BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020018
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
IT +TL P W++ II + MK EK ++P +++ +++L
Sbjct: 34 EITVRDFKTLAPRRWLNDTIIEFF-----MKYIEK--STPNTVAFNSFF-------YTNL 79
Query: 172 NFAQAAGFRDRYMSR----LDTCEKIYVPIN-SDGHWYMLVVDISHATATIWDSLESPSR 226
+ G R R+M R +D +KI+ PIN + HW + ++D+ T DSL +
Sbjct: 80 SERGYQGVR-RWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN 138
Query: 227 REKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYV 283
S AIL L + +E++ F ++ C PQQPNG+DCG YV
Sbjct: 139 AM-----SFAILTDLQKYVMEESKHTIGEDFDLIHLD-C-----PQQPNGYDCGIYV 184
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 31/177 (17%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
IT +TL P W++ II + MK EK ++P +++ +++L
Sbjct: 34 EITVRDFKTLAPRRWLNDTIIEFF-----MKYIEK--STPNTVAFNSFF-------YTNL 79
Query: 172 NFAQAAGFRDRYMSR----LDTCEKIYVPIN-SDGHWYMLVVDISHATATIWDSLESPSR 226
+ G R R+M R +D +KI+ PIN + HW + ++D+ T DSL +
Sbjct: 80 SERGYQGVR-RWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN 138
Query: 227 REKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFDCGYYV 283
S AIL L + +E++ F ++ C PQQPNG+D G YV
Sbjct: 139 AM-----SFAILTDLQKYVMEESKHTIGEDFDLIHLD-C-----PQQPNGYDXGIYV 184
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
+ITR ++TL W++ +II Y + + EK + S F ++++ A + ++
Sbjct: 33 TITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHA-FNTFFFTKLKTAGYQAV 91
Query: 172 NFAQAAGFRDRYMSRLD--TCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREK 229
R+ ++D + + + VPI+ HW + VVD T +DS+ +
Sbjct: 92 K---------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGIN---- 138
Query: 230 MINESLAILASLDFVLRQEARALFCNQFTFLNFQI-CRQAGLPQQPNGFDCGYYVMKYMD 288
NE+ IL L+QE+ +F +Q+ +++ +PQQ NG DCG + KY D
Sbjct: 139 --NEACRILLQY---LKQESIDKKRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFACKYAD 193
Query: 289 SPCIV 293
CI
Sbjct: 194 --CIT 196
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
+ITR ++TL W++ +II Y + + EK + S F ++++ A + ++
Sbjct: 33 TITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHA-FNTFFFTKLKTAGYQAV 91
Query: 172 NFAQAAGFRDRYMSRLD--TCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREK 229
R+ ++D + + + VPI+ HW + VVD T +DS+ +
Sbjct: 92 K---------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGIN---- 138
Query: 230 MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAG--LPQQPNGFDCGYYVMKYM 287
NE+ IL L+QE+ +F +Q+ + +PQQ NG DCG + KY
Sbjct: 139 --NEACRILLQY---LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYA 193
Query: 288 DSPCIV 293
D CI
Sbjct: 194 D--CIT 197
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
+ITR ++TL W++ +II Y + + EK + S F ++++ A + ++
Sbjct: 37 TITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHA-FNTFFFTKLKTAGYQAV 95
Query: 172 NFAQAAGFRDRYMSRLD--TCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREK 229
R+ ++D + + + VPI+ HW + VVD T +DS+ +
Sbjct: 96 K---------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGIN---- 142
Query: 230 MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAG--LPQQPNGFDCGYYVMKYM 287
NE+ IL L+QE+ +F +Q+ + +PQQ NG DCG + KY
Sbjct: 143 --NEACRILLQY---LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYA 197
Query: 288 DSPCIV 293
D CI
Sbjct: 198 D--CIT 201
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
+ITR ++TL W++ +II Y + + EK + S F ++++ A + ++
Sbjct: 45 TITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHA-FNTFFFTKLKTAGYQAV 103
Query: 172 NFAQAAGFRDRYMSRLD--TCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREK 229
R+ ++D + + + VPI+ HW + VVD T +DS+ +
Sbjct: 104 K---------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGIN---- 150
Query: 230 MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAG--LPQQPNGFDCGYYVMKYM 287
NE+ IL L+QE+ +F +Q+ + +PQQ NG DCG + KY
Sbjct: 151 --NEACRILLQY---LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYA 205
Query: 288 DSPCIV 293
D CI
Sbjct: 206 D--CIT 209
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
+ITR ++TL W++ +II Y + + EK + S F ++++ A + ++
Sbjct: 33 TITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHA-FNTFFFTKLKTAGYQAV 91
Query: 172 NFAQAAGFRDRYMSRLD--TCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREK 229
R+ ++D + + + VPI+ HW + VVD T +DS+ +
Sbjct: 92 K---------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGIN---- 138
Query: 230 MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAG--LPQQPNGFDCGYYVMKYM 287
NE+ IL L+QE+ +F +Q+ + +PQQ NG D G + KY
Sbjct: 139 --NEACRILLQY---LKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYA 193
Query: 288 DSPCIV 293
D CI
Sbjct: 194 D--CIT 197
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 112 SITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSL 171
+ITR ++TL W++ +II Y + + EK + S F ++++ A + ++
Sbjct: 12 TITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHA-FNTFFFTKLKTAGYQAV 70
Query: 172 NFAQAAGFRDRYMSRLD--TCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREK 229
