~dP~ 725 (765)
T PRK08255 715 ALARPHLADPA 725 (765)
T ss_pred eEcHHHHhCcc
Confidence 99999998875
No 245
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.42 E-value=0.0097 Score=53.79 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc---CCC-
Q 020013 25 PELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---GEY- 98 (332)
Q Consensus 25 ~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---g~~- 98 (332)
.++|..-.++|. +=++-.+. .+. +.++++.+.++.|+-+.=-+. .+.++.+++.|++.|.++- ..+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg~-~n~----~~i~~i~~~~~~~v~vGGGIr---~e~v~~~l~aGa~rVvIGS~av~~~~ 112 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLGP-NND----DAAKEALHAYPGGLQVGGGIN---DTNAQEWLDEGASHVIVTSWLFTKGK 112 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECCC-CcH----HHHHHHHHhCCCCEEEeCCcC---HHHHHHHHHcCCCEEEECcHHHhCCC
Confidence 367888878775 44443321 233 344555444555665432222 3778889999999998862 111
Q ss_pred -cHHHHHHHH-hCC---C--------------EEEE----ecC--CHH-H-HHHHHHcCCCEEEEecCCCCcccCCCCch
Q 020013 99 -SEELVLEAH-SAG---V--------------KVVP----QVG--SFD-E-ARKAVNAGVDAIIVQGREAGGHVIGQDGL 151 (332)
Q Consensus 99 -~~~~i~~~~-~~g---~--------------~v~~----~v~--s~~-~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~ 151 (332)
.+++++.+. ..| + +|.. ..+ ++. + ++...+. +..|++...+--|...| ..
T Consensus 113 i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G--~d 189 (253)
T TIGR02129 113 FDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKG--ID 189 (253)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcccc--CC
Confidence 134444432 222 1 1111 001 232 3 3444555 99999876544443212 44
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHc--Ccceeeecccccc
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSL--GAQGICLGTRFVA 200 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~--GA~gV~~GT~fl~ 200 (332)
++++.++.+.. ++|||++|||++.+|+.++-.+ |..++++|.++..
T Consensus 190 lel~~~l~~~~---~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 190 EELVSKLGEWS---PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 78888888876 8999999999999999988554 6778999988654
No 246
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00066 Score=59.61 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
++.|+...+.|+|=+++-...+--. +....+..+.++.+.+ .+|+-..|||.+.+|+.+.|.+|||-|-+.|+-+
T Consensus 33 VelA~~Y~e~GADElvFlDItAs~~--gr~~~~~vv~r~A~~v---fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITASSE--GRETMLDVVERVAEQV---FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccccc--cchhHHHHHHHHHhhc---eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 4667777889999998755433221 3446688888888877 7999999999999999999999999999999988
Q ss_pred cCcc
Q 020013 200 ASEE 203 (332)
Q Consensus 200 ~t~E 203 (332)
..+|
T Consensus 108 ~~p~ 111 (256)
T COG0107 108 KDPE 111 (256)
T ss_pred cChH
Confidence 7766
No 247
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.39 E-value=0.0034 Score=55.06 Aligned_cols=100 Identities=25% Similarity=0.299 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|++++.+.+..+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+++++--+ ....
T Consensus 24 ~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~-----------~~~~ 92 (204)
T TIGR01182 24 PLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG-----------LTPE 92 (204)
T ss_pred HHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC-----------CCHH
Confidence 446677888999999876442 23567777653 34444 568899999999999999996421 1123
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++....+ .++|++. |+.|+.++..++.+||+.|-+
T Consensus 93 v~~~~~~----~~i~~iP--G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 93 LAKHAQD----HGIPIIP--GVATPSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHH----cCCcEEC--CCCCHHHHHHHHHCCCCEEEE
Confidence 3333332 2788888 888999999999999998764
No 248
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.39 E-value=0.0007 Score=60.49 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+.++...+.|+|.+.+---++ .|+ ...+.++.++.+.. ++|++..|||.+.+++..++.+||+.|++||.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~----~~~~~~i~~i~~~~---~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGG----PVNLPVIKKIVRET---GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCC----CCcHHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 3455666678999888732221 122 13367788888776 79999999999999999999999999999999
Q ss_pred cccCccCCCCHHHHHHHhcCC
Q 020013 198 FVASEESYAHPEYKRKLVEMD 218 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~ 218 (332)
.+..+ +.+++...+..
T Consensus 104 ~l~d~-----~~~~~~~~~~g 119 (230)
T TIGR00007 104 AVENP-----DLVKELLKEYG 119 (230)
T ss_pred HhhCH-----HHHHHHHHHhC
Confidence 88542 45666655543
No 249
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.38 E-value=0.0018 Score=61.88 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHcCCCEEEEec-CCCCccc-----CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeecc
Q 020013 124 RKAVNAGVDAIIVQG-REAGGHV-----IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGT 196 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G-~eaGGh~-----~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT 196 (332)
+.+++.|+|+|-+.. ....-.. .+......+..++++.+ ++||++.|+|.+++++.++++.| +|.|++|.
T Consensus 231 ~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR 307 (353)
T cd02930 231 KALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV---DIPVIASNRINTPEVAERLLADGDADMVSMAR 307 (353)
T ss_pred HHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC---CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhH
Confidence 445678999998842 1100000 00001233456777766 79999999999999999999976 99999999
Q ss_pred ccccCcc
Q 020013 197 RFVASEE 203 (332)
Q Consensus 197 ~fl~t~E 203 (332)
.++..++
T Consensus 308 ~~l~dP~ 314 (353)
T cd02930 308 PFLADPD 314 (353)
T ss_pred HHHHCcc
Confidence 9998764
No 250
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.35 E-value=0.018 Score=53.09 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH--------HHHHHHHhCCCEEE---E
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE--------ELVLEAHSAGVKVV---P 115 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~--------~~i~~~~~~g~~v~---~ 115 (332)
..+.+...+..+.+..+.|+.+++=-- .+.+.+..+++.|.+.|-+.....|. ++++.++..|+.|= .
T Consensus 58 g~~~~~~~~~~~A~~~~vPV~lHLDH~-~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG 136 (283)
T PRK07998 58 GYDYIYEIVKRHADKMDVPVSLHLDHG-KTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELG 136 (283)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECcCC-CCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 344555555555555567877775322 23567778888999988775333232 34556667787651 1
Q ss_pred e--------------cCCHHHHHHHH-HcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-
Q 020013 116 Q--------------VGSFDEARKAV-NAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA- 178 (332)
Q Consensus 116 ~--------------v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~- 178 (332)
. .++++++.+.. +.|+|.+-+ .|.-=|-.. ++.-.+.++.++.+.+ ++|++.-||=+.+
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~-~p~l~~~~l~~I~~~~---~vPLVlHGgSG~~~ 212 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLED-IPRIDIPLLKRIAEVS---PVPLVIHGGSGIPP 212 (283)
T ss_pred cCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCC-CCCcCHHHHHHHHhhC---CCCEEEeCCCCCCH
Confidence 1 35788887765 579998876 233111111 2223478899998887 7999998876665
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.+++.+|...|-++|.+..+
T Consensus 213 e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 213 EILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred HHHHHHHHcCCcEEEECHHHHHH
Confidence 77899999999999999986543
No 251
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.34 E-value=0.0021 Score=58.52 Aligned_cols=169 Identities=20% Similarity=0.204 Sum_probs=98.8
Q ss_pred CccceecCCCCCCCCcH-HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC-----CCC----HH
Q 020013 9 FEYGIVQAPLGPDISGP-ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA-----FPH----NE 78 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~-~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~-----~~~----~~ 78 (332)
+++-+..+|+. |+.++ +....+.. | ...+.. +...++.. .....+.|+-+.+-.. .+. ..
T Consensus 29 ~DHG~~~Gp~~-gl~~~~~~~~~i~~-~-~da~~~----~~G~~~~~---~~~~~~~~lil~ls~~t~~~~~~~~~~l~~ 98 (264)
T PRK08227 29 FDHGYFQGPTT-GLERIDINIAPLFP-Y-ADVLMC----TRGILRSV---VPPATNKPVVLRASGGNSILKELSNEAVAV 98 (264)
T ss_pred CCCccccCCCc-cccChHHHHHHHhh-c-CCEEEe----ChhHHHhc---ccccCCCcEEEEEcCCCCCCCCCCccccee
Confidence 56777788886 56543 34444544 4 333322 22222221 1112344555443321 111 12
Q ss_pred HHHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEecC------CHH-----HHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQVG------SFD-----EARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v~------s~~-----~a~~a~~~g~D~ivv~ 137 (332)
.++.++..|+|.|.++ .|.+.+ ++++.+++.|++++.... +.. .++.+.+.|+|+|.+.
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 3677889999998765 454221 234556778999876321 211 2456788999999873
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-H----HHHHHHHcCcceeeeccccccCc
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-R----GYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~----~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
-+ . ..+.++.+.. .+||+.+||=... + .+..++..||.||.+|.-.+-.+
T Consensus 179 y~----------~--~~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~ 233 (264)
T PRK08227 179 YV----------E--EGFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSE 233 (264)
T ss_pred CC----------H--HHHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccC
Confidence 21 1 3455666655 7999999998642 2 24567789999999998877763
No 252
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.34 E-value=0.016 Score=55.41 Aligned_cols=78 Identities=29% Similarity=0.433 Sum_probs=53.6
Q ss_pred HHHHHHcC-CCEEEEecCCC--CcccCCCC--chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeecc
Q 020013 123 ARKAVNAG-VDAIIVQGREA--GGHVIGQD--GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGT 196 (332)
Q Consensus 123 a~~a~~~g-~D~ivv~G~ea--GGh~~~~~--~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT 196 (332)
++...+.| +|+|-+.+... .+...... ....+...++... .+|+|++|+|.+++.+.++++-| ||-|.||+
T Consensus 243 a~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~---~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR 319 (363)
T COG1902 243 AKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV---RIPVIAVGGINDPEQAEEILASGRADLVAMGR 319 (363)
T ss_pred HHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCCCEEEech
Confidence 34456789 79998855321 22110010 1122333455555 69999999999999999999998 99999999
Q ss_pred ccccCcc
Q 020013 197 RFVASEE 203 (332)
Q Consensus 197 ~fl~t~E 203 (332)
.|+..++
T Consensus 320 ~~ladP~ 326 (363)
T COG1902 320 PFLADPD 326 (363)
T ss_pred hhhcCcc
Confidence 9997644
No 253
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.33 E-value=0.026 Score=49.48 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=63.9
Q ss_pred HHHHHHhcCCcEEEEc--cCC----CcHHHH---HHHHh--CCCEE--EEecC--CHHH----HHHHHHcCCCEEEE-ec
Q 020013 79 NIKAILSEKVAVLQVS--WGE----YSEELV---LEAHS--AGVKV--VPQVG--SFDE----ARKAVNAGVDAIIV-QG 138 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~----~~~~~i---~~~~~--~g~~v--~~~v~--s~~~----a~~a~~~g~D~ivv-~G 138 (332)
.++.+++.|+|.|.+. +|. ....+. ..+.+ .|+++ +.... +.++ ++.+.++|+|+|.. .|
T Consensus 74 eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG 153 (203)
T cd00959 74 EAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTG 153 (203)
T ss_pred HHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 3667788899998764 231 112222 22222 24443 33322 3333 34567899999988 34
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCccee
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV 192 (332)
+..+| .+..-+..+.+.++ .++||.++|||.|.+++.+++.+||+-+
T Consensus 154 ~~~~~------at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 154 FGPGG------ATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCCCC------CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 43222 22333333333332 2699999999999999999999998754
No 254
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.30 E-value=0.078 Score=47.90 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=103.8
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC---CCceeecCCCCC-----------CHHHHHHHHHHHHhhcCCcEEEEeecCCCCH
Q 020013 12 GIVQAPLGPDISGPELVAAVANA---GGLGLLRAPDWE-----------APDYLRDLIRKTRSLTERPFGVGVVLAFPHN 77 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a---GglG~i~~~~~~-----------~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~ 77 (332)
-+|.||-. +-+.+.+..+++. -|+.++..+.|. ..+. .+++.+.++.++.|+-.-++ +.
T Consensus 17 ~~iaGPC~--vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~g-l~~L~~~~~~~Gl~~~Tev~----d~ 89 (250)
T PRK13397 17 NFIVGPCS--IESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQG-IRYLHEVCQEFGLLSVSEIM----SE 89 (250)
T ss_pred cEEeccCc--cCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHH-HHHHHHHHHHcCCCEEEeeC----CH
Confidence 35556664 6676666555532 245666443221 1232 34455555555666655444 35
Q ss_pred HHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH----HcCC-CEEEEe-cCCCCcccCC
Q 020013 78 ENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV----NAGV-DAIIVQ-GREAGGHVIG 147 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~----~~g~-D~ivv~-G~eaGGh~~~ 147 (332)
..++.+.+ .+|++++.... ...++++.+-+.|.+|+.+-+ +++|...+. +.|. +.++++ |.. +....
T Consensus 90 ~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~--~Y~~~ 166 (250)
T PRK13397 90 RQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVR--GYDVE 166 (250)
T ss_pred HHHHHHHh-cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccC--CCCCc
Confidence 67888777 59999997443 234678888788999987654 677665543 4566 566666 541 11101
Q ss_pred -C-CchhhhHHHHHHHhCCCCCcEEee----cCcCC--HHHHHHHHHcCcceeeeccc
Q 020013 148 -Q-DGLISLLPMVVDLIGDRDIPIIAA----GGIVD--ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 148 -~-~~~~~ll~~i~~~~~~~~iPviaa----GGI~~--~~~v~~al~~GA~gV~~GT~ 197 (332)
. ...+..++.+++.. ++||+.. +|..+ ..-..+++++||||+++=+.
T Consensus 167 ~~n~~dl~ai~~lk~~~---~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 167 TRNMLDIMAVPIIQQKT---DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred cccccCHHHHHHHHHHh---CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 1 23456677777665 7999885 44322 13356788999999998544
No 255
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.29 E-value=0.0049 Score=58.92 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=75.4
Q ss_pred HHHhcCCcEEEEccCC---------C-------------------cHHHHHHHHhC-C--CEEEEecC------------
Q 020013 82 AILSEKVAVLQVSWGE---------Y-------------------SEELVLEAHSA-G--VKVVPQVG------------ 118 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~---------~-------------------~~~~i~~~~~~-g--~~v~~~v~------------ 118 (332)
.+.++|.|.|.+|.+. + ..++++.+++. | .+|...++
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g 231 (361)
T cd04747 152 DARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLA 231 (361)
T ss_pred HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCC
Confidence 4566899999988433 1 12456666663 3 45554332
Q ss_pred -CHHHHH----HHHHcCCCEEEEecCCCCcccCC--CCchhhhHHHHHHHhCCCCCcEEeecCc----------------
Q 020013 119 -SFDEAR----KAVNAGVDAIIVQGREAGGHVIG--QDGLISLLPMVVDLIGDRDIPIIAAGGI---------------- 175 (332)
Q Consensus 119 -s~~~a~----~a~~~g~D~ivv~G~eaGGh~~~--~~~~~~ll~~i~~~~~~~~iPviaaGGI---------------- 175 (332)
+.++.. .+.+.|+|+|=+... ++... ....+.+...+++.+ ++||++.|||
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g---~~~~~~~~~~~~~~~~~~k~~~---~~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTR---RFWEPEFEGSELNLAGWTKKLT---GLPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC---CccCCCcCccchhHHHHHHHHc---CCCEEEECCccccccccccccccccc
Confidence 333433 346789999866431 11100 111244556677766 7999999999
Q ss_pred --CCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 176 --VDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 176 --~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
.+++++.++++-| ||.|.+|+.++..++
T Consensus 306 ~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 336 (361)
T cd04747 306 SPASLDRLLERLERGEFDLVAVGRALLSDPA 336 (361)
T ss_pred ccCCHHHHHHHHHCCCCCeehhhHHHHhCcH
Confidence 5889999999976 999999999997653
No 256
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.26 E-value=0.0045 Score=54.60 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=93.0
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCCCC-CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDW-EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~-~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
|=...+|-- .--..+.+.+++++|-=+++..++. .+.+.+.+.++++|+.++.|+-. +...+ .. +...+|
T Consensus 18 H~tliDP~k-~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvil--fP~~~--~~----is~~aD 88 (240)
T COG1646 18 HLTLIDPDK-TEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVIL--FPGSP--SG----ISPYAD 88 (240)
T ss_pred EEEEeCccc-ccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEE--ecCCh--hc----cCccCC
Confidence 334445543 1335678888989987666654322 45677889999999777777543 22111 11 112456
Q ss_pred EEEEcc---CCCcH-------HHHHHHHhCCCEEE-------------EecC-------CHHHHHHH-----HHcCCCEE
Q 020013 90 VLQVSW---GEYSE-------ELVLEAHSAGVKVV-------------PQVG-------SFDEARKA-----VNAGVDAI 134 (332)
Q Consensus 90 ~I~~~~---g~~~~-------~~i~~~~~~g~~v~-------------~~v~-------s~~~a~~a-----~~~g~D~i 134 (332)
.+.+.- ...+. +-...+.+.+..++ ..++ +.++...+ .-.|-..+
T Consensus 89 avff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~ 168 (240)
T COG1646 89 AVFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVV 168 (240)
T ss_pred eEEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEE
Confidence 554320 11111 11111111121111 0111 12222211 12466666
Q ss_pred EEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 135 IVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 135 vv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
-+ |+||.- +.......+.++.+ ..|+|..|||.+++.+.+...+|||.+++||.+--+.
T Consensus 169 Yl---Eagsga-~~Pv~~e~v~~v~~-----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 169 YL---EAGSGA-GDPVPVEMVSRVLS-----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred EE---EecCCC-CCCcCHHHHHHhhc-----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 66 444433 22222333333322 4699999999999999999999999999999865443
No 257
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.22 E-value=0.005 Score=57.65 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh---CCCEEEEecC-CHH---HHHHHHHcC--CCE
Q 020013 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS---AGVKVVPQVG-SFD---EARKAVNAG--VDA 133 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~---~g~~v~~~v~-s~~---~a~~a~~~g--~D~ 133 (332)
..||-+|=|...-+.+....+.+.|.-.+..-+ +++++.+.+++ .+..+...++ +.+ .+....++| +|+
T Consensus 34 ~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~--~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~ 111 (321)
T TIGR01306 34 KLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF--DEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEY 111 (321)
T ss_pred cCcEEeeccchhhhHHHHHHHHHcCCEEEEecC--CHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCE
Confidence 457777766432234445555566655444332 35555554444 3555555554 333 344556778 799
Q ss_pred EEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 134 IIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 134 ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
|+++-. =||. ...+..++.+++.. +.|.+..|.|.+++++..++.+|||+|.+|
T Consensus 112 i~~D~a--hg~s---~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 112 ITIDIA--HGHS---NSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred EEEeCc--cCch---HHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 999643 2453 34567788888766 578899999999999999999999999988
No 258
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.20 E-value=0.04 Score=48.63 Aligned_cols=108 Identities=26% Similarity=0.403 Sum_probs=64.5
Q ss_pred HHHHHHhcCCcEEEEc--cCC----CcHHH---HHHHHh--CCC--EEEEecC--CHHHH----HHHHHcCCCEEEE-ec
Q 020013 79 NIKAILSEKVAVLQVS--WGE----YSEEL---VLEAHS--AGV--KVVPQVG--SFDEA----RKAVNAGVDAIIV-QG 138 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~----~~~~~---i~~~~~--~g~--~v~~~v~--s~~~a----~~a~~~g~D~ivv-~G 138 (332)
..+.+++.|+|-|.+. +|. ....+ +..+.+ .|+ +++.... +.++. +.+.++|+|+|.. .|
T Consensus 75 E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 75 ETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred HHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 3556778899887653 221 11222 233333 144 4444332 33332 3467899999987 35
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+..+| .+..-+..+++.++. ++||-++|||.|.+++.+++.+||+-+-
T Consensus 155 f~~~g------at~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 155 FGAGG------ATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred CCCCC------CCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 53333 223333344444432 6999999999999999999999988553
No 259
>PRK06852 aldolase; Validated
Probab=97.18 E-value=0.021 Score=53.05 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=101.1
Q ss_pred CccceecCC--------CCCCCCcHH-HHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecC------
Q 020013 9 FEYGIVQAP--------LGPDISGPE-LVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLA------ 73 (332)
Q Consensus 9 ~~~Pii~ap--------M~~g~s~~~-la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~------ 73 (332)
+++-+..+| +. |..+|+ +...+.++| .+.+.. +...++... ....+.|+-+.+-..
T Consensus 38 ~DHG~~~Gp~~~~~~~~~~-gl~dp~~~i~~~~~~g-~dav~~----~~G~l~~~~---~~~~~~~lIlkl~~~t~l~~~ 108 (304)
T PRK06852 38 GDQKIEHLNDDFYGEGIAK-DDADPEHLFRIASKAK-IGVFAT----QLGLIARYG---MDYPDVPYLVKLNSKTNLVKT 108 (304)
T ss_pred ccCCcccCCcccccccCCc-ccCCHHHHHHHHHhcC-CCEEEe----CHHHHHhhc---cccCCCcEEEEECCCCCcCCc
Confidence 566677777 76 688887 555555554 555433 122222211 112245555443221
Q ss_pred ---CCCH---HHHHHHHhcC------CcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEec-------C---CHH
Q 020013 74 ---FPHN---ENIKAILSEK------VAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQV-------G---SFD 121 (332)
Q Consensus 74 ---~~~~---~~~~~~~~~~------~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v-------~---s~~ 121 (332)
++.. ..++.++..| +|.|.++ .|...+ ++++.+++.|++++..+ . +++
T Consensus 109 ~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~ 188 (304)
T PRK06852 109 SQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPH 188 (304)
T ss_pred ccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHH
Confidence 1111 1256777777 7787654 454222 23455677899987532 1 112
Q ss_pred ----HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-H----HHHHHHH-cCcce
Q 020013 122 ----EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-R----GYVAALS-LGAQG 191 (332)
Q Consensus 122 ----~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~----~v~~al~-~GA~g 191 (332)
.++.+.+.|+|+|.+.-+.. |.. .....+.++.+... .+||+.+||=... + .+.+++. .||.|
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~--~~~---g~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~G 261 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKK--EGA---NPAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASG 261 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCc--CCC---CCHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCce
Confidence 24567889999999854311 110 11344556666542 5899999998742 2 2456677 89999
Q ss_pred eeeccccccCc
Q 020013 192 ICLGTRFVASE 202 (332)
Q Consensus 192 V~~GT~fl~t~ 202 (332)
+.+|.-.+-.+
T Consensus 262 v~~GRNIfQ~~ 272 (304)
T PRK06852 262 NATGRNIHQKP 272 (304)
T ss_pred eeechhhhcCC
Confidence 99998776653
No 260
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.16 E-value=0.0042 Score=56.12 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+...+.|++.+=+.-- | .. ...++.++.+.+ ++||...|||.+ +++.+++.+||+.|.+||..+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL---g----~~-n~~~i~~i~~~~---~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av 108 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML---G----PN-NDDAAKEALHAY---PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLF 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC---C----CC-cHHHHHHHHHhC---CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHH
Confidence 56777778888887755332 1 12 467788888876 799999999976 999999999999999999987
Q ss_pred cCccCCCCHHHHHHHhcC
Q 020013 200 ASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 200 ~t~Es~~~~~~k~~~~~~ 217 (332)
..+ .-.++.+++...+-
T Consensus 109 ~~~-~i~~~~~~~i~~~f 125 (253)
T TIGR02129 109 TKG-KFDLKRLKEIVSLV 125 (253)
T ss_pred hCC-CCCHHHHHHHHHHh
Confidence 643 22244555555543
No 261
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.15 E-value=0.0024 Score=57.33 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.+.|+...+.|+|.+.+---++ -||. ..+.++.++.+.+ .+|+.+.|||.+.+++.+++.+||+-|++||..
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~~~~----~n~~~i~~i~~~~---~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIMGRG----DNDEAIRELAAAW---PLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccccCCC----ccHHHHHHHHHhC---CCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 4556667778999888743321 1332 3467788888766 689999999999999999999999999999997
Q ss_pred ccCccCCCCHHHHHHHhcCCC
Q 020013 199 VASEESYAHPEYKRKLVEMDK 219 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~~~ 219 (332)
+.. | ..++.+.+-.+
T Consensus 111 ~~~-~-----~~~~~~~~~~~ 125 (233)
T cd04723 111 LPS-D-----DDEDRLAALGE 125 (233)
T ss_pred ccc-h-----HHHHHHHhcCC
Confidence 754 3 34444444433
No 262
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.15 E-value=0.0016 Score=57.86 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=91.9
Q ss_pred CcchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHH
Q 020013 1 MGWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 1 ~~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~ 80 (332)
|+|.++=+ -+=+..+|=- ....+....+.+.|.=.++..++ ..-..+.+.+..+++.++.|+-. +.... ..+
T Consensus 1 ~~~~~~~~-~h~~liDPdK--~~~~~~~~~~~~~gtDai~VGGS-~~~~~~d~vv~~ik~~~~lPvil--fPg~~--~~v 72 (230)
T PF01884_consen 1 YDIREWRK-LHATLIDPDK--PNPEEALEAACESGTDAIIVGGS-DTGVTLDNVVALIKRVTDLPVIL--FPGSP--SQV 72 (230)
T ss_dssp SGGGG-----EEEEE-TTS--S-HHHHHHHHHCTT-SEEEEE-S-THCHHHHHHHHHHHHHSSS-EEE--ETSTC--CG-
T ss_pred Cccccccc-ceEEEECCCC--CCcHHHHHHHHhcCCCEEEECCC-CCccchHHHHHHHHhcCCCCEEE--eCCCh--hhc
Confidence 45555544 3555667853 44455555666777655554433 21234566677777777888543 32221 122
Q ss_pred HHHHhcCCcEEEEc---cCCCcHH-------HHHHHHhCCCEEEEe-------------c-------CCHHHHHH-----
Q 020013 81 KAILSEKVAVLQVS---WGEYSEE-------LVLEAHSAGVKVVPQ-------------V-------GSFDEARK----- 125 (332)
Q Consensus 81 ~~~~~~~~~~I~~~---~g~~~~~-------~i~~~~~~g~~v~~~-------------v-------~s~~~a~~----- 125 (332)
..++|.+.+. -+..|.- .+..+++.+..+++. + .+..+...
T Consensus 73 ----s~~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA 148 (230)
T PF01884_consen 73 ----SPGADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALA 148 (230)
T ss_dssp -----TTSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHH
T ss_pred ----CcCCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHH
Confidence 2467777653 1222221 112223333333321 0 12222211
Q ss_pred HHHcCCCEEEEec-CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 126 AVNAGVDAIIVQG-REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 126 a~~~g~D~ivv~G-~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
..-.|-.+|-++. +.+- ++. -..+.++++.+. ++|+|..|||.+.+.+.+++.+|||.|++||.|--.
T Consensus 149 ~~~~g~~~iYLEaGSGa~----~~v--~~~v~~~~~~~~--~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 149 AEYLGMPIIYLEAGSGAY----GPV--PEEVIAAVKKLS--DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp HHHTT-SEEEEE--TTSS----S-H--HHHHHHHHHHSS--SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred HHHhCCCEEEEEeCCCCC----CCc--cHHHHHHHHhcC--CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 2235888888853 3111 221 144445555553 799999999999999999999999999999997543
No 263
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.11 E-value=0.011 Score=52.91 Aligned_cols=131 Identities=14% Similarity=0.212 Sum_probs=78.5
Q ss_pred HHHHHHhh-cCCcEEEEe--ecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhC------CCEEEEe-cCC--HH
Q 020013 54 LIRKTRSL-TERPFGVGV--VLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHSA------GVKVVPQ-VGS--FD 121 (332)
Q Consensus 54 ~i~~~r~~-~~~p~gvnl--~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~------g~~v~~~-v~s--~~ 121 (332)
.++.+++. ...++-+.+ +.+.+ ...++.+.+.|++.+.+|.. ...+.++.+.+. +..+... .++ .+
T Consensus 45 ~i~~l~~~~~~i~~D~Kl~Di~~t~-~~~i~~~~~~gad~itvH~~-ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~ 122 (230)
T PRK00230 45 FVRELKQRGFKVFLDLKLHDIPNTV-AKAVRALAKLGVDMVNVHAS-GGPRMMKAAREALEPKSRPLLIAVTVLTSMDEE 122 (230)
T ss_pred HHHHHHhcCCCEEEEeehhhccccH-HHHHHHHHHcCCCEEEEccc-CCHHHHHHHHHHhhccCCCeEEEEEECCCCCHH
Confidence 45566654 233444454 44333 45677788899999999953 345556555432 2233322 222 12
Q ss_pred HH-----------------HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH-----
Q 020013 122 EA-----------------RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----- 179 (332)
Q Consensus 122 ~a-----------------~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----- 179 (332)
++ +.+.+.|+|++++... .++.+++... +-.+..++||. ++
T Consensus 123 ~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~--------------~~~~ir~~~~--~~~~~v~pGI~-~~g~~~~ 185 (230)
T PRK00230 123 DLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ--------------EAAAIREATG--PDFLLVTPGIR-PAGSDAG 185 (230)
T ss_pred HHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH--------------HHHHHHhhcC--CceEEEcCCcC-CCCCCcc
Confidence 22 2345678888887322 1234444432 33557789994 44
Q ss_pred ------HHHHHHHcCcceeeeccccccCcc
Q 020013 180 ------GYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 180 ------~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
...+++..|||++++|+.+..++.
T Consensus 186 dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 186 DQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred hHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 588899999999999999987755
No 264
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.03 E-value=0.014 Score=56.12 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=42.5
Q ss_pred hhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 152 ISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 152 ~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
+.+..++++.+ ++||++.|||.+++++.++++.| ||.|.+|..|+..++
T Consensus 278 ~~~~~~ik~~~---~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~ 327 (370)
T cd02929 278 EPYIKFVKQVT---SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPF 327 (370)
T ss_pred HHHHHHHHHHC---CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCch
Confidence 45566777766 79999999999999999999987 999999999997754
No 265
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.03 E-value=0.099 Score=48.27 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=110.7
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C----CCC-CCHHHHHHHHHHHHhhcC--CcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A----PDW-EAPDYLRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~----~~~-~~~e~~~~~i~~~r~~~~--~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
.+.+.+.+.++-++- ..++|- . ..+ ...+.+...++.+.+... .|+.+++=-- .+.+.+..+++.|..
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg-~~~e~i~~ai~~Gft 102 (285)
T PRK07709 24 NMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHG-SSFEKCKEAIDAGFT 102 (285)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCC-CCHHHHHHHHHcCCC
Confidence 456777776666542 233331 1 012 344555555665544333 5777765322 235677788888988
Q ss_pred EEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCC
Q 020013 90 VLQVSWGEYS--------EELVLEAHSAGVKVVP-----------------QVGSFDEARKAVN-AGVDAIIV-QGREAG 142 (332)
Q Consensus 90 ~I~~~~g~~~--------~~~i~~~~~~g~~v~~-----------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaG 142 (332)
.|-+.....| .++++.++..|+.|=. ..+++++|+...+ .|+|.+-+ .|.-=|
T Consensus 103 SVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG 182 (285)
T PRK07709 103 SVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHG 182 (285)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccccc
Confidence 8877633323 2445566666765521 0368899988765 69999876 333212
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeecccccc
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~ 200 (332)
-..+.+.-.+.+|.++.+.+ ++|++.-||=+.+ +++.+++.+|..-|=++|.+..
T Consensus 183 ~Y~~~p~L~~~~L~~I~~~~---~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 183 PYKGEPNLGFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQI 238 (285)
T ss_pred CcCCCCccCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 11112334588899999887 7999988876665 7889999999999999998643
No 266
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.02 E-value=0.095 Score=48.18 Aligned_cols=176 Identities=20% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-CC----CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-AP----DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~~----~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-++. ..++|- .. .+...+.+...+..+.+....|+.+++=--. +.+.+..+++.|...|-
T Consensus 19 N~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~-~~~~i~~ai~~GftSVM 97 (276)
T cd00947 19 NINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGS-SFELIKRAIRAGFSSVM 97 (276)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHhCCCEEE
Confidence 355667776666542 234442 10 1334566666676666556778888753222 35677788899999888
Q ss_pred EccCCCcH--------HHHHHHHhCCCEEEE-----------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCCccc
Q 020013 93 VSWGEYSE--------ELVLEAHSAGVKVVP-----------------QVGSFDEARKAVN-AGVDAIIV-QGREAGGHV 145 (332)
Q Consensus 93 ~~~g~~~~--------~~i~~~~~~g~~v~~-----------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaGGh~ 145 (332)
+.....|. ++++.++..|+.|=. ..++++++....+ .|+|.+-+ .|.-=|...
T Consensus 98 iD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~ 177 (276)
T cd00947 98 IDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYK 177 (276)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccC
Confidence 76433332 345566777766521 1346888888765 59999986 233212221
Q ss_pred C-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeecccccc
Q 020013 146 I-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 146 ~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~ 200 (332)
. .+.-.+.++.++.+.+ ++|++.-||=+.+ +++.+++..|..-|=++|.+..
T Consensus 178 ~~~p~L~~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 178 GGEPKLDFDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred CCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 1 2334588999999988 7999988876666 6699999999999999998753
No 267
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.01 E-value=0.088 Score=48.55 Aligned_cols=177 Identities=18% Similarity=0.227 Sum_probs=113.9
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-+|- ..++|-. . .+...+.+...+..+.+..+.|+.+++=-. .+.+.+..+++.|...|-
T Consensus 22 N~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg-~~~e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 22 NIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHH-ESLDDIRQKVHAGVRSAM 100 (282)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCEEe
Confidence 356777777766552 2344421 0 133455566666666655677888775322 235778888999999887
Q ss_pred EccCCCcH--------HHHHHHHhCCCEEEE-------------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYSE--------ELVLEAHSAGVKVVP-------------------QVGSFDEARKAV-NAGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~~--------~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGG 143 (332)
+.....|. ++++.++..|+.|=. ..+++++|+... +.|+|.+-+ .|.-=|-
T Consensus 101 ~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 180 (282)
T TIGR01858 101 IDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL 180 (282)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccC
Confidence 76333332 345556666665421 135778888766 579999876 3432222
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.+|.++.+.+ ++|++.-||=+. .+++.+++.+|..-|=++|.+..+
T Consensus 181 yk~~p~Ldf~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 236 (282)
T TIGR01858 181 YKKTPKLDFDRLAEIREVV---DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIA 236 (282)
T ss_pred cCCCCccCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 2212334589999999988 799998776444 467889999999999999987644
No 268
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.01 E-value=0.091 Score=48.50 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+++.++-+|. ..++|-. . .|...+.+...+..+.+..+.|+.+++=-. .+.+.+..+++.|...|-
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~-~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 24 NIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHH-EDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHcCCCeEE
Confidence 355666666665542 2333311 0 123445555555555555567877775322 235678888888988887
Q ss_pred EccCCCcH--------HHHHHHHhCCCEEEE-------------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYSE--------ELVLEAHSAGVKVVP-------------------QVGSFDEARKAV-NAGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~~--------~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGG 143 (332)
+.....|. ++++.++..|+.|=. ..+++++|+... +.|+|.+-+ .|.-=|-
T Consensus 103 iDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK12737 103 IDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGL 182 (284)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccc
Confidence 75333222 445566666665521 135788888866 479999876 3432222
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeecccccc
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
....+.-.+.++.++.+.+ ++|++.-||=+. .+++.+++.+|..-|=++|.+..
T Consensus 183 y~~~p~Ld~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 183 YKGEPKLDFERLAEIREKV---SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred cCCCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence 2212334588899999988 799998775443 46688999999999999998653
No 269
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.00 E-value=0.098 Score=48.42 Aligned_cols=176 Identities=17% Similarity=0.224 Sum_probs=111.7
Q ss_pred CCcHHHHHHHHhCC---CceeecC--C---CC-CCHHHHHHHHHHHHhhc--CCcEEEEeecCCCCHHHHHHHHhcCCcE
Q 020013 22 ISGPELVAAVANAG---GLGLLRA--P---DW-EAPDYLRDLIRKTRSLT--ERPFGVGVVLAFPHNENIKAILSEKVAV 90 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~~--~---~~-~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~~~~~~~~ 90 (332)
+.+.+.+.++-+|. ..++|-. . .+ ..++.+...+....+.. +.|+.+++=-- .+.+.+..+++.|...
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg-~~~e~i~~ai~~GftS 103 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHG-ASEEDCAQAVKAGFSS 103 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCC-CCHHHHHHHHHcCCCE
Confidence 45666666665542 2333311 0 12 34555666666555544 56777664322 2357778888888888
Q ss_pred EEEccCCCc--------HHHHHHHHhCCCEEEEe-------------------cCCHHHHHHHHH-cCCCEEEE-ecCCC
Q 020013 91 LQVSWGEYS--------EELVLEAHSAGVKVVPQ-------------------VGSFDEARKAVN-AGVDAIIV-QGREA 141 (332)
Q Consensus 91 I~~~~g~~~--------~~~i~~~~~~g~~v~~~-------------------v~s~~~a~~a~~-~g~D~ivv-~G~ea 141 (332)
|-+.....| .++++..+..|+.|=.. .+++++++...+ .|+|.+-+ .|.-=
T Consensus 104 VMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H 183 (288)
T TIGR00167 104 VMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVH 183 (288)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccc
Confidence 877533322 23455566666655211 346788888765 69999987 34322
Q ss_pred CcccCCCC-chhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 142 GGHVIGQD-GLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 142 GGh~~~~~-~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
|.....+. -.+.++.++.+.+ ++|++.-||=+.+ +++.+++..|..-|=++|.+...
T Consensus 184 G~y~~~p~~Ld~~~L~~I~~~v---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 242 (288)
T TIGR00167 184 GVYKGEPKGLDFERLEEIQKYV---NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIA 242 (288)
T ss_pred cccCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHH
Confidence 32222233 4688999999988 7999998877666 68999999999999999986543
No 270
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.98 E-value=0.02 Score=50.68 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC-----CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCc
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA-----GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDG 150 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~-----g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~ 150 (332)
...+.+.+.|+.++.+.+..+ ..+.++.+++. ++.+. .+|.+.++++.+.++|+++++--+ .
T Consensus 29 ~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~-----------~ 97 (213)
T PRK06552 29 KISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS-----------F 97 (213)
T ss_pred HHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC-----------C
Confidence 345677888999999886542 23567777642 23343 568899999999999999998521 1
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
...++....+ .++|++. |+.|+.++.+++.+|+|-|.+
T Consensus 98 ~~~v~~~~~~----~~i~~iP--G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 98 NRETAKICNL----YQIPYLP--GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CHHHHHHHHH----cCCCEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 1233333222 2788876 888999999999999999996
No 271
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.96 E-value=0.0012 Score=59.06 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=57.0
Q ss_pred CCH-HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 118 GSF-DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 118 ~s~-~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.++ +.|+...+.|+|.+.+---++- . .+....+.++.++.+.. .+|+.+.|||.+.+++.+++.+||+.|++||
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa-~-~g~~~n~~~i~~i~~~~---~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAA-K-EGRGSNLELIKEIAKET---GIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHH-C-CTHHHHHHHHHHHHHHS---SSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCc-c-cCchhHHHHHHHHHhcC---CccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 344 4455566788998876322110 0 02224577888888876 6999999999999999999999999999999
Q ss_pred ccccCcc
Q 020013 197 RFVASEE 203 (332)
Q Consensus 197 ~fl~t~E 203 (332)
..+..+|
T Consensus 104 ~~~~~~~ 110 (229)
T PF00977_consen 104 EALEDPE 110 (229)
T ss_dssp HHHHCCH
T ss_pred HHhhchh
Confidence 9887654
No 272
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.96 E-value=0.11 Score=47.90 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.++-++. ..++|-. . .|...+.+...+..+.+..+.|+.+++=--. +.+.+..+++.|...|-
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~-~~e~i~~Ai~~GftSVM 102 (284)
T PRK09195 24 NIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHE-KFDDIAQKVRSGVRSVM 102 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCEEE
Confidence 355666666665542 2333311 0 1234455555566555555678777653222 35678888888988887
Q ss_pred EccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN-AGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaGG 143 (332)
+.....| .++++.++..|+.|=. ..+++++++...+ .|+|.+-+ .|.-=|-
T Consensus 103 ~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 182 (284)
T PRK09195 103 IDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM 182 (284)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 7633322 2345556666665421 1357888888765 69999876 3432222
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.++.++.+.+ ++|++.-||=+. .+++.+++..|..-|=++|.+...
T Consensus 183 y~~~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 238 (284)
T PRK09195 183 YKGEPKLDFDRLENIRQWV---NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIA 238 (284)
T ss_pred cCCCCcCCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 2212334588999999988 799997775433 477889999999999999987643
No 273
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=96.95 E-value=0.015 Score=50.78 Aligned_cols=189 Identities=23% Similarity=0.315 Sum_probs=108.1
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC---CCCC-----CH----------HHHHHHHHHH---Hh
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA---PDWE-----AP----------DYLRDLIRKT---RS 60 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~---~~~~-----~~----------e~~~~~i~~~---r~ 60 (332)
+|...++-..||+.+..+ -.+++...++|++.+|.. ++|. +. +.+.+..++. ..
T Consensus 12 ~~r~ti~~~s~iig~~~g-----TglsAkaeeagg~d~i~~~nsgr~r~ag~~Sl~gLLa~~naN~~vld~a~e~lp~~r 86 (276)
T COG5564 12 SFRYTIHKGSPIIGGGAG-----TGLSAKAEEAGGIDLIYIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVLPVVR 86 (276)
T ss_pred HHHHhhcCCCcccccccc-----cchhhhhhhcCCceEEEEecCccccccccchhhhhhhccCccHHHHHHHHhhCCccc
Confidence 455666667899954432 245666778899888843 2221 11 1111221111 01
Q ss_pred hcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEE------EccCCC-------------cHHHHHHHHhCCCEEEEecC
Q 020013 61 LTERPFGVGVVLAFPH---NENIKAILSEKVAVLQ------VSWGEY-------------SEELVLEAHSAGVKVVPQVG 118 (332)
Q Consensus 61 ~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~------~~~g~~-------------~~~~i~~~~~~g~~v~~~v~ 118 (332)
.+..-+|||- .+|. .+.++.+.+.+...|+ +--|.. .-++++..++.+....+.|.
T Consensus 87 ~tpv~aGv~~--~DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~ 164 (276)
T COG5564 87 QTPVLAGVNG--TDPFCRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVF 164 (276)
T ss_pred cCcceecccC--CCcchhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceec
Confidence 1222345552 2332 4566777777765543 111211 11345555666777778899
Q ss_pred CHHHHHHHHHcCCCEEEEe-cCCCCcccCCCC--c---hhhhHHHHHHHhCC---CCCcEEeecCcCCHHHHHHHHH--c
Q 020013 119 SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQD--G---LISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALS--L 187 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~~--~---~~~ll~~i~~~~~~---~~iPviaaGGI~~~~~v~~al~--~ 187 (332)
|+++|+.+.++|+|+|+.. |..-||..+... + ..+++..+.++... .-+|+.-.|=|++|+|..--+. -
T Consensus 165 s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~c~ 244 (276)
T COG5564 165 SFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDRCP 244 (276)
T ss_pred CHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhhCC
Confidence 9999999999999999983 666666553221 1 12333333333221 1277778888999999776664 5
Q ss_pred Ccceeeeccc
Q 020013 188 GAQGICLGTR 197 (332)
Q Consensus 188 GA~gV~~GT~ 197 (332)
|+||..=+|.
T Consensus 245 ~~~gfygass 254 (276)
T COG5564 245 GCDGFYGASS 254 (276)
T ss_pred CCCcccccch
Confidence 8888876664
No 274
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.95 E-value=0.0031 Score=56.09 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=68.4
Q ss_pred HHHHHHhcCCcEEEEc--cCC----CcHHH---HHHHHhC--C--CEEEEecC--CHHHHH----HHHHcCCCEEEE-ec
Q 020013 79 NIKAILSEKVAVLQVS--WGE----YSEEL---VLEAHSA--G--VKVVPQVG--SFDEAR----KAVNAGVDAIIV-QG 138 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~--~g~----~~~~~---i~~~~~~--g--~~v~~~v~--s~~~a~----~a~~~g~D~ivv-~G 138 (332)
..+.+++.|++-|.+- .+. ....+ ++.+++. + +|++.... +.++.. .+.++|+|+|.. .|
T Consensus 79 e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG 158 (221)
T PRK00507 79 EAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG 158 (221)
T ss_pred HHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 3456677888877643 221 12222 3333332 3 45554433 334333 356889997765 44
Q ss_pred CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 139 REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 139 ~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+..||. +...+..+++..+. +++|.++|||.|.+++.+++.+||+-+-..+.
T Consensus 159 ~~~~ga------t~~~v~~m~~~~~~-~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 159 FSTGGA------TVEDVKLMRETVGP-RVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCCCCC------CHHHHHHHHHHhCC-CceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 444442 24555555555542 69999999999999999999999997765444
No 275
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.95 E-value=0.02 Score=50.14 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|+..|.+.+..+ ..+.++.+++. ++.|. .+|.+.++++.+.++|+++++--+ ....
