Query 020017
Match_columns 332
No_of_seqs 175 out of 256
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j4t_A Angiogenin-4; angiogene 21.6 21 0.00071 30.1 0.2 29 2-30 2-30 (144)
2 1edn_A Endothelin-1; signal po 13.3 27 0.00092 21.7 -0.8 6 257-262 12-17 (26)
3 1obb_A Maltase, alpha-glucosid 12.6 60 0.0021 32.4 1.0 42 280-326 167-208 (480)
4 1ng7_A Poliovirus 3A-N, genome 12.1 38 0.0013 25.0 -0.5 14 35-48 15-28 (60)
5 2vqc_A Hypothetical 13.2 kDa p 10.9 1.1E+02 0.0036 24.7 1.7 34 157-192 31-65 (118)
6 1srb_A Sarafotoxins precursor; 10.7 30 0.001 21.5 -1.2 6 257-262 12-17 (26)
7 2lde_A Sarafotoxin-I3; endothe 9.7 35 0.0012 21.2 -1.2 6 257-262 12-17 (26)
8 2zxx_A Geminin; coiled-coil, c 9.1 74 0.0025 24.6 0.1 11 22-32 11-21 (79)
9 2ot3_A RAB5 GDP/GTP exchange f 7.3 96 0.0033 28.4 0.1 23 189-211 225-247 (274)
10 3zqu_A Probable aromatic acid 7.1 2.1E+02 0.0073 25.3 2.3 24 187-211 163-186 (209)
No 1
>2j4t_A Angiogenin-4; angiogenesis, endonuclease, differentiation, cancer, nuclease, hydrolase, ribonuclease, developmental protein; 2.02A {Mus musculus}
Probab=21.61 E-value=21 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=2.6
Q ss_pred CcchHHHHHHHHHHHhhccCCCChhhhhh
Q 020017 2 EFHLLPILAFLSLALVASHADISPELYWK 30 (332)
Q Consensus 2 e~~~~~i~~~l~l~~~~s~a~~p~e~YW~ 30 (332)
.+.+++++++|+|.|...+.++..+..|+
T Consensus 2 ~~~~~~llll~ll~l~~~~~s~~~~~~~~ 30 (144)
T 2j4t_A 2 TMSPCPLLLVFVLGLVVIPPTLAQNERYE 30 (144)
T ss_dssp ------------------------CHHHH
T ss_pred chHHHHHHHHHHHHHhccccccccchHHH
Confidence 34555666666666666777665554454
No 2
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=13.31 E-value=27 Score=21.69 Aligned_cols=6 Identities=50% Similarity=1.658 Sum_probs=4.1
Q ss_pred eeeccc
Q 020017 257 VFYCHA 262 (332)
Q Consensus 257 VfyCH~ 262 (332)
|||||-
T Consensus 12 ~YfChl 17 (26)
T 1edn_A 12 VYFCHL 17 (26)
T ss_dssp TTTSTT
T ss_pred EEEEec
Confidence 677774
No 3
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=12.60 E-value=60 Score=32.44 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=33.4
Q ss_pred ceeeEeeeeccCCCCCCCchhhhhhccCCCCcceeeeecCCcEEEee
Q 020017 280 KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 326 (332)
Q Consensus 280 ~~~AvAVCH~DTS~Wnp~H~aF~~L~vkPG~~pVCHfl~~~~ivWvp 326 (332)
+.+.+++||.+-+ -.+.. +.||+.|-.+ -.-.++-||+.|+.
T Consensus 167 ~~rviG~c~~~~~---~~~~l-~~lgv~~~~v-~~~v~GlNH~~w~~ 208 (480)
T 1obb_A 167 PIKAVGFCHGHYG---VMEIV-EKLGLEEEKV-DWQVAGVNHGIWLN 208 (480)
T ss_dssp CSEEEEECSGGGH---HHHHH-HHTTCCGGGE-EEEEEEETTEEEEE
T ss_pred CCcEEecCCCHHH---HHHHH-HHhCCCHHHc-eEEEEeecchhhhh
Confidence 4588999999986 35777 9999998765 34668889999984
No 4
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=12.07 E-value=38 Score=25.01 Aligned_cols=14 Identities=50% Similarity=0.876 Sum_probs=12.7
Q ss_pred CCCccHHHHhhcCC
Q 020017 35 NSPMPKAVKDLLQP 48 (332)
Q Consensus 35 ~TPmPkai~~Ll~p 48 (332)
+||-|.||.|||+.
