Query 020015
Match_columns 332
No_of_seqs 131 out of 152
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 5E-116 1E-120 829.9 21.0 249 68-323 3-252 (294)
2 TIGR01556 rhamnosyltran L-rham 90.3 1 2.2E-05 41.2 7.1 130 184-326 72-205 (281)
3 cd04185 GT_2_like_b Subfamily 88.4 1.2 2.7E-05 37.9 5.8 98 184-325 78-176 (202)
4 cd04186 GT_2_like_c Subfamily 86.7 1.4 3E-05 35.3 4.9 90 185-322 74-165 (166)
5 cd02510 pp-GalNAc-T pp-GalNAc- 84.5 6.4 0.00014 36.5 8.8 41 184-224 82-122 (299)
6 cd02526 GT2_RfbF_like RfbF is 75.5 6.3 0.00014 34.2 5.3 23 185-207 75-97 (237)
7 cd02520 Glucosylceramide_synth 66.6 6 0.00013 34.1 3.2 27 184-210 85-111 (196)
8 COG1216 Predicted glycosyltran 64.3 22 0.00047 33.6 6.6 135 186-326 85-224 (305)
9 PF01762 Galactosyl_T: Galacto 64.2 15 0.00032 32.5 5.2 177 91-307 6-186 (195)
10 cd06434 GT2_HAS Hyaluronan syn 63.1 4.1 9E-05 35.3 1.5 41 184-224 76-116 (235)
11 cd06421 CESA_CelA_like CESA_Ce 60.8 7.2 0.00016 33.6 2.6 38 184-221 83-121 (234)
12 PF00535 Glycos_transf_2: Glyc 60.0 7.7 0.00017 30.6 2.4 36 184-219 77-112 (169)
13 PF13641 Glyco_tranf_2_3: Glyc 59.1 4.5 9.7E-05 35.1 1.0 41 184-224 85-125 (228)
14 PF12621 DUF3779: Phosphate me 57.9 15 0.00033 30.1 3.9 53 174-231 33-87 (95)
15 cd02525 Succinoglycan_BP_ExoA 57.7 8.3 0.00018 33.4 2.4 39 184-222 80-118 (249)
16 cd06442 DPM1_like DPM1_like re 52.6 8.8 0.00019 32.9 1.7 35 184-218 77-111 (224)
17 cd06435 CESA_NdvC_like NdvC_li 52.3 8.3 0.00018 33.7 1.5 37 185-221 84-120 (236)
18 cd04195 GT2_AmsE_like GT2_AmsE 45.3 19 0.00042 30.3 2.7 39 184-222 79-118 (201)
19 PF02434 Fringe: Fringe-like; 42.4 24 0.00051 33.3 3.0 103 183-307 84-193 (252)
20 cd06437 CESA_CaSu_A2 Cellulose 41.4 16 0.00034 32.2 1.6 38 184-221 86-123 (232)
21 PF13506 Glyco_transf_21: Glyc 40.4 20 0.00043 31.8 2.0 125 184-325 30-156 (175)
22 cd06423 CESA_like CESA_like is 39.2 19 0.00042 28.1 1.6 38 185-222 78-116 (180)
23 PF09258 Glyco_transf_64: Glyc 38.8 43 0.00093 31.7 4.1 95 118-213 8-103 (247)
24 cd00761 Glyco_tranf_GTA_type G 38.7 26 0.00057 26.6 2.3 22 185-206 77-98 (156)
25 cd04184 GT2_RfbC_Mx_like Myxoc 35.7 29 0.00062 29.2 2.3 37 184-220 82-119 (202)
26 PF09828 Chrome_Resist: Chroma 34.5 29 0.00062 31.0 2.1 48 171-224 15-80 (135)
27 cd06433 GT_2_WfgS_like WfgS an 32.6 48 0.001 27.3 3.1 35 184-218 74-109 (202)
28 cd04192 GT_2_like_e Subfamily 32.4 35 0.00075 29.1 2.3 36 184-219 81-116 (229)
29 PF10111 Glyco_tranf_2_2: Glyc 31.8 57 0.0012 30.5 3.8 95 113-208 2-111 (281)
30 cd02522 GT_2_like_a GT_2_like_ 31.1 36 0.00077 29.1 2.1 41 184-224 71-111 (221)
31 PF12996 DUF3880: DUF based on 30.9 24 0.00053 27.6 1.0 25 180-214 13-37 (79)
32 cd04196 GT_2_like_d Subfamily 30.7 43 0.00092 28.2 2.5 26 184-209 78-103 (214)
33 cd06439 CESA_like_1 CESA_like_ 29.7 31 0.00067 30.4 1.5 39 184-222 108-146 (251)
34 KOG2264 Exostosin EXT1L [Signa 28.6 71 0.0015 35.1 4.2 96 117-213 631-752 (907)
35 TIGR03469 HonB hopene-associat 27.7 56 0.0012 32.1 3.1 33 186-218 134-166 (384)
36 PHA03165 hypothetical protein; 26.9 49 0.0011 25.1 1.9 32 30-70 23-54 (57)
37 cd06427 CESA_like_2 CESA_like_ 26.6 59 0.0013 28.9 2.8 38 184-221 83-122 (241)
38 PF06679 DUF1180: Protein of u 25.3 1.2E+02 0.0026 27.8 4.5 24 24-47 95-118 (163)
39 KOG0747 Putative NAD+-dependen 25.0 95 0.0021 31.5 4.1 75 109-183 7-82 (331)
40 cd06420 GT2_Chondriotin_Pol_N 24.0 52 0.0011 27.2 1.8 26 184-209 78-103 (182)
41 PF07976 Phe_hydrox_dim: Pheno 23.9 1.2E+02 0.0026 27.1 4.1 72 75-157 33-124 (169)
42 PLN02726 dolichyl-phosphate be 23.1 68 0.0015 28.7 2.5 108 108-220 8-128 (243)
43 PF14538 Raptor_N: Raptor N-te 22.0 47 0.001 29.7 1.2 11 137-147 90-100 (154)
44 KOG1555 26S proteasome regulat 21.3 45 0.00097 33.6 1.0 41 255-295 80-120 (316)
45 cd06430 GT8_like_2 GT8_like_2 20.7 2E+02 0.0043 28.6 5.4 102 111-214 2-124 (304)
46 PF07172 GRP: Glycine rich pro 20.3 1.3E+02 0.0028 25.1 3.4 10 26-35 4-13 (95)
47 PF11057 Cortexin: Cortexin of 20.2 1E+02 0.0022 25.5 2.6 49 1-49 1-52 (81)
48 PLN02867 Probable galacturonos 20.0 40 0.00087 36.1 0.5 34 175-209 334-367 (535)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=4.8e-116 Score=829.91 Aligned_cols=249 Identities=60% Similarity=1.099 Sum_probs=239.8
Q ss_pred cccCCCCcCCCCCCceecCCCcceecCCCCCCCCCccCCCCCccEEEEeecCccccchhHHHhhcCCCCcEEEEEEecCC
Q 020015 68 SRFSSGRLKSLPRGIVQARSDLELRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDGD 147 (332)
Q Consensus 68 ~~~~~~g~e~Lp~giv~~~sd~~lr~Lwg~~~~~~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLFhYDg~ 147 (332)