T Consensus 20 ~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~-----------~~~~ 88 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG-----------TTQE 88 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC-----------CCHH
Confidence 456777888999999886543 23567777653 34443 567899999999999999997521 1223
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++....+ .++|++. |+.|+..+..++.+||+.|-+
T Consensus 89 vi~~a~~----~~i~~iP--G~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 89 LLAAAND----SDVPLLP--GAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHH----cCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 3433332 2677754 777999999999999998764
No 276
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.94 E-value=0.0035 Score=56.31 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCcEEEEc--c---CCCc-H-------HHHHHHHhCCCEEEEecC-CHHH-------------HHHHHHcC
Q 020013 78 ENIKAILSEKVAVLQVS--W---GEYS-E-------ELVLEAHSAGVKVVPQVG-SFDE-------------ARKAVNAG 130 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~--~---g~~~-~-------~~i~~~~~~g~~v~~~v~-s~~~-------------a~~a~~~g 130 (332)
..++.+++.|+|.|.+. + +... . .+++.+++.+++++.... +.++ ++.+.+.|
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~G 159 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELG 159 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhC
Confidence 34677888899987653 2 1111 1 234455667899886632 2222 34567899
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCc----EEeecCc------CCHHHHHHHHHcCc--ceeeecccc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIP----IIAAGGI------VDARGYVAALSLGA--QGICLGTRF 198 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iP----viaaGGI------~~~~~v~~al~~GA--~gV~~GT~f 198 (332)
+|+|...-. +.+ +.......++.++.+.. .+| |.++||| .+.+++.+++.+|| .|+..|..+
T Consensus 160 aD~vKt~tg--~~~-~~t~~~~~~~~~~~~~~---~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 160 ADFVKTSTG--KPV-GATPEDVELMRKAVEAA---PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNI 233 (236)
T ss_dssp -SEEEEE-S--SSS-CSHHHHHHHHHHHHHTH---SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHH
T ss_pred CCEEEecCC--ccc-cccHHHHHHHHHHHHhc---CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999998433 111 12223455566666555 688 9999999 88888899999999 899888765
Q ss_pred c
Q 020013 199 V 199 (332)
Q Consensus 199 l 199 (332)
+
T Consensus 234 ~ 234 (236)
T PF01791_consen 234 W 234 (236)
T ss_dssp H
T ss_pred H
Confidence 4
No 277
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.91 E-value=0.13 Score=47.94 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=109.6
Q ss_pred CCCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+.+.++-+|. ..++|-. . .+...+.+...+..+.+... .|+.+++=--. +.+.+..+++.|.+.|
T Consensus 23 N~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~-~~e~i~~ai~~GftSV 101 (307)
T PRK05835 23 NFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGT-TFESCEKAVKAGFTSV 101 (307)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCC-CHHHHHHHHHcCCCEE
Confidence 355677777766553 2333311 0 12344555556665555443 68877753222 3667888889999888
Q ss_pred EEccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCC
Q 020013 92 QVSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN-AGVDAIIV-QGREAG 142 (332)
Q Consensus 92 ~~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaG 142 (332)
-+.....| .++++.++..|+.|=. ..+++++|....+ .|+|++-+ -|.-=|
T Consensus 102 M~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG 181 (307)
T PRK05835 102 MIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHG 181 (307)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCcccc
Confidence 77633322 2345556666655411 1346888888764 69999876 333212
Q ss_pred ccc--CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH----------------------HHHHHHHcCcceeeecccc
Q 020013 143 GHV--IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----------------------GYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 143 Gh~--~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----------------------~v~~al~~GA~gV~~GT~f 198 (332)
-.. +.+.-.+.+|.++.+.+ ++|++.-||=+.++ ++.+++.+|..-|=++|-+
T Consensus 182 ~Yk~~~~p~L~f~~L~~I~~~~---~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l 258 (307)
T PRK05835 182 AFKFKGEPKLDFERLQEVKRLT---NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDL 258 (307)
T ss_pred ccCCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHH
Confidence 221 12234588999999887 79999999887777 6788888888888887775
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
..+
T Consensus 259 ~~a 261 (307)
T PRK05835 259 RIA 261 (307)
T ss_pred HHH
Confidence 443
No 278
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.90 E-value=0.14 Score=47.31 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=111.1
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C-C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A-P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQ 92 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~-~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~ 92 (332)
.+.+.+.+.+|-++- ..++|- . . .+...+.+...+..+.+....|+.+++=--. +.+.+..+++.|...|-
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~-~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 24 NIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHE-SLDDIRRKVHAGVRSAM 102 (286)
T ss_pred EeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCeEe
Confidence 355667766666542 233332 1 0 1234455556666655555678777753222 35677788888988887
Q ss_pred EccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCCc
Q 020013 93 VSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN-AGVDAIIV-QGREAGG 143 (332)
Q Consensus 93 ~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaGG 143 (332)
+.....| .++++.++..|+.|=. ..+++++|+...+ .|+|.+-+ .|.-=|-
T Consensus 103 ~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 182 (286)
T PRK12738 103 IDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL 182 (286)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCC
Confidence 7633323 2445566666665411 1357888888764 69999876 3432122
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC-HHHHHHHHHcCcceeeeccccccC
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD-ARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~-~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
....+.-.+.++.++.+.+ ++|++.-||=+. .+++.+++.+|..-|=++|.+..+
T Consensus 183 Y~~~p~Ldfd~l~~I~~~~---~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a 238 (286)
T PRK12738 183 YSKTPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIA 238 (286)
T ss_pred CCCCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 2212334588999999988 799998775433 577889999999999999986544
No 279
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.90 E-value=0.0044 Score=55.61 Aligned_cols=86 Identities=21% Similarity=0.169 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCC-cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAG-GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaG-Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
.+.|+...+.|+|.+.+---++- |+ .....++.++.+.. -.|+...|||.+.+++.+++.+||+-|++||..
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~~~----~~n~~~i~~i~~~~---~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAEGV----GNNEMYIKEISKIG---FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcCCC----cchHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 35566666789998876433211 22 12356777777632 249999999999999999999999999999998
Q ss_pred ccCccCCCCHHHHHHHhcC
Q 020013 199 VASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~ 217 (332)
+..+| .+++...+-
T Consensus 106 ~~~p~-----~~~~~~~~~ 119 (232)
T PRK13586 106 FTNFN-----LFHDIVREI 119 (232)
T ss_pred hCCHH-----HHHHHHHHh
Confidence 87654 455555443
No 280
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.87 E-value=0.15 Score=47.10 Aligned_cols=176 Identities=15% Similarity=0.150 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-CC----CCCC-HHHHHHHHHHHHhhcC--CcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 21 DISGPELVAAVANAG---GLGLLR-AP----DWEA-PDYLRDLIRKTRSLTE--RPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~~----~~~~-~e~~~~~i~~~r~~~~--~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
.+.+.+.+.+|-+|- ..++|- .. .+.. .+.+...++.+.+..+ .|+.+++=--. +.+.+..+++.|..
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~-~~e~i~~ai~~Gft 102 (286)
T PRK08610 24 NLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGS-SFEKCKEAIDAGFT 102 (286)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCC-CHHHHHHHHHcCCC
Confidence 356777776665542 233331 10 1222 3445555555544433 58877753222 35677788888988
Q ss_pred EEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------ecCCHHHHHHHHH-cCCCEEEE-ecCCCC
Q 020013 90 VLQVSWGEYS--------EELVLEAHSAGVKVVP-----------------QVGSFDEARKAVN-AGVDAIIV-QGREAG 142 (332)
Q Consensus 90 ~I~~~~g~~~--------~~~i~~~~~~g~~v~~-----------------~v~s~~~a~~a~~-~g~D~ivv-~G~eaG 142 (332)
.|-+.....| .++++.++..|+.|=. ..+++++|+...+ .|+|.+-+ .|.-=|
T Consensus 103 SVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG 182 (286)
T PRK08610 103 SVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHG 182 (286)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccccc
Confidence 8877633322 2445566666665421 1358889988765 69998876 233212
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HHHHHHHHcCcceeeecccccc
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~ 200 (332)
-..+.+.-.+.++.++.+.+ ++|++.-||=+.+ +++.+++..|..-|=++|.+-.
T Consensus 183 ~Y~~~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~ 238 (286)
T PRK08610 183 PYKGEPKLGFKEMEEIGLST---GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQI 238 (286)
T ss_pred ccCCCCCCCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHH
Confidence 12112234588999999887 7999998876666 7789999999999999998643
No 281
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.87 E-value=0.0056 Score=55.24 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCH-HHHHHHHHcCCCEEEEecCCC--CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 118 GSF-DEARKAVNAGVDAIIVQGREA--GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 118 ~s~-~~a~~a~~~g~D~ivv~G~ea--GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++ +.|+...+.|+|.+.+---++ .|+ ...+.++.++.+.+ .|+...|||.+.+++..++.+||+-|++
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~----~~n~~~i~~i~~~~----~~v~vGGGIrs~e~~~~~l~~Ga~rvvi 101 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENS----VENLPVLEKLSEFA----EHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCC----cchHHHHHHHHhhc----CcEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 344 446666778999887743321 122 23467788887754 6999999999999999999999999999
Q ss_pred ccccccCcc
Q 020013 195 GTRFVASEE 203 (332)
Q Consensus 195 GT~fl~t~E 203 (332)
||..+..+|
T Consensus 102 gT~a~~~p~ 110 (241)
T PRK14114 102 SSKVLEDPS 110 (241)
T ss_pred CchhhCCHH
Confidence 999876644
No 282
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.87 E-value=0.0045 Score=55.95 Aligned_cols=71 Identities=24% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHcCCCEEEE---ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 123 ARKAVNAGVDAIIV---QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 123 a~~a~~~g~D~ivv---~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
++...+.|++.+-+ .+.+ |. .....++.++.+.+ .+|+...|||.+.+++..++.+||+-|++||..+
T Consensus 37 a~~~~~~g~~~lhivDLd~a~--g~----~~n~~~i~~i~~~~---~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 37 AKWWEQGGAEWIHLVDLDAAF--GG----GNNEMMLEEVVKLL---VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHhCCCeEEEEEECCCCC--CC----cchHHHHHHHHHHC---CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 34455566665554 3443 21 12366888888776 6899999999999999999999999999999988
Q ss_pred cCc
Q 020013 200 ASE 202 (332)
Q Consensus 200 ~t~ 202 (332)
..+
T Consensus 108 ~~p 110 (243)
T TIGR01919 108 ENP 110 (243)
T ss_pred CCH
Confidence 643
No 283
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.86 E-value=0.032 Score=48.62 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHh--CCCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHS--AGVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~--~g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|++++.+.+..+ ..+.++.+++ .++.+. .+|.+.++++.+.++|+++++--+ ....
T Consensus 24 ~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~-----------~~~~ 92 (196)
T PF01081_consen 24 PIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG-----------FDPE 92 (196)
T ss_dssp HHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS-------------HH
T ss_pred HHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC-----------CCHH
Confidence 456777889999999886543 2356665554 356655 468899999999999999998622 1233
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
++....+. ++|++. |+.|+.++..++.+|++-|-+ +.-+.-.-..|-+.|..
T Consensus 93 v~~~~~~~----~i~~iP--G~~TptEi~~A~~~G~~~vK~-----FPA~~~GG~~~ik~l~~ 144 (196)
T PF01081_consen 93 VIEYAREY----GIPYIP--GVMTPTEIMQALEAGADIVKL-----FPAGALGGPSYIKALRG 144 (196)
T ss_dssp HHHHHHHH----TSEEEE--EESSHHHHHHHHHTT-SEEEE-----TTTTTTTHHHHHHHHHT
T ss_pred HHHHHHHc----CCcccC--CcCCHHHHHHHHHCCCCEEEE-----ecchhcCcHHHHHHHhc
Confidence 44444432 688765 677999999999999998874 22222222566666665
No 284
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.83 E-value=0.0043 Score=62.25 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCC--cccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-----------HHHHHHHHc
Q 020013 121 DEARKAVNAGVDAIIVQGREAG--GHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-----------RGYVAALSL 187 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaG--Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-----------~~v~~al~~ 187 (332)
+.|+...+.|+|-|.+-.-++- |+. .....+.++.++.+.+ .+|+-+.|||.+- +++.++|.+
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~-~~~~~~~~i~~i~~~~---~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~ 346 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPL-GDLPMLEVLRRASENV---FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRS 346 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcc-cchhHHHHHHHHHhhC---CCCEEEcCCccccccccccccchHHHHHHHHHc
Confidence 4566777899999988655431 221 2234577888888877 7999999999997 668999999
Q ss_pred CcceeeeccccccCc
Q 020013 188 GAQGICLGTRFVASE 202 (332)
Q Consensus 188 GA~gV~~GT~fl~t~ 202 (332)
|||-|.+||..+..+
T Consensus 347 GadkV~i~s~Av~~~ 361 (538)
T PLN02617 347 GADKISIGSDAVYAA 361 (538)
T ss_pred CCCEEEEChHHHhCh
Confidence 999999999877754
No 285
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.80 E-value=0.27 Score=44.86 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=103.7
Q ss_pred ceecCCCCCCCCcHHHHHHHHhC-------CCceeecCCCCC-------------CHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 12 GIVQAPLGPDISGPELVAAVANA-------GGLGLLRAPDWE-------------APDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~a-------GglG~i~~~~~~-------------~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
-||.+|-. +-+.+.+..+++. -|+.++.-+.|. ..++=.++++++++.++.|+-..+.
T Consensus 18 ~~iaGPCs--vEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~ 95 (281)
T PRK12457 18 VLFGGINV--LESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVH 95 (281)
T ss_pred EEEecCCc--ccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeC
Confidence 36667875 6666665555542 345455331121 1134456778888877777766655
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEec---CCHHHHHH----HHHcCCCEEEE--ecCCC
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQV---GSFDEARK----AVNAGVDAIIV--QGREA 141 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~v---~s~~~a~~----a~~~g~D~ivv--~G~ea 141 (332)
- .++++.+.+. +|++++.. ..-.-++++.+.+.|.+|..+= .++++-.. ....|-.-|++ .|...
T Consensus 96 ~----~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~f 170 (281)
T PRK12457 96 E----VEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSF 170 (281)
T ss_pred C----HHHHHHHhhh-CeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCC
Confidence 3 6778888887 99999963 2223367777777788887543 46776544 34557665555 34432
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeee
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICL 194 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~ 194 (332)
|.. ....++..+|.+++... ..|||.. ||..+ +.-+.++++.||||+.+
T Consensus 171 -gy~-~~~~D~~~ip~mk~~~t--~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~i 236 (281)
T PRK12457 171 -GYD-NLVVDMLGFRQMKRTTG--DLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFL 236 (281)
T ss_pred -CCC-CcccchHHHHHHHhhCC--CCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 222 12345667777776421 6899874 33311 11245778899999998
No 286
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.79 E-value=0.0047 Score=58.48 Aligned_cols=78 Identities=31% Similarity=0.590 Sum_probs=55.7
Q ss_pred CCEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH
Q 020013 110 GVKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL 185 (332)
Q Consensus 110 g~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al 185 (332)
...|...++ +.+.+..+.++|+|+|+++... ||. ......++.+++..+ ++||| +|.|.|++.+..++
T Consensus 96 ~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~--g~s---~~~~~~ik~ik~~~~--~~~vi-aGNV~T~e~a~~L~ 167 (352)
T PF00478_consen 96 RLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAH--GHS---EHVIDMIKKIKKKFP--DVPVI-AGNVVTYEGAKDLI 167 (352)
T ss_dssp CBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SS--TTS---HHHHHHHHHHHHHST--TSEEE-EEEE-SHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHcCCCEEEccccC--ccH---HHHHHHHHHHHHhCC--CceEE-ecccCCHHHHHHHH
Confidence 344555443 2456677788999999998652 443 344677888888774 68887 68899999999999
Q ss_pred HcCcceeeec
Q 020013 186 SLGAQGICLG 195 (332)
Q Consensus 186 ~~GA~gV~~G 195 (332)
.+|||+|-+|
T Consensus 168 ~aGad~vkVG 177 (352)
T PF00478_consen 168 DAGADAVKVG 177 (352)
T ss_dssp HTT-SEEEES
T ss_pred HcCCCEEEEe
Confidence 9999999987
No 287
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.79 E-value=0.035 Score=52.20 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=76.2
Q ss_pred CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh---CCCEEEEecC-C---HHHHHHHHHcCC--CE
Q 020013 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS---AGVKVVPQVG-S---FDEARKAVNAGV--DA 133 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~---~g~~v~~~v~-s---~~~a~~a~~~g~--D~ 133 (332)
..||-+|=|...-+.+....+.+.|--.+..-+ .+++.....++ .+..+...++ + .+++....++|+ |+
T Consensus 37 ~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~--~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~ 114 (326)
T PRK05458 37 KLPVVPANMQTIIDEKIAEWLAENGYFYIMHRF--DPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEY 114 (326)
T ss_pred cCcEEEecccchhHHHHHHHHHHcCCEEEEecC--CHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCE
Confidence 357777766432223444555555544443322 34443433333 3454444443 2 355667778855 99
Q ss_pred EEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 134 IIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 134 ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
|.++... ||. ....++++++++..+ ++| +.+|.|.|.+++..+..+|+|++.+|
T Consensus 115 i~iD~a~--gh~---~~~~e~I~~ir~~~p--~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 115 ITIDIAH--GHS---DSVINMIQHIKKHLP--ETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred EEEECCC--Cch---HHHHHHHHHHHhhCC--CCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 9998764 553 345677888887663 345 45677999999999999999999877
No 288
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=96.79 E-value=0.076 Score=46.92 Aligned_cols=139 Identities=18% Similarity=0.201 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHH---HHhc-CCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKA---ILSE-KVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~---~~~~-~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~ 127 (332)
+.++++++..+.|+-+-+...+ .++.++. +.+. +--+|-+..-....+.++.+++.|+++-. .|-|.+++..+.
T Consensus 41 ~~~~~i~~~~~~~v~~qv~~~~-~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa 119 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVVSTD-AEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSAAQALLAA 119 (211)
T ss_pred HHHHHHHHhcCCCEEEEEEeCC-HHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCHHHHHHHH
Confidence 3445555554566666655332 2333333 3333 33344454322234678888888998764 477999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCCCC-cEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDRDI-PIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~i-PviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
++|+++|-. -|+ +.-|+ ..+.++.++.+.+...+. .-|.+.|+.++.++.+++.+|||.|-+.-.
T Consensus 120 ~AGA~yvsP~vgR~~~~g~-----dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 120 KAGATYVSPFVGRIDDLGG-----DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPD 187 (211)
T ss_pred HcCCCEEEEecChHhhcCC-----CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHH
Confidence 999999653 232 11111 235666666665533232 355667788999999999999999987433
No 289
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.75 E-value=0.0055 Score=59.11 Aligned_cols=68 Identities=24% Similarity=0.444 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+++..+.++|+|+|+++... ||. .....+++++++.++ +++ +.+|+|.|.+++..++.+|||+|.+|
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~--g~~---~~~~~~v~~ik~~~p--~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAH--GHS---TRIIELVKKIKTKYP--NLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCC--CCC---hhHHHHHHHHHhhCC--CCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 367788889999999997653 442 345677888887653 455 45688889999999999999999877
No 290
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=96.73 E-value=0.012 Score=50.22 Aligned_cols=129 Identities=20% Similarity=0.328 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEeecC---CCCHHHHHHHHhcC-CcEEEEccCCCcHHHHHHHHhCCCEEEEec---C--CH
Q 020013 50 YLRDLIRKTRSLTERPFGVGVVLA---FPHNENIKAILSEK-VAVLQVSWGEYSEELVLEAHSAGVKVVPQV---G--SF 120 (332)
Q Consensus 50 ~~~~~i~~~r~~~~~p~gvnl~~~---~~~~~~~~~~~~~~-~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v---~--s~ 120 (332)
.+.+.++++++. ++..-||+=.- ..++.-++.+.+.. +|.|... -...++..++.|...+--+ . +.
T Consensus 32 ~l~~~v~~~~~~-gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST----k~~~i~~Ak~~gl~tIqRiFliDS~al 106 (175)
T PF04309_consen 32 NLKDIVKRLKAA-GKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST----KSNLIKRAKKLGLLTIQRIFLIDSSAL 106 (175)
T ss_dssp CHHHHHHHHHHT-T-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES----SHHHHHHHHHTT-EEEEEEE-SSHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC----CHHHHHHHHHcCCEEEEEeeeecHHHH
Confidence 356677777764 44455554221 23466777777765 9998775 3568999999998766332 2 34
Q ss_pred HHHHH-HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC-CCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 121 DEARK-AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 121 ~~a~~-a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+.+ ..+..+|+|=+-. + .+|.+.+.+. ..++|+|++|=|.+.+++.++|+.||++|-....
T Consensus 107 ~~~~~~i~~~~PD~vEilP--------g------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~ 171 (175)
T PF04309_consen 107 ETGIKQIEQSKPDAVEILP--------G------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSNK 171 (175)
T ss_dssp HHHHHHHHHHT-SEEEEES--------C------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--H
T ss_pred HHHHHHHhhcCCCEEEEch--------H------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCCh
Confidence 44333 4567999996621 1 2345544432 2379999999999999999999999999987654
No 291
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.65 E-value=0.063 Score=46.18 Aligned_cols=107 Identities=24% Similarity=0.314 Sum_probs=69.4
Q ss_pred cHHHHHHHHhCCC--ceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc------
Q 020013 24 GPELVAAVANAGG--LGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW------ 95 (332)
Q Consensus 24 ~~~la~avs~aGg--lG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~------ 95 (332)
+-+-+.++.++|. +.+=...+ ..|+.+.++++++|+.. .++ |-.-...+....+.+.|+|+|.+..
T Consensus 53 T~~ev~~l~~aGadIIAlDaT~R-~Rp~~l~~li~~i~~~~-~l~----MADist~ee~~~A~~~G~D~I~TTLsGYT~~ 126 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDATDR-PRPETLEELIREIKEKY-QLV----MADISTLEEAINAAELGFDIIGTTLSGYTPY 126 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-SSS-S-SS-HHHHHHHHHHCT-SEE----EEE-SSHHHHHHHHHTT-SEEE-TTTTSSTT
T ss_pred CHHHHHHHHHcCCCEEEEecCCC-CCCcCHHHHHHHHHHhC-cEE----eeecCCHHHHHHHHHcCCCEEEcccccCCCC
Confidence 5678889999884 22223322 33488899999998754 222 2222224556677889999998642
Q ss_pred --CC-CcHHHHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 --GE-YSEELVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 --g~-~~~~~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+. |.-++++++.+.+++|+. .+++++++.++++.|++.|+|
T Consensus 127 t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 127 TKGDGPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp STTSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred CCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 11 223678888888999985 488999999999999999999
No 292
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=96.63 E-value=0.46 Score=42.91 Aligned_cols=171 Identities=18% Similarity=0.240 Sum_probs=103.1
Q ss_pred ceecCCCCCCCCcHHHHHHHHh----CC---CceeecCCCCC-------------CHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 12 GIVQAPLGPDISGPELVAAVAN----AG---GLGLLRAPDWE-------------APDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~----aG---glG~i~~~~~~-------------~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
-+|.||-. +-+.+.+..+++ +| ++|.+.-++|. ..++=.++++++++.++.|+-..++
T Consensus 4 ~viAGPCs--vEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~ 81 (258)
T TIGR01362 4 FLIAGPCV--IESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDVH 81 (258)
T ss_pred eEEecCCc--ccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeC
Confidence 47778875 666666555543 22 45444331221 1133456778888877777776655
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEe---cCCHHHHHH----HHHcCCCEEEE--ecCCC
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQ---VGSFDEARK----AVNAGVDAIIV--QGREA 141 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~---v~s~~~a~~----a~~~g~D~ivv--~G~ea 141 (332)
- .++++.+.+. +|++++.. ..-.-++++.+-+.|.+|..+ ..++++-.. ....|-+-|++ .|...
T Consensus 82 ~----~~~~~~vae~-vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf 156 (258)
T TIGR01362 82 E----SSQCEPVAEV-VDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSF 156 (258)
T ss_pred C----HHHHHHHHhh-CcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc
Confidence 3 5778888777 99999963 222336777777778888754 347776443 44567665555 45432
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeeec
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~G 195 (332)
|.. ....++..+|.+++. +.|||.. ||..+ +.-..+++++||||+.+=
T Consensus 157 -~y~-r~~~D~~~ip~~k~~----~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iE 221 (258)
T TIGR01362 157 -GYN-NLVVDMRSLPIMREL----GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFME 221 (258)
T ss_pred -CCC-CcccchhhhHHHHhc----CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 221 123456667776653 5899874 34321 112356788999999983
No 293
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.60 E-value=0.05 Score=47.16 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCC--CEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAG--VKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g--~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+.++.+.+.|++.|++..-.+ ..+.++.+++.. +.+. ..+.+.+++..+.+.|+|+|.. ++. ...
T Consensus 20 ~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~-----p~~------~~~ 88 (190)
T cd00452 20 ALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS-----PGL------DPE 88 (190)
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc-----CCC------CHH
Confidence 456778888999999975332 234566666542 4444 3677899999999999999964 111 122
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
++.. ++.. ++|++. |+.|.+++.+++.+|||-+.+
T Consensus 89 ~~~~-~~~~---~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 89 VVKA-ANRA---GIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred HHHH-HHHc---CCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 3332 2223 577776 888999999999999999997
No 294
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.52 E-value=0.059 Score=50.51 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHHHhc-CCcEEEEccCCCcHHHHHHHHh----CCCEEEEecC----CHHHHHHHHHc--CCCEEEEecCCCCcccC
Q 020013 78 ENIKAILSE-KVAVLQVSWGEYSEELVLEAHS----AGVKVVPQVG----SFDEARKAVNA--GVDAIIVQGREAGGHVI 146 (332)
Q Consensus 78 ~~~~~~~~~-~~~~I~~~~g~~~~~~i~~~~~----~g~~v~~~v~----s~~~a~~a~~~--g~D~ivv~G~eaGGh~~ 146 (332)
+....+.+. +.-+++=++ .++++.+.+++ .+..+...++ +.+.+....++ ++|+|+++-. =||.
T Consensus 60 ~mA~~la~~g~~~~iHk~~--~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~A--hGhs- 134 (343)
T TIGR01305 60 EMAAALSQHSIFTAIHKHY--SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVA--NGYS- 134 (343)
T ss_pred HHHHHHHHCCCeEEEeeCC--CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECC--CCcH-
Confidence 334444443 345555554 34555655543 2333333443 23445556666 5999999744 2453
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
......++.+++.. .-+.|.+|.|.|++++..++.+|||+|.+|
T Consensus 135 --~~~i~~ik~ir~~~---p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 135 --EHFVEFVKLVREAF---PEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred --HHHHHHHHHHHhhC---CCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34577788888876 346777899999999999999999999876
No 295
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.50 E-value=0.31 Score=44.57 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=99.9
Q ss_pred eecCCCCCCCCcHHHHHHHHh----C---CCceeecCCCCC-------------CHHHHHHHHHHHHhhcCCcEEEEeec
Q 020013 13 IVQAPLGPDISGPELVAAVAN----A---GGLGLLRAPDWE-------------APDYLRDLIRKTRSLTERPFGVGVVL 72 (332)
Q Consensus 13 ii~apM~~g~s~~~la~avs~----a---GglG~i~~~~~~-------------~~e~~~~~i~~~r~~~~~p~gvnl~~ 72 (332)
+|.||-. +-+.+.+..+++ + -|+.++.-+.|. ..++=.++++++++.++.|+-..+.-
T Consensus 19 lIAGPC~--iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~ 96 (290)
T PLN03033 19 LLAGPNV--IESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHE 96 (290)
T ss_pred EEecCCh--hcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCC
Confidence 6778875 666655554443 2 256555432222 12344567888888777777666553
Q ss_pred CCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEe---cCCHHHHHH----HHHcCCCEEEE--ecCCCC
Q 020013 73 AFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQ---VGSFDEARK----AVNAGVDAIIV--QGREAG 142 (332)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~---v~s~~~a~~----a~~~g~D~ivv--~G~eaG 142 (332)
.++++.+.+. +|++++.. -+-.-++++.+.+.|.+|..+ ..++++-.. ....|-+-|++ .|...
T Consensus 97 ----~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~tF- 170 (290)
T PLN03033 97 ----SSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMF- 170 (290)
T ss_pred ----HHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc-
Confidence 6778888877 79999963 221224555666678887754 347776544 44567665555 35432
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEee----------------cCcCCH--HH----HHHHHHcCcceeee
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAA----------------GGIVDA--RG----YVAALSLGAQGICL 194 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaa----------------GGI~~~--~~----v~~al~~GA~gV~~ 194 (332)
|.. ....++..+|.++. . ..|||.. ||.+.+ +- ..+++++||||+.+
T Consensus 171 gy~-~lv~D~r~ip~mk~-~---~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfi 239 (290)
T PLN03033 171 GYN-DLIVDPRNLEWMRE-A---NCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFM 239 (290)
T ss_pred CCC-CcccchhhhHHHHh-c---CCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 221 12345667777764 3 6898864 111111 22 35777899999998
No 296
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.49 E-value=0.4 Score=44.29 Aligned_cols=176 Identities=20% Similarity=0.288 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHhCC---CceeecC--C---CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEE
Q 020013 22 ISGPELVAAVANAG---GLGLLRA--P---DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQV 93 (332)
Q Consensus 22 ~s~~~la~avs~aG---glG~i~~--~---~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~ 93 (332)
+.+.+.+.++-++. ..++|-. . .+...+.+...+..+.+....|+.+++=--. +.+.+..+++.|...|-+
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~-~~e~i~~ai~~GftSVM~ 103 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGT-DFEQVMKCIRNGFTSVMI 103 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHcCCCeEEE
Confidence 45666665555442 2333311 0 1233444555555554445667777653222 356777888889888877
Q ss_pred ccCCCcH--------HHHHHHHhCCCEEEE-------------------ecCCHHHHHHHH-HcCCCEEEE-ecCCCCcc
Q 020013 94 SWGEYSE--------ELVLEAHSAGVKVVP-------------------QVGSFDEARKAV-NAGVDAIIV-QGREAGGH 144 (332)
Q Consensus 94 ~~g~~~~--------~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh 144 (332)
.....|. ++++.++..|+.|=. ..++++++++.. +.|+|.+-+ .|.-=|-.
T Consensus 104 DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y 183 (284)
T PRK12857 104 DGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPY 183 (284)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCcccccc
Confidence 6333222 345556666655411 034788888876 569999876 33322222
Q ss_pred cCCCCchhhhHHHHHHHhCCCCCcEEeecCcC-CHHHHHHHHHcCcceeeeccccccC
Q 020013 145 VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 145 ~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~-~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+.+.-.+.++.++.+.+ ++|++.-||=+ ..+++.+++.+|..-|=++|.+...
T Consensus 184 ~~~p~Ld~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 238 (284)
T PRK12857 184 KGEPKLDFDRLAKIKELV---NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREA 238 (284)
T ss_pred CCCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 212334588999999887 79999777543 3477889999999999999986543
No 297
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.48 E-value=0.26 Score=44.95 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH--
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV-- 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~-- 127 (332)
++++.++..+.||..-++ +...++.+.+. +|++.++... ...++++.+.+.|.+|+.+-+ ++++...+.
T Consensus 80 ~l~~~~~~~Gl~~~t~~~----d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 154 (260)
T TIGR01361 80 LLRRAADEHGLPVVTEVM----DPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEY 154 (260)
T ss_pred HHHHHHHHhCCCEEEeeC----ChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 344444444555555443 35677777777 9999987443 334678888888999987654 677766554
Q ss_pred --HcCC-CEEEEe-cC-CC-CcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCC-----HHHHHHHHHcCcceeeec
Q 020013 128 --NAGV-DAIIVQ-GR-EA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVD-----ARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 --~~g~-D~ivv~-G~-ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~-----~~~v~~al~~GA~gV~~G 195 (332)
+.|. +.++++ |. .. +-+ .....+..++.+++.. ++||+. ++-... ..-..++.++||+|+++=
T Consensus 155 i~~~Gn~~i~l~~rG~s~y~~~~--~~~~dl~~i~~lk~~~---~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE 229 (260)
T TIGR01361 155 ILSSGNGNVILCERGIRTFEKAT--RNTLDLSAVPVLKKET---HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIE 229 (260)
T ss_pred HHHcCCCcEEEEECCCCCCCCCC--cCCcCHHHHHHHHHhh---CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEE
Confidence 4576 555555 33 11 111 1234577788887765 799999 333222 334457889999999886
Q ss_pred cccccC
Q 020013 196 TRFVAS 201 (332)
Q Consensus 196 T~fl~t 201 (332)
+-|-..
T Consensus 230 ~H~t~d 235 (260)
T TIGR01361 230 VHPDPE 235 (260)
T ss_pred eCCCcc
Confidence 555433
No 298
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.48 E-value=0.021 Score=53.70 Aligned_cols=123 Identities=21% Similarity=0.219 Sum_probs=75.9
Q ss_pred HHHHHhcCCcEEEEc--cCCCcH--------HHHHHHHhCCCEEEEec-------CC-------HH----HHHHHHHcCC
Q 020013 80 IKAILSEKVAVLQVS--WGEYSE--------ELVLEAHSAGVKVVPQV-------GS-------FD----EARKAVNAGV 131 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~--~g~~~~--------~~i~~~~~~g~~v~~~v-------~s-------~~----~a~~a~~~g~ 131 (332)
++.++..|+++|.++ +|.+.+ ++++.+++.|++++..+ .+ ++ .++.+.+.|+
T Consensus 152 VedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcC
Confidence 678889999998764 454221 23455677899987532 11 11 2455778999
Q ss_pred CEEEEecCC-CCcc-------cC-------CCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-----HHHHHH---HHcC
Q 020013 132 DAIIVQGRE-AGGH-------VI-------GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-----RGYVAA---LSLG 188 (332)
Q Consensus 132 D~ivv~G~e-aGGh-------~~-------~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-----~~v~~a---l~~G 188 (332)
|+|.+.-++ .++. .. .......+++.+++..-...+||+.+||=... +.+.++ +..|
T Consensus 232 DIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aG 311 (348)
T PRK09250 232 DIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAG 311 (348)
T ss_pred CEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcC
Confidence 999985431 1110 00 00133445555555431115899999998742 235677 8899
Q ss_pred cceeeeccccccCc
Q 020013 189 AQGICLGTRFVASE 202 (332)
Q Consensus 189 A~gV~~GT~fl~t~ 202 (332)
|.|+.+|.-.+-.+
T Consensus 312 a~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 312 GMGLIIGRKAFQRP 325 (348)
T ss_pred CcchhhchhhhcCC
Confidence 99999998766553
No 299
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.47 E-value=0.073 Score=47.34 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHH----hC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAH----SA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~----~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
+..+.+.+.|+.++.+.+-.+ ..+.++.++ +. ++.+. .+|.|.++++.+.++|+++++--+.
T Consensus 31 ~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~---------- 100 (222)
T PRK07114 31 KVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLF---------- 100 (222)
T ss_pred HHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCC----------
Confidence 346677889999999987442 235566653 21 23343 5678999999999999999986221
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
...++....+ .++|++. |+.|+.++..++.+|++.|-+
T Consensus 101 -~~~v~~~~~~----~~i~~iP--G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 101 -NPDIAKVCNR----RKVPYSP--GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred -CHHHHHHHHH----cCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 1233433332 2677754 777999999999999998764
No 300
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.46 E-value=0.065 Score=47.36 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhC--CCEEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSA--GVKVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~--g~~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+..+.+.+.|+++|.+.+-.+ ..+.++.+++. ++.|. .++.+.++++.+.++|+|+++.-+. . ..
T Consensus 31 ~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~-~~ 99 (212)
T PRK05718 31 PLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------T-PP 99 (212)
T ss_pred HHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------C-HH
Confidence 345667778999999876432 23566777653 34444 4678899999999999999987322 1 23
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
++....+ . ++|++. |+.|+..+.+++.+||+-|-+ +..++.....|-+.+..
T Consensus 100 vi~~a~~-~---~i~~iP--G~~TptEi~~a~~~Ga~~vKl-----FPa~~~gg~~~lk~l~~ 151 (212)
T PRK05718 100 LLKAAQE-G---PIPLIP--GVSTPSELMLGMELGLRTFKF-----FPAEASGGVKMLKALAG 151 (212)
T ss_pred HHHHHHH-c---CCCEeC--CCCCHHHHHHHHHCCCCEEEE-----ccchhccCHHHHHHHhc
Confidence 4444333 2 577653 777999999999999999887 22232223555555544
No 301
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.46 E-value=0.15 Score=46.27 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=93.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceee-c---------CC--CCCCHHHHHHHHHHHHhhcCCc-EEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL-R---------AP--DWEAPDYLRDLIRKTRSLTERP-FGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i-~---------~~--~~~~~e~~~~~i~~~r~~~~~p-~gvn 69 (332)
|.++..-..|++ |. +.-|...+..+.++|.=.++ + .+ ...+.+++....+.++..++.| +-+.
T Consensus 4 lr~l~~~~~~l~---~~-~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD 79 (254)
T cd06557 4 LQKMKKAGEKIV---ML-TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVAD 79 (254)
T ss_pred HHHHHhCCCcEE---EE-eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEe
Confidence 445555456775 32 46788888888787731111 1 11 1245666666667766666777 4444
Q ss_pred ee-cCCCC--HH----HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec----------------C-CH-----
Q 020013 70 VV-LAFPH--NE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV----------------G-SF----- 120 (332)
Q Consensus 70 l~-~~~~~--~~----~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v----------------~-s~----- 120 (332)
+- ..... ++ ..+.+.+.|++.|.+--+....+.++.+.+.|++|+..+ . +.
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 42 11111 11 234455589999999644334567788888998876211 1 22
Q ss_pred --HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC
Q 020013 121 --DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG 174 (332)
Q Consensus 121 --~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG 174 (332)
+.++..+++|+|.|++++. + -.+.+++.+.+ ++|+|..|.
T Consensus 160 ~i~ra~a~~~AGA~~i~lE~v----------~-~~~~~~i~~~v---~iP~igiGa 201 (254)
T cd06557 160 LLEDALALEEAGAFALVLECV----------P-AELAKEITEAL---SIPTIGIGA 201 (254)
T ss_pred HHHHHHHHHHCCCCEEEEcCC----------C-HHHHHHHHHhC---CCCEEEecc
Confidence 3445567899999999653 2 24778888887 799997653
No 302
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.42 E-value=0.011 Score=58.94 Aligned_cols=190 Identities=16% Similarity=0.256 Sum_probs=117.5
Q ss_pred cchhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcC----CcEEE---------
Q 020013 2 GWRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTE----RPFGV--------- 68 (332)
Q Consensus 2 ~~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~----~p~gv--------- 68 (332)
.+++.|++++|||++||. ++++++||.+++++||+|+|.. + .+++.....++++++... .|..+
T Consensus 46 ~lt~~~~~~~Pivsa~M~-~vt~~~lA~Ama~aGGiGfI~~-~-as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA 122 (505)
T PLN02274 46 RLSRNIPLSIPCVSSPMD-TVTESDMAIAMAALGGIGIVHY-N-NTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSL 122 (505)
T ss_pred ccccccCcCCCEeccCCc-ccchHHHHHHHHhCCCeEEEcC-C-CCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHH
Confidence 367899999999999997 7999999999999999999986 3 578888888888775311 01100
Q ss_pred -------------------------EeecC-------C----------------------CCHHHHHHHHhcCCcEEEEc
Q 020013 69 -------------------------GVVLA-------F----------------------PHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 69 -------------------------nl~~~-------~----------------------~~~~~~~~~~~~~~~~I~~~ 94 (332)
+++.. . +..+.++.+.+.+...+-+-
T Consensus 123 ~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVV 202 (505)
T PLN02274 123 DELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLV 202 (505)
T ss_pred HHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 00000 0 00112222333333222110
Q ss_pred --c----CC-CcHHHHHHHHh---------C-C-CEEEEecC----CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 95 --W----GE-YSEELVLEAHS---------A-G-VKVVPQVG----SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 95 --~----g~-~~~~~i~~~~~---------~-g-~~v~~~v~----s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
. |. ...++.+.... . | ..|...|+ ..+.+..+.++|+|+|+++.. -||. ...|
T Consensus 203 D~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~--~g~~---~~~~ 277 (505)
T PLN02274 203 NEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSS--QGDS---IYQL 277 (505)
T ss_pred cCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCC--CCCc---HHHH
Confidence 0 00 01122222211 1 1 22333443 246677788999999999764 3443 3457
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec--cccccCc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG--TRFVASE 202 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G--T~fl~t~ 202 (332)
..++++++..+ ++ .+.+|+|.|.+++..++.+|||+|.+| +...++.
T Consensus 278 ~~i~~ik~~~p--~~-~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t 326 (505)
T PLN02274 278 EMIKYIKKTYP--EL-DVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTT 326 (505)
T ss_pred HHHHHHHHhCC--CC-cEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccC
Confidence 88899888652 34 445699999999999999999999775 4444433
No 303
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=96.41 E-value=0.12 Score=46.94 Aligned_cols=120 Identities=21% Similarity=0.303 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHHHHHH----HHhCCCEEEEecCCHHHHHH--------------HHHcC--
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEELVLE----AHSAGVKVVPQVGSFDEARK--------------AVNAG-- 130 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~~i~~----~~~~g~~v~~~v~s~~~a~~--------------a~~~g-- 130 (332)
-..+.+.+.|++++.++ |++ ..+.+.+ +.+.|+.++..++...+.+. .+ .+
T Consensus 77 vS~~mLkd~G~~~viiGHSERR~~f~E-td~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l-~~~~ 154 (250)
T PRK00042 77 ISAEMLKDLGVKYVIIGHSERRQYFGE-TDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAAL-AGLS 154 (250)
T ss_pred cCHHHHHHCCCCEEEeCcccccCccCc-CHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHH-ccCC
Confidence 34677888999999885 343 3445544 67789998888875433222 11 11
Q ss_pred ----CCEEEE-ecCCCCc--ccCCCC---chhhhHHHHHHH-hC--CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 131 ----VDAIIV-QGREAGG--HVIGQD---GLISLLPMVVDL-IG--DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 131 ----~D~ivv-~G~eaGG--h~~~~~---~~~~ll~~i~~~-~~--~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
...+++ +...+=| ....+. .....+++.... .. ..+++|+..|+| +++++.+.+. .+.||+.+|+
T Consensus 155 ~~~~~~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV-~~~N~~~l~~~~~vDG~LVG~ 233 (250)
T PRK00042 155 AEQFANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSV-KPDNAAELMAQPDIDGALVGG 233 (250)
T ss_pred HHHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCC-CHHHHHHHhcCCCCCEEEEee
Confidence 123443 3333333 221111 112333333221 00 125899999999 7888887765 6899999999
Q ss_pred cccc
Q 020013 197 RFVA 200 (332)
Q Consensus 197 ~fl~ 200 (332)
+-+-
T Consensus 234 Asl~ 237 (250)
T PRK00042 234 ASLK 237 (250)
T ss_pred eeec
Confidence 9873
No 304
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.40 E-value=0.32 Score=45.04 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcH--------HHHHHHHhCCCEEEEe----
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSE--------ELVLEAHSAGVKVVPQ---- 116 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~--------~~i~~~~~~g~~v~~~---- 116 (332)
+.+...++.+.+....|+.+++=--. +.+.+..+++.|.+.|-+.....|. ++++.++..|+.|=..
T Consensus 59 ~~~~~~~~~~a~~~~vPValHLDH~~-~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i 137 (287)
T PF01116_consen 59 EYLAAMVKAAAEEASVPVALHLDHGK-DFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHI 137 (287)
T ss_dssp HHHHHHHHHHHHHSTSEEEEEEEEE--SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBS
T ss_pred HHHHHHHHHHHHHcCCCEEeecccCC-CHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeee
Confidence 44455555555556778887763222 2577888889999998886433332 4556667777766321
Q ss_pred ----------------cCCHHHHHHHH-HcCCCEEEE-ecCCCCcccC--CCCchhhhHHHHHHHhCCCCCcEEeecCcC
Q 020013 117 ----------------VGSFDEARKAV-NAGVDAIIV-QGREAGGHVI--GQDGLISLLPMVVDLIGDRDIPIIAAGGIV 176 (332)
Q Consensus 117 ----------------v~s~~~a~~a~-~~g~D~ivv-~G~eaGGh~~--~~~~~~~ll~~i~~~~~~~~iPviaaGGI~ 176 (332)
.+++++|+... +.|+|.+-+ .|.-=|.... .+.-.+.+|.++.+.+. ++|++.-||=+
T Consensus 138 ~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~--~iPLVlHGgSG 215 (287)
T PF01116_consen 138 GGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP--DIPLVLHGGSG 215 (287)
T ss_dssp SSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH--TSEEEESSCTT
T ss_pred eccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC--CCCEEEECCCC
Confidence 14678888765 679999877 3432232222 22345889999999873 59999888655
Q ss_pred CH-HHHHHHHHcCcceeeeccccccC
Q 020013 177 DA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 177 ~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+ +++.+++.+|..-|=++|.+..+
T Consensus 216 ~~~e~~~~ai~~Gi~KiNi~T~~~~a 241 (287)
T PF01116_consen 216 LPDEQIRKAIKNGISKINIGTELRRA 241 (287)
T ss_dssp S-HHHHHHHHHTTEEEEEESHHHHHH
T ss_pred CCHHHHHHHHHcCceEEEEehHHHHH
Confidence 55 48999999999999999986543
No 305
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.36 E-value=0.0098 Score=59.28 Aligned_cols=68 Identities=26% Similarity=0.426 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.+..+.++|+|.|.+... -||. ...+..++++++..+ ++||++ |.|.|.+++..++.+|||+|.+|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a--~G~s---~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSS--QGNS---IYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHCCCCEEEEecC--CCCc---hHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 45667788999999999754 3553 234678888888753 577766 88989999999999999999864
No 306
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.33 E-value=0.024 Score=51.49 Aligned_cols=86 Identities=29% Similarity=0.358 Sum_probs=63.4
Q ss_pred HHHHHHHHhC-C--CEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhC-CCCCcEEeecCc
Q 020013 100 EELVLEAHSA-G--VKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIG-DRDIPIIAAGGI 175 (332)
Q Consensus 100 ~~~i~~~~~~-g--~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iPviaaGGI 175 (332)
.+-++++|+. + .++=..|.|.+++.+|.++|+|.|.++++. ..-++++++.+. ..++-+=++|||
T Consensus 175 ~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~-----------~e~~~~av~~l~~~~~~~lEaSGgI 243 (280)
T COG0157 175 TEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMS-----------PEELKEAVKLLGLAGRALLEASGGI 243 (280)
T ss_pred HHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCC-----------HHHHHHHHHHhccCCceEEEEeCCC
Confidence 3456666653 2 457788999999999999999999997651 123334444321 114567799999
Q ss_pred CCHHHHHHHHHcCcceeeeccc
Q 020013 176 VDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 176 ~~~~~v~~al~~GA~gV~~GT~ 197 (332)
+.+++.++...|.|-+.+|.-
T Consensus 244 -t~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 244 -TLENIREYAETGVDVISVGAL 264 (280)
T ss_pred -CHHHHHHHhhcCCCEEEeCcc
Confidence 999999999999999998865
No 307
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.31 E-value=0.013 Score=53.24 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=60.2
Q ss_pred CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 119 SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 119 s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
..+.|+...+.|++.+=+.--++ |.. ....++.++++ + ++||-..|||.+ +++..+|.+||+-|++||..
