Query 020014
Match_columns 332
No_of_seqs 279 out of 1982
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10671 copA copper exporting 99.3 1.8E-11 3.9E-16 131.9 16.6 160 52-218 3-164 (834)
2 PF00403 HMA: Heavy-metal-asso 99.2 3.5E-11 7.6E-16 88.2 7.7 58 156-214 1-62 (62)
3 KOG0207 Cation transport ATPas 99.2 3.9E-10 8.4E-15 118.8 14.5 157 35-220 52-216 (951)
4 KOG1603 Copper chaperone [Inor 99.1 6.1E-10 1.3E-14 84.9 8.7 66 152-218 4-70 (73)
5 PF00403 HMA: Heavy-metal-asso 99.1 3.9E-10 8.4E-15 82.6 7.4 58 55-113 1-62 (62)
6 KOG0207 Cation transport ATPas 99.0 2.4E-09 5.2E-14 113.0 12.4 133 60-222 3-141 (951)
7 KOG1603 Copper chaperone [Inor 99.0 2.3E-09 4.9E-14 81.8 7.1 66 50-115 3-68 (73)
8 COG2608 CopZ Copper chaperone 98.9 4.8E-09 1E-13 79.6 8.0 64 154-218 3-70 (71)
9 COG2608 CopZ Copper chaperone 98.9 6.3E-09 1.4E-13 79.0 7.3 64 52-116 2-69 (71)
10 KOG4656 Copper chaperone for s 98.6 1.6E-07 3.5E-12 84.1 7.1 70 50-120 5-74 (247)
11 KOG4656 Copper chaperone for s 98.5 3.1E-07 6.6E-12 82.3 7.5 68 152-220 6-73 (247)
12 PLN02957 copper, zinc superoxi 97.9 5.4E-05 1.2E-09 70.5 9.7 68 154-222 7-74 (238)
13 PRK10671 copA copper exporting 97.8 6.4E-05 1.4E-09 81.6 8.0 63 154-219 4-67 (834)
14 PLN02957 copper, zinc superoxi 97.6 0.00021 4.6E-09 66.5 8.5 69 50-119 4-72 (238)
15 COG2217 ZntA Cation transport 97.5 0.0002 4.4E-09 76.1 7.5 62 154-217 3-69 (713)
16 TIGR00003 copper ion binding p 97.3 0.0022 4.8E-08 43.7 8.1 60 155-215 4-67 (68)
17 COG2217 ZntA Cation transport 96.9 0.0016 3.5E-08 69.4 6.8 63 52-116 2-69 (713)
18 TIGR00003 copper ion binding p 96.6 0.014 3.1E-07 39.5 7.5 59 53-112 3-65 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.6 0.049 1.1E-06 58.7 8.8 63 153-217 53-118 (741)
20 PRK11033 zntA zinc/cadmium/mer 94.5 0.1 2.2E-06 56.2 7.6 64 50-114 51-116 (741)
21 TIGR02052 MerP mercuric transp 88.6 4.9 0.00011 29.7 8.8 62 155-217 25-90 (92)
22 cd00371 HMA Heavy-metal-associ 83.3 7.6 0.00017 23.3 7.1 49 160-208 6-56 (63)
23 TIGR02052 MerP mercuric transp 78.9 14 0.00031 27.0 7.6 42 53-94 24-66 (92)
24 PRK13748 putative mercuric red 74.7 13 0.00028 38.4 8.3 64 156-220 3-69 (561)
25 COG1888 Uncharacterized protei 74.4 24 0.00051 28.2 7.6 66 153-219 6-80 (97)
26 COG2177 FtsX Cell division pro 72.1 20 0.00043 34.6 8.3 90 54-186 63-152 (297)
27 PRK11023 outer membrane lipopr 66.8 82 0.0018 28.1 10.7 110 60-203 45-167 (191)
28 PF02680 DUF211: Uncharacteriz 62.6 31 0.00067 27.7 6.2 61 51-112 4-72 (95)
29 PF02680 DUF211: Uncharacteriz 61.9 20 0.00043 28.8 5.0 65 152-218 4-77 (95)
30 COG1888 Uncharacterized protei 60.5 36 0.00078 27.1 6.1 62 50-112 4-74 (97)
31 COG0841 AcrB Cation/multidrug 59.8 93 0.002 35.2 11.5 121 66-208 63-207 (1009)
32 PF01883 DUF59: Domain of unkn 58.6 18 0.00038 26.7 4.1 32 53-84 35-72 (72)
33 PF01883 DUF59: Domain of unkn 56.4 18 0.00038 26.7 3.7 31 155-185 36-72 (72)
34 PF10986 DUF2796: Protein of u 52.4 31 0.00066 30.5 5.2 38 54-91 115-155 (168)
35 PF01206 TusA: Sulfurtransfera 52.1 33 0.00072 25.0 4.7 53 156-218 2-57 (70)
36 cd00371 HMA Heavy-metal-associ 51.1 49 0.0011 19.3 6.7 37 58-94 4-41 (63)
37 PF14437 MafB19-deam: MafB19-l 50.8 36 0.00079 29.5 5.2 42 51-93 99-142 (146)
38 PRK13748 putative mercuric red 49.5 53 0.0011 33.9 7.2 40 55-94 3-43 (561)
39 PRK10555 aminoglycoside/multid 47.1 1.8E+02 0.0038 33.0 11.3 42 167-208 159-208 (1037)
40 PRK06418 transcription elongat 46.4 87 0.0019 27.7 7.0 70 154-223 7-101 (166)
41 PRK09577 multidrug efflux prot 42.8 2.4E+02 0.0051 32.0 11.5 42 167-208 158-207 (1032)
42 PRK14054 methionine sulfoxide 41.6 48 0.001 29.4 4.7 45 164-208 10-76 (172)
43 PRK15127 multidrug efflux syst 39.6 2.4E+02 0.0053 31.9 11.0 41 168-208 160-208 (1049)
44 PF14437 MafB19-deam: MafB19-l 39.2 66 0.0014 27.9 5.0 41 153-194 100-142 (146)
45 PF05663 DUF809: Protein of un 38.8 78 0.0017 25.6 5.0 45 163-208 46-90 (138)
46 PRK10553 assembly protein for 36.6 1.1E+02 0.0025 24.0 5.6 44 165-208 17-61 (87)
47 KOG1924 RhoA GTPase effector D 36.4 72 0.0016 34.9 5.7 13 165-177 423-435 (1102)
48 PRK09579 multidrug efflux prot 36.3 2.9E+02 0.0062 31.3 10.8 125 67-209 65-209 (1017)
49 PRK10503 multidrug efflux syst 36.1 2E+02 0.0043 32.6 9.6 41 168-208 169-218 (1040)
50 PRK11018 hypothetical protein; 35.7 1.6E+02 0.0034 22.3 6.2 56 155-218 9-65 (78)
51 PRK10614 multidrug efflux syst 35.2 3.2E+02 0.0069 30.9 11.0 43 167-209 159-210 (1025)
52 PF00873 ACR_tran: AcrB/AcrD/A 35.0 1E+02 0.0022 34.6 7.1 125 67-209 63-209 (1021)
53 cd03421 SirA_like_N SirA_like_ 32.8 1.3E+02 0.0028 21.7 5.2 51 157-218 2-55 (67)
54 PF04972 BON: BON domain; Int 31.7 39 0.00084 24.0 2.1 32 168-200 2-36 (64)
55 PRK11026 ftsX cell division AB 31.3 4.3E+02 0.0093 25.4 9.9 84 63-187 78-165 (309)
56 cd00652 TBP_TLF TATA box bindi 30.9 3.5E+02 0.0075 23.9 8.5 50 159-208 102-166 (174)
57 cd04888 ACT_PheB-BS C-terminal 30.9 1E+02 0.0022 22.2 4.4 32 154-185 42-74 (76)
58 cd04888 ACT_PheB-BS C-terminal 27.3 1.6E+02 0.0035 21.1 4.9 33 52-84 41-74 (76)
59 TIGR03406 FeS_long_SufT probab 25.7 1.4E+02 0.003 26.6 4.9 48 54-106 115-168 (174)
60 PF13732 DUF4162: Domain of un 24.5 1.7E+02 0.0038 21.7 4.8 41 174-216 26-67 (84)
61 PF09580 Spore_YhcN_YlaJ: Spor 24.2 1.7E+02 0.0037 25.3 5.3 34 162-195 72-105 (177)
62 PRK00058 methionine sulfoxide 24.2 1.3E+02 0.0028 27.7 4.6 45 164-208 52-118 (213)
63 TIGR00439 ftsX putative protei 24.1 5.6E+02 0.012 24.6 9.3 93 54-185 68-163 (309)
64 PRK13014 methionine sulfoxide 24.0 1E+02 0.0022 27.8 3.8 45 164-208 15-81 (186)
65 PF09122 DUF1930: Domain of un 23.9 91 0.002 23.2 2.8 45 50-94 17-62 (68)
66 TIGR02945 SUF_assoc FeS assemb 23.5 92 0.002 24.4 3.1 21 168-188 58-78 (99)
67 PF14492 EFG_II: Elongation Fa 23.4 3.2E+02 0.0069 20.3 6.3 54 164-217 15-73 (75)
68 TIGR03406 FeS_long_SufT probab 21.9 1E+02 0.0022 27.4 3.4 20 168-187 134-153 (174)
69 cd04518 TBP_archaea archaeal T 21.9 4.4E+02 0.0095 23.3 7.4 24 185-208 142-165 (174)
70 PF03927 NapD: NapD protein; 21.8 3.5E+02 0.0076 20.5 6.0 43 165-208 15-58 (79)
71 TIGR02945 SUF_assoc FeS assemb 21.7 1.2E+02 0.0025 23.7 3.4 35 52-86 39-77 (99)
72 PF13291 ACT_4: ACT domain; PD 21.1 2.6E+02 0.0056 20.5 5.1 35 49-83 45-79 (80)
73 PRK05528 methionine sulfoxide 21.0 69 0.0015 28.0 2.1 45 164-208 8-69 (156)
74 PF15023 DUF4523: Protein of u 20.4 3E+02 0.0064 24.1 5.7 61 147-208 81-146 (166)
75 PRK10553 assembly protein for 20.2 2.8E+02 0.006 21.8 5.2 44 64-107 17-61 (87)
No 1
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.35 E-value=1.8e-11 Score=131.91 Aligned_cols=160 Identities=16% Similarity=0.338 Sum_probs=115.8
Q ss_pred eEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhhhhcccccccccCCCCCCCCCCCCC
Q 020014 52 VTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKLDKKTKKKIDLISPQPKKDNKDKEP 130 (332)
Q Consensus 52 ~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~velis~~p~~~~~~~e~ 130 (332)
++++|.|. |+|++|+.+|+++|++++||..+.+++. +++|.+..++..+...++ .+||.+.+.++...........
