BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020015
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5UFL3|Y2710_HAEIG UPF0283 membrane protein CGSHiGG_02710 OS=Haemophilus influenzae
(strain PittGG) GN=CGSHiGG_02710 PE=3 SV=1
Length = 354
Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 207 LEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTG 266
L+I KS G E PA+ +++ ++ + F R V + IS+ +
Sbjct: 154 LDIAKSLGLENDSPAVIQWQHQLNEAYSAQEIAHLFSRHVLSSFDAQAKKLISKMAAESA 213
Query: 267 FVEGMAPVFSRSAWYCAWHLIQ--NDLVHGWGMDMKLGYCAQVRLLRCVL 314
+ ++P+ ++ AW ++ N + +G++ LGY +++RLLR VL
Sbjct: 214 VIVAISPLAVVDMFFIAWRNLRLMNKIAEIYGIE--LGYFSRIRLLRMVL 261
>sp|B0UT28|Y945_HAES2 UPF0283 membrane protein HSM_0945 OS=Haemophilus somnus (strain
2336) GN=HSM_0945 PE=3 SV=1
Length = 357
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 207 LEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTG 266
L+I G + P L ++H +T + + F + V V IS+ +
Sbjct: 158 LKIASLMGIDDKSPQLIAWQEQVHEAYTEQEILRLFSQNVLIPFDRVAKKLISKNAVESA 217
Query: 267 FVEGMAPVFSRSAWYCAWHLIQ--NDLVHGWGMDMKLGYCAQVRLLRCV 313
+ ++P+ ++ AW I+ N L +G++ LGY +++RLLR V
Sbjct: 218 LIVAVSPLAIVDMFFIAWRNIRLINQLAKLYGIE--LGYVSRLRLLRMV 264
>sp|Q0I337|Y596_HAES1 UPF0283 membrane protein HS_0596 OS=Haemophilus somnus (strain
129Pt) GN=HS_0596 PE=3 SV=1
Length = 357
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 207 LEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTG 266
L+I G + P L ++H +T + + F + V V IS+ +
Sbjct: 158 LKIASLMGIDDKSPQLIAWQEQVHEAYTEQEILRLFSQNVLIPFDRVAKKLISKNAVESA 217
Query: 267 FVEGMAPVFSRSAWYCAWHLIQ--NDLVHGWGMDMKLGYCAQVRLLRCV 313
+ ++P+ ++ AW I+ N L +G++ LGY +++RLLR V
Sbjct: 218 LIVAVSPLAIVDMFFIAWRNIRLINQLAKLYGIE--LGYVSRLRLLRMV 264
>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4
Length = 1975
Score = 35.4 bits (80), Expect = 0.58, Method: Composition-based stats.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 23/198 (11%)
Query: 40 FVVYRTTYYQYKQTEMEAKF--SPFDISKGSRFSSGRLKSLPRGIVQARSDLEL--RPL- 94
F++ + Y++ T+ SPF IS+ R S+ + + Q R +LE+ R L
Sbjct: 1590 FMIVASNLYKFGATKSTGSIVPSPFAISQDGRISANTIMAEYN---QDRFELEIVARELE 1646
Query: 95 --WSTSSSRKKFGVYSNRNLLAI-----PAGIKQ-KDNVDAIVRKFLPENFTV--ILFHY 144
S++S++ V+ L+ + P + Q ++ + A +R V I FH
Sbjct: 1647 QPQSSASTKVNIWVFDGTQLVRVILSRPPEEVYQEQEEIIAELRNATQHRIIVDEIRFHL 1706
Query: 145 DGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPR 204
D + R +DW + H A QT+ + D+ NYDY+ + +EN P
Sbjct: 1707 D-SIGRIR-MDWCDLYFH-AVDPQTQQIAPVDEILKDIDRNYDYLKDYYAGFAIENVVP- 1762
Query: 205 RYLEIVKSEGFEISQPAL 222
Y+ IV+ E F+++ L
Sbjct: 1763 AYIAIVQDE-FDLAVAGL 1779
>sp|P43931|Y043_HAEIN UPF0283 membrane protein HI_0043 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0043 PE=3 SV=1
Length = 354
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 207 LEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTG 266
L+I KS G E P + +++ ++ + F R V + IS+ +
Sbjct: 154 LDIAKSLGLENDSPTVIQWQHQLNEAYSAQEIAHLFSRHVLSSFDAQAKKLISKMAAESA 213
Query: 267 FVEGMAPVFSRSAWYCAWHLIQ--NDLVHGWGMDMKLGYCAQVRLLRCVL 314
+ ++P+ ++ AW ++ N + +G++ LGY ++RLLR VL
Sbjct: 214 VIVAISPLAVVDMFFIAWRNLRLMNKIAEIYGIE--LGYFPRIRLLRMVL 261
>sp|B4N549|QTRD1_DROWI Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog
OS=Drosophila willistoni GN=GK20504 PE=3 SV=1
Length = 428
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 197 GVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRA---RTKKFHRRVYDLRGSV 253
G E+ P RY+EI+ S +I Q D ++ K ++ RT++F +Y+ G +
Sbjct: 128 GKESLTPERYMEIIASFKPDIYQGLCDADTNLESSKKRVQKSVDRTERFMDYIYEQHGKL 187
Query: 254 KCTNISEGPPCTG 266
+ T+ S P G
Sbjct: 188 QSTSSSLLAPIVG 200
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 163 IAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLGVENFD 202
+ A+ TKWWF R L V++ + LWD D G+ D
Sbjct: 393 MTAEEDTKWWFKNRELGILSTVASTGMVVLWDIDGGLTKID 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,592,927
Number of Sequences: 539616
Number of extensions: 5155972
Number of successful extensions: 12326
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12324
Number of HSP's gapped (non-prelim): 14
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)