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg-g~~----~n~~~i~~i~~-~---~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~A 114 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA-DDA----SLAAALEALRA-Y---PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYV 114 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC-CCc----ccHHHHHHHHh-C---CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHH
Confidence 34566667777777665433322 221 23677888877 5 699999999985 99999999999999999998
Q ss_pred ccCccCCCCHHHHHHHhcC
Q 020013 199 VASEESYAHPEYKRKLVEM 217 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~~ 217 (332)
+...|- .++..++.+.+-
T Consensus 115 v~~~~~-~p~~v~~~~~~~ 132 (262)
T PLN02446 115 FRDGQI-DLERLKDLVRLV 132 (262)
T ss_pred HhCCCC-CHHHHHHHHHHh
Confidence 876321 123344444443
No 308
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.29 E-value=0.76 Score=43.70 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=106.5
Q ss_pred CCccc--eecCCCCCCCCcHHHHHHHHhC---CCceeecCCCC---CCH-------HHHHHHHHHHHhhcCCcEEEEeec
Q 020013 8 GFEYG--IVQAPLGPDISGPELVAAVANA---GGLGLLRAPDW---EAP-------DYLRDLIRKTRSLTERPFGVGVVL 72 (332)
Q Consensus 8 ~~~~P--ii~apM~~g~s~~~la~avs~a---GglG~i~~~~~---~~~-------e~~~~~i~~~r~~~~~p~gvnl~~ 72 (332)
|-+.| +|.+|-+ +-+++.+..+++. -|..++..+.| .+| ++-.++++++++.++.|+-.-++-
T Consensus 97 Gg~~~l~vIAGPCs--IEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d 174 (352)
T PRK13396 97 GENHPVVVVAGPCS--VENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMD 174 (352)
T ss_pred cCCCeEEEEEeCCc--ccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 43454 6777764 7777766555532 34555532111 111 334556677777667776655543
Q ss_pred CCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEec---CCHHHHHHHH----HcCCC-EEEEe-cC---
Q 020013 73 AFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQV---GSFDEARKAV----NAGVD-AIIVQ-GR--- 139 (332)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v---~s~~~a~~a~----~~g~D-~ivv~-G~--- 139 (332)
.+.++.+.+. +|+++++... ...++++.+-+.|.+|+.+- .+++|...+. ..|-+ .++++ |.
T Consensus 175 ----~~~v~~~~~~-~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf 249 (352)
T PRK13396 175 ----AADLEKIAEV-ADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTF 249 (352)
T ss_pred ----HHHHHHHHhh-CCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccC
Confidence 5778888777 9999997443 23467777777899988653 3777766554 34664 55553 22
Q ss_pred CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCC--HHHHHHHHHcCcceeeeccc
Q 020013 140 EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVD--ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 140 eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~--~~~v~~al~~GA~gV~~GT~ 197 (332)
+. ++. .....+..++.+++.. ++|||+.- |-++ +.-..+++++||||+++=+-
T Consensus 250 ~s-~y~-~~~~dl~ai~~lk~~~---~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 250 DR-QYT-RNTLDLSVIPVLRSLT---HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred cC-CCC-CCCcCHHHHHHHHHhh---CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence 11 111 1234577788887765 68998763 3322 22345677899999998444
No 309
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.29 E-value=0.1 Score=47.07 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=70.3
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHH---HHHHHhCCCEEEEecCCHHHHH----------HHHHc---C----C
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEEL---VLEAHSAGVKVVPQVGSFDEAR----------KAVNA---G----V 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~---i~~~~~~g~~v~~~v~s~~~a~----------~a~~~---g----~ 131 (332)
..+.+.+.|++.+.++ |+.....+ ++.+.+.|+..+..++...+.+ .-.+. + .
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~ 155 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLA 155 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhc
Confidence 4677888999999885 33322222 2345678998888887433222 11111 1 1
Q ss_pred CEEEE-ecCCCCcccCCCCchhh----hHHHHHHHhCC------CCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccc
Q 020013 132 DAIIV-QGREAGGHVIGQDGLIS----LLPMVVDLIGD------RDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFV 199 (332)
Q Consensus 132 D~ivv-~G~eaGGh~~~~~~~~~----ll~~i~~~~~~------~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl 199 (332)
..+++ +...+-|. |...+.. ....+++.+.. .++||+..|+| +++|+.+++..+ .||+.+|++-+
T Consensus 156 ~~iIAYEPvWAIGt--G~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV-~~~N~~~l~~~~~vDG~LVG~Asl 232 (242)
T cd00311 156 PVVIAYEPVWAIGT--GKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSV-NPENAAELLAQPDIDGVLVGGASL 232 (242)
T ss_pred CeEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCC-CHHHHHHHhcCCCCCEEEeehHhh
Confidence 23443 33333332 1111222 22222322211 25899999999 779999999998 99999999977
Q ss_pred c
Q 020013 200 A 200 (332)
Q Consensus 200 ~ 200 (332)
-
T Consensus 233 ~ 233 (242)
T cd00311 233 K 233 (242)
T ss_pred C
Confidence 3
No 310
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.29 E-value=0.44 Score=45.57 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=87.9
Q ss_pred HHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEec---CCHHHHHHHH--
Q 020013 54 LIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQV---GSFDEARKAV-- 127 (332)
Q Consensus 54 ~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v---~s~~~a~~a~-- 127 (332)
++.+.++..+.||-.-++ +...++.+.+. +|+++++... ...++++.+-+.|.+|+.+- .++++...+.
T Consensus 173 ~L~~~~~~~Gl~~~t~v~----d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 247 (360)
T PRK12595 173 ILKQVADEYGLAVISEIV----NPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEY 247 (360)
T ss_pred HHHHHHHHcCCCEEEeeC----CHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHH
Confidence 444444445556555443 36778888888 9999997433 23467888878899988654 3777766554
Q ss_pred --HcCC-CEEEEe-cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcC-C----HHHHHHHHHcCcceeeeccc
Q 020013 128 --NAGV-DAIIVQ-GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIV-D----ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 128 --~~g~-D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~-~----~~~v~~al~~GA~gV~~GT~ 197 (332)
..|. +.++++ |...=-..+-....+..++.+++.. ++||+.. .-.. + +.-..+++++||||+++=+-
T Consensus 248 i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~---~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H 324 (360)
T PRK12595 248 IMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET---HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVH 324 (360)
T ss_pred HHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh---CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEec
Confidence 4566 566665 5421000001123567788887766 7999993 2221 1 12345678899999999888
Q ss_pred cccCccCC
Q 020013 198 FVASEESY 205 (332)
Q Consensus 198 fl~t~Es~ 205 (332)
| .++..
T Consensus 325 ~--dp~~a 330 (360)
T PRK12595 325 P--DPAVA 330 (360)
T ss_pred C--CCCCC
Confidence 7 44443
No 311
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.25 E-value=0.44 Score=42.92 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=89.2
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeec----------CC--CCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCC-C
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLR----------AP--DWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFP-H 76 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~----------~~--~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~-~ 76 (332)
-||+ |. ++-++-.|..+.++|.=.+.. .+ ...+.+++...++.++..+. .|+-+.+-.-.. .
T Consensus 12 ~~i~---~~-~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~ 87 (240)
T cd06556 12 ERFA---TL-TAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGA 87 (240)
T ss_pred CeEE---Ee-cCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC
Confidence 4665 32 567888888887776211111 11 12355666666666666554 577666533211 1
Q ss_pred ----HHHHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecCC------------------------HHHHHHHHH
Q 020013 77 ----NENIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGS------------------------FDEARKAVN 128 (332)
Q Consensus 77 ----~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~s------------------------~~~a~~a~~ 128 (332)
.+.++.+.+.|++.|.+--+....+.++.+++.++.|+.-+.. .+.++..++
T Consensus 88 ~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~ 167 (240)
T cd06556 88 PTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAP 167 (240)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHH
Confidence 2335667789999999853322234567778888888865442 233455678
Q ss_pred cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 129 AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 129 ~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+|+|.|++++. +...+.++.+.+ ++|++..|
T Consensus 168 AGAd~i~~e~~-----------~~e~~~~i~~~~---~~P~~~~g 198 (240)
T cd06556 168 AGADLIVMECV-----------PVELAKQITEAL---AIPLAGIG 198 (240)
T ss_pred cCCCEEEEcCC-----------CHHHHHHHHHhC---CCCEEEEe
Confidence 99999999532 356677888877 79988744
No 312
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.24 E-value=0.54 Score=42.41 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHhcCCcEEEEcc----CCCcHHHHHHHHh--CCCEEE-Ee----cCCHHHHH-HHHHcCCCEEEEecCCCCcccC
Q 020013 79 NIKAILSEKVAVLQVSW----GEYSEELVLEAHS--AGVKVV-PQ----VGSFDEAR-KAVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v~-~~----v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~ 146 (332)
.++.+.+.|+|.|.+++ |.-..+..+++.+ .+.++. +. +.++.++. .+.+.|+|.|+-. ||..
T Consensus 78 di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTS----Gg~~- 152 (248)
T PRK11572 78 DIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTS----GQQQ- 152 (248)
T ss_pred HHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECC----CCCC-
Confidence 46677888999998863 2222344444433 245543 32 34555544 4678899999874 3432
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
........|.++.+... +.-|++.||| +.+|+.+....|+..+=.
T Consensus 153 ~a~~g~~~L~~lv~~a~--~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 153 DAEQGLSLIMELIAASD--GPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred CHHHHHHHHHHHHHhcC--CCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 22233566666666553 2339999999 899999988888876654
No 313
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=96.21 E-value=0.23 Score=45.18 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=85.7
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEE-EeecC--C
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGV-GVVLA--F 74 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------~~-----~~~e~~~~~i~~~r~~~~~p~gv-nl~~~--~ 74 (332)
-||+ |. ..-|...|..+.++|. ..|..+ ++ .+.|++....+.++.....|+-| ++.+. .
T Consensus 15 ~~i~---m~-tayD~~sA~i~~~aG~-d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~ 89 (263)
T TIGR00222 15 EKIV---AI-TAYDYSFAKLFADAGV-DVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYA 89 (263)
T ss_pred CcEE---EE-eccCHHHHHHHHHcCC-CEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCC
Confidence 4665 32 4557777777777763 222111 12 45666666666666653444433 11111 0
Q ss_pred CCHH----HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec-------C----------CH-------HHHHHH
Q 020013 75 PHNE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV-------G----------SF-------DEARKA 126 (332)
Q Consensus 75 ~~~~----~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v-------~----------s~-------~~a~~a 126 (332)
..++ ..+.+.+.|++.|.+-.|....+.++.+.+.|++|+..+ . +. ++++..
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~ 169 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEGGEWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALAL 169 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHH
Confidence 1122 233444589999999755444567888889999998221 1 22 235566
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
+++|||.|++++. + ..+..++.+.+ ++|+|..|
T Consensus 170 e~AGA~~ivlE~v----------p-~~~a~~It~~l---~iP~iGIG 202 (263)
T TIGR00222 170 EEAGAQLLVLECV----------P-VELAAKITEAL---AIPVIGIG 202 (263)
T ss_pred HHcCCCEEEEcCC----------c-HHHHHHHHHhC---CCCEEeec
Confidence 7899999999653 2 35677888877 79998654
No 314
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.19 E-value=0.11 Score=51.19 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=78.8
Q ss_pred eecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhh-cCCcEEE-EeecCCCCHHHHHHHHhcCCcE
Q 020013 13 IVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSL-TERPFGV-GVVLAFPHNENIKAILSEKVAV 90 (332)
Q Consensus 13 ii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~-~~~p~gv-nl~~~~~~~~~~~~~~~~~~~~ 90 (332)
++.+.+..+-.+.+.+.++.++|.-.+.........+...+.++++|+. .+.|+.+ |+.. .+....+.+.|+|+
T Consensus 214 ~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t----~~~a~~l~~aGad~ 289 (450)
T TIGR01302 214 IVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT----AEQAKALIDAGADG 289 (450)
T ss_pred EEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHHhCCCE
Confidence 3445554222446777777777743332211111234566778888876 5788887 4433 56778888999999
Q ss_pred EEEcc--------------CCCc----HHHHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 91 LQVSW--------------GEYS----EELVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 91 I~~~~--------------g~~~----~~~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.++. |.+. .++.+.+++.+++|++ .+.+..++.+|+.+|+|+|.+
T Consensus 290 i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 290 LRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred EEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 96542 2111 2234445667899998 688999999999999999998
No 315
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.17 E-value=0.96 Score=41.02 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=101.7
Q ss_pred ceecCCCCCCCCcHHHHHHHH----hCC---CceeecCCCCC-----CH--------HHHHHHHHHHHhhcCCcEEEEee
Q 020013 12 GIVQAPLGPDISGPELVAAVA----NAG---GLGLLRAPDWE-----AP--------DYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs----~aG---glG~i~~~~~~-----~~--------e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
-+|.+|-. +-+.+.+..++ ++| +.|.+.-++|. +| ++=.++++++++.++.|+-.-++
T Consensus 12 ~~iAGPC~--vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~ 89 (264)
T PRK05198 12 FLIAGPCV--IESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLTDVH 89 (264)
T ss_pred EEEecCCc--ccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEEeC
Confidence 47778875 66666554444 333 35444331121 11 23356778888877777776655
Q ss_pred cCCCCHHHHHHHHhcCCcEEEEcc-CCCcHHHHHHHHhCCCEEEEe---cCCHHHHHH----HHHcCCCEEEE--ecCCC
Q 020013 72 LAFPHNENIKAILSEKVAVLQVSW-GEYSEELVLEAHSAGVKVVPQ---VGSFDEARK----AVNAGVDAIIV--QGREA 141 (332)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~I~~~~-g~~~~~~i~~~~~~g~~v~~~---v~s~~~a~~----a~~~g~D~ivv--~G~ea 141 (332)
- .++++.+.+. +|++++.. ..-.-++++.+-+.|.+|..+ ..++++-.. ....|-.-|++ .|...
T Consensus 90 ~----~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf 164 (264)
T PRK05198 90 E----PEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSF 164 (264)
T ss_pred C----HHHHHHHHhh-CcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence 4 6778888887 99999963 222336777777778888754 347776554 34567555555 35433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEee---------------cCcCC--HHHHHHHHHcCcceeee
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAA---------------GGIVD--ARGYVAALSLGAQGICL 194 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaa---------------GGI~~--~~~v~~al~~GA~gV~~ 194 (332)
|.. ....++..+|.+++ . ..|||.. ||-.+ +.-..+++++||||+.+
T Consensus 165 -~y~-r~~~D~~~vp~~k~-~---~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~i 228 (264)
T PRK05198 165 -GYN-NLVVDMRGLPIMRE-T---GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFI 228 (264)
T ss_pred -CCC-CeeechhhhHHHhh-C---CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 221 12245666776665 2 5899874 33311 11135778899999998
No 316
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=96.15 E-value=0.034 Score=51.90 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=59.4
Q ss_pred CEEEEecCCHH----HHHHHHHc---CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCHHH
Q 020013 111 VKVVPQVGSFD----EARKAVNA---GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDARG 180 (332)
Q Consensus 111 ~~v~~~v~s~~----~a~~a~~~---g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~~~ 180 (332)
.++...+.+.+ ++..+.+. ++|+|.++.... +. |. ...++.+++++++. .++.++++||| |.++
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~--~~-G~--~~~~~~~~~~~l~~~g~~~~~ieaSGgI-~~~~ 258 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSS--RR-GV--FRYLIREVRWALDIRGYKHVKIFVSGGL-DEED 258 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCC--CC-CC--HHHHHHHHHHHHHhCCCCCeEEEEeCCC-CHHH
Confidence 46666666554 66666655 489999987632 22 21 24445555555421 24679999999 9999
Q ss_pred HHHHHHcCcceeeeccccccC
Q 020013 181 YVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t 201 (332)
+.++.+.|+|.+-+||.+...
T Consensus 259 i~~~a~~gvD~isvGs~~~~~ 279 (302)
T cd01571 259 IKELEDVGVDAFGVGTAISKA 279 (302)
T ss_pred HHHHHHcCCCEEECCcccCCC
Confidence 999999999999999987543
No 317
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.15 E-value=0.021 Score=56.58 Aligned_cols=67 Identities=34% Similarity=0.522 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+.+....+.|+|.|+++... ||. .....+++++++... ++|||+ |.+.|.+++..++.+|||+|-+|
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~--g~~---~~~~~~i~~i~~~~~--~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH--GHQ---VKMISAIKAVRALDL--GVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC--CCc---HHHHHHHHHHHHHCC--CCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 44556778999999998764 554 455778888887653 689998 66779999999999999998743
No 318
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.036 Score=49.47 Aligned_cols=89 Identities=22% Similarity=0.354 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHcCCCEEEE---ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 118 GSFDEARKAVNAGVDAIIV---QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 118 ~s~~~a~~a~~~g~D~ivv---~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
...+.|++..+.|+..+=+ +|...|+. ....++.++.+.. ++||=..|||.|.+++..++.+|++-|.+
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~-----~n~~~i~~i~~~~---~~~vQvGGGIRs~~~v~~ll~~G~~rVii 103 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAGGP-----RNLEAIKEILEAT---DVPVQVGGGIRSLEDVEALLDAGVARVII 103 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccccCCc-----ccHHHHHHHHHhC---CCCEEeeCCcCCHHHHHHHHHCCCCEEEE
Confidence 3456677777778877654 45544332 2356788888877 79999999999999999999999999999
Q ss_pred ccccccCccCCCCHHHHHHHhcCCC
Q 020013 195 GTRFVASEESYAHPEYKRKLVEMDK 219 (332)
Q Consensus 195 GT~fl~t~Es~~~~~~k~~~~~~~~ 219 (332)
||.-+.. ++..|+.+.+-.+
T Consensus 104 Gt~av~~-----p~~v~~~~~~~g~ 123 (241)
T COG0106 104 GTAAVKN-----PDLVKELCEEYGD 123 (241)
T ss_pred ecceecC-----HHHHHHHHHHcCC
Confidence 9997544 4466777776653
No 319
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.12 E-value=0.54 Score=43.08 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=100.4
Q ss_pred ccceecCCCCCCCCcHHHHHHHH----hCCCceeecCC---------CCCC-HHHHHHHHHHHHhhcCCcEEEEeecCCC
Q 020013 10 EYGIVQAPLGPDISGPELVAAVA----NAGGLGLLRAP---------DWEA-PDYLRDLIRKTRSLTERPFGVGVVLAFP 75 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs----~aGglG~i~~~---------~~~~-~e~~~~~i~~~r~~~~~p~gvnl~~~~~ 75 (332)
+.-+|.+|-. +.+.+.+...+ ++| +.++..+ ++.. .++--++++++++..+.|+..-++-
T Consensus 27 ~~~~iaGPCs--ie~~~~~~~~A~~lk~~g-~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d--- 100 (266)
T PRK13398 27 EKIIIAGPCA--VESEEQMVKVAEKLKELG-VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD--- 100 (266)
T ss_pred CEEEEEeCCc--CCCHHHHHHHHHHHHHcC-CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC---
Confidence 3457778875 66665544444 444 3344321 1111 1122233444444455666655443
Q ss_pred CHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH----HcCC-CEEEEecCCCCcccC
Q 020013 76 HNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV----NAGV-DAIIVQGREAGGHVI 146 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~----~~g~-D~ivv~G~eaGGh~~ 146 (332)
...++.+.+. ++++.++... ...++++.+-+.|.+|+.+-+ ++++...+. ..|- +.+++ +.|+.+.
T Consensus 101 -~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~---~rG~~t~ 175 (266)
T PRK13398 101 -TRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLC---ERGIRTF 175 (266)
T ss_pred -hhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEE---ECCCCCC
Confidence 4567777777 8999987443 334677888778999987644 777766554 3465 45554 2344221
Q ss_pred CC----CchhhhHHHHHHHhCCCCCcEEee-c-CcCC----HHHHHHHHHcCcceeeeccccc
Q 020013 147 GQ----DGLISLLPMVVDLIGDRDIPIIAA-G-GIVD----ARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 147 ~~----~~~~~ll~~i~~~~~~~~iPviaa-G-GI~~----~~~v~~al~~GA~gV~~GT~fl 199 (332)
.. ...+..++.+++.. +.||+.. . +++. .....+++++||+|+++=+-|-
T Consensus 176 ~~Y~~~~vdl~~i~~lk~~~---~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 176 ETYTRNTLDLAAVAVIKELS---HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcc---CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 11 12355566666554 6899983 3 2321 4556788899999999855443
No 320
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.11 E-value=0.029 Score=49.62 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.+.|+...+.|+|+|-+.--+. .. ...+..+..+++.+ ++||+.-|+|.+...+..++.+|||+|.+++..+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~--~~---~g~~~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPK--YF---QGSLEDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCcc--cc---CCCHHHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 4567788899999997632211 00 12245667777766 7999999999898899999999999999998866
Q ss_pred c
Q 020013 200 A 200 (332)
Q Consensus 200 ~ 200 (332)
.
T Consensus 106 ~ 106 (217)
T cd00331 106 D 106 (217)
T ss_pred C
Confidence 4
No 321
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.10 E-value=0.13 Score=48.19 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=66.3
Q ss_pred HHHHHHHhcC-CcEEEEccCCCcHHHHHHHHhC----CCEEEEecCC----HHHHHHHHH--cCCCEEEEecCCCCcccC
Q 020013 78 ENIKAILSEK-VAVLQVSWGEYSEELVLEAHSA----GVKVVPQVGS----FDEARKAVN--AGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 78 ~~~~~~~~~~-~~~I~~~~g~~~~~~i~~~~~~----g~~v~~~v~s----~~~a~~a~~--~g~D~ivv~G~eaGGh~~ 146 (332)
+....+.+.+ .-+++=++ .++++.+.+++. +-.+...+++ .+.+....+ .|+|+|+++-. =||.
T Consensus 61 ~mA~~la~~g~~~~iHk~~--~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~A--hGhs- 135 (346)
T PRK05096 61 EMAKALASFDILTAVHKHY--SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVA--NGYS- 135 (346)
T ss_pred HHHHHHHHCCCeEEEecCC--CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECC--CCcH-
Confidence 3333344433 34444443 345555555432 2233334432 233444555 59999999644 2453
Q ss_pred CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 147 GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 147 ~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
......++.+++.++ +++ |.+|.|.|++.+.+++.+|||+|-+|
T Consensus 136 --~~~i~~ik~ik~~~P--~~~-vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 136 --EHFVQFVAKAREAWP--DKT-ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred --HHHHHHHHHHHHhCC--CCc-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 345777888888764 566 55799999999999999999998654
No 322
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.088 Score=46.08 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCCCEEE---EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAGVKVV---PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g~~v~---~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
...+.+++.|.+.|.+.+..+ +.+.++.+++.--.++ .+|-++++++.+.++|+++++--|. .-+
T Consensus 29 ~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~-----------~~e 97 (211)
T COG0800 29 PLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGL-----------NPE 97 (211)
T ss_pred HHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCC-----------CHH
Confidence 345677889999999986543 3467777765422333 3567899999999999999975221 123
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE 216 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~ 216 (332)
+++...+ .++|++- |+.|+..+..++++|++.+= ++.-|......|.+.+.-
T Consensus 98 v~~~a~~----~~ip~~P--G~~TptEi~~Ale~G~~~lK-----~FPa~~~Gg~~~~ka~~g 149 (211)
T COG0800 98 VAKAANR----YGIPYIP--GVATPTEIMAALELGASALK-----FFPAEVVGGPAMLKALAG 149 (211)
T ss_pred HHHHHHh----CCCcccC--CCCCHHHHHHHHHcChhhee-----ecCccccCcHHHHHHHcC
Confidence 3333322 2688764 88899999999999999876 345555556677666654
No 323
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.02 E-value=0.35 Score=45.64 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.+..+.++|+|+|++.-. .||. .....+++++++..+ ++||++ |.+.+.+++..++.+|||+|.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~--~G~~---~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSA--HGHS---VYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECC--CCCc---HHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 35566778899999998542 2332 234667777777652 478877 88889999999999999999984
No 324
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.01 E-value=0.59 Score=42.70 Aligned_cols=150 Identities=14% Similarity=0.138 Sum_probs=89.0
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC---------C----CCCCHHHHHHHHHHHHhhcCCc-EEEEe
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA---------P----DWEAPDYLRDLIRKTRSLTERP-FGVGV 70 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~---------~----~~~~~e~~~~~i~~~r~~~~~p-~gvnl 70 (332)
++..-..||+ |. +.-+...+..+.++|. ..+.. + ...+.+++....+.++..++.| +-+.+
T Consensus 9 ~~~~~g~~i~---~~-tayD~~sArl~e~aG~-d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~ 83 (264)
T PRK00311 9 KMKQEGEKIV---ML-TAYDYPFAKLFDEAGV-DVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM 83 (264)
T ss_pred HHHhCCCCEE---EE-eCCCHHHHHHHHHcCC-CEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC
Confidence 3443335665 32 4668888887777763 11111 1 1235566666666666555665 34444
Q ss_pred ec-CC-CC-HH----HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEec-----------------CC-------
Q 020013 71 VL-AF-PH-NE----NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV-----------------GS------- 119 (332)
Q Consensus 71 ~~-~~-~~-~~----~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v-----------------~s------- 119 (332)
-+ .. .. ++ ..+.+.+.|++.|.+--|....+.++.+.+.|++|+..+ .+
T Consensus 84 pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~ 163 (264)
T PRK00311 84 PFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKL 163 (264)
T ss_pred CCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHH
Confidence 21 11 11 11 234445589999999644334567888888999986221 12
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.+.++..+++|||.|++++. +. .+..++.+.+ ++|+|..|
T Consensus 164 i~ra~a~~eAGA~~i~lE~v----------~~-~~~~~i~~~l---~iP~igiG 203 (264)
T PRK00311 164 LEDAKALEEAGAFALVLECV----------PA-ELAKEITEAL---SIPTIGIG 203 (264)
T ss_pred HHHHHHHHHCCCCEEEEcCC----------CH-HHHHHHHHhC---CCCEEEec
Confidence 23445567899999999653 22 5677888877 79998754
No 325
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.99 E-value=0.14 Score=45.96 Aligned_cols=89 Identities=16% Similarity=0.271 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCC--CCHHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEE--ec
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAF--PHNENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVP--QV 117 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~--~~~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~--~v 117 (332)
.+|+.+.+.++.+++ .+.|+.+.+-... ...+..+.+.+.|+|.|+.+.+.+ ..+.++.++ .+++|+. .+
T Consensus 123 ~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI 200 (233)
T cd02911 123 KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV 200 (233)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc
Confidence 358889999999987 5888888765433 224555677789999998864332 124555554 5688875 47
Q ss_pred CCHHHHHHHHHcCCCEEEE
Q 020013 118 GSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 118 ~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+++.+..+.|+|+|-+
T Consensus 201 ~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 201 TTIESAKEMFSYGADMVSV 219 (233)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8999999999999999988
No 326
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.98 E-value=0.13 Score=51.48 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
+.+..+.++|+|+|++. .+=||. ......++.+++..+ +--.|.+|-|.+++++..++.+|||++.+
T Consensus 245 ~ra~~Lv~aGvd~i~vd--~a~g~~---~~~~~~i~~ir~~~~--~~~~V~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 245 ERVPALVEAGADVLCID--SSEGYS---EWQKRTLDWIREKYG--DSVKVGAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred HHHHHHHHhCCCeEeec--Cccccc---HHHHHHHHHHHHhCC--CCceEEeccccCHHHHHHHHHcCCCEEEE
Confidence 44566778999999996 333443 233667778877652 11357789999999999999999999988
No 327
>PRK14565 triosephosphate isomerase; Provisional
Probab=95.94 E-value=0.086 Score=47.32 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHHHH----HHHHhCCCEEEEecCCHHHHHHH--------------HHcCCC
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEELV----LEAHSAGVKVVPQVGSFDEARKA--------------VNAGVD 132 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~~i----~~~~~~g~~v~~~v~s~~~a~~a--------------~~~g~D 132 (332)
-..+.+.+.|++.+.++ |++ ..+.+ +.+.+.|+..+..++...+.+.+ +...-+
T Consensus 76 vS~~mLkd~G~~~viiGHSERR~~f~E-td~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~ 154 (237)
T PRK14565 76 ISAKMLKECGCSYVILGHSERRSTFHE-TDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGE 154 (237)
T ss_pred cCHHHHHHcCCCEEEECcccccCcCCc-CHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCC
Confidence 34667888999999875 333 33444 55667899888888753332221 111123
Q ss_pred EEEE-ecCCCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 133 AIIV-QGREAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 133 ~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
.+++ +...+-|. |...+...+.++...++. .+++|+..|+| +++|+.+.++. +.||+.+|++-+
T Consensus 155 ivIAYEPvWAIGt--G~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl 222 (237)
T PRK14565 155 FIIAYEPVWAIGG--STIPSNDAIAEAFEIIRSYDSKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASL 222 (237)
T ss_pred EEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHhCCCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhh
Confidence 4443 33334332 222333333333333221 26899999999 89999998874 999999999977
No 328
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=95.91 E-value=0.037 Score=52.99 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=53.0
Q ss_pred HHHHHcCCCEEEEecCC-CCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccC
Q 020013 124 RKAVNAGVDAIIVQGRE-AGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVAS 201 (332)
Q Consensus 124 ~~a~~~g~D~ivv~G~e-aGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t 201 (332)
+.+.+.|+|+|=+.... .+++ .....+..++++.+ ++||++.|++ +++.+.++++-| ||.|.||..+++.
T Consensus 256 ~~L~~~giD~i~vs~~~~~~~~----~~~~~~~~~ik~~~---~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 256 EQLGKRGIAYLHMSEPDWAGGE----PYSDAFREKVRARF---HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHHHcCCCEEEeccccccCCc----cccHHHHHHHHHHC---CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC
Confidence 44566799999875421 1111 11233445667666 7899999998 899999999988 9999999999987
Q ss_pred cc
Q 020013 202 EE 203 (332)
Q Consensus 202 ~E 203 (332)
++
T Consensus 328 Pd 329 (362)
T PRK10605 328 PD 329 (362)
T ss_pred cc
Confidence 64
No 329
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.91 E-value=0.065 Score=44.03 Aligned_cols=81 Identities=30% Similarity=0.496 Sum_probs=56.3
Q ss_pred HHHHhCCCEEEE--ecCCHHHHH-HHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCC
Q 020013 104 LEAHSAGVKVVP--QVGSFDEAR-KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVD 177 (332)
Q Consensus 104 ~~~~~~g~~v~~--~v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~ 177 (332)
+.+++.|+.|+. ...|++|+. .|.+..+|.|.+.+.. |+|. .+++.+.+.+.+ .++.| ..||+-.
T Consensus 34 ~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~-g~h~-------~l~~~lve~lre~G~~~i~v-~~GGvip 104 (143)
T COG2185 34 RALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLD-GGHL-------TLVPGLVEALREAGVEDILV-VVGGVIP 104 (143)
T ss_pred HHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEecc-chHH-------HHHHHHHHHHHHhCCcceEE-eecCccC
Confidence 456778888874 355777665 4568899999997653 4553 456666665532 24554 5566668
Q ss_pred HHHHHHHHHcCcceee
Q 020013 178 ARGYVAALSLGAQGIC 193 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~ 193 (332)
+++..+..++|.+++.
T Consensus 105 ~~d~~~l~~~G~~~if 120 (143)
T COG2185 105 PGDYQELKEMGVDRIF 120 (143)
T ss_pred chhHHHHHHhCcceee
Confidence 8998888889999876
No 330
>PRK01362 putative translaldolase; Provisional
Probab=95.85 E-value=0.45 Score=42.12 Aligned_cols=137 Identities=18% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHH---HHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKA---ILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
+.++++++..+.++-+.+...+ .++.++. +.+....++. +..-..--+.++.+++.|+++-.+ +-|.+++..+.
T Consensus 41 ~~~~~i~~~i~g~vs~qv~~~d-~~~m~~~a~~l~~~~~~i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa 119 (214)
T PRK01362 41 EVIKEICSIVDGPVSAEVIALD-AEGMIKEGRELAKIAPNVVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSANQALLAA 119 (214)
T ss_pred HHHHHHHHhcCCCEEEEEeeCC-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHHHHHHHH
Confidence 3455555555677777766432 2333332 3333444433 332111125677888889998755 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCCC-CcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDRD-IPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~-iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
++|+|+|-. -|+ +--|+ ..+.++.++.+.+...+ -+-|.+..+.+.+++.++..+|||.+-++
T Consensus 120 ~aGa~yispyvgRi~d~g~-----dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 120 KAGATYVSPFVGRLDDIGT-----DGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIP 185 (214)
T ss_pred hcCCcEEEeecchHhhcCC-----CHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecC
Confidence 999999875 233 11111 23566666666553212 35666778889999999999999988764
No 331
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.83 E-value=0.98 Score=42.35 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=84.9
Q ss_pred CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE-----------------ec
Q 020013 63 ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP-----------------QV 117 (332)
Q Consensus 63 ~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~-----------------~v 117 (332)
..|+.+++=-- .+.+.+..+++.|...|-+.....| .++++.++..|+.|=. ..
T Consensus 85 ~VPV~lHLDHg-~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~ 163 (321)
T PRK07084 85 PIPIVLHLDHG-DSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTY 163 (321)
T ss_pred CCcEEEECCCC-CCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCccccc
Confidence 35666654221 2356677778888887776533222 2345566666665421 13
Q ss_pred CCHHHHHHHHH-cCCCEEEE-ecCCCCcccC-----CCCchhhhHHHHHHHhCCCCCcEEeecCcCCH------------
Q 020013 118 GSFDEARKAVN-AGVDAIIV-QGREAGGHVI-----GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA------------ 178 (332)
Q Consensus 118 ~s~~~a~~a~~-~g~D~ivv-~G~eaGGh~~-----~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~------------ 178 (332)
+++++|+...+ .|+|.+-+ .|.-=|-... .+.-.+.++.++.+.+. ++|++.-||=+.+
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~--~vPLVLHGgSg~~~~~~~~~~~~g~ 241 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP--GFPIVLHGSSSVPQEYVKTINEYGG 241 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC--CCCEEEeCCCCCcHHHHHHHHHhcC
Confidence 57888888765 69999876 2332122111 12245889999998873 5999988865443
Q ss_pred ----------HHHHHHHHcCcceeeecccccc
Q 020013 179 ----------RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 179 ----------~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++.+++.+|..-|=++|.+..
T Consensus 242 ~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~ 273 (321)
T PRK07084 242 KLKDAIGIPEEQLRKAAKSAVCKINIDSDGRL 273 (321)
T ss_pred ccccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence 7788888888888888777543
No 332
>PTZ00333 triosephosphate isomerase; Provisional
Probab=95.82 E-value=0.29 Score=44.54 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHHH---HHHHHhCCCEEEEecCCHH--------------HHHHHHHcCCC-
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEEL---VLEAHSAGVKVVPQVGSFD--------------EARKAVNAGVD- 132 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~~---i~~~~~~g~~v~~~v~s~~--------------~a~~a~~~g~D- 132 (332)
-..+.+.+.|++++.++ |+.....+ ++.+.+.|+..+..++... +.....+ +.+
T Consensus 80 vS~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~-~v~~ 158 (255)
T PTZ00333 80 ISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVK-KVSD 158 (255)
T ss_pred CCHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHh-cCCH
Confidence 34667888999999885 34333333 2345668998887777432 2222222 222
Q ss_pred -----EEEE-ecCCCCcccCCCCch-------hhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeee
Q 020013 133 -----AIIV-QGREAGGHVIGQDGL-------ISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICL 194 (332)
Q Consensus 133 -----~ivv-~G~eaGGh~~~~~~~-------~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~ 194 (332)
.+++ +...+-|. +...+ ...+++... ... ..++||+..|+| +++++.+.+. .+.||+.+
T Consensus 159 ~~~~~iiIAYEPvWAIGt--g~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV-~~~N~~~l~~~~~vDG~Lv 235 (255)
T PTZ00333 159 EAWDNIVIAYEPVWAIGT--GKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSV-NEKNCKELIKQPDIDGFLV 235 (255)
T ss_pred HHcceEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCC-CHHHHHHHhcCCCCCEEEE
Confidence 3444 33344332 11112 222332111 111 125899999999 8899988765 68999999
Q ss_pred ccccc
Q 020013 195 GTRFV 199 (332)
Q Consensus 195 GT~fl 199 (332)
|++-+
T Consensus 236 G~asl 240 (255)
T PTZ00333 236 GGASL 240 (255)
T ss_pred ehHhh
Confidence 99876
No 333
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.81 E-value=0.47 Score=41.50 Aligned_cols=159 Identities=25% Similarity=0.301 Sum_probs=83.7
Q ss_pred CcHHHHHHHHhCCCce--e---ecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCC-----C--------HHHHHHHH
Q 020013 23 SGPELVAAVANAGGLG--L---LRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFP-----H--------NENIKAIL 84 (332)
Q Consensus 23 s~~~la~avs~aGglG--~---i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~-----~--------~~~~~~~~ 84 (332)
.+++-+.++.+.|.=- + +..++ .||.. ..++.+++..+.| +++++.+- + .+.++.+.
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l~~GG-lTPS~--g~i~~~~~~~~ip--v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~ 82 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNLEVGG-LTPSL--GLIRQAREAVDIP--VHVMIRPRGGDFVYSDEEIEIMKEDIRMLR 82 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTGGGT--B---H--HHHHHHHHHTTSE--EEEE--SSSS-S---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCccCCC-cCcCH--HHHHHHHhhcCCc--eEEEECCCCCCccCCHHHHHHHHHHHHHHH
Confidence 4566666666666411 1 12222 35532 4455565554555 55555321 0 23456778
Q ss_pred hcCCcEEEEcc----CCCcHHHHHHHHh--CCCEEE-Ee----cCCHHHHH-HHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 85 SEKVAVLQVSW----GEYSEELVLEAHS--AGVKVV-PQ----VGSFDEAR-KAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 85 ~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v~-~~----v~s~~~a~-~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+.|+|.+.+++ |.-..+..+.+.+ .+.++. +- +.++.++. .+.+.|+|.|+-.| |.. .....+
T Consensus 83 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG----g~~-~a~~g~ 157 (201)
T PF03932_consen 83 ELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG----GAP-TALEGI 157 (201)
T ss_dssp HTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST----TSS-STTTCH
T ss_pred HcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC----CCC-CHHHHH
Confidence 89999998864 2223344444433 366654 32 34555554 45578999998854 332 222235
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceee
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGIC 193 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~ 193 (332)
..|.++.+..+. ++-|++.||| +.+|+.+.++ .|+..+=
T Consensus 158 ~~L~~lv~~a~~-~i~Im~GgGv-~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 158 ENLKELVEQAKG-RIEIMPGGGV-RAENVPELVEETGVREIH 197 (201)
T ss_dssp HHHHHHHHHHTT-SSEEEEESS---TTTHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHcCC-CcEEEecCCC-CHHHHHHHHHhhCCeEEe
Confidence 566666665543 6889999999 8899999988 8877654
No 334
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.79 E-value=0.48 Score=42.80 Aligned_cols=170 Identities=22% Similarity=0.300 Sum_probs=97.0
Q ss_pred ceecCCCCCCCCcHHHHHHHHh---CCCceeecCCCC---CCH-------HHHHHHHHHHHhhcCCcEEEEeecCCCCHH
Q 020013 12 GIVQAPLGPDISGPELVAAVAN---AGGLGLLRAPDW---EAP-------DYLRDLIRKTRSLTERPFGVGVVLAFPHNE 78 (332)
Q Consensus 12 Pii~apM~~g~s~~~la~avs~---aGglG~i~~~~~---~~~-------e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~ 78 (332)
-+|.+|-+ +-+-|.+..+++ ..|.-++..+-| .+| ++-.++++++++.++.|+-.-++- .+
T Consensus 47 ~viAGPCs--vEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~----~~ 120 (286)
T COG2876 47 RVIAGPCS--VESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD----VR 120 (286)
T ss_pred EEEecCcc--cCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC----HH
Confidence 46677775 566666655553 234444432111 122 233456677777777877766654 57
Q ss_pred HHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCCCEEEEe---cCCHHHHHHH----HHcCCCEEEE--ec---CCCCccc
Q 020013 79 NIKAILSEKVAVLQVSWGEY-SEELVLEAHSAGVKVVPQ---VGSFDEARKA----VNAGVDAIIV--QG---REAGGHV 145 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g~~v~~~---v~s~~~a~~a----~~~g~D~ivv--~G---~eaGGh~ 145 (332)
.++.+.+. +|+++++.... .-++.+.+-+.+.+|+.+ -.|.+|-..| ...|..-||+ .| +|- +++
T Consensus 121 ~~e~~~~y-~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~-~TR 198 (286)
T COG2876 121 DVEAAAEY-ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEK-ATR 198 (286)
T ss_pred HHHHHHhh-hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccc-ccc
Confidence 78888887 99999875431 113444444456777754 3477765544 3456554544 22 222 121
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH-HH-----HHHHHHcCcceeee
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA-RG-----YVAALSLGAQGICL 194 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~-~~-----v~~al~~GA~gV~~ 194 (332)
..-+++.++.+++.. +.|||+.=-=.++ ++ ..+++++||||+++
T Consensus 199 --ntLDi~aV~~~kq~T---HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmi 248 (286)
T COG2876 199 --NTLDISAVPILKQET---HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMI 248 (286)
T ss_pred --ceechHHHHHHHhhc---CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEE
Confidence 123366677777655 7999975322222 22 35677899999987
No 335
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.75 E-value=0.23 Score=48.42 Aligned_cols=193 Identities=15% Similarity=0.215 Sum_probs=115.5
Q ss_pred hhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecCCC-CCCH--HHHHHHHHHHHhh-cCCcEEEEeecCCCCH--H
Q 020013 5 GMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPD-WEAP--DYLRDLIRKTRSL-TERPFGVGVVLAFPHN--E 78 (332)
Q Consensus 5 ~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~-~~~~--e~~~~~i~~~r~~-~~~p~gvnl~~~~~~~--~ 78 (332)
+.+.++.-.+.+|+. .+.++.+..-+-..|+ .+....- +.++ .....+..-+|.+ ....|||.|-...++. .
T Consensus 259 k~lD~r~K~~LaPLT-TvGNLPFRRlCk~lGA-DvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~k 336 (614)
T KOG2333|consen 259 KLLDFRDKKYLAPLT-TVGNLPFRRLCKKLGA-DVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAK 336 (614)
T ss_pred cccccccceeecccc-ccCCccHHHHHHHhCC-ccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHH
Confidence 345666778899998 7889998776655553 2211100 0000 0000111222332 3457999998877641 1
Q ss_pred HHHHHH-hcCCcEEEEccCCCc----------------HHHHHHHHh-----CCCEEEEecCC-------H-HH-HHHHH
Q 020013 79 NIKAIL-SEKVAVLQVSWGEYS----------------EELVLEAHS-----AGVKVVPQVGS-------F-DE-ARKAV 127 (332)
Q Consensus 79 ~~~~~~-~~~~~~I~~~~g~~~----------------~~~i~~~~~-----~g~~v~~~v~s-------~-~~-a~~a~ 127 (332)
..+++. ...+|+|.++.|+|- ..+.+.++. .++++-+++.+ + .+ .....
T Consensus 337 aaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~ 416 (614)
T KOG2333|consen 337 AAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIV 416 (614)
T ss_pred HHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHh
Confidence 223222 346889988877742 122232322 24465555421 1 11 22333
Q ss_pred -HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC--cceeeeccccccC
Q 020013 128 -NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG--AQGICLGTRFVAS 201 (332)
Q Consensus 128 -~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G--A~gV~~GT~fl~t 201 (332)
+.|+++|.+.|+.-- .+......|..+.++.+..+. .+|+|..|-|-+.+|..+.+..+ .++|+++..-|.-
T Consensus 417 newg~savTlHGRSRq-QRYTK~AnWdYi~e~a~~ak~-~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIK 491 (614)
T KOG2333|consen 417 NEWGASAVTLHGRSRQ-QRYTKSANWDYIEECADKAKS-ALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIK 491 (614)
T ss_pred hccCcceEEecCchhh-hhhhcccChHHHHHHHHhccc-CceeEecCccccHHHHHHHhhcCCCcceEEeecccccc
Confidence 789999999876211 112334679999999988752 48999999999999998888876 8999999876544
No 336
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.75 E-value=0.098 Score=42.64 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=51.6
Q ss_pred HHHhCCCEEEEe--cCCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCH
Q 020013 105 EAHSAGVKVVPQ--VGSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDA 178 (332)
Q Consensus 105 ~~~~~g~~v~~~--v~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~ 178 (332)
.++..|..|+.. -.++++ +..+.+.++|+|++.+.. + ..+..++++.+.++. .+++|++.|.+ ..
T Consensus 25 ~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~-~-------~~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~ 95 (132)
T TIGR00640 25 AYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA-G-------GHLTLVPALRKELDKLGRPDILVVVGGVI-PP 95 (132)
T ss_pred HHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch-h-------hhHHHHHHHHHHHHhcCCCCCEEEEeCCC-Ch
Confidence 456778887743 234544 466778899999985432 1 224455666555432 14666665556 56
Q ss_pred HHHHHHHHcCcceee
Q 020013 179 RGYVAALSLGAQGIC 193 (332)
Q Consensus 179 ~~v~~al~~GA~gV~ 193 (332)
++..++.++|.|++.
T Consensus 96 ~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 96 QDFDELKEMGVAEIF 110 (132)
T ss_pred HhHHHHHHCCCCEEE
Confidence 788999999998765
No 337
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=95.66 E-value=1.1 Score=42.46 Aligned_cols=177 Identities=15% Similarity=0.202 Sum_probs=108.4
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C----CCCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A----PDWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~----~~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+.+.++-+|. ..++|- . ..|...+.+...+..+.+.. +.|+.+++=-- .+.+.+..+++.|...|
T Consensus 24 N~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg-~~~e~i~~Ai~~GFtSV 102 (347)
T PRK13399 24 NVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHG-NSPATCQSAIRSGFTSV 102 (347)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCC-CCHHHHHHHHhcCCCEE
Confidence 355667766666552 233331 1 12334555666666665555 36887775322 23567888889999888
Q ss_pred EEccCCCc--------H-------HHHHHHHhCCCEEEE-----------------------------ecCCHHHHHHHH
Q 020013 92 QVSWGEYS--------E-------ELVLEAHSAGVKVVP-----------------------------QVGSFDEARKAV 127 (332)
Q Consensus 92 ~~~~g~~~--------~-------~~i~~~~~~g~~v~~-----------------------------~v~s~~~a~~a~ 127 (332)
-+.....| + ++++..+..|+.|=. ..+++++|....