.+++|+|+|+||+|||+++|||+||||||.|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+
T Consensus 3 ~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~---~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~ 78 (294)
T PF05212_consen 3 VPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL---PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGR 78 (294)
T ss_pred cCCCCCccccCCCCccccCCCceeeecCCCccccc---cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCC
Confidence 46899999999999999999999999999999887 458899999999999999999999999 89999999999999
Q ss_pred CCccCccccCCceEEEEEeccccchhcccccCcccccccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCCCCC
Q 020015 148 VNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNST 227 (332)
Q Consensus 148 vd~W~d~ews~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~ 227 (332)
||+|++||||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++|||||||||||+++|
T Consensus 79 vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~ 158 (294)
T PF05212_consen 79 VDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSS 158 (294)
T ss_pred cCchhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeeeeeeeecCcceeeeeecccCCccCCCCCCCCCccceEEEeccccchhHHHHhhhhcccCCccccchhhhhhhhhcc
Q 020015 228 EIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQV 307 (332)
Q Consensus 228 ~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c~q~ 307 (332)
++||+||+|++++++|| +.++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||++.
T Consensus 159 ~~~~~iT~R~~~~~vhr---~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~ 235 (294)
T PF05212_consen 159 EIHHPITKRRPDSEVHR---KTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGD 235 (294)
T ss_pred eeeeeEEeecCCceeEe---ccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhcc
Confidence 99999999999999998 557788898999999999999999999999999999999999999999999999999966
Q ss_pred Cccc-ceeeeeeEeeec
Q 020015 308 RLLR-CVLDKVYQLLIF 323 (332)
Q Consensus 308 ~~~k-~VVDa~~VvH~~ 323 (332)
+.++ ||||||||+|.-
T Consensus 236 ~~~kiGVVDs~~VvH~g 252 (294)
T PF05212_consen 236 RHKKIGVVDSQYVVHTG 252 (294)
T ss_pred ccccEEEEeeEEEEEcC
Confidence 6666 999999999985
No 2
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=90.28 E-value=1 Score=41.19 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=70.6
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHh--CCcccccCC-CCCCCceeeeeeeeecCcceeeeeecccCCccCCCCCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE--GFEISQPAL-DPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISE 260 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~~~ 260 (332)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|.. +.+.+ ...+..... .. ..+.. ... ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~-------~~~-~~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLD-GL-LLRQI-------SLD-GLT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeec-cc-ceeee-------ccc-ccC
Confidence 479999999999999998999999988876 567777764 33221 112221111 11 00000 000 000
Q ss_pred CCCccceEEEeccccchhHHHHhhhhcccCCccccchhhhhhhhhccCccc-ceeeeeeEeeecceE
Q 020015 261 GPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQVRLLR-CVLDKVYQLLIFFRC 326 (332)
Q Consensus 261 ~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c~q~~~~k-~VVDa~~VvH~~~~~ 326 (332)
.+.-+.++=.-..+++|++++.+= + +++.--.++.|.-|..-+....-+ .++...-+.|..|.+
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG-~-fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~ 205 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLG-M-MDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDS 205 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhC-C-ccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCCc
Confidence 111111110012368999998873 2 334333466787775433332333 447777888987643
No 3
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.37 E-value=1.2 Score=37.90 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCCCCCceeeeeeeeecCcceeeeeecccCCccCCCCCCCCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~~~~pp 263 (332)
+.+||+++.|+|..++.--++++.+.+++.+..+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 67999999999999998888888887764445444433221110 1
Q ss_pred ccceEEEeccccchhHHHHhhhhcccCCccccchhhhhhhhhc-cCcccceeeeeeEeeecce
Q 020015 264 CTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQ-VRLLRCVLDKVYQLLIFFR 325 (332)
Q Consensus 264 cTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c~q-~~~~k~VVDa~~VvH~~~~ 325 (332)
+.++ +++|++|+.+ . ...+.-..||=|.-+.+-+. ..... .+.+..+.|.-+.
