BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020014
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
           Protein In Vitro
 pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
           Protein In Living E. Coli Cells
          Length = 66

 Score = 31.2 bits (69), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 160 GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKER 210
           G+ C  C+  + K + K  GV    +  +K    V+GT D KAL + ++E 
Sbjct: 8   GMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEE 58


>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
          Length = 202

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 152 VMTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKER 210
           V+T  L++ G+HC+ C+  I + + +  GV    +  +  T  VK   D    + V    
Sbjct: 19  VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVK--YDPSCTSPV---A 73

Query: 211 LKRPVEIVPP 220
           L+R +E +PP
Sbjct: 74  LQRAIEALPP 83


>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
          Length = 71

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 160 GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEV-LKERL 211
           G+ C  C   I + + + KGV + S+      +TV  T D K ++E+ ++ER+
Sbjct: 11  GMRCAACASSIERALERLKGVAEASVTVATGRLTV--TYDPKQVSEITIQERI 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,593,078
Number of Sequences: 62578
Number of extensions: 72497
Number of successful extensions: 257
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 9
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)