Query 020018
Match_columns 332
No_of_seqs 188 out of 1204
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:32:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 1.3E-43 4.3E-48 321.1 22.1 202 99-317 20-224 (226)
2 2xph_A Sentrin-specific protea 100.0 6.5E-43 2.2E-47 318.8 20.3 201 100-317 33-236 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 2E-40 7E-45 299.1 18.9 196 100-317 22-219 (221)
4 3eay_A Sentrin-specific protea 100.0 4.5E-40 1.5E-44 309.3 15.9 208 107-332 29-313 (323)
5 2bkr_A Sentrin-specific protea 100.0 2.1E-39 7.3E-44 290.6 16.6 198 102-332 2-209 (212)
6 2oix_A Xanthomonas outer prote 100.0 1.4E-31 4.7E-36 235.2 12.4 174 123-332 1-181 (186)
7 4ekf_A Adenain; alpha and beta 97.1 0.0036 1.2E-07 53.4 10.6 123 199-330 51-194 (204)
8 1rxq_A YFIT; nickel-binding, h 39.9 15 0.0005 29.7 2.4 29 31-59 5-33 (178)
9 1kdl_A YOPD protein; yersinia, 19.0 47 0.0016 18.6 1.2 20 3-22 5-24 (26)
10 3v4k_A DNA DC->DU-editing enzy 13.1 40 0.0014 28.9 -0.1 37 70-114 102-138 (203)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.3e-43 Score=321.11 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=177.4
Q ss_pred cCCcceEEeeCCeeeehhhhhccCCCCCcCHHHHHHHHhhhhHHhhhhcCCCCcEEEECchhHHHhhhccccchhHhhhh
Q 020018 99 HGKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAG 178 (332)
Q Consensus 99 ~~~~~vlv~~~~~~L~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~~~~~~~~~~~~~~~s~f~~~l~~~~~~~~~~~v~r 178 (332)
+++++++++++++.|+.+|+.+|.+++||||+|||||+++ |.++..+...+++++|+|+|++++.. .+|.++++
T Consensus 20 ~~~~~~~~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~--L~~~~~~~~~~~~~~f~s~f~~~l~~----~~~~~v~~ 93 (226)
T 1th0_A 20 GPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNL--LVERNKKQGYPALHVFSTFFYPKLKS----GGYQAVKR 93 (226)
T ss_dssp SCTTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHH--HHHHHHHHTCCCEEECCTTHHHHHHH----HTGGGTGG
T ss_pred CCccceeeccCCeEEEHHHHhhcCCCCccChHHHHHHHHH--HHHhhhhccCCcEEEEeHHHHHHhhh----cccHHHHH
Confidence 4688999999999999999999999999999999999999 76654433468999999999999887 46889999
Q ss_pred hhhhccCCcCCCCeeEEeEcCCCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 020018 179 FRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFT 258 (332)
Q Consensus 179 w~~~~~~~l~~~~~I~iPIn~~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~ 258 (332)
|++ +.+++++++||||||.++||+|+|||+++++|++||||++.+... .+.|..|+..+...+.+..++
T Consensus 94 w~~--~~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~---------~~~l~~~l~~e~~~k~~~~~~ 162 (226)
T 1th0_A 94 WTK--GVNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRI---------CEILLQYLQDESKTKRNSDLN 162 (226)
T ss_dssp GGT--TCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHH---------HHHHHHHHHHHHHHHTSCCCC
T ss_pred Hhh--cCCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHH---------HHHHHHHHHHHHHHhcCCCCC
Confidence 998 899999999999999999999999999999999999999987543 566888898888777777788
Q ss_pred cccceee--cCCCCCCCCCCCChHHHHHHHhHhhccccCCCCC-CCChHHHHHHHHHHhhch
Q 020018 259 FLNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQ-HDSDHARLLLALYLVQSP 317 (332)
Q Consensus 259 ~~~w~~~--~~~~vPqQ~Ng~DCGvfvl~~~e~l~~~~~~~~~-~d~~~~R~~la~~L~~~~ 317 (332)
.+.|++. ...++|||.||+|||||||+||++++.+.+..|+ .|++.+|++|+.+|+.+.
