Query 020017
Match_columns 332
No_of_seqs 175 out of 256
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03181 BURP: BURP domain; I 100.0 4.9E-88 1.1E-92 621.5 19.8 209 118-327 3-216 (216)
2 PF10950 DUF2775: Protein of u 96.1 0.0028 6.1E-08 53.5 1.5 25 25-49 3-27 (108)
3 PF08727 P3A: Poliovirus 3A pr 62.5 2 4.4E-05 32.6 -0.5 16 33-48 11-26 (57)
4 KOG0022 Alcohol dehydrogenase, 58.7 7.9 0.00017 39.1 2.7 30 266-301 30-59 (375)
5 smart00167 VPS9 Domain present 25.8 20 0.00044 30.5 -0.3 35 183-217 75-109 (117)
6 PF11323 DUF3125: Protein of u 24.0 48 0.001 24.6 1.4 38 286-326 9-50 (50)
7 COG1064 AdhP Zn-dependent alco 23.3 35 0.00077 34.3 0.8 29 280-309 34-62 (339)
8 COG5401 Spore germination prot 22.4 94 0.002 30.1 3.4 45 121-165 104-148 (250)
9 COG1062 AdhC Zn-dependent alco 21.7 1.1E+02 0.0023 31.4 3.7 30 266-295 15-48 (366)
10 PF10731 Anophelin: Thrombin i 17.0 91 0.002 24.2 1.6 14 6-19 5-18 (65)
No 1
>PF03181 BURP: BURP domain; InterPro: IPR004873 The BURP domain is a ~230-residue module, which has been named for the four members of the group initially identified, BNM2, USP, RD22, and PG1beta. It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but also by the overall similarity in their modular construction. The BURP domain proteins consists of either three or four modules: (i) an N-terminal hydrophobic domain - a presumptive transit peptide, joined to (ii) a short conserved segment or other short segment, (iii) an optional segment consisting of repeated units which is unique to each member, and (iv) the C-terminal BURP domain. Although the BURP domain proteins share primary structural features, their expression patterns and the conditions under which they are expressed differ. The presence of the conserved BURP domain in diverse plant proteins suggests an important and fundamental functional role for this domain []. It is possible that the BURP domain represents a general motif for localization of proteins within the cell wall matrix. The other structural domains associated with the BURP domain may specify other target sites for intermolecular interactions []. Some proteins known to contain a BURP domain are listed below [, , ]: Brassica protein BNM2, which is expressed during the induction of microspore embryogenesis. Field bean USPs, abundant non-storage seed proteins with unknown function. Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is up-regulated by aluminium. Soybean seed coat BURP-domain protein 1 (SCB1). It might play a role in the differentiation of the seed coat parenchyma cells. Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the beta-subunit of polygalacturonase isozyme 1 (PG1), which is expressed in ripening fruits. Cereal RAFTIN. It is essential specifically for the maturation phase of pollen development.
Probab=100.00 E-value=4.9e-88 Score=621.46 Aligned_cols=209 Identities=66% Similarity=1.124 Sum_probs=201.3
Q ss_pred eee-cCCCCCceeeecccCCCC--CCCccchhhhccCCCCCCChhHHhhhcCCCCCCHHHHHHHHHHHHccCCCCCCccc
Q 020017 118 VYV-GDLHPGMKMNLHFTQTSN--GATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQK 194 (332)
Q Consensus 118 ~~~-~dL~pG~km~l~f~~~~~--~~~FLPR~vAdsIPfSs~kl~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~p~~~GE~K 194 (332)
||+ +||++|++|+|+|++..+ .++||||++||+||||+++|++||++|+|+++|+||++|++||++||.++++||+|
T Consensus 3 fF~e~dL~~G~~m~l~f~~~~~~~~~~fLpr~~A~siPfss~~l~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~~~~~GE~k 82 (216)
T PF03181_consen 3 FFLEKDLHPGKKMPLYFPKSDNSAKRPFLPRQVADSIPFSSSKLPEILQMFSIPPGSPMAKAMKNTLEECESPPIKGETK 82 (216)
T ss_pred ccCHHHCCCCceeeecCCCCCCCcccccCCHHHhccCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCcCc
