Query 020015
Match_columns 332
No_of_seqs 131 out of 152
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 76.2 7.1 0.00024 32.9 7.0 38 184-221 87-125 (255)
2 1xhb_A Polypeptide N-acetylgal 65.6 8.6 0.0003 36.3 5.7 39 184-222 113-151 (472)
3 3f1y_A Mannosyl-3-phosphoglyce 59.7 9.1 0.00031 36.6 4.7 109 108-221 93-217 (387)
4 3bcv_A Putative glycosyltransf 58.9 6.7 0.00023 32.6 3.3 109 108-221 4-120 (240)
5 2ffu_A Ppgalnact-2, polypeptid 35.8 22 0.00074 34.1 3.1 39 184-222 145-183 (501)
6 1omz_A Alpha-1,4-N-acetylhexos 31.7 23 0.0008 33.5 2.5 103 109-213 28-134 (293)
7 4fix_A UDP-galactofuranosyl tr 31.2 17 0.00059 37.2 1.7 37 185-221 268-305 (657)
8 2c0n_A A197; thermophil protei 28.4 20 0.00068 32.6 1.4 39 173-218 44-85 (203)
9 2d7i_A Polypeptide N-acetylgal 24.7 1.1E+02 0.0039 30.1 6.2 110 108-222 111-233 (570)
10 2nxv_A ATP synthase subunits r 23.4 54 0.0018 28.4 3.2 29 184-212 73-101 (249)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=76.18 E-value=7.1 Score=32.88 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=31.9
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHh-CCcccccC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPA 221 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPA 221 (332)
+..|||++.|+|..++...++++++.++++ +..+..+.
T Consensus 87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEec
Confidence 688999999999999988899999999876 66665554
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=65.60 E-value=8.6 Score=36.34 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=33.3
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPAL 222 (332)
+..|||++.|+|..++.--++++++.+++..-.+.-|.+
T Consensus 113 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~ 151 (472)
T 1xhb_A 113 SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPII 151 (472)
T ss_dssp CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred ccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeee
Confidence 678999999999999999999999999887655555654
No 3
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=59.71 E-value=9.1 Score=36.60 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCccEEEEeecCccccchhHHHhhcC------CCCcEEEEEEecCCCCccCcc--ccCCceEEEE------Eeccccchh
Q 020015 108 SNRNLLAIPAGIKQKDNVDAIVRKFL------PENFTVILFHYDGDVNAWRGL--DWSNKAIHIA------AQNQTKWWF 173 (332)
Q Consensus 108 ~~k~Lla~~VG~kqk~~Vd~~v~kf~------~~nF~vmLFhYDg~vd~W~d~--ews~~aiHv~------a~kqtKWw~ 173 (332)
.++..|++|+=+. .+++..+++... ..++.|++.. ||+.|+=.++ +...+.++.. ..++.|-.-
T Consensus 93 ~p~vSVVIP~yNe-~~~l~~~l~sl~~~l~~~~~~~EIIVVD-DgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A 170 (387)
T 3f1y_A 93 GLTVSAVLPSRNV-ADTVGGIIDEIHALNERAPLIDQILVVD-ADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDA 170 (387)
T ss_dssp TCCEEEEEEESSC-TTTHHHHHHHHHHHHHHSCCCSEEEEEE-CSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHH
T ss_pred CCeEEEEEEcCCC-HHHHHHHHHHHHHHHhcCCCCeEEEEEc-CcCCccHHHHHHHhCchhcccceeEecCCccCCHHHH
Confidence 5677888888544 566666555432 2468777665 8887754332 1112211110 013333211
Q ss_pred cccccCcccccccceEEEeccccc-cCCCChhHHHHHHHHh-CCcccccC
Q 020015 174 AKRFLHPDVVSNYDYIFLWDEDLG-VENFDPRRYLEIVKSE-GFEISQPA 221 (332)
Q Consensus 174 akRfLHPdiva~YDYIflwDdDL~-vd~f~i~ry~~Ivr~~-gLeISQPA 221 (332)
.+.=+ -.+.+|||++.|.|.. ++.-.+.++++.+.+. +..+....