T Consensus 103 MiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv 182 (347)
T PRK13399 103 MMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFV 182 (347)
T ss_pred EEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHH
Confidence 77633222 2 345556655654411 134688888876
Q ss_pred H-cCCCEEEE-ecCCCCcccC--CCC---chhhhHHHHHHHhCCCCCcEEeecCcCCH----------------------
Q 020013 128 N-AGVDAIIV-QGREAGGHVI--GQD---GLISLLPMVVDLIGDRDIPIIAAGGIVDA---------------------- 178 (332)
Q Consensus 128 ~-~g~D~ivv-~G~eaGGh~~--~~~---~~~~ll~~i~~~~~~~~iPviaaGGI~~~---------------------- 178 (332)
+ .|+|.+-+ .|.-=|-..+ .+. -.+.++.+|.+.++ ++|++.-||=+.+
T Consensus 183 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~--~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~ 260 (347)
T PRK13399 183 QRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP--NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPV 260 (347)
T ss_pred HHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC--CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCH
Confidence 4 69998875 2331111111 111 34778899988773 5999999987766
Q ss_pred HHHHHHHHcCcceeeecccccc
Q 020013 179 RGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~ 200 (332)
+++.+++.+|..-|=++|.+..
T Consensus 261 e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 261 EEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred HHHHHHHHCCCeEEEeChHHHH
Confidence 7788888888888888887543
No 338
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.18 Score=45.54 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcH----HHHHHHHhCCCEEEEecCCHHHHH---------------HHHHcCC-
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSE----ELVLEAHSAGVKVVPQVGSFDEAR---------------KAVNAGV- 131 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~----~~i~~~~~~g~~v~~~v~s~~~a~---------------~a~~~g~- 131 (332)
..+.+.+.|++.+.++ ++. .. .-++.+++.|...+..++...+.+ .+...++
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E-~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~ 158 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGE-TDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPE 158 (251)
T ss_pred CHHHHHHcCCCEEEECcccccccccc-chHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcc
Confidence 4567888999999885 232 23 234556778998888777443211 1223344
Q ss_pred --CEEEEecCCCCcccCCCC------chhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHH-HcCcceeeecccccc
Q 020013 132 --DAIIVQGREAGGHVIGQD------GLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAAL-SLGAQGICLGTRFVA 200 (332)
Q Consensus 132 --D~ivv~G~eaGGh~~~~~------~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al-~~GA~gV~~GT~fl~ 200 (332)
++|-.+...+=|.. .+. .....++.+....-. .++||+..|+| ++.++.+.+ ..++||+.+|++-+.
T Consensus 159 ~~~vIAYEPvWAIGTG-~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV-~~~N~~e~~~~~~idG~LVGgAslk 236 (251)
T COG0149 159 ANIVIAYEPVWAIGTG-KSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSV-KPGNAAELAAQPDIDGALVGGASLK 236 (251)
T ss_pred cCeEEEECCHHHhcCC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCc-ChhHHHHHhcCCCCCeEEEcceeec
Confidence 34444555554421 111 122333333332200 37999999999 677777766 489999999999775
Q ss_pred C
Q 020013 201 S 201 (332)
Q Consensus 201 t 201 (332)
.
T Consensus 237 a 237 (251)
T COG0149 237 A 237 (251)
T ss_pred c
Confidence 5
No 339
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.61 E-value=0.59 Score=40.43 Aligned_cols=100 Identities=20% Similarity=0.347 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHhCC--CEE-EEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHSAG--VKV-VPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLIS 153 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~~g--~~v-~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ 153 (332)
+.++.+++.|+++|++..-.+ ..++++.+++.. +.+ ...+.+.+++..+.+.|+|+|+. ||. + .+
T Consensus 28 ~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~------p~~-~----~~ 96 (187)
T PRK07455 28 QMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFT------PHV-D----PE 96 (187)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEEC------CCC-C----HH
Confidence 456778889999999964332 346666665532 222 23455679999999999999987 453 2 12
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++ ++... +++.+. | +.|+.++.++...|||-|-+
T Consensus 97 ~~~-~~~~~---~~~~i~-G-~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 97 LIE-AAVAQ---DIPIIP-G-ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred HHH-HHHHc---CCCEEc-C-cCCHHHHHHHHHCCCCEEEE
Confidence 222 23333 566554 4 89999999999999999886
No 340
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=95.61 E-value=0.6 Score=41.29 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHH---HHHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIK---AILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~---~~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
+.++++++..+.++-+.++..+ .++.++ .+.+....++. +..-..--+.++.+++.|+++-.+ +-|.+++..+.
T Consensus 41 ~~~~~i~~~~~g~vs~qv~~~~-~~~mi~~a~~l~~~~~~i~iKIP~T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa 119 (213)
T TIGR00875 41 EVLKEIQEAVEGPVSAETISLD-AEGMVEEAKELAKLAPNIVVKIPMTSEGLKAVKILKKEGIKTNVTLVFSAAQALLAA 119 (213)
T ss_pred HHHHHHHHhcCCcEEEEEeeCC-HHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHH
Confidence 3445555555667777765432 233333 23333444433 332111135677888899998755 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCC--CCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGD--RDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~--~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
++|+|+|-. -|+ +.-|+ ..+.++.++.+.++. .+.. |.+..+.+.+++.++..+|+|.|-+.-
T Consensus 120 ~aGa~yispyvgRi~d~g~-----dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 120 KAGATYVSPFVGRLDDIGG-----DGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHVLEAALIGADIATMPL 186 (213)
T ss_pred HcCCCEEEeecchHHHcCC-----CHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHHHHHHHcCCCEEEcCH
Confidence 999999875 333 11122 235666666665432 2455 555667799999999999999998643
No 341
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.58 E-value=0.31 Score=42.86 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEccCCC-cHHHHHHHHh-CCC--EEE-EecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchh
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-SEELVLEAHS-AGV--KVV-PQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLI 152 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~~~~i~~~~~-~g~--~v~-~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~ 152 (332)
+.++.+.+.|+..+++.+-.+ ..+.++.+++ .+. .+. .++.+.+++..+.++|+|+++. +|. ..
T Consensus 26 ~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs------p~~-----~~ 94 (206)
T PRK09140 26 AHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT------PNT-----DP 94 (206)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC------CCC-----CH
Confidence 446677888999999875432 2345666654 342 332 4577899999999999999987 221 12
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.++.... .. ++|++.. +.|++++.++..+|||-+.+
T Consensus 95 ~v~~~~~-~~---~~~~~~G--~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 95 EVIRRAV-AL---GMVVMPG--VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHH-HC---CCcEEcc--cCCHHHHHHHHHcCCCEEEE
Confidence 2333222 22 5555553 78999999999999999985
No 342
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.55 E-value=0.44 Score=43.46 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=79.5
Q ss_pred CccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCC
Q 020013 9 FEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKV 88 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~ 88 (332)
++.||+. .. .+.++-.+.....+|+=+++-.....+++.+++.++.++++ |...++.-.+.+.++.+.+.|+
T Consensus 110 v~iPvl~--kd-fi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~l-----Gl~~lvevh~~~E~~~A~~~ga 181 (260)
T PRK00278 110 VSLPVLR--KD-FIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSL-----GLDVLVEVHDEEELERALKLGA 181 (260)
T ss_pred cCCCEEe--ee-ecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHc-----CCeEEEEeCCHHHHHHHHHcCC
Confidence 4679995 33 47788888888888864444332334677888888888763 4554443333555677888999
Q ss_pred cEEEEccC-----CCcHHHHHHHHhC---CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 89 AVLQVSWG-----EYSEELVLEAHSA---GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 89 ~~I~~~~g-----~~~~~~i~~~~~~---g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
++|-++-- .+..+....+... ..+++ ..+.+++++..+.+.|+|+|++
T Consensus 182 diIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 182 PLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 99987620 1122333444332 23554 3567999999999999999998
No 343
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.52 E-value=0.055 Score=53.73 Aligned_cols=72 Identities=31% Similarity=0.484 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee--ecccc
Q 020013 121 DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC--LGTRF 198 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~--~GT~f 198 (332)
+.+....+.|+|.|+++-. -||. ...+.+++++++.++ +++|| +|.|.|.+.+..++.+|||+|- ||+.=
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a--~~~~---~~~~~~i~~ik~~~p--~~~v~-agnv~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTA--HGHQ---EKMLEALRAVRALDP--GVPIV-AGNVVTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHHHHHHhCCCEEEEecc--CCcc---HHHHHHHHHHHHHCC--CCeEE-eeccCCHHHHHHHHHcCCCEEEECccCCc
Confidence 3445567889999999754 3442 356788888888764 45554 6999999999999999999876 44533
Q ss_pred cc
Q 020013 199 VA 200 (332)
Q Consensus 199 l~ 200 (332)
++
T Consensus 302 ic 303 (479)
T PRK07807 302 MC 303 (479)
T ss_pred cc
Confidence 33
No 344
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=95.49 E-value=0.22 Score=47.67 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=60.2
Q ss_pred CceeecCC---CCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc----------------
Q 020013 36 GLGLLRAP---DWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW---------------- 95 (332)
Q Consensus 36 glG~i~~~---~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~---------------- 95 (332)
|...+... ...++|++.+.|.++|+.+ .+|+++.+......+.....+.+.++|+|.+..
T Consensus 172 g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~ 251 (368)
T PF01645_consen 172 GVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHV 251 (368)
T ss_dssp T--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC
T ss_pred CCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhC
Confidence 55666432 2457899999999999998 899999998765533333347889999999862
Q ss_pred CCCcH----HHHHHHHhCC----CEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 96 GEYSE----ELVLEAHSAG----VKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 96 g~~~~----~~i~~~~~~g----~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
|.|.. +..+.+.+.| +.++. .+.+..++.+++..|+|+|-+
T Consensus 252 GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~i 302 (368)
T PF01645_consen 252 GLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYI 302 (368)
T ss_dssp ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-
T ss_pred CCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEe
Confidence 22111 1223344433 44553 466889999999999999876
No 345
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.49 E-value=0.067 Score=47.59 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=55.7
Q ss_pred cCCH-HHHHHHHHcCCCEEEEecCCC-CcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH--cCccee
Q 020013 117 VGSF-DEARKAVNAGVDAIIVQGREA-GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS--LGAQGI 192 (332)
Q Consensus 117 v~s~-~~a~~a~~~g~D~ivv~G~ea-GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~--~GA~gV 192 (332)
..++ +.|+...+.|+|.+.+---++ -|+ ...+.++.++.+ .+|+...|||.+.+++..++. .||+-|
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~ivDLd~~~~~----~~n~~~i~~i~~-----~~~v~vgGGirs~e~~~~~~~~l~~a~rv 105 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIADLDRIVGL----GDNFSLLSKLSK-----RVELIADCGVRSPEDLETLPFTLEFASRV 105 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEcccccCC----cchHHHHHHHHh-----hCcEEEcCccCCHHHHHHHHhhhccceEE
Confidence 3444 556666778999888733221 122 234677888776 369999999999999999865 269999
Q ss_pred eeccccccCcc
Q 020013 193 CLGTRFVASEE 203 (332)
Q Consensus 193 ~~GT~fl~t~E 203 (332)
++||..+..+|
T Consensus 106 vigT~a~~~p~ 116 (221)
T TIGR00734 106 VVATETLDITE 116 (221)
T ss_pred eecChhhCCHH
Confidence 99999886543
No 346
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.45 E-value=1.1 Score=40.36 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=94.6
Q ss_pred HHHHHHHhCCCceeecCCCCCCH------HHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 26 ELVAAVANAGGLGLLRAPDWEAP------DYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 26 ~la~avs~aGglG~i~~~~~~~~------e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
+++....++| +..|..++..++ +...+.++++++.. +.++. .+... ..+.++.+.+.+++.|.+.....
T Consensus 23 ~i~~~L~~~G-V~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~--~l~~~-~~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 23 EIAEALDEAG-VDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQ--ALVRN-REKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred HHHHHHHHcC-CCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEE--EEccC-chhhHHHHHhCCcCEEEEEEecC
Confidence 3444454555 444443322222 33455666666543 22232 22222 25678889999999998764332
Q ss_pred c------------------HHHHHHHHhCCCEEEEec---CC--------HHHHHHHHHcCCCEEEEecCCCCcccCCCC
Q 020013 99 S------------------EELVLEAHSAGVKVVPQV---GS--------FDEARKAVNAGVDAIIVQGREAGGHVIGQD 149 (332)
Q Consensus 99 ~------------------~~~i~~~~~~g~~v~~~v---~s--------~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~ 149 (332)
+ .+.++.+++.|+.+...+ +. .+.++.+.+.|+|.|.+.-. -|.. .+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt--~G~~-~P~ 175 (265)
T cd03174 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT--VGLA-TPE 175 (265)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh--cCCc-CHH
Confidence 0 133455677888876443 33 34556678899999988544 2332 333
Q ss_pred chhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
....++..+++..+ ++|+-.-+ |.+ ..+..+|+.+||+.|-
T Consensus 176 ~v~~li~~l~~~~~--~~~~~~H~Hn~~gla-~an~laA~~aG~~~id 220 (265)
T cd03174 176 EVAELVKALREALP--DVPLGLHTHNTLGLA-VANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHHHHHHHhCC--CCeEEEEeCCCCChH-HHHHHHHHHcCCCEEE
Confidence 45667777777663 38888888 884 5777888899987654
No 347
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.34 E-value=1.6 Score=41.42 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=107.8
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C----CCCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A----PDWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~----~~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+.+.++-+|- ..++|- . ..+...+.+...+..+.+... .|+.+++=-- .+.+.+..+++.|...|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg-~~~e~i~~ai~~GftSV 102 (347)
T PRK09196 24 NVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHG-NSPATCQRAIQLGFTSV 102 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCC-CCHHHHHHHHHcCCCEE
Confidence 456777777776553 233331 1 013344556666666655443 6888775322 23567788888999888
Q ss_pred EEccCCC-------c-H-------HHHHHHHhCCCEEEE-----------------------------ecCCHHHHHHHH
Q 020013 92 QVSWGEY-------S-E-------ELVLEAHSAGVKVVP-----------------------------QVGSFDEARKAV 127 (332)
Q Consensus 92 ~~~~g~~-------~-~-------~~i~~~~~~g~~v~~-----------------------------~v~s~~~a~~a~ 127 (332)
-+..... | + ++++.++..|+.|=. ..+++++|+...
T Consensus 103 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv 182 (347)
T PRK09196 103 MMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFV 182 (347)
T ss_pred EecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHH
Confidence 7763322 2 2 345556666654411 135688888876
Q ss_pred -HcCCCEEEE-ecCCCCcccC--CC---CchhhhHHHHHHHhCCCCCcEEeecCcCCH----------------------
Q 020013 128 -NAGVDAIIV-QGREAGGHVI--GQ---DGLISLLPMVVDLIGDRDIPIIAAGGIVDA---------------------- 178 (332)
Q Consensus 128 -~~g~D~ivv-~G~eaGGh~~--~~---~~~~~ll~~i~~~~~~~~iPviaaGGI~~~---------------------- 178 (332)
+.|+|.+-+ .|.-=|-... .+ .-.+.++.+|.+.++ ++|++.-||=+.+
T Consensus 183 ~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~--~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~ 260 (347)
T PRK09196 183 KKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP--NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPV 260 (347)
T ss_pred HHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC--CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCH
Confidence 469998876 2321111111 11 135788999988773 5999999887654
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.+++.+|..-|=++|.+..+
T Consensus 261 e~i~~ai~~GI~KINi~Tdl~~a 283 (347)
T PRK09196 261 EEIQEGIKHGVRKVNIDTDLRLA 283 (347)
T ss_pred HHHHHHHHCCCceEEeChHHHHH
Confidence 56778888888888887775433
No 348
>PRK14567 triosephosphate isomerase; Provisional
Probab=95.34 E-value=0.21 Score=45.23 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHH---HHHHHHhCCCEEEEecCCHHHHHH--------------HHH-----
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEE---LVLEAHSAGVKVVPQVGSFDEARK--------------AVN----- 128 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~---~i~~~~~~g~~v~~~v~s~~~a~~--------------a~~----- 128 (332)
-..+.+.+.|++++.++ |+..... -++.+.+.|+.++..++...+.+. .++
T Consensus 76 vS~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~ 155 (253)
T PRK14567 76 ISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVE 155 (253)
T ss_pred CCHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence 34667888999999885 3432221 233455689988887874332221 111
Q ss_pred cCCCEEEE-ecCCCCcccCCCCchh-------hhHHHHHHHhC---CCCCcEEeecCcCCHHHHHHHHHcC-cceeeecc
Q 020013 129 AGVDAIIV-QGREAGGHVIGQDGLI-------SLLPMVVDLIG---DRDIPIIAAGGIVDARGYVAALSLG-AQGICLGT 196 (332)
Q Consensus 129 ~g~D~ivv-~G~eaGGh~~~~~~~~-------~ll~~i~~~~~---~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT 196 (332)
.....+++ +..-+=|. |...+. ..+++....+. ..+++|+..|+| +++|+.+.++.+ .||+.+|+
T Consensus 156 ~~~~ivIAYEPvWAIGT--G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGg 232 (253)
T PRK14567 156 QLAKVVIAYEPVWAIGT--GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSLPDVDGGLIGG 232 (253)
T ss_pred HhCCEEEEECCHHHhCC--CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcCCCCCEEEeeh
Confidence 01223444 33333332 111222 22332221111 126899999999 999999999988 99999999
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+-+
T Consensus 233 asL 235 (253)
T PRK14567 233 ASL 235 (253)
T ss_pred hhh
Confidence 976
No 349
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=95.34 E-value=0.32 Score=42.74 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCcEEEEcc-----CCC-cHHHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCch
Q 020013 78 ENIKAILSEKVAVLQVSW-----GEY-SEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGL 151 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~-----g~~-~~~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~ 151 (332)
-..+.+.+.|++.+.++. +.. ...-++.+.+.|+..+..+..+.+.+.......++|-.+...+=|. |...+
T Consensus 72 vS~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~v~~q~~~~~~~~~vIAYEPvWAIGt--G~~as 149 (205)
T TIGR00419 72 ISAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNNVLTTAAAAALEPDVVAVEPPELIGT--GIPVS 149 (205)
T ss_pred CCHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHHHHHHHHhhhhcCeEEEECCHHHhCC--CCCCC
Confidence 346678889999998852 211 1122345567899888777555443333223333443444444332 11111
Q ss_pred hhhHHHHHHHh---C--CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccccc
Q 020013 152 ISLLPMVVDLI---G--DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFVA 200 (332)
Q Consensus 152 ~~ll~~i~~~~---~--~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl~ 200 (332)
..-..++.+.+ + ..+++|+..|+| +++++.+.+. .+.||+.+|++-+.
T Consensus 150 ~~~~~~v~~~ir~~~~~~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 150 PAQPEVVHGSVRAVKEVNESVRVLCGAGI-STGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred HHHHHHHHHHHHhhhhhcCCceEEEeCCC-CHHHHHHHhcCCCCCEEEEeeeeec
Confidence 11111111111 1 126899999999 7788887765 78999999999773
No 350
>PRK15452 putative protease; Provisional
Probab=95.34 E-value=0.43 Score=46.98 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=73.3
Q ss_pred eecCCCCHHHHHHHHhcCCcEEEEccCC---------C----cHHHHHHHHhCCCEEEEecCC---HHH-------HHHH
Q 020013 70 VVLAFPHNENIKAILSEKVAVLQVSWGE---------Y----SEELVLEAHSAGVKVVPQVGS---FDE-------ARKA 126 (332)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~I~~~~g~---------~----~~~~i~~~~~~g~~v~~~v~s---~~~-------a~~a 126 (332)
|..+....+.++.+++.|+|.|.++... + ..+.++.+++.|+++...+++ .++ ...+
T Consensus 6 Llapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l 85 (443)
T PRK15452 6 LLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPV 85 (443)
T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHH
Confidence 4444445788999999999999985321 1 123456678899999876542 222 2345
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec--CcCCHHHHHHHHHcCcceeeec
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG--GIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG--GI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.|+|+|+++.. .++..+++..+ ++|+.++- .|.|...+..+..+|++.|++.
T Consensus 86 ~~~gvDgvIV~d~-------------G~l~~~ke~~p--~l~ih~stqlni~N~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 86 IAMKPDALIMSDP-------------GLIMMVREHFP--EMPIHLSVQANAVNWATVKFWQQMGLTRVILS 141 (443)
T ss_pred HhCCCCEEEEcCH-------------HHHHHHHHhCC--CCeEEEEecccCCCHHHHHHHHHCCCcEEEEC
Confidence 5789999999432 23333444332 57888766 4677788888888999877763
No 351
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.32 E-value=1.1 Score=42.31 Aligned_cols=137 Identities=20% Similarity=0.258 Sum_probs=85.0
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC---CHHHHHHHH-
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG---SFDEARKAV- 127 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~---s~~~a~~a~- 127 (332)
+++.+.++.++.|+..-++- .+.++.+.+. +|+++++... ....+++.+-+.|.+|+.+-+ ++++...+.
T Consensus 147 ~~L~~~~~~~Gl~v~tev~d----~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e 221 (335)
T PRK08673 147 KLLAEAREETGLPIVTEVMD----PRDVELVAEY-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAE 221 (335)
T ss_pred HHHHHHHHHcCCcEEEeeCC----HHHHHHHHHh-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 35566666667777665543 5677878777 9999997432 334677777778999987643 677766543
Q ss_pred ---HcCC-CEEEEe-cC-CCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH------HHHHHHHHcCcceeeec
Q 020013 128 ---NAGV-DAIIVQ-GR-EAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA------RGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ---~~g~-D~ivv~-G~-eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~------~~v~~al~~GA~gV~~G 195 (332)
..|- +.++++ |. ..-+.. .....+..++.+++.. +.|||..-.=+++ .-..+++++||||+++=
T Consensus 222 ~i~~~GN~~viL~erG~~tf~~~~-~~~ldl~ai~~lk~~~---~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE 297 (335)
T PRK08673 222 YILAEGNPNVILCERGIRTFETAT-RNTLDLSAVPVIKKLT---HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVE 297 (335)
T ss_pred HHHHcCCCeEEEEECCCCCCCCcC-hhhhhHHHHHHHHHhc---CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEE
Confidence 3565 455554 22 110110 1123466677777655 7899774322222 34567889999999985
Q ss_pred ccc
Q 020013 196 TRF 198 (332)
Q Consensus 196 T~f 198 (332)
..|
T Consensus 298 ~H~ 300 (335)
T PRK08673 298 VHP 300 (335)
T ss_pred ecC
Confidence 544
No 352
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.27 E-value=0.096 Score=47.27 Aligned_cols=71 Identities=27% Similarity=0.286 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCEEEEe--cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 120 FDEARKAVNAGVDAIIVQ--GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~--G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+.|+...+.|+++|-|- +.-.|| .+..+..+++.+ ++||+.-..|.++.++.++..+|||+|.+=.+
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~G-------s~~~l~~v~~~v---~~PvL~KDFIid~~QI~ea~~~GADavLLI~~ 133 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGG-------SLEDLKSVSSEL---KIPVLRKDFILDEIQIREARAFGASAILLIVR 133 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCC-------CHHHHHHHHHhc---CCCEEeccccCCHHHHHHHHHcCCCEEEeEHh
Confidence 355677788999999762 222233 367788888877 79999999999999999999999999988777
Q ss_pred ccc
Q 020013 198 FVA 200 (332)
Q Consensus 198 fl~ 200 (332)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 664
No 353
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.24 E-value=0.22 Score=46.49 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=68.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHH---HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGY---VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v---~~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|+.+-+...+...-..++..+++...+ ++|||+ .|+.++.+.+ +.+-.+||||+++-+.
T Consensus 30 lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g-rvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 30 LVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG-RVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC-CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3455678999999997764433321222235556667776643 689887 5555443333 2334589999999988
Q ss_pred cccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhh
Q 020013 198 FVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNW 247 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~ 247 (332)
+....--..-..|=+++.++.+.. ..+++. |++...-+.-.++.++
T Consensus 109 yY~k~~~~gl~~hf~~ia~a~~lP-vilYN~---P~~tg~~l~~e~i~~l 154 (299)
T COG0329 109 YYNKPSQEGLYAHFKAIAEAVDLP-VILYNI---PSRTGVDLSPETIARL 154 (299)
T ss_pred CCcCCChHHHHHHHHHHHHhcCCC-EEEEeC---ccccCCCCCHHHHHHH
Confidence 776654322233334444444554 234542 3444444444444443
No 354
>PLN02429 triosephosphate isomerase
Probab=95.24 E-value=0.28 Score=45.82 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=68.2
Q ss_pred HHHHHHhcCCcEEEEc-------cCCCcHHHHHH----HHhCCCEEEEecCCHH--------------HHHHHHHcCCC-
Q 020013 79 NIKAILSEKVAVLQVS-------WGEYSEELVLE----AHSAGVKVVPQVGSFD--------------EARKAVNAGVD- 132 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~-------~g~~~~~~i~~----~~~~g~~v~~~v~s~~--------------~a~~a~~~g~D- 132 (332)
..+.+.+.|++++.++ |++ ..+.+.+ +.+.|+.++..++... +++...+.-.|
T Consensus 139 Sa~mLkd~Gv~~ViiGHSERR~~f~E-td~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~ 217 (315)
T PLN02429 139 SVEQLKDLGCKWVILGHSERRHVIGE-KDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSW 217 (315)
T ss_pred CHHHHHHcCCCEEEeCccccCCCCCc-CHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcc
Confidence 3566778889988875 343 3455544 6778998888887432 22222322112
Q ss_pred --EEEE-ecCCCCc--ccCCCC---chhhhHHHHHH-HhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeeccccc
Q 020013 133 --AIIV-QGREAGG--HVIGQD---GLISLLPMVVD-LIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRFV 199 (332)
Q Consensus 133 --~ivv-~G~eaGG--h~~~~~---~~~~ll~~i~~-~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~fl 199 (332)
.+|+ +...+=| ....+. .....+++... .+. ..+++|+..|+| +++++.+.+. .+.||+.+|++-+
T Consensus 218 ~~ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV-~~~N~~el~~~~diDG~LVGgASL 296 (315)
T PLN02429 218 DNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSV-NGGNSAELAKEEDIDGFLVGGASL 296 (315)
T ss_pred cceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCcc-CHHHHHHHhcCCCCCEEEeeccee
Confidence 3443 3322322 211111 11222332111 110 126899999999 7899888774 7999999999987
No 355
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.21 E-value=1.4 Score=41.54 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=76.3
Q ss_pred EEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHHHHHHH----HcCCC---EEE
Q 020013 66 FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDEARKAV----NAGVD---AII 135 (332)
Q Consensus 66 ~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~----~~g~D---~iv 135 (332)
+|+-++...-+.+.++.+.+.+++++.++.++ ....+++.+.+.|.+|+...+ +.+|...+. +.|.+ .++
T Consensus 88 ~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~l 167 (329)
T TIGR03569 88 KGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITL 167 (329)
T ss_pred hCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEE
Confidence 45555544445778888889999999986443 234688888888999987654 777666543 45764 777
Q ss_pred EecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 136 VQGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 136 v~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
++... +... .....+..++.+++.. ++||..++=-..-.-..++.++||+
T Consensus 168 lhC~s--~YP~~~~~~nL~~I~~Lk~~f---~~pVG~SdHt~G~~~~~aAvalGA~ 218 (329)
T TIGR03569 168 LHCTT--EYPAPFEDVNLNAMDTLKEAF---DLPVGYSDHTLGIEAPIAAVALGAT 218 (329)
T ss_pred EEECC--CCCCCcccCCHHHHHHHHHHh---CCCEEECCCCccHHHHHHHHHcCCC
Confidence 65431 1110 0123366677777776 6899876543222333567789999
No 356
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.19 E-value=0.6 Score=43.80 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=88.5
Q ss_pred cceecCCCCCCCCcHHHHHHHHhCCCceeecCC--------CC-----CCHHHHHHHHHHHHhhcCCcEEE-EeecC-C-
Q 020013 11 YGIVQAPLGPDISGPELVAAVANAGGLGLLRAP--------DW-----EAPDYLRDLIRKTRSLTERPFGV-GVVLA-F- 74 (332)
Q Consensus 11 ~Pii~apM~~g~s~~~la~avs~aGglG~i~~~--------~~-----~~~e~~~~~i~~~r~~~~~p~gv-nl~~~-~- 74 (332)
-||+ |. ..-+...+..+.++|. .+|..+ +| .+.|++....+.++.-.+.|+-| .+-.. .
T Consensus 35 ~kiv---ml-TAyD~~sA~i~d~aGv-D~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~ 109 (332)
T PLN02424 35 EPIT---MV-TAYDYPSAVHVDSAGI-DVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYE 109 (332)
T ss_pred CcEE---EE-ecCCHHHHHHHHHcCC-CEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCC
Confidence 4665 32 3557778888877763 222111 12 34566666666666656677766 43221 1
Q ss_pred -CCHH----HHHHHHhcCCcEEEEccC-CCcHHHHHHHHhCCCEEEEecC-----------------CH-------HHHH
Q 020013 75 -PHNE----NIKAILSEKVAVLQVSWG-EYSEELVLEAHSAGVKVVPQVG-----------------SF-------DEAR 124 (332)
Q Consensus 75 -~~~~----~~~~~~~~~~~~I~~~~g-~~~~~~i~~~~~~g~~v~~~v~-----------------s~-------~~a~ 124 (332)
..++ ..+.+.+.|++.|-+-.| ....+.++.+.+.||+|+..++ +. ++|+
T Consensus 110 ~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ 189 (332)
T PLN02424 110 SSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETAL 189 (332)
T ss_pred CCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHH
Confidence 1122 223445789999999745 2344678888899999983321 22 3556
Q ss_pred HHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 125 KAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 125 ~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
..+++||+.|++++. + -.+..+|.+.+ ++|+|..|
T Consensus 190 ale~AGAf~ivLE~V----------p-~~la~~It~~l---~IPtIGIG 224 (332)
T PLN02424 190 ALQEAGCFAVVLECV----------P-APVAAAITSAL---QIPTIGIG 224 (332)
T ss_pred HHHHcCCcEEEEcCC----------c-HHHHHHHHHhC---CCCEEeec
Confidence 677899999999653 1 23677888877 79998654
No 357
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.15 E-value=1.7 Score=42.88 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEEec----C---C----HHHHHHHHHcCCCEEEEecCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQV----G---S----FDEARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~~v----~---s----~~~a~~a~~~g~D~ivv~G~ea 141 (332)
...++.+.+.|++.|.+..... ..+.++.+++.|..+-..+ + + .+.++.+.+.|+|.|.+.-.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt-- 176 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDM-- 176 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCC--
Confidence 3557888999999987653221 2245677788887654221 1 2 34567788999999988433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEe----ecCcCCHHHHHHHHHcCcceeeec
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIA----AGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPvia----aGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.|.. .+.....++..+++.+ ++||-. .-|.+ ..+..+|+.+||+.|-..
T Consensus 177 ~G~l-~P~~v~~lv~alk~~~---~~pi~~H~Hnt~GlA-~AN~laAieaGad~vD~s 229 (448)
T PRK12331 177 AGIL-TPYVAYELVKRIKEAV---TVPLEVHTHATSGIA-EMTYLKAIEAGADIIDTA 229 (448)
T ss_pred CCCC-CHHHHHHHHHHHHHhc---CCeEEEEecCCCCcH-HHHHHHHHHcCCCEEEee
Confidence 4443 3445577888888776 578766 45773 577788889999987653
No 358
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.10 E-value=0.12 Score=46.47 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=66.3
Q ss_pred EecCCHHHHHHHHHcCCCEEE-EecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-----cCc-CCH-------HH
Q 020013 115 PQVGSFDEARKAVNAGVDAII-VQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-----GGI-VDA-------RG 180 (332)
Q Consensus 115 ~~v~s~~~a~~a~~~g~D~iv-v~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-----GGI-~~~-------~~ 180 (332)
..+.|++++..|.+.|+|-|= +.+...||.+ ++..++..+++.+ ++||.+- |+. .+. ++
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~~GGlT----PS~g~i~~~~~~~---~ipv~vMIRPR~gdF~Ys~~E~~~M~~d 78 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPKEGGLT----PSLGVLKSVRERV---TIPVHPIIRPRGGDFCYSDGEFAAMLED 78 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcCCCCcC----CCHHHHHHHHHhc---CCCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 457799999999999999995 4666667765 5577788888776 6887642 332 222 34
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc-CCCc
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE-MDKT 220 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~-~~~t 220 (332)
+..+..+|+|||++|-- +++-.+....-+.+++ +.+.
T Consensus 79 i~~~~~~GadGvV~G~L---~~dg~vD~~~~~~Li~~a~~~ 116 (248)
T PRK11572 79 IATVRELGFPGLVTGVL---DVDGHVDMPRMRKIMAAAGPL 116 (248)
T ss_pred HHHHHHcCCCEEEEeeE---CCCCCcCHHHHHHHHHHhcCC
Confidence 66667799999999943 5666676666555555 4443
No 359
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.05 E-value=0.54 Score=42.11 Aligned_cols=90 Identities=12% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCC-----cHHHHHHHHhC--CCEEEE
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEY-----SEELVLEAHSA--GVKVVP 115 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~-----~~~~i~~~~~~--g~~v~~ 115 (332)
.+|+.+.+.++.+++ .+.|+.|.+-...+. .+..+.+.+.|++.|+++...+ .-+.++.+++. .++|+.
T Consensus 118 ~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg 196 (231)
T TIGR00736 118 KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG 196 (231)
T ss_pred CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence 478889999999985 378888877654322 2456677889999999874321 13567777765 488885
Q ss_pred --ecCCHHHHHHHHHcCCCEEEE
Q 020013 116 --QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 116 --~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.|.+++++.++.|||+|-+
T Consensus 197 NGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 197 NNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred ECCcCCHHHHHHHHHhCCCeEEE
Confidence 488999999999999999987
No 360
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=95.02 E-value=0.4 Score=40.44 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEe--ecC-CCCHHHHHHHHh-cCCcEEEEccCCCcHHHHHHHHhCCCEEEEec---C-
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGV--VLA-FPHNENIKAILS-EKVAVLQVSWGEYSEELVLEAHSAGVKVVPQV---G- 118 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl--~~~-~~~~~~~~~~~~-~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v---~- 118 (332)
+.-.+++.++.+++... -.-+++ +-- ..++..++-+.+ .++|.|... -...+...++.|+..+--+ .
T Consensus 33 ~i~~ik~ivk~lK~~gK-~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIIST----k~~~i~~Akk~~~~aIqR~FilDS 107 (181)
T COG1954 33 HILNIKEIVKKLKNRGK-TVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIIST----KSNVIKKAKKLGILAIQRLFILDS 107 (181)
T ss_pred hhhhHHHHHHHHHhCCc-EEEEEeHHhcccCCchHHHHHHHHhccCCeeEEc----cHHHHHHHHHcCCceeeeeeeecH
Confidence 34456677777765422 122221 110 122344444443 569988765 2457888888888766322 2
Q ss_pred -CHHHH-HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceee
Q 020013 119 -SFDEA-RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 119 -s~~~a-~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+.+-+ ....+..+|+|=+- .| -....++++.+.. ++|||+.|=|.+-+++.+++.+||-+|-
T Consensus 108 ~Al~~~~~~i~~~~pD~iEvL--------PG--v~Pkvi~~i~~~t---~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 108 IALEKGIKQIEKSEPDFIEVL--------PG--VMPKVIKEITEKT---HIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEc--------Cc--ccHHHHHHHHHhc---CCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 33333 33556899999661 11 1234556666655 7999999999999999999999998776
No 361
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=95.02 E-value=1.2 Score=39.62 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=82.5
Q ss_pred HHHHHHHhhc--CCcEEEEeecCCCCHHHHHHHH----hcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHH
Q 020013 53 DLIRKTRSLT--ERPFGVGVVLAFPHNENIKAIL----SEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEAR 124 (332)
Q Consensus 53 ~~i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~~----~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~ 124 (332)
+.++++++.. +.|+-+.++.... ++.++.+. ..+..++. +..-..--+.++.+++.|+++-.+ +-|++++.
T Consensus 42 ~~~~~i~~~i~~~~~vs~ev~~~~~-~~mi~eA~~l~~~~~~nv~VKIP~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~ 120 (222)
T PRK12656 42 ERIREVREIIGDEASIHVQVVAQDY-EGILKDAHEIRRQCGDDVYIKVPVTPAGLAAIKTLKAEGYHITATAIYTVFQGL 120 (222)
T ss_pred HHHHHHHHHhCCCCcEEEEEEECCH-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceEEeeeCCHHHHH
Confidence 3445555543 3577777765432 33333322 23444433 442111235678888899998755 67999999
Q ss_pred HHHHcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCC-CCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 125 KAVNAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDR-DIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 125 ~a~~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~-~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.++|+++|-. -|+ +.-|+ ....++.++.+.+... .-.-|.+--+.+.+++.+++.+||+.+-+.
T Consensus 121 ~Aa~aGa~yvsPyvgRi~d~g~-----D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp 189 (222)
T PRK12656 121 LAIEAGADYLAPYYNRMENLNI-----DSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAG 189 (222)
T ss_pred HHHHCCCCEEecccchhhhcCC-----CHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecC
Confidence 999999999864 233 11111 1234555555544211 124555666889999999999999998863
No 362
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.01 E-value=0.29 Score=44.92 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+.++......-..++..+++.... ++||++.-|=.+.++.. .+-.+|||++++...
T Consensus 23 ~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 23 LVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG-RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC-CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4455677899999997765555542222235566677776643 68987655544444433 334589999999988
Q ss_pred cccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+........--.|=+.+.++.+..+ .++. .|...+..+....+.++.+
T Consensus 102 ~y~~~~~~~~~~~~~~ia~~~~~pi-~iYn---~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 102 YYNKPSQEGIVAHFKAVADASDLPV-ILYN---IPGRTGVDLSPETIARLAE 149 (281)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCE-EEEE---CccccCCCCCHHHHHHHhc
Confidence 7766211111222233333433332 2443 2444455666666666543
No 363
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.96 E-value=0.66 Score=46.32 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=77.7
Q ss_pred ecCCCCCCCCcHHHHHHHHhCCCceeecCC-CCCCHHHHHHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 14 VQAPLGPDISGPELVAAVANAGGLGLLRAP-DWEAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 14 i~apM~~g~s~~~la~avs~aGglG~i~~~-~~~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
+.+.|+....+.+.+.++.++|. .++..- .....+.+.+.++.+++.. +.|+.++-.. ..+....+.+.|+|+|
T Consensus 219 V~aai~~~~~~~e~a~~L~~agv-dvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~---t~e~a~~l~~aGad~i 294 (486)
T PRK05567 219 VGAAVGVGADNEERAEALVEAGV-DVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVA---TAEAARALIEAGADAV 294 (486)
T ss_pred EEeecccCcchHHHHHHHHHhCC-CEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccC---CHHHHHHHHHcCCCEE
Confidence 45666532345678888888774 333221 0122345667788887764 6777664333 2566778889999999
Q ss_pred EEccC--------------CCcHHHH----HHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEEe
Q 020013 92 QVSWG--------------EYSEELV----LEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 92 ~~~~g--------------~~~~~~i----~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
.++.| .+....+ +.+++.++++++ .+.+..++.+|+..|+|++.+-
T Consensus 295 ~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 295 KVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred EECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 76422 2212222 233346899998 6889999999999999999983
No 364
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.78 E-value=0.24 Score=46.03 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=69.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH----HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v----~~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++...+ ++||++.=|-.+-++. ..+-++|||++++...
T Consensus 26 lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g-~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 26 LIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG-RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3455678899999997765444432222235566666666643 6999866554455554 3445689999999999
Q ss_pred cccCccCCCCHHHHHHHhcCC-CceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASEESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~Es~~~~~~k~~~~~~~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+........--.|=+.|.++. +.. ..+++ .|+..+.-+.-..+.++.
T Consensus 105 ~y~~~~~~~l~~~f~~ia~a~~~lp-v~iYn---~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 105 YYNKPNQEALYDHFAEVADAVPDFP-IIIYN---IPGRAAQEIAPKTMARLR 152 (294)
T ss_pred cCCCCCHHHHHHHHHHHHHhccCCC-EEEEe---CchhcCcCCCHHHHHHHH
Confidence 876642222223333344443 333 23443 234334445555555543
No 365
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.77 E-value=0.66 Score=44.12 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=35.8
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|..+..+++.. ++|||+- ||.+.+++..+..+|+|+|++.-
T Consensus 200 ~~~~~i~~l~~~~---~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHT---KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhc---CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 4577788887766 7899987 77899999999999999999853
No 366
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=94.77 E-value=1.1 Score=40.82 Aligned_cols=120 Identities=21% Similarity=0.198 Sum_probs=75.8
Q ss_pred CccceecCCCCCCCCcH-------HHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHH
Q 020013 9 FEYGIVQAPLGPDISGP-------ELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIK 81 (332)
Q Consensus 9 ~~~Pii~apM~~g~s~~-------~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~ 81 (332)
.+.|++ -|. ..+| .++...+++|.-|++.. ..+.++..+.++.+++.. ... +-++.+....+.++
T Consensus 86 ~~~plv--~m~--Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~g-l~~-i~lv~P~T~~eri~ 157 (256)
T TIGR00262 86 PNIPIG--LLT--YYNLIFRKGVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHG-VKP-IFLVAPNADDERLK 157 (256)
T ss_pred CCCCEE--EEE--eccHHhhhhHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCC-CcE-EEEECCCCCHHHHH
Confidence 356887 775 4555 78899999999998865 246677788888887642 111 22233333345665
Q ss_pred HHHhcCCcEEEE---c--cCC------CcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 82 AILSEKVAVLQV---S--WGE------YSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 82 ~~~~~~~~~I~~---~--~g~------~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+..-.+|.+ . -|. ...+.++++++. +.+++. .+++.++++.+.+.|+|++++
T Consensus 158 ~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 158 QIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred HHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 555543324432 1 121 123566677763 455554 467899999999999999998
No 367
>PLN02623 pyruvate kinase
Probab=94.74 E-value=0.54 Score=47.49 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHH----HHhC--CCEEEEecCCHHHHH---HHHHcCCCEEEEecCCCCcccCCC
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLE----AHSA--GVKVVPQVGSFDEAR---KAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~----~~~~--g~~v~~~v~s~~~a~---~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
+.++..++.++|+|.++|=... +-++. ++.. .+.+++++-+.+-.. ...+ |+|+|.+--.+-|-+. +.
T Consensus 282 ~di~f~~~~~vD~ialSFVr~a-~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLgvel-g~ 358 (581)
T PLN02623 282 EDIKFGVENKVDFYAVSFVKDA-QVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLGAEL-PI 358 (581)
T ss_pred HHHHHHHHcCCCEEEECCCCCH-HHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhhhhc-Cc
Confidence 4466778899999999975433 23333 3333 467889888765433 2333 9999998333333333 22
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeec---------CcCC---HHHHHHHHHcCcceeeecc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAG---------GIVD---ARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaG---------GI~~---~~~v~~al~~GA~gV~~GT 196 (332)
.....+..++.+.....++|++.+. ..-+ ..+++.++..|+|+|+++.
T Consensus 359 ~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~ 418 (581)
T PLN02623 359 EEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 418 (581)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecc
Confidence 2223344444444333378998766 4421 2589999999999999984
No 368
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.67 E-value=2.1 Score=38.50 Aligned_cols=167 Identities=14% Similarity=0.186 Sum_probs=99.6
Q ss_pred CCCcHHHHHHHHhCCCceeec----------C--CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-----HHHHHHH
Q 020013 21 DISGPELVAAVANAGGLGLLR----------A--PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-----NENIKAI 83 (332)
Q Consensus 21 g~s~~~la~avs~aGglG~i~----------~--~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-----~~~~~~~ 83 (332)
++-++--+..+.++|.=.+.. . .+..+.+++.+.++++...++.|+-+.+=.-..+ .+.++.+
T Consensus 15 ~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~ 94 (238)
T PF13714_consen 15 NVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVREL 94 (238)
T ss_dssp EESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHH
Confidence 455666667666666211110 0 1245667777788888777888988865322222 4557778
Q ss_pred HhcCCcEEEEccC---------CCcHHHHHHHHh-------CCCEEEEecCC-------HHH----HHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQVSWG---------EYSEELVLEAHS-------AGVKVVPQVGS-------FDE----ARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~~~g---------~~~~~~i~~~~~-------~g~~v~~~v~s-------~~~----a~~a~~~g~D~ivv 136 (332)
.+.|+..|++--. .++++.+++++. .+..|+.-..+ .++ ++...++|+|.|.+
T Consensus 95 ~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi 174 (238)
T PF13714_consen 95 ERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFI 174 (238)
T ss_dssp HHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 8899999987411 034456665542 36666644332 233 33456899999999
Q ss_pred ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 137 QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 137 ~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.|. .+..-+.++.+.+ +.|+...-+ ...-++.++-.+|..-|..|..++.+
T Consensus 175 ~~~----------~~~~~i~~~~~~~---~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~a 225 (238)
T PF13714_consen 175 PGL----------QSEEEIERIVKAV---DGPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLRA 225 (238)
T ss_dssp TTS----------SSHHHHHHHHHHH---SSEEEEETT-SSSS-HHHHHHTTESEEEETSHHHHH
T ss_pred CCC----------CCHHHHHHHHHhc---CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHHH
Confidence 554 1123367777777 688766554 22366777888999999999877654
No 369
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.66 E-value=0.31 Score=45.24 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=70.1
Q ss_pred HHHHHHH-cCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecc
Q 020013 122 EARKAVN-AGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGT 196 (332)
Q Consensus 122 ~a~~a~~-~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT 196 (332)
..+...+ .|+|+|++-|..+-++......-..++..+++...+ ++|||+.=|-.+.+++. .+-++|||+|++-+
T Consensus 29 li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 29 LVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3455677 899999997664444432222235566666766643 68988755543455543 44568999999999
Q ss_pred ccccCccCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 197 RFVASEESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 197 ~fl~t~Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.+........--.|=+.+.++.+.. ..+++ .|...+..+...++.++.+
T Consensus 108 P~y~~~~~~~l~~~f~~va~a~~lP-v~iYn---~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 108 PFYYPFSFEEICDYYREIIDSADNP-MIVYN---IPALTGVNLSLDQFNELFT 156 (293)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCC-EEEEe---CchhhccCCCHHHHHHHhc
Confidence 8875532111122333344443333 23443 2444455666666666543
No 370
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.61 E-value=2.4 Score=40.05 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=75.1
Q ss_pred EEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHHHHHHH----HcCC-CEEEEe
Q 020013 66 FGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDEARKAV----NAGV-DAIIVQ 137 (332)
Q Consensus 66 ~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~a~~a~----~~g~-D~ivv~ 137 (332)
.|+.++...-+.+.++.+.+.+++++.++.++ ....+++.+-+.|.+|+.+.+ +.+|...+. +.|. +.++.+
T Consensus 89 ~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 89 LGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred hCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 45555544445778888888999999987443 234678888888999987654 777666543 4677 677776
Q ss_pred cCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 138 GREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 138 G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
+.. +... .....+..++.+++.. ++||-.+.=-..-.-..++.++||+
T Consensus 169 C~s--~YP~~~~~~nL~~i~~lk~~f---~~pVG~SDHt~G~~~~~aAva~GA~ 217 (327)
T TIGR03586 169 CTS--SYPAPLEDANLRTIPDLAERF---NVPVGLSDHTLGILAPVAAVALGAC 217 (327)
T ss_pred cCC--CCCCCcccCCHHHHHHHHHHh---CCCEEeeCCCCchHHHHHHHHcCCC
Confidence 531 1210 1123366677777766 6899554422112333566789998
No 371
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.60 E-value=3.8 Score=38.05 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=106.4
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceee-----------cCC--CCCCHHHHHHHHHHHHhhcCCcEEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL-----------RAP--DWEAPDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i-----------~~~--~~~~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
|.+++.-.-|++ + +++-++--|..+..+|.=.+. +.+ +..+.+++...++++...++.|+-+.