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~~~~~~~~~~~~~ 79 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSHPKAKPLTESSIP 79 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccccccccccccccC
Confidence 56899998 9999999999999999999999999994 556666678889999999 9999988754211100000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeEEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEecCCHHHHHHHHHH
Q 020014 131 KQDNKPKDNKSPDDKKPKEPPVMTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKE 209 (332)
Q Consensus 131 ~~~~kk~~~~~~~~~k~~~~~~~~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~d~~~L~~~L~k 209 (332)
.+.........+.. ......++.|.| +|+|..|+..|++.|..++||.++.+++.++++.|.+..++..+...+.
T Consensus 80 ~~~~~~~~~~~~~~---~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~- 155 (834)
T PRK10671 80 SEALTAASEELPAA---TADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE- 155 (834)
T ss_pred chhhhhhhhhcccc---ccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-
Confidence 00000000000000 001123567889 9999999999999999999999999999999988876678888888888
Q ss_pred cCCCceEEc
Q 020014 210 RLKRPVEIV 218 (332)
Q Consensus 210 k~G~~a~vv 218 (332)
.+||.+.+.
T Consensus 156 ~~Gy~a~~~ 164 (834)
T PRK10671 156 KAGYGAEAI 164 (834)
T ss_pred hcCCCcccc
Confidence 799886543
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.23 E-value=3.5e-11 Score=88.18 Aligned_cols=58 Identities=29% Similarity=0.519 Sum_probs=53.5
Q ss_pred EEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEec---CCHHHHHHHHHHcCCCc
Q 020014 156 VLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGT---MDAKALAEVLKERLKRP 214 (332)
Q Consensus 156 ~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~---~d~~~L~~~L~kk~G~~ 214 (332)
+|.| +|+|++|+.+|+++|.+++||.++.+|+.+++|+|.+. ++++.|.+.|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 4789 99999999999999999999999999999999999976 45699999999 89984
No 3
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.9e-10 Score=118.81 Aligned_cols=157 Identities=23% Similarity=0.374 Sum_probs=130.2
Q ss_pred hcchhhhcccccCCCCceEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeee---cCchhhHhhhhhcc
Q 020014 35 EEGDAVAEKKKDDKKSSVTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGA---VDPSKIREKLDKKT 110 (332)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~---~dp~~l~~~i~~k~ 110 (332)
+..|--+.-...++.+..+..|+|. |+|.+|++.|++.|+.+.||+++.+.+...+..|..+ ..+..+++.++ .+
T Consensus 52 ed~gf~~~~~~~~~~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~ 130 (951)
T KOG0207|consen 52 EDMGFEASLLSDSEITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DL 130 (951)
T ss_pred hcccceeeecccCccccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hc
Confidence 3445555555666666667889998 9999999999999999999999999999999999853 67888999999 89
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEee-cccchhhHHHHHHHHhcCCCceeEEeecCC
Q 020014 111 KKKIDLISPQPKKDNKDKEPKQDNKPKDNKSPDDKKPKEPPVMTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQK 189 (332)
Q Consensus 111 G~~velis~~p~~~~~~~e~~~~~kk~~~~~~~~~k~~~~~~~~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~ 189 (332)
||.+.++..... .+ ..++.|.| ||.|++|+.+|++.|.+++||.++++++.+
T Consensus 131 gf~a~~i~~~~~--------------------------~~-~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t 183 (951)
T KOG0207|consen 131 GFSAELIESVNG--------------------------NS-NQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLAT 183 (951)
T ss_pred CccceehhcccC--------------------------CC-CCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccC
Confidence 988877653210 00 14568999 999999999999999999999999999999
Q ss_pred CEEEEEe---cCCHHHHHHHHHHcCCCceEEcCC
Q 020014 190 DTVTVKG---TMDAKALAEVLKERLKRPVEIVPP 220 (332)
Q Consensus 190 ~~vtV~g---~~d~~~L~~~L~kk~G~~a~vv~~ 220 (332)
+++.|.. ...+..+++.|. .+|+.+.+.+.
T Consensus 184 ~~~~V~~~~~~~~pr~i~k~ie-~~~~~~~~~~~ 216 (951)
T KOG0207|consen 184 DTAIVVYDPEITGPRDIIKAIE-ETGFEASVRPY 216 (951)
T ss_pred CceEEEecccccChHHHHHHHH-hhcccceeeec
Confidence 9999974 378899999999 88988877654
No 4
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.09 E-value=6.1e-10 Score=84.93 Aligned_cols=66 Identities=39% Similarity=0.665 Sum_probs=59.9
Q ss_pred ceeEEEeecccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEecCCHHHHHHHHHHcCC-CceEEc
Q 020014 152 VMTAVLKLGLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKERLK-RPVEIV 218 (332)
Q Consensus 152 ~~~~~lkVgm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~d~~~L~~~L~kk~G-~~a~vv 218 (332)
..+.+++|.|+|.+|+.+|.+.|+.+.||.++.+|...++|||.|.+++..|+..|++ .+ .++.++
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k-~~~k~~~~~ 70 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKK-TGGKRAELW 70 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHh-cCCCceEEe
Confidence 3456888999999999999999999999999999999999999999999999999995 55 776665
No 5
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.09 E-value=3.9e-10 Score=82.60 Aligned_cols=58 Identities=31% Similarity=0.540 Sum_probs=52.2
Q ss_pred EEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeec---CchhhHhhhhhccccc
Q 020014 55 ILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAV---DPSKIREKLDKKTKKK 113 (332)
Q Consensus 55 ~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~---dp~~l~~~i~~k~G~~ 113 (332)
+|+|. |+|++|+.+|+++|.+++||.++.+|+.+++++|.+.. ++.+|.++|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 57897 99999999999999999999999999999999999863 4588999999 78873
No 6
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.4e-09 Score=112.96 Aligned_cols=133 Identities=20% Similarity=0.388 Sum_probs=116.3
Q ss_pred ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeee--cCchhhHhhhhhcccccccccCCCCCCCCCCCCCCCCCCCC
Q 020014 60 MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGA--VDPSKIREKLDKKTKKKIDLISPQPKKDNKDKEPKQDNKPK 137 (332)
Q Consensus 60 M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~--~dp~~l~~~i~~k~G~~velis~~p~~~~~~~e~~~~~kk~ 137 (332)
|+|..|...|+.++++.+||.++.+++..++++|..+ ++++.|.++|+ .+||...+++...
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ie-d~gf~~~~~~~~~---------------- 65 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIE-DMGFEASLLSDSE---------------- 65 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhh-cccceeeecccCc----------------
Confidence 9999999999999999999999999999999999864 78899999999 9999888765421
Q ss_pred CCCCCCCCCCCCCCceeEEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEe---cCCHHHHHHHHHHcCCC
Q 020014 138 DNKSPDDKKPKEPPVMTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKG---TMDAKALAEVLKERLKR 213 (332)
Q Consensus 138 ~~~~~~~~k~~~~~~~~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g---~~d~~~L~~~L~kk~G~ 213 (332)
.+..+..|.| ||+|.+|++.|++.|+++.||.++.+.+......|.- ...++.+++.+. ++|+
T Consensus 66 ------------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf 132 (951)
T KOG0207|consen 66 ------------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGF 132 (951)
T ss_pred ------------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCc
Confidence 1223568999 9999999999999999999999999999999999863 378899999999 8999
Q ss_pred ceEEcCCCC
Q 020014 214 PVEIVPPKK 222 (332)
Q Consensus 214 ~a~vv~~~k 222 (332)
.+.++....
T Consensus 133 ~a~~i~~~~ 141 (951)
T KOG0207|consen 133 SAELIESVN 141 (951)
T ss_pred cceehhccc
Confidence 998775543
No 7
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.95 E-value=2.3e-09 Score=81.80 Aligned_cols=66 Identities=44% Similarity=0.773 Sum_probs=58.5
Q ss_pred CceEEEEEEeecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhhhhccccccc
Q 020014 50 SSVTVILKVDMHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKLDKKTKKKID 115 (332)
Q Consensus 50 ~~~~v~lkV~M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~ve 115 (332)
..+..++++.|+|.+|+.+|++.|..+.||.++.+|...++++|.|.++|..|+..|.+..++...