T Consensus 163 ~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~ 224 (226)
T 1th0_A 163 LLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQ 224 (226)
T ss_dssp GGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred cccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCC
Confidence 8899874 3578999999999999999999999988777775 668999999999998764
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=6.5e-43 Score=318.79 Aligned_cols=201 Identities=21% Similarity=0.345 Sum_probs=176.0
Q ss_pred CCcceEEeeCCeeeehhhhhccCCCCCcCHHHHHHHHhhhhHHhhhhcCCCCcEEEECchhHHHhhhccccchhHhhhhh
Q 020018 100 GKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGF 179 (332)
Q Consensus 100 ~~~~vlv~~~~~~L~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~~~~~~~~~~~~~~~s~f~~~l~~~~~~~~~~~v~rw 179 (332)
+++++++..+++.|+.+|+.+|.+++||||+|||||+++ |.++......+++++++|+|++++.. .+|..+++|
T Consensus 33 ~~~~vl~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~--L~~~~~~~~~~~~~~f~sff~~~l~~----~~~~~v~~w 106 (238)
T 2xph_A 33 NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNM--LMERSKEKGLPSVHAFNTFFFTKLKT----AGYQAVKRW 106 (238)
T ss_dssp CTTCCCEEETTEEECHHHHHTTSTTCCCCHHHHHHHHHH--HHHHTTSTTSCCEEECCTTTTHHHHT----TCHHHHTTT
T ss_pred ChhheeecCCCcEEeHHHHhhcCCCCccCHHHHHHHHHH--HHHhhhhcCCCceeeeecHHHHHhhh----cccHHHHHH
Confidence 456788888999999999999999999999999999999 86654444467899999999999876 468899999
Q ss_pred hhhccCCcCCCCeeEEeEcCCCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCcccc
Q 020018 180 RDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTF 259 (332)
Q Consensus 180 ~~~~~~~l~~~~~I~iPIn~~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~~ 259 (332)
++ +.+++++++||||||.++||+|+|||+++++|++||||++.+... .+.+..++..++..+.+..++.
T Consensus 107 ~~--~~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~---------~~~l~~~L~~e~~~k~~~~~~~ 175 (238)
T 2xph_A 107 TK--KVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA---------CRILLQYLKQESIDKKRKEFDT 175 (238)
T ss_dssp TT--TCCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHH---------HHHHHHHHHHHHHHHHCSCCCC
T ss_pred hc--cCCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHH---------HHHHHHHHHHHHHHhcCCCcCc
Confidence 98 889999999999999999999999999999999999999987654 4567788888877777778888
Q ss_pred ccceee--cCCCCCCCCCCCChHHHHHHHhHhhccccCCCCC-CCChHHHHHHHHHHhhch
Q 020018 260 LNFQIC--RQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQ-HDSDHARLLLALYLVQSP 317 (332)
Q Consensus 260 ~~w~~~--~~~~vPqQ~Ng~DCGvfvl~~~e~l~~~~~~~~~-~d~~~~R~~la~~L~~~~ 317 (332)
+.|++. ...++|||.||+|||+|||+||++++.+.+..|+ .|++.+|++|+.+|+.+.