T Consensus 123 ~~~~------~~~~~~~~~~-g-~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~ 176 (202)
T cd04185 123 FVGV------LISRRVVEKI-G-LPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAI 176 (202)
T ss_pred eEEE------EEeHHHHHHh-C-CCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEcccc
Confidence 1121 4788888766 2 33444567887777654333 22233 6778888887553
No 4
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.66 E-value=1.4 Score=35.33 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=54.8
Q ss_pred ccceEEEeccccccCCCChhHHHHHHHHh-CCcccccCCCCCCCceeeeeeeeecCcceeeeeecccCCccCCCCCCCCC
Q 020015 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (332)
Q Consensus 185 ~YDYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~~~~pp 263 (332)
.+|||++.|+|...+...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999887777777754432 22222222
Q ss_pred ccceEEEeccccchhHHHHhhhhcccCCccccchhhhhhhhhccCccc-ceeeeeeEeee
Q 020015 264 CTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQVRLLR-CVLDKVYQLLI 322 (332)
Q Consensus 264 cTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c~q~~~~k-~VVDa~~VvH~ 322 (332)
+=.-+.+|++++++.+= ..++.-..+|-|..+...+....-+ ..+....+.|.
T Consensus 112 ----~~~~~~~~~~~~~~~~~--~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 ----VSGAFLLVRREVFEEVG--GFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred ----CceeeEeeeHHHHHHcC--CCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 00124578899998662 2344333477788776544432223 34666667774
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=84.49 E-value=6.4 Score=36.52 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=36.3
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 224 (332)
+..|||.+.|.|..++..-++++++.+.+..-.+.-|.+..
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~ 122 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDV 122 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeecc
Confidence 68999999999999999999999999998887777787653
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=75.53 E-value=6.3 Score=34.22 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.7
Q ss_pred ccceEEEeccccccCCCChhHHH
Q 020015 185 NYDYIFLWDEDLGVENFDPRRYL 207 (332)
Q Consensus 185 ~YDYIflwDdDL~vd~f~i~ry~ 207 (332)
.||||++.|+|..++...+++++
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHH
Confidence 68999999999999988888885
No 7
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=66.63 E-value=6 Score=34.08 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.6
Q ss_pred cccceEEEeccccccCCCChhHHHHHH
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIV 210 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Iv 210 (332)
+.+|||++.|.|..++...+.++++..
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHh
Confidence 679999999999888777666666544
No 8
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=64.30 E-value=22 Score=33.60 Aligned_cols=135 Identities=14% Similarity=-0.013 Sum_probs=75.2
Q ss_pred cceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCCCCCceeeeeeeeecCcceeeeeecccCCccCCCC----CCC
Q 020015 186 YDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNI----SEG 261 (332)
Q Consensus 186 YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~----~~~ 261 (332)
|+|++++++|..++...++++++.+++.+-...=|++-.+...-.+ +..+.......... .....+... ...
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLY-IDRRGGESDGLTGG---WRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcc-hheecccccccccc---ceecccccccccccch
Confidence 5599999999999999999999999999877776665443221111 22221111000000 000111111 111
Q ss_pred CCccceEEEeccccchhHHHHhhhhcccCCccccchhhhhhhhhccCccc-ceeeeeeEeeecceE
Q 020015 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQVRLLR-CVLDKVYQLLIFFRC 326 (332)
Q Consensus 262 ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c~q~~~~k-~VVDa~~VvH~~~~~ 326 (332)
+.+.+++..-+-.++|++++.+=. +...-=.+.-|.-+..-+.-..-+ ..+=.-.|.|..+-+
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG~--~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s 224 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVGG--FDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSS 224 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhCC--CCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCC
Confidence 223335677677899999988853 444455566666665444333222 335556677765533
No 9
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=64.20 E-value=15 Score=32.48 Aligned_cols=177 Identities=19% Similarity=0.234 Sum_probs=91.9
Q ss_pred eecCCCCCCCCCccCCCCCccEEEEeecCcc--ccchhHHHhhcCCCCcEEEEEEecCCCCccCccccCCceEEEEEecc
Q 020015 91 LRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQ--KDNVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQ 168 (332)
Q Consensus 91 lr~Lwg~~~~~~~~~~~~~k~Lla~~VG~kq--k~~Vd~~v~kf~~~nF~vmLFhYDg~vd~W~d~ews~~aiHv~a~kq 168 (332)
+|.-||++..-. ..+.-+.+=+|... ...++..+++-....=||+++-+ +|.+..+.. + ....