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~ 68 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAE 68 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceE
Confidence 456788999999999999999999999999999999999999999999999999999953324443
No 8
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.8e-09 Score=79.64 Aligned_cols=64 Identities=28% Similarity=0.521 Sum_probs=57.0
Q ss_pred eEEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEE--e-cCCHHHHHHHHHHcCCCceEEc
Q 020014 154 TAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVK--G-TMDAKALAEVLKERLKRPVEIV 218 (332)
Q Consensus 154 ~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~--g-~~d~~~L~~~L~kk~G~~a~vv 218 (332)
...|+| +|+|.+|+..|+++|.+++||.++.+|+..++++|. + .++.+.|+..|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 457999 999999999999999999999999999999777665 4 489999999999 899988754
No 9
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.88 E-value=6.3e-09 Score=78.96 Aligned_cols=64 Identities=23% Similarity=0.432 Sum_probs=56.0
Q ss_pred eEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEee---ecCchhhHhhhhhcccccccc
Q 020014 52 VTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVG---AVDPSKIREKLDKKTKKKIDL 116 (332)
Q Consensus 52 ~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g---~~dp~~l~~~i~~k~G~~vel 116 (332)
.++.|.|. |+|.+|+.+|+++|..++||.+|.+++..+++.|.. .++.++|.++|+ .+||.+..
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~ 69 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEE 69 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeee
Confidence 45789998 999999999999999999999999999997777764 368899999999 88987654
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.6e-07 Score=84.10 Aligned_cols=70 Identities=21% Similarity=0.455 Sum_probs=65.1
Q ss_pred CceEEEEEEeecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhhhhcccccccccCCC
Q 020014 50 SSVTVILKVDMHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKLDKKTKKKIDLISPQ 120 (332)
Q Consensus 50 ~~~~v~lkV~M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~velis~~ 120 (332)
...++.|.|+|+|++|+..|+.+|..++||.+|.+|+..+.|.|.+.+.+..|...|+ .+|+++.|+...
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G 74 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAG 74 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCC
Confidence 4567899999999999999999999999999999999999999999999999999999 999999887764
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.51 E-value=3.1e-07 Score=82.33 Aligned_cols=68 Identities=13% Similarity=0.338 Sum_probs=63.4
Q ss_pred ceeEEEeecccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEecCCHHHHHHHHHHcCCCceEEcCC
Q 020014 152 VMTAVLKLGLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKERLKRPVEIVPP 220 (332)
Q Consensus 152 ~~~~~lkVgm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~d~~~L~~~L~kk~G~~a~vv~~ 220 (332)
.-++.|.|.|+|++|+..|+..|..++||.+|+||+..+.|.|.+.+.+..|...|+ .+|++|.+..-
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~ 73 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGA 73 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecC
Confidence 346689999999999999999999999999999999999999999999999999999 99999998744
No 12
>PLN02957 copper, zinc superoxide dismutase
Probab=97.94 E-value=5.4e-05 Score=70.46 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=60.9
Q ss_pred eEEEeecccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEecCCHHHHHHHHHHcCCCceEEcCCCC
Q 020014 154 TAVLKLGLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKERLKRPVEIVPPKK 222 (332)
Q Consensus 154 ~~~lkVgm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~d~~~L~~~L~kk~G~~a~vv~~~k 222 (332)
++.|.|+|+|..|+.+|++.|..++||.++.+++...+++|...++...|+..|. ++||.++++....
T Consensus 7 ~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~ 74 (238)
T PLN02957 7 LTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGD 74 (238)
T ss_pred EEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCC
Confidence 4567789999999999999999999999999999999999988788899999999 8999998876543
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.76 E-value=6.4e-05 Score=81.56 Aligned_cols=63 Identities=25% Similarity=0.429 Sum_probs=56.8
Q ss_pred eEEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEecCCHHHHHHHHHHcCCCceEEcC
Q 020014 154 TAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKERLKRPVEIVP 219 (332)
Q Consensus 154 ~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~d~~~L~~~L~kk~G~~a~vv~ 219 (332)
+++|.| +|+|++|+.+|+++|.+++||.++.+++. +.+|.+..+++.|...+. ++||.+.++.
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 568999 99999999999999999999999999994 556667789999999999 9999998864
No 14
>PLN02957 copper, zinc superoxide dismutase
Probab=97.63 E-value=0.00021 Score=66.48 Aligned_cols=69 Identities=26% Similarity=0.529 Sum_probs=59.7
Q ss_pred CceEEEEEEeecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhhhhcccccccccCC
Q 020014 50 SSVTVILKVDMHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKLDKKTKKKIDLISP 119 (332)
Q Consensus 50 ~~~~v~lkV~M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~velis~ 119 (332)
+.+++.|.+.|+|..|+.+|+.+|..++||..+.+++..++++|.+..++..+...|+ .+||.+++++.
T Consensus 4 ~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~ 72 (238)
T PLN02957 4 PELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQ 72 (238)
T ss_pred CcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecC
Confidence 3456778888999999999999999999999999999999999987667778888888 88988876654
No 15
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.0002 Score=76.10 Aligned_cols=62 Identities=18% Similarity=0.402 Sum_probs=55.5
Q ss_pred eEEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEec---CC-HHHHHHHHHHcCCCceEE
Q 020014 154 TAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGT---MD-AKALAEVLKERLKRPVEI 217 (332)
Q Consensus 154 ~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~---~d-~~~L~~~L~kk~G~~a~v 217 (332)
+..|.| ||+|++|+++|+ +|.+++||..+.+|+.+.+++|..+ .+ ++.+...++ .+||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 347899 999999999999 9999999999999999999999743 45 788999999 89998876
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.28 E-value=0.0022 Score=43.71 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=49.9
Q ss_pred EEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEe---cCCHHHHHHHHHHcCCCce
Q 020014 155 AVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKG---TMDAKALAEVLKERLKRPV 215 (332)
Q Consensus 155 ~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g---~~d~~~L~~~L~kk~G~~a 215 (332)
..+.| +|.|..|+..|++.+..+.++..+.+++....+.|.. ..+...+...+. ..|+.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 46889 9999999999999999999999999999999888863 356777777776 667643
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0016 Score=69.42 Aligned_cols=63 Identities=30% Similarity=0.515 Sum_probs=53.8
Q ss_pred eEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeee---cC-chhhHhhhhhcccccccc
Q 020014 52 VTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGA---VD-PSKIREKLDKKTKKKIDL 116 (332)
Q Consensus 52 ~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~---~d-p~~l~~~i~~k~G~~vel 116 (332)
.++.|.|. |+|+.|+.+|+ +|.+++||..+.+++.+.+++|..+ .+ ++.+...++ ..||....
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 35688998 99999999999 9999999999999999999999854 34 567788888 78886643
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.61 E-value=0.014 Score=39.55 Aligned_cols=59 Identities=20% Similarity=0.370 Sum_probs=45.6
Q ss_pred EEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeee---cCchhhHhhhhhcccc
Q 020014 53 TVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGA---VDPSKIREKLDKKTKK 112 (332)
Q Consensus 53 ~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~---~dp~~l~~~i~~k~G~ 112 (332)
++.+.|. |+|..|+..|+..+....++..+.+++....+.|... .+...+...+. ..|+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 65 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGY 65 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCC
Confidence 4568898 9999999999999999999999999999999888742 24444444444 4443
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.56 E-value=0.049 Score=58.70 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=51.6
Q ss_pred eeEEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEec--CCHHHHHHHHHHcCCCceEE
Q 020014 153 MTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGT--MDAKALAEVLKERLKRPVEI 217 (332)
Q Consensus 153 ~~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~--~d~~~L~~~L~kk~G~~a~v 217 (332)
.+..|.| +|+|.+|+.+|++.+..++||.++.+++.+.++.|... .+ ..+...+. .+||.+..
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~-~~I~~aI~-~~Gy~a~~ 118 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIR-AQVESAVQ-KAGFSLRD 118 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccch-HHHHHHHH-hccccccc
Confidence 3557889 99999999999999999999999999999998887632 23 56667777 78887653
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.51 E-value=0.1 Score=56.22 Aligned_cols=64 Identities=25% Similarity=0.426 Sum_probs=49.5
Q ss_pred CceEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecC-chhhHhhhhhcccccc
Q 020014 50 SSVTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVD-PSKIREKLDKKTKKKI 114 (332)
Q Consensus 50 ~~~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~d-p~~l~~~i~~k~G~~v 114 (332)
...++.+.|. |+|.+|+..|+..|..++||..+.+++.+.++.|....+ ...+...++ .+||.+
T Consensus 51 ~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a 116 (741)
T PRK11033 51 SGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSL 116 (741)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hccccc
Confidence 4556788898 999999999999999999999999999999988874211 134445555 566654
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=88.64 E-value=4.9 Score=29.67 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=46.8
Q ss_pred EEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEe---cCCHHHHHHHHHHcCCCceEE
Q 020014 155 AVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKG---TMDAKALAEVLKERLKRPVEI 217 (332)
Q Consensus 155 ~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g---~~d~~~L~~~L~kk~G~~a~v 217 (332)
+.+.+ ++.|..|...+...+....++....+++....+.+.. ..+...+...+. ..|+.+++
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 90 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSSL 90 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEe
Confidence 35667 9999999999999999999999888888777766542 245666656665 67776554
No 22
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=83.28 E-value=7.6 Score=23.27 Aligned_cols=49 Identities=31% Similarity=0.571 Sum_probs=35.9
Q ss_pred cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEec--CCHHHHHHHHH
Q 020014 160 GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGT--MDAKALAEVLK 208 (332)
Q Consensus 160 gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~--~d~~~L~~~L~ 208 (332)
++.|..|...+...+....++....+++....+.+... .+...+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE 56 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH
Confidence 78999999999999999999888888877766666532 35555444444
No 23
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=78.95 E-value=14 Score=27.02 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=34.1
Q ss_pred EEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEe
Q 020014 53 TVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIV 94 (332)
Q Consensus 53 ~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~ 94 (332)
++.+.+. +.|..|...+...+....++....+.+...++.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 3456677 99999999999999999998888888777775554
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=74.66 E-value=13 Score=38.36 Aligned_cols=64 Identities=19% Similarity=0.371 Sum_probs=49.7
Q ss_pred EEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEe--cCCHHHHHHHHHHcCCCceEEcCC
Q 020014 156 VLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKG--TMDAKALAEVLKERLKRPVEIVPP 220 (332)
Q Consensus 156 ~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g--~~d~~~L~~~L~kk~G~~a~vv~~ 220 (332)
.+.+ +|+|..|..+++..+..++++....+++....+.+.. ..+...+...+. ..++.+.+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence 3567 9999999999999999999999999999888877753 245666666666 67777655544
No 25
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.39 E-value=24 Score=28.16 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=44.4
Q ss_pred eeEEEee-cccchhhHHHHHHHHhcCCCceeEEeec-----C--CCEEEEEec-CCHHHHHHHHHHcCCCceEEcC
Q 020014 153 MTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDK-----Q--KDTVTVKGT-MDAKALAEVLKERLKRPVEIVP 219 (332)
Q Consensus 153 ~~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~-----~--~~~vtV~g~-~d~~~L~~~L~kk~G~~a~vv~ 219 (332)
..++|.| --+-.--.--+-+.|+++.||.-|.+.+ . +=++||.|. +|-++|...|. .+|-.+..+.