T Consensus 8 ~r~l~~~~~~l~---~-p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD 83 (294)
T TIGR02319 8 FRELMNAPEILV---V-PSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMD 83 (294)
T ss_pred HHHHhcCCCcEE---e-ecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 455665455665 2 256677777777777631111 111 13455666667777777778888775
Q ss_pred eecCCC----CHHHHHHHHhcCCcEEEEcc-------C-------CCcHHHHHHHHh-------CCCEEEEec-----CC
Q 020013 70 VVLAFP----HNENIKAILSEKVAVLQVSW-------G-------EYSEELVLEAHS-------AGVKVVPQV-----GS 119 (332)
Q Consensus 70 l~~~~~----~~~~~~~~~~~~~~~I~~~~-------g-------~~~~~~i~~~~~-------~g~~v~~~v-----~s 119 (332)
+=.-.. ....++.+.+.|+..|++-- | .+..+.+++++. .++.|+.-. ..
T Consensus 84 ~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g 163 (294)
T TIGR02319 84 ADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFG 163 (294)
T ss_pred CCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCC
Confidence 422111 12346778889999987721 1 122344555432 123333322 23
Q ss_pred HHHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE---EeecCcCCHHHHHHHHHcCccee
Q 020013 120 FDEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI---IAAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 120 ~~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv---iaaGGI~~~~~v~~al~~GA~gV 192 (332)
.+++ +...++|+|.|.+.|. .+..-+.++.+.+ +.|+ +..||-...-++.++-++|..-|
T Consensus 164 ~deaI~Ra~aY~eAGAD~ifi~~~----------~~~~ei~~~~~~~---~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v 230 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCIFLEAM----------LDVEEMKRVRDEI---DAPLLANMVEGGKTPWLTTKELESIGYNLA 230 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCC----------CCHHHHHHHHHhc---CCCeeEEEEecCCCCCCCHHHHHHcCCcEE
Confidence 4443 4456899999999543 2244566777766 4565 55565423356778888999999
Q ss_pred eeccccccC
Q 020013 193 CLGTRFVAS 201 (332)
Q Consensus 193 ~~GT~fl~t 201 (332)
..|...+.+
T Consensus 231 ~~~~~~~~a 239 (294)
T TIGR02319 231 IYPLSGWMA 239 (294)
T ss_pred EEcHHHHHH
Confidence 999887665
No 372
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.58 E-value=1 Score=41.89 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEc---cCC-----------------C-------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVS---WGE-----------------Y------- 98 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~---~g~-----------------~------- 98 (332)
+++.+.+.++.+|+.++.|+.+.+-....+ .+.++.+.+.|+|.|.++ .+. .
T Consensus 141 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p 220 (301)
T PRK07259 141 DPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKP 220 (301)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCccc
Confidence 578889999999988888998887543222 234566778899988652 010 0
Q ss_pred -cHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 -SEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 -~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..++++.+++. +++|+. .+.+.+++.+...+|+|.|-+
T Consensus 221 ~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~i 262 (301)
T PRK07259 221 IALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQV 262 (301)
T ss_pred ccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeE
Confidence 12456666553 677774 478999999999999999977
No 373
>PLN02591 tryptophan synthase
Probab=94.52 E-value=1.8 Score=39.26 Aligned_cols=122 Identities=21% Similarity=0.171 Sum_probs=79.5
Q ss_pred CccceecCCCCCCC-----CcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPDI-----SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~-----s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.|++ =|+..- .-..+...++++|.-|+|-. . .++|+..+....+++. +. --+-++.+...++.++.+
T Consensus 77 ~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip-D-LP~ee~~~~~~~~~~~-gl-~~I~lv~Ptt~~~ri~~i 150 (250)
T PLN02591 77 LSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVP-D-LPLEETEALRAEAAKN-GI-ELVLLTTPTTPTERMKAI 150 (250)
T ss_pred CCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeC-C-CCHHHHHHHHHHHHHc-CC-eEEEEeCCCCCHHHHHHH
Confidence 345766 465211 23568888999999999976 3 5778877777777653 11 123333344446677777
Q ss_pred HhcCCcEEEE-c-c---CC---Cc---HHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQV-S-W---GE---YS---EELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~-~-~---g~---~~---~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+....+|.+ + . |. .+ .+.++++++. +++++. .+++.++++.+.+.|+|++++
T Consensus 151 a~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIV 217 (250)
T PLN02591 151 AEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIV 217 (250)
T ss_pred HHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEE
Confidence 7776666654 1 1 11 12 3456777763 666664 467899999999999999998
No 374
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.51 E-value=3.9 Score=37.80 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=106.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCcee----------ecCC--CCCCHHHHHHHHHHHHhhcCCcEEEEe
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGL----------LRAP--DWEAPDYLRDLIRKTRSLTERPFGVGV 70 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~----------i~~~--~~~~~e~~~~~i~~~r~~~~~p~gvnl 70 (332)
|.+++.-.-|++ .| ++-++--+..+..+|.=.+ ++.+ +..+.+++.+.++++...++.|+.+.+
T Consensus 5 lr~l~~~~~~l~-~p---~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~ 80 (285)
T TIGR02317 5 FRAALAKEDILQ-IP---GAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDA 80 (285)
T ss_pred HHHHHhCCCcEE-eC---CCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 556666445555 33 4667777776767762111 1111 234666677777777777788887754
Q ss_pred ecCCCC----HHHHHHHHhcCCcEEEEcc-------C-------CCcHHHHHHHHh-----CCC--EEEEecC-----CH
Q 020013 71 VLAFPH----NENIKAILSEKVAVLQVSW-------G-------EYSEELVLEAHS-----AGV--KVVPQVG-----SF 120 (332)
Q Consensus 71 ~~~~~~----~~~~~~~~~~~~~~I~~~~-------g-------~~~~~~i~~~~~-----~g~--~v~~~v~-----s~ 120 (332)
=.-... ...++.+.+.|+..|++-- | .+..+.+++++. .+. .|+.-.. ..
T Consensus 81 d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~ 160 (285)
T TIGR02317 81 DTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGL 160 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCH
Confidence 221111 2346778889999987621 1 123345555542 132 3332221 24
Q ss_pred HHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcE---EeecCcCCHHHHHHHHHcCcceee
Q 020013 121 DEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPI---IAAGGIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 121 ~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPv---iaaGGI~~~~~v~~al~~GA~gV~ 193 (332)
+++ +...++|+|.|.+.|. .+...+.++.+.+ +.|+ +..+|-...-++.++-++|..-|.
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~g~----------~~~e~i~~~~~~i---~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~ 227 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPEAL----------TSLEEFRQFAKAV---KVPLLANMTEFGKTPLFTADELREAGYKMVI 227 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCC----------CCHHHHHHHHHhc---CCCEEEEeccCCCCCCCCHHHHHHcCCcEEE
Confidence 444 4466889999999653 1244566777766 5787 344554222367778889999999
Q ss_pred eccccccC
Q 020013 194 LGTRFVAS 201 (332)
Q Consensus 194 ~GT~fl~t 201 (332)
.|...+.+
T Consensus 228 ~~~~~~~a 235 (285)
T TIGR02317 228 YPVTAFRA 235 (285)
T ss_pred EchHHHHH
Confidence 99876655
No 375
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=94.45 E-value=1.4 Score=39.98 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=77.6
Q ss_pred CCcHHHHHHHHhCCC--------ceeecCC--C--CCCHHHHHHHHHHHHhhcCCcEEE-EeecCCC--C-HH----HHH
Q 020013 22 ISGPELVAAVANAGG--------LGLLRAP--D--WEAPDYLRDLIRKTRSLTERPFGV-GVVLAFP--H-NE----NIK 81 (332)
Q Consensus 22 ~s~~~la~avs~aGg--------lG~i~~~--~--~~~~e~~~~~i~~~r~~~~~p~gv-nl~~~~~--~-~~----~~~ 81 (332)
.-+-.+|..+.++|. +|....+ + -.+.|++....+.++.-.+.+|-+ ++.+..- . ++ ..+
T Consensus 23 aYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~r 102 (261)
T PF02548_consen 23 AYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGR 102 (261)
T ss_dssp --SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHH
Confidence 346677777777752 2222221 0 124455555556666655555554 3322111 1 12 234
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEecC-----------------CHH-------HHHHHHHcCCCEEEEe
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVG-----------------SFD-------EARKAVNAGVDAIIVQ 137 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~v~-----------------s~~-------~a~~a~~~g~D~ivv~ 137 (332)
.+.+.|+|.|-+-.|....+.++.+.+.||+|+..++ +.+ +|+..+++|+=.|+++
T Consensus 103 l~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE 182 (261)
T PF02548_consen 103 LMKEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLE 182 (261)
T ss_dssp HHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEE
T ss_pred HHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeee
Confidence 5556899999997665667899999999999997652 333 3445678999999996
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG 173 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG 173 (332)
.. ...+-..|.+.+ +||+|..|
T Consensus 183 ~v-----------p~~la~~It~~l---~IPtIGIG 204 (261)
T PF02548_consen 183 CV-----------PAELAKAITEAL---SIPTIGIG 204 (261)
T ss_dssp SB-----------BHHHHHHHHHHS---SS-EEEES
T ss_pred cC-----------HHHHHHHHHHhC---CCCEEecC
Confidence 43 134566777777 89999544
No 376
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.42 E-value=0.45 Score=43.85 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCC-------------------------
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEY------------------------- 98 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~------------------------- 98 (332)
+++.+.+.++++|+.++.|+.+.+-..... .+.++.+.+.|+|+|.++.+..
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~ 225 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPI 225 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHH
Confidence 567888899999987788998887654332 3445667788999998752100
Q ss_pred ---cHHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 ---SEELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 ---~~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..++++.+++. +++++. .+.+.+++.+....|+|.|-+
T Consensus 226 ~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~v 271 (289)
T cd02810 226 RPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQV 271 (289)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheE
Confidence 02345555543 577774 578999999999999999977
No 377
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.41 E-value=0.43 Score=44.22 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=66.9
Q ss_pred HHHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee-cCcCCHHHHH----HHHHcCcceeeec
Q 020013 122 EARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA-GGIVDARGYV----AALSLGAQGICLG 195 (332)
Q Consensus 122 ~a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa-GGI~~~~~v~----~al~~GA~gV~~G 195 (332)
..+...+.| +|+|++-|..+-++......-..++..+++...+ ++||++. |+.++ +++. .+-++|||+|++.
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~~~t-~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-QIALIAQVGSVNL-KEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC-CCcEEEecCCCCH-HHHHHHHHHHHHhCCCEEEEe
Confidence 345567889 9999997664444331212234556666666543 6898866 55644 4443 3345899999998
Q ss_pred cccccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 196 TRFVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 196 T~fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
..+.... +...-+-|++......+.. ..+++. |+..+..+....+.++.+
T Consensus 104 ~P~y~~~~~~~i~~yf~~v~~~~~~lp-v~lYn~---P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 104 TPFYYKFSFPEIKHYYDTIIAETGGLN-MIVYSI---PFLTGVNMGIEQFGELYK 154 (290)
T ss_pred CCcCCCCCHHHHHHHHHHHHhhCCCCC-EEEEeC---ccccccCcCHHHHHHHhc
Confidence 8766543 2222222333222222333 234542 444455566566655543
No 378
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.40 E-value=0.43 Score=44.19 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=51.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+.++......-..++..+++...+ ++|||+.-|- +-++..+ +-++|||++++-..
T Consensus 26 l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 26 HVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG-RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678899999997765444432222235566666776643 6999987775 4455433 34589999999888
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 104 ~y~~ 107 (289)
T cd00951 104 YLTE 107 (289)
T ss_pred CCCC
Confidence 7653
No 379
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.38 E-value=0.94 Score=43.39 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=36.3
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|..+..+++.. ++||++= ||.+.+++..+..+|+|+|+++.
T Consensus 215 ~~w~~i~~l~~~~---~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 215 LSPRDIEEIAGYS---GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCHHHHHHHHHhc---CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 4577888888876 7999965 79999999999999999998843
No 380
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.37 E-value=0.34 Score=42.40 Aligned_cols=99 Identities=26% Similarity=0.375 Sum_probs=61.6
Q ss_pred EecCCHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cC-c-CCH-------HH
Q 020013 115 PQVGSFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GG-I-VDA-------RG 180 (332)
Q Consensus 115 ~~v~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GG-I-~~~-------~~ 180 (332)
..+.|++++..|.+.|+|-|=+ .+.+.||-+ +++.++..+++.. ++||.+- || . .|. ++
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~~GGlT----PS~g~i~~~~~~~---~ipv~vMIRpr~gdF~Ys~~E~~~M~~d 77 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLEVGGLT----PSLGLIRQAREAV---DIPVHVMIRPRGGDFVYSDEEIEIMKED 77 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGGGT-B-------HHHHHHHHHHT---TSEEEEE--SSSS-S---HHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCccCCCcC----cCHHHHHHHHhhc---CCceEEEECCCCCCccCCHHHHHHHHHH
Confidence 4578999999999999999976 445667664 5678888888766 7887652 44 2 233 34
Q ss_pred HHHHHHcCcceeeeccccccCccCCCCHHHHHHHhc-CCCceEE
Q 020013 181 YVAALSLGAQGICLGTRFVASEESYAHPEYKRKLVE-MDKTEYT 223 (332)
Q Consensus 181 v~~al~~GA~gV~~GT~fl~t~Es~~~~~~k~~~~~-~~~t~~t 223 (332)
+..+..+||||+++|- .+++.......-+.+++ ++....|
T Consensus 78 I~~~~~~GadG~VfG~---L~~dg~iD~~~~~~Li~~a~~~~~t 118 (201)
T PF03932_consen 78 IRMLRELGADGFVFGA---LTEDGEIDEEALEELIEAAGGMPVT 118 (201)
T ss_dssp HHHHHHTT-SEEEE-----BETTSSB-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCeeEEEe---ECCCCCcCHHHHHHHHHhcCCCeEE
Confidence 5566679999999983 35555677666555555 5655444
No 381
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.29 E-value=4.5 Score=37.56 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=104.6
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceee-----------cCC--CCCCHHHHHHHHHHHHhhcCCcEEEE
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLL-----------RAP--DWEAPDYLRDLIRKTRSLTERPFGVG 69 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i-----------~~~--~~~~~e~~~~~i~~~r~~~~~p~gvn 69 (332)
|.+++.-.-|++ .| ++-++--|..+.++|.=.+. +.+ +..+.+++.+.++++...++.|+-+.
T Consensus 9 lr~ll~~~~~l~-~p---~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD 84 (292)
T PRK11320 9 FRAALAAEKPLQ-IV---GTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVD 84 (292)
T ss_pred HHHHHcCCCcEE-ec---CCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 455665445665 22 56677777777777621111 111 13455666677777777777887665
Q ss_pred eecCCCC----HHHHHHHHhcCCcEEEEcc-------C-------CCcHHHHHHHHh-----CCC--EEEEecC-----C
Q 020013 70 VVLAFPH----NENIKAILSEKVAVLQVSW-------G-------EYSEELVLEAHS-----AGV--KVVPQVG-----S 119 (332)
Q Consensus 70 l~~~~~~----~~~~~~~~~~~~~~I~~~~-------g-------~~~~~~i~~~~~-----~g~--~v~~~v~-----s 119 (332)
+=.-... ...++.+.+.|+..|++-- | .+.++.+++++. .+. .|+.-.. .
T Consensus 85 ~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g 164 (292)
T PRK11320 85 IDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEG 164 (292)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccC
Confidence 3211111 3447778889999987721 1 123455555542 133 3332221 2
Q ss_pred HHHH----HHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE---eecCcCCHHHHHHHHHcCccee
Q 020013 120 FDEA----RKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII---AAGGIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 120 ~~~a----~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi---aaGGI~~~~~v~~al~~GA~gV 192 (332)
.+++ +...++|+|.|.+.|. .+..-+.++.+.+ +.|++ ..+|-...-++.+.-++|..-|
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~~----------~~~~~i~~~~~~~---~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v 231 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEAM----------TELEMYRRFADAV---KVPILANITEFGATPLFTTEELASAGVAMV 231 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCC----------CCHHHHHHHHHhc---CCCEEEEeccCCCCCCCCHHHHHHcCCcEE
Confidence 4444 4467899999999653 1245566777666 57873 3455321135667778999999
Q ss_pred eeccccccC
Q 020013 193 CLGTRFVAS 201 (332)
Q Consensus 193 ~~GT~fl~t 201 (332)
..|+..+.+
T Consensus 232 ~~~~~~~~a 240 (292)
T PRK11320 232 LYPLSAFRA 240 (292)
T ss_pred EEChHHHHH
Confidence 999876543
No 382
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.24 E-value=1.1 Score=44.17 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=77.1
Q ss_pred EEEeecCCCC-----HHHHHHHHhcCCcEEEEccCCC-c---HHHHHHHHhCCCEEEEec-------CC----HHHHHHH
Q 020013 67 GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY-S---EELVLEAHSAGVKVVPQV-------GS----FDEARKA 126 (332)
Q Consensus 67 gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g~~-~---~~~i~~~~~~g~~v~~~v-------~s----~~~a~~a 126 (332)
|.|++...++ ..+++.+.+.|+|++-+.-... . ...++.+++.|..+...+ ++ .+.++.+
T Consensus 93 G~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 93 GQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred cccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 5576655443 2347888899999987642221 1 245667788888754322 12 2456778
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceeeec
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~~G 195 (332)
.+.|+|.|.+.-. .|.. .+.....++..+++.. ++||-.-+ |.+ ..+..+|+.+||+.|-..
T Consensus 173 ~~~Gad~I~IkDt--aG~l-~P~~v~~Lv~alk~~~---~~pi~~H~Hnt~GlA-~An~laAieAGad~vD~a 238 (468)
T PRK12581 173 VEMGADSICIKDM--AGIL-TPKAAKELVSGIKAMT---NLPLIVHTHATSGIS-QMTYLAAVEAGADRIDTA 238 (468)
T ss_pred HHcCCCEEEECCC--CCCc-CHHHHHHHHHHHHhcc---CCeEEEEeCCCCccH-HHHHHHHHHcCCCEEEee
Confidence 8999999988433 3433 3344567777777644 67876543 553 466677888999977654
No 383
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=94.22 E-value=0.65 Score=37.60 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=47.9
Q ss_pred HHHhCCCEEEE---ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcC-C
Q 020013 105 EAHSAGVKVVP---QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIV-D 177 (332)
Q Consensus 105 ~~~~~g~~v~~---~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~-~ 177 (332)
.+++.|..|+- .++..+-++.+.+.++|+|.+..-- +.| +..++++.+.+++ .++||+..|++. .
T Consensus 22 ~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~-t~~-------~~~~~~~~~~l~~~gl~~v~vivGG~~~i~ 93 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLY-GHG-------EIDCKGLREKCDEAGLKDILLYVGGNLVVG 93 (128)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc-cCC-------HHHHHHHHHHHHHCCCCCCeEEEECCCCCC
Confidence 45667777762 3344445566778899999885431 112 3334444443321 268888888863 2
Q ss_pred HHH----HHHHHHcCcceee
Q 020013 178 ARG----YVAALSLGAQGIC 193 (332)
Q Consensus 178 ~~~----v~~al~~GA~gV~ 193 (332)
+++ ..++.++|.++|.
T Consensus 94 ~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 94 KQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred hhhhHHHHHHHHHcCCCEEE
Confidence 333 3557789988776
No 384
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.21 E-value=0.63 Score=43.23 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEcc---C-----------------CC--c---
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW---G-----------------EY--S--- 99 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~~---g-----------------~~--~--- 99 (332)
.+++.+.+.++++|+.++.|+.+.+-....+ .+..+.+.+.|+|.|.++. + .. +
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~ 219 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIK 219 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhh
Confidence 3678889999999988788988886532211 3445567788999998751 1 00 0
Q ss_pred ---HHHHHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 100 ---EELVLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 100 ---~~~i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+.++++ .+++|+. .+.+.+++.+++..|+|.|.+
T Consensus 220 ~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 220 PIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQV 262 (300)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceee
Confidence 134555555 3677774 578999999999999999987
No 385
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.19 E-value=0.46 Score=44.49 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+.++......-..++..+++.+++ ++|||+.=|=.+.+++.+ +-++|||++++-+.
T Consensus 34 lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 34 LVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG-RVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678999999997664444331222235556666766643 699886555334455433 34589999999988
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 113 ~y~~ 116 (309)
T cd00952 113 MWLP 116 (309)
T ss_pred cCCC
Confidence 7654
No 386
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.19 E-value=2.2 Score=42.27 Aligned_cols=111 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCcEEEEccCCC-c---HHHHHHHHhCCCEEEEec-------CCH----HHHHHHHHcCCCEEEEecCCCC
Q 020013 78 ENIKAILSEKVAVLQVSWGEY-S---EELVLEAHSAGVKVVPQV-------GSF----DEARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~-~---~~~i~~~~~~g~~v~~~v-------~s~----~~a~~a~~~g~D~ivv~G~eaG 142 (332)
..++.+.++|++.|.+..... . ...++.+++.|..+...+ .+. +.++.+.+.|+|.|.+.-. .
T Consensus 99 ~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt--~ 176 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDM--A 176 (467)
T ss_pred HHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCc--c
Confidence 347888899999987753221 1 134566677888765322 122 3466778899999988433 3
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHHHHHHcCcceeeec
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~~al~~GA~gV~~G 195 (332)
|.. .+.....++..+++.+ ++||-.- -|.+ ..+..+|+.+||+.|-..
T Consensus 177 G~l-~P~~v~~Lv~~lk~~~---~vpI~~H~Hnt~GlA-~AN~laAieaGad~vD~s 228 (467)
T PRK14041 177 GLL-TPKRAYELVKALKKKF---GVPVEVHSHCTTGLA-SLAYLAAVEAGADMFDTA 228 (467)
T ss_pred CCc-CHHHHHHHHHHHHHhc---CCceEEEecCCCCcH-HHHHHHHHHhCCCEEEee
Confidence 443 3445577888888776 5777554 3553 466777888999987653
No 387
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=94.16 E-value=5 Score=38.11 Aligned_cols=178 Identities=17% Similarity=0.176 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHHhCC---Cceeec-C-C---CCCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhcCCcEE
Q 020013 21 DISGPELVAAVANAG---GLGLLR-A-P---DWEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSEKVAVL 91 (332)
Q Consensus 21 g~s~~~la~avs~aG---glG~i~-~-~---~~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~~~~~I 91 (332)
.+.+.+++.++-+|. ..++|- . . .+...+.+...++.+.+... .|+.+++=--. +.+.+..+++.|...|
T Consensus 22 N~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~-~~e~i~~Ai~~GFtSV 100 (347)
T TIGR01521 22 NVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGN-SPATCQRAIQLGFTSV 100 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC-CHHHHHHHHHcCCCEE
Confidence 356777777776653 233331 1 1 13345566666666665553 78888763222 3567888899999988
Q ss_pred EEccCC--------CcH-------HHHHHHHhCCCEEE-----------------------------EecCCHHHHHHHH
Q 020013 92 QVSWGE--------YSE-------ELVLEAHSAGVKVV-----------------------------PQVGSFDEARKAV 127 (332)
Q Consensus 92 ~~~~g~--------~~~-------~~i~~~~~~g~~v~-----------------------------~~v~s~~~a~~a~ 127 (332)
-+.... +.+ ++++.++..|+.|= ...+++++|+...
T Consensus 101 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv 180 (347)
T TIGR01521 101 MMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFV 180 (347)
T ss_pred eecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHH
Confidence 776332 222 34455555554331 0145778888866
Q ss_pred H-cCCCEEEE-ecCCCCcccC--CCC---chhhhHHHHHHHhCCCCCcEEeecCcCCH----------------------
Q 020013 128 N-AGVDAIIV-QGREAGGHVI--GQD---GLISLLPMVVDLIGDRDIPIIAAGGIVDA---------------------- 178 (332)
Q Consensus 128 ~-~g~D~ivv-~G~eaGGh~~--~~~---~~~~ll~~i~~~~~~~~iPviaaGGI~~~---------------------- 178 (332)
+ .|+|.+-+ .|.-=|-... .+. -.+.++.+|.+.++ ++|++.-||=+.+
T Consensus 181 ~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~--~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~ 258 (347)
T TIGR01521 181 KKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP--DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPV 258 (347)
T ss_pred HHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC--CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCH
Confidence 4 69998876 2321111111 011 34788888888762 5999999988766
Q ss_pred HHHHHHHHcCcceeeeccccccC
Q 020013 179 RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 179 ~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+++.+++.+|..-|=++|.+..+
T Consensus 259 e~i~~ai~~GI~KVNi~Tdl~~a 281 (347)
T TIGR01521 259 EEIVEGIKYGVRKVNIDTDLRLA 281 (347)
T ss_pred HHHHHHHHCCCeeEEeChHHHHH
Confidence 78888999999988888876543
No 388
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.14 E-value=0.57 Score=43.35 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=66.8
Q ss_pred HHHHHHHc-CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeecc
Q 020013 122 EARKAVNA-GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGT 196 (332)
Q Consensus 122 ~a~~a~~~-g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT 196 (332)
.++...+. |+|+|++-|..+.++......-..++..+++...+ ++|||+.=|-.+.+++. .+..+|||++++-.
T Consensus 26 ~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 26 IVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-KVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34556778 99999997664444432211234556666666543 68988733322344433 44568999999988
Q ss_pred ccccCc-cCCCCHHHHHHHhcCC-CceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 197 RFVASE-ESYAHPEYKRKLVEMD-KTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 197 ~fl~t~-Es~~~~~~k~~~~~~~-~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
.+.... +...-+ |=+.+.++. +..+ .+++. |...+..+...++.++.+
T Consensus 105 P~y~~~~~~~i~~-~~~~v~~a~~~lpi-~iYn~---P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 105 PFYYKFSFEEIKD-YYREIIAAAASLPM-IIYHI---PALTGVNLTLEQFLELFE 154 (288)
T ss_pred CCCCCCCHHHHHH-HHHHHHHhcCCCCE-EEEeC---ccccCCCCCHHHHHHHhc
Confidence 876542 212222 223334443 4332 33432 444445566666665544
No 389
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=94.14 E-value=5.5 Score=37.93 Aligned_cols=151 Identities=11% Similarity=0.003 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcC-----------CcEEEEccCCCc--------HHHHHHHHhCC
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEK-----------VAVLQVSWGEYS--------EELVLEAHSAG 110 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~-----------~~~I~~~~g~~~--------~~~i~~~~~~g 110 (332)
+...+..+.+....|+.+++=--... .+.++.+++.+ ...|=+.....| .++++.++..|
T Consensus 87 ~~~~v~~~Ae~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~G 166 (357)
T TIGR01520 87 GAHHVHSIAEHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIK 166 (357)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 44455555555577888875322221 14567777765 555555422222 24455566666
Q ss_pred CEEE---------------------EecCCHHHHHHHHH-c----CCCEEEE-ecCCCCccc-CCCCchhhhHHHHHHHh
Q 020013 111 VKVV---------------------PQVGSFDEARKAVN-A----GVDAIIV-QGREAGGHV-IGQDGLISLLPMVVDLI 162 (332)
Q Consensus 111 ~~v~---------------------~~v~s~~~a~~a~~-~----g~D~ivv-~G~eaGGh~-~~~~~~~~ll~~i~~~~ 162 (332)
+.|= ...+++++|+...+ . |+|.+-+ .|.-=|-.. ..+.-.+.+|.++.+.+
T Consensus 167 vsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~ 246 (357)
T TIGR01520 167 MWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYV 246 (357)
T ss_pred CEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHH
Confidence 5441 11357888888764 2 8899876 343222221 12234588888885332
Q ss_pred -CCCCCc------EEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 163 -GDRDIP------IIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 163 -~~~~iP------viaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
...++| ++.-||=+.+ +++.+++.+|..-|=++|.+..+
T Consensus 247 ~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl~~A 293 (357)
T TIGR01520 247 SEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQWA 293 (357)
T ss_pred HHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHH
Confidence 112566 8887765555 88999999999999999987544
No 390
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=94.13 E-value=2.4 Score=37.66 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=80.6
Q ss_pred HHHHHhhc--CCcEEEEeecCCCCHHHHHH---HHhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 55 IRKTRSLT--ERPFGVGVVLAFPHNENIKA---ILSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 55 i~~~r~~~--~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
++++++.. +.|+-+.++..+ .++.++. +.+....++. +..-..--+.++.+++.|+++-.+ |-|++++..+.
T Consensus 43 ~~~i~~~~~~~~~v~~Qv~~~d-~e~mi~ea~~l~~~~~ni~IKIP~T~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~Aa 121 (220)
T PRK12653 43 LPQLHEAMGGQGRLFAQVMATT-AEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSA 121 (220)
T ss_pred HHHHHHHhCCCCcEEEEEecCC-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHcCCCeeEEEecCHHHHHHHH
Confidence 44454443 246666665432 2333333 3334445433 332111135677888899998755 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.+|+++|-. -|+ +.-|+ ..+.++.++.+.++. ..-+-|.+..+.+.+++.+++.+|+|.+-+.
T Consensus 122 ~aGa~yIspyvgR~~~~g~-----dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12653 122 LAGAEYVAPYVNRIDAQGG-----SGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLP 187 (220)
T ss_pred hcCCcEEEeecChHhhcCC-----ChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECC
Confidence 999999865 232 11111 124455555554421 1234566667889999999999999988763
No 391
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.13 E-value=1.7 Score=44.44 Aligned_cols=135 Identities=15% Similarity=0.230 Sum_probs=82.3
Q ss_pred HHHHHHHhh-cCCcE-----EEEeecCCCC-----HHHHHHHHhcCCcEEEEccCCC-cH---HHHHHHHhCCCEEEEec
Q 020013 53 DLIRKTRSL-TERPF-----GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSAGVKVVPQV 117 (332)
Q Consensus 53 ~~i~~~r~~-~~~p~-----gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~~g~~v~~~v 117 (332)
+.++.+++. .+.++ |.|++.+..+ ...++.+.++|+++|.+..... .. ..++.+++.|..+-..+
T Consensus 65 e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i 144 (593)
T PRK14040 65 ERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTL 144 (593)
T ss_pred HHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 334555443 34454 4566655443 2347788899999987753221 12 35667788888642211
Q ss_pred ---CCH--------HHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEee----cCcCCHHHHH
Q 020013 118 ---GSF--------DEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAA----GGIVDARGYV 182 (332)
Q Consensus 118 ---~s~--------~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaa----GGI~~~~~v~ 182 (332)
.++ +-++.+.+.|+|.|.+.-. .|.. .+.....+++.+++.+ ++||-.- -|.+ ..+..
T Consensus 145 ~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt--~G~l-~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~GlA-~An~l 217 (593)
T PRK14040 145 SYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDM--AGLL-KPYAAYELVSRIKKRV---DVPLHLHCHATTGLS-TATLL 217 (593)
T ss_pred EEeeCCccCHHHHHHHHHHHHHcCCCEEEECCC--CCCc-CHHHHHHHHHHHHHhc---CCeEEEEECCCCchH-HHHHH
Confidence 122 3456778899999988433 3332 3445577888888776 5777554 3453 35566
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+||+.|..
T Consensus 218 aAieAGa~~vD~ 229 (593)
T PRK14040 218 KAIEAGIDGVDT 229 (593)
T ss_pred HHHHcCCCEEEe
Confidence 778899997764
No 392
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.15 Score=44.96 Aligned_cols=63 Identities=29% Similarity=0.427 Sum_probs=43.8
Q ss_pred HHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 125 KAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 125 ~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.+.++|+|+|.- .|+..+|- +..-+.-+++.++. .+.|=++|||.|.+++.+++.+||.-+-.
T Consensus 148 i~~~aGAdFVKTSTGf~~~gA------T~edv~lM~~~vg~-~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 148 IAIEAGADFVKTSTGFSAGGA------TVEDVKLMKETVGG-RVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred HHHHhCCCEEEcCCCCCCCCC------CHHHHHHHHHHhcc-CceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 356899999986 34543332 23344444444432 68899999999999999999999665443
No 393
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.11 E-value=0.46 Score=45.50 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=82.4
Q ss_pred EEEEeecCCCC-----HHHHHHHHhcCCcEEEEccC-CCcHH---HHHHHHhCCCEEEEe-------cCCH----HHHHH
Q 020013 66 FGVGVVLAFPH-----NENIKAILSEKVAVLQVSWG-EYSEE---LVLEAHSAGVKVVPQ-------VGSF----DEARK 125 (332)
Q Consensus 66 ~gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g-~~~~~---~i~~~~~~g~~v~~~-------v~s~----~~a~~ 125 (332)
-|.|++....+ +.+++.+.++|.|++-+.-. ..+.+ -++..++.|..+-.. ++++ +-+++
T Consensus 85 RGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ake 164 (472)
T COG5016 85 RGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKE 164 (472)
T ss_pred ccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHH
Confidence 37888875543 45677788899999876411 12333 345566677654322 3343 45778
Q ss_pred HHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEE----eecCcCCHHHHHHHHHcCcceeeec
Q 020013 126 AVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPII----AAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 126 a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvi----aaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
.++.|+|.|++.-. .|-. .+.....++..+++.+ ++||- +..|+ ..-...+++.+|+|++-..
T Consensus 165 l~~~g~DSIciKDm--aGll-tP~~ayelVk~iK~~~---~~pv~lHtH~TsG~-a~m~ylkAvEAGvD~iDTA 231 (472)
T COG5016 165 LLEMGVDSICIKDM--AGLL-TPYEAYELVKAIKKEL---PVPVELHTHATSGM-AEMTYLKAVEAGVDGIDTA 231 (472)
T ss_pred HHHcCCCEEEeecc--cccC-ChHHHHHHHHHHHHhc---CCeeEEecccccch-HHHHHHHHHHhCcchhhhh
Confidence 88999999999644 3443 4456688999998887 68876 46788 4566677888999988643
No 394
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.08 E-value=4.9 Score=37.19 Aligned_cols=147 Identities=10% Similarity=0.118 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCC---CHHHHHHHHhcCCcEEEEc----------cC-------CCcHHHHHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP---HNENIKAILSEKVAVLQVS----------WG-------EYSEELVLE 105 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~---~~~~~~~~~~~~~~~I~~~----------~g-------~~~~~~i~~ 105 (332)
.+.+++...++.+...++.|+.+..=.-.. ..+.++.+.+.|+..|.+- .| .+..+.+++
T Consensus 61 ~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~k 140 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGK 140 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHH
Confidence 455666666666666677886554322111 1344677788999999871 11 123344444
Q ss_pred HH---hC----CCEEEEe----c--CCHHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC--CC
Q 020013 106 AH---SA----GVKVVPQ----V--GSFDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD--RD 166 (332)
Q Consensus 106 ~~---~~----g~~v~~~----v--~s~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~--~~ 166 (332)
++ +. .+.|+.- + ...++ ++.+.++|+|+|.+.+ +.. +..-+.++.+.++. .+
T Consensus 141 I~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~----~~~-----~~~ei~~~~~~~~~~~p~ 211 (285)
T TIGR02320 141 IRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS----RKK-----DPDEILEFARRFRNHYPR 211 (285)
T ss_pred HHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC----CCC-----CHHHHHHHHHHhhhhCCC
Confidence 43 22 2445443 1 12333 4557789999999962 111 12333444444321 14
Q ss_pred CcEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 167 IPIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 167 iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+|++...+-...-++.++-++|+.-|..|...+..
T Consensus 212 ~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 212 TPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 68876554212235777788999999998876644
No 395
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=94.01 E-value=4.3 Score=36.31 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=98.2
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|--++..+ ++|+-|+..-.+-..-.--.+.+..+++....+++ +=+.. .++.++.+++.+|+-|.+-
T Consensus 24 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lN--lE~a~-~~em~~ia~~~kP~~vtLVPE~r~E~ 100 (239)
T PRK05265 24 PDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELN--LEMAA-TEEMLDIALEVKPHQVTLVPEKREEL 100 (239)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEE--eccCC-CHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 4554444444 45666655332110000012234455554444544 43332 3789999999999998753
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEec-CCHHHHHHHHHcCCCEEEE-ecCCCCcccCCCCchhhhHHHHHHHh
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQV-GSFDEARKAVNAGVDAIIV-QGREAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v-~s~~~a~~a~~~g~D~ivv-~G~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
.|.. ..++++++++.|+.|-.-+ +++++...+.+.|+|.|=+ .|..+-........-+..+....+..
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~yA~a~~~~~~~el~~~~~aa~~a 180 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGPYADAKTEAEAAELERIAKAAKLA 180 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCcchHHHHHHHHHHHHHH
Confidence 1211 2357888999999876555 4778888999999999977 34322211101111123333322222
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
...++-|=+.-|+ |.+|+...... +-.-|-+|-+++
T Consensus 181 ~~lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsii 217 (239)
T PRK05265 181 ASLGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAII 217 (239)
T ss_pred HHcCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHH
Confidence 2236889999999 89999885442 456666665544
No 396
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.98 E-value=0.63 Score=42.28 Aligned_cols=88 Identities=24% Similarity=0.192 Sum_probs=55.7
Q ss_pred HHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCCC-Cch---hhhHHHHHHHhCCCCCc-EEee
Q 020013 103 VLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIGQ-DGL---ISLLPMVVDLIGDRDIP-IIAA 172 (332)
Q Consensus 103 i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~~-~~~---~~ll~~i~~~~~~~~iP-viaa 172 (332)
++.+++. ...+++.+.+.-.|+.+.++|+|+|.+ |...+ |+.+.. .+. ...++.+.+.. +.| |++.
T Consensus 4 lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~v-Gds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~---~~p~viaD 79 (254)
T cd06557 4 LQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILV-GDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA---PRALVVAD 79 (254)
T ss_pred HHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEE-CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCeEEEe
Confidence 3445554 456778999999999999999999984 53222 443221 222 22333444433 678 6664
Q ss_pred cC---cCC-----HHHHHHHHH-cCcceeee
Q 020013 173 GG---IVD-----ARGYVAALS-LGAQGICL 194 (332)
Q Consensus 173 GG---I~~-----~~~v~~al~-~GA~gV~~ 194 (332)
-+ ..+ .+++.+.+. +||++|.+
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 44 545 444566777 99999998
No 397
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.92 E-value=0.63 Score=43.05 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=66.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+.++......-..++..+++.+++ ++||++.=|=.+-++.. .+-.+|||+|++...
T Consensus 27 ~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 27 LVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4556778899999997765444432222235566666776643 58887443322334433 334589999999888
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+.... +...-+-| +.|.++.+..+ .++. .|+..++.+...+..++.
T Consensus 106 ~~~~~~~~~i~~~~-~~ia~~~~~pv-~lYn---~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 106 YYNKPTQEGLYQHF-KAIAEATDLPI-ILYN---VPGRTGVDILPETVARLA 152 (292)
T ss_pred cCCCCCHHHHHHHH-HHHHhcCCCCE-EEEE---CccccCCCCCHHHHHHHH
Confidence 76543 21122222 33333333332 2443 244445556666666554
No 398
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=93.91 E-value=3 Score=37.22 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=98.9
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|--++..+ ++|+-|+..-.+-..-.--.+.+..+++....+++ +=+.. .++.++.+++.+|+.+.+-
T Consensus 21 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lN--lE~a~-t~em~~ia~~~kP~~vtLVPEkr~E~ 97 (234)
T cd00003 21 PDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELN--LEMAP-TEEMLEIALEVKPHQVTLVPEKREEL 97 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEE--eccCC-CHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 4554444444 45656655322110000012234555555444544 43322 4789999999999998753
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCCC-CchhhhHHHHHHH
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQ-DGLISLLPMVVDL 161 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~-~~~~~ll~~i~~~ 161 (332)
.|.. ..++++++++.|+.|-.-+. ++++.+.+.+.|+|.|=+. |..+-.+.... ..-+..+....+.
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~ 177 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAKL 177 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHH
Confidence 1211 23568889999999876654 6788889999999999773 43222211000 0112222222222
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
....++-|=+.-|+ |.+|+....+. +-.-+-+|-+++
T Consensus 178 a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsii 215 (234)
T cd00003 178 ARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAII 215 (234)
T ss_pred HHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHH
Confidence 22236888899999 89999876653 455666665544
No 399
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.89 E-value=0.56 Score=42.21 Aligned_cols=91 Identities=27% Similarity=0.311 Sum_probs=61.6
Q ss_pred HHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCC---CCcccCCC-Cc---hhhhHHHHHHHhCCCCCcEEee--c
Q 020013 104 LEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGRE---AGGHVIGQ-DG---LISLLPMVVDLIGDRDIPIIAA--G 173 (332)
Q Consensus 104 ~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e---aGGh~~~~-~~---~~~ll~~i~~~~~~~~iPviaa--G 173 (332)
+++++. +..+++.+.+.-.|+.+++.|.+++...|.. +-|..+.. .+ ....+..|.+.+ ++||++. .
T Consensus 2 r~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d~ 78 (238)
T PF13714_consen 2 RQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDADT 78 (238)
T ss_dssp HHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred hhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEccc
Confidence 346766 7788899999999999999999999886641 11333221 12 244455666665 8999976 4
Q ss_pred CcCC-----HHHHHHHHHcCcceeeeccc
Q 020013 174 GIVD-----ARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 174 GI~~-----~~~v~~al~~GA~gV~~GT~ 197 (332)
|-++ .+.+.++.++|+.|+.+=-.
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESB
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeecc
Confidence 6666 45566777899999998655
No 400
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=93.88 E-value=3.9 Score=38.79 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCC-CHHHHHHHHhcC-----------CcEEEEccCCCc--------HHHHHHHHhCC
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEK-----------VAVLQVSWGEYS--------EELVLEAHSAG 110 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~-~~~~~~~~~~~~-----------~~~I~~~~g~~~--------~~~i~~~~~~g 110 (332)
+...+..+.+..+.|+.+++=--.. ..+.+..+++.+ ...|-+.....| .++++..+..|
T Consensus 80 ~~~~v~~~A~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~G 159 (350)
T PRK09197 80 GAKHVHEVAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAG 159 (350)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3344455545557888887632222 134555566655 666655433222 23455566666
Q ss_pred CEEE---------------------EecCCHHHHHHHHH-cCC----CEEEE-ecCCCCccc-CCCCchhhhHHHHHHHh
Q 020013 111 VKVV---------------------PQVGSFDEARKAVN-AGV----DAIIV-QGREAGGHV-IGQDGLISLLPMVVDLI 162 (332)
Q Consensus 111 ~~v~---------------------~~v~s~~~a~~a~~-~g~----D~ivv-~G~eaGGh~-~~~~~~~~ll~~i~~~~ 162 (332)
+.|= ...+++++|+...+ .|+ |.+-+ .|.-=|-.. ..+.-.+.++.++.+.+
T Consensus 160 vsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v 239 (350)
T PRK09197 160 MTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYV 239 (350)
T ss_pred CEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHH
Confidence 5441 01357888888764 577 87766 343222221 12234588899988876
Q ss_pred CC------CCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 163 GD------RDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 163 ~~------~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+ .++|++.-||=+.+ +++.+++.+|..-|=++|.+..+
T Consensus 240 ~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~~a 285 (350)
T PRK09197 240 SKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWA 285 (350)
T ss_pred HHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHHH
Confidence 21 15999988876655 78899999999999999986544
No 401
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=93.84 E-value=0.23 Score=44.65 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEE-ee----c-CCCCHHHHHHHHhcCCcEEEEccCCC--c-H---HHHHHHHhCCCEE
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVG-VV----L-AFPHNENIKAILSEKVAVLQVSWGEY--S-E---ELVLEAHSAGVKV 113 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvn-l~----~-~~~~~~~~~~~~~~~~~~I~~~~g~~--~-~---~~i~~~~~~g~~v 113 (332)
.+.+.+++.++..++. +.++..+ .+ . ....+++++.+.+.|.+.|.++-|.. + . ++++.+++.|.+|
T Consensus 51 ~~~~~l~eki~l~~~~-gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v 129 (244)
T PF02679_consen 51 YPEEILKEKIDLAHSH-GVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV 129 (244)
T ss_dssp STCHHHHHHHHHHHCT-T-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE
T ss_pred cCHHHHHHHHHHHHHc-CCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE
Confidence 4556778788877764 2211111 00 1 11236788999999999999986642 1 1 4667777889999
Q ss_pred EEecCC--------------HHHHHHHHHcCCCEEEEecCCCCcc
Q 020013 114 VPQVGS--------------FDEARKAVNAGVDAIIVQGREAGGH 144 (332)
Q Consensus 114 ~~~v~s--------------~~~a~~a~~~g~D~ivv~G~eaGGh 144 (332)
+..++. ++.++..+++|+|.|++++.|+|-.