T Consensus 6 IR~TW~~~~~~~-----~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K-----~~~~ 70 (195)
T PF01762_consen 6 IRETWGNQRNFK-----GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--K-----TLAG 70 (195)
T ss_pred HHHHHhcccccC-----CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--H-----HHHH
Confidence 467788766433 24455666677776 45566766664333447777644 444544311 1 1112
Q ss_pred ccchhcccccCcccccccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCCCCCceeeeeeeeecCcc--eeeee
Q 020015 169 TKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKK--FHRRV 246 (332)
Q Consensus 169 tKWw~akRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~--vHr~~ 246 (332)
-+| ..+.+ .+++||+.-|||+-| ++.++.+..++.-.+.+.+.+... .....-..|++.++ +....
T Consensus 71 ~~w-~~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~ 138 (195)
T PF01762_consen 71 LKW-ASKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEE 138 (195)
T ss_pred HHH-HHhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeee
Confidence 223 22221 358999999999988 556666666665333333333221 22222334444433 11111
Q ss_pred ecccCCccCCCCCCCCCccceEEEeccccchhHHHHhhhhcccCCccccchhhhhhhhhcc
Q 020015 247 YDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQV 307 (332)
Q Consensus 247 ~~~~g~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c~q~ 307 (332)
|.. ..-| .|....+=++|+++.+.+....+ ....-+-=|--+|.|++.
T Consensus 139 y~~---------~~yP---~y~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 139 YPD---------DYYP---PYCSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ccc---------ccCC---CcCCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 211 1123 34456677889999988875432 222223344445777665
No 10
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=63.12 E-value=4.1 Score=35.33 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=35.2
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 224 (332)
+.+|||++.|+|..++...+++.++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 58999999999999999999999998887778887776543
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=60.81 E-value=7.2 Score=33.60 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=33.0
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHH-hCCcccccC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS-EGFEISQPA 221 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~-~gLeISQPA 221 (332)
+.+|||.+.|+|..++.-.++++++.+.+ .++.+.++.
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 48999999999999999999999999887 677777664
No 12
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=60.00 E-value=7.7 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=28.8
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccc
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQ 219 (332)
+..|||++.|+|..++.-.++++++.+++.+-.+.-
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~ 112 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVI 112 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEE
Confidence 667799999999999999999999999997665443
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=59.07 E-value=4.5 Score=35.06 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=29.8
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 224 (332)
+.+|||++.|+|..++...++++++.+...+..+.|+....
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~ 125 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFP 125 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEE
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEee
Confidence 45999999999999999999999999977888888866533
No 14
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=57.89 E-value=15 Score=30.07 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=40.1
Q ss_pred cccccCcccccccceEEEeccccccCCCChhHHHHHHHHhCCcccccC--CCCCCCceee
Q 020015 174 AKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA--LDPNSTEIHH 231 (332)
Q Consensus 174 akRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA--Ld~~s~~i~h 231 (332)
..-|+||.+.++--.|||+-|++|+-.. -++-.++.|+.||.-+ |+. +|.+.|
T Consensus 33 ~~ay~~Pa~~~~~P~lWIP~D~~GvS~~----ei~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 33 KHAYLHPAVSAPQPILWIPRDPLGVSRQ----EIEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred HhccCCHhHcCCCCeEEeecCCCCCCHH----HHHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 4568999999999999999999999654 4555677788888665 444 345544
No 15
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=57.70 E-value=8.3 Score=33.37 Aligned_cols=39 Identities=18% Similarity=0.035 Sum_probs=32.6
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPAL 222 (332)
+.+|||.+.|+|..++...+++.++..++.+..+.++..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 479999999999999988899999888877777765543
No 16
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=52.65 E-value=8.8 Score=32.95 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=25.3
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCccc
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEIS 218 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeIS 218 (332)
+.-|||++.|+|..++.-.+.++++.+.+.+-.+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 55699999999988776667777776555444443
No 17
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=52.33 E-value=8.3 Score=33.68 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=31.1
Q ss_pred ccceEEEeccccccCCCChhHHHHHHHHhCCcccccC
Q 020015 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (332)
Q Consensus 185 ~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 221 (332)
.||||.+.|.|..++.-.+.++++.++..+..+.|+.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 4999999999999999888998888876677776654
No 18
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=45.34 E-value=19 Score=30.35 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.8
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHh-CCcccccCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPAL 222 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPAL 222 (332)
+.+|||++.|+|..++.-.+++.++.+.++ +..+..+..
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 689999999999999888888888887653 566665543
No 19
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=42.42 E-value=24 Score=33.33 Aligned_cols=103 Identities=21% Similarity=0.221 Sum_probs=46.3
Q ss_pred ccccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCCCCCceeeeeeeeecCcceeeeeecccCCccCCCCCCCC
Q 020015 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGP 262 (332)
Q Consensus 183 va~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~~~~p 262 (332)
-..+|++++.|||.-| +++++.++...++ -+||-.=... ...++++...+.. .+ + ...