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSiD 80 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSID 80 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeehh
Confidence 4556666 3332333445557789999988776543 2 334566674 99999999999 8898877663
No 26
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=72.08 E-value=20 Score=34.59 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=60.8
Q ss_pred EEEEEeecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhhhhcccccccccCCCCCCCCCCCCCCCC
Q 020014 54 VILKVDMHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKLDKKTKKKIDLISPQPKKDNKDKEPKQD 133 (332)
Q Consensus 54 v~lkV~M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~velis~~p~~~~~~~e~~~~ 133 (332)
+.|.++.+ ..|+..|+..|..++||.++++ .+.++-++.+++.+|+. ....-.
T Consensus 63 vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~-~~~~l~------------- 115 (297)
T COG2177 63 VYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFG-ALLMLD------------- 115 (297)
T ss_pred EEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCch-hhhcCC-------------
Confidence 44444444 8899999999999999998887 46777788777677754 111000
Q ss_pred CCCCCCCCCCCCCCCCCCceeEEEeecccchhhHHHHHHHHhcCCCceeEEee
Q 020014 134 NKPKDNKSPDDKKPKEPPVMTAVLKLGLHCQGCIEKILKIVSKTKGVMDKSID 186 (332)
Q Consensus 134 ~kk~~~~~~~~~k~~~~~~~~~~lkVgm~C~~Ca~kIek~L~kl~GV~sv~vd 186 (332)
..+-.. .+.|...-+.-..-|.+.|..++||.+|.-+
T Consensus 116 --------------~nPLP~--~~vV~~~~p~~~~~i~~~l~~l~gV~~V~~~ 152 (297)
T COG2177 116 --------------ENPLPD--VFVVTPDDPPQVKAIAAALRDLPGVAEVDDD 152 (297)
T ss_pred --------------CCCCCc--eEEEEeCCCccHHHHHHHHHcCccceehhcc
Confidence 001112 2344334477888999999999999987754
No 27
>PRK11023 outer membrane lipoprotein; Provisional
Probab=66.80 E-value=82 Score=28.14 Aligned_cols=110 Identities=8% Similarity=0.115 Sum_probs=69.1
Q ss_pred ecChhHHHHHHHHHhcCCCcc---EEEEeccCceEEEeeecCchhhHhhhhhcccccccccCCCCCCCCCCCCCCCCCCC
Q 020014 60 MHCEGCANKIVRYARSFEGVE---AVKAEVAANKITIVGAVDPSKIREKLDKKTKKKIDLISPQPKKDNKDKEPKQDNKP 136 (332)
Q Consensus 60 M~C~~Ca~kIe~aL~~l~GV~---~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~velis~~p~~~~~~~e~~~~~kk 136 (332)
+....=+.+|..+|..-+.+. .+.+....+.|++.|.++-+.......+.+ ..+.-+..
T Consensus 45 ~dD~~i~~~V~~aL~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~~~k~~A~~ia-~~v~GV~~----------------- 106 (191)
T PRK11023 45 VDDGTLELRVNNALSKDEQIKKEARINVTAYQGKVLLTGQSPNAELSERAKQIA-MGVEGVNE----------------- 106 (191)
T ss_pred ehhHHHHHHHHHHHhhCcccCcCceEEEEEECCEEEEEEEeCCHHHHHHHHHHH-hcCCCcee-----------------
Confidence 344556678888988766663 588888999999999877665555444121 11111100
Q ss_pred CCCCCCCCCCCCCCCceeEEEee--------cccchhhHHHHHHHHhcCCCceeEEe--ecCCCEEEEEecCCHHHH
Q 020014 137 KDNKSPDDKKPKEPPVMTAVLKL--------GLHCQGCIEKILKIVSKTKGVMDKSI--DKQKDTVTVKGTMDAKAL 203 (332)
Q Consensus 137 ~~~~~~~~~k~~~~~~~~~~lkV--------gm~C~~Ca~kIek~L~kl~GV~sv~v--d~~~~~vtV~g~~d~~~L 203 (332)
+ .-.|.| .+....=..+|+.+|...+.|....| ...++.|++.|.++..+.
T Consensus 107 ---------------V-~N~l~V~~~~~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~~e~ 167 (191)
T PRK11023 107 ---------------V-YNEIRQGQPIGLGTASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQREA 167 (191)
T ss_pred ---------------e-cceeeeccccccccccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCHHHH
Confidence 0 001222 22334467789999988888775544 447999999998876543
No 28
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=62.62 E-value=31 Score=27.71 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=40.6
Q ss_pred ceEEEEEEeecChhHHHHHHHHHhcCCCccEEEEe-----ccC--ceEEEeee-cCchhhHhhhhhcccc
Q 020014 51 SVTVILKVDMHCEGCANKIVRYARSFEGVEAVKAE-----VAA--NKITIVGA-VDPSKIREKLDKKTKK 112 (332)
Q Consensus 51 ~~~v~lkV~M~C~~Ca~kIe~aL~~l~GV~~V~vd-----~~s--~kvtV~g~-~dp~~l~~~i~~k~G~ 112 (332)
.++++|-|..--.--.-.+...|..++||..|.+. ..+ -+++|.|. +|.+.|.++|+ .+|-
T Consensus 4 irRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg 72 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGG 72 (95)
T ss_dssp EEEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-
T ss_pred eeEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCC
Confidence 45677777633333445788899999999987764 333 34445574 89999999999 6653
No 29
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=61.95 E-value=20 Score=28.77 Aligned_cols=65 Identities=22% Similarity=0.373 Sum_probs=42.9
Q ss_pred ceeEEEee-cccchhhHHHHHHHHhcCCCceeEEeec-----CCC--EEEEEec-CCHHHHHHHHHHcCCCceEEc
Q 020014 152 VMTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDK-----QKD--TVTVKGT-MDAKALAEVLKERLKRPVEIV 218 (332)
Q Consensus 152 ~~~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~-----~~~--~vtV~g~-~d~~~L~~~L~kk~G~~a~vv 218 (332)
..+++|-| --|-++ .-.+-+.|++++||..|.+.+ .+. +++|.|. +|.+.|.+.|. ++|-.+..+
T Consensus 4 irRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSI 77 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEE
T ss_pred eeEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEee
Confidence 34566666 224443 445668899999999887655 222 3445675 99999999999 899776654
No 30
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.54 E-value=36 Score=27.14 Aligned_cols=62 Identities=26% Similarity=0.276 Sum_probs=41.6
Q ss_pred CceEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEe-------ccCceEEEee-ecCchhhHhhhhhcccc
Q 020014 50 SSVTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAE-------VAANKITIVG-AVDPSKIREKLDKKTKK 112 (332)
Q Consensus 50 ~~~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd-------~~s~kvtV~g-~~dp~~l~~~i~~k~G~ 112 (332)
..++++|-|. -+-+--.--+...|++++||+.|.+. ...-++||.| .+|...|.+.|+ ..|.
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg 74 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGG 74 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCC
Confidence 3455666665 33233444667788999999877653 3444566667 489999999999 6664
No 31
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=59.84 E-value=93 Score=35.20 Aligned_cols=121 Identities=12% Similarity=0.200 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCCccEEEEeccCceEEEe--ee--cCch----hhHhhhhhcccccccccCCCCCCCCCCCCCCCCCCCC
Q 020014 66 ANKIVRYARSFEGVEAVKAEVAANKITIV--GA--VDPS----KIREKLDKKTKKKIDLISPQPKKDNKDKEPKQDNKPK 137 (332)
Q Consensus 66 a~kIe~aL~~l~GV~~V~vd~~s~kvtV~--g~--~dp~----~l~~~i~~k~G~~velis~~p~~~~~~~e~~~~~kk~ 137 (332)
...|+++|..++|+..++-....+..+|+ .. .|++ ++.++|. .+ . +..|.. .