Confidence 344 999999999999998764 68999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHhhhhcCC-ccEEEeecccCCCcceeeEEEeeeeeccC-CcceeeccccCCceeeeccccCceeEEEEe
Q 020017 195 YCATSLESMIDFSTSKLGK-SVQAISTEVKKGTKMQTYTIAAGVKQMAA-DKSVVCHKQNYPYAVFYCHATQTTRAYMVP 272 (332)
Q Consensus 195 ~CaTSLESMvdFa~S~LG~-~v~a~sT~~~~~~~~q~Ytv~~~Vk~i~g-~k~V~CH~~~yPyaVfyCH~~~~T~vY~V~ 272 (332)
+||||||||+||++|+||+ |++++||++..+.+.|+|+|. +|++++| +++|+||+|+|||+|||||.++.||+|+|+
T Consensus 83 ~CaTSLESMvdF~~s~LG~~~v~a~st~~~~~~~~~~y~V~-~v~~i~~~~~~V~CH~~~yPYaVyyCH~~~~t~~y~V~ 161 (216)
T PF03181_consen 83 YCATSLESMVDFAVSKLGTRNVRALSTEVPKSTPLQNYTVE-GVKKIGGGDKSVVCHKMPYPYAVYYCHSIPPTRVYMVP 161 (216)
T ss_pred cCcCCHHHHHHHHHHhcCCCccEEEeccccCCCCCccEEEE-eeeeecCCCceEEEcccCCceeEEEeeecCceeEEEEE
Confidence 9999999999999999997 899999999777889999996 8999987 899999999999999999999999999999
Q ss_pred eecCCCcceeeEeeeeccCCCCCCCchhhhhhccCCCCcceeeeecCCcEEEeeC
Q 020017 273 LEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 327 (332)
Q Consensus 273 L~g~dG~~~~AvAVCH~DTS~Wnp~H~aF~~L~vkPG~~pVCHfl~~~~ivWvp~ 327 (332)
|+|+||++++||||||+|||.|||+|+||++||+|||++|||||+++|+|+||||
T Consensus 162 l~g~dg~~~~avavCH~DTS~W~p~h~aF~~L~vkPG~~~VCHf~~~~~ivWv~~ 216 (216)
T PF03181_consen 162 LVGEDGTKVEAVAVCHLDTSGWNPDHPAFQVLGVKPGTVPVCHFLPNDHIVWVPN 216 (216)
T ss_pred EeecCCceEEEEEEEecCCCCCCcchHHHHHhCCCCCCcceEEEeeCCeEEEccC
Confidence 9999999999999999999999999999999999999999999999999999997
No 2
>PF10950 DUF2775: Protein of unknown function (DUF2775); InterPro: IPR024489 This eukaryotic family includes a number of plant organ-specific proteins. While their function is unknown, their predicted amino acid sequence suggests that these proteins could be exported and glycosylated [].
Probab=96.06 E-value=0.0028 Score=53.53 Aligned_cols=25 Identities=44% Similarity=0.910 Sum_probs=22.9
Q ss_pred hhhhhhhcCCCCCccHHHHhhcCCC
Q 020017 25 PELYWKTVLPNSPMPKAVKDLLQPD 49 (332)
Q Consensus 25 ~e~YW~s~lP~TPmPkai~~Ll~p~ 49 (332)
...||+.|+=..|||+||++||+.+
T Consensus 3 ~geYWK~vMKDqpMPeaIqgLl~~~ 27 (108)
T PF10950_consen 3 LGEYWKDVMKDQPMPEAIQGLLNQD 27 (108)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHhc
Confidence 4689999999999999999999864
No 3
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=62.51 E-value=2 Score=32.62 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=11.4
Q ss_pred CCCCCccHHHHhhcCC
Q 020017 33 LPNSPMPKAVKDLLQP 48 (332)
Q Consensus 33 lP~TPmPkai~~Ll~p 48 (332)
+++||+|.+|.|||+.
T Consensus 11 ~~~~P~P~~I~DLL~S 26 (57)
T PF08727_consen 11 VEETPPPPAIADLLRS 26 (57)
T ss_dssp SSS--SS-TTHHHHHH
T ss_pred ccCCCCCHHHHHHHHh
Confidence 5899999999999964
No 4
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.69 E-value=7.9 Score=39.07 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=22.5
Q ss_pred eeEEEEeeecCCCcceeeEeeeeccCCCCCCCchhh
Q 020017 266 TRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAF 301 (332)
Q Consensus 266 T~vY~V~L~g~dG~~~~AvAVCH~DTS~Wnp~H~aF 301 (332)
-++++|.+ ++.+.++||+|-..|+-+++.+
T Consensus 30 Pka~EVRI------KI~~t~vCHTD~~~~~g~~~~~ 59 (375)
T KOG0022|consen 30 PKAHEVRI------KILATGVCHTDAYVWSGKDPEG 59 (375)
T ss_pred CCCceEEE------EEEEEeeccccceeecCCCccc
Confidence 45566655 4789999999999999775443
No 5
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=25.85 E-value=20 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.7
Q ss_pred HccCCCCCCcccccccchhHHHHHhhhhcCCccEE
Q 020017 183 ECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQA 217 (332)
Q Consensus 183 ~Ce~p~~~GE~K~CaTSLESMvdFa~S~LG~~v~a 217 (332)
.|...-..||.-||.|++|+-++|..+..++++..