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~~-~~~~~~~~~~~~~-~~----~-----------~~~ 141 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGRP-SGDRPIEIIHRFN-PN----K-----------SKD 141 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE-E-E----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeeee-ccCccceeecccc-cc----c-----------cCc
Confidence 3578999999999987 6777777776544 2343221100 1112222100000 00 0 000
Q ss_pred CccceEEE-eccccchhHHHHh--hh----hcccCCccccchhhhhhhhhcc
Q 020015 263 PCTGFVEG-MAPVFSRSAWYCA--WH----LIQNDLVHGWGMDMKLGYCAQV 307 (332)
Q Consensus 263 pcTgFVEi-MAPVFSR~Awrcv--wh----miqNDLvhGWGLDf~w~~c~q~ 307 (332)
.+-.|.-+ -.=|+||.+.+.+ |. ..+.+....+.=|..+++|++.
T Consensus 142 ~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~ 193 (252)
T PF02434_consen 142 SGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN 193 (252)
T ss_dssp ----EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH
T ss_pred CceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh
Confidence 01112221 1235788888776 32 2334444567889999999987
No 20
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=41.42 E-value=16 Score=32.15 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=30.1
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 221 (332)
+.+|||++.|.|..++...++++..+....+..+.|+-
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~ 123 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTR 123 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecc
Confidence 58999999999999998888887777655555555553
No 21
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=40.40 E-value=20 Score=31.79 Aligned_cols=125 Identities=21% Similarity=0.135 Sum_probs=71.3
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHH--hCCcccccCCCCCCCceeeeeeeeecCcceeeeeecccCCccCCCCCCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS--EGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEG 261 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~g~~~C~~~~~~ 261 (332)
++||||++.|+|+.++.-.+.+...-... .|+-=+.|-.-+.++.... +..-...+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~---l~~~~~~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSR---LEAAFFNFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHH---HHHHHHhHHHHHHHH------------
Confidence 89999999999999988777777765544 3332222222222211000 000000122111111
Q ss_pred CCccceEEEeccccchhHHHHhhhhcccCCccccchhhhhhhhhccCcccceeeeeeEeeecce
Q 020015 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQVRLLRCVLDKVYQLLIFFR 325 (332)
Q Consensus 262 ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGWGLDf~w~~c~q~~~~k~VVDa~~VvH~~~~ 325 (332)
..-++|+=.|+=.|.|++++..= -++.+.+.-.=||.+++.+.....+-++-..+|+++.+.
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~G--G~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~ 156 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIG--GFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVP 156 (175)
T ss_pred hcCCCceecceeeeEHHHHHHcc--cHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccC
Confidence 11245677788889999998762 234555677789999988877554544544566666554
No 22
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=39.16 E-value=19 Score=28.10 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=25.9
Q ss_pred ccceEEEeccccccCCCChhHH-HHHHHHhCCcccccCC
Q 020015 185 NYDYIFLWDEDLGVENFDPRRY-LEIVKSEGFEISQPAL 222 (332)
Q Consensus 185 ~YDYIflwDdDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 222 (332)
.+|||.+.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 8999999999998887767777 3333344444444443
No 23
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=38.83 E-value=43 Score=31.68 Aligned_cols=95 Identities=14% Similarity=0.247 Sum_probs=53.4
Q ss_pred cCccccchhHHHhhcCC-CCcEEEEEEecCCCCccCccccCCceEEEEEeccccchhcccccCcccccccceEEEecccc
Q 020015 118 GIKQKDNVDAIVRKFLP-ENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDL 196 (332)
Q Consensus 118 G~kqk~~Vd~~v~kf~~-~nF~vmLFhYDg~vd~W~d~ews~~aiHv~a~kqtKWw~akRfLHPdiva~YDYIflwDdDL 196 (332)
..+......++|+...+ ..-.=++....+...--...+|....+-|....+++=-.-.||+ |.---+=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~-p~~~i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFL-PDPEIETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS---TT--SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCc-CccccCcceEEEecCCc
Confidence 45555556666665532 22332333333322222235566666667667777777788886 44445589999999999
Q ss_pred ccCCCChhHHHHHHHHh
Q 020015 197 GVENFDPRRYLEIVKSE 213 (332)
Q Consensus 197 ~vd~f~i~ry~~Ivr~~ 213 (332)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999888888744
No 24
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=38.74 E-value=26 Score=26.60 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=19.0
Q ss_pred ccceEEEeccccccCCCChhHH
Q 020015 185 NYDYIFLWDEDLGVENFDPRRY 206 (332)
Q Consensus 185 ~YDYIflwDdDL~vd~f~i~ry 206 (332)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 7999999999999887777766
No 25
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.72 E-value=29 Score=29.25 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=29.6
Q ss_pred cccceEEEeccccccCCCChhHHHHHH-HHhCCccccc
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIV-KSEGFEISQP 220 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Iv-r~~gLeISQP 220 (332)
+.+|||++.|+|-.++...+++.++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 578999999999999888888888887 4555655544
No 26
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=34.50 E-value=29 Score=30.99 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=34.3
Q ss_pred chhcccccCcccccccceEEEeccc-------cccCCCCh-----------hHHHHHHHHhCCcccccCCCC
Q 020015 171 WWFAKRFLHPDVVSNYDYIFLWDED-------LGVENFDP-----------RRYLEIVKSEGFEISQPALDP 224 (332)
Q Consensus 171 Ww~akRfLHPdiva~YDYIflwDdD-------L~vd~f~i-----------~ry~~Ivr~~gLeISQPALd~ 224 (332)
=|+++||+-|+- +++|+.++. .+--.||+ -.|=-++++||| .+|||..