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~-~~----~--~~LP~~-~------------ 122 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQ-QA----E--SRLPSG-V------------ 122 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHHHHHHHHHHH-HH----H--hcCCCc-c------------
Confidence 46799999999999988766555665554 32 4555 4445554 11 1 011110 0
Q ss_pred CCCCCCCCCCCCCCceeEEEee-c--cc----chhhHHHHHHHHhcCCCceeEEeecC-CCEEEEEe--------cCCHH
Q 020014 138 DNKSPDDKKPKEPPVMTAVLKL-G--LH----CQGCIEKILKIVSKTKGVMDKSIDKQ-KDTVTVKG--------TMDAK 201 (332)
Q Consensus 138 ~~~~~~~~k~~~~~~~~~~lkV-g--m~----C~~Ca~kIek~L~kl~GV~sv~vd~~-~~~vtV~g--------~~d~~ 201 (332)
..+--.+...+..-.+.+.+ . +. -..-...|+..|++++||.+|++-.. ...+.|.- .+.+.
T Consensus 123 --~~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~ 200 (1009)
T COG0841 123 --QQPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPS 200 (1009)
T ss_pred --CCCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHH
Confidence 00000000011122234444 2 32 12335569999999999999999885 55666741 26677
Q ss_pred HHHHHHH
Q 020014 202 ALAEVLK 208 (332)
Q Consensus 202 ~L~~~L~ 208 (332)
+|...|+
T Consensus 201 dV~~ai~ 207 (1009)
T COG0841 201 DVQSAIR 207 (1009)
T ss_pred HHHHHHH
Confidence 7888887
No 32
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=58.55 E-value=18 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEEEeecChhHH------HHHHHHHhcCCCccEEEE
Q 020014 53 TVILKVDMHCEGCA------NKIVRYARSFEGVEAVKA 84 (332)
Q Consensus 53 ~v~lkV~M~C~~Ca------~kIe~aL~~l~GV~~V~v 84 (332)
++.|.+.+...+|. ..|+.+|+.++||.+|++
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 34555555555554 568999999999998875
No 33
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=56.36 E-value=18 Score=26.70 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=20.1
Q ss_pred EEEeecccchhh------HHHHHHHHhcCCCceeEEe
Q 020014 155 AVLKLGLHCQGC------IEKILKIVSKTKGVMDKSI 185 (332)
Q Consensus 155 ~~lkVgm~C~~C------a~kIek~L~kl~GV~sv~v 185 (332)
+.|.+.+..++| ...|+.+|..++||.+|+|
T Consensus 36 V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 36 VSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 345554454444 4668999999999999875
No 34
>PF10986 DUF2796: Protein of unknown function (DUF2796); InterPro: IPR021253 This bacterial family of proteins has no known function.
Probab=52.42 E-value=31 Score=30.53 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=23.8
Q ss_pred EEEEEeecChhHHH--HHH-HHHhcCCCccEEEEeccCceE
Q 020014 54 VILKVDMHCEGCAN--KIV-RYARSFEGVEAVKAEVAANKI 91 (332)
Q Consensus 54 v~lkV~M~C~~Ca~--kIe-~aL~~l~GV~~V~vd~~s~kv 91 (332)
+...-.++|..-.+ .|. ..+..+|+.+.|.|.+-+.+.
T Consensus 115 f~a~Y~f~C~~p~~L~~i~~~~F~~FP~~e~i~Vq~it~~g 155 (168)
T PF10986_consen 115 FHAEYTFHCANPAALSSIDTQLFKAFPGTEKIDVQWITPKG 155 (168)
T ss_pred EEEEEEEEcCCHHHhceehhhhHhhCCCccEEEEEEECCCC
Confidence 33333488988754 333 346678999999887644443
No 35
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=52.14 E-value=33 Score=24.97 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=36.9
Q ss_pred EEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEe--cCCHHHHHHHHHHcCCCceEEc
Q 020014 156 VLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKG--TMDAKALAEVLKERLKRPVEIV 218 (332)
Q Consensus 156 ~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g--~~d~~~L~~~L~kk~G~~a~vv 218 (332)
+|-+ |+.|+...-++.++|..++.= +.+.|.. ......|...+. ..|+.+..+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~-~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCE-ENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHH-HHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHH-HCCCEEEEE
Confidence 5677 999999999999999988432 3344433 344577888888 789875443
No 36
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=51.09 E-value=49 Score=19.34 Aligned_cols=37 Identities=35% Similarity=0.706 Sum_probs=28.4
Q ss_pred Ee-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEe
Q 020014 58 VD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIV 94 (332)
Q Consensus 58 V~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~ 94 (332)
+. +.|..|...+...+....++......+....+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 44 88999999999888888887766666666555554
No 37
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=50.80 E-value=36 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=33.5
Q ss_pred ceEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEecc-CceEEE
Q 020014 51 SVTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVA-ANKITI 93 (332)
Q Consensus 51 ~~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~-s~kvtV 93 (332)
...++|.|+ -.|..|..-|.....++ |+.++.|-.. ++++.+
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 457889998 99999998888887775 8998888776 665543
No 38
>PRK13748 putative mercuric reductase; Provisional
Probab=49.51 E-value=53 Score=33.90 Aligned_cols=40 Identities=20% Similarity=0.463 Sum_probs=34.3
Q ss_pred EEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEe
Q 020014 55 ILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIV 94 (332)
Q Consensus 55 ~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~ 94 (332)
.+.+. |+|..|...++..+..++++....+++....+.+.
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~ 43 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLA 43 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEE
Confidence 35576 99999999999999999999888888888876665
No 39
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=47.07 E-value=1.8e+02 Score=32.99 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCceeEEeecCCCEEEEEe--------cCCHHHHHHHHH
Q 020014 167 IEKILKIVSKTKGVMDKSIDKQKDTVTVKG--------TMDAKALAEVLK 208 (332)
Q Consensus 167 a~kIek~L~kl~GV~sv~vd~~~~~vtV~g--------~~d~~~L~~~L~ 208 (332)
+..|+..|.+++||.+|.+......+.|.- .+++.+|...|+
T Consensus 159 ~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~ 208 (1037)
T PRK10555 159 ASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIE 208 (1037)
T ss_pred HHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHH
Confidence 467999999999999999987655566641 266777888887
No 40
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=46.36 E-value=87 Score=27.70 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=45.1
Q ss_pred eEEEeecccchhhHHH------------HHHHHhcC------CCceeEEeecCCCEEEEE---ec---C-CHHHHHHHHH
Q 020014 154 TAVLKLGLHCQGCIEK------------ILKIVSKT------KGVMDKSIDKQKDTVTVK---GT---M-DAKALAEVLK 208 (332)
Q Consensus 154 ~~~lkVgm~C~~Ca~k------------Iek~L~kl------~GV~sv~vd~~~~~vtV~---g~---~-d~~~L~~~L~ 208 (332)
.+-++-|+-|+.|-++ |.++|.+| .++.-...=...++|.+. |+ + ..-..+++|+
T Consensus 7 ~~c~kt~ilC~~c~~~~~~G~v~~~dv~i~~~l~~l~~~~~l~~~~~~k~~~~ddrvIfvV~~gdg~aIGk~G~~ik~l~ 86 (166)
T PRK06418 7 EVCVKTGLLCPRCQSLLDSGEVTELDVEVSKVLLKLEEDKELKDVEYKKAYEVDDLVILLVTSGPRIPIGKGGKIAKALS 86 (166)
T ss_pred eEEeccCccChhHHhHhhcCceEEeehHHHHHHHHhhccccccCceEEEEEEeCCEEEEEEeCCCcccccccchHHHHHH
Confidence 3455669999999988 45677776 343333222235666542 33 1 1235788998
Q ss_pred HcCCCceEEcCCCCc
Q 020014 209 ERLKRPVEIVPPKKE 223 (332)
Q Consensus 209 kk~G~~a~vv~~~k~ 223 (332)
+.+|+++++|....+
T Consensus 87 ~~lgk~VevVE~s~d 101 (166)
T PRK06418 87 RKLGKKVRVVEKTND 101 (166)
T ss_pred HHhCCcEEEEEcCCC
Confidence 899999999976544
No 41
>PRK09577 multidrug efflux protein; Reviewed
Probab=42.78 E-value=2.4e+02 Score=31.96 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCceeEEeecCCCEEEEE--------ecCCHHHHHHHHH
Q 020014 167 IEKILKIVSKTKGVMDKSIDKQKDTVTVK--------GTMDAKALAEVLK 208 (332)
Q Consensus 167 a~kIek~L~kl~GV~sv~vd~~~~~vtV~--------g~~d~~~L~~~L~ 208 (332)
...|+..|.+++||.+|.+......+.|. -.++..+|...|+
T Consensus 158 ~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~ 207 (1032)
T PRK09577 158 SANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVR 207 (1032)
T ss_pred HHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHH
Confidence 46799999999999999998865556663 1266777888888
No 42
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=41.63 E-value=48 Score=29.45 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHhcCCCceeEEeecCCCE-------------------EEEEe---cCCHHHHHHHHH
Q 020014 164 QGCIEKILKIVSKTKGVMDKSIDKQKDT-------------------VTVKG---TMDAKALAEVLK 208 (332)
Q Consensus 164 ~~Ca~kIek~L~kl~GV~sv~vd~~~~~-------------------vtV~g---~~d~~~L~~~L~ 208 (332)
.+|-+-++..+.+++||.++.+-.+.+. |.|.- .++-+.|+..+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 4677788888999999999999887775 44542 367788888776
No 43
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=39.63 E-value=2.4e+02 Score=31.95 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCceeEEeecCCCEEEEEe--------cCCHHHHHHHHH
Q 020014 168 EKILKIVSKTKGVMDKSIDKQKDTVTVKG--------TMDAKALAEVLK 208 (332)
Q Consensus 168 ~kIek~L~kl~GV~sv~vd~~~~~vtV~g--------~~d~~~L~~~L~ 208 (332)
..|+..|.+++||.+|++......+.|.- .+++.+|...|+
T Consensus 160 ~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~ 208 (1049)
T PRK15127 160 ANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIK 208 (1049)
T ss_pred HHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHH
Confidence 56999999999999999987655566641 256666777777
No 44
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=39.18 E-value=66 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=32.2
Q ss_pred eeEEEee-cccchhhHHHHHHHHhcCCCceeEEeecC-CCEEEE
Q 020014 153 MTAVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQ-KDTVTV 194 (332)
Q Consensus 153 ~~~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~-~~~vtV 194 (332)
..++|.| .-.|..|..-|.....++ |+.+++|... ++++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 3567888 889999999998777766 9999999876 665543
No 45
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=38.78 E-value=78 Score=25.64 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHhcCCCceeEEeecCCCEEEEEecCCHHHHHHHHH
Q 020014 163 CQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLK 208 (332)
Q Consensus 163 C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~d~~~L~~~L~ 208 (332)
...|.+.+ +.|.+++=-......--.-++||++.+.-+++...+.