T Consensus 176 ~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ 236 (238)
T 2xph_A 176 NGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 236 (238)
T ss_dssp TTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred ccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCC
Confidence 899874 3678999999999999999999999988777775 568999999999998764
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=2e-40 Score=299.08 Aligned_cols=196 Identities=23% Similarity=0.450 Sum_probs=161.0
Q ss_pred CCcceEEeeCCeeeehhhhhccCCCCCcCHHHHHHHHhhhhHHhhhhcCCCCcEEEECchhHHHhhhccccchhHhhhhh
Q 020018 100 GKREIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLPTYYSQAALADWSSLNFAQAAGF 179 (332)
Q Consensus 100 ~~~~vlv~~~~~~L~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~~~~~~~~~~~~~~~s~f~~~l~~~~~~~~~~~v~rw 179 (332)
++++++++.+++.|+.+|+.+|.+++||||+|||||+++ |.+. .+++++|+|+|+.++.. .+|..+++|
T Consensus 22 ~~~~~l~~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~--l~~~-----~~~~~~f~s~f~~~l~~----~~~~~v~rw 90 (221)
T 1euv_A 22 RENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKY--IEKS-----TPNTVAFNSFFYTNLSE----RGYQGVRRW 90 (221)
T ss_dssp SSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHH--HHHH-----STTEEECCTHHHHHHHH----HTGGGTTTT
T ss_pred CCCeeeecCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHH--HHhc-----CCCeEEEEcHHHHHhhh----hccHHHHHH
Confidence 357788899999999999999999999999999999999 7654 36899999999999887 468899999
Q ss_pred hhhccCCcCCCCeeEEeEcC-CCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 020018 180 RDRYMSRLDTCEKIYVPINS-DGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFT 258 (332)
Q Consensus 180 ~~~~~~~l~~~~~I~iPIn~-~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~ 258 (332)
+++.+.+++++++||||||. ++||+|+|||+++++|++||||++..... ..++++.++.|+..+..++.+.
T Consensus 91 ~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~i~~~l~~~l~~e~~~~~~~--- 162 (221)
T 1euv_A 91 MKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAM-----SFAILTDLQKYVMEESKHTIGE--- 162 (221)
T ss_dssp TGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHH-----HHHHHHHHHHHHHHHTTSSSCT---
T ss_pred HHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcch-----HHHHHHHHHHHHHHHHHHhcCC---
Confidence 98657899999999999995 69999999999999999999998653322 1124677888988775544332
Q ss_pred cccceeecCCCCCCCCCCCChHHHHHHHhHhhccccCCCCC-CCChHHHHHHHHHHhhch
Q 020018 259 FLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQ-HDSDHARLLLALYLVQSP 317 (332)
Q Consensus 259 ~~~w~~~~~~~vPqQ~Ng~DCGvfvl~~~e~l~~~~~~~~~-~d~~~~R~~la~~L~~~~ 317 (332)
.|++ ...++|||.||+|||+|||+||++++.+.+..|+ .|++.+|.+|+..|+.+.
T Consensus 163 --~~~~-~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~ 219 (221)
T 1euv_A 163 --DFDL-IHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDA 219 (221)
T ss_dssp --TCEE-EEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred --CceE-eecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhcc
Confidence 3554 3578999999999999999999999987776665 456777777777776554
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=309.30 Aligned_cols=208 Identities=21% Similarity=0.325 Sum_probs=168.2
Q ss_pred eeCCeeeehhhhhccCCCCCcCHHHHHHHHhhhhHHh-hhhcCCCCcEEEECchhHHHhhhccc------------cchh
Q 020018 107 DIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKE-AEKDVTSPRCWFLPTYYSQAALADWS------------SLNF 173 (332)
Q Consensus 107 ~~~~~~L~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~-~~~~~~~~~~~~~~s~f~~~l~~~~~------------~~~~ 173 (332)
..+++.|+.+|+.+|.+++||||+|||||+++ |.. ...+...+++++||||||++|..... ..+|
T Consensus 29 ~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~--L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y 106 (323)
T 3eay_A 29 TKGGLGVTNEDLECLEEGEFLNDVIIDFYLKY--LILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRH 106 (323)
T ss_dssp SSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHH--HHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHHH
T ss_pred CCCceEEEHHHHHhhCCCCCcCHHHHHHHHHH--HHhhhccccccCcEEEEchHHHHHHHhcccccccccccchhHHHHH
Confidence 46889999999999999999999999999999 642 22111236899999999999986431 1368
Q ss_pred HhhhhhhhhccCCcCCCCeeEEeEcCCCceeEEEEEecCc----------------------------------------
Q 020018 174 AQAAGFRDRYMSRLDTCEKIYVPINSDGHWYMLVVDISHA---------------------------------------- 213 (332)
Q Consensus 174 ~~v~rw~~~~~~~l~~~~~I~iPIn~~~HW~L~vVd~~~~---------------------------------------- 213 (332)
.+|++|++ +++++++++||||||.+.||+|+||+++..
