Query 020019
Match_columns 332
No_of_seqs 167 out of 1652
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08450 SGL: SMP-30/Gluconola 100.0 3.2E-28 6.8E-33 217.4 26.6 229 46-311 1-244 (246)
2 COG3386 Gluconolactonase [Carb 100.0 2.6E-25 5.7E-30 202.7 30.0 255 37-330 17-294 (307)
3 PLN02919 haloacid dehalogenase 99.8 2.9E-18 6.4E-23 180.0 31.7 254 45-316 568-881 (1057)
4 COG4257 Vgb Streptogramin lyas 99.8 2.8E-17 6.1E-22 142.5 22.7 243 34-314 50-296 (353)
5 PLN02919 haloacid dehalogenase 99.8 5.6E-16 1.2E-20 162.9 28.3 217 46-279 625-890 (1057)
6 PF08450 SGL: SMP-30/Gluconola 99.7 6.4E-16 1.4E-20 138.0 20.3 189 47-268 42-245 (246)
7 KOG1520 Predicted alkaloid syn 99.7 3.8E-15 8.3E-20 135.8 23.1 201 44-267 53-282 (376)
8 PF03022 MRJP: Major royal jel 99.6 1.8E-14 3.9E-19 131.1 19.7 213 98-317 2-260 (287)
9 PF10282 Lactonase: Lactonase, 99.6 1.8E-12 3.9E-17 121.6 30.2 238 43-302 85-345 (345)
10 KOG4499 Ca2+-binding protein R 99.6 3.7E-13 8E-18 114.6 21.5 250 48-329 18-293 (310)
11 COG4257 Vgb Streptogramin lyas 99.6 6.8E-13 1.5E-17 115.5 23.4 231 42-311 101-335 (353)
12 PF10282 Lactonase: Lactonase, 99.6 6.1E-13 1.3E-17 124.7 25.1 251 43-318 35-317 (345)
13 PRK11028 6-phosphogluconolacto 99.6 7.8E-12 1.7E-16 116.4 30.0 247 45-318 35-299 (330)
14 PRK11028 6-phosphogluconolacto 99.5 8.1E-12 1.8E-16 116.2 26.9 231 46-302 81-327 (330)
15 TIGR02604 Piru_Ver_Nterm putat 99.5 2.2E-11 4.7E-16 115.1 28.8 246 46-318 15-345 (367)
16 COG3391 Uncharacterized conser 99.4 6.6E-11 1.4E-15 112.3 25.4 194 45-269 74-273 (381)
17 COG3386 Gluconolactonase [Carb 99.4 4.6E-11 9.9E-16 109.3 22.7 198 40-269 62-276 (307)
18 COG2706 3-carboxymuconate cycl 99.4 2.6E-10 5.6E-15 102.8 26.8 240 44-302 88-344 (346)
19 COG3391 Uncharacterized conser 99.4 3E-10 6.5E-15 107.8 26.7 231 44-317 30-277 (381)
20 TIGR02658 TTQ_MADH_Hv methylam 99.3 2E-09 4.2E-14 100.1 27.7 249 42-318 44-325 (352)
21 TIGR02604 Piru_Ver_Nterm putat 99.3 2.7E-10 5.9E-15 107.7 19.8 162 88-269 7-203 (367)
22 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 3E-08 6.5E-13 89.7 31.9 226 46-314 32-270 (300)
23 COG2706 3-carboxymuconate cycl 99.3 1.5E-08 3.3E-13 91.5 27.6 245 46-316 41-314 (346)
24 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 1.9E-08 4.1E-13 91.0 28.9 218 46-302 74-298 (300)
25 PF07995 GSDH: Glucose / Sorbo 99.2 2.7E-09 5.8E-14 99.4 22.7 165 46-220 3-201 (331)
26 PF05096 Glu_cyclase_2: Glutam 99.2 8.4E-09 1.8E-13 91.2 23.0 192 42-267 42-249 (264)
27 PF06977 SdiA-regulated: SdiA- 99.1 3.7E-08 7.9E-13 87.5 20.7 195 98-311 23-239 (248)
28 PF06977 SdiA-regulated: SdiA- 99.0 1E-07 2.2E-12 84.6 21.6 205 46-273 23-245 (248)
29 PF03022 MRJP: Major royal jel 99.0 2.6E-07 5.6E-12 84.2 23.8 210 47-269 3-255 (287)
30 PF02239 Cytochrom_D1: Cytochr 99.0 4.6E-07 9.9E-12 85.6 25.7 193 56-279 5-204 (369)
31 PF03088 Str_synth: Strictosid 99.0 2.2E-09 4.7E-14 79.5 7.8 69 153-231 1-88 (89)
32 TIGR03606 non_repeat_PQQ dehyd 98.9 2.3E-07 5.1E-12 88.9 21.8 173 38-221 22-250 (454)
33 TIGR02658 TTQ_MADH_Hv methylam 98.9 8.8E-07 1.9E-11 82.5 25.0 209 44-289 104-338 (352)
34 KOG4659 Uncharacterized conser 98.9 8.4E-08 1.8E-12 98.2 19.5 206 46-270 408-682 (1899)
35 KOG4659 Uncharacterized conser 98.9 4.5E-07 9.8E-12 93.1 23.3 239 46-311 366-679 (1899)
36 PF02239 Cytochrom_D1: Cytochr 98.9 3.5E-06 7.7E-11 79.6 27.7 190 47-267 39-236 (369)
37 KOG1214 Nidogen and related ba 98.9 1.1E-07 2.3E-12 93.8 16.3 193 43-273 1023-1220(1289)
38 KOG4499 Ca2+-binding protein R 98.7 6.9E-07 1.5E-11 76.7 15.7 154 97-269 109-275 (310)
39 KOG1214 Nidogen and related ba 98.6 2.2E-06 4.8E-11 84.8 18.1 228 53-318 987-1221(1289)
40 KOG1520 Predicted alkaloid syn 98.6 3.2E-07 6.9E-12 84.4 10.6 146 149-311 114-282 (376)
41 COG3204 Uncharacterized protei 98.6 2E-05 4.4E-10 70.1 20.7 198 98-311 87-301 (316)
42 COG3823 Glutamine cyclotransfe 98.6 3.2E-05 7E-10 65.5 20.2 188 43-268 44-248 (262)
43 cd00200 WD40 WD40 domain, foun 98.5 0.00028 6.1E-09 61.8 27.4 218 48-309 55-277 (289)
44 PF05096 Glu_cyclase_2: Glutam 98.5 5.6E-06 1.2E-10 73.4 15.8 165 45-230 90-261 (264)
45 TIGR03606 non_repeat_PQQ dehyd 98.5 5.9E-06 1.3E-10 79.4 17.2 158 98-269 31-249 (454)
46 cd00200 WD40 WD40 domain, foun 98.5 0.00043 9.3E-09 60.6 28.1 185 46-268 11-197 (289)
47 PRK02888 nitrous-oxide reducta 98.5 1.7E-05 3.8E-10 78.0 20.0 192 55-267 140-392 (635)
48 COG3204 Uncharacterized protei 98.5 0.00011 2.3E-09 65.6 22.1 209 46-278 87-312 (316)
49 COG2133 Glucose/sorbosone dehy 98.4 0.00046 9.9E-09 65.1 27.0 257 43-314 64-387 (399)
50 PF07995 GSDH: Glucose / Sorbo 98.4 5.9E-06 1.3E-10 77.1 13.7 112 151-267 3-131 (331)
51 PRK04792 tolB translocation pr 98.3 0.0006 1.3E-08 66.3 25.4 153 49-232 222-384 (448)
52 PRK05137 tolB translocation pr 98.3 0.00039 8.5E-09 67.3 24.1 180 48-266 205-394 (435)
53 KOG0291 WD40-repeat-containing 98.3 0.00036 7.9E-09 69.0 22.5 183 46-267 352-539 (893)
54 PF03088 Str_synth: Strictosid 98.3 8.6E-06 1.9E-10 60.4 8.9 75 100-180 1-88 (89)
55 KOG1446 Histone H3 (Lys4) meth 98.3 0.0021 4.5E-08 57.7 25.4 204 43-279 13-219 (311)
56 PF07433 DUF1513: Protein of u 98.2 0.00064 1.4E-08 61.7 22.5 193 50-267 56-274 (305)
57 TIGR03032 conserved hypothetic 98.2 0.00048 1.1E-08 62.3 19.9 177 58-267 20-258 (335)
58 KOG1446 Histone H3 (Lys4) meth 98.2 0.0035 7.5E-08 56.2 24.5 156 98-279 102-264 (311)
59 KOG0315 G-protein beta subunit 98.1 0.0025 5.4E-08 55.6 22.7 230 36-302 75-308 (311)
60 PRK04043 tolB translocation pr 98.1 0.0031 6.7E-08 60.8 26.3 177 49-267 192-386 (419)
61 PRK03629 tolB translocation pr 98.1 0.0046 9.9E-08 59.8 26.6 179 48-266 202-390 (429)
62 PRK04922 tolB translocation pr 98.1 0.0016 3.5E-08 63.0 23.4 179 48-266 207-396 (433)
63 PRK02888 nitrous-oxide reducta 98.1 0.00018 3.8E-09 71.0 16.5 139 124-268 296-450 (635)
64 PRK01742 tolB translocation pr 98.1 0.003 6.4E-08 61.1 25.0 176 47-266 206-388 (429)
65 PRK11138 outer membrane biogen 98.1 0.0032 6.8E-08 60.1 24.8 162 124-314 215-386 (394)
66 TIGR03118 PEPCTERM_chp_1 conse 98.1 0.0085 1.8E-07 54.1 25.7 253 45-312 23-322 (336)
67 PF07433 DUF1513: Protein of u 98.0 0.00054 1.2E-08 62.2 17.8 151 98-267 6-180 (305)
68 PRK02889 tolB translocation pr 98.0 0.0049 1.1E-07 59.6 25.5 179 49-267 200-389 (427)
69 PRK04792 tolB translocation pr 98.0 0.0094 2E-07 58.0 27.5 141 100-267 221-368 (448)
70 TIGR03300 assembly_YfgL outer 98.0 0.0069 1.5E-07 57.3 26.0 163 124-314 200-371 (377)
71 TIGR02800 propeller_TolB tol-p 98.0 0.0081 1.8E-07 57.5 26.4 180 48-267 193-383 (417)
72 PF13449 Phytase-like: Esteras 98.0 0.00092 2E-08 62.2 18.9 167 98-267 21-232 (326)
73 PRK02889 tolB translocation pr 98.0 0.011 2.3E-07 57.2 26.9 138 99-263 198-341 (427)
74 PRK00178 tolB translocation pr 98.0 0.0049 1.1E-07 59.5 24.4 178 48-265 202-389 (430)
75 PRK11138 outer membrane biogen 98.0 0.007 1.5E-07 57.8 25.1 188 56-279 121-314 (394)
76 PRK03629 tolB translocation pr 98.0 0.018 3.8E-07 55.8 27.9 138 99-264 201-345 (429)
77 TIGR03032 conserved hypothetic 98.0 0.0022 4.7E-08 58.2 19.6 145 46-219 104-260 (335)
78 PRK05137 tolB translocation pr 97.9 0.0042 9E-08 60.2 23.2 141 99-266 204-351 (435)
79 PRK04922 tolB translocation pr 97.9 0.014 2.9E-07 56.6 26.6 141 99-266 206-353 (433)
80 KOG0315 G-protein beta subunit 97.9 0.0017 3.7E-08 56.6 17.4 173 57-267 10-185 (311)
81 PF13360 PQQ_2: PQQ-like domai 97.9 0.014 2.9E-07 51.1 26.3 208 65-311 2-219 (238)
82 KOG0279 G protein beta subunit 97.9 0.012 2.5E-07 52.3 22.6 232 40-309 59-300 (315)
83 KOG0291 WD40-repeat-containing 97.9 0.0095 2.1E-07 59.3 24.1 195 48-279 311-512 (893)
84 COG2133 Glucose/sorbosone dehy 97.9 0.00044 9.5E-09 65.2 14.5 170 46-230 178-397 (399)
85 KOG0318 WD40 repeat stress pro 97.9 0.02 4.2E-07 54.9 25.1 182 46-269 322-507 (603)
86 PF01436 NHL: NHL repeat; Int 97.8 2.6E-05 5.7E-10 44.7 3.5 27 150-176 2-28 (28)
87 PF13360 PQQ_2: PQQ-like domai 97.8 0.019 4E-07 50.3 25.8 198 51-279 32-232 (238)
88 TIGR03300 assembly_YfgL outer 97.8 0.03 6.5E-07 53.0 26.5 143 123-279 154-299 (377)
89 TIGR02800 propeller_TolB tol-p 97.8 0.035 7.5E-07 53.1 27.0 163 66-266 170-338 (417)
90 PRK01029 tolB translocation pr 97.8 0.026 5.6E-07 54.6 26.0 181 49-266 189-388 (428)
91 PRK01742 tolB translocation pr 97.8 0.026 5.6E-07 54.6 25.7 151 99-279 206-363 (429)
92 PF01436 NHL: NHL repeat; Int 97.8 5.4E-05 1.2E-09 43.4 4.2 27 201-227 2-28 (28)
93 KOG0318 WD40 repeat stress pro 97.8 0.0086 1.9E-07 57.3 20.8 189 44-269 405-593 (603)
94 KOG0278 Serine/threonine kinas 97.7 0.0014 3.1E-08 57.1 14.4 180 47-269 103-287 (334)
95 cd00216 PQQ_DH Dehydrogenases 97.7 0.042 9.1E-07 54.1 27.0 192 101-315 221-459 (488)
96 KOG2055 WD40 repeat protein [G 97.7 0.0057 1.2E-07 57.5 19.1 231 49-315 262-505 (514)
97 PF13449 Phytase-like: Esteras 97.7 0.012 2.6E-07 54.8 21.6 128 99-231 87-252 (326)
98 KOG0266 WD40 repeat-containing 97.7 0.013 2.8E-07 57.2 22.5 161 45-232 204-366 (456)
99 KOG0286 G-protein beta subunit 97.7 0.036 7.8E-07 49.6 26.8 229 45-314 56-294 (343)
100 TIGR03118 PEPCTERM_chp_1 conse 97.7 0.022 4.8E-07 51.5 21.4 206 91-312 19-268 (336)
101 COG3823 Glutamine cyclotransfe 97.7 0.0014 3E-08 55.8 13.1 121 99-228 133-257 (262)
102 PTZ00421 coronin; Provisional 97.7 0.071 1.5E-06 52.5 29.4 207 46-279 77-292 (493)
103 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.08 1.7E-06 52.6 28.9 82 101-183 238-338 (527)
104 PRK00178 tolB translocation pr 97.6 0.072 1.6E-06 51.4 27.2 142 99-267 201-349 (430)
105 KOG0643 Translation initiation 97.6 0.028 6E-07 49.7 20.2 190 48-268 14-209 (327)
106 KOG0286 G-protein beta subunit 97.6 0.04 8.6E-07 49.3 21.2 185 46-267 147-333 (343)
107 KOG1407 WD40 repeat protein [F 97.5 0.034 7.4E-07 49.0 19.8 188 46-269 22-209 (313)
108 KOG0266 WD40 repeat-containing 97.5 0.04 8.6E-07 53.8 23.0 186 49-267 164-352 (456)
109 KOG0282 mRNA splicing factor [ 97.5 0.0014 3.1E-08 61.7 12.1 203 48-288 262-469 (503)
110 PF05787 DUF839: Bacterial pro 97.5 0.0028 6.1E-08 62.6 14.7 122 98-219 351-521 (524)
111 KOG0278 Serine/threonine kinas 97.5 0.012 2.6E-07 51.4 16.6 145 50-227 149-294 (334)
112 KOG2055 WD40 repeat protein [G 97.4 0.022 4.8E-07 53.7 18.5 186 48-269 217-407 (514)
113 cd00216 PQQ_DH Dehydrogenases 97.4 0.038 8.2E-07 54.4 21.4 129 123-270 310-458 (488)
114 KOG0279 G protein beta subunit 97.4 0.085 1.8E-06 46.9 20.7 168 35-232 96-264 (315)
115 PTZ00420 coronin; Provisional 97.4 0.18 4E-06 50.4 28.8 215 38-279 68-295 (568)
116 PF06433 Me-amine-dh_H: Methyl 97.4 0.12 2.5E-06 47.9 22.3 213 36-279 81-322 (342)
117 PRK04043 tolB translocation pr 97.4 0.06 1.3E-06 51.9 21.7 151 49-232 237-402 (419)
118 KOG0289 mRNA splicing factor [ 97.3 0.14 3E-06 48.3 22.2 151 98-272 305-455 (506)
119 KOG0275 Conserved WD40 repeat- 97.3 0.0053 1.2E-07 55.4 12.4 163 44-231 213-379 (508)
120 KOG1274 WD40 repeat protein [G 97.2 0.15 3.4E-06 52.0 22.9 201 48-285 17-225 (933)
121 COG3490 Uncharacterized protei 97.2 0.015 3.2E-07 52.0 13.8 154 98-267 69-243 (366)
122 PF02333 Phytase: Phytase; In 97.2 0.11 2.3E-06 49.0 20.3 164 122-302 76-264 (381)
123 PF06433 Me-amine-dh_H: Methyl 97.2 0.2 4.4E-06 46.4 23.0 150 56-230 3-165 (342)
124 PF02333 Phytase: Phytase; In 97.1 0.085 1.8E-06 49.7 19.1 139 98-258 157-319 (381)
125 PF05694 SBP56: 56kDa selenium 97.1 0.15 3.3E-06 48.5 20.7 237 62-314 94-395 (461)
126 KOG0272 U4/U6 small nuclear ri 97.1 0.058 1.3E-06 50.4 17.3 183 48-269 179-365 (459)
127 KOG0772 Uncharacterized conser 97.1 0.082 1.8E-06 50.7 18.4 212 37-268 160-383 (641)
128 PF05787 DUF839: Bacterial pro 97.1 0.0052 1.1E-07 60.7 11.0 70 199-268 348-454 (524)
129 PF05694 SBP56: 56kDa selenium 97.1 0.11 2.3E-06 49.5 19.1 210 46-267 131-392 (461)
130 KOG0282 mRNA splicing factor [ 97.0 0.01 2.2E-07 56.2 12.1 195 37-269 207-405 (503)
131 COG3211 PhoX Predicted phospha 97.0 0.01 2.3E-07 57.6 12.4 116 98-222 418-576 (616)
132 COG3211 PhoX Predicted phospha 97.0 0.0065 1.4E-07 59.0 10.8 111 199-310 415-571 (616)
133 PF01731 Arylesterase: Arylest 97.0 0.008 1.7E-07 44.3 8.8 32 199-230 52-84 (86)
134 KOG2110 Uncharacterized conser 96.9 0.12 2.6E-06 47.6 17.2 170 35-230 70-248 (391)
135 COG3292 Predicted periplasmic 96.9 0.039 8.5E-07 53.7 14.6 150 48-230 168-317 (671)
136 PLN00181 protein SPA1-RELATED; 96.8 0.57 1.2E-05 49.0 24.6 186 48-268 536-727 (793)
137 KOG2096 WD40 repeat protein [G 96.8 0.31 6.8E-06 44.3 19.1 213 46-279 134-362 (420)
138 KOG0772 Uncharacterized conser 96.8 0.11 2.4E-06 49.9 16.9 163 49-231 273-446 (641)
139 KOG1539 WD repeat protein [Gen 96.8 0.092 2E-06 53.1 16.6 183 46-267 450-635 (910)
140 PTZ00421 coronin; Provisional 96.7 0.72 1.6E-05 45.5 27.7 158 46-232 127-292 (493)
141 KOG0292 Vesicle coat complex C 96.7 0.42 9.1E-06 49.1 20.7 65 42-117 7-71 (1202)
142 PLN00181 protein SPA1-RELATED; 96.7 1.1 2.3E-05 47.0 29.2 163 46-232 485-650 (793)
143 PF14269 Arylsulfotran_2: Aryl 96.6 0.13 2.9E-06 47.1 16.1 129 45-183 144-293 (299)
144 COG1520 FOG: WD40-like repeat 96.6 0.65 1.4E-05 43.9 23.5 108 104-232 65-173 (370)
145 COG3292 Predicted periplasmic 96.6 0.023 5E-07 55.2 10.9 145 98-270 166-310 (671)
146 KOG2110 Uncharacterized conser 96.6 0.4 8.7E-06 44.3 18.3 141 98-267 89-236 (391)
147 COG1520 FOG: WD40-like repeat 96.6 0.69 1.5E-05 43.7 24.3 152 52-233 65-220 (370)
148 TIGR02276 beta_rpt_yvtn 40-res 96.5 0.014 2.9E-07 36.4 6.4 41 210-258 1-42 (42)
149 smart00284 OLF Olfactomedin-li 96.5 0.4 8.8E-06 42.7 17.7 144 109-270 84-245 (255)
150 PTZ00420 coronin; Provisional 96.5 1.1 2.3E-05 45.0 23.6 158 46-232 127-295 (568)
151 PRK01029 tolB translocation pr 96.4 1 2.2E-05 43.6 26.2 138 102-266 190-344 (428)
152 KOG0263 Transcription initiati 96.3 0.38 8.2E-06 48.3 17.8 184 47-269 454-639 (707)
153 KOG0272 U4/U6 small nuclear ri 96.3 0.13 2.9E-06 48.1 13.7 183 48-267 265-448 (459)
154 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 0.7 1.5E-05 46.0 19.8 111 55-183 69-194 (527)
155 KOG0293 WD40 repeat-containing 96.1 0.44 9.6E-06 44.7 16.0 152 49-232 274-427 (519)
156 KOG0271 Notchless-like WD40 re 96.1 0.78 1.7E-05 42.8 17.2 233 45-310 158-426 (480)
157 KOG2106 Uncharacterized conser 96.0 1.6 3.5E-05 42.2 19.8 139 98-270 370-512 (626)
158 PRK13616 lipoprotein LpqB; Pro 96.0 0.99 2.1E-05 45.5 19.3 143 150-310 350-513 (591)
159 KOG1273 WD40 repeat protein [G 95.9 0.99 2.2E-05 41.1 17.0 156 48-230 69-226 (405)
160 KOG0296 Angio-associated migra 95.9 1.4 3E-05 40.8 22.0 156 46-232 66-222 (399)
161 KOG0296 Angio-associated migra 95.9 1.4 3.1E-05 40.8 23.8 77 49-141 153-229 (399)
162 smart00135 LY Low-density lipo 95.9 0.023 4.9E-07 35.3 4.9 32 200-231 8-40 (43)
163 COG3490 Uncharacterized protei 95.9 0.65 1.4E-05 41.8 15.4 150 96-261 161-332 (366)
164 KOG0283 WD40 repeat-containing 95.9 0.85 1.8E-05 46.1 17.9 187 49-268 374-565 (712)
165 KOG0643 Translation initiation 95.8 1.3 2.8E-05 39.5 20.8 189 98-310 95-304 (327)
166 smart00135 LY Low-density lipo 95.8 0.02 4.3E-07 35.6 4.4 33 149-181 8-41 (43)
167 KOG0639 Transducin-like enhanc 95.8 0.64 1.4E-05 44.8 15.9 221 44-310 465-691 (705)
168 KOG0639 Transducin-like enhanc 95.8 0.1 2.3E-06 49.9 10.6 190 38-269 503-694 (705)
169 KOG2048 WD40 repeat protein [G 95.6 0.65 1.4E-05 46.1 15.7 162 48-232 386-550 (691)
170 KOG0293 WD40 repeat-containing 95.6 0.78 1.7E-05 43.1 15.4 181 49-267 229-413 (519)
171 KOG0263 Transcription initiati 95.5 2.7 5.9E-05 42.4 19.9 247 34-316 366-642 (707)
172 PF00058 Ldl_recept_b: Low-den 95.5 0.08 1.7E-06 33.3 6.3 41 212-259 1-42 (42)
173 PF05935 Arylsulfotrans: Aryls 95.5 1.3 2.8E-05 43.6 17.8 120 102-232 153-303 (477)
174 KOG0646 WD40 repeat protein [G 95.5 2.5 5.3E-05 40.4 19.0 215 24-269 52-297 (476)
175 KOG1539 WD repeat protein [Gen 95.4 0.3 6.5E-06 49.5 12.9 150 46-228 495-646 (910)
176 KOG0646 WD40 repeat protein [G 95.4 1.4 3.1E-05 41.9 16.7 168 48-232 127-309 (476)
177 PF08662 eIF2A: Eukaryotic tra 95.4 1.3 2.8E-05 37.9 15.6 118 125-268 40-162 (194)
178 KOG2106 Uncharacterized conser 95.4 1.8 3.9E-05 41.9 17.3 152 44-230 368-521 (626)
179 KOG2048 WD40 repeat protein [G 95.4 3.2 7E-05 41.4 20.8 194 45-268 70-265 (691)
180 KOG0310 Conserved WD40 repeat- 95.4 2.7 5.9E-05 40.3 18.7 194 48-279 72-269 (487)
181 COG4946 Uncharacterized protei 95.4 2.8 6.1E-05 40.3 20.4 136 124-279 287-433 (668)
182 KOG0289 mRNA splicing factor [ 95.3 2.8 6.1E-05 39.8 20.1 187 48-267 307-494 (506)
183 KOG2139 WD40 repeat protein [G 95.2 2.7 5.8E-05 39.1 20.3 156 45-223 196-369 (445)
184 KOG1274 WD40 repeat protein [G 95.1 1.4 3E-05 45.3 16.5 160 48-231 100-263 (933)
185 PF01731 Arylesterase: Arylest 95.1 0.18 3.9E-06 37.1 7.8 47 123-177 35-82 (86)
186 COG4946 Uncharacterized protei 95.1 3.5 7.6E-05 39.7 21.3 142 154-321 366-517 (668)
187 KOG0271 Notchless-like WD40 re 95.0 1.1 2.4E-05 41.8 14.4 154 48-231 119-277 (480)
188 KOG2919 Guanine nucleotide-bin 95.0 1.2 2.6E-05 40.8 14.2 186 53-268 120-316 (406)
189 PRK13684 Ycf48-like protein; P 95.0 3.1 6.8E-05 38.8 27.7 188 46-272 47-237 (334)
190 KOG0319 WD40-repeat-containing 94.9 0.94 2E-05 45.5 14.4 180 50-266 25-209 (775)
191 COG4247 Phy 3-phytase (myo-ino 94.8 2.9 6.2E-05 37.2 17.1 115 166-289 119-247 (364)
192 COG0823 TolB Periplasmic compo 94.6 4.8 0.0001 38.9 19.1 157 46-232 194-360 (425)
193 KOG0285 Pleiotropic regulator 94.4 4.2 9.1E-05 37.8 17.3 183 46-267 153-337 (460)
194 KOG0284 Polyadenylation factor 94.4 0.45 9.8E-06 44.5 10.4 182 48-267 100-282 (464)
195 TIGR02276 beta_rpt_yvtn 40-res 94.4 0.27 5.8E-06 30.3 6.5 41 107-158 2-42 (42)
196 KOG0273 Beta-transducin family 94.4 5 0.00011 38.5 24.0 146 46-227 237-386 (524)
197 PHA02713 hypothetical protein; 94.4 6.3 0.00014 39.6 20.1 180 55-268 303-520 (557)
198 PF08662 eIF2A: Eukaryotic tra 94.2 3.1 6.7E-05 35.5 18.6 99 98-219 61-163 (194)
199 KOG0316 Conserved WD40 repeat- 94.2 3.5 7.7E-05 36.2 16.0 171 63-267 78-255 (307)
200 KOG1273 WD40 repeat protein [G 94.2 4.4 9.6E-05 37.0 19.6 188 46-269 25-216 (405)
201 KOG4649 PQQ (pyrrolo-quinoline 94.2 4 8.6E-05 36.5 16.7 146 50-232 16-167 (354)
202 PF02191 OLF: Olfactomedin-lik 94.1 4.1 8.9E-05 36.4 18.1 149 101-270 73-240 (250)
203 KOG0275 Conserved WD40 repeat- 93.9 2.1 4.6E-05 39.1 13.3 153 44-222 348-501 (508)
204 KOG4378 Nuclear protein COP1 [ 93.8 0.92 2E-05 43.7 11.4 112 50-182 170-283 (673)
205 KOG0316 Conserved WD40 repeat- 93.7 4.6 0.0001 35.5 16.6 190 48-279 21-215 (307)
206 KOG0265 U5 snRNP-specific prot 93.6 5.6 0.00012 36.1 16.7 184 46-267 49-234 (338)
207 PF14517 Tachylectin: Tachylec 93.6 0.32 7E-06 42.5 7.4 163 47-231 36-207 (229)
208 KOG1407 WD40 repeat protein [F 93.5 5.2 0.00011 35.7 17.3 173 49-261 111-284 (313)
209 COG0823 TolB Periplasmic compo 93.4 1.3 2.8E-05 42.8 12.0 119 125-267 219-343 (425)
210 KOG0303 Actin-binding protein 93.4 7.1 0.00015 36.8 17.1 195 38-267 125-327 (472)
211 PF00058 Ldl_recept_b: Low-den 93.4 0.31 6.7E-06 30.6 5.3 41 161-210 1-42 (42)
212 KOG4441 Proteins containing BT 93.4 9.2 0.0002 38.5 18.4 187 48-268 326-530 (571)
213 PF14583 Pectate_lyase22: Olig 93.2 6.2 0.00013 37.4 15.7 133 35-187 21-185 (386)
214 smart00284 OLF Olfactomedin-li 93.1 6.1 0.00013 35.3 17.2 155 56-229 84-251 (255)
215 TIGR03074 PQQ_membr_DH membran 93.1 3.7 8E-05 42.8 15.4 68 109-183 195-283 (764)
216 PF00930 DPPIV_N: Dipeptidyl p 93.1 7.8 0.00017 36.3 20.2 145 102-267 189-345 (353)
217 PF10647 Gmad1: Lipoprotein Lp 92.9 6.5 0.00014 35.1 17.3 142 151-310 25-182 (253)
218 KOG3545 Olfactomedin and relat 92.8 2.5 5.5E-05 37.3 11.7 132 124-270 88-239 (249)
219 KOG0640 mRNA cleavage stimulat 92.4 8.5 0.00018 35.2 16.8 195 49-267 117-323 (430)
220 KOG0284 Polyadenylation factor 92.4 2.7 5.9E-05 39.5 11.9 183 47-267 183-368 (464)
221 KOG0294 WD40 repeat-containing 92.1 9.3 0.0002 35.0 15.9 138 99-267 46-186 (362)
222 PHA02713 hypothetical protein; 92.1 14 0.00031 37.0 21.8 99 67-181 273-377 (557)
223 KOG4649 PQQ (pyrrolo-quinoline 92.1 8.6 0.00019 34.4 15.1 101 56-179 63-165 (354)
224 PHA02790 Kelch-like protein; P 91.9 14 0.00029 36.4 20.1 177 109-312 272-454 (480)
225 PF14583 Pectate_lyase22: Olig 91.9 3.1 6.7E-05 39.4 12.0 121 128-266 14-141 (386)
226 KOG0310 Conserved WD40 repeat- 91.6 13 0.00029 35.7 20.0 181 48-268 114-298 (487)
227 KOG0268 Sof1-like rRNA process 91.6 2.4 5.3E-05 39.3 10.5 142 100-268 191-334 (433)
228 KOG0294 WD40 repeat-containing 91.5 11 0.00024 34.5 17.2 176 48-268 47-227 (362)
229 KOG0771 Prolactin regulatory e 91.5 12 0.00025 35.4 15.0 183 49-262 149-337 (398)
230 KOG0319 WD40-repeat-containing 91.4 14 0.0003 37.6 16.2 155 49-232 110-270 (775)
231 PF06739 SBBP: Beta-propeller 91.3 0.18 3.9E-06 30.9 2.2 21 150-170 13-33 (38)
232 KOG0647 mRNA export protein (c 91.3 11 0.00025 34.2 21.9 94 35-143 17-113 (347)
233 PF14269 Arylsulfotran_2: Aryl 91.0 12 0.00027 34.3 15.0 125 98-232 145-291 (299)
234 KOG0640 mRNA cleavage stimulat 91.0 12 0.00026 34.2 14.2 190 47-267 219-414 (430)
235 PF14339 DUF4394: Domain of un 91.0 11 0.00023 33.3 19.5 174 37-233 17-216 (236)
236 KOG2096 WD40 repeat protein [G 90.9 13 0.00028 34.2 18.0 161 46-227 88-257 (420)
237 COG5276 Uncharacterized conser 90.8 13 0.00028 33.9 15.5 160 150-330 87-253 (370)
238 KOG2321 WD40 repeat protein [G 90.7 14 0.00031 36.5 15.3 176 56-267 146-332 (703)
239 KOG4378 Nuclear protein COP1 [ 90.6 14 0.0003 36.0 14.8 103 155-273 170-274 (673)
240 PF02191 OLF: Olfactomedin-lik 90.5 12 0.00027 33.3 17.6 148 55-220 78-239 (250)
241 KOG0273 Beta-transducin family 90.5 17 0.00037 35.0 15.8 156 46-229 361-522 (524)
242 KOG0285 Pleiotropic regulator 90.4 15 0.00033 34.2 19.3 194 46-279 195-391 (460)
243 KOG0645 WD40 repeat protein [G 90.2 13 0.00029 33.3 16.8 153 46-226 63-223 (312)
244 PHA03098 kelch-like protein; P 90.2 21 0.00045 35.5 19.8 152 55-232 294-466 (534)
245 KOG0973 Histone transcription 90.1 12 0.00026 39.3 15.1 156 48-222 73-242 (942)
246 PRK13616 lipoprotein LpqB; Pro 90.0 24 0.00051 35.8 23.6 193 46-274 351-564 (591)
247 KOG0268 Sof1-like rRNA process 89.7 5.4 0.00012 37.1 11.0 178 48-269 70-249 (433)
248 KOG0645 WD40 repeat protein [G 89.6 15 0.00033 33.0 23.8 190 46-267 16-214 (312)
249 KOG1215 Low-density lipoprotei 89.3 33 0.00072 36.5 19.2 191 98-318 438-634 (877)
250 KOG3545 Olfactomedin and relat 89.1 12 0.00025 33.2 12.3 115 100-229 125-245 (249)
251 KOG2139 WD40 repeat protein [G 89.1 8.3 0.00018 36.0 11.7 147 98-266 197-362 (445)
252 KOG0918 Selenium-binding prote 89.1 16 0.00034 34.7 13.7 106 124-232 229-344 (476)
253 KOG0306 WD40-repeat-containing 89.0 29 0.00064 35.5 18.1 197 35-268 364-569 (888)
254 KOG0303 Actin-binding protein 88.6 22 0.00048 33.6 17.3 194 49-276 86-293 (472)
255 PF14517 Tachylectin: Tachylec 88.6 12 0.00026 32.9 12.0 107 150-270 34-150 (229)
256 KOG1215 Low-density lipoprotei 88.5 35 0.00075 36.3 18.0 183 48-267 440-627 (877)
257 KOG0264 Nucleosome remodeling 88.1 25 0.00054 33.5 14.5 166 47-231 180-348 (422)
258 KOG1538 Uncharacterized conser 88.0 33 0.00071 34.8 21.8 225 46-309 14-279 (1081)
259 KOG0299 U3 snoRNP-associated p 87.6 27 0.00059 33.5 18.8 222 49-310 207-443 (479)
260 KOG1538 Uncharacterized conser 87.5 35 0.00076 34.6 19.2 164 98-279 14-212 (1081)
261 KOG1009 Chromatin assembly com 87.1 28 0.0006 33.0 16.0 109 44-168 123-249 (434)
262 COG5276 Uncharacterized conser 87.0 24 0.00052 32.2 19.6 180 99-310 89-273 (370)
263 KOG1963 WD40 repeat protein [G 87.0 41 0.00088 34.8 23.1 166 49-232 210-377 (792)
264 KOG2321 WD40 repeat protein [G 86.9 35 0.00075 34.0 15.3 102 124-232 155-260 (703)
265 KOG3881 Uncharacterized conser 86.4 30 0.00064 32.6 17.4 130 123-268 172-309 (412)
266 KOG1445 Tumor-specific antigen 86.4 11 0.00024 37.8 11.4 153 40-212 716-871 (1012)
267 KOG0973 Histone transcription 86.2 9.2 0.0002 40.2 11.4 119 150-282 130-257 (942)
268 KOG0283 WD40 repeat-containing 85.5 47 0.001 34.1 17.1 152 100-276 373-531 (712)
269 PF10647 Gmad1: Lipoprotein Lp 85.2 27 0.00058 31.1 21.9 163 46-232 25-199 (253)
270 KOG3881 Uncharacterized conser 85.0 16 0.00035 34.3 11.3 116 46-180 204-321 (412)
271 TIGR03548 mutarot_permut cycli 84.8 32 0.00069 31.6 20.6 114 55-180 72-195 (323)
272 KOG0642 Cell-cycle nuclear pro 84.8 43 0.00092 33.1 15.3 200 48-270 348-552 (577)
273 KOG0650 WD40 repeat nucleolar 84.3 37 0.0008 33.9 13.9 189 98-310 402-625 (733)
274 PF01011 PQQ: PQQ enzyme repea 84.3 2.3 5E-05 25.7 4.0 29 109-143 1-29 (38)
275 PLN00033 photosystem II stabil 83.5 43 0.00094 32.1 16.7 106 201-314 281-391 (398)
276 PF06739 SBBP: Beta-propeller 83.1 1 2.2E-05 27.6 2.0 19 251-269 14-32 (38)
277 KOG0288 WD40 repeat protein Ti 83.1 42 0.00091 31.9 13.2 122 124-262 322-444 (459)
278 KOG0292 Vesicle coat complex C 82.7 68 0.0015 33.8 21.0 111 46-167 252-384 (1202)
279 PF00930 DPPIV_N: Dipeptidyl p 82.3 44 0.00094 31.2 17.8 142 46-216 185-343 (353)
280 KOG0299 U3 snoRNP-associated p 82.2 50 0.0011 31.8 15.1 115 98-227 329-453 (479)
281 KOG1188 WD40 repeat protein [G 81.9 44 0.00095 31.0 14.1 147 57-232 41-198 (376)
282 PF08553 VID27: VID27 cytoplas 81.6 50 0.0011 34.6 14.5 155 44-229 480-646 (794)
283 PRK13614 lipoprotein LpqB; Pro 81.4 64 0.0014 32.6 16.7 144 152-310 345-502 (573)
284 PF14298 DUF4374: Domain of un 81.2 52 0.0011 31.8 13.5 125 47-180 277-425 (435)
285 PLN00033 photosystem II stabil 80.7 55 0.0012 31.4 28.4 103 203-314 241-348 (398)
286 PF02897 Peptidase_S9_N: Proly 80.6 52 0.0011 31.3 13.9 165 48-233 230-407 (414)
287 PF08553 VID27: VID27 cytoplas 80.4 81 0.0018 33.1 16.5 148 98-268 482-637 (794)
288 PF14339 DUF4394: Domain of un 80.0 42 0.00091 29.6 21.1 127 97-232 27-166 (236)
289 KOG1009 Chromatin assembly com 79.5 45 0.00098 31.6 12.1 98 97-213 66-178 (434)
290 PHA02790 Kelch-like protein; P 79.5 66 0.0014 31.6 16.2 105 109-232 363-472 (480)
291 KOG0281 Beta-TrCP (transducin 79.4 18 0.00038 33.7 9.3 143 54-232 245-390 (499)
292 KOG1963 WD40 repeat protein [G 79.4 25 0.00054 36.3 11.2 115 47-178 254-374 (792)
293 KOG0313 Microtubule binding pr 79.3 57 0.0012 30.8 19.4 161 46-232 195-378 (423)
294 KOG2111 Uncharacterized conser 79.2 52 0.0011 30.3 19.3 140 98-267 96-244 (346)
295 KOG1036 Mitotic spindle checkp 79.1 51 0.0011 30.1 14.9 185 50-266 100-291 (323)
296 PRK13613 lipoprotein LpqB; Pro 78.8 79 0.0017 32.1 16.3 94 207-309 415-522 (599)
297 TIGR03074 PQQ_membr_DH membran 78.4 92 0.002 32.7 26.4 163 55-233 194-425 (764)
298 KOG1408 WD40 repeat protein [F 78.3 28 0.00062 35.5 11.0 113 98-230 598-713 (1080)
299 KOG0308 Conserved WD40 repeat- 78.3 81 0.0018 31.9 15.7 122 46-179 119-243 (735)
300 KOG0918 Selenium-binding prote 78.3 13 0.00027 35.3 8.1 71 150-220 312-409 (476)
301 KOG0307 Vesicle coat complex C 77.9 24 0.00052 37.6 10.8 160 48-230 68-240 (1049)
302 PRK13684 Ycf48-like protein; P 77.4 62 0.0013 30.1 23.6 147 150-314 173-323 (334)
303 KOG0301 Phospholipase A2-activ 77.0 90 0.002 31.8 16.0 116 98-245 142-258 (745)
304 smart00564 PQQ beta-propeller 76.4 6.6 0.00014 22.4 4.0 25 109-139 7-31 (33)
305 KOG0771 Prolactin regulatory e 76.2 72 0.0016 30.3 12.8 146 46-212 188-336 (398)
306 KOG2394 WD40 protein DMR-N9 [G 76.1 11 0.00025 36.8 7.5 70 149-227 290-359 (636)
307 PLN02153 epithiospecifier prot 75.7 68 0.0015 29.7 19.7 72 109-180 86-168 (341)
308 PHA03098 kelch-like protein; P 74.9 92 0.002 30.8 20.3 116 101-232 289-416 (534)
309 COG4247 Phy 3-phytase (myo-ino 74.5 65 0.0014 28.9 14.0 140 159-310 65-222 (364)
310 PF07494 Reg_prop: Two compone 74.3 5.9 0.00013 21.4 3.1 20 96-116 4-23 (24)
311 KOG0307 Vesicle coat complex C 74.3 16 0.00036 38.7 8.6 158 47-232 119-286 (1049)
312 PF13570 PQQ_3: PQQ-like domai 74.2 14 0.0003 22.4 5.2 25 153-179 15-39 (40)
313 KOG0295 WD40 repeat-containing 73.5 81 0.0018 29.6 14.8 159 48-232 197-366 (406)
314 PF05935 Arylsulfotrans: Aryls 73.1 99 0.0021 30.4 22.5 161 100-267 193-434 (477)
315 KOG4328 WD40 protein [Function 72.5 96 0.0021 30.0 16.1 213 37-279 227-451 (498)
316 PF05567 Neisseria_PilC: Neiss 72.3 10 0.00023 35.4 6.2 58 122-180 179-240 (335)
317 KOG4441 Proteins containing BT 72.1 1.2E+02 0.0025 30.7 22.4 211 66-312 301-530 (571)
318 KOG0302 Ribosome Assembly prot 71.8 92 0.002 29.5 14.1 169 36-231 203-379 (440)
319 PF11161 DUF2944: Protein of u 71.7 27 0.00058 29.5 7.8 71 203-278 64-136 (187)
320 KOG0288 WD40 repeat protein Ti 71.6 96 0.0021 29.6 14.6 144 48-219 306-451 (459)
321 PF00400 WD40: WD domain, G-be 71.2 18 0.0004 21.1 5.6 34 39-72 6-39 (39)
322 KOG0281 Beta-TrCP (transducin 70.7 16 0.00036 33.9 6.8 145 98-279 239-390 (499)
323 TIGR03803 Gloeo_Verruco Gloeo_ 70.6 12 0.00025 22.3 3.9 25 160-184 1-30 (34)
324 COG4222 Uncharacterized protei 70.2 53 0.0011 31.4 10.4 56 164-219 159-219 (391)
325 KOG0305 Anaphase promoting com 69.7 1.2E+02 0.0026 29.9 14.5 154 45-228 302-461 (484)
326 KOG4328 WD40 protein [Function 69.5 1.1E+02 0.0024 29.6 13.0 120 46-180 371-496 (498)
327 TIGR02608 delta_60_rpt delta-6 69.5 7.5 0.00016 25.9 3.3 31 152-182 3-40 (55)
328 PF15416 DUF4623: Domain of un 69.4 35 0.00076 31.7 8.6 73 108-180 193-272 (442)
329 KOG0265 U5 snRNP-specific prot 68.9 94 0.002 28.5 20.5 226 48-310 94-335 (338)
330 KOG4497 Uncharacterized conser 67.9 1.1E+02 0.0023 28.6 11.2 138 50-219 14-153 (447)
331 TIGR03547 muta_rot_YjhT mutatr 67.4 1E+02 0.0023 28.4 24.5 73 55-137 17-98 (346)
332 KOG2315 Predicted translation 66.2 1.1E+02 0.0024 30.3 11.7 101 48-172 274-377 (566)