T Consensus 46 nqhclrtm-rhleklkipyefqygwlgvkitiksnvpndevtkkvs 90 (138)
T PF05663_consen 46 NQHCLRTM-RHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKVS 90 (138)
T ss_pred cHHHHHHH-HHHHhcCCCeeeeecceeEEEEEecCCCchHhhhccC
Confidence 45665544 5566665444444444555677777777777666544
No 46
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=36.62 E-value=1.1e+02 Score=23.97 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhcCCCceeEEeecCCCEEEEEe-cCCHHHHHHHHH
Q 020014 165 GCIEKILKIVSKTKGVMDKSIDKQKDTVTVKG-TMDAKALAEVLK 208 (332)
Q Consensus 165 ~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g-~~d~~~L~~~L~ 208 (332)
.-...+.+.|..++|+.-...|...+++.|+= .-+...+++.|.
T Consensus 17 e~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~ 61 (87)
T PRK10553 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHH
Confidence 34778899999999999888877788887762 234444444444
No 47
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.38 E-value=72 Score=34.94 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=6.2
Q ss_pred hhHHHHHHHHhcC
Q 020014 165 GCIEKILKIVSKT 177 (332)
Q Consensus 165 ~Ca~kIek~L~kl 177 (332)
....-|+..|+.+
T Consensus 423 qYykLIEecISqI 435 (1102)
T KOG1924|consen 423 QYYKLIEECISQI 435 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455555443
No 48
>PRK09579 multidrug efflux protein; Reviewed
Probab=36.33 E-value=2.9e+02 Score=31.28 Aligned_cols=125 Identities=13% Similarity=0.150 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCCccEEEEeccCceEEEe--ee--cCchhhHhhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020014 67 NKIVRYARSFEGVEAVKAEVAANKITIV--GA--VDPSKIREKLDKKTKKKIDLISPQPKKDNKDKEPKQDNKPKDNKSP 142 (332)
Q Consensus 67 ~kIe~aL~~l~GV~~V~vd~~s~kvtV~--g~--~dp~~l~~~i~~k~G~~velis~~p~~~~~~~e~~~~~kk~~~~~~ 142 (332)
..|+.+|+.++||+.+.-....+...|. .. .|.+..+..++.++.. + ...-|. +.. .|
T Consensus 65 ~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g~d~~~a~~~v~~~v~~-v--~~~LP~-~~~--------------~P 126 (1017)
T PRK09579 65 QPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANE-V--KNQLPQ-DAE--------------DP 126 (1017)
T ss_pred HHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCCCHHHHHHHHHHHHHH-H--HHhCCC-CCC--------------CC
Confidence 5699999999999999887777777664 22 3444444333322210 1 111121 000 00
Q ss_pred CCCCCCCCCceeEEEee-c--ccc----hhhHHHHHHHHhcCCCceeEEeecCCC-EEEEE--------ecCCHHHHHHH
Q 020014 143 DDKKPKEPPVMTAVLKL-G--LHC----QGCIEKILKIVSKTKGVMDKSIDKQKD-TVTVK--------GTMDAKALAEV 206 (332)
Q Consensus 143 ~~~k~~~~~~~~~~lkV-g--m~C----~~Ca~kIek~L~kl~GV~sv~vd~~~~-~vtV~--------g~~d~~~L~~~ 206 (332)
.-.+........+.+.+ + ++- .--...|+..|.+++||.+|.+..... .+.|. -.+...+|...
T Consensus 127 ~i~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~~a 206 (1017)
T PRK09579 127 VLSKEAADASALMYISFYSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQA 206 (1017)
T ss_pred eEEeCCCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHHHH
Confidence 00000000111123333 2 111 112356899999999999999876443 45553 12667778888
Q ss_pred HHH
Q 020014 207 LKE 209 (332)
Q Consensus 207 L~k 209 (332)
|+.
T Consensus 207 l~~ 209 (1017)
T PRK09579 207 VRR 209 (1017)
T ss_pred HHH
Confidence 873
No 49
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=36.06 E-value=2e+02 Score=32.60 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCceeEEeecCC-CEEEEEe--------cCCHHHHHHHHH
Q 020014 168 EKILKIVSKTKGVMDKSIDKQK-DTVTVKG--------TMDAKALAEVLK 208 (332)
Q Consensus 168 ~kIek~L~kl~GV~sv~vd~~~-~~vtV~g--------~~d~~~L~~~L~ 208 (332)
..|+..|.+++||..|.+.... ..+.|.- .+++.+|...|+
T Consensus 169 ~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~ 218 (1040)
T PRK10503 169 TRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT 218 (1040)
T ss_pred HHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHH
Confidence 5799999999999999988743 4566641 256677778887
No 50
>PRK11018 hypothetical protein; Provisional
Probab=35.74 E-value=1.6e+02 Score=22.32 Aligned_cols=56 Identities=11% Similarity=-0.006 Sum_probs=39.0
Q ss_pred EEEee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEecCCHHHHHHHHHHcCCCceEEc
Q 020014 155 AVLKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKGTMDAKALAEVLKERLKRPVEIV 218 (332)
Q Consensus 155 ~~lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g~~d~~~L~~~L~kk~G~~a~vv 218 (332)
.+|-+ |+.|+--.-+.+++|.+++.-+.+.| .+........|...++ ..|+.+..+
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G~~L~V-------~~d~~~a~~di~~~~~-~~G~~v~~~ 65 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKGEILEV-------VSDCPQSINNIPLDAR-NHGYTVLDI 65 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCCCEEEE-------EeCCccHHHHHHHHHH-HcCCEEEEE
Confidence 46888 99999999999999988853222221 2222345577788888 889887643
No 51
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=35.20 E-value=3.2e+02 Score=30.92 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCceeEEeecCC-CEEEEEe--------cCCHHHHHHHHHH
Q 020014 167 IEKILKIVSKTKGVMDKSIDKQK-DTVTVKG--------TMDAKALAEVLKE 209 (332)
Q Consensus 167 a~kIek~L~kl~GV~sv~vd~~~-~~vtV~g--------~~d~~~L~~~L~k 209 (332)
...|+..|.+++||.+|++.... ..+.|.- .+.+.+|...|+.
T Consensus 159 ~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~~al~~ 210 (1025)
T PRK10614 159 STQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRQAISN 210 (1025)
T ss_pred HHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 35799999999999999997743 3455541 2566777788873
No 52
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=35.03 E-value=1e+02 Score=34.61 Aligned_cols=125 Identities=17% Similarity=0.208 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCCccEEEEeccCceEEEeee----cCchhhHhhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020014 67 NKIVRYARSFEGVEAVKAEVAANKITIVGA----VDPSKIREKLDKKTKKKIDLISPQPKKDNKDKEPKQDNKPKDNKSP 142 (332)
Q Consensus 67 ~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~----~dp~~l~~~i~~k~G~~velis~~p~~~~~~~e~~~~~kk~~~~~~ 142 (332)
..|+.+|+.++||.++.-....+..+|.-. .|.+..+..++.++.. + .+.-|..-.. |
T Consensus 63 ~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~~d~~~a~~~v~~~i~~-~--~~~LP~~~~~---------------p 124 (1021)
T PF00873_consen 63 KPLEEALSSVEGVKEIRSTSREGSSSITVEFDDGTDIDEALQEVREKIDQ-I--RSDLPPGVEE---------------P 124 (1021)
T ss_dssp HHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTTS-HHHHHHHHHHHHHH-H--GGGS-HHHHH---------------H
T ss_pred HHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccccCHHHHHHHHHHHHHh-h--hhhCcccccC---------------C
Confidence 568999999999999999888888887633 3444444444322210 0 0001100000 0
Q ss_pred CCCCCCCCCceeEEEee--c---cc----chhhHHHHHHHHhcCCCceeEEeec-CCCEEEEEe--------cCCHHHHH
Q 020014 143 DDKKPKEPPVMTAVLKL--G---LH----CQGCIEKILKIVSKTKGVMDKSIDK-QKDTVTVKG--------TMDAKALA 204 (332)
Q Consensus 143 ~~~k~~~~~~~~~~lkV--g---m~----C~~Ca~kIek~L~kl~GV~sv~vd~-~~~~vtV~g--------~~d~~~L~ 204 (332)
.-.....+....+.|.+ . ++ ..-....|+..|.+++||.+|.+.. ....+.|.- .++..+|.