T Consensus 75 f~~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~ 109 (117)
T smart00167 75 FLEPSLLTGEGGYYLTSLSAALALIKGLTEAHALP 109 (117)
T ss_pred HCCccccccHHHHHHHHHHHHHHHHHHCCHHhCCc
Confidence 44444578999999999999999998877665543
No 6
>PF11323 DUF3125: Protein of unknown function (DUF3125); InterPro: IPR021472 This family of proteins with unknown function appears to be restricted to Staphylococcus.
Probab=23.99 E-value=48 Score=24.65 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=30.9
Q ss_pred eeeccC----CCCCCCchhhhhhccCCCCcceeeeecCCcEEEee
Q 020017 286 VCHTDT----SAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 326 (332)
Q Consensus 286 VCH~DT----S~Wnp~H~aF~~L~vkPG~~pVCHfl~~~~ivWvp 326 (332)
+|++-| ..|..+ |-+|+-.|-.+--|++-..-.++|+|
T Consensus 9 r~~~p~~~~~~~~e~~---fS~Lga~~q~a~yckl~f~~~L~~~P 50 (50)
T PF11323_consen 9 RCPTPTCIVCRNWESN---FSMLGAHFQSANYCKLNFPRLLCWGP 50 (50)
T ss_pred cCCCCceeeeeeeccc---chhhccccceeeeEEecceeEEEecC
Confidence 455544 578775 88999998888999999999999987
No 7
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=23.31 E-value=35 Score=34.30 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=20.8
Q ss_pred ceeeEeeeeccCCCCCCCchhhhhhccCCC
Q 020017 280 KAKAAAVCHTDTSAWNPKHLAFQVLKVKPG 309 (332)
Q Consensus 280 ~~~AvAVCH~DTS~Wnp~H~aF~~L~vkPG 309 (332)
++++.+|||+|-..|.-+-+ ...|-+-||
T Consensus 34 ~v~~~GVChsDlH~~~G~~~-~~~~P~ipG 62 (339)
T COG1064 34 KVEACGVCHTDLHVAKGDWP-VPKLPLIPG 62 (339)
T ss_pred EEEEEeecchhhhhhcCCCC-CCCCCccCC
Confidence 58999999999999986543 333445555
No 8
>COG5401 Spore germination protein [General function prediction only]
Probab=22.36 E-value=94 Score=30.14 Aligned_cols=45 Identities=18% Similarity=0.402 Sum_probs=38.2
Q ss_pred cCCCCCceeeecccCCCCCCCccchhhhccCCCCCCChhHHhhhc
Q 020017 121 GDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQF 165 (332)
Q Consensus 121 ~dL~pG~km~l~f~~~~~~~~FLPR~vAdsIPfSs~kl~~iL~~F 165 (332)
+|..+|+-++++|.+..+...|+|..+.-.++.+...|.+.|+.+
T Consensus 104 ~~~~~~~aitly~~~~~~d~~~~~q~vkr~~~~~~~~le~Alk~L 148 (250)
T COG5401 104 NDAQPGKAITLYFLAVDPDGYFVRQVVKRANYYPKNILEEALKEL 148 (250)
T ss_pred CccCCCccEEEEEEecCCCcceeecccccccCCcccHHHHHHHHH
Confidence 689999999999998888889999999888888877777766654
No 9
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=21.73 E-value=1.1e+02 Score=31.39 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=19.9
Q ss_pred eeEEEEeeecCCC-c---ceeeEeeeeccCCCCC
Q 020017 266 TRAYMVPLEGADG-T---KAKAAAVCHTDTSAWN 295 (332)
Q Consensus 266 T~vY~V~L~g~dG-~---~~~AvAVCH~DTS~Wn 295 (332)
-.+-+|.|.+..- + |++|-+|||+|-+.-+
T Consensus 15 l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~ 48 (366)
T COG1062 15 LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLS 48 (366)
T ss_pred eEEEEEecCCCCCCeEEEEEEEeeccccchhhhc
Confidence 3455666666542 2 5799999999974433
No 10
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=17.00 E-value=91 Score=24.21 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhc
Q 020017 6 LPILAFLSLALVAS 19 (332)
Q Consensus 6 ~~i~~~l~l~~~~s 19 (332)
|.+++|||++|++.
T Consensus 5 l~vialLC~aLva~ 18 (65)
T PF10731_consen 5 LIVIALLCVALVAI 18 (65)
T ss_pred hhHHHHHHHHHHHH
Confidence 45677889988873
Done!