333 KOG0650 WD40 repeat nucleolar 65.0 37 0.0008 34.0 8.3 111 46-179 523-637 (733)
334 PRK14131 N-acetylneuraminic ac 64.6 1.3E+02 0.0028 28.4 24.2 73 55-137 38-119 (376)
335 KOG3914 WD repeat protein WDR4 64.4 1.3E+02 0.0029 28.5 13.2 113 46-177 64-179 (390)
336 KOG4227 WD40 repeat protein [G 63.2 1.3E+02 0.0029 28.5 11.2 114 47-177 108-223 (609)
337 KOG2395 Protein involved in va 62.8 94 0.002 30.8 10.5 125 123-267 355-489 (644)
338 PF11768 DUF3312: Protein of u 62.7 49 0.0011 32.8 8.8 69 98-179 261-329 (545)
339 KOG0306 WD40-repeat-containing 62.5 2E+02 0.0043 29.9 17.3 143 98-269 510-654 (888)
340 KOG1310 WD40 repeat protein [G 62.1 67 0.0015 31.9 9.4 125 98-231 52-179 (758)
341 PF07202 Tcp10_C: T-complex pr 61.3 1E+02 0.0022 26.1 11.0 17 169-185 35-51 (179)
342 KOG0641 WD40 repeat protein [G 60.6 1.2E+02 0.0026 26.7 10.6 74 98-182 233-306 (350)
343 KOG2111 Uncharacterized conser 59.9 1.5E+02 0.0032 27.5 20.3 201 49-286 10-221 (346)
344 TIGR03547 muta_rot_YjhT mutatr 59.0 1.5E+02 0.0032 27.4 18.5 39 124-166 168-206 (346)
345 KOG2394 WD40 protein DMR-N9 [G 58.3 44 0.00096 32.9 7.5 93 46-159 292-384 (636)
346 KOG1445 Tumor-specific antigen 58.2 2.2E+02 0.0048 29.0 12.5 78 40-133 124-201 (1012)
347 KOG1272 WD40-repeat-containing 57.9 31 0.00067 33.4 6.3 66 98-175 295-360 (545)
348 KOG0267 Microtubule severing p 57.6 1.3E+02 0.0029 30.9 10.8 190 40-269 66-258 (825)
349 PF15232 DUF4585: Domain of un 56.9 28 0.0006 24.7 4.4 36 100-138 8-43 (75)
350 KOG1272 WD40-repeat-containing 56.2 50 0.0011 32.0 7.4 139 98-267 131-269 (545)
351 PF14870 PSII_BNR: Photosynthe 55.3 1.7E+02 0.0037 26.9 26.7 187 46-270 18-207 (302)
352 KOG0322 G-protein beta subunit 55.2 19 0.00042 32.2 4.2 66 98-174 253-318 (323)
353 KOG0264 Nucleosome remodeling 54.9 2E+02 0.0044 27.6 14.6 176 35-228 218-402 (422)
354 PF13964 Kelch_6: Kelch motif 54.7 23 0.0005 22.5 3.6 30 109-138 12-42 (50)
355 COG4993 Gcd Glucose dehydrogen 54.6 2.5E+02 0.0055 28.6 15.4 34 100-142 209-242 (773)
356 KOG1036 Mitotic spindle checkp 54.5 1.8E+02 0.0038 26.8 15.5 111 98-231 15-125 (323)
357 PF02897 Peptidase_S9_N: Proly 53.2 2.1E+02 0.0044 27.2 23.0 118 100-232 127-262 (414)
358 KOG1034 Transcriptional repres 51.3 18 0.00038 33.4 3.4 56 122-178 327-382 (385)
359 KOG1517 Guanine nucleotide bin 50.7 3.7E+02 0.008 29.4 14.7 157 97-269 1209-1371(1387)
360 PF13970 DUF4221: Domain of un 50.6 2.1E+02 0.0045 26.4 12.8 105 124-232 67-188 (333)
361 KOG1408 WD40 repeat protein [F 50.4 2.2E+02 0.0047 29.6 11.0 112 48-177 600-711 (1080)
362 KOG0322 G-protein beta subunit 49.8 64 0.0014 29.1 6.6 69 149-227 251-320 (323)
363 KOG0321 WD40 repeat-containing 49.6 2.4E+02 0.0051 28.7 11.0 32 200-232 271-303 (720)
364 KOG0295 WD40 repeat-containing 49.3 2.3E+02 0.0051 26.7 13.0 130 38-180 229-365 (406)
365 PF11768 DUF3312: Protein of u 47.2 2E+02 0.0044 28.7 10.2 71 150-231 260-330 (545)
366 PF14870 PSII_BNR: Photosynthe 46.7 2.4E+02 0.0051 26.0 22.7 143 150-312 145-294 (302)
367 PF07250 Glyoxal_oxid_N: Glyox 46.0 2.2E+02 0.0047 25.3 14.3 139 127-279 49-199 (243)
368 KOG3567 Peptidylglycine alpha- 45.6 33 0.00073 33.1 4.5 31 200-230 466-496 (501)
369 PRK12694 flgG flagellar basal 45.5 1.4E+02 0.003 26.7 8.4 64 150-217 90-160 (260)
370 PRK14131 N-acetylneuraminic ac 44.4 2.8E+02 0.006 26.1 17.1 40 124-167 189-228 (376)
371 PRK12816 flgG flagellar basal 44.4 79 0.0017 28.4 6.6 14 204-217 149-162 (264)
372 KOG0269 WD40 repeat-containing 41.3 3.1E+02 0.0068 28.5 10.6 185 46-269 178-368 (839)
373 KOG2919 Guanine nucleotide-bin 40.4 3.1E+02 0.0068 25.6 15.5 197 46-269 160-360 (406)
374 KOG1240 Protein kinase contain 39.8 4E+02 0.0088 29.5 11.5 54 123-179 1172-1225(1431)
375 TIGR02488 flgG_G_neg flagellar 39.7 1.5E+02 0.0033 26.4 7.7 64 150-217 88-158 (259)
376 KOG0649 WD40 repeat protein [G 38.3 3E+02 0.0064 24.7 12.6 121 39-184 151-279 (325)
377 KOG1230 Protein containing rep 36.2 4.1E+02 0.0089 25.7 13.8 149 101-267 71-249 (521)
378 PF08139 LPAM_1: Prokaryotic m 36.1 39 0.00084 18.6 2.0 16 5-20 4-19 (25)
379 KOG1517 Guanine nucleotide bin 35.7 6.3E+02 0.014 27.7 13.6 159 56-230 1221-1381(1387)
380 PF05567 Neisseria_PilC: Neiss 35.3 1.2E+02 0.0027 28.2 6.6 29 203-232 210-241 (335)
381 PRK12689 flgF flagellar basal 34.8 2.4E+02 0.0053 25.1 8.2 12 205-216 142-153 (253)
382 PF15390 DUF4613: Domain of un 34.7 2.1E+02 0.0044 29.0 8.0 66 197-266 335-401 (671)
383 KOG1230 Protein containing rep 34.6 4.4E+02 0.0095 25.6 15.8 108 22-138 41-168 (521)
384 PRK12690 flgF flagellar basal 34.2 2.2E+02 0.0048 25.1 7.7 13 204-216 136-148 (238)
385 PRK12817 flgG flagellar basal 33.8 2.4E+02 0.0052 25.2 8.0 15 204-218 152-166 (260)
386 PRK13615 lipoprotein LpqB; Pro 33.7 5.1E+02 0.011 26.1 16.6 16 207-222 379-394 (557)
387 KOG4497 Uncharacterized conser 33.1 1.5E+02 0.0033 27.6 6.5 59 200-266 91-150 (447)
388 PRK12636 flgG flagellar basal 32.5 2.9E+02 0.0063 24.7 8.4 13 205-217 150-162 (263)
389 PF01344 Kelch_1: Kelch motif; 31.7 1.2E+02 0.0027 18.4 6.5 33 109-141 12-45 (47)
390 KOG4190 Uncharacterized conser 31.2 2.9E+02 0.0063 27.7 8.4 123 48-183 788-911 (1034)
391 KOG1310 WD40 repeat protein [G 30.8 5.7E+02 0.012 25.8 11.1 158 46-222 52-222 (758)
392 PRK12642 flgF flagellar basal 30.7 1.8E+02 0.0039 25.7 6.6 17 150-167 74-90 (241)
393 PLN02193 nitrile-specifier pro 30.5 5.2E+02 0.011 25.2 20.2 115 109-232 229-353 (470)
394 PTZ00486 apyrase Superfamily; 30.3 2.9E+02 0.0063 25.9 7.9 53 211-267 124-180 (352)
395 PF03178 CPSF_A: CPSF A subuni 29.9 4.3E+02 0.0093 24.0 12.0 110 98-230 90-204 (321)
396 KOG0313 Microtubule binding pr 29.1 5.1E+02 0.011 24.7 11.6 122 35-177 251-374 (423)
397 PRK12691 flgG flagellar basal 28.7 1.5E+02 0.0033 26.5 5.9 13 204-216 147-159 (262)
398 PF06079 Apyrase: Apyrase; In 28.6 3.4E+02 0.0073 24.8 7.9 52 211-268 63-118 (291)
399 KOG2315 Predicted translation 28.2 6.2E+02 0.013 25.3 16.3 120 123-269 250-374 (566)
400 KOG1034 Transcriptional repres 28.2 1.1E+02 0.0023 28.5 4.7 27 203-229 356-382 (385)
401 PRK12693 flgG flagellar basal 27.8 3.4E+02 0.0073 24.2 7.9 13 205-217 148-160 (261)
402 PF12275 DUF3616: Protein of u 27.4 5.2E+02 0.011 24.2 11.9 86 43-134 168-268 (330)
403 PRK12692 flgG flagellar basal 26.8 2.7E+02 0.0059 24.9 7.1 13 204-216 147-159 (262)
404 PF03055 RPE65: Retinal pigmen 26.5 6.2E+02 0.013 24.8 10.8 75 101-183 125-207 (486)
405 PRK12818 flgG flagellar basal 26.4 2.3E+02 0.0049 25.3 6.5 13 204-216 154-166 (256)
406 PF05262 Borrelia_P83: Borreli 25.8 4.9E+02 0.011 25.8 9.0 95 66-179 375-472 (489)
407 KOG0379 Kelch repeat-containin 25.2 6.6E+02 0.014 24.7 10.9 102 67-180 140-250 (482)
408 PF13088 BNR_2: BNR repeat-lik 24.7 4.7E+02 0.01 22.8 9.0 108 49-165 163-275 (275)
409 PF15492 Nbas_N: Neuroblastoma 24.6 5.4E+02 0.012 23.4 9.6 77 155-243 3-81 (282)
410 KOG1063 RNA polymerase II elon 24.2 7.9E+02 0.017 25.4 10.1 116 99-225 270-388 (764)
411 KOG0290 Conserved WD40 repeat- 24.1 5.7E+02 0.012 23.6 10.0 100 128-230 177-318 (364)
412 PF12275 DUF3616: Protein of u 24.1 1.9E+02 0.0042 27.0 5.7 66 154-220 4-77 (330)
413 KOG0308 Conserved WD40 repeat- 23.9 8E+02 0.017 25.2 16.9 161 46-230 75-243 (735)
414 PRK12640 flgF flagellar basal 23.5 4.4E+02 0.0096 23.4 7.7 14 204-217 134-147 (246)
415 KOG0641 WD40 repeat protein [G 23.4 5.2E+02 0.011 22.8 23.9 54 211-268 193-250 (350)
416 PLN02153 epithiospecifier prot 23.4 5.8E+02 0.013 23.4 18.4 35 101-137 132-172 (341)
417 KOG0267 Microtubule severing p 23.2 4.8E+02 0.01 27.1 8.5 177 99-308 73-253 (825)
418 PF11725 AvrE: Pathogenicity f 23.2 9.1E+02 0.02 27.9 11.1 140 49-230 367-516 (1774)
419 KOG2314 Translation initiation 23.1 5.2E+02 0.011 26.0 8.5 100 154-269 450-557 (698)
420 KOG1188 WD40 repeat protein [G 22.7 6.4E+02 0.014 23.7 10.8 124 46-181 72-198 (376)
421 KOG0274 Cdc4 and related F-box 22.4 8E+02 0.017 24.6 13.8 145 51-232 336-484 (537)
422 TIGR03548 mutarot_permut cycli 21.1 6.3E+02 0.014 22.9 25.3 114 109-232 73-196 (323)
423 KOG0270 WD40 repeat-containing 20.8 7.8E+02 0.017 23.9 17.1 153 49-232 248-408 (463)
424 KOG4227 WD40 repeat protein [G 20.1 7.8E+02 0.017 23.6 13.0 73 98-179 107-179 (609)
No 1
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.97 E-value=3.2e-28 Score=217.44 Aligned_cols=229 Identities=27% Similarity=0.409 Sum_probs=165.3
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
+|||++|++ +|++|++++..++|+++++.+++. .....+ .|.|++++.++|++|+++..
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------~~~~~~-----~~~G~~~~~~~g~l~v~~~~------- 60 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--------EVIDLP-----GPNGMAFDRPDGRLYVADSG------- 60 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--------EEEESS-----SEEEEEEECTTSEEEEEETT-------
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeE--------EEEecC-----CCceEEEEccCCEEEEEEcC-------
Confidence 489999998 788999998899999999987651 233222 38999999334999999863
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC--------CeEEEEcCCCceEEEecCCCCCCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG--------SKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~--------~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
.+.++|+++++...............+|||+++|++|++|+|+... +.||+++++++......
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--------- 131 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD--------- 131 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE---------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec---------
Confidence 3566799999877666653111135799999999999999999754 78999999977655442
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCC-ccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEE
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVG-EGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARL 273 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~-~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~ 273 (332)
.+..||||++++|| .||++++..++|++++++.... -......+... ...+.||||++|++|+|||+... ....
T Consensus 132 --~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 132 --GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp --EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred --CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 23568999999999 9999999999999999974321 00111122333 12246999999999999999743 2344
Q ss_pred EEcCCCceEEEEEeeecCCCcccceEEEE---ECCeEEEEE
Q 020019 274 VESSDGWETAAVVAKFSGPVHRLATAATV---KDGRVYLNH 311 (332)
Q Consensus 274 v~~~dg~~~~~~~~~~~~~~~~~pt~va~---~~g~lyv~~ 311 (332)
++.++| +++..+..| ...||+++| +.++|||++
T Consensus 209 ~~~p~G----~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPDG----KLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETTS----CEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EECCCc----cEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 567888 455555555 458999999 348999965
No 2
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.6e-25 Score=202.66 Aligned_cols=255 Identities=20% Similarity=0.285 Sum_probs=184.0
Q ss_pred eEEEecCCccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 37 VYHYHSSSFFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
...+.....+.||+.|+++.+ +|++++..++|+++++.+++. .....|+. .+.++.++.. ++|+++.
T Consensus 17 ~~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--------~~~~~p~~---~~~~~~~d~~-g~Lv~~~ 84 (307)
T COG3386 17 VTLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKK--------RVFPSPGG---FSSGALIDAG-GRLIACE 84 (307)
T ss_pred eeEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCce--------EEEECCCC---cccceeecCC-CeEEEEc
Confidence 344455556889999999987 777789899999999986752 23334553 4678888885 8888886
Q ss_pred eCcCCCccceEEEEECCCCcE-EEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------CCeEEEEcCCCceE
Q 020019 116 ADVFGNKYSAVAAYDLSTWNR-LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------GSKIWKVGVKGEFL 183 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------~~~I~~v~~~g~~~ 183 (332)
.+ +..++.+++.. ....... +.....++||+.++++|++||++.. .|.||+++++|+..
T Consensus 85 ~g--------~~~~~~~~~~~~t~~~~~~-~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 85 HG--------VRLLDPDTGGKITLLAEPE-DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred cc--------cEEEeccCCceeEEecccc-CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 42 56677776665 3333332 2223489999999999999999877 36799999988877
Q ss_pred EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEEecCCCCCCCCeEEEeCC
Q 020019 184 SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 184 ~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
+.+.. ....+|||||+||| +||++++..++|+|++.+. +...+ ....+... ..-+.|||+++|.+
T Consensus 156 ~l~~~----------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~-~~~~~~~~-~~~G~PDG~~vDad 223 (307)
T COG3386 156 RLLDD----------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG-RRGFVDFD-EEPGLPDGMAVDAD 223 (307)
T ss_pred EeecC----------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC-cceEEEcc-CCCCCCCceEEeCC
Confidence 65532 24679999999999 9999999999999998873 22211 22223322 23368999999999
Q ss_pred CeEEEEe-CC-ceEEEEcCCCceEEEEEeeecCCCcccceEEEEEC---CeEEE-EEecCcccc-CCccceeeeeec
Q 020019 261 TKLVVAG-NP-SARLVESSDGWETAAVVAKFSGPVHRLATAATVKD---GRVYL-NHMLGFGYP-KKKHALVEAVFS 330 (332)
Q Consensus 261 G~l~va~-~~-~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~---g~lyv-~~~~g~~~~-~~~~~~~~~~~~ 330 (332)
|++|++. .+ ....++.++| +++..+..|. .+|++++|.+ ++||| +++.++. . ..+.+.+|.+|+
T Consensus 224 G~lw~~a~~~g~~v~~~~pdG----~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~~~~~-~~~~~~~~~G~lf~ 294 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPDG----KLLGEIKLPV-KRPTNPAFGGPDLNTLYITSARSGMS-RMLTADPLGGGLFS 294 (307)
T ss_pred CCEEEecccCCceEEEECCCC----cEEEEEECCC-CCCccceEeCCCcCEEEEEecCCCCC-ccccccccCceEEE
Confidence 9999654 33 2455688888 4555555563 6899999944 99999 6777776 5 446688888885
No 3
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=2.9e-18 Score=179.98 Aligned_cols=254 Identities=15% Similarity=0.151 Sum_probs=167.8
Q ss_pred ccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-c-cCc-C-------CCccceEEEeCCCCeEEE
Q 020019 45 FFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-D-LEL-T-------GNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 45 ~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~-~~~-~-------~~~~~gi~vd~~~g~l~v 113 (332)
.+|.++++|+. |++|+++..+++|+++|.++.. .. .+.. . .+. . -+.|.||+++++++.|||
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-----i~--~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-----IV--QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCCCCE-----EE--EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 48999999975 6788888889999999987432 11 1211 0 010 0 136999999987567999
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCC-----CC------CCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-C
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSG-----PS------DGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-G 180 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~-----~~------~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g 180 (332)
++.. ...|.++|+.++.+.....-.. .+ .....|.++++++ +|++||+|+.+++|++++.. |
T Consensus 641 aDt~-----n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 641 ADTE-----NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EeCC-----CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 9874 3568889998876544322100 00 0124689999999 57899999999999999986 4
Q ss_pred ceEEEecCCCCC----CcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEE------------
Q 020019 181 EFLSIISSPLFT----PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR------------ 243 (332)
Q Consensus 181 ~~~~~~~~~~~~----~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~------------ 243 (332)
....+..+.... .......+..|+||++++|| +|||++..+++|.+++++++. ...+.
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-----~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG-----SRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-----EEEEEecccccCccccc
Confidence 443333221100 01111245689999999999 799999999999999998652 11111
Q ss_pred ec---C----CCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceEEEEEeeec---------CCCcccceEEEE-EC
Q 020019 244 VA---G----GPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWETAAVVAKFS---------GPVHRLATAATV-KD 304 (332)
Q Consensus 244 ~~---g----~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~~~~~~~~~---------~~~~~~pt~va~-~~ 304 (332)
.. | ..+..|.|++++++|++||++. +.++++...++ ...++..... ...+..|.++++ .+
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-eEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 00 0 1245799999999999999984 34444444444 3333332110 124678999999 78
Q ss_pred CeEEEEEecCcc
Q 020019 305 GRVYLNHMLGFG 316 (332)
Q Consensus 305 g~lyv~~~~g~~ 316 (332)
|+|||++.....
T Consensus 870 G~lyVaDt~Nn~ 881 (1057)
T PLN02919 870 GRLFVADTNNSL 881 (1057)
T ss_pred CCEEEEECCCCE
Confidence 899997655444
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.80 E-value=2.8e-17 Score=142.50 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=173.1
Q ss_pred CceeEEE-ecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEE
Q 020019 34 ATHVYHY-HSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLL 112 (332)
Q Consensus 34 ~~~~i~~-~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~ 112 (332)
....-.| ...|..|..++.++||.+||+....+.|-++|+.+++. + ++. - -.|.+|.||.++++ |..|
T Consensus 50 ~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-----~--~yp-L--g~Ga~Phgiv~gpd-g~~W 118 (353)
T COG4257 50 DGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-----E--TYP-L--GSGASPHGIVVGPD-GSAW 118 (353)
T ss_pred CCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCce-----E--EEe-c--CCCCCCceEEECCC-CCee
Confidence 3444444 45678999999999999999998899999999999873 2 222 1 13458999999997 9999
Q ss_pred EEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCC
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFT 192 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~ 192 (332)
|++.. ..|.++|+++++++. ++++... .....|-..+|++|+||||.. .|.--|+|+......++..+
T Consensus 119 itd~~------~aI~R~dpkt~evt~-f~lp~~~-a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP--- 186 (353)
T COG4257 119 ITDTG------LAIGRLDPKTLEVTR-FPLPLEH-ADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAP--- 186 (353)
T ss_pred EecCc------ceeEEecCcccceEE-eeccccc-CCCcccceeeCCCccEEEeec-cccceecCcccCceeeeccC---
Confidence 99863 368899999988764 5663211 246788899999999999976 44445888875544444333
Q ss_pred CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceE
Q 020019 193 PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSAR 272 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~ 272 (332)
...+|+|||..|||.+|++....+.|.|||+.++ ..+.+..+........++-.|+.|++|+++.+...
T Consensus 187 ------qG~gpyGi~atpdGsvwyaslagnaiaridp~~~-----~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~ 255 (353)
T COG4257 187 ------QGGGPYGICATPDGSVWYASLAGNAIARIDPFAG-----HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS 255 (353)
T ss_pred ------CCCCCcceEECCCCcEEEEeccccceEEcccccC-----CcceecCCCcccccccccccCccCcEEEeccCCce
Confidence 4568999999999999999999999999999987 33444444211345667888999999999854433
Q ss_pred E-EEcCCCceEEEEEe-eecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 273 L-VESSDGWETAAVVA-KFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 273 ~-v~~~dg~~~~~~~~-~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
+ .+.+.. ...++ .+++ .-..|.++.+ ..|++|.+....
T Consensus 256 l~rfdPs~---~sW~eypLPg-s~arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 256 LHRFDPSV---TSWIEYPLPG-SKARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred eeEeCccc---ccceeeeCCC-CCCCcceeeeccCCcEEeecccc
Confidence 2 334433 12333 2222 2345778888 679999854433
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=5.6e-16 Score=162.90 Aligned_cols=217 Identities=16% Similarity=0.236 Sum_probs=146.5
Q ss_pred cccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecc--cC--c---------CCCccceEEEeCCCCeE
Q 020019 46 FRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD--LE--L---------TGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 46 ~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~--~~--~---------~~~~~~gi~vd~~~g~l 111 (332)
.|.|++++++++ +|+++..+++|.+++..++.. . ++... .+ . ..+.|.+++++++++++
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-----~--tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-----R--TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV 697 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-----E--EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE
Confidence 699999999887 566667788999999876541 1 22210 00 0 01368999999966999
Q ss_pred EEEEeCcCCCccceEEEEECCCCcEEEEEe------cCC-CC--CCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-C
Q 020019 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQ------LSG-PS--DGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-G 180 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~------l~~-~~--~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g 180 (332)
||++.+ ...|++||..++....... ..+ .. .....|++|+++++|+ |||+|+.+++|.++|++ +
T Consensus 698 yVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 698 YIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred EEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 999864 4578999998776533211 000 00 0125799999999986 99999999999999986 3
Q ss_pred ceEEEec-CCC-------CC---CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---
Q 020019 181 EFLSIIS-SPL-------FT---PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG--- 246 (332)
Q Consensus 181 ~~~~~~~-~~~-------~~---~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g--- 246 (332)
+...+.. .+. +. .+.....+..|.||+++++|.|||+++.+++|.+|+++++ .+..+...|
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-----~v~tiaG~G~~G 847 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-----RVTTLAGTGKAG 847 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-----eEEEEeccCCcC
Confidence 3322211 110 00 0001123457899999999999999999999999999876 333332111
Q ss_pred --------CCCCCCCeEEEeCCCeEEEEe--CCceEEEEcCCC
Q 020019 247 --------GPLSFGDGLELLSPTKLVVAG--NPSARLVESSDG 279 (332)
Q Consensus 247 --------~~~~~pdGi~~~~dG~l~va~--~~~~~~v~~~dg 279 (332)
..+..|.||+++++|+|||++ |+.++++....+
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 234579999999999999997 344555555555
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.72 E-value=6.4e-16 Score=137.95 Aligned_cols=189 Identities=19% Similarity=0.237 Sum_probs=132.5
Q ss_pred ccceEEc-CCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEeccc-Cc-CCCccceEEEeCCCCeEEEEEeCcCC-Cc
Q 020019 47 RECAKWD-DSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-EL-TGNGSLGLVLDHPRNRLLVVAADVFG-NK 122 (332)
Q Consensus 47 pegia~d-~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~gi~vd~~~g~l~v~~~~~~~-~~ 122 (332)
|.|++++ ++|++|++.. +.+.++|+.+++. + .+...+ +. ....|+.+++|++ |++|+++..... ..
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~-----~--~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~ 111 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKV-----T--VLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASG 111 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEE-----E--EEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTC
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcE-----E--EEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCcccc
Confidence 8999999 7777777663 4556668877652 2 233222 11 2247999999996 999999876432 12
Q ss_pred c--ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--Cc-eE---EEecCCCCCC
Q 020019 123 Y--SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GE-FL---SIISSPLFTP 193 (332)
Q Consensus 123 ~--~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~-~~---~~~~~~~~~~ 193 (332)
. ++++++++. ++...... +...||+|+++++|+ +|++|+..++|++++.+ +. .. .+...+.
T Consensus 112 ~~~g~v~~~~~~-~~~~~~~~------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--- 181 (246)
T PF08450_consen 112 IDPGSVYRIDPD-GKVTVVAD------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--- 181 (246)
T ss_dssp GGSEEEEEEETT-SEEEEEEE------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS---
T ss_pred ccccceEEECCC-CeEEEEec------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC---
Confidence 2 789999998 66544332 247899999999986 89999999999999975 33 21 1221111
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe-CC-CeEEEEeC
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL-SP-TKLVVAGN 268 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~-~d-G~l~va~~ 268 (332)
....|+|++++.+|+|||+...+++|++++++ + +.+..+.++ ...|..+++. ++ ++|||+..
T Consensus 182 -----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G----~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 182 -----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G----KLLREIELP---VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S----CEEEEEE-S---SSSEEEEEEESTTSSEEEEEEB
T ss_pred -----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c----cEEEEEcCC---CCCEEEEEEECCCCCEEEEEeC
Confidence 11348999999999999999999999999999 5 267777765 2478999995 45 78999863
No 7
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.71 E-value=3.8e-15 Score=135.77 Aligned_cols=201 Identities=19% Similarity=0.196 Sum_probs=132.0
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCcccee-----eeEEecccCc-----CCCccceEEEeCCCCeEEE
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLE-----EVTLVKDLEL-----TGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~gi~vd~~~g~l~v 113 (332)
...||.+.+|+.+.=-++...+|+|.++......+.. ... ....+.+++. .+..|.||+++...|.|||
T Consensus 53 ~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~-~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V 131 (376)
T KOG1520|consen 53 LTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVK-FADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV 131 (376)
T ss_pred cCChhhheecccCCCceEEEECCceEEEeccCceEEE-EEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence 3477888888877655555556666666543222100 000 0011111100 1246999999998679999
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------------CCeEEEE
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------------GSKIWKV 176 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------------~~~I~~v 176 (332)
||.. -.|++.+++.++.+.... +..+....+.|++.++++|.+|+||+. +|+++++
T Consensus 132 aDAY------lGL~~V~p~g~~a~~l~~-~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~Y 204 (376)
T KOG1520|consen 132 ADAY------LGLLKVGPEGGLAELLAD-EAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRY 204 (376)
T ss_pred Eecc------eeeEEECCCCCcceeccc-cccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEe
Confidence 9974 358888988765332211 101222368999999999999999974 4677777
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC-CCCCe
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL-SFGDG 254 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~-~~pdG 254 (332)
|+..|...++- .++..||||++++|+ .+.++++...+|.|+.+...+.....+ + . +.+ +.||.
T Consensus 205 D~~tK~~~VLl----------d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~Ev--F-a--~~LPG~PDN 269 (376)
T KOG1520|consen 205 DPSTKVTKVLL----------DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEV--F-A--EGLPGYPDN 269 (376)
T ss_pred cCcccchhhhh----------hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhh--H-h--hcCCCCCcc
Confidence 77666543332 245679999999999 999999999999999998654311111 1 1 123 58999
Q ss_pred EEEeCCCeEEEEe
Q 020019 255 LELLSPTKLVVAG 267 (332)
Q Consensus 255 i~~~~dG~l~va~ 267 (332)
|..+++|.+||+-
T Consensus 270 IR~~~~G~fWVal 282 (376)
T KOG1520|consen 270 IRRDSTGHFWVAL 282 (376)
T ss_pred eeECCCCCEEEEE
Confidence 9999999999995
No 8
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.65 E-value=1.8e-14 Score=131.05 Aligned_cols=213 Identities=19% Similarity=0.222 Sum_probs=134.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCC-------CccceEEEEECCCCcEEEEEecCCCC-CCCCCccceEECCC------CcE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFG-------NKYSAVAAYDLSTWNRLFLTQLSGPS-DGKSCADDVTVDAE------GNA 163 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~-------~~~~~l~~~d~~~g~~~~~~~l~~~~-~~~~~~ndiavd~d------G~l 163 (332)
+++++.+|+. |+|||.|.+... ....+|..||++++++...+.++... .+.++.|++++|.. +-+
T Consensus 2 sV~~v~iD~~-~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDEC-GRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-TT-SEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcCC-CCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 5789999996 999999976321 12368999999999999989886432 23589999999983 358
Q ss_pred EEEeCCCCeEEEEcCC-CceEEEecCCCCCCcc---------cccCccccCeEEEcc---Cc-eEEEEeCCCCeEEEEeC
Q 020019 164 YVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKE---------WYKNLVGLNGIVYHP---DG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 164 yvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~---------~~~~~~~~nGi~~~~---dG-~Lyva~~~~~~i~~id~ 229 (332)
|+||...+.|.++|.. |+.-++..+.....|. ......+..||++++ || +||+.-..+.++|+|+.