T Consensus 107 ~~VrrWtr--kvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 184 (323)
T 3eay_A 107 KRVRTWTR--HINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSL 184 (323)
T ss_dssp TTSGGGGT--TCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC----------------------------------
T ss_pred HHHHHHHh--hcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999 899999999999999999999999998742
Q ss_pred ----------------------ceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhc--CccccccceeecCCC
Q 020018 214 ----------------------TATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFC--NQFTFLNFQICRQAG 269 (332)
Q Consensus 214 ----------------------~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~--~~~~~~~w~~~~~~~ 269 (332)
+|.+||||++..... ++..|+.||..|+..+.+ .+++...|... .+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~--------~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~-~~~ 255 (323)
T 3eay_A 185 SAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQN--------TVQNLREYLEVEWEVKLKTHRQFSKTNMVDL-CPK 255 (323)
T ss_dssp ---------------CCCCBCSEEEEECSSCCSSHHH--------HHHHHHHHHHHHHHHHHSSCCCCCTTTSCEE-CCB
T ss_pred ccccccccccccccccccCCCCeEEEEECCCCCCcch--------HHHHHHHHHHHHHHhhcCCCcCCCHhHceec-cCC
Confidence 589999999975433 367899999999887753 45666677653 567
Q ss_pred CCCCCCCCChHHHHHHHhHhhccccCCCCCCCChHHHHHHHHHHhhchhHHHHHHHHHHHHhC
Q 020018 270 LPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL 332 (332)
Q Consensus 270 vPqQ~Ng~DCGvfvl~~~e~l~~~~~~~~~~d~~~~R~~la~~L~~~~~n~~R~~ll~~i~~l 332 (332)
+|+|.||+|||+|||+||++++.+....|...+. +...+....+.++|.+|+++|.+|
T Consensus 256 ~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~-----~~~wf~~~~i~~kR~ei~~LI~~L 313 (323)
T 3eay_A 256 VPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIH-----LEKWFPRHVIKTKREDIRELILKL 313 (323)
T ss_dssp CCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCB-----CTTSSCHHHHHTHHHHHHHHHHHH
T ss_pred CCCcCCCCcHHHHHHHHHHHHHhCCccccccccc-----cccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877666653221 223445789999999999999886
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=2.1e-39 Score=290.56 Aligned_cols=198 Identities=21% Similarity=0.325 Sum_probs=157.0
Q ss_pred cceEEeeCCeeeehhhhhccCCCCCcCHHHHHHHHhhhhHHhhhhcCCCCcEEEEC---chhHHHhhhccccchhHhhhh
Q 020018 102 REIVVDIGDNSITRSSMRTLLPGEWIDGDIITMYADYKNMKEAEKDVTSPRCWFLP---TYYSQAALADWSSLNFAQAAG 178 (332)
Q Consensus 102 ~~vlv~~~~~~L~~~Dl~~L~~~~WLND~IIn~y~~~lnl~~~~~~~~~~~~~~~~---s~f~~~l~~~~~~~~~~~v~r 178 (332)
++++++++++.|+.+|+++|.+++||||+|||||+++ |.++..+...+++++|+ ++|+..+ .+++++++
T Consensus 2 d~~~l~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~--L~~~~~~~~~~~~~~~~p~~s~f~~~~------~~~~~v~~ 73 (212)
T 2bkr_A 2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEY--FANSQFHDSSDHVSFISPEVTQFIKCT------SNPAEIAM 73 (212)