T Consensus 15 ~WLIrRFIDp~A----~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~ 80 (135)
T PF09828_consen 15 PWLIRRFIDPEA----EFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALAR 80 (135)
T ss_pred HHHHHHhcCCCc----eEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHH
Confidence 399999998763 577777766 12223444 346678999999 8999976
No 27
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.61 E-value=48 Score=27.27 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=26.0
Q ss_pred cccceEEEeccccccCCCChhHHHHHHH-HhCCccc
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVK-SEGFEIS 218 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr-~~gLeIS 218 (332)
+..|||++.|+|..++.-.+.+.++... ..+..+.
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v 109 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVV 109 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEE
Confidence 5689999999999999888888884443 3344443
No 28
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.38 E-value=35 Score=29.09 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=27.6
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccc
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQ 219 (332)
+.+|||++.|+|..++.-.++++++.+.+.+-...+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVA 116 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEe
Confidence 579999999999999888888888766555444333
No 29
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=31.77 E-value=57 Score=30.52 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=51.8
Q ss_pred EEEeecCcccc-----chhHHHh---hc-CCCCcEEEEEEecCCCCccC-cc-cc--CCceE-EEEEeccccchhccccc
Q 020015 113 LAIPAGIKQKD-----NVDAIVR---KF-LPENFTVILFHYDGDVNAWR-GL-DW--SNKAI-HIAAQNQTKWWFAKRFL 178 (332)
Q Consensus 113 la~~VG~kqk~-----~Vd~~v~---kf-~~~nF~vmLFhYDg~vd~W~-d~-ew--s~~ai-Hv~a~kqtKWw~akRfL 178 (332)
+++||..+... .+..++. ++ +..++.|++..++.. ++++ ++ +. ....+ .+....+.+.|-.-+-.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 67888888742 3322232 32 346788888887664 3341 11 11 11222 12212122222111111
Q ss_pred C-cccccccceEEEeccccccCCCChhHHHH
Q 020015 179 H-PDVVSNYDYIFLWDEDLGVENFDPRRYLE 208 (332)
Q Consensus 179 H-Pdiva~YDYIflwDdDL~vd~f~i~ry~~ 208 (332)
+ -=-.+.-|||+++|-|+-++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1 11227899999999999999888888888
No 30
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.09 E-value=36 Score=29.12 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=31.7
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCCCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 224 (332)
+..|||.+.|+|..++...+++.+......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 45899999999999998888888777776666666655433
No 31
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=30.86 E-value=24 Score=27.56 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=19.1
Q ss_pred cccccccceEEEeccccccCCCChhHHHHHHHHhC
Q 020015 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (332)
Q Consensus 180 Pdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~g 214 (332)
..+..+|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4778999999999964 455566666
No 32
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.67 E-value=43 Score=28.22 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=20.3
Q ss_pred cccceEEEeccccccCCCChhHHHHH
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEI 209 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~I 209 (332)
+.+|||++.|+|...+.-.+.++++.
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHH
Confidence 67999999999977766656666665
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=29.73 E-value=31 Score=30.40 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=30.4
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPAL 222 (332)
+..|||++.|+|...+...+.++++.++..+..+.++..
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 146 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGEL 146 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEE
Confidence 456999999999999988888888887655666655544
No 34
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.59 E-value=71 Score=35.14 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=69.0
Q ss_pred ecCccccchhHHHhhcCCCCcEEEEEEecCC-------------------C-------CccCccccCCceEEEEEecccc
Q 020015 117 AGIKQKDNVDAIVRKFLPENFTVILFHYDGD-------------------V-------NAWRGLDWSNKAIHIAAQNQTK 170 (332)
Q Consensus 117 VG~kqk~~Vd~~v~kf~~~nF~vmLFhYDg~-------------------v-------d~W~d~ews~~aiHv~a~kqtK 170 (332)
+|..-|+.-.++=-..+.++|+|+++-|.-. | +--+|+-|-+-.+-|.+..-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 3555566666666677789999999988532 2 2335788877766677666666
Q ss_pred chhcccccCcccccccceEEEeccccccCCCChhHHHHHHHHh
Q 020015 171 WWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSE 213 (332)
Q Consensus 171 Ww~akRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~ 213 (332)
==.-+|||-.|.++ =|.|.-.|||..+-|..|-==|+.=|+.