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T 160 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT 160 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Confidence 9999999999999976 6666665542222332 111223578888876 77 99999999999999986
Q ss_pred C---CCCCc-cc----eeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC-ceEEEEcCCC----ceEEEEEeeecCCC-cc
Q 020019 230 V---DGVGE-GE----EIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP-SARLVESSDG----WETAAVVAKFSGPV-HR 295 (332)
Q Consensus 230 ~---~~~~~-~~----~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~-~~~~v~~~dg----~~~~~~~~~~~~~~-~~ 295 (332)
+ ..... .. .++.+- ...+..+|+++|++|+||++.-. .......+++ .....+.. .++ +.
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG---~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~---d~~~l~ 234 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLG---DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ---DPRTLQ 234 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEE---E---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE----CC-GS
T ss_pred HHhhCccccccccccccceecc---ccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE---cCceee
Confidence 5 22211 11 122221 11246799999999999999743 2233334444 12222332 355 89
Q ss_pred cceEEEE-E--CCeEEE-EEecCccc
Q 020019 296 LATAATV-K--DGRVYL-NHMLGFGY 317 (332)
Q Consensus 296 ~pt~va~-~--~g~lyv-~~~~g~~~ 317 (332)
||.++.+ . +|.||| ++++..-.
T Consensus 235 ~pd~~~i~~~~~g~L~v~snrl~~~~ 260 (287)
T PF03022_consen 235 WPDGLKIDPEGDGYLWVLSNRLQRFA 260 (287)
T ss_dssp SEEEEEE-T--TS-EEEEE-S--SST
T ss_pred ccceeeeccccCceEEEEECcchHhh
Confidence 9999999 5 599998 77766543
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=1.8e-12 Score=121.55 Aligned_cols=238 Identities=18% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCccccceEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCccceeeeEEecc----cC---cCCCccceEEEeCCCCeEEE
Q 020019 43 SSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPD-DYPPGTVLEEVTLVKD----LE---LTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~----~~---~~~~~~~gi~vd~~~g~l~v 113 (332)
.+..|-.++++++++.+++. ...|.|..++.+. +.. .+....... |. ..+.+|..+.++|+...+|+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l----~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL----GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE----EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc----ceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 56688889999999977766 6788887776654 331 121111111 11 01237889999998667999
Q ss_pred EEeCcCCCccceEEEEECCCCc--EEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC---CceEEEec
Q 020019 114 VAADVFGNKYSAVAAYDLSTWN--RLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK---GEFLSIIS 187 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~--~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~---g~~~~~~~ 187 (332)
++.+ ..+|++|+.+... +.....+.-+ ....|..++++|+|+ +|+.+...+.|..++.+ |+....-.
T Consensus 161 ~dlG-----~D~v~~~~~~~~~~~l~~~~~~~~~--~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 161 PDLG-----ADRVYVYDIDDDTGKLTPVDSIKVP--PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EETT-----TTEEEEEEE-TTS-TEEEEEEEECS--TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EecC-----CCEEEEEEEeCCCceEEEeeccccc--cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 8864 4578888776543 5443333212 257899999999985 89999999987776643 44332211
Q ss_pred CCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeC--CCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-E
Q 020019 188 SPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDI--VDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-L 263 (332)
Q Consensus 188 ~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~--~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l 263 (332)
.+.. |........+.+|+++||| .|||++...+.|..|++ +++++ +.+..+...| ..|.+|+++++|+ |
T Consensus 234 ~~~~--~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l--~~~~~~~~~G---~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 234 ISTL--PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL--TLVQTVPTGG---KFPRHFAFSPDGRYL 306 (345)
T ss_dssp EESC--ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE--EEEEEEEESS---SSEEEEEE-TTSSEE
T ss_pred eeec--cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce--EEEEEEeCCC---CCccEEEEeCCCCEE
Confidence 1111 1001122368899999999 99999999999877666 44532 2344444432 5699999999977 7
Q ss_pred EEEeCCceEE-E---EcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 264 VVAGNPSARL-V---ESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 264 ~va~~~~~~~-v---~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
||++..+..+ + ...+| ........+. ...|+|+.|
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG-~l~~~~~~~~---~~~p~ci~f 345 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTG-KLTPVGSSVP---IPSPVCIVF 345 (345)
T ss_dssp EEEETTTTEEEEEEEETTTT-EEEEEEEEEE---SSSEEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCC-cEEEeccccc---CCCCEEEeC
Confidence 7777543222 2 23556 4433333333 456888875
No 10
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.60 E-value=3.7e-13 Score=114.60 Aligned_cols=250 Identities=14% Similarity=0.171 Sum_probs=150.3
Q ss_pred cceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC-CCeEEEEEeCcCCCccce
Q 020019 48 ECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP-RNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~-~g~l~v~~~~~~~~~~~~ 125 (332)
||+.|+.+ +.+|++++..+.|.|+|..+.+ + .+ .-++.|-. .|..+--. .-..|++.-+ ..-.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~----v-~r-a~ie~p~~-----ag~ilpv~~~~q~~~v~~G----~kf~ 82 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNK----V-YR-AKIEGPPS-----AGFILPVEGGPQEFAVGCG----SKFV 82 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhh----e-EE-EEEecCcc-----eeEEEEecCCCceEEEeec----ceEE
Confidence 89999887 5688899999999999977654 1 11 23332211 12222111 1123444322 1223
Q ss_pred EEEEECCCCcEEEEEe---cCCCCCCCCCccceEECCCCcEEEEeC---------CCCeEEEEcCCCceEEEecCCCCCC
Q 020019 126 VAAYDLSTWNRLFLTQ---LSGPSDGKSCADDVTVDAEGNAYVTDV---------TGSKIWKVGVKGEFLSIISSPLFTP 193 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~---l~~~~~~~~~~ndiavd~dG~lyvtd~---------~~~~I~~v~~~g~~~~~~~~~~~~~ 193 (332)
+..||........... +. |.....+.||--+||+|+.|..-. ..+.+|+.-++++...+++
T Consensus 83 i~nwd~~~~~a~v~~t~~ev~-~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~------ 155 (310)
T KOG4499|consen 83 IVNWDGVSESAKVYRTLFEVQ-PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN------ 155 (310)
T ss_pred EEEcccccceeeeeeeccccC-chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeeh------
Confidence 5556643322221122 21 222358999999999999987432 2456666666666544432
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCCCCeE--EEEeCCCCCCccceeEEEEecC-CC--CCCCCeEEEeCCCeEEEEe
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIRVAG-GP--LSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~~~g-~~--~~~pdGi~~~~dG~l~va~ 267 (332)
....+|||+|+.|- ..|+.|+.+..| |.+|..+|.... +...+.+.. ++ -..||||++|.+|+||||.
T Consensus 156 -----~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 156 -----CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-RKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred -----hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccC-cceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 23468999999998 999999999999 555566764321 223333321 22 3479999999999999998
Q ss_pred CCceEE-EEcCCCceEEEEEeeecCCCcccceEEEEEC---CeEEE-EEecCcccc-CCccceeeeee
Q 020019 268 NPSARL-VESSDGWETAAVVAKFSGPVHRLATAATVKD---GRVYL-NHMLGFGYP-KKKHALVEAVF 329 (332)
Q Consensus 268 ~~~~~~-v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~---g~lyv-~~~~g~~~~-~~~~~~~~~~~ 329 (332)
.+..++ ...+ .+++++..+..| -...|+++|.+ +-||| ++.-.++.. .-++|.+|..|
T Consensus 230 ~ng~~V~~~dp---~tGK~L~eiklP-t~qitsccFgGkn~d~~yvT~aa~~~dp~~~~~~p~aG~iy 293 (310)
T KOG4499|consen 230 FNGGTVQKVDP---TTGKILLEIKLP-TPQITSCCFGGKNLDILYVTTAAKFDDPVRTNTDPNAGTIY 293 (310)
T ss_pred ecCcEEEEECC---CCCcEEEEEEcC-CCceEEEEecCCCccEEEEEehhcccCchhcccCCCCccEE
Confidence 554343 2332 233566555545 34568899933 68888 444444433 77778777766
No 11
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.60 E-value=6.8e-13 Score=115.48 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=155.3
Q ss_pred cCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc-CCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 42 SSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-TGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
+.|..|++|.+++||..|+++... .|.|+++++.+. + +|. -|.. ...+.+...+|+. |+||++...
T Consensus 101 g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-----t--~f~-lp~~~a~~nlet~vfD~~-G~lWFt~q~--- 167 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-----T--RFP-LPLEHADANLETAVFDPW-GNLWFTGQI--- 167 (353)
T ss_pred CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-----E--Eee-cccccCCCcccceeeCCC-ccEEEeecc---
Confidence 356799999999999999988433 899999987662 1 232 2221 1125667889996 999999752
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
+.-.++|+.++.+. .++. | ....|+||++.|||.+|++....+.|.++|+.......+ ..|. ...
T Consensus 168 ---G~yGrLdPa~~~i~-vfpa--P--qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~-----p~P~--~~~ 232 (353)
T COG4257 168 ---GAYGRLDPARNVIS-VFPA--P--QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVV-----PQPN--ALK 232 (353)
T ss_pred ---ccceecCcccCcee-eecc--C--CCCCCcceEECCCCcEEEEeccccceEEcccccCCccee-----cCCC--ccc
Confidence 22336787665443 3333 2 247899999999999999999999999999863322222 2221 113
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEE-EcCCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLV-ESSDG 279 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v-~~~dg 279 (332)
.+...|-.|+-|++|++++.+++++||++... .=.+.++++ ....|+.|.+|.-|++|..+...+-+. +.+
T Consensus 233 ~gsRriwsdpig~~wittwg~g~l~rfdPs~~-----sW~eypLPg-s~arpys~rVD~~grVW~sea~agai~rfdp-- 304 (353)
T COG4257 233 AGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT-----SWIEYPLPG-SKARPYSMRVDRHGRVWLSEADAGAIGRFDP-- 304 (353)
T ss_pred ccccccccCccCcEEEeccCCceeeEeCcccc-----cceeeeCCC-CCCCcceeeeccCCcEEeeccccCceeecCc--
Confidence 46778999999999999999999999999865 344456664 446899999999999999985443332 233
Q ss_pred ceEEEEEeeecCCCcccceEEEE--ECCeEEEEE
Q 020019 280 WETAAVVAKFSGPVHRLATAATV--KDGRVYLNH 311 (332)
Q Consensus 280 ~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~ 311 (332)
++++... +..+. .-+-++.+ ..|++|.+.
T Consensus 305 -eta~ftv-~p~pr-~n~gn~ql~gr~ge~W~~e 335 (353)
T COG4257 305 -ETARFTV-LPIPR-PNSGNIQLDGRPGELWFTE 335 (353)
T ss_pred -ccceEEE-ecCCC-CCCCceeccCCCCceeecc
Confidence 2222222 22221 11224555 567888743
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=6.1e-13 Score=124.70 Aligned_cols=251 Identities=16% Similarity=0.215 Sum_probs=156.6
Q ss_pred CCccccceEEcCCCCEEEEE-e---cCCeE--EEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 43 SSFFRECAKWDDSGRRFIVS-F---LDGGI--GQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~---~~g~I--~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
.+..|.-++++++++++|+. - ..+.| ++++.++++. +.+......+..|-.++++++...||+++-
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L--------~~~~~~~~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL--------TLLNSVPSGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE--------EEEEEEEESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee--------EEeeeeccCCCCcEEEEEecCCCEEEEEEc
Confidence 44578889999999987776 2 35676 4555543442 222221113457889999998667888775
Q ss_pred CcCCCccceEEEEECCC-CcEEEE---EecC--CCC---CCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC---ceE
Q 020019 117 DVFGNKYSAVAAYDLST-WNRLFL---TQLS--GPS---DGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG---EFL 183 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~-g~~~~~---~~l~--~~~---~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g---~~~ 183 (332)
. .+.+.+|+++. |+.... .... +|. +....|+.+.++|+|+ +|++|.+..+|+.++.+. ++.
T Consensus 107 ~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 107 G-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp T-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred c-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 3 35677888765 554433 2221 111 2347899999999986 999999999998887653 232
Q ss_pred EEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC--CCCCccceeEEEEecCCC---CCCCCeEEE
Q 020019 184 SIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV--DGVGEGEEIKLIRVAGGP---LSFGDGLEL 257 (332)
Q Consensus 184 ~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~--~~~~~~~~~~~v~~~g~~---~~~pdGi~~ 257 (332)
... . .. .+...+|..++|+||| .+||.+..+++|..++.. +++. +.++.+..-... ...|.+|++
T Consensus 182 ~~~-~--~~----~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 182 PVD-S--IK----VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL--TEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp EEE-E--EE----CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESCETTSCSSSSEEEEEE
T ss_pred Eee-c--cc----cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce--eEEEEeeeccccccccCCceeEEE
Confidence 211 0 01 1134688999999999 999999999999887777 4421 123333321011 136889999
Q ss_pred eCCCe-EEEEeCCc--eEEEEc--CCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecCcccc
Q 020019 258 LSPTK-LVVAGNPS--ARLVES--SDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 258 ~~dG~-l~va~~~~--~~~v~~--~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g~~~~ 318 (332)
++||+ |||++... +.+... .+| +. +.+..+.. ...+|..+++ .++.|||++..+..+.
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d~~~g-~l-~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLDPATG-TL-TLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEECTTTT-TE-EEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ecCCCEEEEEeccCCEEEEEEEecCCC-ce-EEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 99986 88887443 232232 345 33 33344432 2467999999 6788999887776655
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=7.8e-12 Score=116.36 Aligned_cols=247 Identities=11% Similarity=0.132 Sum_probs=147.5
Q ss_pred ccccceEEcCCCCEEEEE-ecCCeEEEEECC-CCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 45 FFRECAKWDDSGRRFIVS-FLDGGIGQVAVP-DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~-~~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
-.|..++++++++.+|+. ...+.|..++.+ +++. +...... .+..|.+|++++++..+|++...
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--------~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~----- 100 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--------TFAAESP-LPGSPTHISTDHQGRFLFSASYN----- 100 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce--------EEeeeec-CCCCceEEEECCCCCEEEEEEcC-----
Confidence 368889999999976655 556777655543 3331 1111111 11368899999985568887643
Q ss_pred cceEEEEECCC-CcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC--CceEEEecCCCCCCccccc
Q 020019 123 YSAVAAYDLST-WNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 123 ~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.+.+|+.++ +........ ..+...|+.++++|+|+ +|+++...+.|..++.+ |+....... .... +
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~-~~~~----~ 172 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA-EVTT----V 172 (330)
T ss_pred CCeEEEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC-ceec----C
Confidence 35688888863 322111211 01235688899999985 88999999988888764 332110000 0000 1
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEEecCCCC---CCCCeEEEeCCCe-EEEEeCC-c
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIRVAGGPL---SFGDGLELLSPTK-LVVAGNP-S 270 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~~~g~~~---~~pdGi~~~~dG~-l~va~~~-~ 270 (332)
...+|.+++++||| .||+++..+++|..++.+. ++. +.++.+..-.... ..+.+|+++|+|+ ||+++.. .
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI--ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE--EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 23568899999999 9999999899997777663 321 1222222110111 1344788999976 7887532 2
Q ss_pred -eEEEE-cCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecCcccc
Q 020019 271 -ARLVE-SSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 271 -~~~v~-~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g~~~~ 318 (332)
+.++. ..++ ...++...+.. ...|..+++ ++.+||++++....+.
T Consensus 251 ~I~v~~i~~~~-~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 251 LISVFSVSEDG-SVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred eEEEEEEeCCC-CeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEE
Confidence 22222 2333 23345554432 246888888 5679999887665544
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.54 E-value=8.1e-12 Score=116.24 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=137.6
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.+++++++|+.+|+. ..++.|..++.+.... +.+ .....++. .+|.+++++++...+|+++.+ .+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~---~~~--~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~-----~~ 148 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI---PVA--PIQIIEGL--EGCHSANIDPDNRTLWVPCLK-----ED 148 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC---CCC--ceeeccCC--CcccEeEeCCCCCEEEEeeCC-----CC
Confidence 67899999999977766 5578888887653221 011 11111121 268899999975678888753 46
Q ss_pred eEEEEECCC-CcEEE----EEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC---CceEEEecCCCCCCcc
Q 020019 125 AVAAYDLST-WNRLF----LTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK---GEFLSIISSPLFTPKE 195 (332)
Q Consensus 125 ~l~~~d~~~-g~~~~----~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~---g~~~~~~~~~~~~~p~ 195 (332)
.|.+||.++ +.+.. ...+ + ....|++++++|+|+ +|+++...+.|..++.+ |+......-..+ |.
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~--~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~--p~ 222 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTT--V--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM--PA 222 (330)
T ss_pred EEEEEEECCCCcccccCCCceec--C--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC--CC
Confidence 789999876 33321 1122 1 136789999999986 89999888888766643 343222111111 11
Q ss_pred cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc--e
Q 020019 196 WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS--A 271 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~--~ 271 (332)
.......+.+|+++||| +||+++...+.|..|+.+.....-..+..+.. ...|.++++++||+ ||+++... .
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~----~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT----ETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec----cccCCceEECCCCCEEEEEEccCCcE
Confidence 00112245679999999 99999988888877766432100011222222 14789999999975 77776422 2
Q ss_pred EEEE--cCCCceEEEEEeeecCCCcccceEEEE
Q 020019 272 RLVE--SSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 272 ~~v~--~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
.+.. ..+| .. +....+.. ..+|.++++
T Consensus 299 ~v~~~~~~~g-~l-~~~~~~~~--g~~P~~~~~ 327 (330)
T PRK11028 299 SVYEIDGETG-LL-TELGRYAV--GQGPMWVSV 327 (330)
T ss_pred EEEEEcCCCC-cE-EEcccccc--CCCceEEEE
Confidence 2222 2334 22 33344432 457888886
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.52 E-value=2.2e-11 Score=115.14 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=147.4
Q ss_pred cccceEEcCCCCEEEEEe-----------cCC-eEEEEECCC--CCCCccceeeeEEecccCcCCCccceEEEeCCCCeE
Q 020019 46 FRECAKWDDSGRRFIVSF-----------LDG-GIGQVAVPD--DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~-----------~~g-~I~~vd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l 111 (332)
.|.++++|++|++|++.. ..+ +|++++..+ ++. +..++.. .++ ..|.||++.++ | |
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-----d~~~vfa-~~l--~~p~Gi~~~~~-G-l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-----DKSNVFA-EEL--SMVTGLAVAVG-G-V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-----ceeEEee-cCC--CCccceeEecC-C-E
Confidence 899999999999999873 123 899997643 332 2122332 122 26899999985 7 9
Q ss_pred EEEEeCcCCCccceEEEE-ECCC-----CcEEEEEe-cCCC-CCCCCCccceEECCCCcEEEEeCC--------------
Q 020019 112 LVVAADVFGNKYSAVAAY-DLST-----WNRLFLTQ-LSGP-SDGKSCADDVTVDAEGNAYVTDVT-------------- 169 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~-d~~~-----g~~~~~~~-l~~~-~~~~~~~ndiavd~dG~lyvtd~~-------------- 169 (332)
||++. ..|++| |.+. ++.+..+. +... ......++++++++||+||+++..
T Consensus 85 yV~~~-------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 85 YVATP-------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred EEeCC-------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccC
Confidence 99864 357777 3321 13222222 3211 001467999999999999997762
Q ss_pred -----CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCC-C-C-----Cccc
Q 020019 170 -----GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD-G-V-----GEGE 237 (332)
Q Consensus 170 -----~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~-~-~-----~~~~ 237 (332)
.+.|+|++++|.....+.. ++.+|+|++++++|.||+++...+...++.... + . ..+.
T Consensus 158 ~~~~~~g~i~r~~pdg~~~e~~a~----------G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~ 227 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKLRVVAH----------GFQNPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGR 227 (367)
T ss_pred cccccCceEEEEecCCCeEEEEec----------CcCCCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCc
Confidence 2679999999765444322 345789999999999999998776666665321 0 0 0000
Q ss_pred ee--------EEE------------EecC---CCCCCCCeEEEeC--------CCeEEEEeCCceEE---EEcCCCceEE
Q 020019 238 EI--------KLI------------RVAG---GPLSFGDGLELLS--------PTKLVVAGNPSARL---VESSDGWETA 283 (332)
Q Consensus 238 ~~--------~~v------------~~~g---~~~~~pdGi~~~~--------dG~l~va~~~~~~~---v~~~dg~~~~ 283 (332)
.. ..+ ..+. .....|.|+++-. +|++++++....++ ...++|....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~ 307 (367)
T TIGR02604 228 RYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFK 307 (367)
T ss_pred ccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccE
Confidence 00 000 0000 0123688998862 37899998544222 2234451111
Q ss_pred EE-EeeecC-CCcccceEEEE-ECCeEEEEEecCcccc
Q 020019 284 AV-VAKFSG-PVHRLATAATV-KDGRVYLNHMLGFGYP 318 (332)
Q Consensus 284 ~~-~~~~~~-~~~~~pt~va~-~~g~lyv~~~~g~~~~ 318 (332)
.. ...+.. .....|..+.+ .+|.|||+.+....+.
T Consensus 308 ~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~ 345 (367)
T TIGR02604 308 GERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGIE 345 (367)
T ss_pred eecCceEecCCCcccccceeECCCCCEEEEEeccCccc
Confidence 11 111221 12246888888 8999999998776655
No 16
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=6.6e-11 Score=112.32 Aligned_cols=194 Identities=21% Similarity=0.251 Sum_probs=140.4
Q ss_pred ccccceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.+|.++++.++++ .|+.....+.|.+++..+.+. .+ .. ..+..|.+++++++.+.+||++... ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~----~~---~~----~vG~~P~~~~~~~~~~~vYV~n~~~---~~ 139 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV----LG---SI----PVGLGPVGLAVDPDGKYVYVANAGN---GN 139 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce----ee---Ee----eeccCCceEEECCCCCEEEEEeccc---CC
Confidence 6899999999998 555556679999999544331 11 22 1233799999999877999998742 13
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+.+.++|.+++++...... ...|.+++++|+|+ +|+++...+.|..++..+..... ...... .....+
T Consensus 140 ~~vsvid~~t~~~~~~~~v------G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~----~~~~~~ 208 (381)
T COG3391 140 NTVSVIDAATNKVTATIPV------GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL----VGVGTG 208 (381)
T ss_pred ceEEEEeCCCCeEEEEEec------CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc----cccCCC
Confidence 5788999999888765332 12568999999997 99999999999999987664432 221111 123467
Q ss_pred cCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNP 269 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~ 269 (332)
|.+++++++| ++|+++..+ +++.+++..++ .+.........+ .|.+++++|+|+ +|+++..
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-----~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-----NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCc-----eEEEeccccccC-CCCceeECCCCCEEEEEecC
Confidence 8999999999 899999988 69999999977 333322221244 789999999976 6666554
No 17
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=4.6e-11 Score=109.34 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=130.3
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeC-
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAAD- 117 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~- 117 (332)
+..++..+.+..++++|+++.+.. .+++++.+++.. .. .+.. .++...+.+|...++++ |++|+.++.
T Consensus 62 ~~~p~~~~~~~~~d~~g~Lv~~~~---g~~~~~~~~~~~----~t--~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~ 131 (307)
T COG3386 62 FPSPGGFSSGALIDAGGRLIACEH---GVRLLDPDTGGK----IT--LLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGY 131 (307)
T ss_pred EECCCCcccceeecCCCeEEEEcc---ccEEEeccCCce----eE--EeccccCCCCcCCCCceeEcCC-CCEEEeCCCc
Confidence 344455677788888876554332 244444444432 01 1221 12333357899999997 999999987
Q ss_pred --cCC---CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC---CceE---EE
Q 020019 118 --VFG---NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK---GEFL---SI 185 (332)
Q Consensus 118 --~~~---~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~---g~~~---~~ 185 (332)
... ...+.|+++|+. ++.+.... +....||+|+++||| .+|++|+..++|++++-+ +... .+
T Consensus 132 ~~~~~~~~~~~G~lyr~~p~-g~~~~l~~-----~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~ 205 (307)
T COG3386 132 FDLGKSEERPTGSLYRVDPD-GGVVRLLD-----DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF 205 (307)
T ss_pred cccCccccCCcceEEEEcCC-CCEEEeec-----CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence 221 345679999984 44443221 125789999999999 699999999999999765 2211 01
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEE-EEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-C-Ce
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLI-VIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-P-TK 262 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Ly-va~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-d-G~ 262 (332)
... .. ....|+|+++|.+|.|| .+..+.++|.+++++ ++ .+..+.++- ..|..+++.. + ..
T Consensus 206 ~~~-~~-------~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~----l~~~i~lP~---~~~t~~~FgG~~~~~ 269 (307)
T COG3386 206 VDF-DE-------EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK----LLGEIKLPV---KRPTNPAFGGPDLNT 269 (307)
T ss_pred EEc-cC-------CCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc----EEEEEECCC---CCCccceEeCCCcCE
Confidence 100 00 12568999999999999 444455599999999 52 677777762 5678888864 3 77
Q ss_pred EEEEeCC
Q 020019 263 LVVAGNP 269 (332)
Q Consensus 263 l~va~~~ 269 (332)
|||+...
T Consensus 270 L~iTs~~ 276 (307)
T COG3386 270 LYITSAR 276 (307)
T ss_pred EEEEecC
Confidence 9999743
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.6e-10 Score=102.84 Aligned_cols=240 Identities=16% Similarity=0.165 Sum_probs=146.0
Q ss_pred CccccceEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCccceeeeEEecccCc-CC-----CccceEEEeCCCCeEEEEE
Q 020019 44 SFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLEL-TG-----NGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~-~~-----~~~~gi~vd~~~g~l~v~~ 115 (332)
+..|--+++|++|+.+|+. ...|.|.+.-... +... .+. ....+++. +. -++.-..++|+...|++++
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-~~v---~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-PVV---QVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccc-cce---eeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 4455779999999987776 5567665554432 3210 111 22222221 11 1356677899845778887
Q ss_pred eCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEE--EcCC-CceEEEecCCCC
Q 020019 116 ADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWK--VGVK-GEFLSIISSPLF 191 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~--v~~~-g~~~~~~~~~~~ 191 (332)
-+ ..++..|+++.|++....+.. ..+...|..|++.|+|. +|+....++.|.. +++. |++..+-....+
T Consensus 164 LG-----~Dri~~y~~~dg~L~~~~~~~--v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 164 LG-----TDRIFLYDLDDGKLTPADPAE--VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred cC-----CceEEEEEcccCccccccccc--cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 63 568899999888776543321 12357899999999997 7999999887665 5553 554433111111
Q ss_pred CCcccccCccccCeEEEccCc-eEEEEeCCCCeE--EEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
|....+..+.-.|.+++|| .||++|...+.| ++|+..++ ....+.........|.+..+++.|++.++.+
T Consensus 237 --P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 237 --PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred --ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 2222244566789999999 999999988877 56676666 3333332112234699999999988666643
Q ss_pred C-c-eEEEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 269 P-S-ARLVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 269 ~-~-~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+ + ...++..|. +++.+...........|+|+.|
T Consensus 310 q~sd~i~vf~~d~-~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 310 QKSDNITVFERDK-ETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred cCCCcEEEEEEcC-CCceEEecccccCCCCcEEEEE
Confidence 3 2 233444444 4445544322223456888765
No 19
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=3e-10 Score=107.85 Aligned_cols=231 Identities=15% Similarity=0.181 Sum_probs=155.4
Q ss_pred CccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 44 SFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 44 ~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
+.+|.++++.++| .+|+.......+..++..... .+ .+. ..+. ..|.|++++++..++|+...+
T Consensus 30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-----~~--~~~-~~g~--~~p~~i~v~~~~~~vyv~~~~----- 94 (381)
T COG3391 30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-----VT--QSL-SVGG--VYPAGVAVNPAGNKVYVTTGD----- 94 (381)
T ss_pred CCCCceeEEcCccCEEEEEeecCceeeecccccce-----ee--eec-cCCC--ccccceeeCCCCCeEEEecCC-----
Confidence 4489999999999 566666555577777765222 11 122 1121 478999999986779999864
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeC--CCCeEEEEcCCC-ceEEEecCCCCCCccccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDV--TGSKIWKVGVKG-EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~--~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~ 198 (332)
...+.++|.++.+......+ ...|.+++++++| .+||++. .++.|.++|... +..... +..
T Consensus 95 ~~~v~vid~~~~~~~~~~~v------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--~vG------- 159 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPV------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--PVG------- 159 (381)
T ss_pred CCeEEEEcCcccceeeEeee------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--ecC-------
Confidence 45688999877666555544 2388999999997 6999999 579999999884 433321 111
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---CCCCCCCeEEEeCCCe-EEEEeCCc--e
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---GPLSFGDGLELLSPTK-LVVAGNPS--A 271 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---~~~~~pdGi~~~~dG~-l~va~~~~--~ 271 (332)
..|.|++++|+| .+|+++..+++|..|+.++. .+.+ ...+ .....|.+++++++|+ +||++... .
T Consensus 160 --~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-----~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 160 --NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-----SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred --CCcceEEECCCCCeEEEEecCCCeEEEEeCCCc-----ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 245799999999 79999999999999997754 2222 2110 1346899999999977 99997543 1
Q ss_pred E--EEEcCCCceEEEEEee-ecCCCcccceEEEE--ECCeEEEEEecCccc
Q 020019 272 R--LVESSDGWETAAVVAK-FSGPVHRLATAATV--KDGRVYLNHMLGFGY 317 (332)
Q Consensus 272 ~--~v~~~dg~~~~~~~~~-~~~~~~~~pt~va~--~~g~lyv~~~~g~~~ 317 (332)
. .+....+ .+... .....+ +|..+++ .+..+|+.+..+..+
T Consensus 232 ~v~~id~~~~----~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V 277 (381)
T COG3391 232 NVLKIDTATG----NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTV 277 (381)
T ss_pred eEEEEeCCCc----eEEEeccccccC-CCCceeECCCCCEEEEEecCCCeE
Confidence 2 2233333 33332 223345 6777777 677788865554443
No 20
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=2e-09 Score=100.06 Aligned_cols=249 Identities=14% Similarity=0.104 Sum_probs=140.0
Q ss_pred cCCccccceEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCccceeeeEEecccCc-CCCccceEEEeCCCCe
Q 020019 42 SSSFFRECAKWDDSGRRFIVS-F---------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-TGNGSLGLVLDHPRNR 110 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~-~---------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gi~vd~~~g~ 110 (332)
..|..|+++ +++||+.+|+. . .++.|..+|..+.+. ..+.....+|.+ .+..+..++++++...
T Consensus 44 ~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~----~~~i~~p~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 44 DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP----IADIELPEGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE----EeEEccCCCchhhccCccceEEECCCCCE
Confidence 457799996 99999876655 5 578899999988763 221122222332 1346779999998446
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCC
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPL 190 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~ 190 (332)
|||++.+ ..+.+.++|.++++++..++.++. ..-....++++...+--+.-..+.++.+|+.. ....+.
T Consensus 119 l~V~n~~----p~~~V~VvD~~~~kvv~ei~vp~~------~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~v 187 (352)
T TIGR02658 119 LLFYQFS----PSPAVGVVDLEGKAFVRMMDVPDC------YHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEV 187 (352)
T ss_pred EEEecCC----CCCEEEEEECCCCcEEEEEeCCCC------cEEEEecCCccEEEeecCceEEEEecCCCceE-Eeeeee
Confidence 8888753 356789999999999887776321 11122222222222211111222344455522 111111
Q ss_pred CCCcccccCccccCeEEEcc-Cc-eEEEEeCCCCeEEEEeCCCCCCcc-ceeEEEEecC-CCCCCCCe---EEEeCC-Ce
Q 020019 191 FTPKEWYKNLVGLNGIVYHP-DG-FLIVIHTFSGNLFKIDIVDGVGEG-EEIKLIRVAG-GPLSFGDG---LELLSP-TK 262 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~-dG-~Lyva~~~~~~i~~id~~~~~~~~-~~~~~v~~~g-~~~~~pdG---i~~~~d-G~ 262 (332)
|.. ...+-+..| .+.+ || ++|++.. |+|+.+|+.+..... .....+.... ++.-.|.| ++++++ ++
T Consensus 188 f~~-~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 188 FHP-EDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred ecC-CccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 110 000112233 4455 77 8888766 899999976542210 1122121110 01124666 999987 77
Q ss_pred EEEEeCC-----------ceEEEEcCCCceEEEEEeeecCCCcccceEEEE--ECC-eEEEEEecCcccc
Q 020019 263 LVVAGNP-----------SARLVESSDGWETAAVVAKFSGPVHRLATAATV--KDG-RVYLNHMLGFGYP 318 (332)
Q Consensus 263 l~va~~~-----------~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g-~lyv~~~~g~~~~ 318 (332)
+||+.++ ..+++....+ +++..+.. ...|.++++ +++ .||++++...+++
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCC----eEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 9996421 2344455444 56666553 346788999 556 7899998877666
No 21
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.30 E-value=2.7e-10 Score=107.69 Aligned_cols=162 Identities=18% Similarity=0.247 Sum_probs=106.6
Q ss_pred EecccCcCCCccceEEEeCCCCeEEEEEeCcCC------Ccc-ceEEEEECCC--CcEEEEEecCCCCCCCCCccceEEC
Q 020019 88 LVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG------NKY-SAVAAYDLST--WNRLFLTQLSGPSDGKSCADDVTVD 158 (332)
Q Consensus 88 ~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~------~~~-~~l~~~d~~~--g~~~~~~~l~~~~~~~~~~ndiavd 158 (332)
+.+.|... .|.+|++|++ |+|||++..... .+. .+|.+++..+ |+......+ .++...|+++++.
T Consensus 7 ~A~~p~~~--~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf---a~~l~~p~Gi~~~ 80 (367)
T TIGR02604 7 FAAEPLLR--NPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF---AEELSMVTGLAVA 80 (367)
T ss_pred EECCCccC--CCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---ecCCCCccceeEe
Confidence 44445553 8999999996 999999853210 112 3788886543 443332333 2335689999999
Q ss_pred CCCcEEEEeCCCCeEEEE-cCCC------ceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-----------
Q 020019 159 AEGNAYVTDVTGSKIWKV-GVKG------EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF----------- 220 (332)
Q Consensus 159 ~dG~lyvtd~~~~~I~~v-~~~g------~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~----------- 220 (332)
++| +||++ ...|+++ +.++ +...++. .+.... ....-.++++++++||+||++...
T Consensus 81 ~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~--~~~~~~-~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~ 154 (367)
T TIGR02604 81 VGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLS--GFGGQI-NNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGT 154 (367)
T ss_pred cCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEE--ccCCCC-CcccccccCceECCCCCEEEecccCCCceeccCCC
Confidence 999 99997 4578887 4433 3223322 121100 001345899999999999998772
Q ss_pred --------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 221 --------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 221 --------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+.|+|++++++ ..+.+. ..+..|.|++++++|++|+++|.
T Consensus 155 ~~~~~~~~~g~i~r~~pdg~-----~~e~~a---~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 155 SDESRQGLGGGLFRYNPDGG-----KLRVVA---HGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCcccccCceEEEEecCCC-----eEEEEe---cCcCCCccceECCCCCEEEEccC
Confidence 157999999866 344343 24678999999999999999864
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.29 E-value=3e-08 Score=89.69 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=137.4
Q ss_pred cccceEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|.+++++++|+.+| +...++.|..++..+++. .. .+. . +..+..++++++.+.+|++... .+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~--~~~-~----~~~~~~~~~~~~g~~l~~~~~~-----~~ 95 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV----IG--TLP-S----GPDPELFALHPNGKILYIANED-----DN 95 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE----EE--ecc-C----CCCccEEEECCCCCEEEEEcCC-----CC
Confidence 578899999998654 446678999999876652 11 121 1 1245678899874557776542 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-CCeEEEEcCCC-ceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-GSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+..||+++++.....+. ...+++++++|+|.++++... ...++.++.+. +...... ....
T Consensus 96 ~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-----------~~~~ 158 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-----------VDQR 158 (300)
T ss_pred eEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-----------cCCC
Confidence 689999988665443332 234678999999986655443 34566667653 3222111 0124
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec--CC--CCCCCCeEEEeCCCeE-EEEeC--CceEEE
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA--GG--PLSFGDGLELLSPTKL-VVAGN--PSARLV 274 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~--g~--~~~~pdGi~~~~dG~l-~va~~--~~~~~v 274 (332)
+..+++++|| .||++....++|+.+++.+++ .+..+... +. ....|.+++++++|+. |++.. ....++
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 5789999999 788877677899999998763 33333321 10 1124678999999874 66642 223333
Q ss_pred EcCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEEEecC
Q 020019 275 ESSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLNHMLG 314 (332)
Q Consensus 275 ~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~~~~g 314 (332)
...++ ++...+.. ...+.++++ .+..||+++...
T Consensus 235 d~~~~----~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 235 DAKTY----EVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred ECCCC----cEEEEEEe--CCCcceEEECCCCCEEEEEcCCC
Confidence 44444 23332221 234677888 455677765433
No 23
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.5e-08 Score=91.49 Aligned_cols=245 Identities=15% Similarity=0.225 Sum_probs=147.4
Q ss_pred cccceEEcCCCCEEEEE-ec--CCeE--EEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcC
Q 020019 46 FRECAKWDDSGRRFIVS-FL--DGGI--GQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVF 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~--~g~I--~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~ 119 (332)
.|.=++++++++.+|+. -. .|.| ++||+.+|.. +++.....++.+|.-+.+|++ |+ ||++.-.
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L--------t~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~-- 109 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL--------TFLNRQTLPGSPPCYVSVDED-GRFVFVANYH-- 109 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE--------EEeeccccCCCCCeEEEECCC-CCEEEEEEcc--
Confidence 56669999999766665 32 4555 6777766763 455443334557788999997 65 5555432
Q ss_pred CCccceEEEEECCC-CcEEEE---EecCCC--C--CCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCC
Q 020019 120 GNKYSAVAAYDLST-WNRLFL---TQLSGP--S--DGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 120 ~~~~~~l~~~d~~~-g~~~~~---~~l~~~--~--~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~ 189 (332)
.+.+.++..+. |.+... ....++ . +..+.++-.-++|+|+ ++++|-+..+|+.++.+ |++...-..