T Consensus 125 ~i~~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~ 204 (1021)
T PF00873_consen 125 QIFKFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVA 204 (1021)
T ss_dssp EEEEEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHH
T ss_pred ceeeccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHH
Confidence 00000000011223444 2 11 2234467999999999999999987 444555641 26777788
Q ss_pred HHHHH
Q 020014 205 EVLKE 209 (332)
Q Consensus 205 ~~L~k 209 (332)
..|+.
T Consensus 205 ~~l~~ 209 (1021)
T PF00873_consen 205 QALQA 209 (1021)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88883
No 53
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=32.83 E-value=1.3e+02 Score=21.67 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=35.2
Q ss_pred Eee-cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEEe--cCCHHHHHHHHHHcCCCceEEc
Q 020014 157 LKL-GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVKG--TMDAKALAEVLKERLKRPVEIV 218 (332)
Q Consensus 157 lkV-gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~g--~~d~~~L~~~L~kk~G~~a~vv 218 (332)
|-+ |+.|+.-.-++.++| .+.. .+.+.|.. ......|...++ +.|+.+.+.
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~-~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAE-SRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHH-HcCCEEEEE
Confidence 456 899999999999998 5532 22334432 244478888888 889988543
No 54
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=31.73 E-value=39 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHhc---CCCceeEEeecCCCEEEEEecCCH
Q 020014 168 EKILKIVSK---TKGVMDKSIDKQKDTVTVKGTMDA 200 (332)
Q Consensus 168 ~kIek~L~k---l~GV~sv~vd~~~~~vtV~g~~d~ 200 (332)
.+|+.+|.. +++. .+.+....+.|++.|.++.
T Consensus 2 ~~v~~~L~~~~~~~~~-~i~v~v~~g~v~L~G~v~s 36 (64)
T PF04972_consen 2 TKVRAALRADPWLPDS-NISVSVENGVVTLSGEVPS 36 (64)
T ss_dssp -----------CTT-T-TEEEEEECTEEEEEEEESS
T ss_pred cccccccccccccCCC-eEEEEEECCEEEEEeeCcH
Confidence 356666666 3344 5677778888888887543
No 55
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=31.31 E-value=4.3e+02 Score=25.42 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhhhhcccccc--cccCCCCCCCCCCCCCCCCCCCCCCC
Q 020014 63 EGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKLDKKTKKKI--DLISPQPKKDNKDKEPKQDNKPKDNK 140 (332)
Q Consensus 63 ~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~v--elis~~p~~~~~~~e~~~~~kk~~~~ 140 (332)
..=...+...|++++||.+|+. +++++.++.+++..|... +.+...
T Consensus 78 ~~~~~~l~~~L~~~~~V~~v~~------------vskeeal~~l~~~~g~~~~l~~l~~n-------------------- 125 (309)
T PRK11026 78 DDAANAVVEQLKAEDGVEKVNY------------LSREEALGEFRNWSGFGGALDMLEEN-------------------- 125 (309)
T ss_pred HHHHHHHHHHHhCCCCcceEEE------------ECHHHHHHHHHHhhCchHHHhhCcCC--------------------
Confidence 3344689999999999998877 577777777764334211 111100
Q ss_pred CCCCCCCCCCCceeEEEee--cccchhhHHHHHHHHhcCCCceeEEeec
Q 020014 141 SPDDKKPKEPPVMTAVLKL--GLHCQGCIEKILKIVSKTKGVMDKSIDK 187 (332)
Q Consensus 141 ~~~~~k~~~~~~~~~~lkV--gm~C~~Ca~kIek~L~kl~GV~sv~vd~ 187 (332)
+-+.. +.+++ +..-..-...|.+.|..++||.++..+.
T Consensus 126 -------PLP~s--i~V~~~~~~~~~~~~~~i~~~l~~~~~V~~v~~~~ 165 (309)
T PRK11026 126 -------PLPAV--AIIIPKLDFQSSEKLNTLRDRLAQIKGVDEVRMDD 165 (309)
T ss_pred -------CCCCe--EEEEecCCCCCHHHHHHHHHHHhcCCCCceeecCh
Confidence 01112 23333 4446667889999999999999876543
No 56
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=30.95 E-value=3.5e+02 Score=23.86 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=32.4
Q ss_pred ecccchhhHHHHHHHHh--------cCCCce------eEE-eecCCCEEEEEecCCHHHHHHHHH
Q 020014 159 LGLHCQGCIEKILKIVS--------KTKGVM------DKS-IDKQKDTVTVKGTMDAKALAEVLK 208 (332)
Q Consensus 159 Vgm~C~~Ca~kIek~L~--------kl~GV~------sv~-vd~~~~~vtV~g~~d~~~L~~~L~ 208 (332)
..|.|.-.-..|-..+. ..||+. .++ .=|.+|+|+|+|.-..+++...+.
T Consensus 102 ~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~pk~t~lIF~sGkvvitGaks~~~~~~a~~ 166 (174)
T cd00652 102 CDLGFPIRLEELALKHPENASYEPELFPGLIYRMDEPKVVLLIFVSGKIVITGAKSREDIYEAVE 166 (174)
T ss_pred EECCCcccHHHHHhhhhcccEECCccCceEEEEecCCcEEEEEEcCCEEEEEecCCHHHHHHHHH
Confidence 35666666666655554 456643 222 335999999999878777776665
No 57
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.93 E-value=1e+02 Score=22.22 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=24.6
Q ss_pred eEEEeecccchh-hHHHHHHHHhcCCCceeEEe
Q 020014 154 TAVLKLGLHCQG-CIEKILKIVSKTKGVMDKSI 185 (332)
Q Consensus 154 ~~~lkVgm~C~~-Ca~kIek~L~kl~GV~sv~v 185 (332)
.+.|.|...-.. -...|.+.|.+++||.+|.+
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 445555555554 78899999999999999875
No 58
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.29 E-value=1.6e+02 Score=21.07 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=25.1
Q ss_pred eEEEEEEeecChh-HHHHHHHHHhcCCCccEEEE
Q 020014 52 VTVILKVDMHCEG-CANKIVRYARSFEGVEAVKA 84 (332)
Q Consensus 52 ~~v~lkV~M~C~~-Ca~kIe~aL~~l~GV~~V~v 84 (332)
..+.|.|...-.. -...|...|++++||.+|.+
T Consensus 41 ~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 41 ANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 4556666655554 77899999999999999875
No 59
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=25.71 E-value=1.4e+02 Score=26.56 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=28.6
Q ss_pred EEEEEeecChhHH------HHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhh
Q 020014 54 VILKVDMHCEGCA------NKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKL 106 (332)
Q Consensus 54 v~lkV~M~C~~Ca------~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i 106 (332)
+.+.+.+...+|. ..|+.+|..++||.+|.+++ +.....+++.+.+..
T Consensus 115 V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l-----~~dp~W~~~~~s~~a 168 (174)
T TIGR03406 115 VDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL-----VFDPPWSREMMSEAA 168 (174)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE-----EecCCCChHHCCHHH
Confidence 4444444444443 45889999999999888754 222234555554433
No 60
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=24.49 E-value=1.7e+02 Score=21.67 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.4
Q ss_pred HhcCCCceeEEeecCC-CEEEEEecCCHHHHHHHHHHcCCCceE
Q 020014 174 VSKTKGVMDKSIDKQK-DTVTVKGTMDAKALAEVLKERLKRPVE 216 (332)
Q Consensus 174 L~kl~GV~sv~vd~~~-~~vtV~g~~d~~~L~~~L~kk~G~~a~ 216 (332)
|..++||.++...-.. -++.|....+...|+..|. ..|. +.
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~-~~g~-I~ 67 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELI-EKGI-IR 67 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHH-hCCC-ee
Confidence 7788999999864322 3444555578899999999 6676 54
No 61
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=24.16 E-value=1.7e+02 Score=25.31 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=28.8
Q ss_pred cchhhHHHHHHHHhcCCCceeEEeecCCCEEEEE
Q 020014 162 HCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVK 195 (332)
Q Consensus 162 ~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~ 195 (332)
.-..=+..|.+.|.+++||.++.+=.....+.|.
T Consensus 72 ~~~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 72 DRQQLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 3445688999999999999999998888888774
No 62
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=24.16 E-value=1.3e+02 Score=27.68 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHhcCCCceeEEeecCCCE-------------------EEEEe---cCCHHHHHHHHH
Q 020014 164 QGCIEKILKIVSKTKGVMDKSIDKQKDT-------------------VTVKG---TMDAKALAEVLK 208 (332)
Q Consensus 164 ~~Ca~kIek~L~kl~GV~sv~vd~~~~~-------------------vtV~g---~~d~~~L~~~L~ 208 (332)
.+|-+-++..+.+++||.++.+-.+.+. |.|.- .++-+.|+..+.
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 4677778888999999999999887552 34432 366788888877
No 63
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=24.06 E-value=5.6e+02 Score=24.62 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=52.3
Q ss_pred EEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEeeecCchhhHhhhhhcccccccccCCCCCCCCCCCCCCC
Q 020014 54 VILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIVGAVDPSKIREKLDKKTKKKIDLISPQPKKDNKDKEPKQ 132 (332)
Q Consensus 54 v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~~dp~~l~~~i~~k~G~~velis~~p~~~~~~~e~~~ 132 (332)
+++-++ -.-+.-...+...|++.+||.+|+. +++++.++.+++..|... .....+.