T ss_dssp CCEEEEETTEEEEHHHHHTTSTTSCCBHHHHHHHHHH--HHHTTTGGGTTTEEEECHHHHHHHHHC------CCHHHHHH
T ss_pred CCEEEEECCEEEeHHHHhhcCCCCCcCHHHHHHHHHH--HHHhhccCCCCcEEEEChHHHHHHHhC------CCHHHHHH
Confidence 4688999999999999999999999999999999999 87765433457899999 5666333 23678999
Q ss_pred hhhhccCCcCCCCeeEEeEc-------CCCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHh
Q 020018 179 FRDRYMSRLDTCEKIYVPIN-------SDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARA 251 (332)
Q Consensus 179 w~~~~~~~l~~~~~I~iPIn-------~~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~ 251 (332)
|++ +.+++++++|||||| +++||+|+||+++++++++||||++.+... +..+.+.|+.++..+
T Consensus 74 ~~~--~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~-----~~~l~~~l~~~l~~~--- 143 (212)
T 2bkr_A 74 FLE--PLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH-----AKQVAEKLEAFLGRK--- 143 (212)
T ss_dssp HHG--GGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH-----HHHHHHHHHHHHSCT---
T ss_pred Hhc--ccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHH-----HHHHHHHHHHHhCCc---
Confidence 999 789999999999999 489999999999999999999999887654 334455566655322
Q ss_pred hhcCccccccceeecCCCCCCCCCCCChHHHHHHHhHhhccccCCCCCCCChHHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 020018 252 LFCNQFTFLNFQICRQAGLPQQPNGFDCGYYVMKYMDSPCIVVHDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARK 331 (332)
Q Consensus 252 ~~~~~~~~~~w~~~~~~~vPqQ~Ng~DCGvfvl~~~e~l~~~~~~~~~~d~~~~R~~la~~L~~~~~n~~R~~ll~~i~~ 331 (332)
.. .|.+ ...++|||.||+|||||||+||++++.+.......+ ....+.+++++++|++|+++|.+
T Consensus 144 -----~~--~~~~-~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~-------~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 144 -----GD--KLAF-VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTES-------LLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp -----TC--CCCE-EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCC-------HHHHCCHHHHHHHHHHHHHHHHH
T ss_pred -----cc--cceE-eECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCccc-------ccccCCHHHHHHHHHHHHHHHHH
Confidence 11 2434 357899999999999999999999987652211111 22344578999999999999987
Q ss_pred C
Q 020018 332 L 332 (332)
Q Consensus 332 l 332 (332)
|
T Consensus 209 L 209 (212)
T 2bkr_A 209 L 209 (212)
T ss_dssp H
T ss_pred H
Confidence 6
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.97 E-value=1.4e-31 Score=235.17 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=119.9
Q ss_pred CCCCcCHHHHHHHHhhhhHHhhhhcCCC-CcEEEECchhHHHhhhccccchhHhhhhhhhhccCCcCCCCeeEEeEcC-C
Q 020018 123 PGEWIDGDIITMYADYKNMKEAEKDVTS-PRCWFLPTYYSQAALADWSSLNFAQAAGFRDRYMSRLDTCEKIYVPINS-D 200 (332)
Q Consensus 123 ~~~WLND~IIn~y~~~lnl~~~~~~~~~-~~~~~~~s~f~~~l~~~~~~~~~~~v~rw~~~~~~~l~~~~~I~iPIn~-~ 200 (332)