T Consensus 110 ---~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~- 185 (346)
T COG2706 110 ---SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA- 185 (346)
T ss_pred ---CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-
Confidence 45677887754 544332 222221 1 1234578888999996 78889999998887754 665432211
Q ss_pred CCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC--CCCccceeEEEE-ecCCCC---CCCCeEEEeCCCe
Q 020019 190 LFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD--GVGEGEEIKLIR-VAGGPL---SFGDGLELLSPTK 262 (332)
Q Consensus 190 ~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~--~~~~~~~~~~v~-~~g~~~---~~pdGi~~~~dG~ 262 (332)
.+ . ...||.-|+|+|+| ..|+.+..+++|..+..+. ++. +.++.+. ++ +.+ .....|.+++||+
T Consensus 186 ~v-~-----~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~--~~lQ~i~tlP-~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 186 EV-K-----PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF--EELQTIDTLP-EDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred cc-C-----CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE--EEeeeeccCc-cccCCCCceeEEEECCCCC
Confidence 11 2 34789999999999 9999999999986555553 422 1233332 22 222 2345677889998
Q ss_pred -EEEEeCC--ceEE-EEcCCCceEEEEEeeecCCCcccceEEEE-ECC-eEEEEEecCcc
Q 020019 263 -LVVAGNP--SARL-VESSDGWETAAVVAKFSGPVHRLATAATV-KDG-RVYLNHMLGFG 316 (332)
Q Consensus 263 -l~va~~~--~~~~-v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g-~lyv~~~~g~~ 316 (332)
||++|.. ++.. ...+++-+. ++.+..+. ...+|-...+ .++ -|++++.-+..
T Consensus 257 FLYasNRg~dsI~~f~V~~~~g~L-~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 257 FLYASNRGHDSIAVFSVDPDGGKL-ELVGITPT-EGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEEecCCCCeEEEEEEcCCCCEE-EEEEEecc-CCcCCccceeCCCCCEEEEEccCCCc
Confidence 5666532 2332 234554233 33333332 3567888888 444 44455554443
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.26 E-value=1.9e-08 Score=90.98 Aligned_cols=218 Identities=13% Similarity=0.110 Sum_probs=134.9
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+..++++++|+.+++. ..+++|..+|..+.+. . .... . +..+.+++++++ |.++++... ...
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~----~---~~~~--~--~~~~~~~~~~~d-g~~l~~~~~----~~~ 137 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKV----L---AEIP--V--GVEPEGMAVSPD-GKIVVNTSE----TTN 137 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE----E---eEee--C--CCCcceEEECCC-CCEEEEEec----CCC
Confidence 46778999999866655 5578999999875541 1 1111 1 124678999997 665555432 123
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+..||.++++....... ...++.++++++|. +|++....+.|+.++.. ++....+... .+...+....
T Consensus 138 ~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~---~~~~~~~~~~ 208 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLV------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE---IPGVHPEAVQ 208 (300)
T ss_pred eEEEEeCCCCeEEEEEEc------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---ccccccccCC
Confidence 456689887766543322 23567799999986 66776667889999876 3432222111 0100012235
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE-EEEeC--CceEEEEcCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL-VVAGN--PSARLVESSD 278 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l-~va~~--~~~~~v~~~d 278 (332)
+.++++++|| .+|++...+++|..+|..+++ .+..+... ..+.++++.++|+. |+++. +...+....+
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~~----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----VLDYLLVG----QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCc----EEEEEEeC----CCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 6789999999 889988778889999988662 33333322 35789999999875 45432 3344445555
Q ss_pred CceEEEEEeeecCCCcccceEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
+ +++..+.. ...|.++++
T Consensus 281 ~----~~~~~~~~--~~~~~~~~~ 298 (300)
T TIGR03866 281 L----KVIKSIKV--GRLPWGVVV 298 (300)
T ss_pred C----cEEEEEEc--ccccceeEe
Confidence 5 34444432 256777775
No 25
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.24 E-value=2.7e-09 Score=99.40 Aligned_cols=165 Identities=19% Similarity=0.274 Sum_probs=93.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc--C-CCccceEEEeCC---CCeEEEEEeCc-
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--T-GNGSLGLVLDHP---RNRLLVVAADV- 118 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~gi~vd~~---~g~l~v~~~~~- 118 (332)
.|-++++.|+|++|++.. .|+|++++.++... . .+...+.. . ..+..||+++|+ ++.||++....
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~-----~--~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLK-----T--PVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEETTTEEC-----E--EEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEeCCCcCc-----c--eecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 688999999999988766 89999999443221 1 12111111 1 137899999993 58999997631
Q ss_pred --CCCccceEEEEECCCC--cEE---EE-EecCCCCCCCCCccceEECCCCcEEEEe-------------CCCCeEEEEc
Q 020019 119 --FGNKYSAVAAYDLSTW--NRL---FL-TQLSGPSDGKSCADDVTVDAEGNAYVTD-------------VTGSKIWKVG 177 (332)
Q Consensus 119 --~~~~~~~l~~~d~~~g--~~~---~~-~~l~~~~~~~~~~ndiavd~dG~lyvtd-------------~~~~~I~~v~ 177 (332)
......+|.+|....+ ... .. ..++......+....|+++|||.|||+- ...+.|+|++
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 1112346777765443 211 11 1232211234677889999999999973 2368999999
Q ss_pred CCCceEEEecCCCC-----CCcccccCccccCeEEEccC-ceEEEEeCC
Q 020019 178 VKGEFLSIISSPLF-----TPKEWYKNLVGLNGIVYHPD-GFLIVIHTF 220 (332)
Q Consensus 178 ~~g~~~~~~~~~~~-----~~p~~~~~~~~~nGi~~~~d-G~Lyva~~~ 220 (332)
++|+... .++.. .......++-+|.|++|+|. |.||+++.+
T Consensus 155 ~dG~~p~--dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 155 PDGSIPA--DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp TTSSB-T--TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred ccCcCCC--CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence 9987321 11111 01112234455666666666 566666654
No 26
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=99.21 E-value=8.4e-09 Score=91.17 Aligned_cols=192 Identities=16% Similarity=0.213 Sum_probs=123.2
Q ss_pred cCCccccceEEcCCCCEEEEE-ec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 42 SSSFFRECAKWDDSGRRFIVS-FL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~-~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.+..+.+|+.+..+|.+|-++ .. ..+|.++++.+++ +.++ .-+ ++.. -..||++-. ++||....
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~----~~~~-~~l-~~~~---FgEGit~~~--d~l~qLTW--- 107 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK----VLQS-VPL-PPRY---FGEGITILG--DKLYQLTW--- 107 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS----EEEE-EE--TTT-----EEEEEEET--TEEEEEES---
T ss_pred CCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc----EEEE-EEC-Cccc---cceeEEEEC--CEEEEEEe---
Confidence 445588999998888888877 33 3479999999887 2221 111 1222 246899885 79999986
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCccccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~ 198 (332)
+.+..++||.++-+....+..++ + .=|++-|.+ .+|++|. ...|+.+||+. +....+....-..|
T Consensus 108 --k~~~~f~yd~~tl~~~~~~~y~~--E----GWGLt~dg~-~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~p---- 173 (264)
T PF05096_consen 108 --KEGTGFVYDPNTLKKIGTFPYPG--E----GWGLTSDGK-RLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRP---- 173 (264)
T ss_dssp --SSSEEEEEETTTTEEEEEEE-SS--S------EEEECSS-CEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE----
T ss_pred --cCCeEEEEccccceEEEEEecCC--c----ceEEEcCCC-EEEEECC-ccceEEECCcccceEEEEEEEECCEE----
Confidence 35678899999888777666642 2 235775533 5899985 78999999873 22222211111111
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---------CC---CCCCCeEEEeCC-CeEEE
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---------GP---LSFGDGLELLSP-TKLVV 265 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---------~~---~~~pdGi~~~~d-G~l~v 265 (332)
....|=+.+- +|.||..-+.+.+|.+||+.+|. .+..+.+.+ .. .....|||.|++ +++||
T Consensus 174 -v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~----V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 174 -VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK----VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp ----EEEEEEE-TTEEEEEETTSSEEEEEETTT-B----EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred -CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe----EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 2457888886 88999999999999999999983 455565421 01 245789999976 88999
Q ss_pred Ee
Q 020019 266 AG 267 (332)
Q Consensus 266 a~ 267 (332)
++
T Consensus 248 TG 249 (264)
T PF05096_consen 248 TG 249 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 97
No 27
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.07 E-value=3.7e-08 Score=87.46 Aligned_cols=195 Identities=17% Similarity=0.199 Sum_probs=111.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+.||++++++++||++... .+.|+.++.+ |++...+.+.+ ..-+-||+.-.+|.+.+++...+.++.++
T Consensus 23 e~SGLTy~pd~~tLfaV~d~-----~~~i~els~~-G~vlr~i~l~g----~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDE-----PGEIYELSLD-GKVLRRIPLDG----FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -EEEEEEETTTTEEEEEETT-----TTEEEEEETT---EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CccccEEcCCCCeEEEEECC-----CCEEEEEcCC-CCEEEEEeCCC----CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 47899999988999988763 5678999975 88888888742 34577899988888888888888888776
Q ss_pred C--CCceEEEec--CCCCCCcccccCccccCeEEEccCc-eEEEEeCCCC-eEEEEeCCCCCCccceeEEEE---ec--C
Q 020019 178 V--KGEFLSIIS--SPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIR---VA--G 246 (332)
Q Consensus 178 ~--~g~~~~~~~--~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~---~~--g 246 (332)
. +++...... .-.+..+ ...-.+.-|||+++.+ +||++....- +||.++..... ....... .. .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~--~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~---~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFP--NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG---FDLFVSDDQDLDDDK 167 (248)
T ss_dssp E----TT--EEEEEEEE---S-----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S---S--EEEE-HHHH-HT
T ss_pred EeccccccchhhceEEecccc--cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc---cceeecccccccccc
Confidence 5 332211100 0000000 0123456799999987 9998876543 68888872211 0121111 11 1
Q ss_pred CCCCCCCeEEEeCC-CeEEEEeCCceEEEE-cCCCceEEEEEeeec--C------CCcccceEEEE-ECCeEEEEE
Q 020019 247 GPLSFGDGLELLSP-TKLVVAGNPSARLVE-SSDGWETAAVVAKFS--G------PVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 247 ~~~~~pdGi~~~~d-G~l~va~~~~~~~v~-~~dg~~~~~~~~~~~--~------~~~~~pt~va~-~~g~lyv~~ 311 (332)
..+..|.++++++. |+||+-...+.+++. ..+| + +...+. . ..+.+|.++|+ .+|+|||.+
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~---~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-R---VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-C---EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 23456899999987 899999866555443 4556 3 333222 1 24678999999 889999965
No 28
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.03 E-value=1e-07 Score=84.63 Aligned_cols=205 Identities=12% Similarity=0.160 Sum_probs=111.8
Q ss_pred cccceEEcCCCCEEEE-EecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIV-SFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~-~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.|++++++.+.+++ .-..+.|+.++.+ ++ ++. .+ .-.+. .-+-||++-.+ |++.+++. +..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~----vlr--~i-~l~g~--~D~EgI~y~g~-~~~vl~~E-----r~~ 86 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK----VLR--RI-PLDGF--GDYEGITYLGN-GRYVLSEE-----RDQ 86 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT-------EEE--EE-E-SS---SSEEEEEE-ST-TEEEEEET-----TTT
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CC----EEE--EE-eCCCC--CCceeEEEECC-CEEEEEEc-----CCC
Confidence 5789999998665544 4557899999975 54 233 22 11121 24779999874 77666653 245
Q ss_pred eEEEEECCC--CcE----EEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCC-eEEEEcC--CCceEEEecCCCCCCc
Q 020019 125 AVAAYDLST--WNR----LFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGS-KIWKVGV--KGEFLSIISSPLFTPK 194 (332)
Q Consensus 125 ~l~~~d~~~--g~~----~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~-~I~~v~~--~g~~~~~~~~~~~~~p 194 (332)
.|+.++... ... ...+.+..+..++...-|++.|+. +++|++..... .||.++. .+.............
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~- 165 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD- 165 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-
Confidence 677776632 211 122344222223456889999998 46888765554 6888875 222111111100000
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC------CCCCCCCeEEEeCCCeEEEEe
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG------GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g------~~~~~pdGi~~~~dG~l~va~ 267 (332)
.......+-+++++|.- +||+-...+.+|..+|.+.. .+..+.+.. ..++.|.||++|++|+|||++
T Consensus 166 -~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~-----~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 166 -DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR-----VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-------EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred -ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC-----EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 00123357899999986 99999999999999996643 566666552 235679999999999999998
Q ss_pred CCceEE
Q 020019 268 NPSARL 273 (332)
Q Consensus 268 ~~~~~~ 273 (332)
..+..+
T Consensus 240 EpNlfy 245 (248)
T PF06977_consen 240 EPNLFY 245 (248)
T ss_dssp TTTEEE
T ss_pred CCceEE
Confidence 665343
No 29
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.00 E-value=2.6e-07 Score=84.24 Aligned_cols=210 Identities=14% Similarity=0.157 Sum_probs=123.7
Q ss_pred ccceEEcCCCCEEEEEec-----C-------CeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCC-----
Q 020019 47 RECAKWDDSGRRFIVSFL-----D-------GGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPR----- 108 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~-----~-------g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~----- 108 (332)
..++.+|+.|++|+.+.. . .+|..+|+.+.+ +..+..+... -.. +...+.|++|..+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~----li~~~~~p~~-~~~~~s~lndl~VD~~~~~~~~ 77 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ----LIRRYPFPPD-IAPPDSFLNDLVVDVRDGNCDD 77 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC----EEEEEE--CC-CS-TCGGEEEEEEECTTTTS-S
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc----EEEEEECChH-HcccccccceEEEEccCCCCcc
Confidence 357899999999998721 1 379999999876 3332222211 111 1256889999843
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEec---CCCCC------C-----CCCccceEECC---CC-cEEEEeCCC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQL---SGPSD------G-----KSCADDVTVDA---EG-NAYVTDVTG 170 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l---~~~~~------~-----~~~~ndiavd~---dG-~lyvtd~~~ 170 (332)
+.+|++|.. ...|.+||+++++..+...- ..|.. + .....+++..+ +| .||+.--..
T Consensus 78 ~~aYItD~~-----~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss 152 (287)
T PF03022_consen 78 GFAYITDSG-----GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS 152 (287)
T ss_dssp EEEEEEETT-----TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-
T ss_pred eEEEEeCCC-----cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC
Confidence 479999874 34799999999876543221 00100 0 11245567755 55 488887777
Q ss_pred CeEEEEcCC----CceEEEe-cCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 171 SKIWKVGVK----GEFLSII-SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 171 ~~I~~v~~~----g~~~~~~-~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
..+|++... .....-. ....++.- ........|+++|++|.||+++...+.|+++++.+.-. .+..+.+...
T Consensus 153 ~~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~-~~~~~~l~~d 229 (287)
T PF03022_consen 153 RKLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYT-PENFEILAQD 229 (287)
T ss_dssp SEEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB--GCCEEEEEE-
T ss_pred CcEEEEEHHHhhCccccccccccccceec--cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcC-ccchheeEEc
Confidence 788887642 1110000 00000000 00013568999999999999999999999999986311 1134444444
Q ss_pred CCCCCCCCeEEEeC--CCeEEEEeCC
Q 020019 246 GGPLSFGDGLELLS--PTKLVVAGNP 269 (332)
Q Consensus 246 g~~~~~pdGi~~~~--dG~l~va~~~ 269 (332)
.+.+..||++.++. +|.||+..|+
T Consensus 230 ~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 230 PRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CceeeccceeeeccccCceEEEEECc
Confidence 23478999999999 9999999765
No 30
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.99 E-value=4.6e-07 Score=85.61 Aligned_cols=193 Identities=17% Similarity=0.228 Sum_probs=117.1
Q ss_pred CCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 56 GRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 56 g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
++++++. ..+++|..+|..+.+ +.. ++. . .+....++.+.++...+|+++. .+.|.++|+.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~----~~~--~i~---~-~~~~h~~~~~s~Dgr~~yv~~r------dg~vsviD~~~~ 68 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNK----VVA--RIP---T-GGAPHAGLKFSPDGRYLYVANR------DGTVSVIDLATG 68 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-S----EEE--EEE-----STTEEEEEE-TT-SSEEEEEET------TSEEEEEETTSS
T ss_pred ccEEEEEecCCCEEEEEECCCCe----EEE--EEc---C-CCCceeEEEecCCCCEEEEEcC------CCeEEEEECCcc
Confidence 5677655 778999999987665 222 222 1 1112356778887445888864 357999999999
Q ss_pred cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG 212 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG 212 (332)
+....+.. ...|.++++.+||+ +|+++...+.+..+|.. .+....+......... ......+|..++..
T Consensus 69 ~~v~~i~~------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 69 KVVATIKV------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGR 139 (369)
T ss_dssp SEEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSS
T ss_pred cEEEEEec------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCC
Confidence 98877665 35688999999997 89999999999999975 4444333221111000 11234688888888
Q ss_pred -eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eCCce--EEEEcCCC
Q 020019 213 -FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GNPSA--RLVESSDG 279 (332)
Q Consensus 213 -~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~~~~--~~v~~~dg 279 (332)
..+++-..+++|+.+|..+.+. ...+.+... ..|.+..++++|+.|++ .+.+. .++....+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~--~~~~~i~~g----~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKN--LKVTTIKVG----RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSC--EEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred CEEEEEEccCCeEEEEEeccccc--cceeeeccc----ccccccccCcccceeeecccccceeEEEeeccc
Confidence 6667778899999999886521 123344432 46788999999986544 44433 33455555
No 31
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.98 E-value=2.2e-09 Score=79.55 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=52.5
Q ss_pred cceEECCC-CcEEEEeCC-----------------CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-e
Q 020019 153 DDVTVDAE-GNAYVTDVT-----------------GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-F 213 (332)
Q Consensus 153 ndiavd~d-G~lyvtd~~-----------------~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~ 213 (332)
||++|+++ |.+||||+. +|+++++||..+...++.. ++..||||++++|+ .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~----------~L~fpNGVals~d~~~ 70 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD----------GLYFPNGVALSPDESF 70 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE----------EESSEEEEEE-TTSSE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh----------CCCccCeEEEcCCCCE
Confidence 68999999 899999973 6899999999765444322 34578999999999 8
Q ss_pred EEEEeCCCCeEEEEeCCC
Q 020019 214 LIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~ 231 (332)
|+|+++...||.|+.+++
T Consensus 71 vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 71 VLVAETGRYRILRYWLKG 88 (89)
T ss_dssp EEEEEGGGTEEEEEESSS
T ss_pred EEEEeccCceEEEEEEeC
Confidence 999999999999999874
No 32
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.94 E-value=2.3e-07 Score=88.88 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=108.1
Q ss_pred EEEecCCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc----CCCccceEEEeCC-----
Q 020019 38 YHYHSSSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL----TGNGSLGLVLDHP----- 107 (332)
Q Consensus 38 i~~~~~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~gi~vd~~----- 107 (332)
++....++ .|.++++.++|++|++....|+|++++..++.. . ....-+.. ...++.||+++|+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-----~--~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-----K--VVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-----e--eeecCCceeccCCCCceeeEEECCCccccC
Confidence 33345566 999999999999888776579999998765431 1 11111111 1247899999964
Q ss_pred -CCeEEEEEeCcCCC----ccceEEEEECCC--CcE---E-EEEecCCCCCCCCCccceEECCCCcEEEEe--C------
Q 020019 108 -RNRLLVVAADVFGN----KYSAVAAYDLST--WNR---L-FLTQLSGPSDGKSCADDVTVDAEGNAYVTD--V------ 168 (332)
Q Consensus 108 -~g~l~v~~~~~~~~----~~~~l~~~d~~~--g~~---~-~~~~l~~~~~~~~~~ndiavd~dG~lyvtd--~------ 168 (332)
++.||++....... ...+|.+|.... .+. . .+..+ |....++...|+++|||.|||+- .
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~l--P~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~ 172 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGL--PAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGA 172 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecC--CCCCCcCCceEEECCCCcEEEEECCCCCCCcc
Confidence 35799986431110 145787776542 111 1 11223 22335778889999999999952 2
Q ss_pred ------------------------CCCeEEEEcCCCceEEEecCCCCC--Cc-ccccCccccCeEEEccCceEEEEeCCC
Q 020019 169 ------------------------TGSKIWKVGVKGEFLSIISSPLFT--PK-EWYKNLVGLNGIVYHPDGFLIVIHTFS 221 (332)
Q Consensus 169 ------------------------~~~~I~~v~~~g~~~~~~~~~~~~--~p-~~~~~~~~~nGi~~~~dG~Lyva~~~~ 221 (332)
..|.|+|+++||+... +++... .| .+..++-+|.|++|+|+|.||+++.+.
T Consensus 173 n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~--dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 173 NFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK--DNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred cccCcchhccccccccccccCcccCceEEEEEcCCCCCCC--CCCccCCCcceEEEEeccccceeEECCCCCEEEEecCC
Confidence 1347888888876321 121111 01 133466789999999999999999864
No 33
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.94 E-value=8.8e-07 Score=82.49 Aligned_cols=209 Identities=13% Similarity=0.167 Sum_probs=113.6
Q ss_pred CccccceEEcCCCCEEEEE-ec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVS-FL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~-~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
+.+|+..++++||+.+|+. .. ...|.++|..+++. .. ++ .-|+ +.......++ .....| .+.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv----v~--ei-~vp~----~~~vy~t~e~-~~~~~~-~Dg--- 167 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF----VR--MM-DVPD----CYHIFPTAND-TFFMHC-RDG--- 167 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE----EE--EE-eCCC----CcEEEEecCC-ccEEEe-ecC---
Confidence 3466799999999976654 55 78999999987762 22 12 1232 4444444443 444333 221
Q ss_pred ccceEEEEECCCCcEEE-EEec-CCCCCC-CCCccceEECC-CCc-EEEEeCCCCeEEEEcCCCceEEE---ecCCCCCC
Q 020019 122 KYSAVAAYDLSTWNRLF-LTQL-SGPSDG-KSCADDVTVDA-EGN-AYVTDVTGSKIWKVGVKGEFLSI---ISSPLFTP 193 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~-~~~l-~~~~~~-~~~~ndiavd~-dG~-lyvtd~~~~~I~~v~~~g~~~~~---~~~~~~~~ 193 (332)
......+|. +|+... ...+ ...... ..+| .+.+ +|. +|++.. |.|+.+|..+..... +..-.+..
T Consensus 168 -~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 168 -SLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred -ceEEEEecC-CCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccc
Confidence 111122333 233221 1111 000000 1233 3344 665 666665 999999965432211 11111110
Q ss_pred --cccccCccccCeEEEccCc-eEEEEe---------CCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 194 --KEWYKNLVGLNGIVYHPDG-FLIVIH---------TFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 194 --p~~~~~~~~~nGi~~~~dG-~Lyva~---------~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
..+.+ .+...+++++|| +|||+. ...++|+.||..++ +.+..+.+. ..|.+|++++||
T Consensus 241 ~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~vG----~~~~~iavS~Dg 310 (352)
T TIGR02658 241 KADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIELG----HEIDSINVSQDA 310 (352)
T ss_pred cccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEeCC----CceeeEEECCCC
Confidence 11111 233349999998 999953 23478999999987 356666654 478999999997
Q ss_pred e--EEEEeCCc--eEEEEcCCCceEEEEEeee
Q 020019 262 K--LVVAGNPS--ARLVESSDGWETAAVVAKF 289 (332)
Q Consensus 262 ~--l~va~~~~--~~~v~~~dg~~~~~~~~~~ 289 (332)
+ ||+++..+ ..+++...+ ++++.+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~----k~i~~i 338 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETG----KELSSV 338 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCC----eEEeee
Confidence 7 56665332 334455545 555554
No 34
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.93 E-value=8.4e-08 Score=98.19 Aligned_cols=206 Identities=15% Similarity=0.166 Sum_probs=128.3
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc------c--CcCC----------CccceEEEeC
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD------L--ELTG----------NGSLGLVLDH 106 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~------~--~~~~----------~~~~gi~vd~ 106 (332)
+-.-+|++| +|.+|+++....+|||+..-..+-+ ....+.... | +..| ..|.||++|.
T Consensus 408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~---~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk 484 (1899)
T KOG4659|consen 408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDS---RNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK 484 (1899)
T ss_pred ceeEEEecCcCceEEecCCCcceEEEeccCCcccc---ccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc
Confidence 445689998 5777777777889999975433210 000011110 1 1111 2589999999
Q ss_pred CCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCC----C--CC--------CCCCccceEECC-CCcEEEEeCCCC
Q 020019 107 PRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSG----P--SD--------GKSCADDVTVDA-EGNAYVTDVTGS 171 (332)
Q Consensus 107 ~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~----~--~~--------~~~~~ndiavd~-dG~lyvtd~~~~ 171 (332)
. |.||+++.. .|.+.|.. |-....+.-.. | .. ...-|.++|++| |+.+||-| ++
T Consensus 485 ~-g~lYfaD~t-------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~n 553 (1899)
T KOG4659|consen 485 M-GNLYFADGT-------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TN 553 (1899)
T ss_pred C-CcEEEeccc-------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cc
Confidence 6 999999863 45556642 33222211100 0 00 124689999999 67899998 58
Q ss_pred eEEEEcCCCceEEEecCCCC-CCcc---------cccCccccCeEEEccCceEEEEeCCCCeEEEEeCC--CCCCcccee
Q 020019 172 KIWKVGVKGEFLSIISSPLF-TPKE---------WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV--DGVGEGEEI 239 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~~~-~~p~---------~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~--~~~~~~~~~ 239 (332)
.|++++++++....++.|.- ..|. -...+..+..|+++++|.|||++++..+|-|+..- ++ .+
T Consensus 554 vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-----~i 628 (1899)
T KOG4659|consen 554 VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDG-----TI 628 (1899)
T ss_pred eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCc-----eE
Confidence 99999999887755443321 1121 12244567899999999999999998777554322 12 11
Q ss_pred EEEE-----------------------ecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 240 KLIR-----------------------VAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 240 ~~v~-----------------------~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
..+. ...+.++.|..+|+.|||.+|+|+.++
T Consensus 629 ~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 629 SILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred EEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence 1111 011457889999999999999998544
No 35
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.90 E-value=4.5e-07 Score=93.05 Aligned_cols=239 Identities=18% Similarity=0.210 Sum_probs=147.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc-CCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL-TGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.|-.+|+.+||.+|+++. +-|.|+.+++... +.+. -+. ...+-.-|+++|-+|.|||++.. ..
T Consensus 366 aPvala~a~DGSl~VGDf--NyIRRI~~dg~v~--------tIl~-L~~t~~sh~Yy~AvsPvdgtlyvSdp~-----s~ 429 (1899)
T KOG4659|consen 366 APVALAYAPDGSLIVGDF--NYIRRISQDGQVS--------TILT-LGLTDTSHSYYIAVSPVDGTLYVSDPL-----SK 429 (1899)
T ss_pred ceeeEEEcCCCcEEEccc--hheeeecCCCceE--------EEEE-ecCCCccceeEEEecCcCceEEecCCC-----cc
Confidence 677799999999999874 5688898874421 2221 111 11256789999988999999863 23
Q ss_pred eEEEEE-CCCCcEE----EE-------EecCC-CCC-------CCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE
Q 020019 125 AVAAYD-LSTWNRL----FL-------TQLSG-PSD-------GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS 184 (332)
Q Consensus 125 ~l~~~d-~~~g~~~----~~-------~~l~~-~~~-------~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~ 184 (332)
++++.. ++..... .. .+... .++ ...+|.||++|.+|++|++|. -.|.++|.+|-...
T Consensus 430 qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIst 507 (1899)
T KOG4659|consen 430 QVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIIST 507 (1899)
T ss_pred eEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEE
Confidence 444432 2111111 00 01100 011 136899999999999999995 46778999988777
Q ss_pred EecCCCCCC-cc--------cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEE-------ecC-
Q 020019 185 IISSPLFTP-KE--------WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR-------VAG- 246 (332)
Q Consensus 185 ~~~~~~~~~-p~--------~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~-------~~g- 246 (332)
++++..... |. ..-.+-.|..++++|=. .|||-+ ++-|+||+.... +..+. +++
T Consensus 508 lig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~r------V~Ii~GrP~hC~~a~~ 579 (1899)
T KOG4659|consen 508 LIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHR------VRIILGRPTHCDLANA 579 (1899)
T ss_pred eccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCcc------EEEEcCCccccccCCC
Confidence 765433322 21 11245679999999965 999976 467888887632 22121 111
Q ss_pred ----------CCCCCCCeEEEeCCCeEEEEeCCc---eEE-EEcCCCceEEEEEee--------------ec-------C
Q 020019 247 ----------GPLSFGDGLELLSPTKLVVAGNPS---ARL-VESSDGWETAAVVAK--------------FS-------G 291 (332)
Q Consensus 247 ----------~~~~~pdGi~~~~dG~l~va~~~~---~~~-v~~~dg~~~~~~~~~--------------~~-------~ 291 (332)
..+-.+..|++..+|.|||++... +++ ....|| +..-+... ++ .
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~ 658 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQ 658 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhc
Confidence 113346789999999999997432 121 234555 44322211 11 1
Q ss_pred CCcccceEEEE-ECCeEEEEE
Q 020019 292 PVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 292 ~~~~~pt~va~-~~g~lyv~~ 311 (332)
..++.|.++|+ .+|++||+.
T Consensus 659 A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred cccCCcceEEECCCCcEEEec
Confidence 13788999999 899999954
No 36
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.89 E-value=3.5e-06 Score=79.60 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=113.1
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
+.++++.+||+.+|+...+|.|.++|+.+.+. .. ++. .|..|.|++++++...+|+++.. .+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----v~--~i~-----~G~~~~~i~~s~DG~~~~v~n~~-----~~~v 102 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----VA--TIK-----VGGNPRGIAVSPDGKYVYVANYE-----PGTV 102 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSE----EE--EEE------SSEEEEEEE--TTTEEEEEEEE-----TTEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccE----EE--EEe-----cCCCcceEEEcCCCCEEEEEecC-----CCce
Confidence 45678999999777665689999999987762 22 222 23478999999973346666542 4578
Q ss_pred EEEECCCCcEEEEEecCC-CCC-CCCCccceEECCCCcEE-EEeCCCCeEEEEcCC-CceE--EEecCCCCCCcccccCc
Q 020019 127 AAYDLSTWNRLFLTQLSG-PSD-GKSCADDVTVDAEGNAY-VTDVTGSKIWKVGVK-GEFL--SIISSPLFTPKEWYKNL 200 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~-~~~-~~~~~ndiavd~dG~ly-vtd~~~~~I~~v~~~-g~~~--~~~~~~~~~~p~~~~~~ 200 (332)
.++|.++.++...+...+ +.. ..++..++...+.+..| ++-...+.|+.+|.. .+.. ......
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g----------- 171 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG----------- 171 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-----------
Confidence 899999988887665421 111 13456677777776644 556678999999854 2322 222222
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEe
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~ 267 (332)
..|.+..++++| +++++...+++|..+|.++++ .+..+.....+.+.|-.--.++. |-+|.+.
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred ccccccccCcccceeeecccccceeEEEeeccce----EEEEeeccccccccccccccCCCcceEEeec
Confidence 246788999999 899999999999999988762 34444432112122211124555 6777775
No 37
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.85 E-value=1.1e-07 Score=93.78 Aligned_cols=193 Identities=20% Similarity=0.183 Sum_probs=135.2
Q ss_pred CCccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
++.-+-||++|=..++.|++ +....|.+-++.+++. + +++ ..++. +|.||+||--+.++|.++.-..
T Consensus 1023 p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep-----~--ti~-n~~L~--SPEGiAVDh~~Rn~ywtDS~lD-- 1090 (1289)
T KOG1214|consen 1023 PGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEP-----E--TIV-NSGLI--SPEGIAVDHIRRNMYWTDSVLD-- 1090 (1289)
T ss_pred ccceeeeeecccccceEEEeecCCCccccccccCCCC-----c--eee-cccCC--Cccceeeeeccceeeeeccccc--
Confidence 44567889999888877665 8778899998875542 2 444 33443 8999999987777898875321
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC--CCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
++ .+..+|.+-.+++.... .-.|.+|++|+= |+||.|||. +..|-+.++||+-.+++-+..
T Consensus 1091 ~I-evA~LdG~~rkvLf~td-------LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~D-------- 1154 (1289)
T KOG1214|consen 1091 KI-EVALLDGSERKVLFYTD-------LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTD-------- 1154 (1289)
T ss_pred hh-heeecCCceeeEEEeec-------ccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecc--------
Confidence 22 23444443223332222 467888999995 799999996 788999999999776653332
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL 273 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~ 273 (332)
..-|||+.|+|.. .|-+.|.+++|+--+.++.. ..+.+ . ..+.+|-+|.-+.+. +|-+++..+++
T Consensus 1155 -igLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~-----gRR~i-~--~~LqYPF~itsy~~~-fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1155 -IGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT-----GRRVI-Q--NNLQYPFSITSYADH-FYHTDWKRNGV 1220 (1289)
T ss_pred -cCCCCCceeCcccceeeEEecCCcceeEecCCCC-----cchhh-h--hcccCceeeeecccc-ceeeccccCce
Confidence 2348999999998 99999999999988877732 12212 2 257789999888765 99998654443
No 38
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.74 E-value=6.9e-07 Score=76.74 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=101.0
Q ss_pred CccceEEEeCCCCeEEEEEeCcCC----CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCC
Q 020019 97 NGSLGLVLDHPRNRLLVVAADVFG----NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGS 171 (332)
Q Consensus 97 ~~~~gi~vd~~~g~l~v~~~~~~~----~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~ 171 (332)
+..+.-.+||+ |+.|+..+.... ...+.|+.|- ..+++...+. ....+|+++.|.+. .+|+.|+.+-
T Consensus 109 nR~NDgkvdP~-Gryy~GtMad~~~~le~~~g~Ly~~~-~~h~v~~i~~------~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 109 NRLNDGKVDPD-GRYYGGTMADFGDDLEPIGGELYSWL-AGHQVELIWN------CVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred cccccCccCCC-CceeeeeeccccccccccccEEEEec-cCCCceeeeh------hccCCccccccccCcEEEEEccCce
Confidence 35667788996 998887764221 1223444443 3344443322 24678999999986 5899999999
Q ss_pred eE--EEEcCC-CceE---EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 172 KI--WKVGVK-GEFL---SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 172 ~I--~~v~~~-g~~~---~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
.| |.+|-. |.+. .+++...- .|. ...-|+|+++|.+|.|||+.+++++|+++|+.+|+ ...++.++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~-~~~---e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK----~L~eiklP 252 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKS-QPF---ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK----ILLEIKLP 252 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccC-CCc---CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc----EEEEEEcC
Confidence 99 555433 4332 11111110 111 23468999999999999999999999999999984 57777776
Q ss_pred CCCCCCCCeEEEeCC--CeEEEEeCC
Q 020019 246 GGPLSFGDGLELLSP--TKLVVAGNP 269 (332)
Q Consensus 246 g~~~~~pdGi~~~~d--G~l~va~~~ 269 (332)
. ......++... ..+||+.+.