T Consensus 711 NsLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~ 752 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWREN 752 (907)
T ss_pred ccccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhc
Confidence 66889999888775 6999999999999888775444444444
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=27.65 E-value=56 Score=32.07 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=29.4
Q ss_pred cceEEEeccccccCCCChhHHHHHHHHhCCccc
Q 020015 186 YDYIFLWDEDLGVENFDPRRYLEIVKSEGFEIS 218 (332)
Q Consensus 186 YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeIS 218 (332)
+|||++.|.|..++...+++.++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776554
No 36
>PHA03165 hypothetical protein; Provisional
Probab=26.87 E-value=49 Score=25.14 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhhhhccCCCcccccccc
Q 020015 30 FMAIMCTVMLFVVYRTTYYQYKQTEMEAKFSPFDISKGSRF 70 (332)
Q Consensus 30 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (332)
...+++.+++|++|..+- ...+||++.-.++|
T Consensus 23 yilvvafvlaflvysdfl---------snlspfgeilsspc 54 (57)
T PHA03165 23 YILVVAFVLAFLVYSDFL---------SNLSPFGEILSSPC 54 (57)
T ss_pred ehhHHHHHHHHHHHHHHH---------hccCchhhhhcCcc
Confidence 456778889999999887 56778877655543
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=26.64 E-value=59 Score=28.92 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=29.4
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHh--CCcccccC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE--GFEISQPA 221 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~--gLeISQPA 221 (332)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 688999999999999988888888877643 44444543
No 38
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.34 E-value=1.2e+02 Score=27.78 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=16.9
Q ss_pred ecchhhHHHHHHHHHHHHhhhcch
Q 020015 24 KMKQLQFMAIMCTVMLFVVYRTTY 47 (332)
Q Consensus 24 ~~~~~~~~~~~~~~~~f~~~~~~~ 47 (332)
+.-+.-++++.++++++|+.+++.
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 444455777778888888888765
No 39
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=24.96 E-value=95 Score=31.48 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=64.1
Q ss_pred CccEEEEeecCccccchhHHHhhcCCCCcEEEE-EEecCCCCccCccccCCceEEEEEeccccchhcccccCcccc
Q 020015 109 NRNLLAIPAGIKQKDNVDAIVRKFLPENFTVIL-FHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVV 183 (332)
Q Consensus 109 ~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmL-FhYDg~vd~W~d~ews~~aiHv~a~kqtKWw~akRfLHPdiv 183 (332)
.+.|++--+|.--.+.++.++.++++.+|..++ +-|-+....=....||-+.--+....-.-|-..+-|+||++.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchh
Confidence 557888999999999999999999988887776 677777666678889999999998888889999999998664
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=24.04 E-value=52 Score=27.18 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=19.7
Q ss_pred cccceEEEeccccccCCCChhHHHHH
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEI 209 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~I 209 (332)
+.+|||++.|+|..++..-+.+.++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 67999999999998866555555543
No 41
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=23.86 E-value=1.2e+02 Score=27.06 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=37.5
Q ss_pred cCCCCCCceecCCCcceecCCCCCCCCCccCCCCCc-cEEEEeecCcccc---chh----------HHHhhcCC------
Q 020015 75 LKSLPRGIVQARSDLELRPLWSTSSSRKKFGVYSNR-NLLAIPAGIKQKD---NVD----------AIVRKFLP------ 134 (332)
Q Consensus 75 ~e~Lp~giv~~~sd~~lr~Lwg~~~~~~~~~~~~~k-~Lla~~VG~kqk~---~Vd----------~~v~kf~~------ 134 (332)
-++||+.-|.+-+|-...+|-- .. +...+ .|++++--+.+.. .++ ..+++|..
T Consensus 33 G~Rlp~~~v~r~aD~~p~~l~~----~l---~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~ 105 (169)
T PF07976_consen 33 GRRLPSAKVVRHADGNPVHLQD----DL---PSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPD 105 (169)
T ss_dssp TCB----EEEETTTTEEEEGGG----G-----SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TT
T ss_pred ccccCCceEEEEcCCCChhHhh----hc---ccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Confidence 3589999999999988877732 11 12233 4555553333322 122 34556654
Q ss_pred CCcEEEEEEecCCCCccCccccC
Q 020015 135 ENFTVILFHYDGDVNAWRGLDWS 157 (332)
Q Consensus 135 ~nF~vmLFhYDg~vd~W~d~ews 157 (332)
.-||++|+| -..++++||.
T Consensus 106 s~~~~~~I~----~~~~~~~e~~ 124 (169)
T PF07976_consen 106 SVFDVLLIH----SSPRDEVELF 124 (169)
T ss_dssp SSEEEEEEE----SS-CCCS-GG
T ss_pred CeeEEEEEe----cCCCCceeHH
Confidence 239999999 3456777775
No 42
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=23.13 E-value=68 Score=28.73 Aligned_cols=108 Identities=16% Similarity=0.221 Sum_probs=59.0
Q ss_pred CCccEEEEeecCccccchhHHHh---h-cC-CCCcEEEEEEecCCCCccCcc--cc----CCceEEEEE--eccccchhc
Q 020015 108 SNRNLLAIPAGIKQKDNVDAIVR---K-FL-PENFTVILFHYDGDVNAWRGL--DW----SNKAIHIAA--QNQTKWWFA 174 (332)
Q Consensus 108 ~~k~Lla~~VG~kqk~~Vd~~v~---k-f~-~~nF~vmLFhYDg~vd~W~d~--ew----s~~aiHv~a--~kqtKWw~a 174 (332)
.++.-|++|+ ++....+..+++ + .. ..++.|++.. ||+.|+=.++ ++ ....+++.. .++++---.