T Consensus 171 ~n~G~---~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~ 217 (387)
T 3f1y_A 171 MWRAL---SVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAA 217 (387)
T ss_dssp HHHHT---TTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEE
T ss_pred HHHHH---HhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEe
Confidence 11111 1257999999999999 8999999999988765 55555443
No 4
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=58.95 E-value=6.7 Score=32.60 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=59.7
Q ss_pred CCccEEEEeecCccccchhHHHhhcC---CCCcEEEEEEecCCCCccCcc--ccC--CceEEEEE-eccccchhcccccC
Q 020015 108 SNRNLLAIPAGIKQKDNVDAIVRKFL---PENFTVILFHYDGDVNAWRGL--DWS--NKAIHIAA-QNQTKWWFAKRFLH 179 (332)
Q Consensus 108 ~~k~Lla~~VG~kqk~~Vd~~v~kf~---~~nF~vmLFhYDg~vd~W~d~--ews--~~aiHv~a-~kqtKWw~akRfLH 179 (332)
.++.-|++|+= +..+.+.++++-.. ..+|.|++.. ||..|+=.++ ++. ..-+++.. .++++= .+ |..
T Consensus 4 ~p~vsViIp~y-n~~~~l~~~l~Sl~~q~~~~~eiIvvD-d~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~~-~a-~N~- 78 (240)
T 3bcv_A 4 IPKVSVIVPIY-NVEKYLDQCVQALLAQTLSDIEIILID-DESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-MA-CNS- 78 (240)
T ss_dssp CCSEEEEEEES-SCTTTHHHHHHHHHTCSSSSEEEEEEE-CCCSSSHHHHHHHHHHHCSSEEEEECCCCCHH-HH-HHH-
T ss_pred CCcEEEEEecC-CCHHHHHHHHHHHHhCcCCCeEEEEEE-CCCCcCHHHHHHHHHhhCCCEEEEECCCCChH-HH-HHH-
Confidence 34556677763 33445544444321 2467777654 7776642111 010 01133322 222211 11 100
Q ss_pred cccccccceEEEeccccccCCCChhHHHHHHHHhCCcccccC
Q 020015 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (332)
Q Consensus 180 Pdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 221 (332)
-=-.+..|||++.|+|..++...++++++.+++.+.++...+
T Consensus 79 g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 79 GLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp HHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred HHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 001256799999999999999999999999998777666544
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=35.84 E-value=22 Score=34.10 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=34.9
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHHhCCcccccCC
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPAL 222 (332)
+..|||++.|+|..++.-.++++++.+++..-.+..|.+
T Consensus 145 A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~ 183 (501)
T 2ffu_A 145 AQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPII 183 (501)
T ss_dssp CCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred cCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeee
Confidence 678999999999999999999999999988777777764
No 6
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=31.68 E-value=23 Score=33.50 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=60.6
Q ss_pred CccEEEEeecCccccchhHHHhhcCC-CCcEEEEEEecCCCCccCccccCC---ceEEEEEeccccchhcccccCccccc
Q 020015 109 NRNLLAIPAGIKQKDNVDAIVRKFLP-ENFTVILFHYDGDVNAWRGLDWSN---KAIHIAAQNQTKWWFAKRFLHPDVVS 184 (332)
Q Consensus 109 ~k~Lla~~VG~kqk~~Vd~~v~kf~~-~nF~vmLFhYDg~vd~W~d~ews~---~aiHv~a~kqtKWw~akRfLHPdiva 184 (332)
.++-+.|-+ ++......++|+.... ..-+=++....+.-..--+..|.. .++.|....+.+==+-.||+ |.-.-
T Consensus 28 ~~FTvvi~t-y~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~nsLnnRF~-p~~~i 105 (293)
T 1omz_A 28 DSFTLIMQT-YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQ-VFPEV 105 (293)
T ss_dssp TCEEEEEEE-SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGS-CCTTC
T ss_pred CceEEEEEe-ecccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCCchhhccC-CCccC
Confidence 345444443 3344555666665433 334444444433211122223422 23445555555545688886 44456
Q ss_pred ccceEEEeccccccCCCChhHHHHHHHHh
Q 020015 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSE 213 (332)
Q Consensus 185 ~YDYIflwDdDL~vd~f~i~ry~~Ivr~~ 213 (332)
+-|+||..|||+.+..-+++.=|+.-+++
T Consensus 106 ~T~AVLslDDDv~l~~~el~faF~vWr~~ 134 (293)
T 1omz_A 106 ETNAVLMVDDDTLISAQDLVFAFSIWQQF 134 (293)
T ss_dssp CSSEEEEECTTEEECHHHHHHHHHHHTTS
T ss_pred CcCEEEEEcCCCCCCHHHHHHHHHHHHHC
Confidence 78999999999999999999888888754
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=31.23 E-value=17 Score=37.21 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=30.8
Q ss_pred ccceEEEeccccccCCCChhHHHHHHHHh-CCcccccC
Q 020015 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPA 221 (332)
Q Consensus 185 ~YDYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPA 221 (332)
.+|||++.|+|..++...++++++.+++. ...+.+|.