T Consensus 253 t---~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 253 T---PQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred C---CceEEEEecCCCccEEEEEehh
Confidence 2 34556777643 568888654
No 39
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.64 E-value=2.2e-06 Score=84.78 Aligned_cols=228 Identities=16% Similarity=0.112 Sum_probs=144.3
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECC
Q 020019 53 DDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLS 132 (332)
Q Consensus 53 d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~ 132 (332)
.+-|..++.. ...+|.++.....++..+ +..+++.-|. .-+.||.+|-....+|..+.... .|.+-.++
T Consensus 987 ~~~gt~LL~a-qg~~I~~lplng~~~~K~--~ak~~l~~p~---~IiVGidfDC~e~mvyWtDv~g~-----SI~rasL~ 1055 (1289)
T KOG1214|consen 987 PSVGTFLLYA-QGQQIGYLPLNGTRLQKD--AAKTLLSLPG---SIIVGIDFDCRERMVYWTDVAGR-----SISRASLE 1055 (1289)
T ss_pred CCCcceEEEe-ccceEEEeecCcchhchh--hhhceEeccc---ceeeeeecccccceEEEeecCCC-----cccccccc
Confidence 3445544333 357788887664433110 1123443232 35789999987667888876432 23333455
Q ss_pred CCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC
Q 020019 133 TWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD 211 (332)
Q Consensus 133 ~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d 211 (332)
.++.+..+. ++...|-|||||--+ |+|.+|+....|-+-..+|+...++-.. ++.+|.+|++|+=
T Consensus 1056 G~Ep~ti~n-----~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~t---------dLVNPR~iv~D~~ 1121 (1289)
T KOG1214|consen 1056 GAEPETIVN-----SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYT---------DLVNPRAIVVDPI 1121 (1289)
T ss_pred CCCCceeec-----ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEee---------cccCcceEEeecc
Confidence 445544433 235778899999876 6999999999988877888866554222 4568899999998
Q ss_pred c-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE--EEEeCCceEE-EEcCCCceEEEE
Q 020019 212 G-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL--VVAGNPSARL-VESSDGWETAAV 285 (332)
Q Consensus 212 G-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l--~va~~~~~~~-v~~~dg~~~~~~ 285 (332)
+ +||++|++ +-+|-+.++++. -.+|-+. ..+.-|.|+.+++.-++ ||-... .++ -..++|....++
T Consensus 1122 rgnLYwtDWnRenPkIets~mDG~------NrRilin-~DigLPNGLtfdpfs~~LCWvDAGt-~rleC~~p~g~gRR~i 1193 (1289)
T KOG1214|consen 1122 RGNLYWTDWNRENPKIETSSMDGE------NRRILIN-TDIGLPNGLTFDPFSKLLCWVDAGT-KRLECTLPDGTGRRVI 1193 (1289)
T ss_pred cCceeeccccccCCcceeeccCCc------cceEEee-cccCCCCCceeCcccceeeEEecCC-cceeEecCCCCcchhh
Confidence 7 99999996 457888888743 1223333 46788999999988553 443222 121 235666322233
Q ss_pred EeeecCCCcccceEEEEECCeEEEEEecCcccc
Q 020019 286 VAKFSGPVHRLATAATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 286 ~~~~~~~~~~~pt~va~~~g~lyv~~~~g~~~~ 318 (332)
.. .+++|-+++-.++.+|-+.|..+.+-
T Consensus 1194 ~~-----~LqYPF~itsy~~~fY~TDWk~n~vv 1221 (1289)
T KOG1214|consen 1194 QN-----NLQYPFSITSYADHFYHTDWKRNGVV 1221 (1289)
T ss_pred hh-----cccCceeeeeccccceeeccccCceE
Confidence 33 37888888876666888887776643
No 40
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.61 E-value=3.2e-07 Score=84.37 Aligned_cols=146 Identities=22% Similarity=0.306 Sum_probs=96.2
Q ss_pred CCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-------
Q 020019 149 KSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------- 220 (332)
Q Consensus 149 ~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------- 220 (332)
..+|-|++++..| ++||+|.. -.+++++++|+....+.++.... .+...|++.++++|.+|++|+.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G~-----~~kf~N~ldI~~~g~vyFTDSSsk~~~rd 187 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEGK-----PFKFLNDLDIDPEGVVYFTDSSSKYDRRD 187 (376)
T ss_pred cCCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccCe-----eeeecCceeEcCCCeEEEeccccccchhh
Confidence 4899999999996 89999976 45789999977544433322222 2356899999998899999984
Q ss_pred ----------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE-EEeCCceEE--E-EcCCCceEEEEE
Q 020019 221 ----------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV-VAGNPSARL--V-ESSDGWETAAVV 286 (332)
Q Consensus 221 ----------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~-va~~~~~~~--v-~~~dg~~~~~~~ 286 (332)
+||++|+|+.+. ..+ +-. ..+..|.|+++.+|+... +++....++ + .......+.++.
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK-----~~~-VLl--d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvF 259 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTK-----VTK-VLL--DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVF 259 (376)
T ss_pred eEEeeecCCCccceEEecCccc-----chh-hhh--hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhH
Confidence 578888888765 222 223 357889999999997754 444322221 1 222111111222
Q ss_pred eeecCCCcccceEEEE-ECCeEEEEE
Q 020019 287 AKFSGPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 287 ~~~~~~~~~~pt~va~-~~g~lyv~~ 311 (332)
.. .--.+|+++.. .+|..||+-
T Consensus 260 a~---~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 260 AE---GLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred hh---cCCCCCcceeECCCCCEEEEE
Confidence 21 11246899999 889999954
No 41
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=2e-05 Score=70.09 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=122.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEE-
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKV- 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v- 176 (332)
...+++.+|+++.||.+.+. ...+...+. .|++...+++.+ .+-|-.|..-.+|..-++|....+++.+
T Consensus 87 nvS~LTynp~~rtLFav~n~-----p~~iVElt~-~GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNK-----PAAIVELTK-EGDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEecCC-----CceEEEEec-CCceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 47799999998999988763 456777776 489988888742 4567788888888777899988887764
Q ss_pred -cCCCceEEEec--CCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCC--C-
Q 020019 177 -GVKGEFLSIIS--SPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGG--P- 248 (332)
Q Consensus 177 -~~~g~~~~~~~--~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~--~- 248 (332)
+++++...... -+....+. .-.|--|+++++.. .||++...+ -+||.++-..... .+.....+.. +
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k---~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l---~~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNK---KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL---SVHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceEEeccccCC---CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc---ccccccCcccccce
Confidence 45555443321 01111111 13567799999998 999997744 3678877432111 0110011100 1
Q ss_pred -CCCCCeEEEeCC-CeEEEEeCCceEEEE-cCCCceEEEEE--eeec--CCCcccceEEEE-ECCeEEEEE
Q 020019 249 -LSFGDGLELLSP-TKLVVAGNPSARLVE-SSDGWETAAVV--AKFS--GPVHRLATAATV-KDGRVYLNH 311 (332)
Q Consensus 249 -~~~pdGi~~~~d-G~l~va~~~~~~~v~-~~dg~~~~~~~--~~~~--~~~~~~pt~va~-~~g~lyv~~ 311 (332)
+.-..|+.+++. |.|+|-...+..++. ..+|.....+. +... .....++.++++ ++|.|||.+
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 234568999864 788888766555444 34452222221 2211 123677899999 889999954
No 42
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.2e-05 Score=65.52 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=116.4
Q ss_pred CCccccceEEcCCCCEEEEE--ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS--FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~--~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
...+..|+.++.. .+|.+. ....+|.+.+..+++. ..+ ..+. .|.. -..||..-. +.+|.....
T Consensus 44 s~sfTQGL~~~~g-~i~esTG~yg~S~ir~~~L~~gq~---~~s-~~l~-~~~~---FgEGit~~g--d~~y~LTw~--- 109 (262)
T COG3823 44 STSFTQGLEYLDG-HILESTGLYGFSKIRVSDLTTGQE---IFS-EKLA-PDTV---FGEGITKLG--DYFYQLTWK--- 109 (262)
T ss_pred hhhhhcceeeeCC-EEEEeccccccceeEEEeccCceE---EEE-eecC-Cccc---cccceeecc--ceEEEEEec---
Confidence 3447789998764 555554 3356799999987762 111 1111 1222 234677654 688988762
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-----ceEEEecCCCCCCcc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-----EFLSIISSPLFTPKE 195 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-----~~~~~~~~~~~~~p~ 195 (332)
.+.-++||.++-+....+..++.+ =+++-|.+ +++-+| ++..++..||+. +..+.. +. .|
T Consensus 110 --egvaf~~d~~t~~~lg~~~y~GeG------WgLt~d~~-~Limsd-GsatL~frdP~tfa~~~~v~VT~-~g---~p- 174 (262)
T COG3823 110 --EGVAFKYDADTLEELGRFSYEGEG------WGLTSDDK-NLIMSD-GSATLQFRDPKTFAELDTVQVTD-DG---VP- 174 (262)
T ss_pred --cceeEEEChHHhhhhcccccCCcc------eeeecCCc-ceEeeC-CceEEEecCHHHhhhcceEEEEE-CC---ee-
Confidence 445678898876655444443211 23444433 466665 456666667652 222211 11 12
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC---------CCCCCCCeEEEeCC-CeEEE
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG---------GPLSFGDGLELLSP-TKLVV 265 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g---------~~~~~pdGi~~~~d-G~l~v 265 (332)
....|-+.+- ||.||..-+.+.+|.||++++|+ .+..+.+++ .....++|||.+++ +++|+
T Consensus 175 ----v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr----V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 175 ----VSKLNELEWV-DGELYANVWQTTRIARIDPDSGR----VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred ----cccccceeee-ccEEEEeeeeecceEEEcCCCCc----EEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 2356788886 89999999999999999999984 566666543 12346899999987 58999
Q ss_pred EeC
Q 020019 266 AGN 268 (332)
Q Consensus 266 a~~ 268 (332)
++-
T Consensus 246 TGK 248 (262)
T COG3823 246 TGK 248 (262)
T ss_pred ecC
Confidence 973
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.53 E-value=0.00028 Score=61.78 Aligned_cols=218 Identities=15% Similarity=0.188 Sum_probs=134.6
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.+.++++.+++...++.|..++..+++. .. .+.... .....+.+.++ +.++++... .+.+.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~----~~--~~~~~~----~~i~~~~~~~~-~~~~~~~~~-----~~~i~ 118 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGEC----VR--TLTGHT----SYVSSVAFSPD-GRILSSSSR-----DKTIK 118 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccc----eE--EEeccC----CcEEEEEEcCC-CCEEEEecC-----CCeEE
Confidence 4788999987777776689999999876542 11 222111 25678889886 666666541 35788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
.||.++++....... .......+++++++.++++....+.|..++.. ++....+.. .......+
T Consensus 119 ~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----------~~~~i~~~ 183 (289)
T cd00200 119 VWDVETGKCLTTLRG-----HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG----------HTGEVNSV 183 (289)
T ss_pred EEECCCcEEEEEecc-----CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec----------CccccceE
Confidence 999987665543331 12457789999998777776667888888876 443322211 11245789
Q ss_pred EEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC--CceEEEEcCCCceEE
Q 020019 207 VYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN--PSARLVESSDGWETA 283 (332)
Q Consensus 207 ~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~--~~~~~v~~~dg~~~~ 283 (332)
++++++ .++++.. .+.|..++...++ .+..+.. .......+++++++.++++.. +...+.....+
T Consensus 184 ~~~~~~~~l~~~~~-~~~i~i~d~~~~~----~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---- 251 (289)
T cd00200 184 AFSPDGEKLLSSSS-DGTIKLWDLSTGK----CLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---- 251 (289)
T ss_pred EECCCcCEEEEecC-CCcEEEEECCCCc----eecchhh---cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc----
Confidence 999999 7776655 7889889988652 3333321 113567889999888888864 33333333334
Q ss_pred EEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 284 AVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 284 ~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
.....+... ....+++++ .++.+++
T Consensus 252 ~~~~~~~~~-~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 252 ECVQTLSGH-TNSVTSLAWSPDGKRLA 277 (289)
T ss_pred eeEEEcccc-CCcEEEEEECCCCCEEE
Confidence 222222211 223567777 4444444
No 44
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.52 E-value=5.6e-06 Score=73.42 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=102.5
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.||+++..+ ++|...-.++...++|+.+-+. .. ++ .-++ -..||+.|. ..||++++ .+
T Consensus 90 ~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~----~~--~~-~y~~----EGWGLt~dg--~~Li~SDG------S~ 149 (264)
T PF05096_consen 90 YFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK----IG--TF-PYPG----EGWGLTSDG--KRLIMSDG------SS 149 (264)
T ss_dssp --EEEEEEETT-EEEEEESSSSEEEEEETTTTEE----EE--EE-E-SS----S--EEEECS--SCEEEE-S------SS
T ss_pred ccceeEEEECC-EEEEEEecCCeEEEEccccceE----EE--EE-ecCC----cceEEEcCC--CEEEEECC------cc
Confidence 36678887753 4665566678888998875441 12 22 1222 357999775 68999985 46
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCc-----cccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPK-----EWYK 198 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p-----~~~~ 198 (332)
+|+.+|+++.+....+++...+......|-+-.- +|.||.--+....|.+|||. |+...+++-..+..+ ...+
T Consensus 150 ~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~ 228 (264)
T PF05096_consen 150 RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQP 228 (264)
T ss_dssp EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--
T ss_pred ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccc
Confidence 8999999988877776663222224678888775 78999999999999999997 777766532211100 0012
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~ 230 (332)
...-.||||++++. ++||+--.=.++|+|.+.
T Consensus 229 ~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 229 DDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred cCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 24568999999998 999987666678887653
No 45
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.52 E-value=5.9e-06 Score=79.36 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=96.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCC--CCCCCccceEECCC-------CcEEEEeC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPS--DGKSCADDVTVDAE-------GNAYVTDV 168 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~--~~~~~~ndiavd~d-------G~lyvtd~ 168 (332)
.|.+|++.++ |++||+... .++|.+++..++.......++... .+...+.||+++|+ +.||++-+
T Consensus 31 ~Pw~maflPD-G~llVtER~-----~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 31 KPWALLWGPD-NQLWVTERA-----TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CceEEEEcCC-CeEEEEEec-----CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 7999999997 999999752 367888887666543333342111 13567899999976 25898742
Q ss_pred C---------CCeEEEEcCC--C-ce---EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-------------
Q 020019 169 T---------GSKIWKVGVK--G-EF---LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------------- 220 (332)
Q Consensus 169 ~---------~~~I~~v~~~--g-~~---~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------------- 220 (332)
. ..+|.|+..+ + +. ..++.. .|. ...=.-..|+|+|||.|||+--.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~----lP~--~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAG----LPA--GNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEec----CCC--CCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 1 4578776543 1 11 122211 010 00112347889999999996443
Q ss_pred -------------------CCeEEEEeCCCCCCccce-----eEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 221 -------------------SGNLFKIDIVDGVGEGEE-----IKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 221 -------------------~~~i~~id~~~~~~~~~~-----~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.++|+||+++..-..+.+ ..+|-.. .+..|.||+++++|+||++++.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--G~RNp~Gla~dp~G~Lw~~e~G 249 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--GHRNPQGLAFTPDGTLYASEQG 249 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE--eccccceeEECCCCCEEEEecC
Confidence 237899998742111111 1223332 3578999999999999999753
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.51 E-value=0.00043 Score=60.63 Aligned_cols=185 Identities=15% Similarity=0.160 Sum_probs=118.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+.++++++.+++...+|.|..++..+++. .. .... .. .....+.+.++...++++.. .+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~----~~--~~~~-~~---~~i~~~~~~~~~~~l~~~~~------~~~ 74 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL----LR--TLKG-HT---GPVRDVAASADGTYLASGSS------DKT 74 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc----EE--EEec-CC---cceeEEEECCCCCEEEEEcC------CCe
Confidence 456789999988887776688998888775542 11 2211 11 13357888886335555543 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+.+||.++++....... .......+.+.++++++++....+.|..++.. ++....+.. ......
T Consensus 75 i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~ 139 (289)
T cd00200 75 IRLWDLETGECVRTLTG-----HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVN 139 (289)
T ss_pred EEEEEcCcccceEEEec-----cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEE
Confidence 88999987654433321 12356779999998888887778888888876 444332221 112457
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC-eEEEEeC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT-KLVVAGN 268 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG-~l~va~~ 268 (332)
.+++++++.++++....+.|..++...++ ....+.. .......+.+.+++ .++++..
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGK----CVATLTG---HTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccc----cceeEec---CccccceEEECCCcCEEEEecC
Confidence 89999988555555567789889887552 3333332 22356788999987 4555553
No 47
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=1.7e-05 Score=78.00 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=113.2
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEe--CCCCeEEEEEeCcC--C---------
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLD--HPRNRLLVVAADVF--G--------- 120 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd--~~~g~l~v~~~~~~--~--------- 120 (332)
||+.+|.+ -.+.||.||+.+.-++. ..+.-|... +..|+++. |+++ ||..+... +
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~-------~i~~iPn~~--~~Hg~~~~~~p~t~--yv~~~~e~~~PlpnDGk~l~ 208 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCD-------KITELPNVQ--GIHGLRPQKIPRTG--YVFCNGEFRIPLPNDGKDLD 208 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeec-------eeEeCCCcc--CccccCccccCCcc--EEEeCcccccccCCCCCEee
Confidence 56666666 55789999998865531 233334332 44566655 3323 33332211 0
Q ss_pred ---CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--------------CCeEEEEcC----
Q 020019 121 ---NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--------------GSKIWKVGV---- 178 (332)
Q Consensus 121 ---~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--------------~~~I~~v~~---- 178 (332)
.-.+-+.++|.++.++.+.+.+. .+|..++++++|. +|+|... ...+..|+.
T Consensus 209 ~~~ey~~~vSvID~etmeV~~qV~Vd------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie 282 (635)
T PRK02888 209 DPKKYRSLFTAVDAETMEVAWQVMVD------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE 282 (635)
T ss_pred cccceeEEEEEEECccceEEEEEEeC------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH
Confidence 01234567788876666655552 3788899999985 7888521 112333332
Q ss_pred ----CCceEE-------EecCCC-----CCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCC------Cc
Q 020019 179 ----KGEFLS-------IISSPL-----FTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGV------GE 235 (332)
Q Consensus 179 ----~g~~~~-------~~~~~~-----~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~------~~ 235 (332)
+|+... +++... ...-..++....|.|+.++||| ++|+++..++.+..||.++.+ +.
T Consensus 283 a~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 283 EAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred HhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 232211 111111 1111123456789999999999 999999999999999988632 10
Q ss_pred --cceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 236 --GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 236 --~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
...+.++++. .+|-..++|++|+.|++-
T Consensus 363 ~~~~vvaevevG----lGPLHTaFDg~G~aytsl 392 (635)
T PRK02888 363 PRDAVVAEPELG----LGPLHTAFDGRGNAYTTL 392 (635)
T ss_pred ccceEEEeeccC----CCcceEEECCCCCEEEeE
Confidence 1122223321 578899999999999995
No 48
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=0.00011 Score=65.63 Aligned_cols=209 Identities=12% Similarity=0.161 Sum_probs=125.3
Q ss_pred cccceEEcCCCCEEEEEec-CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFL-DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~-~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+++|+|+.+.+|+... ...|.+++.. |+. +. +.. -+++ .-|.+|+.-.. |...+++. +..
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~-Gdl----ir--tiP-L~g~--~DpE~Ieyig~-n~fvi~dE-----R~~ 150 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDL----IR--TIP-LTGF--SDPETIEYIGG-NQFVIVDE-----RDR 150 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecC-Cce----EE--Eec-cccc--CChhHeEEecC-CEEEEEeh-----hcc
Confidence 4568999999998887744 4579999876 441 22 121 1222 24678888763 55444443 334
Q ss_pred eEEEEECCCC-cEEE----EEecCCCCCCCCCccceEECCC-CcEEEEeCCCC-eEEEEcCCCceEEEecCCCCCCcccc
Q 020019 125 AVAAYDLSTW-NRLF----LTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGS-KIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 125 ~l~~~d~~~g-~~~~----~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~-~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
.++.+-.+.+ .+.. .+++..-...+...-|+|.|+. +++||+-..+. .||.++..-...... ....|...
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~---~~~~~~~~ 227 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH---ASLDPTAD 227 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc---cccCcccc
Confidence 4555433332 2211 2333211122456789999997 57999877665 588877332111111 00011100
Q ss_pred cC--ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-C-----CCCCCCCeEEEeCCCeEEEEeC
Q 020019 198 KN--LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-G-----GPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 198 ~~--~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g-----~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.. ..-..|+.+++.- +|+|-...++.+..++.+.. .+..+.+- | ...+.+.|+++|.+|+||++..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-----~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-----VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCCC-----eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 01 1235689999765 99999889999999999855 44444432 1 2356799999999999999986
Q ss_pred CceEEEEcCC
Q 020019 269 PSARLVESSD 278 (332)
Q Consensus 269 ~~~~~v~~~d 278 (332)
.+...++.++
T Consensus 303 Pnlfy~F~~~ 312 (316)
T COG3204 303 PNLFYRFTPQ 312 (316)
T ss_pred CCcceecccC
Confidence 6545555543
No 49
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.44 E-value=0.00046 Score=65.11 Aligned_cols=257 Identities=16% Similarity=0.196 Sum_probs=133.9
Q ss_pred CCc-cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCcccee-eeEEecc----------cCcCC--CccceEEEeCCC
Q 020019 43 SSF-FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLE-EVTLVKD----------LELTG--NGSLGLVLDHPR 108 (332)
Q Consensus 43 ~~~-~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~-~~~~~~~----------~~~~~--~~~~gi~vd~~~ 108 (332)
+++ +|-+++..++|.+++.....|.+..+....... ..+.. ...+... |.+.. ..+.+++...
T Consensus 64 ~gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~-~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~~-- 140 (399)
T COG2133 64 QGLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSAS-PPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEPG-- 140 (399)
T ss_pred ccccCchhheecCCceEEEEccCCccEEEecCCCccc-ccccccceEEeccCCCccceEecccccccceeeeEEEeec--
Confidence 444 899999999994444445457777776332110 00000 0011110 11110 1345555543
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCc----EEEEEecCCCCCCCCCccceEECCCCcEEEEeC-------------CCC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWN----RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-------------TGS 171 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~----~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-------------~~~ 171 (332)
+.+|++.. ..+.+|+....+ ...+..+ |....++...|+++|||.|||+-- ..|
T Consensus 141 ~~~~~~n~-------~~~~~~~~g~~~l~~~~~i~~~l--P~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~G 211 (399)
T COG2133 141 GGLYVANR-------VAIGRLPGGDTKLSEPKVIFRGI--PKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAG 211 (399)
T ss_pred CCceEEEE-------EEEEEcCCCccccccccEEeecC--CCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcccccc
Confidence 45566543 234556521111 2223345 332357889999999999999742 235
Q ss_pred eEEEEcCCCceEEEecCCCCC-CcccccCccccCeEEEccC-ceEEEEeCCCCeE------EEE--------eCCC----
Q 020019 172 KIWKVGVKGEFLSIISSPLFT-PKEWYKNLVGLNGIVYHPD-GFLIVIHTFSGNL------FKI--------DIVD---- 231 (332)
Q Consensus 172 ~I~~v~~~g~~~~~~~~~~~~-~p~~~~~~~~~nGi~~~~d-G~Lyva~~~~~~i------~~i--------d~~~---- 231 (332)
.|++++.++.... +..+. ...+..+.-++.|++|+|. |.||+++.+...+ -++ ....
T Consensus 212 k~~r~~~a~~~~~---d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~ 288 (399)
T COG2133 212 KVLRIDRAGIIPA---DNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQN 288 (399)
T ss_pred ceeeeccCccccc---CCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcc
Confidence 6667666654321 11222 1223446778999999999 6999999876222 111 1111
Q ss_pred --CCC--ccceeEEEEecC---CCCCCCCeEEEeCC-------CeEEEEeCCceEEE-EcCCCceEEEEEeeecCCCccc
Q 020019 232 --GVG--EGEEIKLIRVAG---GPLSFGDGLELLSP-------TKLVVAGNPSARLV-ESSDGWETAAVVAKFSGPVHRL 296 (332)
Q Consensus 232 --~~~--~~~~~~~v~~~g---~~~~~pdGi~~~~d-------G~l~va~~~~~~~v-~~~dg~~~~~~~~~~~~~~~~~ 296 (332)
+.. ++........+. ++...|.||++-.. |.++|+...+-.++ ..++|-..-.+...+..+....
T Consensus 289 ~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR 368 (399)
T COG2133 289 YDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGR 368 (399)
T ss_pred cCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCc
Confidence 000 000000000000 12245789999743 78999986653232 3344522223344444222356
Q ss_pred ceEEEE-ECCeEEEEEecC
Q 020019 297 ATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 297 pt~va~-~~g~lyv~~~~g 314 (332)
|-.|++ .+|-|||+...+
T Consensus 369 ~~dV~v~~DGallv~~D~~ 387 (399)
T COG2133 369 PRDVAVAPDGALLVLTDQG 387 (399)
T ss_pred ccceEECCCCeEEEeecCC
Confidence 888999 899999977665
No 50
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.40 E-value=5.9e-06 Score=77.07 Aligned_cols=112 Identities=26% Similarity=0.446 Sum_probs=69.9
Q ss_pred CccceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCCCCcccccCccccCeEEEccC----ceEEEEeCCC----
Q 020019 151 CADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLFTPKEWYKNLVGLNGIVYHPD----GFLIVIHTFS---- 221 (332)
Q Consensus 151 ~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~~~nGi~~~~d----G~Lyva~~~~---- 221 (332)
.|..|++.|||++||++. .|.|++++.+|.. ..+...+.. ......++.||+++|+ ++||++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v----~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEV----FADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTT----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccc----cccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 577899999999999998 8999999988775 333222111 1124567899999995 7899887743
Q ss_pred ----CeEEEEeCCCCCCc-cceeEEEE-ecC--CCCCCCCeEEEeCCCeEEEEe
Q 020019 222 ----GNLFKIDIVDGVGE-GEEIKLIR-VAG--GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 222 ----~~i~~id~~~~~~~-~~~~~~v~-~~g--~~~~~pdGi~~~~dG~l~va~ 267 (332)
.+|.|+..+.+... +.....+. .+. ...-...+|++++||.|||+.
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~ 131 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSV 131 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEE
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEe
Confidence 57888887644110 11111111 121 111123579999999999994
No 51
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.0006 Score=66.29 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=92.9
Q ss_pred ceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.+.|+|||+.+ |++.. ..+|+.++..+++. . .+...++ .....+++|+...|+++.... +...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-----~--~lt~~~g----~~~~~~wSPDG~~La~~~~~~---g~~~ 287 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-----E--KVTSFPG----INGAPRFSPDGKKLALVLSKD---GQPE 287 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCe-----E--EecCCCC----CcCCeeECCCCCEEEEEEeCC---CCeE
Confidence 68999999855 44433 34699999877652 1 2221121 223568888744465543221 2356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
|+.+|.++++....... .......++.|||+ |+++.. +...||+++.+ |+..++.... .
T Consensus 288 Iy~~dl~tg~~~~lt~~------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-----------~ 350 (448)
T PRK04792 288 IYVVDIATKALTRITRH------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-----------E 350 (448)
T ss_pred EEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-----------C
Confidence 99999988876432211 12345578899986 655543 34689999976 4443331111 1
Q ss_pred ccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDG 232 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~ 232 (332)
...+.+++||| .||++....+ +|++++++++
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 12356899999 8888765443 6889998876
No 52
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00039 Score=67.31 Aligned_cols=180 Identities=8% Similarity=0.048 Sum_probs=104.8
Q ss_pred cceEEcCCCCE-EEEEe--cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRR-FIVSF--LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~-~~~~~--~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+.|+|||+. +|++. ....|+.++..+++. + .+...++ ......+.|+..+|+++.... +..
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~--~l~~~~g----~~~~~~~SPDG~~la~~~~~~---g~~ 270 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----E--LVGNFPG----MTFAPRFSPDGRKVVMSLSQG---GNT 270 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----E--EeecCCC----cccCcEECCCCCEEEEEEecC---CCc
Confidence 45889999984 45543 246899999887652 1 2221122 234667888733454443211 235
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.|+.+|.++++....... ........+.|||+ |+++.. +...||+++.++...+.+.... .
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~------~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~----------~ 334 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDS------PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG----------G 334 (435)
T ss_pred eEEEEECCCCceEEccCC------CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC----------C
Confidence 689999988776432211 12344578999986 655432 3458999998765333221110 1
Q ss_pred ccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEE
Q 020019 202 GLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va 266 (332)
......|+||| .|++..... .+|+.++++++ ..+.+... .......+.+||+ |+++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-----~~~~lt~~----~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-----GERILTSG----FLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-----ceEeccCC----CCCCCCeECCCCCEEEEE
Confidence 23457899999 887766543 47888888754 23333211 1245677888877 3443
No 53
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.26 E-value=0.00036 Score=68.96 Aligned_cols=183 Identities=19% Similarity=0.265 Sum_probs=114.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++++|||++..+...+|+|-.|+...+-+ .+++-+ +. .++.++.+... |+..++..= .+.
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC------~vTFte-Ht---s~Vt~v~f~~~-g~~llssSL-----DGt 415 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC------FVTFTE-HT---SGVTAVQFTAR-GNVLLSSSL-----DGT 415 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceE------EEEecc-CC---CceEEEEEEec-CCEEEEeec-----CCe
Confidence 445799999999888888899999999877654 124432 22 26788999885 776666531 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-CCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-GSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||++...--+.+.. |. ......+++||.|.+.++-.. .=.|+..+.. |+.+-.+... +.| .
T Consensus 416 VRAwDlkRYrNfRTft~--P~--p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH--EgP--------V 481 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTS--PE--PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH--EGP--------V 481 (893)
T ss_pred EEeeeecccceeeeecC--CC--ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC--CCc--------c
Confidence 88999976543333333 32 244667999999988776544 3467777754 7766544211 122 3
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeC--CCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDI--VDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~--~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
.|++++++|.+.++-+=..+|..++. ..+ .++.++.. .-.-++++.|||+ |-|+.
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-----~vEtl~i~----sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-----TVETLEIR----SDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCc-----eeeeEeec----cceeEEEEcCCCCeEEEEE
Confidence 68999999944444444455544444 333 45555543 1223566667755 66664
No 54
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.26 E-value=8.6e-06 Score=60.37 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=52.9
Q ss_pred ceEEEeCCCCeEEEEEeCcC------------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE
Q 020019 100 LGLVLDHPRNRLLVVAADVF------------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT 166 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~------------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt 166 (332)
+++.+++++|.+|+++.... +...++|..||+++++.....+ +..+|||+++.+|+. ++|+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~------~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD------GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE------EESSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh------CCCccCeEEEcCCCCEEEEE
Confidence 46888886699999986421 1457899999999987654332 247999999999986 9999
Q ss_pred eCCCCeEEEEcCCC
Q 020019 167 DVTGSKIWKVGVKG 180 (332)
Q Consensus 167 d~~~~~I~~v~~~g 180 (332)
++...+|.|+-.+|
T Consensus 75 Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 75 ETGRYRILRYWLKG 88 (89)
T ss_dssp EGGGTEEEEEESSS
T ss_pred eccCceEEEEEEeC
Confidence 99999999986655
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.0021 Score=57.65 Aligned_cols=204 Identities=13% Similarity=0.156 Sum_probs=128.0
Q ss_pred CCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 43 SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
..-.++.+.++++|..++++..+..|..+|..+++. ...+..... ++.-+.+......+.-+..- .
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-------~~ti~skky---G~~~~~Fth~~~~~i~sStk----~ 78 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKY---GVDLACFTHHSNTVIHSSTK----E 78 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-------eeEeecccc---cccEEEEecCCceEEEccCC----C
Confidence 344788999999999888887778999999877762 122322222 33333433333554444331 1
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~ 201 (332)
...|..+++.+++.++.+ ++. ....+.+.+.|-++.+++-+....|.-.|..-+ -...+.. .
T Consensus 79 d~tIryLsl~dNkylRYF--~GH---~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------~ 141 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYF--PGH---KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------S 141 (311)
T ss_pred CCceEEEEeecCceEEEc--CCC---CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------C
Confidence 234666777777776543 221 357888999999899999998888877776522 1211211 2
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeCCc-eEEEEcCCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGNPS-ARLVESSDG 279 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~~~-~~~v~~~dg 279 (332)
++.-+|+||+|.++++-.+++.|--+|+..-.. .+.+.+.........-.+|.+.+||+ |.++.+.+ ..++...+|
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 234679999997777777777787778763100 14444544322345667999999999 44444443 455677888
No 56
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.25 E-value=0.00064 Score=61.72 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=120.5
Q ss_pred eEEcCCCCEEEEE---e--cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCC-eEEEEEeCcCC---
Q 020019 50 AKWDDSGRRFIVS---F--LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRN-RLLVVAADVFG--- 120 (332)
Q Consensus 50 ia~d~~g~~~~~~---~--~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g-~l~v~~~~~~~--- 120 (332)
-+|++||+++|+. . ..|.|.++|... .+ + ..-+.++ .|.+|.-|.+.++ | +|.|++.+...
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~-----~--ri~E~~s-~GIGPHel~l~pD-G~tLvVANGGI~Thpd 125 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GY-----R--RIGEFPS-HGIGPHELLLMPD-GETLVVANGGIETHPD 125 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC-Cc-----E--EEeEecC-CCcChhhEEEcCC-CCEEEEEcCCCccCcc
Confidence 5688999998886 2 246799999873 32 1 1221222 3568999999997 6 88888765321
Q ss_pred ---Cc------cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-------CCeEEEEcCCCceEE
Q 020019 121 ---NK------YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-------GSKIWKVGVKGEFLS 184 (332)
Q Consensus 121 ---~~------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-------~~~I~~v~~~g~~~~ 184 (332)
.+ ...|..+|..+|++.....++. ...+.....++++++|.+++..-. ..-|..++.++.. +
T Consensus 126 ~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~ 203 (305)
T PF07433_consen 126 SGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-R 203 (305)
T ss_pred cCceecChhhcCCceEEEecCCCceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-e
Confidence 01 1357778999999887777742 223467889999999999987432 2345555555432 2
Q ss_pred EecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE
Q 020019 185 IISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL 263 (332)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l 263 (332)
.+..+ .+.+..-....-.|+++++| .+.++....+++..+|..++. .+..+. +.-.-|++..+++ +
T Consensus 204 ~~~~p---~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~----~~~~~~-----l~D~cGva~~~~~-f 270 (305)
T PF07433_consen 204 LLPAP---EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR----LLGSVP-----LPDACGVAPTDDG-F 270 (305)
T ss_pred eccCC---hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC----Eeeccc-----cCceeeeeecCCc-e
Confidence 21111 00011122345679999999 788888889999999988872 233222 2233467666666 3
Q ss_pred EEEe
Q 020019 264 VVAG 267 (332)
Q Consensus 264 ~va~ 267 (332)
.++.
T Consensus 271 ~~ss 274 (305)
T PF07433_consen 271 LVSS 274 (305)
T ss_pred EEeC
Confidence 4443
No 57
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.17 E-value=0.00048 Score=62.31 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=101.1
Q ss_pred EEEEEecCCeEEEEECC-CCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE---EC--
Q 020019 58 RFIVSFLDGGIGQVAVP-DDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY---DL-- 131 (332)
Q Consensus 58 ~~~~~~~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~---d~-- 131 (332)
+.++....|++..+..+ ++.. .+... .+ ..+.||++++ ++||++.. ..|+.| +-
T Consensus 20 la~sTYQagkL~~ig~~~~g~l--------~~~~r-~F--~r~MGl~~~~--~~l~~~t~-------~qiw~f~~~~n~l 79 (335)
T TIGR03032 20 LAVTTYQAGKLFFIGLQPNGEL--------DVFER-TF--PRPMGLAVSP--QSLTLGTR-------YQLWRFANVDNLL 79 (335)
T ss_pred EEEEeeecceEEEEEeCCCCcE--------EEEee-cc--CccceeeeeC--CeEEEEEc-------ceeEEcccccccc
Confidence 44555667887777544 3332 12111 12 2678999987 68999875 346655 21
Q ss_pred CCCcE-----EEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCC---Ccc--------
Q 020019 132 STWNR-----LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFT---PKE-------- 195 (332)
Q Consensus 132 ~~g~~-----~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~---~p~-------- 195 (332)
..++. ...++-.....+.-..+||++ .++.+|+.++.-.++-.++++-.+...+.. .|. .|+
T Consensus 80 ~~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkP-pFIs~la~eDRCHLNGl 157 (335)
T TIGR03032 80 PAGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKP-PFISKLAPEDRCHLNGM 157 (335)
T ss_pred cccccCCCCCeEEeeeeeeeccCcchhheee-cCCcEEEEECcceeEEEECCCCccccccCC-ccccccCccCceeecce
Confidence 11111 001110000112346788999 566899999988888888777544432211 111 010
Q ss_pred ----------------------------------------cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCc
Q 020019 196 ----------------------------------------WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGE 235 (332)
Q Consensus 196 ----------------------------------------~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~ 235 (332)
...++.-|.+--|. +|.||+.|+.++++.++|+++|+
T Consensus 158 A~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~-- 234 (335)
T TIGR03032 158 ALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGK-- 234 (335)
T ss_pred eeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCc--
Confidence 01233334444454 67899999999999999998773
Q ss_pred cceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 236 GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 236 ~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
......++ +.|.||.+. |.+.+..
T Consensus 235 --~e~Va~vp----G~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 235 --FQPVAFLP----GFTRGLAFA--GDFAFVG 258 (335)
T ss_pred --EEEEEECC----CCCccccee--CCEEEEE
Confidence 23333444 478899998 6766665
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0035 Score=56.23 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.++.|.+.|. +..++... ....+..||++..+-.-...+. .+.-.|+||+|-++..-.....|.-+|
T Consensus 102 ~V~sL~~sP~-~d~FlS~S-----~D~tvrLWDlR~~~cqg~l~~~-------~~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 102 RVNSLSVSPK-DDTFLSSS-----LDKTVRLWDLRVKKCQGLLNLS-------GRPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred eEEEEEecCC-CCeEEecc-----cCCeEEeeEecCCCCceEEecC-------CCcceeECCCCcEEEEecCCCeEEEEE
Confidence 5788999997 56677653 1346888999854433333332 233489999996666666666777777
Q ss_pred CC----CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 178 VK----GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 178 ~~----g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
.. |-...+.-.. +....-+.|.|++|| .|.++ +..+.++.+|.-+|. ....+...-.....|
T Consensus 169 ~Rs~dkgPF~tf~i~~--------~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITD--------NDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGT----VKSTFSGYPNAGNLP 235 (311)
T ss_pred ecccCCCCceeEccCC--------CCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCc----EeeeEeeccCCCCcc
Confidence 43 2222221100 123456899999999 66666 456778999988773 455555431233456
Q ss_pred CeEEEeCCCeEEEEeCC--ceEEEEcCCC
Q 020019 253 DGLELLSPTKLVVAGNP--SARLVESSDG 279 (332)
Q Consensus 253 dGi~~~~dG~l~va~~~--~~~~v~~~dg 279 (332)
-+.++.||++.++++.. ...+-...+|
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 67788899998888643 2333345666
No 59
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.14 E-value=0.0025 Score=55.61 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=135.8
Q ss_pred eeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 36 HVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 36 ~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
.++.|.+.......+.|..+|++.|++..+|.+-.+|...-.. + +.+. .+ ..++.+.++|+.+.|++++
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-----q-R~~~-~~----spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-----Q-RNYQ-HN----SPVNTVVLHPNQTELISGD 143 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-----c-hhcc-CC----CCcceEEecCCcceEEeec
Confidence 4555666544556788999999889888889888887654321 2 1222 22 1468899999888999998
Q ss_pred eCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-c-eEEEecCCCCCC
Q 020019 116 ADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-E-FLSIISSPLFTP 193 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~-~~~~~~~~~~~~ 193 (332)
+ .+.|.+||+....-. .++- |. ...+..-+++++||...++-...|..|..+.-+ . ...+.....++.