+++||||+|||||+++ |.++..+... .++++++|++...+..... .+++++.+|++ ..++ +++||||||. +
T Consensus 1 ~~~WLND~iI~fy~~~--L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~-~~~~~~~~~~~--~~~~--~~~i~iPin~~~ 73 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDD--LARRLRGEPNAHLLHFADSQVVTMLSSADP-DQQARAQRLLA--GDDI--PPIVFLPINQPN 73 (186)
T ss_dssp -CCCCCHHHHHHHHHH--HHHHTTTSTTGGGEEECCHHHHHHTTCSSH-HHHHHHHHHHH--STTS--CSEEEEEEEETT
T ss_pred CCCCcChHHHHHHHHH--HHHHhhhccCcceEEEECHHHHHHHHhCCH-HHHHHHHHHcc--cccc--cCEEEEEEeCCC
Confidence 4789999999999999 8776543223 4599999877665543221 34667777776 3333 9999999995 8
Q ss_pred CceeEEEEEecCcce---eeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCccccccceeecCCCCCCCCCCC
Q 020018 201 GHWYMLVVDISHATA---TIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGF 277 (332)
Q Consensus 201 ~HW~L~vVd~~~~~I---~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~~~~w~~~~~~~vPqQ~Ng~ 277 (332)
+||+|+|||.+++++ +|||||++.+... ..+.+.++.++.. +. ..+ ...++|||.||+
T Consensus 74 ~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~~------~~l~~~l~~~l~~--------~~--~~~---~~~~~PqQ~Ng~ 134 (186)
T 2oix_A 74 AHWSLLVVDRRNKDAVAAYHYDSMAQKDPQQ------RYLADMAAYHLGL--------DY--QQT---HEMPIAIQSDGY 134 (186)
T ss_dssp TEEEEEEEECSSTTSCEEEEECCCSSCCHHH------HHHHHHHHHHTTC--------CG--GGC---EEECBCCCC--C
T ss_pred CccEEEEEECCCCeeeeeEEEcCCCCCCHHH------HHHHHHHHHHhCC--------Cc--ccc---ccCCCCCCCCCC
Confidence 999999999999999 9999999965432 2234555555431 11 112 246899999999
Q ss_pred ChHHHHHHHhHhhcccc--CCCCCCCChHHHHHHHHHHhhchhHHHHHHHHHHHHhC
Q 020018 278 DCGYYVMKYMDSPCIVV--HDSYQHDSDHARLLLALYLVQSPLNKIRCRLIQEARKL 332 (332)
Q Consensus 278 DCGvfvl~~~e~l~~~~--~~~~~~d~~~~R~~la~~L~~~~~n~~R~~ll~~i~~l 332 (332)
|||||||.||++++.+. ...... ..+-.+++.++|.+|+++|.++
T Consensus 135 DCGvfv~~~~~~l~~~~~~~~~~~~----------~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 135 SAGDHVLTGIEVLAHRVLDGTFDYA----------GGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTST----------TTTCBTTCCCCHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHhhcCccCC----------CcCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999987542 111110 0122556777888888887764
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=97.13 E-value=0.0036 Score=53.39 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=69.6
Q ss_pred CCCceeEEEEEecCcceeeecCCCCCChhhHhhHHHHHHHHHHHHHHHHHHHhhhcCccccccceeecCCCCCCCCCCCC
Q 020018 199 SDGHWYMLVVDISHATATIWDSLESPSRREKMINESLAILASLDFVLRQEARALFCNQFTFLNFQICRQAGLPQQPNGFD 278 (332)
Q Consensus 199 ~~~HW~L~vVd~~~~~I~~yDSL~~~~~~~~rl~~~~~i~~~L~~~l~~e~~~~~~~~~~~~~w~~~~~~~vPqQ~Ng~D 278 (332)
+|.||..+..|+..++++.||++|=.+.+-.++-.- .-...|+... .....|. =.+.+.....-|=+++--
T Consensus 51 GGvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~qiY~F-----~Y~~llkRSA---L~sspdR-Cv~LvkstqsVQcp~SaA 121 (204)