T Consensus 268 ~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~ 305 (657)
T 4fix_A 268 DCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQ 305 (657)
T ss_dssp CCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEE
T ss_pred CCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeE
Confidence 69999999999999999999999999876 34455554
No 8
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=28.40 E-value=20 Score=32.65 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=27.8
Q ss_pred hcccccCcccccccceEEEeccc---cccCCCChhHHHHHHHHhCCccc
Q 020015 173 FAKRFLHPDVVSNYDYIFLWDED---LGVENFDPRRYLEIVKSEGFEIS 218 (332)
Q Consensus 173 ~akRfLHPdiva~YDYIflwDdD---L~vd~f~i~ry~~Ivr~~gLeIS 218 (332)
.+.+||- -..|||+++.|-| ++.+..++-|++ +.|-+|.
T Consensus 44 lv~~Fl~---~~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV 85 (203)
T 2c0n_A 44 ALDMFLE---MKDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVV 85 (203)
T ss_dssp HHHHHHH---CTTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEE
T ss_pred HHHHHHh---cCCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEE
Confidence 4455542 2469999999999 888777777777 4565554
No 9
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=24.70 E-value=1.1e+02 Score=30.06 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCccEEEEeecCcc----ccchhHHHhhcCCCC--cEEEEEEecCCCCcc-Cc-c-ccC--CceEEEEEe--ccccchhc
Q 020015 108 SNRNLLAIPAGIKQ----KDNVDAIVRKFLPEN--FTVILFHYDGDVNAW-RG-L-DWS--NKAIHIAAQ--NQTKWWFA 174 (332)
Q Consensus 108 ~~k~Lla~~VG~kq----k~~Vd~~v~kf~~~n--F~vmLFhYDg~vd~W-~d-~-ews--~~aiHv~a~--kqtKWw~a 174 (332)
.++.-|++|+=... ...++++++.- ..+ +.|++.. ||+.|+= .+ + ++. ..-|++... +..+ +
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt-~~~~~~EIIVVD-DgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~G~---~ 185 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRS-PPELVAEIVLVD-DFSDREHLKKPLEDYMALFPSVRILRTKKREGL---I 185 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHS-CGGGEEEEEEEE-CSCCCGGGTHHHHHHHTTSTTEEEEECSSCCCH---H
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcC-CccCcEEEEEEE-CCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCH---H
Confidence 45667777775543 22344555432 233 3666654 7776654 21 1 010 112444322 1221 1
Q ss_pred ccccCcccccccceEEEeccccccCCCChhHHHHHHHHhCCcccccCC
Q 020015 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (332)
Q Consensus 175 kRfLHPdiva~YDYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPAL 222 (332)
.-...-=-.+.-|||++.|+|..++..-++++++.+++..-.+..|.+
T Consensus 186 ~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i 233 (570)
T 2d7i_A 186 RTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMI 233 (570)
T ss_dssp HHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeee
Confidence 110001112568999999999999999999999999876544444543
No 10
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=23.41 E-value=54 Score=28.38 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=26.6
Q ss_pred cccceEEEeccccccCCCChhHHHHHHHH
Q 020015 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS 212 (332)
Q Consensus 184 a~YDYIflwDdDL~vd~f~i~ry~~Ivr~ 212 (332)
+.-|||++.|.|..++.-.++++++.+++
T Consensus 73 A~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 73 CKGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp CCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 56899999999999999999999999887
Done!