R+ ++D + + + VPI+ HW + VVD T +DS+ +
Sbjct: 71 K---------RWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGIN---- 117
Query: 230 MINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAG--LPQQPNGFDCGYYVMKYM 287
NE+ IL L+QE+ +F +Q+ + +PQQ NG D G + KY
Sbjct: 118 --NEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDSGMFACKYA 172
Query: 288 DSPCIV 293
D CI
Sbjct: 173 D--CIT 176
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 32/199 (16%)
Query: 99 HGKR-EIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADY---KNMKEAEKDVTSPRCW 154
HG + EI+ ITR ++TL W++ ++I Y + +N K+ + +
Sbjct: 19 HGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTF 78
Query: 155 FLPTYYSQA--ALADWS-SLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDIS 211
F P S A+ W+ +N + E I VPI+ HW ++V+D+
Sbjct: 79 FYPKLKSGGYQAVKRWTKGVNLFEQ--------------EIILVPIHRKVHWSLVVIDLR 124
Query: 212 HATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNF--QICRQAG 269
DS+ R I L L+ E++ + L + +
Sbjct: 125 KKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHE 175
Query: 270 LPQQPNGFDCGYYVMKYMD 288
+PQQ NG DCG + KY D
Sbjct: 176 IPQQLNGSDCGMFTCKYAD 194
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 32/199 (16%)
Query: 99 HGKR-EIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADY---KNMKEAEKDVTSPRCW 154
HG + EI+ ITR ++TL W++ ++I Y + +N K+ + +
Sbjct: 25 HGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTF 84
Query: 155 FLPTYYSQA--ALADWS-SLNFAQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDIS 211
F P S A+ W+ +N + E I VPI+ HW ++V+D+
Sbjct: 85 FYPKLKSGGYQAVKRWTKGVNLFEQ--------------EIILVPIHRKVHWSLVVIDLR 130
Query: 212 HATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNF--QICRQAG 269
DS+ R I L L+ E++ + L + +
Sbjct: 131 KKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHE 181
Query: 270 LPQQPNGFDCGYYVMKYMD 288
+PQQ NG D G + KY D
Sbjct: 182 IPQQLNGSDSGMFTCKYAD 200
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 109 GDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYY------SQ 162
G +T + L GE+++ II Y Y +++A ++ F +Y
Sbjct: 31 GGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKEN 90
Query: 163 AALADWSSLNFAQAAGFRDRYMSR---LDTCEKIYVPINSDGHWYMLVV 208
D +L+ AQ R R +R + + I+VP+N HWY+ V+
Sbjct: 91 NLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVI 139
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 270 LPQQPNGFDCGYYVMKYMDS 289
+P+Q N DCG Y+++Y++S
Sbjct: 256 VPKQDNSSDCGVYLLQYVES 275
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 19 HSRDKNVISKSCRLRFSVGPFTIPSP----ISEDAKQLILYLF 57
+S IS + R +G + P+P +SEDAKQLI L
Sbjct: 230 YSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLL 272
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 19 HSRDKNVISKSCRLRFSVGPFTIPSP----ISEDAKQLILYLF 57
+S IS + R +G + P+P +SEDAKQLI L
Sbjct: 211 YSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLL 253
>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|C Chain C, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|D Chain D, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|E Chain E, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|F Chain F, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|G Chain G, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|H Chain H, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|I Chain I, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|J Chain J, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|K Chain K, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|L Chain L, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|M Chain M, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXW|A Chain A, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|C Chain C, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|D Chain D, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|E Chain E, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|F Chain F, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|G Chain G, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|H Chain H, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|I Chain I, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|J Chain J, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|K Chain K, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|L Chain L, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|M Chain M, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
Length = 626
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 90 LFVEITPFFH----GKREIVVDIGDNSITRSSMRT---LLPGEWIDGD 130
LF+E+ FF+ GK IV + D+S+T S +RT L GE + D
Sbjct: 479 LFIELDKFFYTLTPGKNTIVRNHQDSSVTISKVRTFDQLGAGEGVSED 526
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,616,844
Number of Sequences: 62578
Number of extensions: 378217
Number of successful extensions: 1009
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 17
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)