T Consensus 68 i~vyl~~~~~~~~~~~l~~~l~~~~~V~~v~~------------iskeeAl~~l~~~~g~~~-~l~~l~~---------- 124 (309)
T TIGR00439 68 ITVYLEKALAQSDADTVVSLLTRDKGVENINY------------ISREDGLAEFQSWSGFGN-LLSMLDG---------- 124 (309)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCccEEEE------------ECHHHHHHHHHHhcCCch-hhhhccc----------
Confidence 444344 2234445789999999999998877 577777777763333211 1100000
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEEEee--cccchhhHHHHHHHHhcCCCceeEEe
Q 020014 133 DNKPKDNKSPDDKKPKEPPVMTAVLKL--GLHCQGCIEKILKIVSKTKGVMDKSI 185 (332)
Q Consensus 133 ~~kk~~~~~~~~~k~~~~~~~~~~lkV--gm~C~~Ca~kIek~L~kl~GV~sv~v 185 (332)
.+- ...+.+++ +..-+.=...|.+.|.+++||..+..
T Consensus 125 --------------nPL--P~si~V~l~~~~~~~~~~~~l~~~l~~~~gV~~v~~ 163 (309)
T TIGR00439 125 --------------NPL--PAVFIVTPDPAFTPAEMQAILRDNITKIPGVEEVRM 163 (309)
T ss_pred --------------CCC--CCeEEEEeCCCCChHHHHHHHHHHHhcCCCCCcccc
Confidence 001 11223333 22233445778889999999998754
No 64
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=23.97 E-value=1e+02 Score=27.77 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHhcCCCceeEEeecCCCE-------------------EEEEe---cCCHHHHHHHHH
Q 020014 164 QGCIEKILKIVSKTKGVMDKSIDKQKDT-------------------VTVKG---TMDAKALAEVLK 208 (332)
Q Consensus 164 ~~Ca~kIek~L~kl~GV~sv~vd~~~~~-------------------vtV~g---~~d~~~L~~~L~ 208 (332)
.+|-+-++..+.+++||.++.+-.+.+. |.|.- .++-+.|+..+.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff 81 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFF 81 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHH
Confidence 3566667777889999999999887764 34432 366788888776
No 65
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=23.94 E-value=91 Score=23.19 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=32.3
Q ss_pred CceEEEEEEe-ecChhHHHHHHHHHhcCCCccEEEEeccCceEEEe
Q 020014 50 SSVTVILKVD-MHCEGCANKIVRYARSFEGVEAVKAEVAANKITIV 94 (332)
Q Consensus 50 ~~~~v~lkV~-M~C~~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~ 94 (332)
...+++|.|+ --|.+--.-+..++-.+.--+...+-|.++++.+.
T Consensus 17 ~~~~~tl~vDg~~v~~PD~El~sA~~HlH~GEkA~V~FkS~Rv~~i 62 (68)
T PF09122_consen 17 TLDNATLIVDGEIVENPDAELKSALVHLHIGEKAQVFFKSQRVAVI 62 (68)
T ss_dssp -TTT--EEETTEEESS--HHHHHHHTT-BTT-EEEEEETTS-EEEE
T ss_pred cccceEEEEcCeEcCCCCHHHHHHHHHhhcCceeEEEEecCcEEEE
Confidence 4456788998 88999989999999999888889999999998876
No 66
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=23.51 E-value=92 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCceeEEeecC
Q 020014 168 EKILKIVSKTKGVMDKSIDKQ 188 (332)
Q Consensus 168 ~kIek~L~kl~GV~sv~vd~~ 188 (332)
..|+.+|..++|+.++.|++.
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE
Confidence 457888999999999998753
No 67
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=23.36 E-value=3.2e+02 Score=20.34 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhcC---CCceeEEeecCCCEEEEE--ecCCHHHHHHHHHHcCCCceEE
Q 020014 164 QGCIEKILKIVSKT---KGVMDKSIDKQKDTVTVK--GTMDAKALAEVLKERLKRPVEI 217 (332)
Q Consensus 164 ~~Ca~kIek~L~kl---~GV~sv~vd~~~~~vtV~--g~~d~~~L~~~L~kk~G~~a~v 217 (332)
..-..++..+|.++ +=-..+..|-.++.+.|. |.+-.+.++..|+.+.|..+++
T Consensus 15 ~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~ 73 (75)
T PF14492_consen 15 KEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEF 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEE
T ss_pred HhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEe
Confidence 44445555555544 223457888899999887 4578899999999776655543
No 68
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=21.93 E-value=1e+02 Score=27.38 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCceeEEeec
Q 020014 168 EKILKIVSKTKGVMDKSIDK 187 (332)
Q Consensus 168 ~kIek~L~kl~GV~sv~vd~ 187 (332)
..|+.+|..++||.+|.|++
T Consensus 134 ~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 134 EDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred HHHHHHHHhCCCceeEEEEE
Confidence 45889999999999988754
No 69
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.89 E-value=4.4e+02 Score=23.30 Aligned_cols=24 Identities=4% Similarity=0.140 Sum_probs=18.4
Q ss_pred eecCCCEEEEEecCCHHHHHHHHH
Q 020014 185 IDKQKDTVTVKGTMDAKALAEVLK 208 (332)
Q Consensus 185 vd~~~~~vtV~g~~d~~~L~~~L~ 208 (332)
.=|.+++|+|+|.-+.+++...++
T Consensus 142 lIF~SGKvvitGaks~~~~~~a~~ 165 (174)
T cd04518 142 LLFSSGKMVITGAKSEEDAKRAVE 165 (174)
T ss_pred EEeCCCEEEEEecCCHHHHHHHHH
Confidence 346999999999877777666655
No 70
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=21.78 E-value=3.5e+02 Score=20.54 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhcCCCceeEEeecCCCEEEEE-ecCCHHHHHHHHH
Q 020014 165 GCIEKILKIVSKTKGVMDKSIDKQKDTVTVK-GTMDAKALAEVLK 208 (332)
Q Consensus 165 ~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~-g~~d~~~L~~~L~ 208 (332)
.=...+.++|..++||.-...+.. +++.|+ -.-+...+.+.|.
T Consensus 15 ~~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~ 58 (79)
T PF03927_consen 15 ERLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLID 58 (79)
T ss_dssp CCHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHH
Confidence 345678899999999987677766 777665 2345566666655
No 71
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=21.66 E-value=1.2e+02 Score=23.73 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=23.8
Q ss_pred eEEEEEEe-ecChhHH---HHHHHHHhcCCCccEEEEec
Q 020014 52 VTVILKVD-MHCEGCA---NKIVRYARSFEGVEAVKAEV 86 (332)
Q Consensus 52 ~~v~lkV~-M~C~~Ca---~kIe~aL~~l~GV~~V~vd~ 86 (332)
..+.|.+. -.|.... ..|+.+|..++|+.+|.+++
T Consensus 39 v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i 77 (99)
T TIGR02945 39 VDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVEL 77 (99)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 44555555 4444332 45888899999999998875
No 72
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=21.09 E-value=2.6e+02 Score=20.50 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=27.3
Q ss_pred CCceEEEEEEeecChhHHHHHHHHHhcCCCccEEE
Q 020014 49 KSSVTVILKVDMHCEGCANKIVRYARSFEGVEAVK 83 (332)
Q Consensus 49 ~~~~~v~lkV~M~C~~Ca~kIe~aL~~l~GV~~V~ 83 (332)
.....+.|.|...-..=...|...|++++||.+|.
T Consensus 45 ~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 45 DGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred CCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 34566777777776666778999999999998875
No 73
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=20.97 E-value=69 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHhcCCCceeEEeecCCCE--------------EEEEe---cCCHHHHHHHHH
Q 020014 164 QGCIEKILKIVSKTKGVMDKSIDKQKDT--------------VTVKG---TMDAKALAEVLK 208 (332)
Q Consensus 164 ~~Ca~kIek~L~kl~GV~sv~vd~~~~~--------------vtV~g---~~d~~~L~~~L~ 208 (332)
.+|-+-++..+.+++||.++.+-.+.+. |.|+- .++-+.|+..+.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~ 69 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLF 69 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHH
Confidence 4677888888999999999999876643 33332 366788888776
No 74
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=20.37 E-value=3e+02 Score=24.08 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=41.3
Q ss_pred CCCCCceeEEEee---cccchhhHHHHHHHHhcCCCceeEEeecCCCEEEEE-ecC-CHHHHHHHHH
Q 020014 147 PKEPPVMTAVLKL---GLHCQGCIEKILKIVSKTKGVMDKSIDKQKDTVTVK-GTM-DAKALAEVLK 208 (332)
Q Consensus 147 ~~~~~~~~~~lkV---gm~C~~Ca~kIek~L~kl~GV~sv~vd~~~~~vtV~-g~~-d~~~L~~~L~ 208 (332)
.++++..+++.+. +|.-.---..|.+.|+.+.-|+||+.-... .++|+ .++ ..-..+.++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-savVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-SAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-eEEEEehhhHHHHHHHHhhc
Confidence 4556677766654 888877778899999999999999975444 44444 333 3344555555
No 75
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=20.23 E-value=2.8e+02 Score=21.76 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCCCccEEEEeccCceEEEeee-cCchhhHhhhh
Q 020014 64 GCANKIVRYARSFEGVEAVKAEVAANKITIVGA-VDPSKIREKLD 107 (332)
Q Consensus 64 ~Ca~kIe~aL~~l~GV~~V~vd~~s~kvtV~g~-~dp~~l~~~i~ 107 (332)
.-...|..+|..++|++-...|...++++|+-. .+...+++.|.
T Consensus 17 e~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~ 61 (87)
T PRK10553 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHH
Confidence 346789999999999986556677888888742 34444555444
Done!