T Consensus 130 ~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~ 174 (244)
T PF02679_consen 130 LSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKG 174 (244)
T ss_dssp EEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--S
T ss_pred eecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCC
Confidence 987751 3456667899999999999988743
No 402
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.77 E-value=0.34 Score=45.19 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++.+.+ ++|||+.-|- +-++..+ +-++|||+|++-..
T Consensus 33 li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 33 HLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG-RVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678899999997764444332222235556666666543 6999976664 4444433 34589999999888
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 111 ~y~~ 114 (303)
T PRK03620 111 YLTE 114 (303)
T ss_pred CCCC
Confidence 7653
No 403
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.72 E-value=5.1 Score=36.13 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=103.9
Q ss_pred hhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC--------C----CCCCHHHHHHHHHHHHhhcCCcEEEEee
Q 020013 4 RGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA--------P----DWEAPDYLRDLIRKTRSLTERPFGVGVV 71 (332)
Q Consensus 4 ~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~--------~----~~~~~e~~~~~i~~~r~~~~~p~gvnl~ 71 (332)
.+++.-.-|++ | .++-++-.+..+.++|.=.+... + ...+.+++...++.+...+..|+.+.+-
T Consensus 2 r~l~~~~~~i~---~-~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~ 77 (243)
T cd00377 2 RALLESGGPLV---L-PGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADAD 77 (243)
T ss_pred hhHHhCCCcEE---e-cCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcC
Confidence 34554445665 3 25677777787777763111111 0 1235566667777776667788777643
Q ss_pred cCCCC----HHHHHHHHhcCCcEEEEc-------cC-------CCcHHHHHHHHh------C--CCEEEEe-----c--C
Q 020013 72 LAFPH----NENIKAILSEKVAVLQVS-------WG-------EYSEELVLEAHS------A--GVKVVPQ-----V--G 118 (332)
Q Consensus 72 ~~~~~----~~~~~~~~~~~~~~I~~~-------~g-------~~~~~~i~~~~~------~--g~~v~~~-----v--~ 118 (332)
.-..+ .+.++.+.+.|++.|.+- .| .++++.+++++. . .+.|+.- + .
T Consensus 78 ~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 78 TGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 32111 234666777899999871 01 123445554431 2 4556554 3 2
Q ss_pred CHHH----HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCH--HHHHHHHHcCccee
Q 020013 119 SFDE----ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDA--RGYVAALSLGAQGI 192 (332)
Q Consensus 119 s~~~----a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~--~~v~~al~~GA~gV 192 (332)
+.++ ++.+.++|+|.|.+.+.. +...+.++.+.. +.|+++--.= .+ -+..+.-++|..-|
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~----------~~~~~~~~~~~~---~~Pl~~~~~~-~~~~~~~~~l~~lG~~~v 223 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK----------DPEEIRAFAEAP---DVPLNVNMTP-GGNLLTVAELAELGVRRV 223 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC----------CHHHHHHHHhcC---CCCEEEEecC-CCCCCCHHHHHHCCCeEE
Confidence 4444 445778999999996542 345566777665 6787664211 11 34556667899999
Q ss_pred eecccccc
Q 020013 193 CLGTRFVA 200 (332)
Q Consensus 193 ~~GT~fl~ 200 (332)
.+|...+.
T Consensus 224 ~~~~~~~~ 231 (243)
T cd00377 224 SYGLALLR 231 (243)
T ss_pred EEChHHHH
Confidence 99886543
No 404
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=93.70 E-value=1.6 Score=42.04 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 151 LISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 151 ~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+|..+..+++.. ++|||+- ||.+.+++..++.+|+|+|++.
T Consensus 241 tW~~i~~lr~~~---~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 241 TWEDLAFLREWT---DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CHHHHHHHHHhc---CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 467777777765 7898886 6679999999999999999984
No 405
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.67 E-value=2.3 Score=37.12 Aligned_cols=106 Identities=24% Similarity=0.319 Sum_probs=65.4
Q ss_pred cHHHHHHHHhCCCceeec---CCCCCCHH-HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-C--
Q 020013 24 GPELVAAVANAGGLGLLR---APDWEAPD-YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G-- 96 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~---~~~~~~~e-~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g-- 96 (332)
+-+-+.+++++|. -+|. .- ...|+ .+.+++++.+. ++ .=+|..-..-+..-.+.+.|+|+|-+.. |
T Consensus 87 tlkeVd~L~~~Ga-~IIA~DaT~-R~RP~~~~~~~i~~~k~-~~----~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT 159 (229)
T COG3010 87 TLKEVDALAEAGA-DIIAFDATD-RPRPDGDLEELIARIKY-PG----QLAMADCSTFEEGLNAHKLGFDIIGTTLSGYT 159 (229)
T ss_pred cHHHHHHHHHCCC-cEEEeeccc-CCCCcchHHHHHHHhhc-CC----cEEEeccCCHHHHHHHHHcCCcEEeccccccc
Confidence 4456677777763 2221 21 12244 56666666432 11 1112211112333456678999996532 1
Q ss_pred -------CCcHHHHHHHHhCCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -------EYSEELVLEAHSAGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -------~~~~~~i~~~~~~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.|...+++.+.+.|+.|+. ..+|++.|+++.+.|+++|+|
T Consensus 160 ~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 160 GYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred CCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEE
Confidence 1234688888889999996 588999999999999999999
No 406
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.65 E-value=1.2 Score=42.07 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecC-CC----CHHHHHHHHhcCCcEEEEccCC--------CcHHHHHHHHh-CCC
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLA-FP----HNENIKAILSEKVAVLQVSWGE--------YSEELVLEAHS-AGV 111 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~-~~----~~~~~~~~~~~~~~~I~~~~g~--------~~~~~i~~~~~-~g~ 111 (332)
.+|+.+.+.++.+++.++.|+.+-+-.. .+ ..+.++.+.+.|++.|.+|... ..-++++.+++ .++
T Consensus 116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~i 195 (321)
T PRK10415 116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSI 195 (321)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCC
Confidence 3588899999999888888888765321 11 1244556677899999887321 22356666665 478
Q ss_pred EEEE--ecCCHHHHHHHHH-cCCCEEEE
Q 020013 112 KVVP--QVGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 112 ~v~~--~v~s~~~a~~a~~-~g~D~ivv 136 (332)
+|+. .+.|.++++++.+ .|+|+|.+
T Consensus 196 PVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 196 PVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred cEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 8875 5789999999886 69999988
No 407
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.63 E-value=2.6 Score=43.05 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=77.4
Q ss_pred EEEeecCCCC-----HHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEEe-------cCCHH----HHHHH
Q 020013 67 GVGVVLAFPH-----NENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQ-------VGSFD----EARKA 126 (332)
Q Consensus 67 gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~~-------v~s~~----~a~~a 126 (332)
|.|++...+. ...++.+.+.|+|++-+.-... ....++.+++.|..+... +++++ .++.+
T Consensus 84 g~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l 163 (596)
T PRK14042 84 GQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKL 163 (596)
T ss_pred cccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 3466554432 2367788899999987642221 123466778888876543 23444 45667
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceeee
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~~ 194 (332)
.+.|+|.|.+.-. .|.. .+.....++..+++.+ ++||-.-+ |.+ ..+..+|+.+|||.|-.
T Consensus 164 ~~~Gad~I~IkDt--aG~l-~P~~v~~lv~alk~~~---~ipi~~H~Hnt~Gla-~an~laAieaGad~iD~ 228 (596)
T PRK14042 164 AEMGCDSIAIKDM--AGLL-TPTVTVELYAGLKQAT---GLPVHLHSHSTSGLA-SICHYEAVLAGCNHIDT 228 (596)
T ss_pred HHcCCCEEEeCCc--ccCC-CHHHHHHHHHHHHhhc---CCEEEEEeCCCCCcH-HHHHHHHHHhCCCEEEe
Confidence 8899999988433 3443 3445677888888776 68876543 453 36667788899997654
No 408
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.59 E-value=1.1 Score=41.37 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEcc---C-----------------CC------
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW---G-----------------EY------ 98 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~~---g-----------------~~------ 98 (332)
.+++.+.+.++.+|+.++.|+.+.+-....+ .+.++.+.+.|+|.|.++. | ..
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 216 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIK 216 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccc
Confidence 4678888999999988888999886433221 2445667788999876520 0 00
Q ss_pred --cHHHHHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 99 --SEELVLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 --~~~~i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
..++++.+++ .+++|+. .+.+.+++.++++.|+|.|-+
T Consensus 217 ~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~i 259 (296)
T cd04740 217 PIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQV 259 (296)
T ss_pred hHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 0145566655 3677774 477999999999999999987
No 409
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.59 E-value=2.3 Score=37.53 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=68.6
Q ss_pred cHHHHHHHHhCCCceeecC-CCC-CCH--HHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-C--
Q 020013 24 GPELVAAVANAGGLGLLRA-PDW-EAP--DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-G-- 96 (332)
Q Consensus 24 ~~~la~avs~aGglG~i~~-~~~-~~~--e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g-- 96 (332)
+.+.+..+.++|.= ++.. ... .+| +.+.+.++.+++..+.|+.+.+. ..+.+..+.+.|+|++.++. |
T Consensus 77 ~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~----t~ee~~~a~~~G~d~i~~~~~g~t 151 (221)
T PRK01130 77 TLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS----TLEEGLAAQKLGFDFIGTTLSGYT 151 (221)
T ss_pred CHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC----CHHHHHHHHHcCCCEEEcCCceee
Confidence 44667777788864 3321 111 123 56677778877633445554432 24556778889999986531 1
Q ss_pred -------CCcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -------EYSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -------~~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
....++++++++. +++++. .+.+.+++..+.+.|+|+|++
T Consensus 152 ~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 152 EETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred cCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 1123566777654 677764 467899999999999999988
No 410
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.52 E-value=0.63 Score=42.84 Aligned_cols=122 Identities=15% Similarity=0.244 Sum_probs=66.6
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+.++......-..++..+++.... ++||++.=|=.+.++.. .+-.+|+|+|++...
T Consensus 26 ~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 26 LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 4456678999999997765444432222235556666666643 58876433322444443 334589999999988
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhhc
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWKN 249 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~~ 249 (332)
+.... +...-+-|+ .|.++.+..+ .++.. |+.....+...+.+++.+
T Consensus 105 ~~~~~~~~~l~~~~~-~ia~~~~~pi-~lYn~---P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 105 YYNKPSQEGLYAHFK-AIAEATDLPV-ILYNV---PGRTGVNIEPETVLRLAE 152 (284)
T ss_pred ccCCCCHHHHHHHHH-HHHhcCCCCE-EEEEC---hhHhCCCCCHHHHHHHhc
Confidence 66542 212223333 3333333332 24432 444445566566665543
No 411
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=93.51 E-value=0.34 Score=43.37 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEE-Eeec-----CCCCHHHHHHHHhcCCcEEEEccCC---CcH---HHHHHHHhCCCEEE
Q 020013 47 APDYLRDLIRKTRSLTERPFGV-GVVL-----AFPHNENIKAILSEKVAVLQVSWGE---YSE---ELVLEAHSAGVKVV 114 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gv-nl~~-----~~~~~~~~~~~~~~~~~~I~~~~g~---~~~---~~i~~~~~~g~~v~ 114 (332)
+.+.+++.++..++. +.++.. +.+. ....+++++.+.+.|.+.|.++-|. +.. ++++.+++.|.++.
T Consensus 39 ~~~~l~eki~la~~~-~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 39 DRDIVKEKIEMYKDY-GIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred cHHHHHHHHHHHHHc-CCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 446677777777653 222211 1111 0112567789999999999998663 222 46777888899888
Q ss_pred EecC----------CH----HHHHHHHHcCCCEEEEecCCCCc
Q 020013 115 PQVG----------SF----DEARKAVNAGVDAIIVQGREAGG 143 (332)
Q Consensus 115 ~~v~----------s~----~~a~~a~~~g~D~ivv~G~eaGG 143 (332)
+.++ ++ +.+++.+++|+|.|++++.|+|.
T Consensus 118 ~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~ 160 (237)
T TIGR03849 118 SEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGK 160 (237)
T ss_pred ccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCC
Confidence 6653 22 23445589999999999999875
No 412
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=93.51 E-value=0.5 Score=44.90 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=60.6
Q ss_pred HHHHHHHhC---CCEEEEecCCH----HHHHHHHHc---CCCEEEEecCCCCcccCCCCchhhhHHHHHHH---hCCCCC
Q 020013 101 ELVLEAHSA---GVKVVPQVGSF----DEARKAVNA---GVDAIIVQGREAGGHVIGQDGLISLLPMVVDL---IGDRDI 167 (332)
Q Consensus 101 ~~i~~~~~~---g~~v~~~v~s~----~~a~~a~~~---g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~---~~~~~i 167 (332)
+.++.+++. ..++...+.+. ++|..+.+. ++|+|-++++.. . +.....++..++.. ....++
T Consensus 188 ~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~---~--~g~l~~~v~~vr~~ld~~g~~~v 262 (343)
T PRK08662 188 EAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSS---R--RGNFRKIVREVRWTLDIRGYEHV 262 (343)
T ss_pred HHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCC---C--CccHHHHHHHHHHHHHhcCCCCe
Confidence 345555542 34566555554 677776666 899999977531 0 11223343344332 211246
Q ss_pred cEEeecCcCCHHHHHHHHHcCcceeeeccccccC
Q 020013 168 PIIAAGGIVDARGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 168 PviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t 201 (332)
.+.++||| |.+++.++... .|.+-+||.+...
T Consensus 263 ~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 263 KIFVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred EEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 79999999 99999999999 9999999987643
No 413
>PLN02561 triosephosphate isomerase
Probab=93.48 E-value=1.2 Score=40.40 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHH---HHHHHHhCCCEEEEecCCH--------------HHHHHHHHcCC--
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEE---LVLEAHSAGVKVVPQVGSF--------------DEARKAVNAGV-- 131 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~---~i~~~~~~g~~v~~~v~s~--------------~~a~~a~~~g~-- 131 (332)
-..+.+.+.|++++.++ |++.... -++.+.+.|+..+..++.. ++.+...+ +.
T Consensus 79 vS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~-~v~~ 157 (253)
T PLN02561 79 ISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIAD-KVSD 157 (253)
T ss_pred CCHHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHh-cccc
Confidence 34677888999999875 3432222 2334567899888877743 22323332 22
Q ss_pred --CEEEE-ecCCCCc--ccCCCC---chhhhHHHHH-HHhC---CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 132 --DAIIV-QGREAGG--HVIGQD---GLISLLPMVV-DLIG---DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 132 --D~ivv-~G~eaGG--h~~~~~---~~~~ll~~i~-~~~~---~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
..+++ +...+=| ....+. .....+++.. +... ..++||+-.|+| +++++.+.+. .+.||+.+|++=
T Consensus 158 ~~~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~AS 236 (253)
T PLN02561 158 WANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSV-TGANCKELAAQPDVDGFLVGGAS 236 (253)
T ss_pred ccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCc-CHHHHHHHhcCCCCCeEEEehHh
Confidence 23343 3333322 211111 1122233311 1111 126899999999 8899888765 689999999985
Q ss_pred c
Q 020013 199 V 199 (332)
Q Consensus 199 l 199 (332)
+
T Consensus 237 L 237 (253)
T PLN02561 237 L 237 (253)
T ss_pred h
Confidence 4
No 414
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.46 E-value=3.6 Score=35.48 Aligned_cols=123 Identities=18% Similarity=0.164 Sum_probs=73.5
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCc
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVA 89 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~ 89 (332)
+.|++..-|-. -....++....++|.=.++... ..+++.+.+.++.+++. +.++++-+.......+..+ +...++|
T Consensus 53 ~~~i~~~~~v~-~~~~~~~~~~~~aGad~i~~h~-~~~~~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~-~~~~~~d 128 (202)
T cd04726 53 DKIIVADLKTA-DAGALEAEMAFKAGADIVTVLG-AAPLSTIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAK-LLKLGVD 128 (202)
T ss_pred CCEEEEEEEec-cccHHHHHHHHhcCCCEEEEEe-eCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHH-HHHCCCC
Confidence 56888777742 1222356777788865555321 22345566777777753 4556654333332234343 7777999
Q ss_pred EEEEccC--------CCcHHHHHHHHh-CCCEEEEecC-CHHHHHHHHHcCCCEEEE
Q 020013 90 VLQVSWG--------EYSEELVLEAHS-AGVKVVPQVG-SFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 90 ~I~~~~g--------~~~~~~i~~~~~-~g~~v~~~v~-s~~~a~~a~~~g~D~ivv 136 (332)
.+.++.+ ....+.++.+++ ..+++.+.-+ +.+.+..+.+.|+|++++
T Consensus 129 ~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 129 IVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred EEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEE
Confidence 9876421 122355566654 4556554322 588899999999999998
No 415
>PLN02417 dihydrodipicolinate synthase
Probab=93.44 E-value=0.66 Score=42.77 Aligned_cols=119 Identities=16% Similarity=0.302 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHH----HHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVA----ALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~----al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|+.+-++......-..++..+++...+ ++||++.=|=.+.+++.+ +-++|||+|++-..
T Consensus 27 ~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 27 LVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG-KIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC-CCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455678899999996664444331112224456666666543 689886544334455433 45689999999988
Q ss_pred cccCc-cCCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASE-ESYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~-Es~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+.... +...-+-|+ .+.++. . ..+++. |+..+.-+.-...+++.
T Consensus 106 ~y~~~~~~~i~~~f~-~va~~~--p-i~lYn~---P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 106 YYGKTSQEGLIKHFE-TVLDMG--P-TIIYNV---PGRTGQDIPPEVIFKIA 150 (280)
T ss_pred ccCCCCHHHHHHHHH-HHHhhC--C-EEEEEC---hhHhCcCCCHHHHHHHh
Confidence 76542 212222333 333333 2 335542 44334445555555544
No 416
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.43 E-value=2.3 Score=37.56 Aligned_cols=108 Identities=25% Similarity=0.290 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCceeecCCC-CCCHH--HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-cC----
Q 020013 25 PELVAAVANAGGLGLLRAPD-WEAPD--YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS-WG---- 96 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~-~~~~e--~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~-~g---- 96 (332)
.+.+..+.++|.--++.... ...|+ .+.+.++++++..+.|+.+++.. .+....+.+.|++++.+. .|
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t----~~ea~~a~~~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIST----LEEALNAAKLGFDIIGTTLSGYTEE 157 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC----HHHHHHHHHcCCCEEEccCcccccc
Confidence 34667677788643332111 11232 66777888877655666665432 345667788899998652 12
Q ss_pred -----CCcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 97 -----EYSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 97 -----~~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..++++.+++. +++++. .+.+.+++.++.+.|+|++++
T Consensus 158 ~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 158 TAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred ccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 1223567777653 677775 466899999999999999998
No 417
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=93.43 E-value=4.5 Score=36.17 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=99.7
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|--++..+ ++|.-|+..-.+-..-.--.+.+..+++....++++ =+.. .++.++.+++.+|+-|.+-
T Consensus 21 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNl--E~a~-~~emi~ia~~vkP~~vtLVPEkr~El 97 (237)
T TIGR00559 21 PDPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNI--EMAP-TEEMIRIAEEIKPEQVTLVPEARDEV 97 (237)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEe--ccCC-CHHHHHHHHHcCCCEEEECCCCCCCc
Confidence 4554445455 456556543221100000122345555554445544 3322 4789999999999998753
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCCC-CchhhhHHHHHHH
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQ-DGLISLLPMVVDL 161 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~-~~~~~ll~~i~~~ 161 (332)
.|.. ..++++++++.|+.|-.-+. ++++.+.+.+.|+|.|=+. |..+--+.... ..-+..+....+.
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~ 177 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVH 177 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHH
Confidence 1211 23567889999999865554 6788888999999999773 43322211001 0012222222222
Q ss_pred hCCCCCcEEeecCcCCHHHHHHHHHc-C-cceeeeccccc
Q 020013 162 IGDRDIPIIAAGGIVDARGYVAALSL-G-AQGICLGTRFV 199 (332)
Q Consensus 162 ~~~~~iPviaaGGI~~~~~v~~al~~-G-A~gV~~GT~fl 199 (332)
....++-|=|.-|+ |.+|+...... + -+-|-+|-+++
T Consensus 178 A~~lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsii 216 (237)
T TIGR00559 178 AHSLGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAII 216 (237)
T ss_pred HHHcCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHH
Confidence 22236889999999 89999877664 4 57777776554
No 418
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=93.40 E-value=0.65 Score=42.68 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred HHHHHHHh-CCCEEEEec--CCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCC
Q 020013 101 ELVLEAHS-AGVKVVPQV--GSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVD 177 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~~~v--~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~ 177 (332)
+.++.+++ ..++|+..+ ....|++..++.|+|+| ..+ .. ..+.-.++..++..+ ++|+++ |++|
T Consensus 64 ~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiI--D~T----e~--lrpad~~~~~~K~~f---~~~fma--d~~~ 130 (293)
T PRK04180 64 KMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYI--DES----EV--LTPADEEYHIDKWDF---TVPFVC--GARN 130 (293)
T ss_pred HHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEE--ecc----CC--CCchHHHHHHHHHHc---CCCEEc--cCCC
Confidence 45555554 478887654 45789999999999999 321 11 123446666776655 678765 7888
Q ss_pred HHHHHHHHHcCcceee
Q 020013 178 ARGYVAALSLGAQGIC 193 (332)
Q Consensus 178 ~~~v~~al~~GA~gV~ 193 (332)
-++...++.+|||-|-
T Consensus 131 l~EAlrai~~GadmI~ 146 (293)
T PRK04180 131 LGEALRRIAEGAAMIR 146 (293)
T ss_pred HHHHHHHHHCCCCeee
Confidence 8999999999998553
No 419
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=93.38 E-value=3.6 Score=36.55 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=81.1
Q ss_pred HHHHHhhc--CCcEEEEeecCCCCHHHHHHH---HhcCCcEEE-EccCCCcHHHHHHHHhCCCEEEEe-cCCHHHHHHHH
Q 020013 55 IRKTRSLT--ERPFGVGVVLAFPHNENIKAI---LSEKVAVLQ-VSWGEYSEELVLEAHSAGVKVVPQ-VGSFDEARKAV 127 (332)
Q Consensus 55 i~~~r~~~--~~p~gvnl~~~~~~~~~~~~~---~~~~~~~I~-~~~g~~~~~~i~~~~~~g~~v~~~-v~s~~~a~~a~ 127 (332)
++++++.. +.|+-+.++..+ .++.++.+ .+....++. +..-..--+.++.+++.|+++-.+ |-|+.++..+.
T Consensus 43 ~~~i~~~~~~~~~v~~qv~~~d-~e~mi~eA~~l~~~~~nv~IKIP~T~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa 121 (220)
T PRK12655 43 LPRLQKAIGGEGILFAQTMSRD-AQGMVEEAKRLRNAIPGIVVKIPVTAEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAA 121 (220)
T ss_pred HHHHHHHhCCCCCEEEEEeeCC-HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceeEeEecCHHHHHHHH
Confidence 34444442 346666665432 23333333 333444433 332111135677888899998765 67999999999
Q ss_pred HcCCCEEEE-ecC-CCCcccCCCCchhhhHHHHHHHhCCC-CCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 128 NAGVDAIIV-QGR-EAGGHVIGQDGLISLLPMVVDLIGDR-DIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 128 ~~g~D~ivv-~G~-eaGGh~~~~~~~~~ll~~i~~~~~~~-~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|+++|-. -|+ +.-|+ ..+.++.++.+.+... .-+-|.+..+.+.+++.+++.+|+|.+-+.-
T Consensus 122 ~aGa~yIspyvgR~~~~g~-----dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12655 122 LAGAKYVAPYVNRVDAQGG-----DGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPL 188 (220)
T ss_pred HcCCeEEEeecchHhHcCC-----CHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCH
Confidence 999998865 232 11121 1245566655544211 1245566678899999999999999888643
No 420
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=93.26 E-value=3 Score=36.88 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCCCcHHHHHHH----HhCCCEEE--EecCCHH-
Q 020013 52 RDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGEYSEELVLEA----HSAGVKVV--PQVGSFD- 121 (332)
Q Consensus 52 ~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~----~~~g~~v~--~~v~s~~- 121 (332)
.+.++++++.. .++-..+-..+-. ...++.+.+.++|.+.+|. ....+.++.+ ++.+..++ ...+|..
T Consensus 39 ~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~-~~G~~~l~~~~~~~~~~~~~~~~v~~lss~~~ 116 (216)
T cd04725 39 PEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHP-YGGSDMLKAALEAAEEKGKGLFAVTVLSSPGA 116 (216)
T ss_pred HHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECC-cCCHHHHHHHHHHHhccCCeEEEEEcCCCCCH
Confidence 34566666643 4555555443211 2334556778999999983 2234444443 33344444 3233321
Q ss_pred -H----------------HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHH-----
Q 020013 122 -E----------------ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDAR----- 179 (332)
Q Consensus 122 -~----------------a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~----- 179 (332)
+ ++.+.+.|++++++.+.+ ...+ ++... .+. .+...||+ ++
T Consensus 117 ~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~-----------~~~i---~~~~~-~~~-~~ltPGI~-~~~~~~d 179 (216)
T cd04725 117 LDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE-----------PEAL---RRALG-PDF-LILTPGIG-AQGSGDD 179 (216)
T ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc-----------hHHH---HHhhC-CCC-eEEcCCcC-CCCCccc
Confidence 1 234667888888883221 1122 22221 134 48889995 45
Q ss_pred -----HHHHHHHcCcceeeeccccccCcc
Q 020013 180 -----GYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 180 -----~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
+..+++..|++.+.+|..++.++.
T Consensus 180 q~r~~~~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 180 QKRGGTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred cccccCHHHHHHcCCcEEEEChhhccCCC
Confidence 788899999999999999887754
No 421
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.25 E-value=1.2 Score=42.33 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=67.8
Q ss_pred HHHHHhcCCcEEEEc--cCCC-cH-----------HHHHHHHhCCCEEEEec--C---------------CHH----HHH
Q 020013 80 IKAILSEKVAVLQVS--WGEY-SE-----------ELVLEAHSAGVKVVPQV--G---------------SFD----EAR 124 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~--~g~~-~~-----------~~i~~~~~~g~~v~~~v--~---------------s~~----~a~ 124 (332)
++.+++.|+|+|.++ ++.. +. ++.+.+++.|++++..+ . .++ .++
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r 191 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME 191 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence 567888999998663 3322 21 22345567899987642 1 111 233
Q ss_pred HHH--HcCCCEEEEecCCCC----cccCC-----CCchhhhHHHHHHHhCCCCCcEEe-ecCcCCHHHH----HHHHHcC
Q 020013 125 KAV--NAGVDAIIVQGREAG----GHVIG-----QDGLISLLPMVVDLIGDRDIPIIA-AGGIVDARGY----VAALSLG 188 (332)
Q Consensus 125 ~a~--~~g~D~ivv~G~eaG----Gh~~~-----~~~~~~ll~~i~~~~~~~~iPvia-aGGI~~~~~v----~~al~~G 188 (332)
.+. +.|+|.+.+.=+... |...+ .......+.++.+.. ++|+|. +||. +.+.. ..++..|
T Consensus 192 ~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG~-~~~~f~~~l~~A~~aG 267 (340)
T PRK12858 192 EFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT---DLPFIFLSAGV-SPELFRRTLEFACEAG 267 (340)
T ss_pred HHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC---CCCEEEECCCC-CHHHHHHHHHHHHHcC
Confidence 445 389999998544211 11000 111124455555554 688655 7887 65654 4456689
Q ss_pred c--ceeeecccccc
Q 020013 189 A--QGICLGTRFVA 200 (332)
Q Consensus 189 A--~gV~~GT~fl~ 200 (332)
| .||.+|.....
T Consensus 268 a~f~Gvl~GRniwq 281 (340)
T PRK12858 268 ADFSGVLCGRATWQ 281 (340)
T ss_pred CCccchhhhHHHHh
Confidence 9 99999988553
No 422
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=93.25 E-value=0.11 Score=49.41 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=40.5
Q ss_pred hhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 153 SLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 153 ~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
.+...+++.+ ++||++.|||.+++.+.++++-| ||.|.||..+++.++
T Consensus 281 ~~a~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd 329 (341)
T PF00724_consen 281 DLAEAIKKAV---KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPD 329 (341)
T ss_dssp HHHHHHHHHH---SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TT
T ss_pred hhhhhhhhhc---CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCch
Confidence 4566777777 79999999999888899999877 999999999998765
No 423
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.25 E-value=1.1 Score=41.73 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCC-HHHHHHHHhcCCcEEEEcc-------------------------CC--
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPH-NENIKAILSEKVAVLQVSW-------------------------GE-- 97 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~-~~~~~~~~~~~~~~I~~~~-------------------------g~-- 97 (332)
.+++.+.++++.+++.++.|+.|.+-.+..+ .+.++.+.+.|++.|.++- |.
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s 230 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS 230 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc
Confidence 4678899999999988889999987543221 3556778889999987320 00
Q ss_pred -C---c--HHHHHHHHhC---CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 98 -Y---S--EELVLEAHSA---GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 98 -~---~--~~~i~~~~~~---g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+ | .+++.++++. .++|+. .+.+.+++.+.+.+|||+|-+
T Consensus 231 G~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 231 GPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 0 0 2455566542 477774 478999999999999999977
No 424
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.19 E-value=2.4 Score=38.12 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=77.9
Q ss_pred ccceecCCCCCCCCcHHHHHHHHhC----CCceee-----cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHH
Q 020013 10 EYGIVQAPLGPDISGPELVAAVANA----GGLGLL-----RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENI 80 (332)
Q Consensus 10 ~~Pii~apM~~g~s~~~la~avs~a----GglG~i-----~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~ 80 (332)
+|.++ |=.-|..+.+-|..+++. ++-.+| +...+.-| ++.+.+++.+.+.+.-|-+=- +-.++....
T Consensus 62 ~~~~l--pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llp-d~~~tv~aa~~L~~~Gf~vlp-yc~~d~~~a 137 (250)
T PRK00208 62 GVTLL--PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLP-DPIETLKAAEILVKEGFVVLP-YCTDDPVLA 137 (250)
T ss_pred CCEEC--CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCc-CHHHHHHHHHHHHHCCCEEEE-EeCCCHHHH
Confidence 34555 554567777777666653 443443 33222223 456778888777543343321 223345667
Q ss_pred HHHHhcCCcEEEEc-------cCCCcHHHHHHHHh-CCCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 81 KAILSEKVAVLQVS-------WGEYSEELVLEAHS-AGVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 81 ~~~~~~~~~~I~~~-------~g~~~~~~i~~~~~-~g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+.+.|+++|-.. .|...+++++.+++ .+++|+.. +++++++.++.+.|+|+|++
T Consensus 138 k~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 138 KRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred HHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 77888899998331 12223567787776 47888854 67999999999999999998
No 425
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=93.19 E-value=0.51 Score=44.94 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=55.8
Q ss_pred CHHHHHHHHHc-CCCE--EEEecC-----------C--CCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCHH
Q 020013 119 SFDEARKAVNA-GVDA--IIVQGR-----------E--AGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDAR 179 (332)
Q Consensus 119 s~~~a~~a~~~-g~D~--ivv~G~-----------e--aGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~~ 179 (332)
+.+++..+.+. |.|. |=++-+ + .+.+. ..-....++.++++.+.. .++-|+++||| |.+
T Consensus 215 ~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~-~~G~~~~l~~~vr~~Ld~~g~~~vkI~aSgGi-ne~ 292 (352)
T PRK07188 215 VITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFD-PRGVNPELIKALRKALDENGGKHVKIIVSSGF-DAK 292 (352)
T ss_pred cHHHHHHHHHHhCCCccEEEeCCcchHhhhhcccccccccccc-cccccHHHHHHHHHHHhhCCCCCcEEEEeCCC-CHH
Confidence 78888887776 8887 533211 0 00000 001235566677665532 25679999999 999
Q ss_pred HHHHHHHcC--cceeeeccccccCc
Q 020013 180 GYVAALSLG--AQGICLGTRFVASE 202 (332)
Q Consensus 180 ~v~~al~~G--A~gV~~GT~fl~t~ 202 (332)
++.++.+.| .|+.-+||.+..++
T Consensus 293 ~I~~~~~~g~piD~~GVGt~l~~~~ 317 (352)
T PRK07188 293 KIREFEAQNVPVDIYGVGSSLLKIN 317 (352)
T ss_pred HHHHHHHcCCCccEEecCcccccCc
Confidence 999999999 59999999999865
No 426
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.18 E-value=4.8 Score=40.21 Aligned_cols=113 Identities=12% Similarity=0.200 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc----HHHHHHHHhCCCEEEEe-------cCCHH----HHHHHHHcCCCEEEEecCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQ-------VGSFD----EARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~----~~~i~~~~~~g~~v~~~-------v~s~~----~a~~a~~~g~D~ivv~G~ea 141 (332)
...++.+.++|+|++.+...... ...++.+++.|..+-.. .++++ -++.+.+.|+|.|.+.-.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDt-- 177 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDM-- 177 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCC--
Confidence 34677888899999877532221 23456677777755222 23443 466788899999988433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceeee
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~~ 194 (332)
.|.. .+.....++..+++.++. ++||-.-. |.+ ..+..+++.+||+.|-.
T Consensus 178 aGll-~P~~~~~LV~~Lk~~~~~-~ipI~~H~Hnt~GlA-~An~laAieAGad~vDt 231 (499)
T PRK12330 178 AALL-KPQPAYDIVKGIKEACGE-DTRINLHCHSTTGVT-LVSLMKAIEAGVDVVDT 231 (499)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCC-CCeEEEEeCCCCCcH-HHHHHHHHHcCCCEEEe
Confidence 3443 344557788888877631 47876654 663 46777888999997754
No 427
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.17 E-value=4.9 Score=34.80 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCcEEEEc-----c--C-CCcHHHHHHHHhC-CCEE-E-EecC-CHHHHHHHHHcCCCEEEEecCCCCccc
Q 020013 78 ENIKAILSEKVAVLQVS-----W--G-EYSEELVLEAHSA-GVKV-V-PQVG-SFDEARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-----~--g-~~~~~~i~~~~~~-g~~v-~-~~v~-s~~~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
+.++.+.+.|+|.|++. + + ....+.++.+++. ..++ + ..+. ..+.++.+.+.|+|+|++.+.
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~------ 88 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPE------ 88 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccC------
Confidence 45666677788888774 1 1 1233567777653 3443 2 3333 345667778999999999431
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccccc
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
........++.+++. ++.++..-...+.....+.+..++|.+.+++.+..
T Consensus 89 -~~~~~~~~~~~~~~~----g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 89 -ASEHIHRLLQLIKDL----GAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG 138 (210)
T ss_pred -CchhHHHHHHHHHHc----CCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 111223334443332 34444443444556655666678999998876543
No 428
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.13 E-value=0.7 Score=41.02 Aligned_cols=169 Identities=12% Similarity=0.102 Sum_probs=94.7
Q ss_pred CCcHHHHHHHHhC--CCceeecCCCCCCHHHH----HHHHHHHHhhc-CCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc
Q 020013 22 ISGPELVAAVANA--GGLGLLRAPDWEAPDYL----RDLIRKTRSLT-ERPFGVGVVLAFPHNENIKAILSEKVAVLQVS 94 (332)
Q Consensus 22 ~s~~~la~avs~a--GglG~i~~~~~~~~e~~----~~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~ 94 (332)
..+.+-+..+.+. +.+.++..+ + +-+ .+.++++++.. +.++-..+-+.+-.+...+.+.+.|+|.+.++
T Consensus 12 ~~~~~~A~~l~~~l~~~v~~iKVG-~---~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~ 87 (218)
T PRK13305 12 HTSLEAAQRDVTLLKDHVDIVEAG-T---ILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTII 87 (218)
T ss_pred CCCHHHHHHHHHHccccCCEEEEC-H---HHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEe
Confidence 4555555554432 344555443 1 111 13355665542 44555565554432334455668899877765
Q ss_pred cCCCcHHHHHHHHh----CCC----EEEEecCCHHHHHHHHHcCCCEEEEe-c---CCCCcccCCCCchhhhHHHHHHHh
Q 020013 95 WGEYSEELVLEAHS----AGV----KVVPQVGSFDEARKAVNAGVDAIIVQ-G---REAGGHVIGQDGLISLLPMVVDLI 162 (332)
Q Consensus 95 ~g~~~~~~i~~~~~----~g~----~v~~~v~s~~~a~~a~~~g~D~ivv~-G---~eaGGh~~~~~~~~~ll~~i~~~~ 162 (332)
... ..+.++.+.+ .|. .++. |.|..++....+.|++.++++ + .++|.- .+..-++.+++..
T Consensus 88 ~~~-g~~~i~~a~~~a~~~~~~~~~~llg-V~t~~~~~~l~~~g~~~~v~h~a~~a~~~G~v-----~s~~e~~~ir~~~ 160 (218)
T PRK13305 88 CAA-PLATVEKGHAVAQRCGGEIQIELFG-NWTLDDARDWHRIGVRQAIYHRGRDAQASGQQ-----WGEADLARMKALS 160 (218)
T ss_pred cCC-CHHHHHHHHHHHHhcCCcccceEEE-ecCcchHHHHHHcCCHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHh
Confidence 332 3455554433 232 3443 345556566667887755441 1 123321 1222345555554
Q ss_pred CCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCcc
Q 020013 163 GDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASEE 203 (332)
Q Consensus 163 ~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~E 203 (332)
.. +.++..+||| ++++....-..+.|-+++|+.+..++.
T Consensus 161 ~~-~~~i~VtpGI-r~~~~~~~dq~rvd~iVVGR~It~A~d 199 (218)
T PRK13305 161 DI-GLELSITGGI-TPADLPLFKDIRVKAFIAGRALAGAAN 199 (218)
T ss_pred CC-CCcEEEeCCc-CccccccccccCCCEEEECCcccCCCC
Confidence 32 5679999999 778877777789999999999987765
No 429
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.08 E-value=3.9 Score=37.85 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=86.9
Q ss_pred HHHHHHHHhCCCceeecCCCCCCHH------HHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCC
Q 020013 25 PELVAAVANAGGLGLLRAPDWEAPD------YLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEY 98 (332)
Q Consensus 25 ~~la~avs~aGglG~i~~~~~~~~e------~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~ 98 (332)
.+++....++| +-.|..+++.+|. ...+.++.++...+..+. .+. +...-++.+.+.+++.|.+.....
T Consensus 29 ~~ia~~L~~~G-v~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~--~l~--~~~~~ie~A~~~g~~~v~i~~~~s 103 (287)
T PRK05692 29 IALIDRLSAAG-LSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYA--ALT--PNLKGLEAALAAGADEVAVFASAS 103 (287)
T ss_pred HHHHHHHHHcC-CCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEE--EEe--cCHHHHHHHHHcCCCEEEEEEecC
Confidence 45677777776 4444432222221 113444555432222222 122 235668889999999887653221
Q ss_pred -----------cH-------HHHHHHHhCCCEEEEec-----------CCHH----HHHHHHHcCCCEEEEecCCCCccc
Q 020013 99 -----------SE-------ELVLEAHSAGVKVVPQV-----------GSFD----EARKAVNAGVDAIIVQGREAGGHV 145 (332)
Q Consensus 99 -----------~~-------~~i~~~~~~g~~v~~~v-----------~s~~----~a~~a~~~g~D~ivv~G~eaGGh~ 145 (332)
.+ +.++..++.|..+...+ .+++ -++.+.+.|+|.|.+--+ .|..
T Consensus 104 ~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT--~G~~ 181 (287)
T PRK05692 104 EAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDT--IGVG 181 (287)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccc--cCcc
Confidence 11 24455667788774211 1333 345677899999887332 3432
Q ss_pred CCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 146 IGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 146 ~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
.+.....+++.+++.++ ++|+-.-+ |.+ -.|..+++.+|++-|-
T Consensus 182 -~P~~v~~lv~~l~~~~~--~~~i~~H~Hn~~Gla-~AN~laA~~aG~~~id 229 (287)
T PRK05692 182 -TPGQVRAVLEAVLAEFP--AERLAGHFHDTYGQA-LANIYASLEEGITVFD 229 (287)
T ss_pred -CHHHHHHHHHHHHHhCC--CCeEEEEecCCCCcH-HHHHHHHHHhCCCEEE
Confidence 33445677888877663 36765443 442 3566777888988543
No 430
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.06 E-value=1.4 Score=41.48 Aligned_cols=91 Identities=18% Similarity=0.369 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhhc-CCcEEEEeecCCCC-----HHHHHHHHhcCCcEEEEcc--------CCCcHHHHHHHHhC-C
Q 020013 46 EAPDYLRDLIRKTRSLT-ERPFGVGVVLAFPH-----NENIKAILSEKVAVLQVSW--------GEYSEELVLEAHSA-G 110 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~-~~p~gvnl~~~~~~-----~~~~~~~~~~~~~~I~~~~--------g~~~~~~i~~~~~~-g 110 (332)
.+|+.+.+.++++++.. +.|+-|.+=+...+ .+..+.+.+.|++.+++|. +...-+.+..+++. .
T Consensus 118 ~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~ 197 (323)
T COG0042 118 KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVP 197 (323)
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCC
Confidence 57899999999999988 48988876443322 2456777788999999983 11123567777763 3
Q ss_pred -CEEEE--ecCCHHHHHHHHH-cCCCEEEE
Q 020013 111 -VKVVP--QVGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 111 -~~v~~--~v~s~~~a~~a~~-~g~D~ivv 136 (332)
++|+. .|.|.++++..++ .|+|+|.+
T Consensus 198 ~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 198 SIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred CCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 77875 4779999998876 57999998
No 431
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.04 E-value=2.3 Score=40.22 Aligned_cols=102 Identities=18% Similarity=0.355 Sum_probs=71.8
Q ss_pred HhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCC---HHHHHHHHhcCCcEEEEcc------C--CCcH
Q 020013 32 ANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPH---NENIKAILSEKVAVLQVSW------G--EYSE 100 (332)
Q Consensus 32 s~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~------g--~~~~ 100 (332)
+..|++|..- ...++-+.+++.+++..++.|+-+.+=+.... .++.+.+.++|++.+.+|. | .+|.
T Consensus 113 a~~g~yGa~L---~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pa 189 (358)
T KOG2335|consen 113 AKRGGYGAFL---MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPA 189 (358)
T ss_pred HhcCCcccee---ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCc
Confidence 3445555532 35789999999999998888877776554433 3456677889999999983 1 1222
Q ss_pred --HHHHHHHhC-C-CEEEE--ecCCHHHHHHHHH-cCCCEEEE
Q 020013 101 --ELVLEAHSA-G-VKVVP--QVGSFDEARKAVN-AGVDAIIV 136 (332)
Q Consensus 101 --~~i~~~~~~-g-~~v~~--~v~s~~~a~~a~~-~g~D~ivv 136 (332)
+.++.+++. . ++++. .+.+++++..+.+ .|+|+|.+
T Consensus 190 d~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 190 DWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred CHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 445666653 3 77775 5789999998887 89999986
No 432
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.00 E-value=0.92 Score=41.86 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=65.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHH----HHHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGY----VAALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v----~~al~~GA~gV~~GT~ 197 (332)
......+.|+|+|++-|..+-++......-..++..+++...+ ++||++.=|=.+.++. ..+-.+|||+|++...
T Consensus 24 ~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 24 LIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455678899999996664444331212235556666666643 6898865443234443 2334589999999988
Q ss_pred cccCcc-CCCCHHHHHHHhcCCCceEEEEecccCCCCCCceeecChHHHhhh
Q 020013 198 FVASEE-SYAHPEYKRKLVEMDKTEYTDVFGRARWPGAPHRVLQTPFFSNWK 248 (332)
Q Consensus 198 fl~t~E-s~~~~~~k~~~~~~~~t~~t~~~~~~~~~g~~~R~l~n~~~~~~~ 248 (332)
+..... ...-+ |=+.|.++.+..+ .+++. |...+..+...+.+++.
T Consensus 103 ~y~~~~~~~i~~-~~~~i~~~~~~pi-~lYn~---P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 103 YYNKPTQEGLYQ-HFKAIAEEVDLPI-ILYNV---PSRTGVSLYPETVKRLA 149 (285)
T ss_pred cCCCCCHHHHHH-HHHHHHhcCCCCE-EEEEC---cHHhcCCCCHHHHHHHH
Confidence 776531 11222 2233333334332 34432 33334455555555544
No 433
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=92.99 E-value=0.73 Score=41.53 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
++.+.+++.|+..+.++-+.+.+..+.+.+++++.+-- +....+.||..+.+. +.|||.+-|.++-++
T Consensus 60 ~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS--------~dl~n~~lL~~~A~t----gkPvIlSTG~stl~E 127 (241)
T PF03102_consen 60 ELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIAS--------GDLTNLPLLEYIAKT----GKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-G--------GGTT-HHHHHHHHTT-----S-EEEE-TT--HHH
T ss_pred HHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEecc--------ccccCHHHHHHHHHh----CCcEEEECCCCCHHH
Confidence 44566778899999999999999999999999999832 223446777777662 799999999999999
Q ss_pred HHHHHH
Q 020013 181 YVAALS 186 (332)
Q Consensus 181 v~~al~ 186 (332)
+..++.
T Consensus 128 I~~Av~ 133 (241)
T PF03102_consen 128 IERAVE 133 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988876
No 434
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=92.99 E-value=2.2 Score=40.94 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=34.9
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGT 196 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT 196 (332)
.+|.-+..+++.- ++|||+ .||.+++++..+..+|+|+|++..