T Consensus 8 ~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiivvD-dgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 8 AMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIVVD-DGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred CceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEEEe-CCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 4567777887 455555544332 2 11 1267666664 7776631110 11 111233322 223331100
Q ss_pred ccccCcccccccceEEEeccccccCCCChhHHHHHHHHhCCccccc
Q 020015 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQP 220 (332)
Q Consensus 175 kRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQP 220 (332)
+.-+ -.+..|||++.|.|...+.-.++++++.+.+.+..+...
T Consensus 86 n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 86 IHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred HHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 1100 135789999999999998888899998887777666544
No 43
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=22.00 E-value=47 Score=29.66 Aligned_cols=11 Identities=45% Similarity=0.923 Sum_probs=9.6
Q ss_pred cEEEEEEecCC
Q 020015 137 FTVILFHYDGD 147 (332)
Q Consensus 137 F~vmLFhYDg~ 147 (332)
-+-+||||-|.
T Consensus 90 ~~RvLFHYnGh 100 (154)
T PF14538_consen 90 DERVLFHYNGH 100 (154)
T ss_pred CceEEEEECCC
Confidence 49999999985
No 44
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=45 Score=33.57 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=33.5
Q ss_pred CCCCCCCCCccceEEEeccccchhHHHHhhhhcccCCcccc
Q 020015 255 CTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGW 295 (332)
Q Consensus 255 C~~~~~~ppcTgFVEiMAPVFSR~AwrcvwhmiqNDLvhGW 295 (332)
|+-+..+.-.|.|||-+-|||++.+.+-+-.-.+-.++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 44445566678999999999999999888877777788898
No 45
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=20.75 E-value=2e+02 Score=28.64 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=63.1
Q ss_pred cEEEEeecCccccchhHHHh--hcCCCCcEEEEEEecCCCCccCc---ccc-------CCceEEEEEeccc---cchh--
Q 020015 111 NLLAIPAGIKQKDNVDAIVR--KFLPENFTVILFHYDGDVNAWRG---LDW-------SNKAIHIAAQNQT---KWWF-- 173 (332)
Q Consensus 111 ~Lla~~VG~kqk~~Vd~~v~--kf~~~nF~vmLFhYDg~vd~W~d---~ew-------s~~aiHv~a~kqt---KWw~-- 173 (332)
.|..+++|..-......+.+ .+....+.+.+|.-| ...+|.. =+| ....+|-.....+ .|-.
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n~~~l~Fhi~~d~-~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFSQKPLRFHIFAED-QLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhCCCCEEEEEEECC-ccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 46778888874322222222 233457888888844 3333332 122 2334443332222 3522
Q ss_pred ----cccccCcccccccceEEEeccccccCCCChhHHHHHHHHhC
Q 020015 174 ----AKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (332)
Q Consensus 174 ----akRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~g 214 (332)
..|++-|+++.++|-|.-.|-|+-+ .-++++++++.+..+
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3467789999999999999999998 678999999865553
No 46
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.30 E-value=1.3e+02 Score=25.09 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=4.1
Q ss_pred chhhHHHHHH
Q 020015 26 KQLQFMAIMC 35 (332)
Q Consensus 26 ~~~~~~~~~~ 35 (332)
|.+.+++|+-
T Consensus 4 K~~llL~l~L 13 (95)
T PF07172_consen 4 KAFLLLGLLL 13 (95)
T ss_pred hHHHHHHHHH
Confidence 4444444433
No 47
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=20.20 E-value=1e+02 Score=25.48 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=29.2
Q ss_pred CcchhhhhhhhhcCCCcccccceecc---hhhHHHHHHHHHHHHhhhcchhh
Q 020015 1 MKSIKTWRLLKRNSFSDGVKFGVKMK---QLQFMAIMCTVMLFVVYRTTYYQ 49 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~ 49 (332)
|.|+-.+-+.-..+-.....+++... .+-|..++|+.+++++.|.+.+-
T Consensus 1 M~s~~~~~s~~~~s~~~~~~~~~~~eqkt~faFV~~L~~fL~~liVRCfrIl 52 (81)
T PF11057_consen 1 MSSTYCLPSPLPMSGNPLSASSLDLEQKTAFAFVGLLCLFLGLLIVRCFRIL 52 (81)
T ss_pred CCCcccCCCCcccCCCCCcccccccccceeehHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333344444333 34588899999999999999854
No 48
>PLN02867 Probable galacturonosyltransferase
Probab=20.05 E-value=40 Score=36.08 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=29.8
Q ss_pred ccccCcccccccceEEEeccccccCCCChhHHHHH
Q 020015 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEI 209 (332)
Q Consensus 175 kRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~I 209 (332)
-||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 46667999999999999999999977 88888876
Done!