T Consensus 144 q------sg~irvWDl~~~~c~--~~li-Pe-~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 144 Q------SGNIRVWDLGENSCT--HELI-PE-DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred C------CCcEEEEEccCCccc--cccC-CC-CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 6 357999999765322 1221 22 246778899999998777666666655554332 1 111111111211
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--e
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--A 271 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~ 271 (332)
.....--+.++||+...++......+..++.++- . ..+ ..+.| .-.=..+.+|..||+.+|+.... .
T Consensus 214 -----h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~---kle-~~l~g-h~rWvWdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 214 -----HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F---KLE-LVLTG-HQRWVWDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred -----ccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e---eeE-EEeec-CCceEEeeeeccCccEEEecCCCCce
Confidence 1123345679999977777777777776766643 1 111 22222 11235678899999988886432 2
Q ss_pred EEEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 272 RLVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 272 ~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
++-....+ +..... .+.++.+++++.
T Consensus 283 rlW~~~~~----k~v~qy-~gh~K~~vc~~l 308 (311)
T KOG0315|consen 283 RLWDLSAG----KEVRQY-QGHHKAAVCVAL 308 (311)
T ss_pred eecccccC----ceeeec-CCcccccEEEEe
Confidence 32234444 222222 233556677765
No 60
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0031 Score=60.76 Aligned_cols=177 Identities=10% Similarity=0.059 Sum_probs=102.1
Q ss_pred ceEEcCCCC--EEEEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 49 CAKWDDSGR--RFIVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 49 gia~d~~g~--~~~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+.|+|+|+ +||++.. ...||+++..+++. + .+...++ ......+.||..+|.+..... +..
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----~--~lt~~~g----~~~~~~~SPDG~~la~~~~~~---g~~ 257 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----E--KIASSQG----MLVVSDVSKDGSKLLLTMAPK---GQP 257 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----E--EEecCCC----cEEeeEECCCCCEEEEEEccC---CCc
Confidence 678999997 4555643 46799999987752 1 3332222 122345788633555543221 245
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCCCc-eEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+.+|.++++.......+ ..-....+.|||+ ||++.. +...||+++.++. ..++....
T Consensus 258 ~Iy~~dl~~g~~~~LT~~~------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g----------- 320 (419)
T PRK04043 258 DIYLYDTNTKTLTQITNYP------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG----------- 320 (419)
T ss_pred EEEEEECCCCcEEEcccCC------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-----------
Confidence 7999999887754432221 1122347899995 776643 3458999998854 43332111
Q ss_pred cccCeEEEccCc-eEEEEeCCC--------CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--------GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--------~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
..+ ..++||| .|.++.... .+|+.++++++ ..+.+... .. -....+.|||+ |+++.
T Consensus 321 -~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-----~~~~LT~~--~~--~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 321 -KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-----YIRRLTAN--GV--NQFPRFSSDGGSIMFIK 386 (419)
T ss_pred -CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC-----CeEECCCC--CC--cCCeEECCCCCEEEEEE
Confidence 012 4899999 665555432 47999999876 33333222 11 11356888876 54553
No 61
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.0046 Score=59.82 Aligned_cols=179 Identities=13% Similarity=0.171 Sum_probs=104.0
Q ss_pred cceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..++|+|||+.+ |++.. ...|+.++..+++. + .+...++ ......++|+..+|+++.... +..
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-----~--~l~~~~~----~~~~~~~SPDG~~La~~~~~~---g~~ 267 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----R--QVASFPR----HNGAPAFSPDGSKLAFALSKT---GSL 267 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-----E--EccCCCC----CcCCeEECCCCCEEEEEEcCC---CCc
Confidence 468999999855 44432 35799999876652 1 2222222 233578899733455543211 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EE-EEeC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AY-VTDV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-ly-vtd~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+.+|.++++......- ........+.|||+ |+ .++. +...||+++.++. ..++....
T Consensus 268 ~I~~~d~~tg~~~~lt~~------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~----------- 330 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDG------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG----------- 330 (429)
T ss_pred EEEEEECCCCCEEEccCC------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-----------
Confidence 699999998876533211 12345689999996 54 4443 3458999998754 33321110
Q ss_pred cccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
......+++||| .|+++.... ..|+.++++++ ..+.+... .. -....+.+||+.++.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-----~~~~Lt~~--~~--~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-----GVQVLTDT--FL--DETPSIAPNGTMVIY 390 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCC-----CeEEeCCC--CC--CCCceECCCCCEEEE
Confidence 122467899999 777665543 45888998876 33333311 11 123467888874433
No 62
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.0016 Score=63.03 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=102.8
Q ss_pred cceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.+++|+|||+.+ |++.. ...|++++..+++. + .+...++ ......++++..+|+++.... +..
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----~--~l~~~~g----~~~~~~~SpDG~~l~~~~s~~---g~~ 272 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----E--LVASFRG----INGAPSFSPDGRRLALTLSRD---GNP 272 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----E--EeccCCC----CccCceECCCCCEEEEEEeCC---CCc
Confidence 467899999844 45432 34799999876652 1 2221122 223568888733455443211 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCCC-ceEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+++|+++++....... .......++.|||+ ++++ +. +...||.++.++ +..++....
T Consensus 273 ~Iy~~d~~~g~~~~lt~~------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g----------- 335 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNH------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG----------- 335 (433)
T ss_pred eEEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-----------
Confidence 699999998875432211 12234578999986 5554 32 245799998764 433322111
Q ss_pred cccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va 266 (332)
......+++||| .|+++...+ .+|+.+++.++ ..+.+. .+ . ......+.+||+ ++++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-----~~~~Lt-~~-~--~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-----SVRTLT-PG-S--LDESPSFAPNGSMVLYA 396 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC-----CeEECC-CC-C--CCCCceECCCCCEEEEE
Confidence 112357999999 888775543 36888998866 233232 21 1 122357888887 3444
No 63
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.00018 Score=71.05 Aligned_cols=139 Identities=13% Similarity=-0.008 Sum_probs=86.7
Q ss_pred ceEEEEECCC----C-cEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCC--Ccc
Q 020019 124 SAVAAYDLST----W-NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFT--PKE 195 (332)
Q Consensus 124 ~~l~~~d~~~----g-~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~--~p~ 195 (332)
+++.++|.++ + ++...+.. ..+|.|++++|||+ +|++....+.|..+|.......+.+.-.+. .-.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 3466777766 2 34443433 36899999999996 899999999999999763211110000000 000
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC----CCc--cceeEEEEecC--CCCCCCCeEEEeCCCeEEEEe
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG----VGE--GEEIKLIRVAG--GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~----~~~--~~~~~~v~~~g--~~~~~pdGi~~~~dG~l~va~ 267 (332)
..+-..+|-..+|+++|+.|++-...++|.++++++. +.+ ...+..+.+.- .++..+-|=..++||+.+++-
T Consensus 370 evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 370 EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred eeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 1123457889999999999999999999999998751 000 01233333310 123345566678999988885
Q ss_pred C
Q 020019 268 N 268 (332)
Q Consensus 268 ~ 268 (332)
|
T Consensus 450 n 450 (635)
T PRK02888 450 N 450 (635)
T ss_pred c
Confidence 4
No 64
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.07 E-value=0.003 Score=61.12 Aligned_cols=176 Identities=13% Similarity=0.208 Sum_probs=102.6
Q ss_pred ccceEEcCCCCEEE-EEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 47 RECAKWDDSGRRFI-VSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 47 pegia~d~~g~~~~-~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
...+.|+|||+.++ ++.. ..+|+.++..+++. + .+...++ ....+++.|+..+|+++.... +.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----~--~l~~~~g----~~~~~~wSPDG~~La~~~~~~---g~ 271 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----K--VVASFRG----HNGAPAFSPDGSRLAFASSKD---GV 271 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----E--EEecCCC----ccCceeECCCCCEEEEEEecC---Cc
Confidence 35689999998554 4432 24799999876642 1 2221121 223578899733455543211 22
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
..|+.+|.++++...... ........++.|||+ |+++.. +...||.++.++.....+..
T Consensus 272 ~~Iy~~d~~~~~~~~lt~------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~------------ 333 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTS------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG------------ 333 (429)
T ss_pred EEEEEEECCCCCeEeecc------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC------------
Confidence 358888988776543221 122345689999996 665532 45689999887653333211
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
.+ ....++||| .|+++.. ..++++|+.+++ .+.+. . .. .-....+.|||++++.
T Consensus 334 ~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~-----~~~lt-~--~~-~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 334 RG-YSAQISADGKTLVMING--DNVVKQDLTSGS-----TEVLS-S--TF-LDESPSISPNGIMIIY 388 (429)
T ss_pred CC-CCccCCCCCCEEEEEcC--CCEEEEECCCCC-----eEEec-C--CC-CCCCceECCCCCEEEE
Confidence 01 246789999 7777644 568889988762 22222 1 11 1134668899875555
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.07 E-value=0.0032 Score=60.15 Aligned_cols=162 Identities=15% Similarity=0.224 Sum_probs=86.7
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCC--Cc----cceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKS--CA----DDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~--~~----ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
+.++.+|.++|+..+..++..+..... .. ...++. +|.+|++.. .+.++.+|+. |+. .+- .+ +.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~-~g~l~ald~~tG~~-~W~-~~-~~---- 285 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV-GGVVYALAY-NGNLVALDLRSGQI-VWK-RE-YG---- 285 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE-CCEEEEEEc-CCeEEEEECCCCCE-EEe-ec-CC----
Confidence 467888999998776655432211000 01 112222 467898764 5889999976 553 332 11 11
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEE-EE-ecCCCCCCCCeEEEeCCCeEEEEeCCc-eEE
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKL-IR-VAGGPLSFGDGLELLSPTKLVVAGNPS-ARL 273 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~-v~-~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~ 273 (332)
.+..++.. +++||+... .++++.+++++++ +.. .. ..+.....| ++ .+|.||+.+... ...
T Consensus 286 -----~~~~~~~~-~~~vy~~~~-~g~l~ald~~tG~-----~~W~~~~~~~~~~~sp---~v-~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 286 -----SVNDFAVD-GGRIYLVDQ-NDRVYALDTRGGV-----ELWSQSDLLHRLLTAP---VL-YNGYLVVGDSEGYLHW 349 (394)
T ss_pred -----CccCcEEE-CCEEEEEcC-CCeEEEEECCCCc-----EEEcccccCCCcccCC---EE-ECCEEEEEeCCCEEEE
Confidence 12234443 569999874 6789999998872 211 11 111111222 23 368999997654 333
Q ss_pred EEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEecC
Q 020019 274 VESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHMLG 314 (332)
Q Consensus 274 v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~~g 314 (332)
+...+| +++.......-....+..+.+++|||..+-|
T Consensus 350 ld~~tG----~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G 386 (394)
T PRK11138 350 INREDG----RFVAQQKVDSSGFLSEPVVADDKLLIQARDG 386 (394)
T ss_pred EECCCC----CEEEEEEcCCCcceeCCEEECCEEEEEeCCc
Confidence 455667 3332222111112233445788999976655
No 66
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.06 E-value=0.0085 Score=54.10 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=136.2
Q ss_pred ccccceEEcCCCCEEEEEecCCe--EEEEECCCCC-CCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCC
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGG--IGQVAVPDDY-PPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~--I~~vd~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
..|.||++.|.+-+|+++-.++. +|-..+++.. .+ +.+. +++...++.. ...|.|+.++.. .. |++......
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-~~L~-vtiP~~~~~~~~~~PTGiVfN~~-~~-F~vt~~g~~ 98 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-DPLV-VVIPAPPPLAAEGTPTGQVFNGS-DT-FVVSGEGIT 98 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCc-cceE-EEecCCCCCCCCCCccEEEEeCC-Cc-eEEcCCCcc
Confidence 38899999999999998855554 4544433211 00 0111 1222112211 135888888864 22 433321100
Q ss_pred --------CccceEEEEECCCCcE---EEEEecCCCCCCCCCccceEECCC--C-cEEEEeCCCCeEEEEcCCCceEEEe
Q 020019 121 --------NKYSAVAAYDLSTWNR---LFLTQLSGPSDGKSCADDVTVDAE--G-NAYVTDVTGSKIWKVGVKGEFLSII 186 (332)
Q Consensus 121 --------~~~~~l~~~d~~~g~~---~~~~~l~~~~~~~~~~ndiavd~d--G-~lyvtd~~~~~I~~v~~~g~~~~~~ 186 (332)
.+.+.|..|.+.-+.. ...+.+.. ......-.++|+... + .||.+|..+++|-++|..=+....
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~- 176 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL- 176 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-
Confidence 1234455555432211 11122211 112345567777754 3 499999999999999765332221
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCC-------------CCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF-------------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~-------------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
...|..|. .|....|-+|.-- +++|||+-.. .+.|-.++++.. .++++... ..+..|.
T Consensus 177 -~g~F~DP~-iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----l~~r~as~-g~LNaPW 247 (336)
T TIGR03118 177 -PGSFIDPA-LPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----LLRRVASS-GRLNAPW 247 (336)
T ss_pred -CCCccCCC-CCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----EEEEeccC-CcccCCc
Confidence 23454442 3456678888653 5699987542 346677777743 67777655 5789999
Q ss_pred eEEEeC------CCeEEEEeCCceEE-EEc-CCCceEEEEEeeecCC-CcccceEEEE-E------CCeEEEEEe
Q 020019 254 GLELLS------PTKLVVAGNPSARL-VES-SDGWETAAVVAKFSGP-VHRLATAATV-K------DGRVYLNHM 312 (332)
Q Consensus 254 Gi~~~~------dG~l~va~~~~~~~-v~~-~dg~~~~~~~~~~~~~-~~~~pt~va~-~------~g~lyv~~~ 312 (332)
||++.| .|.|+|.+....++ .+. .+|.-.+.+...-..| ..+.-.++++ . -++||.++-
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAG 322 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAG 322 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeC
Confidence 999963 47899998654332 233 3463334443211000 0112245676 2 148888665
No 67
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.05 E-value=0.00054 Score=62.19 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=98.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC----CCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV----TGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~----~~~~ 172 (332)
...+++++|.+.. .|+.... +...+.+||.++|+......- .++..|-..-++.+||+ ||.|+. +.|.
T Consensus 6 RgH~~a~~p~~~~-avafaRR---PG~~~~v~D~~~g~~~~~~~a---~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPE-AVAFARR---PGTFALVFDCRTGQLLQRLWA---PPGRHFYGHGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCe-EEEEEeC---CCcEEEEEEcCCCceeeEEcC---CCCCEEecCEEEcCCCCEEEEeccccCCCcEE
Confidence 4578899996444 4444332 234678899999998765433 23457777889999997 777753 4678
Q ss_pred EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC------C-----------CeEEEEeCCCCCC
Q 020019 173 IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF------S-----------GNLFKIDIVDGVG 234 (332)
Q Consensus 173 I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~------~-----------~~i~~id~~~~~~ 234 (332)
|-++|....+.++-+-+. ...+|.-|.+.||| +|.|++-+ + ..|..+|..+|
T Consensus 79 IgVyd~~~~~~ri~E~~s--------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-- 148 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPS--------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-- 148 (305)
T ss_pred EEEEECcCCcEEEeEecC--------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC--
Confidence 888988755555433222 34678899999999 99999874 1 12333444444
Q ss_pred ccceeEEEEecC-CCCCCCCeEEEeCCCeEEEEe
Q 020019 235 EGEEIKLIRVAG-GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 235 ~~~~~~~v~~~g-~~~~~pdGi~~~~dG~l~va~ 267 (332)
+.+..+.++. -...+.--|+++++|.++++.
T Consensus 149 --~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 149 --ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred --ceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 2344444431 011346688999999999995
No 68
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.0049 Score=59.56 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=101.8
Q ss_pred ceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.++|+|||+.+ |++.. ...|+.++..+++. . .+...++ .....++.|+..+|+++.... +...
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----~--~l~~~~g----~~~~~~~SPDG~~la~~~~~~---g~~~ 265 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----R--VVANFKG----SNSAPAWSPDGRTLAVALSRD---GNSQ 265 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----E--EeecCCC----CccceEECCCCCEEEEEEccC---CCce
Confidence 57899999855 44432 34699999887652 1 2221122 234678899733555443221 2356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCcc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~ 201 (332)
|+.+|.++++... +.. . ........+.|||+ ++++ +. +...||.++.++. ..++.... .
T Consensus 266 Iy~~d~~~~~~~~---lt~-~--~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-----------~ 328 (427)
T PRK02889 266 IYTVNADGSGLRR---LTQ-S--SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-----------S 328 (427)
T ss_pred EEEEECCCCCcEE---CCC-C--CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-----------C
Confidence 8888987766432 211 1 12234578999996 5544 42 3568999987643 33322111 0
Q ss_pred ccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
......++||| .|+++....+ +|+.+++.++ ..+.+... . ......+.+||+ |+++.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-----~~~~lt~~--~--~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-----QVTALTDT--T--RDESPSFAPNGRYILYAT 389 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC-----CeEEccCC--C--CccCceECCCCCEEEEEE
Confidence 12246899999 7776654433 6899998876 23333211 1 123467888876 44443
No 69
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0094 Score=57.99 Aligned_cols=141 Identities=14% Similarity=0.224 Sum_probs=82.7
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEEE
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKV 176 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v 176 (332)
....++|+..+|+++.... +...|+++|+++++......+. ......++.|||+ |+++... ...||.+
T Consensus 221 ~~p~wSPDG~~La~~s~~~---g~~~L~~~dl~tg~~~~lt~~~------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFEN---RKAEIFVQDIYTQVREKVTSFP------GINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cCceECCCCCEEEEEEecC---CCcEEEEEECCCCCeEEecCCC------CCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 4568888733454443321 2357999999988765433331 1223578999996 7665333 3469999
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
+.++.....+.... ......+|+||| .|+++... ..+||+++++++ ..+.+...+ ....
T Consensus 292 dl~tg~~~~lt~~~----------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-----~~~~Lt~~g---~~~~ 353 (448)
T PRK04792 292 DIATKALTRITRHR----------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-----KVSRLTFEG---EQNL 353 (448)
T ss_pred ECCCCCeEECccCC----------CCccceEECCCCCEEEEEECCCCCceEEEEECCCC-----CEEEEecCC---CCCc
Confidence 98754332221110 123456899999 77766543 357999999876 334343332 1123
Q ss_pred eEEEeCCCe-EEEEe
Q 020019 254 GLELLSPTK-LVVAG 267 (332)
Q Consensus 254 Gi~~~~dG~-l~va~ 267 (332)
+.++.+||+ |+++.
T Consensus 354 ~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 354 GGSITPDGRSMIMVN 368 (448)
T ss_pred CeeECCCCCEEEEEE
Confidence 457888875 55554
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.02 E-value=0.0069 Score=57.31 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=86.3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCC--C----CccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGK--S----CADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~--~----~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
+.+..+|+++|+..+...+..+.... . ......++ ++.+|++.. .+.++.++.+ |+.. +- ....
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~-~g~l~a~d~~tG~~~-W~-~~~~----- 270 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSY-QGRVAALDLRSGRVL-WK-RDAS----- 270 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEc-CCEEEEEECCCCcEE-Ee-eccC-----
Confidence 57889999999887665543221100 0 11122333 467888764 5789999975 5533 21 1110
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEE-EecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEE
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLI-RVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLV 274 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v-~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v 274 (332)
.....+++ ++++|+.. .+++|+.++..+++ .+-.. ...+.....| .+ .++.||+.+... ...+
T Consensus 271 -----~~~~p~~~-~~~vyv~~-~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp---~i-~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 271 -----SYQGPAVD-DNRLYVTD-ADGVVVALDRRSGS----ELWKNDELKYRQLTAP---AV-VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred -----CccCceEe-CCEEEEEC-CCCeEEEEECCCCc----EEEccccccCCccccC---EE-ECCEEEEEeCCCEEEEE
Confidence 11233443 56899885 56889999998772 22111 1121112223 23 357888887443 3334
Q ss_pred EcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEecC
Q 020019 275 ESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHMLG 314 (332)
Q Consensus 275 ~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~~g 314 (332)
...+| +++.....+.-....+.++.+++|||..+-|
T Consensus 336 d~~tG----~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG 371 (377)
T TIGR03300 336 SREDG----SFVARLKTDGSGIASPPVVVGDGLLVQTRDG 371 (377)
T ss_pred ECCCC----CEEEEEEcCCCccccCCEEECCEEEEEeCCc
Confidence 45556 3333332111112233455778899976654
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.00 E-value=0.0081 Score=57.50 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=102.1
Q ss_pred cceEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVS-FL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..++|+++|+.++.. .. ...|+.++..+++. . .+....+ ....+++.++...++++.... +..
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~--~~~~~~~----~~~~~~~spDg~~l~~~~~~~---~~~ 258 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----E--KVASFPG----MNGAPAFSPDGSKLAVSLSKD---GNP 258 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----E--EeecCCC----CccceEECCCCCEEEEEECCC---CCc
Confidence 346799999865443 32 25799999876652 1 2221111 234578888734566553221 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+.+|+++++....... ........+.+||+ |+++ +. +...||.++.++. ..++....
T Consensus 259 ~i~~~d~~~~~~~~l~~~------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~----------- 321 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNG------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG----------- 321 (417)
T ss_pred cEEEEECCCCCEEECCCC------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-----------
Confidence 689999988765432211 11223457888986 5554 32 3458999998754 33221111
Q ss_pred cccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
......++++|| .|+++.... .+|+.+++.++ ..+.+... .......+.+||+ |+++.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-----~~~~l~~~----~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-----GERVLTDT----GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC-----CeEEccCC----CCCCCceECCCCCEEEEEE
Confidence 123467899999 777776543 37899998865 33333221 1123446778865 54443
No 72
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.99 E-value=0.00092 Score=62.23 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=97.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC--C---cE--EEEEecCCCCC-----CCCCccceEECCCCcEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST--W---NR--LFLTQLSGPSD-----GKSCADDVTVDAEGNAYV 165 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~--g---~~--~~~~~l~~~~~-----~~~~~ndiavd~dG~lyv 165 (332)
+-.||.++++.+++|+..-.........++.++... + .+ .....+..+.. ...-+-+|++.++|.+||
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 567999996558877664322211122345444332 1 11 11223322210 011355899988899999
Q ss_pred EeCCC------CeEEEEcCCCceEEEecCCC-CC-Cc---ccccCccccCeEEEccCc-eEEEEeCCC------------
Q 020019 166 TDVTG------SKIWKVGVKGEFLSIISSPL-FT-PK---EWYKNLVGLNGIVYHPDG-FLIVIHTFS------------ 221 (332)
Q Consensus 166 td~~~------~~I~~v~~~g~~~~~~~~~~-~~-~p---~~~~~~~~~nGi~~~~dG-~Lyva~~~~------------ 221 (332)
++... +.|++++.+|+....+..+. +. .. ...+.-.+.-||++++|| +||++....
T Consensus 101 s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~ 180 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDN 180 (326)
T ss_pred EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccccc
Confidence 99999 99999999998754332121 10 00 112244577899999999 699887643
Q ss_pred ---CeEEEEeCCCCCCccceeEE--EEecC----CCCCCCCeEEEeCCCeEEEEe
Q 020019 222 ---GNLFKIDIVDGVGEGEEIKL--IRVAG----GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 222 ---~~i~~id~~~~~~~~~~~~~--v~~~g----~~~~~pdGi~~~~dG~l~va~ 267 (332)
-+|++++..+.. ..... +.+.. .....+..|+.-++++|+|-+
T Consensus 181 ~~~~ri~~~d~~~~~---~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 181 GSPLRILRYDPKTPG---EPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred CceEEEEEecCCCCC---ccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 467888887531 11222 23320 012456677788899999996
No 73
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.011 Score=57.22 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~ 175 (332)
....++.|+..+|+++.... +...|+.+|+++|+......+. ......++.|||+ |+++-. +...||.
T Consensus 198 v~~p~wSPDG~~la~~s~~~---~~~~I~~~dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFES---KKPVVYVHDLATGRRRVVANFK------GSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred cccceEcCCCCEEEEEEccC---CCcEEEEEECCCCCEEEeecCC------CCccceEECCCCCEEEEEEccCCCceEEE
Confidence 45678888733455444221 2346999999988765443331 1223688999985 666533 3457999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC--CCCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT--FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~--~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.+++....+.... ......+|+||| +|+++.. +..+||++++.++ ..+.+...+ ...
T Consensus 269 ~d~~~~~~~~lt~~~----------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-----~~~~lt~~g---~~~ 330 (427)
T PRK02889 269 VNADGSGLRRLTQSS----------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-----AAQRVTFTG---SYN 330 (427)
T ss_pred EECCCCCcEECCCCC----------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-----ceEEEecCC---CCc
Confidence 988755333221111 112356899999 7766543 2447899988765 333343332 112
Q ss_pred CeEEEeCCCeE
Q 020019 253 DGLELLSPTKL 263 (332)
Q Consensus 253 dGi~~~~dG~l 263 (332)
....+.+||+.
T Consensus 331 ~~~~~SpDG~~ 341 (427)
T PRK02889 331 TSPRISPDGKL 341 (427)
T ss_pred CceEECCCCCE
Confidence 24568888764
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0049 Score=59.48 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=102.4
Q ss_pred cceEEcCCCCEE-EEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRF-IVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+.|+|||+.+ |++.. ...|++++..+++. + .+...++ ......+.|+..+|++..... +..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----~--~l~~~~g----~~~~~~~SpDG~~la~~~~~~---g~~ 267 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----E--QITNFEG----LNGAPAWSPDGSKLAFVLSKD---GNP 267 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----E--EccCCCC----CcCCeEECCCCCEEEEEEccC---CCc
Confidence 567899999854 55533 34799999887652 1 2221111 223578888733455443221 234
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEEEcCC-CceEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~ 200 (332)
.|+++|.++++....... ........+.|||+ +|++.. +...||+++.+ |+..++....
T Consensus 268 ~Iy~~d~~~~~~~~lt~~------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~----------- 330 (430)
T PRK00178 268 EIYVMDLASRQLSRVTNH------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG----------- 330 (430)
T ss_pred eEEEEECCCCCeEEcccC------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-----------
Confidence 799999998776432211 12234567899985 666533 34589999876 4443332111
Q ss_pred cccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
.......++||| .|+++....+ .|+.+++.++ ..+.+... .. -....+.+||+.++
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-----~~~~lt~~--~~--~~~p~~spdg~~i~ 389 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-----SVRILTDT--SL--DESPSVAPNGTMLI 389 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCC-----CEEEccCC--CC--CCCceECCCCCEEE
Confidence 112246799999 8888765443 6889998876 23333221 11 12346888877443
No 75
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.97 E-value=0.007 Score=57.76 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=97.2
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
+++|+.+ .++.|+.+|..+++. .|.... .+.......+.. +++|+... .+.|+.+|.++|+
T Consensus 121 ~~v~v~~-~~g~l~ald~~tG~~--------~W~~~~--~~~~~ssP~v~~--~~v~v~~~------~g~l~ald~~tG~ 181 (394)
T PRK11138 121 GKVYIGS-EKGQVYALNAEDGEV--------AWQTKV--AGEALSRPVVSD--GLVLVHTS------NGMLQALNESDGA 181 (394)
T ss_pred CEEEEEc-CCCEEEEEECCCCCC--------cccccC--CCceecCCEEEC--CEEEEECC------CCEEEEEEccCCC
Confidence 3444433 467899999887762 343211 111111223442 78888754 3579999999999
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccccc--Cc--cccCeEEEcc
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYK--NL--VGLNGIVYHP 210 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~--~~--~~~nGi~~~~ 210 (332)
..+..+...|..........++. +|.+|+.. ..+.++.++.. |+.. +- ........... .. ....-+ + .
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~-~~g~v~a~d~~~G~~~-W~-~~~~~~~~~~~~~~~~~~~~sP~-v-~ 255 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPATA-FGGAIVGG-DNGRVSAVLMEQGQLI-WQ-QRISQPTGATEIDRLVDVDTTPV-V-V 255 (394)
T ss_pred EeeeecCCCCcccccCCCCCEEE-CCEEEEEc-CCCEEEEEEccCChhh-he-eccccCCCccchhcccccCCCcE-E-E
Confidence 98877653221000011122333 34577754 46788888865 5532 21 11000000000 00 001111 2 2
Q ss_pred CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcCCC
Q 020019 211 DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESSDG 279 (332)
Q Consensus 211 dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~dg 279 (332)
++.+|+... .+.++.+|+.+++ +. ... .+..+..++++ +|++|+.+... ...+...+|
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~-----~~-W~~---~~~~~~~~~~~-~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQ-----IV-WKR---EYGSVNDFAVD-GGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCC-----EE-Eee---cCCCccCcEEE-CCEEEEEcCCCeEEEEECCCC
Confidence 568998775 5789999999872 22 111 12233344444 57899987543 344455666
No 76
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.018 Score=55.77 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=81.8
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~ 175 (332)
....+++|+..+|.++.... +...++.+|+++|+......+. .....+++.|||+ |+++.+. ...||.
T Consensus 201 ~~~p~wSPDG~~la~~s~~~---g~~~i~i~dl~~G~~~~l~~~~------~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFES---GRSALVIQTLANGAVRQVASFP------RHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eeeeEEcCCCCEEEEEEecC---CCcEEEEEECCCCCeEEccCCC------CCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 45778899733344333211 2356889999888765444332 1233589999996 7766443 346999
Q ss_pred EcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 176 VGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 176 v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
++.++. ..++.... ......+|+||| .|+++... ..+||+++++++ ..+.+...+ ..
T Consensus 272 ~d~~tg~~~~lt~~~-----------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-----~~~~lt~~~---~~ 332 (429)
T PRK03629 272 MDLASGQIRQVTDGR-----------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-----APQRITWEG---SQ 332 (429)
T ss_pred EECCCCCEEEccCCC-----------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-----CeEEeecCC---CC
Confidence 998754 33322111 123567999999 67554332 347999999876 334443321 22
Q ss_pred CCeEEEeCCCeEE
Q 020019 252 GDGLELLSPTKLV 264 (332)
Q Consensus 252 pdGi~~~~dG~l~ 264 (332)
....++.+||+.+
T Consensus 333 ~~~~~~SpDG~~I 345 (429)
T PRK03629 333 NQDADVSSDGKFM 345 (429)
T ss_pred ccCEEECCCCCEE
Confidence 3456788887644
No 77
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.95 E-value=0.0022 Score=58.17 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=90.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCcccee-eeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcC----
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLE-EVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVF---- 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~---- 119 (332)
-.+.+++ .++.+++++..-..|..+++.-.-. .. +..+++.-..... +.|||++... .--||+.-...
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~----P~WkPpFIs~la~eDRCHLNGlA~~~g-~p~yVTa~~~sD~~~ 177 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFV----PLWKPPFISKLAPEDRCHLNGMALDDG-EPRYVTALSQSDVAD 177 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECCCCccc----cccCCccccccCccCceeecceeeeCC-eEEEEEEeeccCCcc
Confidence 5577899 6678888885568899998753210 00 0012221000112 6799999863 33566543211
Q ss_pred C----CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCc
Q 020019 120 G----NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPK 194 (332)
Q Consensus 120 ~----~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p 194 (332)
+ ...+.+ ++|.++++... .+.++|...... +|+||+.|++.+.|.++|++ |+...+..-+.
T Consensus 178 gWR~~~~~gG~-vidv~s~evl~--------~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG---- 243 (335)
T TIGR03032 178 GWREGRRDGGC-VIDIPSGEVVA--------SGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG---- 243 (335)
T ss_pred cccccccCCeE-EEEeCCCCEEE--------cCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC----
Confidence 0 112233 36777776542 234677777776 57899999999999999997 88776654433
Q ss_pred ccccCccccCeEEEccCc-eEEEEeC
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
.+.||+|. | .++|+-+
T Consensus 244 -------~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 244 -------FTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred -------CCccccee--CCEEEEEec
Confidence 46799998 6 7777654
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0042 Score=60.18 Aligned_cols=141 Identities=12% Similarity=0.122 Sum_probs=82.2
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~ 175 (332)
.....+.|+..+|+++.... +...|+++|+++|+........ ......++.|||+ |+++-. +...||.
T Consensus 204 v~~p~wSpDG~~lay~s~~~---g~~~i~~~dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYAN---GRPRVYLLDLETGQRELVGNFP------GMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred eEeeEECCCCCEEEEEEecC---CCCEEEEEECCCCcEEEeecCC------CcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 45677888733444443221 2357999999988765433331 1234678999996 665543 3457999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.++...+.+.... ......+|+||| .|+++... ..+||+++++++ ..+.+...+ ...
T Consensus 275 ~d~~~~~~~~Lt~~~----------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-----~~~~lt~~~---~~~ 336 (435)
T PRK05137 275 MDLRSGTTTRLTDSP----------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-----NPRRISFGG---GRY 336 (435)
T ss_pred EECCCCceEEccCCC----------CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-----CeEEeecCC---Ccc
Confidence 998755333221110 123457899999 67665433 347999998865 344443221 112
Q ss_pred CeEEEeCCCe-EEEE
Q 020019 253 DGLELLSPTK-LVVA 266 (332)
Q Consensus 253 dGi~~~~dG~-l~va 266 (332)
....+.+||+ |+++
T Consensus 337 ~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 337 STPVWSPRGDLIAFT 351 (435)
T ss_pred cCeEECCCCCEEEEE
Confidence 3456788876 4444
No 79
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.014 Score=56.60 Aligned_cols=141 Identities=13% Similarity=0.200 Sum_probs=82.7
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~~ 175 (332)
....+++|+...|+++.... +...|+++|.++++......+. .....+++.|||+ ++++.+ +...||.
T Consensus 206 v~~p~wSpDg~~la~~s~~~---~~~~l~~~dl~~g~~~~l~~~~------g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFER---GRSAIYVQDLATGQRELVASFR------GINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred cccccCCCCCCEEEEEecCC---CCcEEEEEECCCCCEEEeccCC------CCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 45677888744455554321 2356899999888765433331 1223578999996 766543 3457999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.++...+.+... .......+|+||| .|+++... ..+||.+++.++ ..+.+...+ ...
T Consensus 277 ~d~~~g~~~~lt~~----------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-----~~~~lt~~g---~~~ 338 (433)
T PRK04922 277 MDLGSRQLTRLTNH----------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-----SAERLTFQG---NYN 338 (433)
T ss_pred EECCCCCeEECccC----------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-----CeEEeecCC---CCc
Confidence 99875433222111 0112357899999 77766433 346999998866 344443332 122
Q ss_pred CeEEEeCCCe-EEEE
Q 020019 253 DGLELLSPTK-LVVA 266 (332)
Q Consensus 253 dGi~~~~dG~-l~va 266 (332)
...++.+||+ |+++
T Consensus 339 ~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 339 ARASVSPDGKKIAMV 353 (433)
T ss_pred cCEEECCCCCEEEEE
Confidence 3578888876 4444
No 80
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.91 E-value=0.0017 Score=56.63 Aligned_cols=173 Identities=17% Similarity=0.121 Sum_probs=105.5
Q ss_pred CEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 57 RRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 57 ~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
..++++ ..+-+|.-+...+|... +++ +.++. .++.+.+.++ ++..++.. ...+..||++++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~------rTi-qh~ds---qVNrLeiTpd-k~~LAaa~------~qhvRlyD~~S~n 72 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICS------RTI-QHPDS---QVNRLEITPD-KKDLAAAG------NQHVRLYDLNSNN 72 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEE------EEE-ecCcc---ceeeEEEcCC-cchhhhcc------CCeeEEEEccCCC
Confidence 355555 67888998988888751 233 34543 6889999997 66454443 3468889999886
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCc-e
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-F 213 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~ 213 (332)
......+.++ ......+.+..+|+.-+|-+..|.+-..|.... ..+.+. +. ...|-|+++|+. .
T Consensus 73 p~Pv~t~e~h---~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~--------spVn~vvlhpnQte 138 (311)
T KOG0315|consen 73 PNPVATFEGH---TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HN--------SPVNTVVLHPNQTE 138 (311)
T ss_pred CCceeEEecc---CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc---CC--------CCcceEEecCCcce
Confidence 5444444322 244556778888987777776676655554321 111111 11 235899999998 9
Q ss_pred EEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 214 LIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|++.+. ++.|+.+|+.... -.. ...+ +.......+++.+||...++.
T Consensus 139 Lis~dq-sg~irvWDl~~~~----c~~-~liP-e~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 139 LISGDQ-SGNIRVWDLGENS----CTH-ELIP-EDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred EEeecC-CCcEEEEEccCCc----ccc-ccCC-CCCcceeeEEEcCCCcEEEEe
Confidence 998875 6679889987541 111 1122 122333456666666666554
No 81
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.90 E-value=0.014 Score=51.14 Aligned_cols=208 Identities=20% Similarity=0.191 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCC
Q 020019 65 DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSG 144 (332)
Q Consensus 65 ~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~ 144 (332)
+|.|..+|+.+++. .|....+....++....+.. ++++|+++. .+.|+.||.++|+..+...++.