T Consensus 211 ~tW~di~wlr~~~---~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 211 LSWKDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CCHHHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 4577778887765 799887 555699999999999999999853
No 435
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.96 E-value=1.6 Score=39.23 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=74.8
Q ss_pred CCCCCCCcHHHHHHHHhC----CCceee-----cCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcC
Q 020013 17 PLGPDISGPELVAAVANA----GGLGLL-----RAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEK 87 (332)
Q Consensus 17 pM~~g~s~~~la~avs~a----GglG~i-----~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~ 87 (332)
|=.-|..+.+-|..+++. ++-.+| +...+.-|| ..+.++..+.+.+.-|-+=- +-.++....+.+.+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd-~~~tv~aa~~L~~~Gf~vlp-yc~dd~~~ar~l~~~G 144 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPD-PIETLKAAEILVKEGFTVLP-YCTDDPVLAKRLEDAG 144 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccC-HHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHcC
Confidence 444466677666666543 443444 333333343 46677777776543343321 2233456677788889
Q ss_pred CcEEEEc-------cCCCcHHHHHHHHh-CCCEEEEe--cCCHHHHHHHHHcCCCEEEE
Q 020013 88 VAVLQVS-------WGEYSEELVLEAHS-AGVKVVPQ--VGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 88 ~~~I~~~-------~g~~~~~~i~~~~~-~g~~v~~~--v~s~~~a~~a~~~g~D~ivv 136 (332)
+++|-.. .|...+++++.+++ .+++|+.. +++++++..+.+.|+|+|++
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred CCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9998331 12224577888777 47888854 77999999999999999998
No 436
>PLN02979 glycolate oxidase
Probab=92.92 E-value=2.7 Score=40.17 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=35.5
Q ss_pred chhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 150 GLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 150 ~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+|.-++.+++.- ++|||+ .||.+++++..+..+|+|+|+++..
T Consensus 210 ltW~dl~wlr~~~---~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 210 LSWKDVQWLQTIT---KLPILV-KGVLTGEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred CCHHHHHHHHhcc---CCCEEe-ecCCCHHHHHHHHhcCCCEEEECCC
Confidence 4577788887765 799887 5556999999999999999998543
No 437
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=92.91 E-value=2.8 Score=37.16 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=70.6
Q ss_pred EEEeecCCCC----HHHHHHHHhcCCcEEEEcc----CCCcHHHHHHHHh--CCCEE-EE----ecCCHHHHH-HHHHcC
Q 020013 67 GVGVVLAFPH----NENIKAILSEKVAVLQVSW----GEYSEELVLEAHS--AGVKV-VP----QVGSFDEAR-KAVNAG 130 (332)
Q Consensus 67 gvnl~~~~~~----~~~~~~~~~~~~~~I~~~~----g~~~~~~i~~~~~--~g~~v-~~----~v~s~~~a~-~a~~~g 130 (332)
+-|++++... .+.++.+.+.|++.|.++. |.-..+..+.+.+ .|..+ ++ .+.++.++. .+.+.|
T Consensus 62 gGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~G 141 (241)
T COG3142 62 GGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELG 141 (241)
T ss_pred CCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCC
Confidence 4455554332 3446778889999988752 3333455555543 24443 22 244565554 567899
Q ss_pred CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHH-HcCc
Q 020013 131 VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAAL-SLGA 189 (332)
Q Consensus 131 ~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al-~~GA 189 (332)
+.-|+..| |.. .....+.++.++.+..++ .+-|++.||| +++|+.... ..|+
T Consensus 142 v~RILTsG----g~~-sa~eg~~~l~~li~~a~g-ri~Im~GaGV-~~~N~~~l~~~tg~ 194 (241)
T COG3142 142 VERILTSG----GKA-SALEGLDLLKRLIEQAKG-RIIIMAGAGV-RAENIAELVLLTGV 194 (241)
T ss_pred CcEEecCC----CcC-chhhhHHHHHHHHHHhcC-CEEEEeCCCC-CHHHHHHHHHhcCc
Confidence 99998743 332 222335666666666543 6778899999 899999874 4553
No 438
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=92.87 E-value=0.34 Score=41.90 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=45.9
Q ss_pred CCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 130 GVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 130 g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
-.+.|++.=..-|... | +..+++..+.+.. .-||+..|||.-.+++.-+..+|.+||.+||++-
T Consensus 151 ~~~lIvLDi~aVGt~~-G--~~~E~l~~~~~~s---~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh 214 (229)
T COG1411 151 DPGLIVLDIGAVGTKS-G--PDYELLTKVLELS---EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALH 214 (229)
T ss_pred CCCeEEEEcccccccc-C--CCHHHHHHHHHhc---cCceeecCCcCcHHHHHHHhcCCCceeeehhhhh
Confidence 4666666321112221 2 3466777776654 5799999999999999998899999999999853
No 439
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.82 E-value=0.72 Score=42.30 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=65.8
Q ss_pred HHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecC---CCCcccCCCCch----hhhHHHHHHHhCCCCCcEEee
Q 020013 101 ELVLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGR---EAGGHVIGQDGL----ISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 101 ~~i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~---eaGGh~~~~~~~----~~ll~~i~~~~~~~~iPviaa 172 (332)
...+.+++ .++.+++.+.++-.|+.+++.|..++.+.|. .+-|+.++...+ +..+++|.+.+ ++||++.
T Consensus 8 ~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~---~lPv~vD 84 (289)
T COG2513 8 AAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV---DLPVLVD 84 (289)
T ss_pred HHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc---CCceEEe
Confidence 34455554 4688889999999999999999999999775 233444333222 33455566655 8999965
Q ss_pred --cCcCCHHH----HHHHHHcCcceeeeccccc
Q 020013 173 --GGIVDARG----YVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 173 --GGI~~~~~----v~~al~~GA~gV~~GT~fl 199 (332)
.|-+++.+ +.++..+|+.|+.+=-...
T Consensus 85 ~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~ 117 (289)
T COG2513 85 IDTGFGEALNVARTVRELEQAGAAGIHIEDQVG 117 (289)
T ss_pred ccCCCCcHHHHHHHHHHHHHcCcceeeeeeccc
Confidence 57766555 4566779999998854433
No 440
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.80 E-value=4.4 Score=36.93 Aligned_cols=121 Identities=21% Similarity=0.168 Sum_probs=79.4
Q ss_pred CccceecCCCCCCC-----CcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPDI-----SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~-----s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.|++ =|+..- .-..+...++++|.-|+|-. . .++|+.++.+..+++.. .--|-++.+....+.++.+
T Consensus 88 ~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-D-Lp~ee~~~~~~~~~~~g--l~~I~lvap~t~~eri~~i 161 (258)
T PRK13111 88 PTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIP-D-LPPEEAEELRAAAKKHG--LDLIFLVAPTTTDERLKKI 161 (258)
T ss_pred CCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEEC-C-CCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHH
Confidence 345866 454211 23468889999999999975 3 57888888888877642 1223333343346778877
Q ss_pred HhcCCcEEEE-c-cC---C------CcHHHHHHHHhC-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQV-S-WG---E------YSEELVLEAHSA-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~-~-~g---~------~~~~~i~~~~~~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+....+|.. + .| . ...+.++++++. +++++. .+.+.+++..+.+. +|++++
T Consensus 162 ~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviV 227 (258)
T PRK13111 162 ASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIV 227 (258)
T ss_pred HHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEE
Confidence 7777777643 1 11 1 123577888774 666664 46799999998875 999998
No 441
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.76 E-value=4.6 Score=41.34 Aligned_cols=112 Identities=15% Similarity=0.257 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCcEEEEccCCC-cH---HHHHHHHhCCCEEEEec-------CCH----HHHHHHHHcCCCEEEEecCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEY-SE---ELVLEAHSAGVKVVPQV-------GSF----DEARKAVNAGVDAIIVQGREA 141 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~-~~---~~i~~~~~~g~~v~~~v-------~s~----~~a~~a~~~g~D~ivv~G~ea 141 (332)
...++.+.++|++.|.+..... .. ..++.+++.|..+-..+ .++ +.++.+.+.|+|.|.+.-.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt-- 176 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDM-- 176 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCc--
Confidence 3457788899999987753221 22 34566677887765332 122 3466778899999988433
Q ss_pred CcccCCCCchhhhHHHHHHHhCCCCCcEEe----ecCcCCHHHHHHHHHcCcceeeec
Q 020013 142 GGHVIGQDGLISLLPMVVDLIGDRDIPIIA----AGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 142 GGh~~~~~~~~~ll~~i~~~~~~~~iPvia----aGGI~~~~~v~~al~~GA~gV~~G 195 (332)
-|.. .+.....++..+++.+ ++||-. ..|.+ ..+..+|+.+||+.|...
T Consensus 177 ~G~~-~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~Gla-~An~laAv~aGad~vD~a 229 (592)
T PRK09282 177 AGLL-TPYAAYELVKALKEEV---DLPVQLHSHCTSGLA-PMTYLKAVEAGVDIIDTA 229 (592)
T ss_pred CCCc-CHHHHHHHHHHHHHhC---CCeEEEEEcCCCCcH-HHHHHHHHHhCCCEEEee
Confidence 2332 2334567788887766 577765 56673 567778889999987653
No 442
>PRK12376 putative translaldolase; Provisional
Probab=92.68 E-value=7.3 Score=35.00 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=80.4
Q ss_pred HHHHHHHhhc-CCcEEEEeecCCCCHHHHHH---HHhcCCcEEE-EccCC----CcHHHHHHHHhCCCEEEEe-cCCHHH
Q 020013 53 DLIRKTRSLT-ERPFGVGVVLAFPHNENIKA---ILSEKVAVLQ-VSWGE----YSEELVLEAHSAGVKVVPQ-VGSFDE 122 (332)
Q Consensus 53 ~~i~~~r~~~-~~p~gvnl~~~~~~~~~~~~---~~~~~~~~I~-~~~g~----~~~~~i~~~~~~g~~v~~~-v~s~~~ 122 (332)
+.++++++.. +.|+.+-++.... ++.++. +.+.+..++. +..-. .--+.++.+.+.|+++-.+ |-|+.+
T Consensus 47 ~~~~~i~~~~~~~~vs~EV~~~d~-~~mv~eA~~l~~~~~nv~VKIP~T~~~G~~gl~Ai~~L~~~GI~vn~T~vfs~~Q 125 (236)
T PRK12376 47 AFAKEVLAEIPDAPISFEVFADDL-ETMEKEAEKIASLGENVYVKIPITNTKGESTIPLIKKLSADGVKLNVTAIFTIEQ 125 (236)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHHHHHhCCCeEEEECCcCccchhHHHHHHHHHHCCCeEEEeeecCHHH
Confidence 3445555554 4577777754332 334333 3334555543 34211 1135678888899998654 668888
Q ss_pred HHHHHHc----CCCEEEE-ecCC-CCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcCCHHHHHHHHHcCcceeeec
Q 020013 123 ARKAVNA----GVDAIIV-QGRE-AGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDARGYVAALSLGAQGICLG 195 (332)
Q Consensus 123 a~~a~~~----g~D~ivv-~G~e-aGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~~~~~v~~al~~GA~gV~~G 195 (332)
+..+.++ |+++|-. -|+- --|. ..+.++.++.+.+.. .++ =|.+.-|.+..++.+++.+|||.+-+.
T Consensus 126 a~~a~~A~ag~ga~yispfvgR~dd~g~-----D~~~~i~~i~~i~~~~~~t-kILaASiR~~~~v~~a~~~Gad~vTvp 199 (236)
T PRK12376 126 VKEVVDALTPGVPAIVSVFAGRIADTGV-----DPVPLMKEALAICHSKPGV-ELLWASPREVYNIIQADQLGCDIITVT 199 (236)
T ss_pred HHHHHHHhcCCCCeEEEEecchhhhcCC-----CcHHHHHHHHHHHHhCCCc-EEEEEecCCHHHHHHHHHcCCCEEEcC
Confidence 8754443 5888865 3431 1111 225556666555432 133 445567999999999999999998863
No 443
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=92.68 E-value=3.1 Score=36.13 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=61.2
Q ss_pred hcCCcEEEEcc---CCCcHHHHHHHHhC--CCEEEEec--CCHH--HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhH
Q 020013 85 SEKVAVLQVSW---GEYSEELVLEAHSA--GVKVVPQV--GSFD--EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLL 155 (332)
Q Consensus 85 ~~~~~~I~~~~---g~~~~~~i~~~~~~--g~~v~~~v--~s~~--~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll 155 (332)
+.++++|.+.. .....+.++.+++. +..++... .++. +++.+.++|+|+|++.+. ++. .....++
T Consensus 22 ~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~-~~~-----~~~~~~i 95 (206)
T TIGR03128 22 ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGV-ADD-----ATIKGAV 95 (206)
T ss_pred ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEecc-CCH-----HHHHHHH
Confidence 55677776631 11123567777664 44555443 2443 588889999999998643 111 1123344
Q ss_pred HHHHHHhCCCCCcEEee-cCcCCH-HHHHHHHHcCcceeeecccc
Q 020013 156 PMVVDLIGDRDIPIIAA-GGIVDA-RGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 156 ~~i~~~~~~~~iPviaa-GGI~~~-~~v~~al~~GA~gV~~GT~f 198 (332)
..+.+ . +++++++ -+..+. +.+..+..+|+|-|.+.+.|
T Consensus 96 ~~~~~-~---g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 96 KAAKK-H---GKEVQVDLINVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HHHHH-c---CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 44433 2 6888775 344443 67777888899988775433
No 444
>PLN02411 12-oxophytodienoate reductase
Probab=92.66 E-value=0.18 Score=48.79 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=39.6
Q ss_pred hHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcC-cceeeeccccccCcc
Q 020013 154 LLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLG-AQGICLGTRFVASEE 203 (332)
Q Consensus 154 ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~G-A~gV~~GT~fl~t~E 203 (332)
+..++++.+ ++||+++||| +++.+.++++.| ||.|.+|..|++.++
T Consensus 304 ~a~~ik~~v---~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPd 350 (391)
T PLN02411 304 LMRTLRRAY---QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPD 350 (391)
T ss_pred HHHHHHHHc---CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 446677776 7899999999 789999999988 899999999998765
No 445
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=92.63 E-value=1.4 Score=35.13 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=46.9
Q ss_pred HHHhCCCEEEEe--cCCHHH-HHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCH
Q 020013 105 EAHSAGVKVVPQ--VGSFDE-ARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDA 178 (332)
Q Consensus 105 ~~~~~g~~v~~~--v~s~~~-a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~ 178 (332)
.++..|..++.. -.+.++ ...+.+.++|+|++.... ......++++.+.++. .++++++.|.+ ..
T Consensus 22 ~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~--------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~-~~ 92 (122)
T cd02071 22 ALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLS--------GGHMTLFPEVIELLRELGAGDILVVGGGII-PP 92 (122)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccc--------hhhHHHHHHHHHHHHhcCCCCCEEEEECCC-CH
Confidence 356667776632 223344 455678899999985432 1122333444333321 14566665555 56
Q ss_pred HHHHHHHHcCcceee
Q 020013 179 RGYVAALSLGAQGIC 193 (332)
Q Consensus 179 ~~v~~al~~GA~gV~ 193 (332)
++..++.++|.|++.
T Consensus 93 ~~~~~~~~~G~d~~~ 107 (122)
T cd02071 93 EDYELLKEMGVAEIF 107 (122)
T ss_pred HHHHHHHHCCCCEEE
Confidence 778889999998775
No 446
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.56 E-value=2.8 Score=39.97 Aligned_cols=89 Identities=22% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEcc-CC-------------------------CcHH
Q 020013 48 PDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSW-GE-------------------------YSEE 101 (332)
Q Consensus 48 ~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~-g~-------------------------~~~~ 101 (332)
.+.+.+.++.+++..+.|+.+.........+.++.+.+.|+|+|.++. |. +...
T Consensus 171 f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 171 FRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 333457778888777889998766432235667778889999998852 11 0011
Q ss_pred HHHHHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 102 LVLEAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 102 ~i~~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..+++. +++|+. .+.+..++.+++..|+|++-+
T Consensus 251 ~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 22223332 567764 367888888888899998876
No 447
>PRK15492 triosephosphate isomerase; Provisional
Probab=92.55 E-value=1.1 Score=40.91 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcHH----HHHHHHhCCCEEEEecCCHHHHHHH--------------H-HcCC
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSEE----LVLEAHSAGVKVVPQVGSFDEARKA--------------V-NAGV 131 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~~----~i~~~~~~g~~v~~~v~s~~~a~~a--------------~-~~g~ 131 (332)
-....+.+.|++.+.++ |++ ..+ -++.+.+.|+..+..++...+.+.+ + ...+
T Consensus 85 vSa~mLkd~G~~~viiGHSERR~~f~E-td~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~ 163 (260)
T PRK15492 85 ISPLMLKEIGTQLVMIGHSERRHKFGE-TDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINP 163 (260)
T ss_pred CCHHHHHHcCCCEEEECccccccccCc-chHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCH
Confidence 34667888999999875 343 233 2345567899888888754332221 1 1122
Q ss_pred ----CEEEE-ecCCC---CcccCCCC---chhhhHHHH-HHHhC--CCCCcEEeecCcCCHHHHHHHHHc-Ccceeeecc
Q 020013 132 ----DAIIV-QGREA---GGHVIGQD---GLISLLPMV-VDLIG--DRDIPIIAAGGIVDARGYVAALSL-GAQGICLGT 196 (332)
Q Consensus 132 ----D~ivv-~G~ea---GGh~~~~~---~~~~ll~~i-~~~~~--~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT 196 (332)
+.|++ +...+ ||....+. .....+++. .+.+. ..+++|+-.|+| +++|+.+.+.. ..||+.+|.
T Consensus 164 ~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV-~~~N~~~l~~~~diDG~LvG~ 242 (260)
T PRK15492 164 DQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSV-NAENANELFGQPHIDGLFIGR 242 (260)
T ss_pred hhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCcc-CHHHHHHHhcCCCCCEEEeeh
Confidence 23443 33333 23321110 123334432 22221 126899999999 89999999875 589999998
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+-+
T Consensus 243 aSl 245 (260)
T PRK15492 243 SAW 245 (260)
T ss_pred hhc
Confidence 844
No 448
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=92.46 E-value=3.1 Score=31.52 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=62.0
Q ss_pred HHHHhCCCEEEEecCCHHHHHHHH-HcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH
Q 020013 104 LEAHSAGVKVVPQVGSFDEARKAV-NAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV 182 (332)
Q Consensus 104 ~~~~~~g~~v~~~v~s~~~a~~a~-~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~ 182 (332)
+.++..|...+..+.+.+++.... ...+|.+++.-.-.+ .....++.+++.... ++|+|+-+.=.+.....
T Consensus 16 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~------~~~~~~~~~i~~~~~--~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 16 KLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD------GDGLELLEQIRQINP--SIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS------SBHHHHHHHHHHHTT--TSEEEEEESSTSHHHHH
T ss_pred HHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc------ccccccccccccccc--cccEEEecCCCCHHHHH
Confidence 445567886666788888877654 567999999643222 244677788776552 79999999888999999
Q ss_pred HHHHcCcceeee
Q 020013 183 AALSLGAQGICL 194 (332)
Q Consensus 183 ~al~~GA~gV~~ 194 (332)
+++.+|++++..
T Consensus 88 ~~~~~g~~~~l~ 99 (112)
T PF00072_consen 88 EALRAGADDYLS 99 (112)
T ss_dssp HHHHTTESEEEE
T ss_pred HHHHCCCCEEEE
Confidence 999999998875
No 449
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=92.45 E-value=8.1 Score=34.98 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=102.0
Q ss_pred chhhcCCccceecCCCCCCCCcHHHHHHHHhCCCceeecC--C-CCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHH
Q 020013 3 WRGMLGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRA--P-DWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNEN 79 (332)
Q Consensus 3 ~~~~l~~~~Pii~apM~~g~s~~~la~avs~aGglG~i~~--~-~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~ 79 (332)
|.+.|.-.-|++..-+ ...+|..+..++.+| +.++.. . +..+.+.+...+..++.. ..+--|-+ +.++...
T Consensus 3 lk~~l~~g~~~~G~~~--~~~sp~~~e~~a~~G-~D~v~iD~EHg~~~~~~~~~~~~a~~~~-g~~~~VRv--p~~~~~~ 76 (249)
T TIGR03239 3 FRQDLLARETLIGCWS--ALGNPITTEVLGLAG-FDWLLLDGEHAPNDVLTFIPQLMALKGS-ASAPVVRP--PWNEPVI 76 (249)
T ss_pred HHHHHHcCCceEEEEE--cCCCcHHHHHHHhcC-CCEEEEecccCCCCHHHHHHHHHHHhhc-CCCcEEEC--CCCCHHH
Confidence 3444444556663322 367888888888777 555532 1 124667777777776542 22222322 2334566
Q ss_pred HHHHHhcCCcEEEEccCCCcH---------------------------------HHHHHHHhCCCEEEEecCCHHHHHHH
Q 020013 80 IKAILSEKVAVLQVSWGEYSE---------------------------------ELVLEAHSAGVKVVPQVGSFDEARKA 126 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~g~~~~---------------------------------~~i~~~~~~g~~v~~~v~s~~~a~~a 126 (332)
+..+++.|++.|.+..= ... ++.+... ..+.+++.+-|++-...+
T Consensus 77 i~r~LD~Ga~gIivP~v-~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n-~~~~vi~~IEt~~av~n~ 154 (249)
T TIGR03239 77 IKRLLDIGFYNFLIPFV-ESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATIN-DNITVLVQIESQKGVDNV 154 (249)
T ss_pred HHHHhcCCCCEEEecCc-CCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhc-cccEEEEEECCHHHHHhH
Confidence 77788888888766421 111 1222221 245678888776654443
Q ss_pred HH----cCCCEEEEecCC---CCcccCC--CCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccc
Q 020013 127 VN----AGVDAIIVQGRE---AGGHVIG--QDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 127 ~~----~g~D~ivv~G~e---aGGh~~~--~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~ 197 (332)
.+ .|+|++.+-..+ .=|+.+. .......+.++.+..+..++|+-. -..+++++..++..|++.+.+|+-
T Consensus 155 ~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~--~~~~~~~~~~~~~~G~~~~~~~~D 232 (249)
T TIGR03239 155 DEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI--LAPVEADARRYLEWGATFVAVGSD 232 (249)
T ss_pred HHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE--cCCCHHHHHHHHHcCCCEEEEhHH
Confidence 32 579988872211 1122211 112334444444443323566532 124789999999999999999864
No 450
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=92.43 E-value=1 Score=42.12 Aligned_cols=91 Identities=20% Similarity=0.352 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCC--C---HHHHHHHHhcCCcEEEEcc--------CCCcHHHHHHHHh-CCC
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP--H---NENIKAILSEKVAVLQVSW--------GEYSEELVLEAHS-AGV 111 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~--~---~~~~~~~~~~~~~~I~~~~--------g~~~~~~i~~~~~-~g~ 111 (332)
.+|+.+.+.++.+++.++.|+.+.+=+... . .+.++.+.+.|++.|.+|. |...-+.++.+++ ..+
T Consensus 105 ~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~i 184 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPI 184 (309)
T ss_dssp C-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TS
T ss_pred cChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccc
Confidence 578999999999998888898887644332 2 3567778889999999993 1112245565554 368
Q ss_pred EEEE--ecCCHHHHHHHHHc-CCCEEEE
Q 020013 112 KVVP--QVGSFDEARKAVNA-GVDAIIV 136 (332)
Q Consensus 112 ~v~~--~v~s~~~a~~a~~~-g~D~ivv 136 (332)
+|+. .+.|.+++.+..+. |+|+|.+
T Consensus 185 pvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 185 PVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp EEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred eeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 8885 47899999988766 9999988
No 451
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=92.38 E-value=2.3 Score=40.23 Aligned_cols=90 Identities=20% Similarity=0.102 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-Cc-------------------------H
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YS-------------------------E 100 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~-------------------------~ 100 (332)
+.+.+.+.++.+++..+.|+.+.........+.++.+.+.|+|+|.++... .. .
T Consensus 163 ~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~ 242 (333)
T TIGR02151 163 NFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTA 242 (333)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHH
Confidence 344455778888877789999876543333567778889999999986311 00 0
Q ss_pred HHHHHHHh--CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 101 ELVLEAHS--AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 101 ~~i~~~~~--~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.+..+++ ..++|+. .+.+..++.+++..|||+|-+
T Consensus 243 ~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~i 282 (333)
T TIGR02151 243 ASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGM 282 (333)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehh
Confidence 11222232 3567764 467899999999999999876
No 452
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.35 E-value=2.1 Score=40.24 Aligned_cols=90 Identities=11% Similarity=0.236 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecC-CC----CHHHHHHHHhcCCcEEEEccCC--------CcHHHHHHHHh-CCCE
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLA-FP----HNENIKAILSEKVAVLQVSWGE--------YSEELVLEAHS-AGVK 112 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~-~~----~~~~~~~~~~~~~~~I~~~~g~--------~~~~~i~~~~~-~g~~ 112 (332)
.++.+.+.++.+++.++.|+.+.+-.. .+ ..+.++.+.+.|++.|.+|... ...++++.+++ .+++
T Consensus 115 ~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ip 194 (319)
T TIGR00737 115 DPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIP 194 (319)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCc
Confidence 567788889999888888988876321 11 1345566777899999887311 12245566665 3677
Q ss_pred EEE--ecCCHHHHHHHH-HcCCCEEEE
Q 020013 113 VVP--QVGSFDEARKAV-NAGVDAIIV 136 (332)
Q Consensus 113 v~~--~v~s~~~a~~a~-~~g~D~ivv 136 (332)
|+. .+.+.+++.+++ ..|+|+|.+
T Consensus 195 vi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 195 VIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred EEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 774 578999999998 578999988
No 453
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=92.19 E-value=5.7 Score=35.79 Aligned_cols=135 Identities=16% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCC-CcHHHHHHHHhCCCEEEEecC--CHHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGE-YSEELVLEAHSAGVKVVPQVG--SFDE 122 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~-~~~~~i~~~~~~g~~v~~~v~--s~~~ 122 (332)
.+.|+.+++.+..++. |+.++...-+.+.++.+.+.+++++-++-++ ....+++.+.+.|.+++...+ +.+|
T Consensus 53 l~~e~~~~L~~~~~~~-----gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~E 127 (241)
T PF03102_consen 53 LSEEQHKELFEYCKEL-----GIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEE 127 (241)
T ss_dssp S-HHHHHHHHHHHHHT-----T-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHH
T ss_pred CCHHHHHHHHHHHHHc-----CCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHH
Confidence 3556666666666542 3443433334778888888899999886433 334688888889999998765 6666
Q ss_pred HHHH---H-Hc-CCCEEEEecCCCCcccCCC--CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcce
Q 020013 123 ARKA---V-NA-GVDAIIVQGREAGGHVIGQ--DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQG 191 (332)
Q Consensus 123 a~~a---~-~~-g~D~ivv~G~eaGGh~~~~--~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~g 191 (332)
...+ . +. +.+.++.+... +.. .+ ..-+..++.+++.. ++||=.+.=-....-...|.++||.-
T Consensus 128 I~~Av~~~~~~~~~~l~llHC~s--~YP-~~~e~~NL~~i~~L~~~f---~~~vG~SDHt~g~~~~~~AvalGA~v 197 (241)
T PF03102_consen 128 IERAVEVLREAGNEDLVLLHCVS--SYP-TPPEDVNLRVIPTLKERF---GVPVGYSDHTDGIEAPIAAVALGARV 197 (241)
T ss_dssp HHHHHHHHHHHCT--EEEEEE-S--SSS---GGG--TTHHHHHHHHS---TSEEEEEE-SSSSHHHHHHHHTT-SE
T ss_pred HHHHHHHHHhcCCCCEEEEecCC--CCC-CChHHcChHHHHHHHHhc---CCCEEeCCCCCCcHHHHHHHHcCCeE
Confidence 5544 3 33 56666665541 111 11 12366788888877 68885555443223344666788653
No 454
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.18 E-value=1.1 Score=42.42 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhcC-----CcEEEEeecCCCC---HHHHHHHHhcCCcEEEEccCC-----------------C--
Q 020013 46 EAPDYLRDLIRKTRSLTE-----RPFGVGVVLAFPH---NENIKAILSEKVAVLQVSWGE-----------------Y-- 98 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~-----~p~gvnl~~~~~~---~~~~~~~~~~~~~~I~~~~g~-----------------~-- 98 (332)
.+++.+.+.++.+++.++ .|+.+.+-..... .+..+.+.+.|+|.|.++... .
T Consensus 180 ~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG 259 (327)
T cd04738 180 QGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC
Confidence 356888899999988764 8999888643321 234556677899999865210 0
Q ss_pred -c-----HHHHHHHHhC---CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 99 -S-----EELVLEAHSA---GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 99 -~-----~~~i~~~~~~---g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
+ .+.+..+++. .++|+ ..+.+.+++.+...+|+|.|-+
T Consensus 260 ~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~v 308 (327)
T cd04738 260 APLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQL 308 (327)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhc
Confidence 0 2445555553 46666 3578999999999999999976
No 455
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.17 E-value=1.5 Score=40.57 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=61.6
Q ss_pred HHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC---cccC-CCCch---hhhHHHHHHHhCCCCCcEEee--
Q 020013 103 VLEAHS-AGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG---GHVI-GQDGL---ISLLPMVVDLIGDRDIPIIAA-- 172 (332)
Q Consensus 103 i~~~~~-~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG---Gh~~-~~~~~---~~ll~~i~~~~~~~~iPviaa-- 172 (332)
.+++++ .+..+.+.+.+.-.|+.++++|.+++.+.|.... |..+ +..+. +..+..|.+.+ ++||++.
T Consensus 5 lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~---~iPviaD~d 81 (285)
T TIGR02317 5 FRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT---DLPLLVDAD 81 (285)
T ss_pred HHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc---CCCEEEECC
Confidence 444444 4577778899999999999999999999775322 1111 11122 33344444444 7999975
Q ss_pred cCcCCHHH----HHHHHHcCcceeeeccc
Q 020013 173 GGIVDARG----YVAALSLGAQGICLGTR 197 (332)
Q Consensus 173 GGI~~~~~----v~~al~~GA~gV~~GT~ 197 (332)
.|-+++.+ +.++..+|+.|+.+=-.
T Consensus 82 ~GyG~~~~v~~tv~~~~~aG~agi~IEDq 110 (285)
T TIGR02317 82 TGFGEAFNVARTVREMEDAGAAAVHIEDQ 110 (285)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 57777777 45667799999999543
No 456
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.16 E-value=1.1 Score=41.51 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=62.2
Q ss_pred HHHHHHhC-CCEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccC-CCCc---hhhhHHHHHHHhCCCCCcEEee
Q 020013 102 LVLEAHSA-GVKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVI-GQDG---LISLLPMVVDLIGDRDIPIIAA 172 (332)
Q Consensus 102 ~i~~~~~~-g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~-~~~~---~~~ll~~i~~~~~~~~iPviaa 172 (332)
..+.+++. +..+.+.+.+.-.|+.+++.|.+++-+.|..-. |..+ +..+ ....+..|.+.+ ++||++.
T Consensus 8 ~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~---~iPviaD 84 (292)
T PRK11320 8 RFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC---DLPLLVD 84 (292)
T ss_pred HHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc---CCCEEEE
Confidence 34444444 567778899999999999999999998775321 2222 1112 233444555555 7999975
Q ss_pred --cCcCCHHHH----HHHHHcCcceeeecc
Q 020013 173 --GGIVDARGY----VAALSLGAQGICLGT 196 (332)
Q Consensus 173 --GGI~~~~~v----~~al~~GA~gV~~GT 196 (332)
.|-+++.++ .++..+|+.|+.+=-
T Consensus 85 ~d~GyG~~~~v~r~V~~~~~aGaagi~IED 114 (292)
T PRK11320 85 IDTGFGGAFNIARTVKSMIKAGAAAVHIED 114 (292)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 566688885 566679999999943
No 457
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.06 E-value=1.6 Score=35.60 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=46.8
Q ss_pred HHHHhCCCEEEE---ecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcC-
Q 020013 104 LEAHSAGVKVVP---QVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIV- 176 (332)
Q Consensus 104 ~~~~~~g~~v~~---~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~- 176 (332)
..+++.|..|+- .++..+-++.+.+.++|+|.+...- || ++..++++.+.+++ .+++|+..|++.
T Consensus 23 ~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~--~~------~~~~~~~~~~~l~~~gl~~~~vivGG~~vi 94 (134)
T TIGR01501 23 HAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLY--GH------GEIDCKGLRQKCDEAGLEGILLYVGGNLVV 94 (134)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cc------CHHHHHHHHHHHHHCCCCCCEEEecCCcCc
Confidence 345677877762 2333444566778899999885432 12 13344555444422 245555555422
Q ss_pred CHHHH----HHHHHcCcceeeec
Q 020013 177 DARGY----VAALSLGAQGICLG 195 (332)
Q Consensus 177 ~~~~v----~~al~~GA~gV~~G 195 (332)
..++. .++.++|.++|.-.
T Consensus 95 ~~~d~~~~~~~l~~~Gv~~vF~p 117 (134)
T TIGR01501 95 GKQDFPDVEKRFKEMGFDRVFAP 117 (134)
T ss_pred ChhhhHHHHHHHHHcCCCEEECc
Confidence 33443 34778898887643
No 458
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=92.00 E-value=4.5 Score=36.95 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=75.7
Q ss_pred CccceecCCCCCCC-----CcHHHHHHHHhCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHH
Q 020013 9 FEYGIVQAPLGPDI-----SGPELVAAVANAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAI 83 (332)
Q Consensus 9 ~~~Pii~apM~~g~-----s~~~la~avs~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~ 83 (332)
.+.|++ =|+..- .-..+....+++|.-|++.. . .++|+..+.++.+++.. . --+-++.+....+.++.+
T Consensus 90 ~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviip-D-LP~ee~~~~~~~~~~~g-i-~~I~lv~PtT~~eri~~i 163 (263)
T CHL00200 90 IKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIP-D-LPYEESDYLISVCNLYN-I-ELILLIAPTSSKSRIQKI 163 (263)
T ss_pred CCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEec-C-CCHHHHHHHHHHHHHcC-C-CEEEEECCCCCHHHHHHH
Confidence 345766 565311 22568888999999999865 2 57787777777777642 1 112233333335677666
Q ss_pred HhcCCcEEEE-c-c---CC---C---cHHHHHHHHhC-CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 84 LSEKVAVLQV-S-W---GE---Y---SEELVLEAHSA-GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 84 ~~~~~~~I~~-~-~---g~---~---~~~~i~~~~~~-g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+..-.+|.+ + . |. . ..++++++|+. +.++. ..+++.++++.+.+.|+|++|+
T Consensus 164 ~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVV 230 (263)
T CHL00200 164 ARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVI 230 (263)
T ss_pred HHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEE
Confidence 6654335543 1 1 21 1 23456666653 45544 4577899999999999999998
No 459
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=91.94 E-value=0.9 Score=42.19 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.+....+.|+|+|++-|..+.++......-..++..+++..++ ++||++.=|- +-++.. .+-.+|||++++-..
T Consensus 31 li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP 108 (296)
T TIGR03249 31 NIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG-KVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPP 108 (296)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC-CCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3455678999999997664444331222234556666666543 6898876553 334432 334589999999888
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 109 ~y~~ 112 (296)
T TIGR03249 109 YLIN 112 (296)
T ss_pred CCCC
Confidence 7754
No 460
>PLN02858 fructose-bisphosphate aldolase
Probab=91.91 E-value=11 Score=42.73 Aligned_cols=123 Identities=19% Similarity=0.250 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEE-------------------ecCCHHHHHHHHH-
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVP-------------------QVGSFDEARKAVN- 128 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~-------------------~v~s~~~a~~a~~- 128 (332)
.+.+..+++.|.+.|-+.....| .++++.++..|+.|=. ..+++++|++..+
T Consensus 1182 ~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~ 1261 (1378)
T PLN02858 1182 KHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDE 1261 (1378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHh
Confidence 45666677777777766522222 2345556666665421 1346788888764
Q ss_pred cCCCEEEE-ecCCCCcccC-CCCchhhhHHHHHHHhCCCCCcEEeecCcC-CHHHHHHHHHcCcceeeeccccc
Q 020013 129 AGVDAIIV-QGREAGGHVI-GQDGLISLLPMVVDLIGDRDIPIIAAGGIV-DARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 129 ~g~D~ivv-~G~eaGGh~~-~~~~~~~ll~~i~~~~~~~~iPviaaGGI~-~~~~v~~al~~GA~gV~~GT~fl 199 (332)
-|+|.+-+ .|.-=|-... .+.-.+.++.++.+.+...++|++.-||=+ ..+++.+++..|..-|=++|.+.
T Consensus 1262 TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1262 TGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVR 1335 (1378)
T ss_pred cCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHH
Confidence 59999876 3331111111 123458899999998743369999777533 35778999999999999998854
No 461
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=91.85 E-value=1.2 Score=40.84 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=56.3
Q ss_pred EEEecCCHHHHHHHHHcC-CCEEEEecCCCCcccCCCCchhhhHHHHHHHhCC---CCCcEEeecCcCCHHHHHHHHHcC
Q 020013 113 VVPQVGSFDEARKAVNAG-VDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGD---RDIPIIAAGGIVDARGYVAALSLG 188 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g-~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~---~~iPviaaGGI~~~~~v~~al~~G 188 (332)
+-..+.+.+++..+.+++ +|+|-++.... ........+.+..+.+.. .++-++++||| |.+++..+...|
T Consensus 187 idve~~~~~~~~~~~~~~~~d~irlDs~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sggi-~~~~i~~~~~~g 260 (281)
T cd00516 187 IDVEVDTLEEALEAAKAGGADGIRLDSGSP-----EELDPAVLILKARAHLDGKGLPRVKIEASGGL-DEENIRAYAETG 260 (281)
T ss_pred EEEEeCCHHHHHHHHhcCCCCEEEeCCCCh-----HHHHHHHHHHHHHHhhhhcCCCceEEEEeCCC-CHHHHHHHHHcC
Confidence 335567899999999999 99999864311 000111111122221110 15679999999 799999999999
Q ss_pred cceeeeccccccC
Q 020013 189 AQGICLGTRFVAS 201 (332)
Q Consensus 189 A~gV~~GT~fl~t 201 (332)
.|.+.+||.+...
T Consensus 261 vd~~gvG~~~~~~ 273 (281)
T cd00516 261 VDVFGVGTLLHSA 273 (281)
T ss_pred CCEEEeCcccccC
Confidence 9999999988765
No 462
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=91.83 E-value=2.1 Score=36.24 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=45.2
Q ss_pred HHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEE
Q 020013 82 AILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 82 ~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv 136 (332)
.....+++.+.+++.....+.++.+++.|++++. .+.+.++.+.+.+.|+|+|+.
T Consensus 132 ~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~wtvn~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 132 LARALGADAVNPHYKLLTPELVRAAHAAGLKVYVWTVNDPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHhcCCeEEccChhhCCHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHCCCCEEec
Confidence 4566788888887655567899999999999875 467899999999999999975
No 463
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=91.81 E-value=1.7 Score=38.39 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=45.1
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
..+.+.+.+++.+........+++++.+++.|++|+. ++.+.++...+.+.|+|+|+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 168 WLELLAALGAVSIHLNYRGLTEEQVKALKDAGYKLLVYTVNDPARAAELLEWGVDAIFTD 227 (229)
T ss_pred HHHHHHHcCCeEEecChhhCCHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 3344555667777665444467899999999999885 4778999999999999999864
No 464
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.72 E-value=1.9 Score=39.41 Aligned_cols=88 Identities=22% Similarity=0.163 Sum_probs=54.8
Q ss_pred HHHHHhCC-CEEEEecCCHHHHHHHHHcCCCEEEEecCCCC----cccCCC-Cch---hhhHHHHHHHhCCCCCc-EEee
Q 020013 103 VLEAHSAG-VKVVPQVGSFDEARKAVNAGVDAIIVQGREAG----GHVIGQ-DGL---ISLLPMVVDLIGDRDIP-IIAA 172 (332)
Q Consensus 103 i~~~~~~g-~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaG----Gh~~~~-~~~---~~ll~~i~~~~~~~~iP-viaa 172 (332)
++.+++.+ ..+++.+.+.-.|+.+.++|+|+|.+ |...+ |+.+.. .+. +..++.+++.. +.| |++.
T Consensus 7 lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~v-Gds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~---~~p~vvaD 82 (264)
T PRK00311 7 LQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILV-GDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA---PRALVVAD 82 (264)
T ss_pred HHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEE-CHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCcEEEe
Confidence 44555554 56678899999999999999999985 53222 443221 222 22334444433 454 7775
Q ss_pred cCcC----CHHH----HHHHHH-cCcceeee
Q 020013 173 GGIV----DARG----YVAALS-LGAQGICL 194 (332)
Q Consensus 173 GGI~----~~~~----v~~al~-~GA~gV~~ 194 (332)
-+.+ ++++ +.+.+. .||++|-+
T Consensus 83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 5433 3344 456666 99999998
No 465
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=91.58 E-value=2.2 Score=39.68 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=55.9
Q ss_pred HHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc--cC------CCcHHHHHHHHh-C--CCEEEE--ecCC
Q 020013 53 DLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--WG------EYSEELVLEAHS-A--GVKVVP--QVGS 119 (332)
Q Consensus 53 ~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--~g------~~~~~~i~~~~~-~--g~~v~~--~v~s 119 (332)
+.++++++.++.|+.+.... ..+....+.+.|+|+|.++ .| .+....+..+++ . .++|+. .+.+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~---s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~ 238 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGIL---TPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR 238 (299)
T ss_pred HHHHHHHHhcCCCEEEeecC---CHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence 45666666666787776432 2456778889999999884 22 122244444433 2 488875 4779
Q ss_pred HHHHHHHHHcCCCEEEE
Q 020013 120 FDEARKAVNAGVDAIIV 136 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv 136 (332)
..++.+++..|+|+|.+
T Consensus 239 ~~d~~kal~lGAd~V~i 255 (299)
T cd02809 239 GTDVLKALALGADAVLI 255 (299)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999988
No 466
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=91.55 E-value=9.5 Score=35.22 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=64.3
Q ss_pred HHhCC-CEEEEecC---CHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEe----e-----
Q 020013 106 AHSAG-VKVVPQVG---SFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIA----A----- 172 (332)
Q Consensus 106 ~~~~g-~~v~~~v~---s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPvia----a----- 172 (332)
.++.. ++|..... +.+..+.+.+.|++.|.+++.. . .....+.+..++++.....+++|-+ .
T Consensus 69 a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~----l-~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed 143 (282)
T TIGR01859 69 IERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSH----L-PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIED 143 (282)
T ss_pred HHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCC----C-CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccc
Confidence 34456 77765533 6788888899999999887652 1 1111233334444332211333321 1
Q ss_pred ------cCcCCHHHHHHHHH-cCcceee--ecccc-ccCccCCCCHHHHHHHhcCCC
Q 020013 173 ------GGIVDARGYVAALS-LGAQGIC--LGTRF-VASEESYAHPEYKRKLVEMDK 219 (332)
Q Consensus 173 ------GGI~~~~~v~~al~-~GA~gV~--~GT~f-l~t~Es~~~~~~k~~~~~~~~ 219 (332)
....+++++.++.. .|+|.+. +||.+ ..++.....-..-+.|.+.-+
T Consensus 144 ~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 144 GVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred cccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 22568999999996 8999888 78876 555555566555555555433
No 467
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=91.53 E-value=2.9 Score=40.56 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhhcC-CcEEEEeecCCCCHHHHHHHHhc-CCcEEEEccC----------------CCcH----HH
Q 020013 45 WEAPDYLRDLIRKTRSLTE-RPFGVGVVLAFPHNENIKAILSE-KVAVLQVSWG----------------EYSE----EL 102 (332)
Q Consensus 45 ~~~~e~~~~~i~~~r~~~~-~p~gvnl~~~~~~~~~~~~~~~~-~~~~I~~~~g----------------~~~~----~~ 102 (332)
+.+++.+.+.++++|+.++ +|+++.+..... .+.+..+++. ++|+|.+... .+.. ++
T Consensus 195 ~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~-~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v 273 (392)
T cd02808 195 IYSIEDLAQLIEDLREATGGKPIGVKLVAGHG-EGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARA 273 (392)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEECCCCC-HHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHH
Confidence 3577889999999999887 899998876532 3344444444 5999987521 1111 12
Q ss_pred HHHHHhC----CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHSA----GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~~----g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
.+.+++. .++|+. .+.+..++.+++..|||+|-+
T Consensus 274 ~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~i 313 (392)
T cd02808 274 HQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGI 313 (392)
T ss_pred HHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeee
Confidence 2223322 466664 467889999999999999976
No 468
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.50 E-value=3.2 Score=39.03 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeecCCC--C-----HHHHHHHHhcCCcEEEEccCCC--------------c--HHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVLAFP--H-----NENIKAILSEKVAVLQVSWGEY--------------S--EEL 102 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~--~-----~~~~~~~~~~~~~~I~~~~g~~--------------~--~~~ 102 (332)
..|+.+.++++.+++..+.|+.|.+-.... . .+.++.+.+.|++.|.+|.... + -+.