T 4ekf_A 51 GGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQF-----EYESLLRRSA---IASSPDR-CITLEKSTQSVQGPNSAA 121 (204)
T ss_dssp -CCCEEEEEEETTTTEEEEECTBTTCSHHHHHHHHH-----HHHHHHHHHC---C---------EEEECCSBCSCTTCCC
T ss_pred CceeEEEeEecCCcceEEEeCCCCCCHHHHHHHhhh-----hHHHHHHHHh---hcCCCCc-eeEEEeccccccCcCchh
Confidence 788999999999999999999999887653211110 0111111110 0000000 012223344555667779
Q ss_pred hHHHHHHHhHhhccccCCCCCCC---------------ChH----H--HHHHHHHHhhchhHHHHHHHHHHHH
Q 020018 279 CGYYVMKYMDSPCIVVHDSYQHD---------------SDH----A--RLLLALYLVQSPLNKIRCRLIQEAR 330 (332)
Q Consensus 279 CGvfvl~~~e~l~~~~~~~~~~d---------------~~~----~--R~~la~~L~~~~~n~~R~~ll~~i~ 330 (332)
||+|.+.|+.++..+...++..+ .|. + -+..++..+.....-.|++--++.+
T Consensus 122 CGLFC~lFL~aF~~~p~~pm~~Np~md~~~Gvp~~~l~~P~~~~~lh~NQe~LY~fl~~hS~YFr~h~~~i~~ 194 (204)
T 4ekf_A 122 AGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRS 194 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSCSSSSTTGGGCCCBCGGGTTCGGGHHHHHHHHHHHHHHHHHHCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCccccccCcCcccccCCcchHHHHHhHHHHHHHHHhcCHHHHHhHHHHHH
Confidence 99999999999877766655310 111 2 2335566666666666666555543
No 8
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=39.94 E-value=15 Score=29.69 Aligned_cols=29 Identities=17% Similarity=0.478 Sum_probs=23.2
Q ss_pred hhccccCCccccCCCCHHHHHhhhhhhhc
Q 020018 31 RLRFSVGPFTIPSPISEDAKQLILYLFDD 59 (332)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (332)
-+||-+|+|+.+.|++.+..+.+..-++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 33 (178)
T 1rxq_A 5 NLSYPIGEYKPRESISKEQKDKWIQVLEE 33 (178)
T ss_dssp CCSCTTCCCCCCSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999988766554443
No 9
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=19.00 E-value=47 Score=18.61 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=16.0
Q ss_pred hhhHHHHHHHhhhhhhhhhh
Q 020018 3 KQTTKAMEEYMDGHIQHSRD 22 (332)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (332)
|.+-++|+.|..||-|+-|.
T Consensus 5 kDvlql~qQy~qsh~qa~rA 24 (26)
T 1kdl_A 5 KDVLRLIEQYVSSHTHAMKX 24 (26)
T ss_dssp HHHHHHHHHHTTTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56778999999999988663
No 10
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=13.13 E-value=40 Score=28.93 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=27.5
Q ss_pred ecccccccccccchhhhhhhhhhcccccccCCcceEEeeCCeeee
Q 020018 70 TNCFYDNCICKVCSNIIILLLFVEITPFFHGKREIVVDIGDNSIT 114 (332)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~~~L~ 114 (332)
++|+-|-|+|+.|+. +|..|+..-..|-++++-..|.
T Consensus 102 vTwy~SWSPC~~CA~--------~v~~FL~~~~~v~L~If~aRLY 138 (203)
T 3v4k_A 102 VTCFTSWSPCFSCAQ--------EMAKFISKNKHVSLCIKTARIY 138 (203)
T ss_pred EEEEEeCCChHHHHH--------HHHHHHhhCCCeEEEEEEEeec
Confidence 579999999999999 4566777666666666555555
Done!