T Consensus 2 ~g~l~~~d~~tG~~--------~W~~~~~~~~~~~~~~~~~~-~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKE--------LWSYDLGPGIGGPVATAVPD-GGRVYVASG------DGNLYALDAKTGKVLWRFDLPG 66 (238)
T ss_dssp TSEEEEEETTTTEE--------EEEEECSSSCSSEEETEEEE-TTEEEEEET------TSEEEEEETTTSEEEEEEECSS
T ss_pred CCEEEEEECCCCCE--------EEEEECCCCCCCccceEEEe-CCEEEEEcC------CCEEEEEECCCCCEEEEeeccc
Confidence 57888999877762 34322110001222114433 389999964 4679999999999988887732
Q ss_pred CCCCCCCccceEECCCCcEEEEeCCCCeEEEEc-CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCe
Q 020019 145 PSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG-VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGN 223 (332)
Q Consensus 145 ~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~-~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~ 223 (332)
+. ..+ ..+ .++.+|+... .+.|+.+| .+|+..-.......+ +. ......-..++ ++.+|+... ++.
T Consensus 67 ~~---~~~--~~~-~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~-~~---~~~~~~~~~~~-~~~~~~~~~-~g~ 133 (238)
T PF13360_consen 67 PI---SGA--PVV-DGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSP-PA---GVRSSSSPAVD-GDRLYVGTS-SGK 133 (238)
T ss_dssp CG---GSG--EEE-ETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSC-TC---STB--SEEEEE-TTEEEEEET-CSE
T ss_pred cc---cce--eee-cccccccccc-eeeeEecccCCcceeeeecccccc-cc---ccccccCceEe-cCEEEEEec-cCc
Confidence 21 111 333 3457888873 45999999 568764331111100 00 01122334443 347887765 778
Q ss_pred EEEEeCCCCCCccceeEEEEecCCCCCC-------CCeEEEeCCCeEEEEeCCce-EEEEcCCCceEEEEEeeecCCCcc
Q 020019 224 LFKIDIVDGVGEGEEIKLIRVAGGPLSF-------GDGLELLSPTKLVVAGNPSA-RLVESSDGWETAAVVAKFSGPVHR 295 (332)
Q Consensus 224 i~~id~~~~~~~~~~~~~v~~~g~~~~~-------pdGi~~~~dG~l~va~~~~~-~~v~~~dg~~~~~~~~~~~~~~~~ 295 (332)
|+.+|+++|+ .+-........... ..+-.+-.+|.+|++..... ..+....| +.. .... ..
T Consensus 134 l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg-~~~-w~~~-----~~ 202 (238)
T PF13360_consen 134 LVALDPKTGK----LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG-EKL-WSKP-----IS 202 (238)
T ss_dssp EEEEETTTTE----EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT-EEE-EEEC-----SS
T ss_pred EEEEecCCCc----EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCC-CEE-EEec-----CC
Confidence 9999999882 33333332101011 11333334579999986542 33466666 321 2221 11
Q ss_pred cceE-EEEECCeEEEEE
Q 020019 296 LATA-ATVKDGRVYLNH 311 (332)
Q Consensus 296 ~pt~-va~~~g~lyv~~ 311 (332)
.+.. ....++.||+.+
T Consensus 203 ~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 203 GIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp -ECECEECCCTEEEEEE
T ss_pred CccCCceeeCCEEEEEe
Confidence 1222 333788888866
No 82
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.90 E-value=0.012 Score=52.28 Aligned_cols=232 Identities=12% Similarity=0.117 Sum_probs=137.3
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+..-..++++..+||+..++..+++.+..+|..+++. .. .+..+ . .-+.+++++++ ++-.|...
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~----t~--~f~GH-~---~dVlsva~s~d-n~qivSGS--- 124 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES----TR--RFVGH-T---KDVLSVAFSTD-NRQIVSGS--- 124 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcE----EE--EEEec-C---CceEEEEecCC-CceeecCC---
Confidence 344334667899999999888888899999999988763 12 34421 1 25789999997 66555532
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEE-EEeCCCCeEEEEcCCCceEEEecCCCCCCcccc
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAY-VTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~ly-vtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~ 197 (332)
+...|..|+...+......+- .+..-.+.+.+.|+. +.| ++.+-...|-..|.++-.... .+.
T Consensus 125 --rDkTiklwnt~g~ck~t~~~~----~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~----~~~----- 189 (315)
T KOG0279|consen 125 --RDKTIKLWNTLGVCKYTIHED----SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT----TFI----- 189 (315)
T ss_pred --CcceeeeeeecccEEEEEecC----CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh----ccc-----
Confidence 345677888875443322211 113456778999984 544 444445555555655432110 111
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe--CCceEEEE
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG--NPSARLVE 275 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~--~~~~~~v~ 275 (332)
......|-++++|||.|-.+-...++++-+|+..++ .... ++ .......++|.|+ +.|.+- ..++.+-.
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lys--l~--a~~~v~sl~fspn-rywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYS--LE--AFDIVNSLCFSPN-RYWLCAATATSIKIWD 260 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEe--cc--CCCeEeeEEecCC-ceeEeeccCCceEEEe
Confidence 023457889999999998887888999999998652 3322 22 2344567899885 666664 33444334
Q ss_pred cCCCceEEEEEeeecCC--CcccceE--EEE--ECCeEEE
Q 020019 276 SSDGWETAAVVAKFSGP--VHRLATA--ATV--KDGRVYL 309 (332)
Q Consensus 276 ~~dg~~~~~~~~~~~~~--~~~~pt~--va~--~~g~lyv 309 (332)
...+....++.-.+.++ ....|-| +++ ++.+||-
T Consensus 261 l~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 261 LESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred ccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 44442222222222222 1223433 566 4667774
No 83
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.88 E-value=0.0095 Score=59.29 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=124.2
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..+++...|+++-.. ..-|+|.++.-....+ .+-+..-+ .....+++.|| |.+.++..+ .+++
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--------VlKQQgH~--~~i~~l~YSpD-gq~iaTG~e-----DgKV 374 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--------VLKQQGHS--DRITSLAYSPD-GQLIATGAE-----DGKV 374 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccce--------eeeccccc--cceeeEEECCC-CcEEEeccC-----CCcE
Confidence 346677777755433 5557777776554433 11111011 14578999997 887776553 5789
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
.+||..+|-= .+.+.. ..+...++.+..+|+..++.+..|.|..+|.. .+-.+ +|..| .......
T Consensus 375 KvWn~~SgfC--~vTFte---Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-----Tft~P----~p~Qfsc 440 (893)
T KOG0291|consen 375 KVWNTQSGFC--FVTFTE---HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-----TFTSP----EPIQFSC 440 (893)
T ss_pred EEEeccCceE--EEEecc---CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee-----eecCC----CceeeeE
Confidence 9999887632 233421 23566789999999999999999999999876 23222 33333 2345678
Q ss_pred EEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CC---ceEEEEcCCC
Q 020019 206 IVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NP---SARLVESSDG 279 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~---~~~~v~~~dg 279 (332)
++.||.| -+.....+.-.|+.++.++|+ ....+ .| +-+-..++.++++|.+.++. +. ..|-++...+
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGq----llDiL--sG-HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQ----LLDIL--SG-HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCe----eeehh--cC-CCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 9999999 555555566689999999983 23322 22 22335689999999988885 32 2344454444
No 84
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00044 Score=65.23 Aligned_cols=170 Identities=9% Similarity=0.147 Sum_probs=99.1
Q ss_pred cccceEEcCCCCEEEEE-ec------------CCeEEEEECCCCCCCccceeeeEEecccC-------cCCCccceEEEe
Q 020019 46 FRECAKWDDSGRRFIVS-FL------------DGGIGQVAVPDDYPPGTVLEEVTLVKDLE-------LTGNGSLGLVLD 105 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~------------~g~I~~vd~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~gi~vd 105 (332)
+-..|++++||.+|++. .. .|+|.+++..+.- . . ..|. ...++|+|++++
T Consensus 178 ~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~------~---~-d~p~~~~~i~s~G~RN~qGl~w~ 247 (399)
T COG2133 178 FGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGII------P---A-DNPFPNSEIWSYGHRNPQGLAWH 247 (399)
T ss_pred CcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCccc------c---c-CCCCCCcceEEeccCCccceeec
Confidence 34569999999888764 22 2567777654321 0 0 0111 112579999999
Q ss_pred CCCCeEEEEEeCc---C-C-----CccceEEEEECCC-C-----cEE----EEEecCCCC---CCCCCccceEECCC---
Q 020019 106 HPRNRLLVVAADV---F-G-----NKYSAVAAYDLST-W-----NRL----FLTQLSGPS---DGKSCADDVTVDAE--- 160 (332)
Q Consensus 106 ~~~g~l~v~~~~~---~-~-----~~~~~l~~~d~~~-g-----~~~----~~~~l~~~~---~~~~~~ndiavd~d--- 160 (332)
|.+|.||+++++. - + .+.++-+.|-... | ... ....+..|. ....-|.+|++-..
T Consensus 248 P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~f 327 (399)
T COG2133 248 PVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLF 327 (399)
T ss_pred CCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcC
Confidence 9889999999764 1 1 1222333332222 1 100 000111010 01245677888742
Q ss_pred ----CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC-CCeEEEEeCC
Q 020019 161 ----GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF-SGNLFKIDIV 230 (332)
Q Consensus 161 ----G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~-~~~i~~id~~ 230 (332)
|.++|+.-....+.+.+++|....+... .+.. .....+-+++..+||.||+++-. +++|||+...
T Consensus 328 P~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~-fl~~----d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 328 PAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTG-FLSG----DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred ccccCcEEEEeecceeEEEeccCCCcceEEEE-EEec----CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 5788888777778889998874433211 0000 01135789999999988888877 6799999765
No 85
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.87 E-value=0.02 Score=54.93 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=111.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.-..+++.+++..+|+...+|.|..|+...+.. . .+. +..-.+...+|+.+.. +.++.+..| ..
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-----~--~~~--g~~h~nqI~~~~~~~~-~~~~t~g~D------d~ 385 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-----D--RLA--GKGHTNQIKGMAASES-GELFTIGWD------DT 385 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccc-----c--ccc--cccccceEEEEeecCC-CcEEEEecC------Ce
Confidence 335688999999888888899999999877653 1 121 1111135778998875 888888775 34
Q ss_pred EEEEECCCCcEEEE--EecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFL--TQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~--~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
|.+++.+.+..... +.+ ...|-++++.++|. +.++... .|..+...++.... . -...
T Consensus 386 l~~~~~~~~~~t~~~~~~l------g~QP~~lav~~d~~~avv~~~~--~iv~l~~~~~~~~~--~----------~~y~ 445 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKL------GSQPKGLAVLSDGGTAVVACIS--DIVLLQDQTKVSSI--P----------IGYE 445 (603)
T ss_pred EEEEecccCcccccceeec------CCCceeEEEcCCCCEEEEEecC--cEEEEecCCcceee--c----------cccc
Confidence 67777654332211 333 24466899999975 4444432 22233222222211 1 1234
Q ss_pred cCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 203 LNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
+.+++++||+ .+-|. ...++|+.+.+.+... .++.... .....+..+++.|||..+++...
T Consensus 446 ~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l----~ee~~~~-~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDEL----KEEAKLL-EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred cceEEEcCCCCEEEEe-cccceEEEEEecCCcc----cceeeee-cccCCceEEEECCCCcEEEEecc
Confidence 6699999999 55555 4566688787776522 2221211 13356788999999998888643
No 86
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.83 E-value=2.6e-05 Score=44.71 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=24.6
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKV 176 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v 176 (332)
..|+|++++++|++||+|+.+++|.++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 368999999999999999999999875
No 87
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.82 E-value=0.019 Score=50.26 Aligned_cols=198 Identities=21% Similarity=0.201 Sum_probs=105.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
++..++.+|+. ..++.|+.+|..+++. .|..........+ ..++. +++|+...+ +.++.+|
T Consensus 32 ~~~~~~~v~~~-~~~~~l~~~d~~tG~~--------~W~~~~~~~~~~~--~~~~~--~~v~v~~~~------~~l~~~d 92 (238)
T PF13360_consen 32 AVPDGGRVYVA-SGDGNLYALDAKTGKV--------LWRFDLPGPISGA--PVVDG--GRVYVGTSD------GSLYALD 92 (238)
T ss_dssp EEEETTEEEEE-ETTSEEEEEETTTSEE--------EEEEECSSCGGSG--EEEET--TEEEEEETT------SEEEEEE
T ss_pred EEEeCCEEEEE-cCCCEEEEEECCCCCE--------EEEeeccccccce--eeecc--cccccccce------eeeEecc
Confidence 45455555555 4679999999887862 2332211110111 34443 789988753 4799999
Q ss_pred CCCCcEEEEE-ecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEE
Q 020019 131 LSTWNRLFLT-QLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVY 208 (332)
Q Consensus 131 ~~~g~~~~~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~ 208 (332)
.++|++.+.. ....+......+...+++ ++.+|+... .+.|+.+|++ |+......................++-.+
T Consensus 93 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp TTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE
T ss_pred cCCcceeeeeccccccccccccccCceEe-cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE
Confidence 9999998874 332121111233345555 334666665 7999999966 76543221111000000000011123333
Q ss_pred ccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC-CceEEEEcCCC
Q 020019 209 HPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN-PSARLVESSDG 279 (332)
Q Consensus 209 ~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~-~~~~~v~~~dg 279 (332)
-.++.+|++.... +++.+|..++ ... ... ....+.+.....++.||+.+. .....+...+|
T Consensus 171 ~~~~~v~~~~~~g-~~~~~d~~tg-----~~~-w~~---~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 171 ISDGRVYVSSGDG-RVVAVDLATG-----EKL-WSK---PISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp CCTTEEEEECCTS-SEEEEETTTT-----EEE-EEE---CSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred EECCEEEEEcCCC-eEEEEECCCC-----CEE-EEe---cCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3356999987655 4778898887 322 222 123344534556788999983 33444566666
No 88
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.82 E-value=0.03 Score=52.97 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=69.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+.|+.+|.++|+..+......+..........++. ++.+|+.. ..+.++.+|+. |+....................
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~~-~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVGF-AGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEEC-CCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 356888999999887766553221000001112232 25566654 45789999974 6543211100000000000000
Q ss_pred cc-CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc-eEEEEcCCC
Q 020019 202 GL-NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS-ARLVESSDG 279 (332)
Q Consensus 202 ~~-nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~-~~~v~~~dg 279 (332)
.. ....+ .++.+|++.. .+.++.+++++++ .+-.... ......+++ ++++|+..... ...+...+|
T Consensus 232 ~~~~~p~~-~~~~vy~~~~-~g~l~a~d~~tG~----~~W~~~~-----~~~~~p~~~-~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 232 DVDGDPVV-DGGQVYAVSY-QGRVAALDLRSGR----VLWKRDA-----SSYQGPAVD-DNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred ccCCccEE-ECCEEEEEEc-CCEEEEEECCCCc----EEEeecc-----CCccCceEe-CCEEEEECCCCeEEEEECCCC
Confidence 00 01122 2568998775 5689999998772 2221221 122234443 57899887443 343455566
No 89
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.81 E-value=0.035 Score=53.12 Aligned_cols=163 Identities=14% Similarity=0.181 Sum_probs=91.3
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP 145 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~ 145 (332)
..|+.+|.++... . .+. .+. .......++++..+|+++.... +...|++||.++++......+.
T Consensus 170 ~~l~~~d~~g~~~-----~--~l~-~~~---~~~~~p~~Spdg~~la~~~~~~---~~~~i~v~d~~~g~~~~~~~~~-- 233 (417)
T TIGR02800 170 YELQVADYDGANP-----Q--TIT-RSR---EPILSPAWSPDGQKLAYVSFES---GKPEIYVQDLATGQREKVASFP-- 233 (417)
T ss_pred ceEEEEcCCCCCC-----E--Eee-cCC---CceecccCCCCCCEEEEEEcCC---CCcEEEEEECCCCCEEEeecCC--
Confidence 3588887764431 1 233 221 1244567888734454443321 2356899999988765433331
Q ss_pred CCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC-
Q 020019 146 SDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF- 220 (332)
Q Consensus 146 ~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~- 220 (332)
.....+++.|||+ ++++... ...||.++.+++....+.... .......|++|| +|+++...
T Consensus 234 ----~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----------~~~~~~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 234 ----GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP----------GIDTEPSWSPDGKSIAFTSDRG 299 (417)
T ss_pred ----CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC----------CCCCCEEECCCCCEEEEEECCC
Confidence 2233478999985 7776543 457999998754332221110 012245789999 77655432
Q ss_pred -CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 221 -SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 221 -~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
..+||.+++.++ ..+.+...+ ......++.++|+.++.
T Consensus 300 g~~~iy~~d~~~~-----~~~~l~~~~---~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 300 GSPQIYMMDADGG-----EVRRLTFRG---GYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCceEEEEECCCC-----CEEEeecCC---CCccCeEECCCCCEEEE
Confidence 347999998866 333343321 23345678888764444
No 90
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.80 E-value=0.026 Score=54.62 Aligned_cols=181 Identities=12% Similarity=0.135 Sum_probs=96.3
Q ss_pred ceEEcCCCC---EEEEEec--CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 49 CAKWDDSGR---RFIVSFL--DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 49 gia~d~~g~---~~~~~~~--~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.+.|+|||+ ++|++.. ..+||..+..+++. + .+...++ .....++.||..+|.++....+ .
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----~--~lt~~~g----~~~~p~wSPDG~~Laf~s~~~g---~ 254 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----K--KILALQG----NQLMPTFSPRKKLLAFISDRYG---N 254 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----e--EeecCCC----CccceEECCCCCEEEEEECCCC---C
Confidence 578999986 3345533 35799999987752 1 2332222 2335688887224444432111 1
Q ss_pred ceEEE--EECCCC---cEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eC-CCCeEEEEcCC--CceEEEecCCCCCC
Q 020019 124 SAVAA--YDLSTW---NRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DV-TGSKIWKVGVK--GEFLSIISSPLFTP 193 (332)
Q Consensus 124 ~~l~~--~d~~~g---~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~-~~~~I~~v~~~--g~~~~~~~~~~~~~ 193 (332)
..++. |+.+++ +......- ........++.|||+ |+++ +. +...||+++.+ +...+.+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~-----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~---- 325 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNE-----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK---- 325 (428)
T ss_pred cceeEEEeecccCCCCcceEeecC-----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC----
Confidence 12333 566543 32222211 012234579999996 5554 43 33478888754 2222222111
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEE
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va 266 (332)
.......+|+||| .|+++... ..+|+.++++++ ..+.+... . .......+.+||+ |+++
T Consensus 326 ------~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-----~~~~Lt~~--~-~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 326 ------YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-----RDYQLTTS--P-ENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ------CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-----CeEEccCC--C-CCccceEECCCCCEEEEE
Confidence 0122456899999 77766543 347999999877 23333211 1 2334577888876 4444
No 91
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.026 Score=54.59 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=85.2
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~ 175 (332)
.....+.|+..+|.++..+. +...|+.+|.++++......+. .....+++.|||+ |+++... .-.||.
T Consensus 206 v~~p~wSPDG~~la~~s~~~---~~~~i~i~dl~tg~~~~l~~~~------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFEN---KKSQLVVHDLRSGARKVVASFR------GHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred cccceEcCCCCEEEEEEecC---CCcEEEEEeCCCCceEEEecCC------CccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 46678899733444443221 2346899999888755443332 1223589999996 6665433 336899
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC--CCCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT--FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~--~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.++...+.+... .......+|+||| .|+++.. +.-+||.++..++ ..+.+... .
T Consensus 277 ~d~~~~~~~~lt~~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-----~~~~l~~~----~-- 335 (429)
T PRK01742 277 MGANGGTPSQLTSG----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-----GASLVGGR----G-- 335 (429)
T ss_pred EECCCCCeEeeccC----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-----CeEEecCC----C--
Confidence 98775433322111 1124578999999 6776543 3447888887755 23333211 1
Q ss_pred CeEEEeCCCeEE-EEeCCceEEEEcCCC
Q 020019 253 DGLELLSPTKLV-VAGNPSARLVESSDG 279 (332)
Q Consensus 253 dGi~~~~dG~l~-va~~~~~~~v~~~dg 279 (332)
....+.+||+.+ ++.......+...+|
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g 363 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSG 363 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCC
Confidence 235677887644 444433343444545
No 92
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.77 E-value=5.4e-05 Score=43.41 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=24.3
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
..|.||+++++|.|||+|..+++|+++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 468899999999999999999999875
No 93
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.75 E-value=0.0086 Score=57.26 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=115.6
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+.+|-++++.++|...+... ...|..+...++- .-+ ++++ .+.++++.++ +. +++-++ ..
T Consensus 405 g~QP~~lav~~d~~~avv~~-~~~iv~l~~~~~~---------~~~-~~~y---~~s~vAv~~~-~~-~vaVGG----~D 464 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVAC-ISDIVLLQDQTKV---------SSI-PIGY---ESSAVAVSPD-GS-EVAVGG----QD 464 (603)
T ss_pred CCCceeEEEcCCCCEEEEEe-cCcEEEEecCCcc---------eee-cccc---ccceEEEcCC-CC-EEEEec----cc
Confidence 45889999999987666553 2456666533222 111 2343 5678999997 66 444333 24
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
++|++|.++.++......+. +-..-+.++++.|||..+++.-.++.+..++...+.... ..-.| .....
T Consensus 465 gkvhvysl~g~~l~ee~~~~---~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~F-------HtakI 533 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLL---EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAF-------HTAKI 533 (603)
T ss_pred ceEEEEEecCCcccceeeee---cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ceeee-------eeeeE
Confidence 67999998765543332221 113567889999999766665566777777765332210 00011 12346
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
|+++|+|+..+..+-.....|+.++.+.+ .+.+...+++..+...++.-.+..|.-++..
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP------~~~i~iknAH~~gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKP------AKHIIIKNAHLGGVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccCh------hhheEeccccccCceeEEEecCceEEeccCc
Confidence 89999999988877777778888888765 2224444344444667777666666555543
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.75 E-value=0.0014 Score=57.08 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=108.9
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceE---EEeCCCCeEEEEEeCcCCCcc
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGL---VLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi---~vd~~~g~l~v~~~~~~~~~~ 123 (332)
...++++.|.+.+++.-.+.-+..++.+.-+.+ .. ++- +++.|| ..=.. ++-+++..+ .
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---p~--E~~-------ghtg~Ir~v~wc~e-D~~iLSSad-----d 164 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---PK--EIS-------GHTGGIRTVLWCHE-DKCILSSAD-----D 164 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCC---ch--hhc-------CCCCcceeEEEecc-CceEEeecc-----C
Confidence 356889998876665533333444444332210 11 121 133333 22222 333444333 3
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..+..||-++|+.++...++ +.++.+-+.++|++..+.. .+.|.-.|++ +.+.. +..| .
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs------~k~P------~ 225 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKS------YKMP------C 225 (334)
T ss_pred CceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEec-CceeEEeccccccceee------ccCc------c
Confidence 45788999999998888774 4456789999997655543 4555556665 22211 1111 2
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
..+.-.++|+-..||+-.....+|++|..++. .+... .. +..+-.-.+.+.|||.+|.++..
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~Tge----Ei~~~-nk-gh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGE----EIGSY-NK-GHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCc----eeeec-cc-CCCCceEEEEECCCCceeeccCC
Confidence 34555688998999999999999999999882 33322 23 24455678899999999999754
No 95
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.75 E-value=0.042 Score=54.08 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred eEEEeCCCCeEEEEEeCcC------------CCccceEEEEECCCCcEEEEEecCCCCC-CCCCccceEE----CCCCc-
Q 020019 101 GLVLDHPRNRLLVVAADVF------------GNKYSAVAAYDLSTWNRLFLTQLSGPSD-GKSCADDVTV----DAEGN- 162 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~------------~~~~~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~ndiav----d~dG~- 162 (332)
..++|+.++++|+...+.. ....+.|+.+|.++|+..+..+...+.. ....+.-..+ +-+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 4677876689999864321 0112479999999999998776532110 0011111111 12343
Q ss_pred ---EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEe-----------------CCC
Q 020019 163 ---AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIH-----------------TFS 221 (332)
Q Consensus 163 ---lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~-----------------~~~ 221 (332)
+|+. ...|.++.+|.. |+..--.... ..+++.++ +.+|+.. ...
T Consensus 301 ~~~V~~g-~~~G~l~ald~~tG~~~W~~~~~-------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 301 VPAIVHA-PKNGFFYVLDRTTGKLISARPEV-------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred eEEEEEE-CCCceEEEEECCCCcEeeEeEee-------------ccccccCC-ceEEEccccccccCcccccCCCCCCCc
Confidence 4554 456889999975 6643211110 11334443 5666632 235
Q ss_pred CeEEEEeCCCCCCccceeEEEEecC-C---CCCCC--CeEEEeCCCeEEEEeCC-ceEEEEcCCCceEEEEEeeecCCCc
Q 020019 222 GNLFKIDIVDGVGEGEEIKLIRVAG-G---PLSFG--DGLELLSPTKLVVAGNP-SARLVESSDGWETAAVVAKFSGPVH 294 (332)
Q Consensus 222 ~~i~~id~~~~~~~~~~~~~v~~~g-~---~~~~p--dGi~~~~dG~l~va~~~-~~~~v~~~dg~~~~~~~~~~~~~~~ 294 (332)
++|+.+|+.+++ .+=...... . .+..| .+-.+..++.||+.+.. ....+...+|...- ...+..+..
T Consensus 366 G~l~AlD~~tG~----~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW--~~~~~~~~~ 439 (488)
T cd00216 366 GGLAALDPKTGK----VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW--KFRTPSGIQ 439 (488)
T ss_pred eEEEEEeCCCCc----EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee--EEECCCCce
Confidence 678888888773 111111110 0 00011 12222345788887643 33444566672211 122222212
Q ss_pred ccceEEEE-ECCeEEEEEecCc
Q 020019 295 RLATAATV-KDGRVYLNHMLGF 315 (332)
Q Consensus 295 ~~pt~va~-~~g~lyv~~~~g~ 315 (332)
..| +++ .+|++||....|-
T Consensus 440 a~P--~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 440 ATP--MTYEVNGKQYVGVMVGG 459 (488)
T ss_pred EcC--EEEEeCCEEEEEEEecC
Confidence 223 333 7899999766663
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.0057 Score=57.53 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=135.6
Q ss_pred ceEEcCCCC-EEEEEecCCeEEEEECCCCCCCccceeeeEEecccC-cCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 49 CAKWDDSGR-RFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLE-LTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 49 gia~d~~g~-~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
...+.++|. ..+++....-+|.+|..+.+. + -+..|. ....+..-.+|.++ +. |++..+ ..+.|
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~-----~---k~~~~~g~e~~~~e~FeVShd-~~-fia~~G----~~G~I 327 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKV-----T---KLKPPYGVEEKSMERFEVSHD-SN-FIAIAG----NNGHI 327 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeecccccc-----c---cccCCCCcccchhheeEecCC-CC-eEEEcc----cCceE
Confidence 456777777 555554455678888765542 1 111111 11123445677786 55 444443 24567
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
..+-.++++......++ ....+++++.||...+...+.|.||.+|..-. ....+.+. +...-.-
T Consensus 328 ~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---------G~v~gts 392 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIE------GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD---------GSVHGTS 392 (514)
T ss_pred Eeehhhhhhhhheeeec------cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec---------Cccceee
Confidence 77778888877666553 45668999999975555556789999997633 22222221 1234457
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCc--cceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eC---CceEEEEcCCC
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGE--GEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GN---PSARLVESSDG 279 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~--~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~---~~~~~v~~~dg 279 (332)
||.+.+|.++.+-+.+|-|-.++.++-... .++++.+. .-....+.|.+.+|..|..- .. +..++|..+.-
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 888899976666677776555554421110 11233221 11135678999999775544 32 34577777643
Q ss_pred ceEEEEEeeecC--CCcccceEEEE-E-CCeEEEEEecCc
Q 020019 280 WETAAVVAKFSG--PVHRLATAATV-K-DGRVYLNHMLGF 315 (332)
Q Consensus 280 ~~~~~~~~~~~~--~~~~~pt~va~-~-~g~lyv~~~~g~ 315 (332)
++...++. ..+..++|++| . +|.|-+.+..|.
T Consensus 470 ----TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 470 ----TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred ----eeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 67776653 23677899999 4 677777666553
No 97
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.73 E-value=0.012 Score=54.82 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=78.6
Q ss_pred cceEEEeCCCCeEEEEEeCcC-CCccceEEEEECCCCcEEEEEecCCCC----------CCCCCccceEECCCCc-EEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVF-GNKYSAVAAYDLSTWNRLFLTQLSGPS----------DGKSCADDVTVDAEGN-AYVT 166 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~-~~~~~~l~~~d~~~g~~~~~~~l~~~~----------~~~~~~ndiavd~dG~-lyvt 166 (332)
+-||++.+ +|.+||++.... ......|+.|+.+ |+....+.++..- ..+...-+|++.++|+ ||+.
T Consensus 87 ~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45999966 499999987531 0112579999987 7765555443210 1235677899999997 8875
Q ss_pred eCC-------C--------CeEEEEcCC--CceE-EE-ecCCCCCCcccccCccccCeEEEccCceEEEEeCC-------
Q 020019 167 DVT-------G--------SKIWKVGVK--GEFL-SI-ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------- 220 (332)
Q Consensus 167 d~~-------~--------~~I~~v~~~--g~~~-~~-~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------- 220 (332)
-.. . -+|+++++. ++.. .+ +....... .....++..++.-+|+.|+|-+-.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~---~~~~~~isd~~al~d~~lLvLER~~~~~~~~ 241 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT---APGDNGISDIAALPDGRLLVLERDFSPGTGN 241 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcccc---ccCCCCceeEEEECCCcEEEEEccCCCCccc
Confidence 321 1 357788865 3221 11 11111000 002356677888889999998876
Q ss_pred CCeEEEEeCCC
Q 020019 221 SGNLFKIDIVD 231 (332)
Q Consensus 221 ~~~i~~id~~~ 231 (332)
..+|+++++..
T Consensus 242 ~~ri~~v~l~~ 252 (326)
T PF13449_consen 242 YKRIYRVDLSD 252 (326)
T ss_pred eEEEEEEEccc
Confidence 45789999863
No 98
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.013 Score=57.21 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=105.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEEC-CCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAV-PDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.....++|.++|+.+++...+.+|..+|. +++.. ..++..++ ..+..+.++++ ++++++..+ .
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~------~~~l~gH~----~~v~~~~f~p~-g~~i~Sgs~-----D 267 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN------LKTLKGHS----TYVTSVAFSPD-GNLLVSGSD-----D 267 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeE------EEEecCCC----CceEEEEecCC-CCEEEEecC-----C
Confidence 35567999999996666677888888887 33331 11332222 25689999997 776666543 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+.+.+||.++++........ ....+++++.++|+++++.+..+.|..+|..+...+... .+.... ... -.
T Consensus 268 ~tvriWd~~~~~~~~~l~~h-----s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~--~~~~~~--~~~-~~ 337 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLKGH-----SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLK--LLSGAE--NSA-PV 337 (456)
T ss_pred CcEEEEeccCCeEEEeeecc-----CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeee--cccCCC--CCC-ce
Confidence 56889999998876554431 246778999999998888888999999998755422100 110000 001 24
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.-+.++|+| +|+++ ..++.+--+++..+
T Consensus 338 ~~~~fsp~~~~ll~~-~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSA-SLDRTLKLWDLRSG 366 (456)
T ss_pred eEEEECCCCcEEEEe-cCCCeEEEEEccCC
Confidence 788999999 55554 55666666666654
No 99
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.68 E-value=0.036 Score=49.58 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=139.9
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
-....+-|.+|.+.+++...+|++..+|.-+... + ..+..|. ..+...++.|. |+ +|+.++. .+
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----~--haipl~s---~WVMtCA~sPS-g~-~VAcGGL----dN 119 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----V--HAIPLPS---SWVMTCAYSPS-GN-FVACGGL----DN 119 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----e--eEEecCc---eeEEEEEECCC-CC-eEEecCc----Cc
Confidence 3556789999999998888899999999765542 1 2332232 25678899996 88 5555543 23
Q ss_pred eEEEEECCCC--c--EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccC
Q 020019 125 AVAAYDLSTW--N--RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKN 199 (332)
Q Consensus 125 ~l~~~d~~~g--~--~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~ 199 (332)
.-.+|++++. + ......+.+. ..+...+.+-+|+ -.+|.++.....-.|.. |+..+.+....
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gH---tgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~--------- 186 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGH---TGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHT--------- 186 (343)
T ss_pred eeEEEecccccccccceeeeeecCc---cceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCc---------
Confidence 4456777643 2 2222335322 3577778887765 66777777665556643 66554432211
Q ss_pred ccccCeEEEcc-CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe--CCceEEEEc
Q 020019 200 LVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG--NPSARLVES 276 (332)
Q Consensus 200 ~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~--~~~~~~v~~ 276 (332)
.-..+|.+.| +++.||+-.-...-..+|...+ .-++.+.. .-.-...+.+-|+|.-|+++ +...|+...
T Consensus 187 -gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~g---hesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 187 -GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEG---HESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred -ccEEEEecCCCCCCeEEecccccceeeeeccCc----ceeEeecc---cccccceEEEccCCCeeeecCCCceeEEEee
Confidence 1235788999 7799998877666666777765 24554442 22345678888999888886 345676665
Q ss_pred CCCceEEEEEeeecCCCccc-ceEEEE-ECCeEEEEEecC
Q 020019 277 SDGWETAAVVAKFSGPVHRL-ATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 277 ~dg~~~~~~~~~~~~~~~~~-pt~va~-~~g~lyv~~~~g 314 (332)
..+ +...+-. .+.... .++++| ..|||..+....
T Consensus 259 RaD-~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 259 RAD-QELAVYS---HDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cCC-cEEeeec---cCcccCCceeEEEcccccEEEeeecC
Confidence 555 2222222 222223 478999 677777654433
No 100
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.68 E-value=0.022 Score=51.46 Aligned_cols=206 Identities=11% Similarity=0.070 Sum_probs=109.4
Q ss_pred ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC----CcE-EEEEecCCCCC--CCCCccceEECCCCcE
Q 020019 91 DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST----WNR-LFLTQLSGPSD--GKSCADDVTVDAEGNA 163 (332)
Q Consensus 91 ~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~----g~~-~~~~~l~~~~~--~~~~~ndiavd~dG~l 163 (332)
+|.+. .++||++.|. +.+||++++ .+....||.+. +.. ...+.++.+.. ....|.++++..-...
T Consensus 19 Dp~L~--N~WGia~~p~-~~~WVadng-----T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F 90 (336)
T TIGR03118 19 DPGLR--NAWGLSYRPG-GPFWVANTG-----TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF 90 (336)
T ss_pred Ccccc--ccceeEecCC-CCEEEecCC-----cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce
Confidence 44443 7899999995 999999975 34455677651 111 11244432221 2357888888754434
Q ss_pred EEEeCCC--CeEEE-EcCCCceEEEec--CCCCCCcc--c---ccCccccCeEEEccC--c-eEEEEeCCCCeEEEEeCC
Q 020019 164 YVTDVTG--SKIWK-VGVKGEFLSIIS--SPLFTPKE--W---YKNLVGLNGIVYHPD--G-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 164 yvtd~~~--~~I~~-v~~~g~~~~~~~--~~~~~~p~--~---~~~~~~~nGi~~~~d--G-~Lyva~~~~~~i~~id~~ 230 (332)
-|+.... ...+. .+.+|+...|.. .+..+.+. . .....-..|+|+... + .||.+|..+++|-.+|-.
T Consensus 91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 4443211 12222 233444443321 00100000 0 011234578888754 4 999999999999888754
Q ss_pred CCCCcccee-EEEEecCCCC-CCCCeEEEeCCCeEEEEe---CC-----------ceEEEEcCCCceEEEEEeeec-CCC
Q 020019 231 DGVGEGEEI-KLIRVAGGPL-SFGDGLELLSPTKLVVAG---NP-----------SARLVESSDGWETAAVVAKFS-GPV 293 (332)
Q Consensus 231 ~~~~~~~~~-~~v~~~g~~~-~~pdGi~~~~dG~l~va~---~~-----------~~~~v~~~dg~~~~~~~~~~~-~~~ 293 (332)
=.+. .+ ..+.-+.-+. -.|-+|.-- +++|||+= +. .-.-++..+| .++.++. ...
T Consensus 171 f~~~---~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~ 242 (336)
T TIGR03118 171 FRPP---PLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGR 242 (336)
T ss_pred cccc---cCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCc
Confidence 2210 00 0000000011 257788654 48999991 11 0122567777 4444443 456
Q ss_pred cccceEEEE-E------CCeEEEEEe
Q 020019 294 HRLATAATV-K------DGRVYLNHM 312 (332)
Q Consensus 294 ~~~pt~va~-~------~g~lyv~~~ 312 (332)
|+.|.++++ . .+.|.|.|.
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGNF 268 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGNF 268 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEeec
Confidence 899999987 2 478888554
No 101
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0014 Score=55.80 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=79.4
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~ 178 (332)
-+|++.|. .+|+.+++ ...|.--|+++-+....+++...+.+....|-+-.- ||.+|.--+...+|.|++|
T Consensus 133 GWgLt~d~--~~LimsdG------satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 133 GWGLTSDD--KNLIMSDG------SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred ceeeecCC--cceEeeCC------ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 47888886 45888875 345666688776655444442222234566777654 6889999999999999999
Q ss_pred C-CceEEEecCCCCCCc--ccccCccccCeEEEccCc-eEEEEeCCCCeEEEEe
Q 020019 179 K-GEFLSIISSPLFTPK--EWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKID 228 (332)
Q Consensus 179 ~-g~~~~~~~~~~~~~p--~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id 228 (332)
+ |+...+++-..+... .......-+||||+++++ ++|++--.=-.++.+.