T Consensus 15 e~ppP~aI~DLLks 28 (60)
T 1ng7_A 15 TSPPPECINDLLQA 28 (60)
T ss_dssp CCCSSTTTHHHHHH
T ss_pred CCCCCHHHHHHHHc
Confidence 79999999999964
No 5
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=10.90 E-value=1.1e+02 Score=24.68 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=25.8
Q ss_pred ChhHHhhhcCCCCCCHHHHHHHHHHH-HccCCCCCCc
Q 020017 157 KLPEIFNQFSVKPGSVEAEIMQNTIK-ECEDPGIKGE 192 (332)
Q Consensus 157 kl~~iL~~Fsi~~~S~~A~~m~~Tl~-~Ce~p~~~GE 192 (332)
.|.+||+.|.|+. +.|..+..||+ .||.-|.+-|
T Consensus 31 sledilaqfeis~--~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 31 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 5789999999863 56889999995 5987665433
No 6
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=10.75 E-value=30 Score=21.49 Aligned_cols=6 Identities=33% Similarity=1.624 Sum_probs=3.6
Q ss_pred eeeccc
Q 020017 257 VFYCHA 262 (332)
Q Consensus 257 VfyCH~ 262 (332)
|||||.
T Consensus 12 ~YfChl 17 (26)
T 1srb_A 12 LYFCHQ 17 (26)
T ss_dssp HHHHSC
T ss_pred EEEEec
Confidence 566664
No 7
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=9.65 E-value=35 Score=21.22 Aligned_cols=6 Identities=33% Similarity=1.149 Sum_probs=3.6
Q ss_pred eeeccc
Q 020017 257 VFYCHA 262 (332)
Q Consensus 257 VfyCH~ 262 (332)
|||||.
T Consensus 12 ~yfChl 17 (26)
T 2lde_A 12 MNFCHK 17 (26)
T ss_dssp HHHHST
T ss_pred heeecc
Confidence 566664
No 8
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=9.08 E-value=74 Score=24.64 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=8.1
Q ss_pred CCChhhhhhhc
Q 020017 22 DISPELYWKTV 32 (332)
Q Consensus 22 ~~p~e~YW~s~ 32 (332)
.-|++.||+-+
T Consensus 11 e~Pse~YWk~l 21 (79)
T 2zxx_A 11 ENPSSQYWKEV 21 (79)
T ss_dssp CCTTCTHHHHH
T ss_pred CCCcHHHHHHH
Confidence 34889999854
No 9
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=7.29 E-value=96 Score=28.41 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred CCCcccccccchhHHHHHhhhhc
Q 020017 189 IKGEQKYCATSLESMIDFSTSKL 211 (332)
Q Consensus 189 ~~GE~K~CaTSLESMvdFa~S~L 211 (332)
..||..||.|++|+-++|..+.=
T Consensus 225 ~~GE~gY~lttl~aAv~fI~~l~ 247 (274)
T 2ot3_A 225 MTGEDGYYFTNLCCAVAFIEKLD 247 (274)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987643
No 10
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=7.15 E-value=2.1e+02 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=0.0
Q ss_pred CCCCCcccccccchhHHHHHhhhhc
Q 020017 187 PGIKGEQKYCATSLESMIDFSTSKL 211 (332)
Q Consensus 187 p~~~GE~K~CaTSLESMvdFa~S~L 211 (332)
||..|. -.+..|+|+|+||++.+.
T Consensus 163 pp~~g~-ya~p~~iediv~~vv~r~ 186 (209)
T 3zqu_A 163 PAAPGF-YHQPQSVEDLVDFVVARI 186 (209)
T ss_dssp CSCCCC-TTCCCSHHHHHHHHHHHH
T ss_pred CCCccc-ccCCCCHHHHHHHHHHHH
Done!