T Consensus 106 ~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~ 185 (318)
T TIGR00742 106 GNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYER 185 (318)
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHH
Confidence 468889999999998888899888754221 1 1345667789999999984320 1 134
Q ss_pred HHHHHh-C-CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHS-A-GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~-~-g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.++++ . .++|+. .+.|.+++.+... |+|+|.+
T Consensus 186 i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMi 222 (318)
T TIGR00742 186 VYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMV 222 (318)
T ss_pred HHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 556655 3 688874 5779999988875 8999987
No 469
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=91.44 E-value=6.5 Score=34.66 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCcEEEEccCC------CcHH----HHHHHHhCCCE---EEEecCCHHHHHHHHHcCCCEEEE
Q 020013 77 NENIKAILSEKVAVLQVSWGE------YSEE----LVLEAHSAGVK---VVPQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~------~~~~----~i~~~~~~g~~---v~~~v~s~~~a~~a~~~g~D~ivv 136 (332)
.++...+.++|+++|....|- ++.+ +.+.++..+.+ +++.+.++.++..+...|+|++.+
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv 184 (211)
T cd00956 112 AAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITL 184 (211)
T ss_pred HHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEe
Confidence 566777888999998876442 2333 34445566765 667888999999999999999987
No 470
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=91.42 E-value=1.9 Score=38.88 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=43.8
Q ss_pred HHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEecC
Q 020013 83 ILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQGR 139 (332)
Q Consensus 83 ~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~G~ 139 (332)
+.+.++..+........+++++.+++.|++|+. +|.+.++++.+.+.|+|+|+..-+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 182 TRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTVNDPARARELLRWGVDCICTDRI 239 (249)
T ss_pred HHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCCh
Confidence 344555556554444467899999999999874 578899999999999999987544
No 471
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.41 E-value=2 Score=36.63 Aligned_cols=113 Identities=25% Similarity=0.265 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCcEEEEccCCCcHHHHHHHHh--C--CCEEEEecC----------CHHHHHHHHHcCCCEEEEecCCCCc
Q 020013 78 ENIKAILSEKVAVLQVSWGEYSEELVLEAHS--A--GVKVVPQVG----------SFDEARKAVNAGVDAIIVQGREAGG 143 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~--~--g~~v~~~v~----------s~~~a~~a~~~g~D~ivv~G~eaGG 143 (332)
..++.+.+.|++.|.+. | ++++.+++ . .++++..++ +.++++.+.+.|+|++.+..+- +
T Consensus 17 ~~~~~~~~~gv~gi~~~-g----~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~--~ 89 (201)
T cd00945 17 KLCDEAIEYGFAAVCVN-P----GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI--G 89 (201)
T ss_pred HHHHHHHHhCCcEEEEC-H----HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH--H
Confidence 44566677788888776 3 34444332 2 367665553 2356778899999999985432 1
Q ss_pred ccCC--CCchhhhHHHHHHHhCCCCCcEEe--e-cCcCCHHHHHHH----HHcCcceeeecccc
Q 020013 144 HVIG--QDGLISLLPMVVDLIGDRDIPIIA--A-GGIVDARGYVAA----LSLGAQGICLGTRF 198 (332)
Q Consensus 144 h~~~--~~~~~~ll~~i~~~~~~~~iPvia--a-GGI~~~~~v~~a----l~~GA~gV~~GT~f 198 (332)
+... .......+.++.+.. ..++|++. . +.-.+.+.+.++ ...|+++|-..+..
T Consensus 90 ~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~ 152 (201)
T cd00945 90 SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGF 152 (201)
T ss_pred HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 1101 223456666777764 12678663 2 222256666654 34799998766643
No 472
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=91.29 E-value=7.3 Score=35.80 Aligned_cols=113 Identities=21% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCHHHHHHHHhcCCcEEEEccCCCc------------------HHHHHHHHhCCCEEEEec-----------CCHH----
Q 020013 75 PHNENIKAILSEKVAVLQVSWGEYS------------------EELVLEAHSAGVKVVPQV-----------GSFD---- 121 (332)
Q Consensus 75 ~~~~~~~~~~~~~~~~I~~~~g~~~------------------~~~i~~~~~~g~~v~~~v-----------~s~~---- 121 (332)
+..+-++.+++.+++.|.+...... .+.++..++.|..+...+ .+++
T Consensus 74 ~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~ 153 (274)
T cd07938 74 PNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAE 153 (274)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHH
Confidence 3456688999999998876532211 123556677888774211 1333
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
-++.+.+.|+|.|.+--+ .|.. .+.....++..+++.++ ++|+-.-+ |.+ ..+..+++.+||+.|.
T Consensus 154 ~~~~~~~~Ga~~i~l~DT--~G~~-~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~GlA-~AN~laA~~aGa~~id 223 (274)
T cd07938 154 VAERLLDLGCDEISLGDT--IGVA-TPAQVRRLLEAVLERFP--DEKLALHFHDTRGQA-LANILAALEAGVRRFD 223 (274)
T ss_pred HHHHHHHcCCCEEEECCC--CCcc-CHHHHHHHHHHHHHHCC--CCeEEEEECCCCChH-HHHHHHHHHhCCCEEE
Confidence 345567889999887432 3432 33445677777777653 46766544 553 4666778888988654
No 473
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=91.25 E-value=1.6 Score=39.59 Aligned_cols=71 Identities=25% Similarity=0.315 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCEEEEec--CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeecccc
Q 020013 121 DEARKAVNAGVDAIIVQG--REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRF 198 (332)
Q Consensus 121 ~~a~~a~~~g~D~ivv~G--~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~f 198 (332)
+.+....+.|+++|-|-- .-.| +.+..+..+++.+ ++|++.===|-++.++.++..+|||+|.+=.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~-------Gs~~dL~~v~~~~---~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFG-------GSLEDLRAVRKAV---DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCH-------HHHHHHHHHHHHS---SS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCCCC-------CCHHHHHHHHHHh---CCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 445666788999998721 1122 3477888888887 799998887889999999999999999998888
Q ss_pred ccC
Q 020013 199 VAS 201 (332)
Q Consensus 199 l~t 201 (332)
+..
T Consensus 142 L~~ 144 (254)
T PF00218_consen 142 LSD 144 (254)
T ss_dssp SGH
T ss_pred CCH
Confidence 755
No 474
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.23 E-value=1.5 Score=39.55 Aligned_cols=83 Identities=27% Similarity=0.271 Sum_probs=55.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCCEEEEecCC---CCcccCCCCch----hhhHHHHHHHhCCCCCcEEeecCc--CCHH
Q 020013 109 AGVKVVPQVGSFDEARKAVNAGVDAIIVQGRE---AGGHVIGQDGL----ISLLPMVVDLIGDRDIPIIAAGGI--VDAR 179 (332)
Q Consensus 109 ~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e---aGGh~~~~~~~----~~ll~~i~~~~~~~~iPviaaGGI--~~~~ 179 (332)
.+..+++.+.+.-.|+.+.+.|.|++.+.|+. +-|+.+....+ ...+..|.... ++|+++.+-. ++.+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~~G~g~~~ 84 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADADTGYGNAL 84 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcCCCCCCHH
Confidence 35667788999999999999999999997652 22444322222 23334444444 7999998655 3433
Q ss_pred H----HHHHHHcCcceeee
Q 020013 180 G----YVAALSLGAQGICL 194 (332)
Q Consensus 180 ~----v~~al~~GA~gV~~ 194 (332)
+ +..++..|++||.+
T Consensus 85 ~~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 85 NVARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 3 45666789999999
No 475
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.18 E-value=12 Score=34.24 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc----HHHHHHHHhCCCEEEEec-----CCHH----HHHHHHHcCCCEEEEecCCCCc
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS----EELVLEAHSAGVKVVPQV-----GSFD----EARKAVNAGVDAIIVQGREAGG 143 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~----~~~i~~~~~~g~~v~~~v-----~s~~----~a~~a~~~g~D~ivv~G~eaGG 143 (332)
.+.++.+.+.+++.|.+.+.... .+.++.+++.|..|.... .+.+ .++.+.+.|+|.|.+--+ .|
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT--~G 162 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS--FG 162 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC--CC
Confidence 46677788889999877643221 245667788898876543 2333 344567889999988433 33
Q ss_pred ccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCccee
Q 020013 144 HVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGI 192 (332)
Q Consensus 144 h~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV 192 (332)
.. .+.....+++.+++.++. ++|+-.-+ |.+ ..+..+++.+||+-|
T Consensus 163 ~~-~P~~v~~lv~~l~~~~~~-~~~i~~H~Hn~~Gla-~AN~laA~~aGa~~v 212 (266)
T cd07944 163 SM-YPEDIKRIISLLRSNLDK-DIKLGFHAHNNLQLA-LANTLEAIELGVEII 212 (266)
T ss_pred CC-CHHHHHHHHHHHHHhcCC-CceEEEEeCCCccHH-HHHHHHHHHcCCCEE
Confidence 32 233456677777776621 27774433 332 345566777887644
No 476
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=91.18 E-value=2.1 Score=39.15 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCcHHHHHHHHh--CCCEEEEecC---CHHHHHH
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYSEELVLEAHS--AGVKVVPQVG---SFDEARK 125 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~--~g~~v~~~v~---s~~~a~~ 125 (332)
+++.++++|+. .|+-..+-+.....+.++.++++|+|+|.+. ...|+++.+.++. ..-.++..++ +.+.+..
T Consensus 174 i~~Av~~aR~~--~~~~~kIEVEvesle~~~eAl~agaDiImLD-Nm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~ 250 (280)
T COG0157 174 ITEAVRRARAA--APFTKKIEVEVESLEEAEEALEAGADIIMLD-NMSPEELKEAVKLLGLAGRALLEASGGITLENIRE 250 (280)
T ss_pred HHHHHHHHHHh--CCCCceEEEEcCCHHHHHHHHHcCCCEEEec-CCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHH
Confidence 66778888775 3444444444444678889999999999996 2234444333333 2224555554 6788888
Q ss_pred HHHcCCCEEEE
Q 020013 126 AVNAGVDAIIV 136 (332)
Q Consensus 126 a~~~g~D~ivv 136 (332)
....|+|+|.+
T Consensus 251 yA~tGVD~IS~ 261 (280)
T COG0157 251 YAETGVDVISV 261 (280)
T ss_pred HhhcCCCEEEe
Confidence 88999999987
No 477
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.16 E-value=3.9 Score=38.36 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhhc--CCcEEEEeecCC-CC---HHHHHHHHhcCCcEEEEccCC-------Cc--HHHHHHHHhC-
Q 020013 46 EAPDYLRDLIRKTRSLT--ERPFGVGVVLAF-PH---NENIKAILSEKVAVLQVSWGE-------YS--EELVLEAHSA- 109 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~--~~p~gvnl~~~~-~~---~~~~~~~~~~~~~~I~~~~g~-------~~--~~~i~~~~~~- 109 (332)
..++.+.++++.+++.+ +.|+.|.+-... .. .+.++.+.+.|++.|.+|... ++ .+.++++++.
T Consensus 114 ~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~ 193 (312)
T PRK10550 114 KDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL 193 (312)
T ss_pred cCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc
Confidence 46788889999998875 478888764322 11 244566778899999998421 11 2456777664
Q ss_pred CCEEEE--ecCCHHHHHHHH-HcCCCEEEE
Q 020013 110 GVKVVP--QVGSFDEARKAV-NAGVDAIIV 136 (332)
Q Consensus 110 g~~v~~--~v~s~~~a~~a~-~~g~D~ivv 136 (332)
+++|+. .+.|++++.... ..|+|+|.+
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 678874 478999999877 468999988
No 478
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.10 E-value=3.1 Score=39.18 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeecCCC-CHHHHHHHHhcCCcEEEEccCC--C-----------------------cHHH
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVLAFP-HNENIKAILSEKVAVLQVSWGE--Y-----------------------SEEL 102 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~~~~-~~~~~~~~~~~~~~~I~~~~g~--~-----------------------~~~~ 102 (332)
+.+.+.++.+++.++.|+.|.+-.+.. ..+..+.+.+.|+|.|.++... . ..++
T Consensus 149 ~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~ 228 (325)
T cd04739 149 QRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRW 228 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHH
Confidence 456788888988888999998765432 2456677788999999875211 0 0123
Q ss_pred HHHHHh-CCCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHS-AGVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~-~g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
+.++++ ..++++. .+.|.+++.+.+.+|||.|-+
T Consensus 229 v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv 265 (325)
T cd04739 229 IAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMT 265 (325)
T ss_pred HHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEE
Confidence 444443 2567764 478999999999999999987
No 479
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.09 E-value=1.8 Score=38.95 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=53.5
Q ss_pred CCEEEEecCCHHHHHHHHHcCCCEEEEecCC---CCcccCCC-Cch---hhhHHHHHHHhCCCCCcEEeecCcC---CHH
Q 020013 110 GVKVVPQVGSFDEARKAVNAGVDAIIVQGRE---AGGHVIGQ-DGL---ISLLPMVVDLIGDRDIPIIAAGGIV---DAR 179 (332)
Q Consensus 110 g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~e---aGGh~~~~-~~~---~~ll~~i~~~~~~~~iPviaaGGI~---~~~ 179 (332)
...+++.+.+.-.|+.+.++|+|+|.+.+.. .-|+.+.. .+. ...++.+.+..+ .+||++..=-+ +++
T Consensus 12 ~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~--~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 12 ERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP--LALIVADLPFGAYGAPT 89 (240)
T ss_pred CeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC--CCCEEEeCCCCCCcCHH
Confidence 3456678889999999999999999996642 12333221 122 333344444431 37999875333 324
Q ss_pred H----HHHHHHcCcceeee
Q 020013 180 G----YVAALSLGAQGICL 194 (332)
Q Consensus 180 ~----v~~al~~GA~gV~~ 194 (332)
+ +.+++++||+||-+
T Consensus 90 ~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 4 56778899999998
No 480
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=91.08 E-value=8.9 Score=34.25 Aligned_cols=124 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred eecCCCCHHHHHHHHhcCCcEEEE------ccCCCcHHHHHHHHhC---CCEEEEecC--------CHHHHHHHHHcCCC
Q 020013 70 VVLAFPHNENIKAILSEKVAVLQV------SWGEYSEELVLEAHSA---GVKVVPQVG--------SFDEARKAVNAGVD 132 (332)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~I~~------~~g~~~~~~i~~~~~~---g~~v~~~v~--------s~~~a~~a~~~g~D 132 (332)
+.+...+.+....+++.++|+|.+ +.|-.++.+++.+++. ..++-..++ -...+..+...|+|
T Consensus 3 lLvSv~~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gvd 82 (235)
T PF04476_consen 3 LLVSVRNVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVD 82 (235)
T ss_pred eeecCCCHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCC
Q ss_pred EEEEecCCCCcccCCCCchhhhHHHHHHHhCC-CCCcEEeecCcCCH---------HHHHHHHHcCcceeeeccc
Q 020013 133 AIIVQGREAGGHVIGQDGLISLLPMVVDLIGD-RDIPIIAAGGIVDA---------RGYVAALSLGAQGICLGTR 197 (332)
Q Consensus 133 ~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~-~~iPviaaGGI~~~---------~~v~~al~~GA~gV~~GT~ 197 (332)
||.+ |.-..+.. ......+..+.+.++. ..-..+.+-+.+|. +-...+.++|++|+++-|+
T Consensus 83 yvKv-Gl~g~~~~---~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa 153 (235)
T PF04476_consen 83 YVKV-GLFGCKDY---DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTA 153 (235)
T ss_pred EEEE-ecCCCCCH---HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecc
No 481
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=91.01 E-value=1.8 Score=38.36 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=42.3
Q ss_pred HHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEE-ecCCHHHHHHHHHcCCCEEEEe
Q 020013 81 KAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVP-QVGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 81 ~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~-~v~s~~~a~~a~~~g~D~ivv~ 137 (332)
+.+...++..+..+.....++.++.+++.|.+++. .+.+.+++..+.+.|+|+|+..
T Consensus 171 ~~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD 228 (230)
T cd08563 171 DYAKKIGADSLHPDFKLLTEEVVEELKKRGIPVRLWTVNEEEDMKRLKDLGVDGIITN 228 (230)
T ss_pred HHHHHhCCEEEccCchhcCHHHHHHHHHCCCEEEEEecCCHHHHHHHHHCCCCEEeCC
Confidence 33444455566554433456889999999998874 5788999999999999999853
No 482
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=90.96 E-value=4.7 Score=35.59 Aligned_cols=90 Identities=20% Similarity=0.362 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEEeecCCC----CHHHHHHHHhcCCcEEEEccCC--------CcHHHHHHHHh-CCCEE
Q 020013 47 APDYLRDLIRKTRSLTERPFGVGVVLAFP----HNENIKAILSEKVAVLQVSWGE--------YSEELVLEAHS-AGVKV 113 (332)
Q Consensus 47 ~~e~~~~~i~~~r~~~~~p~gvnl~~~~~----~~~~~~~~~~~~~~~I~~~~g~--------~~~~~i~~~~~-~g~~v 113 (332)
.++.+.+.++.+++....|+.+.+-.... ..+.++.+.+.|++.|.++... ...+.++.+++ .+++|
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipv 186 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPV 186 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeE
Confidence 56778888999988766677765433221 1234566677899999876321 11245566655 36777
Q ss_pred EE--ecCCHHHHHHHHHc-CCCEEEE
Q 020013 114 VP--QVGSFDEARKAVNA-GVDAIIV 136 (332)
Q Consensus 114 ~~--~v~s~~~a~~a~~~-g~D~ivv 136 (332)
+. .+.+.+++.++.+. |+|+|.+
T Consensus 187 i~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 187 IANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred EEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 64 47799999999887 8999988
No 483
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.95 E-value=8 Score=34.78 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=72.3
Q ss_pred HHHHHHhcCCcEEEEccCCCc---------HHHHHHHHhCC--CEEEEecCC-HHHHHHHHHcCCCEEEEecCCCCcccC
Q 020013 79 NIKAILSEKVAVLQVSWGEYS---------EELVLEAHSAG--VKVVPQVGS-FDEARKAVNAGVDAIIVQGREAGGHVI 146 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~---------~~~i~~~~~~g--~~v~~~v~s-~~~a~~a~~~g~D~ivv~G~eaGGh~~ 146 (332)
.++.+.+.|++.|.+.++.++ .+.++.+++.+ .++...+.+ .+.++.+.+.|+|.|-+.-...--|..
T Consensus 24 i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~ 103 (265)
T cd03174 24 IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSR 103 (265)
T ss_pred HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHH
Confidence 345566678888888755433 35667777665 676666665 788999999999998875432112210
Q ss_pred -----CCCchhhhHHHHHHHhCCCCCcEEe----ecC-cCCHHHHH----HHHHcCcceeeeccccccCccCCCCHHHHH
Q 020013 147 -----GQDGLISLLPMVVDLIGDRDIPIIA----AGG-IVDARGYV----AALSLGAQGICLGTRFVASEESYAHPEYKR 212 (332)
Q Consensus 147 -----~~~~~~~ll~~i~~~~~~~~iPvia----aGG-I~~~~~v~----~al~~GA~gV~~GT~fl~t~Es~~~~~~k~ 212 (332)
+....+..+....+..+..++++.. +.+ ..+.+.+. .+.++|++.+.+. -|.....++.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~----Dt~G~~~P~~v~~ 179 (265)
T cd03174 104 KNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK----DTVGLATPEEVAE 179 (265)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec----hhcCCcCHHHHHH
Confidence 1111233333333222222344333 233 22444443 4456899988863 2233344455555
Q ss_pred HHhc
Q 020013 213 KLVE 216 (332)
Q Consensus 213 ~~~~ 216 (332)
.+-.
T Consensus 180 li~~ 183 (265)
T cd03174 180 LVKA 183 (265)
T ss_pred HHHH
Confidence 5444
No 484
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=90.94 E-value=13 Score=34.28 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCCCEEEEe----
Q 020013 49 DYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAGVKVVPQ---- 116 (332)
Q Consensus 49 e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g~~v~~~---- 116 (332)
+.+...+..+-+..+.|+.+++=-- ...+.+..+++.|...+=+.....| .++++.++..|+.|=..
T Consensus 61 ~~~~~~v~~~a~~~~vPV~lHlDHg-~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~ 139 (286)
T COG0191 61 DSLAHMVKALAEKYGVPVALHLDHG-ASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTL 139 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 3444444444333344544443111 1245566667777766655422222 24566677767655221
Q ss_pred ---------------cCCHHHHHHHHHc-CCCEEEE-ecCCCCcccCC-CCchhhhHHHHHHHhCCCCCcEEeec--CcC
Q 020013 117 ---------------VGSFDEARKAVNA-GVDAIIV-QGREAGGHVIG-QDGLISLLPMVVDLIGDRDIPIIAAG--GIV 176 (332)
Q Consensus 117 ---------------v~s~~~a~~a~~~-g~D~ivv-~G~eaGGh~~~-~~~~~~ll~~i~~~~~~~~iPviaaG--GI~ 176 (332)
.+++++++...+. |+|.+-+ -|.-=|=...+ +...+..|.++.+.+ ++|++.-| ||
T Consensus 140 GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~---~~PlVlHGgSGi- 215 (286)
T COG0191 140 GGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV---SLPLVLHGGSGI- 215 (286)
T ss_pred cCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHh---CCCEEEeCCCCC-
Confidence 3467788777665 6999876 23211111111 224578889999888 69998766 56
Q ss_pred CHHHHHHHHHcCcceeeecccccc
Q 020013 177 DARGYVAALSLGAQGICLGTRFVA 200 (332)
Q Consensus 177 ~~~~v~~al~~GA~gV~~GT~fl~ 200 (332)
.-+++.+++.+|..-|=+.|-+-.
T Consensus 216 p~~eI~~aI~~GV~KvNi~Td~~~ 239 (286)
T COG0191 216 PDEEIREAIKLGVAKVNIDTDLQL 239 (286)
T ss_pred CHHHHHHHHHhCceEEeeCcHHHH
Confidence 568899999999999988876443
No 485
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=90.86 E-value=1 Score=41.33 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=60.5
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEec------CCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH
Q 020013 113 VVPQVGSFDEARKAVNAGVDAIIVQG------REAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS 186 (332)
Q Consensus 113 v~~~v~s~~~a~~a~~~g~D~ivv~G------~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~ 186 (332)
|+-.|.++++|+.|+++|+-+|.+-- +..||- ........+.++.+.+ ++|||+-==|+.-..+....+
T Consensus 13 vimdv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv--~R~~~p~~I~~I~~~V---~iPVig~~kigh~~Ea~~L~~ 87 (287)
T TIGR00343 13 VIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGV--ARMSDPKMIKEIMDAV---SIPVMAKVRIGHFVEAQILEA 87 (287)
T ss_pred eEEEeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCe--eecCCHHHHHHHHHhC---CCCEEEEeeccHHHHHHHHHH
Confidence 56789999999999999998887621 234554 2345677889999988 899999888877788888889
Q ss_pred cCcceee
Q 020013 187 LGAQGIC 193 (332)
Q Consensus 187 ~GA~gV~ 193 (332)
+|+|-+-
T Consensus 88 ~GvDiID 94 (287)
T TIGR00343 88 LGVDYID 94 (287)
T ss_pred cCCCEEE
Confidence 9999884
No 486
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=90.73 E-value=0.9 Score=41.94 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=48.2
Q ss_pred HHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHH----HHHHcCcceeeeccc
Q 020013 122 EARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYV----AALSLGAQGICLGTR 197 (332)
Q Consensus 122 ~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~----~al~~GA~gV~~GT~ 197 (332)
.++...+.|+|+|++-|..+-++......-..++..+++..+. ++||++.=|=.+-+++. .+-.+|||++++...
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-RVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 4455678899999997765444432222235566667776643 68877643332444443 334589999999877
Q ss_pred cccC
Q 020013 198 FVAS 201 (332)
Q Consensus 198 fl~t 201 (332)
+...
T Consensus 106 ~~~~ 109 (289)
T PF00701_consen 106 YYFK 109 (289)
T ss_dssp TSSS
T ss_pred cccc
Confidence 6653
No 487
>PRK02227 hypothetical protein; Provisional
Probab=90.72 E-value=1.4 Score=39.39 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=56.5
Q ss_pred EEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecC-cC-CHHHH----HHHH
Q 020013 112 KVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGG-IV-DARGY----VAAL 185 (332)
Q Consensus 112 ~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGG-I~-~~~~v----~~al 185 (332)
+++..+.|.+||+.+.+.|+|.|=+..+..|--. ..+ ...++++++.+.. ..||=++=| +- .+..+ ..+-
T Consensus 2 ~lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLG--A~~-p~vir~Iv~~~~~-~~pvSAtiGD~p~~p~~~~~aa~~~a 77 (238)
T PRK02227 2 RLLVSVRNLEEALEALAGGADIIDVKNPKEGSLG--ANF-PWVIREIVAAVPG-RKPVSATIGDVPYKPGTISLAALGAA 77 (238)
T ss_pred ceeeccCCHHHHHHHHhcCCCEEEccCCCCCCCC--CCC-HHHHHHHHHHhCC-CCCceeeccCCCCCchHHHHHHHHHH
Confidence 4677899999999999999999999998766542 222 3456778877753 467776444 31 23222 3333
Q ss_pred HcCcceeeeccc
Q 020013 186 SLGAQGICLGTR 197 (332)
Q Consensus 186 ~~GA~gV~~GT~ 197 (332)
..|+|-|-+|-.
T Consensus 78 ~~GvDyVKvGl~ 89 (238)
T PRK02227 78 ATGADYVKVGLY 89 (238)
T ss_pred hhCCCEEEEcCC
Confidence 479999999865
No 488
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=90.71 E-value=4.4 Score=35.77 Aligned_cols=107 Identities=26% Similarity=0.264 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCcEEEEc-cCCCcHH---H----HHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 77 NENIKAILSEKVAVLQVS-WGEYSEE---L----VLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~-~g~~~~~---~----i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
.+.++.+++.|++.+++= -+....+ . ...+++.+++++.. +....|.+.++|+| |.+..
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liIN----d~~dlA~~~~AdGV---------HlGq~ 90 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIN----DRVDLALAVGADGV---------HLGQD 90 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEec----CcHHHHHhCCCCEE---------EcCCc
Confidence 367888899999999983 2222222 2 22345678887754 34556778899998 44222
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccccCc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFVASE 202 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl~t~ 202 (332)
... +...++.+ .-..+..-.+++.+.+.++.++|+|-|.+|.-|=...
T Consensus 91 D~~---~~~ar~~~---~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~t 138 (211)
T COG0352 91 DMP---LAEARELL---GPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTST 138 (211)
T ss_pred ccc---hHHHHHhc---CCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCC
Confidence 111 23333333 2345666777799999999999999999998775443
No 489
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=90.65 E-value=16 Score=34.79 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcCCcEEEEeecCCC-----C-------HHHHHHHHhcCCcEEEEccCCCc--------HHHHHHHHhCC
Q 020013 51 LRDLIRKTRSLTERPFGVGVVLAFP-----H-------NENIKAILSEKVAVLQVSWGEYS--------EELVLEAHSAG 110 (332)
Q Consensus 51 ~~~~i~~~r~~~~~p~gvnl~~~~~-----~-------~~~~~~~~~~~~~~I~~~~g~~~--------~~~i~~~~~~g 110 (332)
+...+..+.+..+.|+.+++=--.. . .+.+..+.+.|...|-+.....| .++++..+..|
T Consensus 75 ~~~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~g 154 (345)
T cd00946 75 AAHHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKIN 154 (345)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4445555555557888887632211 0 12223333556777766533222 23455566556
Q ss_pred CEEE---------------------EecCCHHHHHHHHHc-----CCCEEEE-ecCCCCcccC-CCCchhhhHHHHHHH-
Q 020013 111 VKVV---------------------PQVGSFDEARKAVNA-----GVDAIIV-QGREAGGHVI-GQDGLISLLPMVVDL- 161 (332)
Q Consensus 111 ~~v~---------------------~~v~s~~~a~~a~~~-----g~D~ivv-~G~eaGGh~~-~~~~~~~ll~~i~~~- 161 (332)
+.|= ...+++++|....+. |+|.+-+ .|.-=|-... .+.-.+.++.++.+.
T Consensus 155 vsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i 234 (345)
T cd00946 155 MWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYV 234 (345)
T ss_pred CEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHH
Confidence 5441 013678899887764 8898866 3331111111 122358888888443
Q ss_pred ---hC---CCCCcEEeecCcCCH-HHHHHHHHcCcceeeeccccccC
Q 020013 162 ---IG---DRDIPIIAAGGIVDA-RGYVAALSLGAQGICLGTRFVAS 201 (332)
Q Consensus 162 ---~~---~~~iPviaaGGI~~~-~~v~~al~~GA~gV~~GT~fl~t 201 (332)
+. ..++|++.-||=+.+ +++.+++..|..-|=++|.+..+
T Consensus 235 ~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~a 281 (345)
T cd00946 235 REKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWA 281 (345)
T ss_pred HHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHHH
Confidence 21 025898887765444 77899999999999999987544
No 490
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=90.61 E-value=0.66 Score=43.34 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHH-cCcceeeecccc
Q 020013 120 FDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALS-LGAQGICLGTRF 198 (332)
Q Consensus 120 ~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT~f 198 (332)
.+.++..++.|+--|++...+.-|.. .--.+.|++.+.+.+ +||||++.|-++++...+++. .-||+ .++..+
T Consensus 444 ~ELtrAcEalGAGEiLLNCiD~DGsn--~GyDieLv~lvkdsV---~IPVIASSGAG~P~HFeEvF~kT~adA-aLaAGi 517 (541)
T KOG0623|consen 444 FELTRACEALGAGEILLNCIDCDGSN--KGYDIELVKLVKDSV---GIPVIASSGAGTPDHFEEVFEKTNADA-ALAAGI 517 (541)
T ss_pred hhHHHHHHHhCcchheeeeeccCCCC--CCcchhHHHHhhccc---CCceEecCCCCCcHHHHHHHHhcCchh-hhhccc
Confidence 45566677788888887665554442 124578898888888 899999999999999998886 45554 456667
Q ss_pred ccCccCCCCHHHHHHHhc
Q 020013 199 VASEESYAHPEYKRKLVE 216 (332)
Q Consensus 199 l~t~Es~~~~~~k~~~~~ 216 (332)
+..+|+++. ..|+.+..
T Consensus 518 FHR~e~~i~-dVKEyL~e 534 (541)
T KOG0623|consen 518 FHRKEVPIQ-DVKEYLQE 534 (541)
T ss_pred eecCccchH-HHHHHHHh
Confidence 778888764 46777664
No 491
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=90.58 E-value=2.3 Score=40.17 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=59.1
Q ss_pred HHHHHHHhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHH
Q 020013 101 ELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARG 180 (332)
Q Consensus 101 ~~i~~~~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~ 180 (332)
.+.+.+++.|+.++.++-+.+.+..+.+.|+|++-+-. +....+.||..+.+. +.|||.+=|.++.++
T Consensus 80 ~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS--------~~~~n~pLL~~~A~~----gkPvilStGmatl~E 147 (329)
T TIGR03569 80 ELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPS--------GEITNAPLLKKIARF----GKPVILSTGMATLEE 147 (329)
T ss_pred HHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECc--------ccccCHHHHHHHHhc----CCcEEEECCCCCHHH
Confidence 34556677899999999999999999999999998811 223447788887763 789999999999999
Q ss_pred HHHHHH
Q 020013 181 YVAALS 186 (332)
Q Consensus 181 v~~al~ 186 (332)
+..++.
T Consensus 148 i~~Av~ 153 (329)
T TIGR03569 148 IEAAVG 153 (329)
T ss_pred HHHHHH
Confidence 987775
No 492
>PRK04302 triosephosphate isomerase; Provisional
Probab=90.56 E-value=11 Score=33.41 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=67.6
Q ss_pred CCCcHH-HHHHHHhCCCceeecC--CCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc---
Q 020013 21 DISGPE-LVAAVANAGGLGLLRA--PDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS--- 94 (332)
Q Consensus 21 g~s~~~-la~avs~aGglG~i~~--~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~--- 94 (332)
|..+.+ .+..+.++|.=+++.. .+....+++.+.++.++++ |+..++..+..+.++.+.+.++++|..-
T Consensus 70 G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~-----Gl~~I~~v~~~~~~~~~~~~~~~~I~~~p~~ 144 (223)
T PRK04302 70 GSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL-----GLESVVCVNNPETSAAAAALGPDYVAVEPPE 144 (223)
T ss_pred CCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC-----CCeEEEEcCCHHHHHHHhcCCCCEEEEeCcc
Confidence 334444 4666777887777743 2235566777777777653 2222222223556666777788887531
Q ss_pred -cC-------CCcH---HHHHHHHhC--CCEEE--EecCCHHHHHHHHHcCCCEEEE
Q 020013 95 -WG-------EYSE---ELVLEAHSA--GVKVV--PQVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 95 -~g-------~~~~---~~i~~~~~~--g~~v~--~~v~s~~~a~~a~~~g~D~ivv 136 (332)
.| ..+. ++++.+++. +++++ ..+.+.+++..+.+.|+|++++
T Consensus 145 ~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 145 LIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 11 1122 334456652 56666 4577999999999999999998
No 493
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=90.56 E-value=2.4 Score=37.97 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=88.8
Q ss_pred CcHHHHHHHH-hCCCceeecCCCCCCHHHHHHHHHHHHhhcCCcEEEEeecCCCCHHHHHHHHhcCCcEEEEc-------
Q 020013 23 SGPELVAAVA-NAGGLGLLRAPDWEAPDYLRDLIRKTRSLTERPFGVGVVLAFPHNENIKAILSEKVAVLQVS------- 94 (332)
Q Consensus 23 s~~~la~avs-~aGglG~i~~~~~~~~e~~~~~i~~~r~~~~~p~gvnl~~~~~~~~~~~~~~~~~~~~I~~~------- 94 (332)
.+|-.++..+ ++|+=|+..-.+-..-.--.+.+..+++....| .|+=++. .++.++.+++.+|+.+++-
T Consensus 22 Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~--lNlE~a~-t~e~~~ia~~~kP~~vtLVPE~r~e~ 98 (239)
T PF03740_consen 22 PDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTP--LNLEMAP-TEEMVDIALKVKPDQVTLVPEKREEL 98 (239)
T ss_dssp S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSE--EEEEEES-SHHHHHHHHHH--SEEEEE--SGGGB
T ss_pred CCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccC--EEeccCC-CHHHHHHHHhCCcCEEEECCCCCCCc
Confidence 4554444444 455556553221000000123455666665666 4444432 3789999999999998763
Q ss_pred ---cCCC-------cHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEEe-cCCCCcccCCCCchhhhHHHHHHH-
Q 020013 95 ---WGEY-------SEELVLEAHSAGVKVVPQVG-SFDEARKAVNAGVDAIIVQ-GREAGGHVIGQDGLISLLPMVVDL- 161 (332)
Q Consensus 95 ---~g~~-------~~~~i~~~~~~g~~v~~~v~-s~~~a~~a~~~g~D~ivv~-G~eaGGh~~~~~~~~~ll~~i~~~- 161 (332)
.|.. ..++++++++.|++|-.-+. ++++.+.+.+.|+|.|=+. |..+--+.......-.++..+.+.
T Consensus 99 TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa 178 (239)
T PF03740_consen 99 TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAA 178 (239)
T ss_dssp STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHH
Confidence 1211 23678889999999876664 6788888999999999773 221110100000111122333332
Q ss_pred --hCCCCCcEEeecCcCCHHHHHHHHHc-Ccceeeeccccc
Q 020013 162 --IGDRDIPIIAAGGIVDARGYVAALSL-GAQGICLGTRFV 199 (332)
Q Consensus 162 --~~~~~iPviaaGGI~~~~~v~~al~~-GA~gV~~GT~fl 199 (332)
....++-|=+..|+ |.+|+....+. +-.-|-+|-+++
T Consensus 179 ~~a~~lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaii 218 (239)
T PF03740_consen 179 RYAHELGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAII 218 (239)
T ss_dssp HHHHHTT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHH
T ss_pred HHHHHcCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHH
Confidence 21236889999999 88999887764 456666665543
No 494
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=90.54 E-value=2.3 Score=38.70 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=44.7
Q ss_pred HHHHHHhcCCcEEEEccCCCcHHHHHHHHhCCCEEEEe-----cCCHHHHHHHHHcCCCEEEEe
Q 020013 79 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQ-----VGSFDEARKAVNAGVDAIIVQ 137 (332)
Q Consensus 79 ~~~~~~~~~~~~I~~~~g~~~~~~i~~~~~~g~~v~~~-----v~s~~~a~~a~~~g~D~ivv~ 137 (332)
.+..+...++..+.++.....+++++.+++.|++++.. +.+.++++.+.+.|+|+|+..
T Consensus 192 ~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD 255 (265)
T cd08564 192 FLEQAKYYNATWVNFSYDFWTEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPN 255 (265)
T ss_pred HHHHHHhcCCceeeechhhhhHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcC
Confidence 34555556777777654334567889999999998876 467889999999999999863
No 495
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.53 E-value=16 Score=34.62 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=71.6
Q ss_pred CHHHHHHHHhcCCcEEEEccCCC----cHHHHHHHHhCCCEEEEec-----CCHH----HHHHHHHcCCCEEEEecCCCC
Q 020013 76 HNENIKAILSEKVAVLQVSWGEY----SEELVLEAHSAGVKVVPQV-----GSFD----EARKAVNAGVDAIIVQGREAG 142 (332)
Q Consensus 76 ~~~~~~~~~~~~~~~I~~~~g~~----~~~~i~~~~~~g~~v~~~v-----~s~~----~a~~a~~~g~D~ivv~G~eaG 142 (332)
..+.++.+.+.+++.|.+..... ..+.++.+++.|..+.... .+++ .++.+.+.|+|.|.+.- ..
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~D--T~ 166 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVD--SA 166 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEcc--CC
Confidence 35678899999999987653322 2356777888898876443 2443 34566788999988743 34
Q ss_pred cccCCCCchhhhHHHHHHHhCCCCCcEEeec----CcCCHHHHHHHHHcCcceee
Q 020013 143 GHVIGQDGLISLLPMVVDLIGDRDIPIIAAG----GIVDARGYVAALSLGAQGIC 193 (332)
Q Consensus 143 Gh~~~~~~~~~ll~~i~~~~~~~~iPviaaG----GI~~~~~v~~al~~GA~gV~ 193 (332)
|.. .+.....++..+++.++. ++||-.-+ |.+ -.|..+++.+||+-|-
T Consensus 167 G~~-~P~~v~~~v~~l~~~l~~-~i~ig~H~HnnlGla-~ANslaAi~aGa~~iD 218 (333)
T TIGR03217 167 GAM-LPDDVRDRVRALKAVLKP-ETQVGFHAHHNLSLA-VANSIAAIEAGATRID 218 (333)
T ss_pred CCC-CHHHHHHHHHHHHHhCCC-CceEEEEeCCCCchH-HHHHHHHHHhCCCEEE
Confidence 443 333456677777776631 37775544 342 3456677889988654
No 496
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=90.50 E-value=0.71 Score=41.93 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=60.3
Q ss_pred HHHHHhcCCcEEEEcc-------CCCc--HHHHHHHHh-----CCCEEEEecC--CHH-HH----HHHHHcCCCEEEE-e
Q 020013 80 IKAILSEKVAVLQVSW-------GEYS--EELVLEAHS-----AGVKVVPQVG--SFD-EA----RKAVNAGVDAIIV-Q 137 (332)
Q Consensus 80 ~~~~~~~~~~~I~~~~-------g~~~--~~~i~~~~~-----~g~~v~~~v~--s~~-~a----~~a~~~g~D~ivv-~ 137 (332)
.+.+++.|++=|.+-. |+.. .+.++.+.+ .-+|||.... +.+ +. +.+.++|+|+|.- .
T Consensus 89 a~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTST 168 (257)
T PRK05283 89 TRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTST 168 (257)
T ss_pred HHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 4567778887765421 2211 122233332 1257776543 323 23 3467899999986 4
Q ss_pred cCCCCcccCCCCchhhhHHHHHHHhC-CCCCcEEeecCcCCHHHHHHHHHcCcc
Q 020013 138 GREAGGHVIGQDGLISLLPMVVDLIG-DRDIPIIAAGGIVDARGYVAALSLGAQ 190 (332)
Q Consensus 138 G~eaGGh~~~~~~~~~ll~~i~~~~~-~~~iPviaaGGI~~~~~v~~al~~GA~ 190 (332)
|+..+|- ......++.+...... ..++-|=++|||.|.+++.+++.+|.+
T Consensus 169 Gf~~~gA---t~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 169 GKVPVNA---TLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred CCCCCCC---CHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 5432221 1223334433322110 125789999999999999999998754
No 497
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=90.50 E-value=2.8 Score=40.08 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCcEEEEc-------cCCCcH---HHHHHHHhCCCEEEEecCCHHH------HHH--------HHHcCC--
Q 020013 78 ENIKAILSEKVAVLQVS-------WGEYSE---ELVLEAHSAGVKVVPQVGSFDE------ARK--------AVNAGV-- 131 (332)
Q Consensus 78 ~~~~~~~~~~~~~I~~~-------~g~~~~---~~i~~~~~~g~~v~~~v~s~~~------a~~--------a~~~g~-- 131 (332)
-..+.+.+.|++++.++ |++... .-++.+.+.|+..+..++...+ ... .+ .++
T Consensus 86 VS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l-~~v~~ 164 (355)
T PRK14905 86 ISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGL-HGVSA 164 (355)
T ss_pred CCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHH-ccCCH
Confidence 34667888999999875 343221 1233456789988887775332 111 11 111
Q ss_pred ----CEEEE-ecCCC-C--cccCCCC---chhhhHHHH-HHHhC--CCCCcEEeecCcCCHHHHHHHHH-cCcceeeecc
Q 020013 132 ----DAIIV-QGREA-G--GHVIGQD---GLISLLPMV-VDLIG--DRDIPIIAAGGIVDARGYVAALS-LGAQGICLGT 196 (332)
Q Consensus 132 ----D~ivv-~G~ea-G--Gh~~~~~---~~~~ll~~i-~~~~~--~~~iPviaaGGI~~~~~v~~al~-~GA~gV~~GT 196 (332)
..+++ +...+ | |....+. .....+++. .+.+. ..++||+..|+| +++++.+.+. .+.||+.+|+
T Consensus 165 ~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~ 243 (355)
T PRK14905 165 EQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSV-NLENANELIMKPHIDGLFIGR 243 (355)
T ss_pred hhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcC-CHHHHHHHhcCCCCCEEEech
Confidence 13333 44333 2 2221110 123334432 22221 125899999999 7899888775 6899999999
Q ss_pred ccc
Q 020013 197 RFV 199 (332)
Q Consensus 197 ~fl 199 (332)
+-+
T Consensus 244 asl 246 (355)
T PRK14905 244 SAW 246 (355)
T ss_pred hhc
Confidence 977
No 498
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=10 Score=36.10 Aligned_cols=112 Identities=26% Similarity=0.256 Sum_probs=0.0
Q ss_pred eecCCCCHHHHHHHHhcCCcEEEEccC---------CCcH----HHHHHHHhCCCEEEEecCC----------HHHHHHH
Q 020013 70 VVLAFPHNENIKAILSEKVAVLQVSWG---------EYSE----ELVLEAHSAGVKVVPQVGS----------FDEARKA 126 (332)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~I~~~~g---------~~~~----~~i~~~~~~g~~v~~~v~s----------~~~a~~a 126 (332)
+..+....+.+..+++.|+|.|.++.- .++. +.++.+++.|.++...+++ .+....+
T Consensus 9 ll~pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l 88 (347)
T COG0826 9 LLAPAGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRL 88 (347)
T ss_pred eecCCCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHH
Q ss_pred HHcCCCEEEEecCCCCcccCCCCchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeee
Q 020013 127 VNAGVDAIIVQGREAGGHVIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICL 194 (332)
Q Consensus 127 ~~~g~D~ivv~G~eaGGh~~~~~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~ 194 (332)
.+.|+|+|++ .+..++.-+++..+...+-+=..--+.|++.+.-+-.+|+.-+++
T Consensus 89 ~e~GvDaviv-------------~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl 143 (347)
T COG0826 89 VELGVDAVIV-------------ADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVL 143 (347)
T ss_pred HHcCCCEEEE-------------cCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEe
No 499
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=90.49 E-value=5.4 Score=37.76 Aligned_cols=90 Identities=11% Similarity=0.216 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeec--CCCC-----HHHHHHHHhcCCcEEEEccCC------C----------cHHH
Q 020013 46 EAPDYLRDLIRKTRSLTERPFGVGVVL--AFPH-----NENIKAILSEKVAVLQVSWGE------Y----------SEEL 102 (332)
Q Consensus 46 ~~~e~~~~~i~~~r~~~~~p~gvnl~~--~~~~-----~~~~~~~~~~~~~~I~~~~g~------~----------~~~~ 102 (332)
..++.+.++++.+++..+.|+.+.+-+ .... .+.++.+.+.|++.+.+|... . ..++
T Consensus 116 ~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~ 195 (333)
T PRK11815 116 AEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDR 195 (333)
T ss_pred cCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHH
Confidence 357788899999988778888875422 1111 234566778899999987321 0 1345
Q ss_pred HHHHHhC--CCEEEE--ecCCHHHHHHHHHcCCCEEEE
Q 020013 103 VLEAHSA--GVKVVP--QVGSFDEARKAVNAGVDAIIV 136 (332)
Q Consensus 103 i~~~~~~--g~~v~~--~v~s~~~a~~a~~~g~D~ivv 136 (332)
++++++. .++|+. .+.|++++.++.+ ++|+|.+
T Consensus 196 i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmI 232 (333)
T PRK11815 196 VYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMI 232 (333)
T ss_pred HHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEE
Confidence 6677663 678874 5789999998887 6999988
No 500
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.41 E-value=5.9 Score=34.38 Aligned_cols=104 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCcEEEEccCCCc-HHH---HHHH----HhCCCEEEEecCCHHHHHHHHHcCCCEEEEecCCCCcccCCC
Q 020013 77 NENIKAILSEKVAVLQVSWGEYS-EEL---VLEA----HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ 148 (332)
Q Consensus 77 ~~~~~~~~~~~~~~I~~~~g~~~-~~~---i~~~----~~~g~~v~~~v~s~~~a~~a~~~g~D~ivv~G~eaGGh~~~~ 148 (332)
.+.++.+.+.|++.|++...+.+ .++ ++.+ +..|++++.. +....+.+.|+|+|.+... .
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~a~~~gad~vh~~~~--------~ 91 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN----DRVDLALAVGADGVHLGQD--------D 91 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe----ChHHHHHHcCCCEEecCcc--------c
Confidence 34677788889999988533222 222 2222 3457777653 4567788899999876211 0
Q ss_pred CchhhhHHHHHHHhCCCCCcEEeecCcCCHHHHHHHHHcCcceeeeccccc
Q 020013 149 DGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGICLGTRFV 199 (332)
Q Consensus 149 ~~~~~ll~~i~~~~~~~~iPviaaGGI~~~~~v~~al~~GA~gV~~GT~fl 199 (332)
.. ...+.... +..++..--+.|.+++.++...|+|.|.+|.-|-
T Consensus 92 -~~---~~~~~~~~---~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~ 135 (212)
T PRK00043 92 -LP---VADARALL---GPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFP 135 (212)
T ss_pred -CC---HHHHHHHc---CCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccC
Confidence 11 11222221 1222223335688899999999999999885443
Done!