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence 8 888887654333211 011234468999999998 9999754433455443
No 102
>PTZ00421 coronin; Provisional
Probab=97.66 E-value=0.071 Score=52.48 Aligned_cols=207 Identities=10% Similarity=0.069 Sum_probs=114.8
Q ss_pred cccceEEcC-CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDD-SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~-~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+++|++ +++++++...++.|..|+..++.......+....+. + -...+..++++|+.+.++++... .+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--g-H~~~V~~l~f~P~~~~iLaSgs~-----Dg 148 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--G-HTKKVGIVSFHPSAMNVLASAGA-----DM 148 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--C-CCCcEEEEEeCcCCCCEEEEEeC-----CC
Confidence 446789999 778777777789998888654321000000001111 0 01256789999863344444332 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.|.+||.++++....+.. . ....+++++.++|+++++-+..+.|..+|+. ++....+.... ....
T Consensus 149 tVrIWDl~tg~~~~~l~~--h---~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~ 214 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKC--H---SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKS 214 (493)
T ss_pred EEEEEECCCCeEEEEEcC--C---CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcc
Confidence 688999998876543321 1 2456789999999999998889999999976 44332221110 0112
Q ss_pred CeEEEccCc-eEEEEeC---CCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE-EEe--CCceEEEEc
Q 020019 204 NGIVYHPDG-FLIVIHT---FSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV-VAG--NPSARLVES 276 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~---~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~-va~--~~~~~~v~~ 276 (332)
..+.+.+++ .+..+-. ..+.|..+|+.... ......... ......-..++++++++ ++. ...+++...
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---~p~~~~~~d--~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---SPYSTVDLD--QSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---CceeEeccC--CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 356777777 4443322 34678778877542 123222221 11111123467786644 443 233444455
Q ss_pred CCC
Q 020019 277 SDG 279 (332)
Q Consensus 277 ~dg 279 (332)
.++
T Consensus 290 ~~~ 292 (493)
T PTZ00421 290 MNE 292 (493)
T ss_pred eCC
Confidence 555
No 103
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.65 E-value=0.08 Score=52.63 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=51.9
Q ss_pred eEEEeCCCCeEEEEEeCc----CCC--c----cceEEEEECCCCcEEEEEecCCCCC-----CCCCccceEECCCCc---
Q 020019 101 GLVLDHPRNRLLVVAADV----FGN--K----YSAVAAYDLSTWNRLFLTQLSGPSD-----GKSCADDVTVDAEGN--- 162 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~----~~~--~----~~~l~~~d~~~g~~~~~~~l~~~~~-----~~~~~ndiavd~dG~--- 162 (332)
.+.+|+++|.+|+....- ... . ...|..+|++||+.++.++.. |.+ ...-|.=+.++.+|+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~-~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT-PHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC-CCCCccccCCCCcEEEEeccCCcEEE
Confidence 579999989999987431 110 1 347889999999999887753 121 011221122224554
Q ss_pred EEEEeCCCCeEEEEcCC-CceE
Q 020019 163 AYVTDVTGSKIWKVGVK-GEFL 183 (332)
Q Consensus 163 lyvtd~~~~~I~~v~~~-g~~~ 183 (332)
+++.-..+|.+|.+|.. |+.+
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeCCCceEEEEECCCCcee
Confidence 66677778888888875 6653
No 104
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.072 Score=51.39 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=81.8
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~ 175 (332)
.....++|+..+|+++.... +...|+++|+++|+........ ......++.|||+ |+++-.. ...||.
T Consensus 201 ~~~p~wSpDG~~la~~s~~~---~~~~l~~~~l~~g~~~~l~~~~------g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQ---KRPRIFVQNLDTGRREQITNFE------GLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred eeeeeECCCCCEEEEEEcCC---CCCEEEEEECCCCCEEEccCCC------CCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 35667888744554443221 2347999999988765433221 1223588999985 6665433 447999
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCC
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFG 252 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~p 252 (332)
++.+++....+.... .......|+||| .||++... ..+||++++.++ ..+.+...+ ...
T Consensus 272 ~d~~~~~~~~lt~~~----------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-----~~~~lt~~~---~~~ 333 (430)
T PRK00178 272 MDLASRQLSRVTNHP----------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-----RAERVTFVG---NYN 333 (430)
T ss_pred EECCCCCeEEcccCC----------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-----CEEEeecCC---CCc
Confidence 998755333221111 122356899999 77765433 347999998876 334343322 122
Q ss_pred CeEEEeCCCe-EEEEe
Q 020019 253 DGLELLSPTK-LVVAG 267 (332)
Q Consensus 253 dGi~~~~dG~-l~va~ 267 (332)
....+.+||+ |+++.
T Consensus 334 ~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 334 ARPRLSADGKTLVMVH 349 (430)
T ss_pred cceEECCCCCEEEEEE
Confidence 3456778866 44443
No 105
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.60 E-value=0.028 Score=49.71 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=111.5
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.-+-+..+|+++|+...+...-+|-..+++. +. ++.... ...+.+.+|.+..+|..... ...+.
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lG--ty~GHt----GavW~~Did~~s~~liTGSA------D~t~k 77 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LG--TYDGHT----GAVWCCDIDWDSKHLITGSA------DQTAK 77 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCce----ee--eecCCC----ceEEEEEecCCcceeeeccc------cceeE
Confidence 4578889999999886555544444445541 11 221111 24677777776444433333 34467
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcE--EEEeCCCC---eEEEEcCCCce-EEEecCCCCCCcccccCcc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNA--YVTDVTGS---KIWKVGVKGEF-LSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~l--yvtd~~~~---~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~ 201 (332)
.||.++|+.+..+..+.+. ..+-++.+|++ +.+|-..| .|..++..... ...-+.+.+..|. ...
T Consensus 78 LWDv~tGk~la~~k~~~~V------k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~s 148 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPV------KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDS 148 (327)
T ss_pred EEEcCCCcEEEEeecCCee------EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Ccc
Confidence 7999999998877764333 35788888874 55665443 45555432110 0001111111110 113
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
-++-..|++-+.-+|+-...+.|.++|..++. +.+......-.....|.+.+|...|++..
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~------~~v~s~~~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGK------ELVDSDEEHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCc------eeeechhhhccccccccccCCcceEEecc
Confidence 46778899999566666778899999999872 12222111224567899999999999964
No 106
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.59 E-value=0.04 Score=49.31 Aligned_cols=185 Identities=13% Similarity=0.133 Sum_probs=114.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
|....-+-+|+. ++++..+.+...+|..+++. .. .+..+. .-+.+|.+.|.+++.||...- ...
T Consensus 147 ylScC~f~dD~~-ilT~SGD~TCalWDie~g~~----~~--~f~GH~----gDV~slsl~p~~~ntFvSg~c-----D~~ 210 (343)
T KOG0286|consen 147 YLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQ----TQ--VFHGHT----GDVMSLSLSPSDGNTFVSGGC-----DKS 210 (343)
T ss_pred eeEEEEEcCCCc-eEecCCCceEEEEEcccceE----EE--EecCCc----ccEEEEecCCCCCCeEEeccc-----ccc
Confidence 445566666654 44555566777888776652 11 232111 136788888855888887542 223
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc--CCCceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG--VKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~--~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
...||.+.+.-.+.+.- -.+-.|.+.+.|+|.-++|-+..+...-+| .|-++..+ ..+. ...+.
T Consensus 211 aklWD~R~~~c~qtF~g-----hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y-s~~~--------~~~gi 276 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEG-----HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY-SHDS--------IICGI 276 (343)
T ss_pred eeeeeccCcceeEeecc-----cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee-ccCc--------ccCCc
Confidence 45689998866554432 135678899999999999988777655555 44444433 2211 24578
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
+.++|+..|+|.++-+....+..+|.-.+ +.+..+. | +-+....+.+.|||.-+.++
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~----e~vg~L~--G-HeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG----ERVGVLA--G-HENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc----ceEEEee--c-cCCeeEEEEECCCCcEEEec
Confidence 99999999966666677777888877655 2333222 2 33556677777777655554
No 107
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.53 E-value=0.034 Score=48.99 Aligned_cols=188 Identities=12% Similarity=0.108 Sum_probs=109.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..+.++|..+|..+.....++.+..+..+.... .. .+... + -+..+.-++-++.+..++++..+ ...
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~----~~--~~~~~-g-h~~svdql~w~~~~~d~~atas~-----dk~ 88 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF----RK--ELVYR-G-HTDSVDQLCWDPKHPDLFATASG-----DKT 88 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhh----hh--hhccc-C-CCcchhhheeCCCCCcceEEecC-----Cce
Confidence 567899999998777665566655554443321 00 11110 0 01245567778776555655432 345
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
+.+||.+.++....+...+ .-.-++..|+|+-.+.-.....|--+|.... .. ..... ...-.|-
T Consensus 89 ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~-~~-~~~~~--------~~~e~ne 152 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTY-KI-VNEEQ--------FKFEVNE 152 (313)
T ss_pred EEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEeccc-ce-eehhc--------ccceeee
Confidence 7889999988876665421 1123666777654433334445555554311 11 11111 2345689
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
|++.-++.+|+...+.|+|-.+....- ++++.+... -..--.|.++|+|+-+.++..
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsL----kpv~si~AH---~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSL----KPVQSIKAH---PSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEecccc----ccccccccC---CcceEEEEECCCCceEeeccc
Confidence 999988899999998888765554433 245555532 244567888999998888754
No 108
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.04 Score=53.79 Aligned_cols=186 Identities=20% Similarity=0.322 Sum_probs=114.6
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+.+.++|+.+.....++.+..+...+.+. .....+..-.....++++.++ +...++... ...|.+
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~-----D~tiri 229 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSPD-GSYLLSGSD-----DKTLRI 229 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECCC-CcEEEEecC-----CceEEE
Confidence 367899999855555566666666543330 011111101126789999997 874444432 457889
Q ss_pred EECCC-CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 129 YDLST-WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~-g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
||.+. +..... +.+. ....+.+++.++|+++++-+..+.|...+.. |+....+... ..+.+++
T Consensus 230 wd~~~~~~~~~~--l~gH---~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----------s~~is~~ 294 (456)
T KOG0266|consen 230 WDLKDDGRNLKT--LKGH---STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH----------SDGISGL 294 (456)
T ss_pred eeccCCCeEEEE--ecCC---CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc----------CCceEEE
Confidence 99943 344332 3222 2566899999999999999998988888876 4555443221 2346799
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCC-CCCeEEEeCCCeEEEEe
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLS-FGDGLELLSPTKLVVAG 267 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~-~pdGi~~~~dG~l~va~ 267 (332)
++++||.++++....+.|..+|+.++... ..+.+... ... -..-+.+.++|+..++.
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~--~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGA--ENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCC--CCCCceeEEEECCCCcEEEEe
Confidence 99999955555577888989999877210 01222211 111 23567778888866664
No 109
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.52 E-value=0.0014 Score=61.72 Aligned_cols=203 Identities=12% Similarity=0.157 Sum_probs=129.8
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.+..+|+.|++...++.|--+|..+|+. .. .+.. +.-|..+.++|++.+++++.+. .++|.
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~----~~--~f~~-----~~~~~cvkf~pd~~n~fl~G~s-----d~ki~ 325 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQV----LS--RFHL-----DKVPTCVKFHPDNQNIFLVGGS-----DKKIR 325 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceE----EE--EEec-----CCCceeeecCCCCCcEEEEecC-----CCcEE
Confidence 4578999999999888889999999988872 22 2321 2257788899985588888652 46899
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEE-ecCCCCCCcccccCccccCe
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSI-ISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~-~~~~~~~~p~~~~~~~~~nG 205 (332)
.||.+++++++.+.- ....-+++.+-++|+-+|+.+....+...+-.-. .... .......- -.
T Consensus 326 ~wDiRs~kvvqeYd~-----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsm----------P~ 390 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDR-----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTM----------PC 390 (503)
T ss_pred EEeccchHHHHHHHh-----hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccC----------cc
Confidence 999999997654431 1356788999999988888776665555443311 1111 11111112 26
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEE---EEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCCceE
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKL---IRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWET 282 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~---v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~~ 282 (332)
|++.|.|..+.++...++|+-+..... ..-...+. .... +.+-.+.+.|||..+++++....+.+- +|++
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~-~r~nkkK~feGh~va----Gys~~v~fSpDG~~l~SGdsdG~v~~w--dwkt 463 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPP-FRLNKKKRFEGHSVA----GYSCQVDFSPDGRTLCSGDSDGKVNFW--DWKT 463 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccc-cccCHhhhhcceecc----CceeeEEEcCCCCeEEeecCCccEEEe--echh
Confidence 889999999999999999987765421 00001111 1222 356678888998888887654333222 2455
Q ss_pred EEEEee
Q 020019 283 AAVVAK 288 (332)
Q Consensus 283 ~~~~~~ 288 (332)
.++...
T Consensus 464 ~kl~~~ 469 (503)
T KOG0282|consen 464 TKLVSK 469 (503)
T ss_pred hhhhhc
Confidence 455443
No 110
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.50 E-value=0.0028 Score=62.56 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=70.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcC--------------CCccceEEEEECCCC-------cEEEEEecCCC-----------
Q 020019 98 GSLGLVLDHPRNRLLVVAADVF--------------GNKYSAVAAYDLSTW-------NRLFLTQLSGP----------- 145 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~--------------~~~~~~l~~~d~~~g-------~~~~~~~l~~~----------- 145 (332)
.|-+|.+++.++.+|++..... .+..+.|++|++..+ +...++.-..|
T Consensus 351 RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~ 430 (524)
T PF05787_consen 351 RPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKC 430 (524)
T ss_pred CccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcc
Confidence 5789999999899999975433 144578999998755 22111111100
Q ss_pred -CCCCCCccceEECCCCcEEEEeCC-CCe--EEEEcCCCceEEEecC---------CCCCCc-c--cccCccccCeEEEc
Q 020019 146 -SDGKSCADDVTVDAEGNAYVTDVT-GSK--IWKVGVKGEFLSIISS---------PLFTPK-E--WYKNLVGLNGIVYH 209 (332)
Q Consensus 146 -~~~~~~~ndiavd~dG~lyvtd~~-~~~--I~~v~~~g~~~~~~~~---------~~~~~p-~--~~~~~~~~nGi~~~ 209 (332)
......|..|++|++|+|||.+-. ... |.-+.++|+...+..+ +..... . ..+...-..|++|+
T Consensus 431 ~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fs 510 (524)
T PF05787_consen 431 DDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFS 510 (524)
T ss_pred cCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceEC
Confidence 112468999999999999986433 222 2333344432221100 000000 0 01123456899999
Q ss_pred cCc-eEEEEeC
Q 020019 210 PDG-FLIVIHT 219 (332)
Q Consensus 210 ~dG-~Lyva~~ 219 (332)
||| +|||.-+
T Consensus 511 pDg~tlFvniQ 521 (524)
T PF05787_consen 511 PDGRTLFVNIQ 521 (524)
T ss_pred CCCCEEEEEEe
Confidence 999 9998643
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.50 E-value=0.012 Score=51.44 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=96.2
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY 129 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~ 129 (332)
+.|-...+-++++..++.|.-||-.+++. . .-+..+. .+..+.+..+ |++. +..+ .+.|.-|
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~----v---~sL~~~s----~VtSlEvs~d-G~il-Tia~-----gssV~Fw 210 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTE----V---QSLEFNS----PVTSLEVSQD-GRIL-TIAY-----GSSVKFW 210 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcE----E---EEEecCC----CCcceeeccC-CCEE-EEec-----CceeEEe
Confidence 45555566677776778888888777762 1 2222221 5788999997 8744 3333 2357779
Q ss_pred ECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEE
Q 020019 130 DLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVY 208 (332)
Q Consensus 130 d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~ 208 (332)
|+++-.++..+.++ . ..+.-.+.|+..+||+-.....+|++|-+ |.-+...+..- +.....+.|
T Consensus 211 daksf~~lKs~k~P--~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh---------~gpVhcVrF 275 (334)
T KOG0278|consen 211 DAKSFGLLKSYKMP--C----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH---------FGPVHCVRF 275 (334)
T ss_pred ccccccceeeccCc--c----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC---------CCceEEEEE
Confidence 99887777666662 1 23345668887899998888999999966 44332222211 123478999
Q ss_pred ccCceEEEEeCCCCeEEEE
Q 020019 209 HPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 209 ~~dG~Lyva~~~~~~i~~i 227 (332)
+|||.+|.+-+..|+|.-+
T Consensus 276 SPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 276 SPDGELYASGSEDGTIRLW 294 (334)
T ss_pred CCCCceeeccCCCceEEEE
Confidence 9999999999988876433
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.022 Score=53.74 Aligned_cols=186 Identities=15% Similarity=0.179 Sum_probs=114.1
Q ss_pred cceEEcCCCCEEEEEecCC--eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCe-EEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVSFLDG--GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g--~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~~~ 124 (332)
.++-++|.-.++++.-.++ +|+.||-..... ++...+ ..+ .....++.++ |. ..++.. +..
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~----lqS~~l---~~f---Pi~~a~f~p~-G~~~i~~s~-----rrk 280 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK----LQSIHL---EKF---PIQKAEFAPN-GHSVIFTSG-----RRK 280 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChh----heeeee---ccC---ccceeeecCC-CceEEEecc-----cce
Confidence 4678899888887774345 567776443321 121111 111 2345677775 76 344332 345
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.++.||+.+.++....++.+ .......-+.|.+++++.+....+|.|+.+....+ .+. .+..+ ...
T Consensus 281 y~ysyDle~ak~~k~~~~~g--~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~-----s~Kie------G~v 347 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYG--VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT-----SFKIE------GVV 347 (514)
T ss_pred EEEEeeccccccccccCCCC--cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh-----eeeec------cEE
Confidence 68999999888766544432 12356777999999998888888999999887643 221 12111 235
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+++|+.|| .||++. ..|.||.+++.... .+.++.-.| .. .-.-++...+|.++.++..
T Consensus 348 ~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~----~~~rf~D~G-~v-~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASG-GTGEVYVWNLRQNS----CLHRFVDDG-SV-HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred eeEEEecCCcEEEEEc-CCceEEEEecCCcc----eEEEEeecC-cc-ceeeeeecCCCceEEeccC
Confidence 689999999 666654 56799999998762 333333222 11 2234666788886666543
No 113
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.41 E-value=0.038 Score=54.40 Aligned_cols=129 Identities=12% Similarity=0.020 Sum_probs=73.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe-----------------CCCCeEEEEcCC-CceEE
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD-----------------VTGSKIWKVGVK-GEFLS 184 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd-----------------~~~~~I~~v~~~-g~~~~ 184 (332)
.+.++.+|.++|++.+..+... .+++.++ +.+|+.. ...+.|+.+|.. |+.+
T Consensus 310 ~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~- 379 (488)
T cd00216 310 NGFFYVLDRTTGKLISARPEVE--------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV- 379 (488)
T ss_pred CceEEEEECCCCcEeeEeEeec--------cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-
Confidence 4679999999999988765421 1245555 6677742 135789999965 6633
Q ss_pred EecCCCCCCccccc--CccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe
Q 020019 185 IISSPLFTPKEWYK--NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK 262 (332)
Q Consensus 185 ~~~~~~~~~p~~~~--~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~ 262 (332)
+-. +......... .......++.. ++.||+.+ ..++|+.+|.++|+ .+-..++++.-...| +.+..+|+
T Consensus 380 W~~-~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~-~dG~l~ald~~tG~----~lW~~~~~~~~~a~P--~~~~~~g~ 450 (488)
T cd00216 380 WEK-REGTIRDSWNIGFPHWGGSLATA-GNLVFAGA-ADGYFRAFDATTGK----ELWKFRTPSGIQATP--MTYEVNGK 450 (488)
T ss_pred eEe-eCCccccccccCCcccCcceEec-CCeEEEEC-CCCeEEEEECCCCc----eeeEEECCCCceEcC--EEEEeCCE
Confidence 211 1110000000 00001123443 45899886 57889999999883 444455542122345 55566899
Q ss_pred EEEEeCCc
Q 020019 263 LVVAGNPS 270 (332)
Q Consensus 263 l~va~~~~ 270 (332)
+||+....
T Consensus 451 ~yv~~~~g 458 (488)
T cd00216 451 QYVGVMVG 458 (488)
T ss_pred EEEEEEec
Confidence 99997543
No 114
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.085 Score=46.94 Aligned_cols=168 Identities=11% Similarity=0.116 Sum_probs=109.3
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
.....|.+...-.-++++++|.+-.++...+.+|..++..+.- .++..++.+ .+-+..+++.|+....+++
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-------k~t~~~~~~--~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-------KYTIHEDSH--REWVSCVRFSPNESNPIIV 166 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-------EEEEecCCC--cCcEEEEEEcCCCCCcEEE
Confidence 3445566666666789999998888877778888888765332 123332211 2357889999965466777
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTP 193 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~ 193 (332)
... ....+.+||+++-+... .+. + ...+.|-+++.|||.+-.+-...+.++-.|.+ ++....++
T Consensus 167 s~s----~DktvKvWnl~~~~l~~--~~~--g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~------ 231 (315)
T KOG0279|consen 167 SAS----WDKTVKVWNLRNCQLRT--TFI--G-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE------ 231 (315)
T ss_pred Ecc----CCceEEEEccCCcchhh--ccc--c-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc------
Confidence 653 23457889998766543 231 2 25788999999999998887777888887765 45433221
Q ss_pred cccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 194 KEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.+...+.++|+|+.+..-+-+.+. |--+++++.
T Consensus 232 -----a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~ 264 (315)
T KOG0279|consen 232 -----AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESK 264 (315)
T ss_pred -----CCCeEeeEEecCCceeEeeccCCc-eEEEeccch
Confidence 233568999999983333333333 555666654
No 115
>PTZ00420 coronin; Provisional
Probab=97.39 E-value=0.18 Score=50.35 Aligned_cols=215 Identities=10% Similarity=0.052 Sum_probs=114.6
Q ss_pred EEEecCCccccceEEcCC-CCEEEEEecCCeEEEEECCCCCCC-ccceeeeEEecccCcCCCccceEEEeCCCCe-EEEE
Q 020019 38 YHYHSSSFFRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPP-GTVLEEVTLVKDLELTGNGSLGLVLDHPRNR-LLVV 114 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~-l~v~ 114 (332)
..+.+.......++|+|+ ++++++...++.|..|+..++... ....+....+. + -...+..++++|+ +. ++++
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~--g-H~~~V~sVaf~P~-g~~iLaS 143 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK--G-HKKKISIIDWNPM-NYYIMCS 143 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee--c-CCCcEEEEEECCC-CCeEEEE
Confidence 334444445678899997 677777777899988887543210 00000000111 1 0125678999996 54 3333
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTP 193 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~ 193 (332)
... .+.|..||+++++....+.. ......++++++|+++++....+.|..+|+. ++...-+.......
T Consensus 144 gS~-----DgtIrIWDl~tg~~~~~i~~------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 144 SGF-----DSFVNIWDIENEKRAFQINM------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred EeC-----CCeEEEEECCCCcEEEEEec------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 321 35688999998876543332 1345679999999988887778889999987 44332221110000
Q ss_pred cccccCccccCeEEEccCc-eEEEEeCCC---CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE--EEeC-CCeEEEE
Q 020019 194 KEWYKNLVGLNGIVYHPDG-FLIVIHTFS---GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL--ELLS-PTKLVVA 266 (332)
Q Consensus 194 p~~~~~~~~~nGi~~~~dG-~Lyva~~~~---~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi--~~~~-dG~l~va 266 (332)
. .....-..+++++ .|..+-... ++|..+|+.... ..+..+.... .+..+ ..|+ +|.+|++
T Consensus 213 ~-----s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~----~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 213 N-----TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDN----ASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred e-----eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecC----CccceEEeeeCCCCCEEEE
Confidence 0 0000011234677 555444432 367777877421 2344443321 11111 2344 4888888
Q ss_pred eC--CceEEEEcCCC
Q 020019 267 GN--PSARLVESSDG 279 (332)
Q Consensus 267 ~~--~~~~~v~~~dg 279 (332)
+. ..+++.....+
T Consensus 281 GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 281 GKGDGNCRYYQHSLG 295 (568)
T ss_pred EECCCeEEEEEccCC
Confidence 63 33454444444
No 116
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.36 E-value=0.12 Score=47.87 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=115.9
Q ss_pred eeEEEecC-----CccccceEEcCCCCEEEEE--ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC
Q 020019 36 HVYHYHSS-----SFFRECAKWDDSGRRFIVS--FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR 108 (332)
Q Consensus 36 ~~i~~~~~-----~~~pegia~d~~g~~~~~~--~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~ 108 (332)
..|.++.. ..++...++++||++.|+- .....|.+||...++ +.. -++-|+ ..++--.++
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k----vv~---ei~~PG-----C~~iyP~~~- 147 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK----VVG---EIDTPG-----CWLIYPSGN- 147 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE----EEE---EEEGTS-----EEEEEEEET-
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc----eee---eecCCC-----EEEEEecCC-
Confidence 34555542 2377888999999976654 345689999998776 222 222243 334443333
Q ss_pred CeEEEEEeCcCCCccceEEEEECC-CCcEEEEE-ecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCCCceEEE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLS-TWNRLFLT-QLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVKGEFLSI 185 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~-~g~~~~~~-~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~g~~~~~ 185 (332)
.+.+..+.+ +.+..+.+. .|++.+.. .+-.+.. ....+.-+... ++++|+. +..|.||.++..|....+
T Consensus 148 ~~F~~lC~D------Gsl~~v~Ld~~Gk~~~~~t~~F~~~~-dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 148 RGFSMLCGD------GSLLTVTLDADGKEAQKSTKVFDPDD-DPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp TEEEEEETT------SCEEEEEETSTSSEEEEEEEESSTTT-S-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEE
T ss_pred CceEEEecC------CceEEEEECCCCCEeEeeccccCCCC-cccccccceECCCCeEEEE-ecCCEEEEEeccCCcccc
Confidence 444555543 445555554 46655432 2211221 23333444444 4567775 567999998877664433
Q ss_pred ec-CCCCC----CcccccCccccCeEEEccCc-eEEEEeCC---------CCeEEEEeCCCCCCccceeEEEEecCCCCC
Q 020019 186 IS-SPLFT----PKEWYKNLVGLNGIVYHPDG-FLIVIHTF---------SGNLFKIDIVDGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 186 ~~-~~~~~----~p~~~~~~~~~nGi~~~~dG-~Lyva~~~---------~~~i~~id~~~~~~~~~~~~~v~~~g~~~~ 250 (332)
.. ...+. ...|. ..|-+-+++++.. +|||.-.. .-.||.+|++++ +.+.+++++.
T Consensus 220 ~~~~~~~t~~e~~~~Wr--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv~Ri~l~~---- 289 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWR--PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRVARIPLEH---- 289 (342)
T ss_dssp EEEEESS-HHHHHTTEE--E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEEEEEEEEE----
T ss_pred cCcccccCccccccCcC--CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEEEEEeCCC----
Confidence 21 11111 01121 2355678998765 99997542 236899999988 4777787652
Q ss_pred CCCeEEEeCCCe--EEEEeCC--ceEEEEcCCC
Q 020019 251 FGDGLELLSPTK--LVVAGNP--SARLVESSDG 279 (332)
Q Consensus 251 ~pdGi~~~~dG~--l~va~~~--~~~~v~~~dg 279 (332)
..+.|.+..|.+ ||.++.. ...+....+|
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 246899987755 6655533 2344455666
No 117
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.36 E-value=0.06 Score=51.92 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=87.5
Q ss_pred ceEEcCCCCEE-EEEe--cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRF-IVSF--LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~-~~~~--~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...|+|||+.+ ++.. .+..|+.++..+++. . .+...++. -....+.|+..+|+++.... +...
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-----~--~LT~~~~~----d~~p~~SPDG~~I~F~Sdr~---g~~~ 302 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-----T--QITNYPGI----DVNGNFVEDDKRIVFVSDRL---GYPN 302 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-----E--EcccCCCc----cCccEECCCCCEEEEEECCC---CCce
Confidence 36799999754 4432 245799999876652 1 22222211 12236788744677766432 2357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCC--------CeEEEEcCCCceEEEecCCCCCCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTG--------SKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~--------~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
|+++|+++|+..+...- + .. + ..++|||+ |.++.... ..|+.++.++...+.+....
T Consensus 303 Iy~~dl~~g~~~rlt~~---g--~~--~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~------ 368 (419)
T PRK04043 303 IFMKKLNSGSVEQVVFH---G--KN--N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG------ 368 (419)
T ss_pred EEEEECCCCCeEeCccC---C--Cc--C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC------
Confidence 99999998877543211 1 11 2 48899986 44433221 47999998754333322110
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCC--CeEEEEeCCCC
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFS--GNLFKIDIVDG 232 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~--~~i~~id~~~~ 232 (332)
......|+||| .|+++.... ..|+.+++++.
T Consensus 369 -----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 369 -----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred -----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 11236899999 676665433 35889998854
No 118
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.32 E-value=0.14 Score=48.26 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=93.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+.++.+++. |.-++...+ .+...-.|.++|.......-. .. .-.....+++|||.|+.+-+..+.|-.+|
T Consensus 305 ~V~~ls~h~t-geYllsAs~-----d~~w~Fsd~~~g~~lt~vs~~--~s-~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 305 PVTGLSLHPT-GEYLLSASN-----DGTWAFSDISSGSQLTVVSDE--TS-DVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cceeeeeccC-CcEEEEecC-----CceEEEEEccCCcEEEEEeec--cc-cceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 4578999996 663333221 233444577777655443321 00 12345689999999999988888888888
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
...... ...|+. .-.-...|.|+.+|+..++..+.+.|.-+|+..-+ ..+.+... .......+.+
T Consensus 376 lks~~~----~a~Fpg-----ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~----n~kt~~l~--~~~~v~s~~f 440 (506)
T KOG0289|consen 376 LKSQTN----VAKFPG-----HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK----NFKTIQLD--EKKEVNSLSF 440 (506)
T ss_pred cCCccc----cccCCC-----CCCceeEEEeccCceEEEEEecCCeEEEEEehhhc----ccceeecc--ccccceeEEE
Confidence 764321 122321 11124689999999555556667778889988542 35556554 2234567899
Q ss_pred eCCCeEEEEeCCceE
Q 020019 258 LSPTKLVVAGNPSAR 272 (332)
Q Consensus 258 ~~dG~l~va~~~~~~ 272 (332)
|..|+..+.......
T Consensus 441 D~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 441 DQSGTYLGIAGSDLQ 455 (506)
T ss_pred cCCCCeEEeecceeE
Confidence 988887777654433
No 119
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0053 Score=55.40 Aligned_cols=163 Identities=12% Similarity=0.160 Sum_probs=96.7
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc--CCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL--TGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
..++|+..++|||+.++++.-+|-|-+|+..+++.+.+ ..+.....+ ....+..|.+.+| -.+.....
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD----LkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGs----- 282 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD----LKYQAQDNFMMMDDAVLCISFSRD-SEMLASGS----- 282 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhh----hhhhhhcceeecccceEEEeeccc-HHHhhccC-----
Confidence 45999999999999777777789898888877764211 111111111 1135667777765 34333321
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceE-EEecCCCCCCcccccC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFL-SIISSPLFTPKEWYKN 199 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~-~~~~~~~~~~p~~~~~ 199 (332)
..+++.+|..++|+-.++++-. . ......+.+..|+.-..+.+....+.....+ ||.+ .+.+..
T Consensus 283 qDGkIKvWri~tG~ClRrFdrA--H--tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---------- 348 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRA--H--TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---------- 348 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhh--h--ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc----------
Confidence 2467888998888755444321 1 1234457788887656665555555444443 5532 121222
Q ss_pred ccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 200 LVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 200 ~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
...|-..|.+||.-+++.+..+.|-.++..+
T Consensus 349 -Syvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 349 -SYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred -ccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 3457788999995555556677776666554
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.15 Score=51.98 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=116.6
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCC-CCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDD-YPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..|.++++|..+++.-.+|.|.+++.... +.| ..+. ..+....+++... +++.++.. .+.+
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------~ti~---~~g~~v~~ia~~s--~~f~~~s~------~~tv 78 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------ETID---ISGELVSSIACYS--NHFLTGSE------QNTV 78 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------chhh---ccCceeEEEeecc--cceEEeec------cceE
Confidence 46899999997777777888999875433 110 1221 0122456777664 45455543 3457
Q ss_pred EEEECCCCcEE---EEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 127 AAYDLSTWNRL---FLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 127 ~~~d~~~g~~~---~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+|...+++.. .++.+ -.++++++.+|+..+.-+..-.|-.++.+ +.....+.. -..|
T Consensus 79 ~~y~fps~~~~~iL~Rftl--------p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg--h~ap-------- 140 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTL--------PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG--HDAP-------- 140 (933)
T ss_pred EEeeCCCCCccceeeeeec--------cceEEEEecCCcEEEeecCceeEEEEeccccchheeecc--cCCc--------
Confidence 77777666543 23333 24679999999877766665666666644 222222211 1112
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEE-ecCCCCCC-CCeEEEeCC-CeEEEEeCCceEEEEcCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIR-VAGGPLSF-GDGLELLSP-TKLVVAGNPSARLVESSDG 279 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~-~~g~~~~~-pdGi~~~~d-G~l~va~~~~~~~v~~~dg 279 (332)
.-+|.++|+|.+.+.-..+|+|+.++++++.... ....+. -.+..... -.-++..|+ |++.+..-...+.+....+
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~-tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK-TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhh-hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 3589999999766667788999999999763210 011111 00011111 123566787 7777776544456777888
Q ss_pred ceEEEE
Q 020019 280 WETAAV 285 (332)
Q Consensus 280 ~~~~~~ 285 (332)
|.....
T Consensus 220 we~~f~ 225 (933)
T KOG1274|consen 220 WELQFK 225 (933)
T ss_pred ceehee
Confidence 865443
No 121
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.015 Score=51.99 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=87.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC----CCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV----TGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~----~~~~ 172 (332)
...||+++|...+- |+.... +....++||++..+......- ..+..|-..-++.+||. ||.|+. ..|.
T Consensus 69 R~Hgi~~~p~~~ra-vafARr---PGtf~~vfD~~~~~~pv~~~s---~~~RHfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 69 RGHGIAFHPALPRA-VAFARR---PGTFAMVFDPNGAQEPVTLVS---QEGRHFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred ccCCeecCCCCcce-EEEEec---CCceEEEECCCCCcCcEEEec---ccCceeecccccCCCCcEEEeecCCCCCCCce
Confidence 34677777764442 222221 234567899987765443322 22356777778999997 788754 3567
Q ss_pred EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--C----CeEEEEeCCCCCC--------ccc
Q 020019 173 IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--S----GNLFKIDIVDGVG--------EGE 237 (332)
Q Consensus 173 I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~----~~i~~id~~~~~~--------~~~ 237 (332)
|-.+|.+.++.++-+-+.+ ..+|.-+.+.+|| +|.+++.+ + ++. +.++++-+. .++
T Consensus 142 iGvYd~r~~fqrvgE~~t~--------GiGpHev~lm~DGrtlvvanGGIethpdfgR~-~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTH--------GIGPHEVTLMADGRTLVVANGGIETHPDFGRT-ELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred EEEEecccccceecccccC--------CcCcceeEEecCCcEEEEeCCceecccccCcc-ccchhhcCccEEEEeccccc
Confidence 7777776555554333332 3578999999999 77777652 1 111 122221100 011
Q ss_pred eeEEEEecC-CCCCCCCeEEEeCCCeEEEEe
Q 020019 238 EIKLIRVAG-GPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 238 ~~~~v~~~g-~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++...++. .......-++.++||++|...
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 222222220 111245678899999999995
No 122
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.17 E-value=0.11 Score=49.03 Aligned_cols=164 Identities=17% Similarity=0.255 Sum_probs=80.4
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC----CCc---E-EEEeCCC--C--eEEEEcCC-CceEEEecC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA----EGN---A-YVTDVTG--S--KIWKVGVK-GEFLSIISS 188 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~----dG~---l-yvtd~~~--~--~I~~v~~~-g~~~~~~~~ 188 (332)
+.+.|++||++ |+.++.+.. .++|.+.+-- +|. | .+++... + +||+++++ |.+..+ ..
T Consensus 76 K~~GL~VYdL~-Gk~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v-~~ 146 (381)
T PF02333_consen 76 KKGGLYVYDLD-GKELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV-TD 146 (381)
T ss_dssp TTTEEEEEETT-S-EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE--CB
T ss_pred CCCCEEEEcCC-CcEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc-CC
Confidence 34678899986 555544432 2333332210 232 3 4566543 2 58889875 444332 22
Q ss_pred CCCCCcccccCccccCeEEEc---cCc--eEEEEeCCCCeEEEEeCC---CCCCccceeEEEEecCCCCCCCCeEEEeCC
Q 020019 189 PLFTPKEWYKNLVGLNGIVYH---PDG--FLIVIHTFSGNLFKIDIV---DGVGEGEEIKLIRVAGGPLSFGDGLELLSP 260 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~---~dG--~Lyva~~~~~~i~~id~~---~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d 260 (332)
+.. |. .....-+.|+|+- .+| ++++.. .++++..+.+. .++..++.++.+.++ +.+.|+++|..
T Consensus 147 ~~~--p~-~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe 218 (381)
T PF02333_consen 147 PAA--PI-ATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDE 218 (381)
T ss_dssp TTC---E-E-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETT
T ss_pred CCc--cc-ccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEecc
Confidence 111 10 0123346799984 246 444444 45777555443 233333456666654 46899999966
Q ss_pred -CeEEEEe-CCceEEEEcC-CCceEEEEEeeecCCCc-ccceEEEE
Q 020019 261 -TKLVVAG-NPSARLVESS-DGWETAAVVAKFSGPVH-RLATAATV 302 (332)
Q Consensus 261 -G~l~va~-~~~~~~v~~~-dg~~~~~~~~~~~~~~~-~~pt~va~ 302 (332)
|.||+++ +..+|.+... ++....+++....+..+ .-..++++
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlal 264 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLAL 264 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEE
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEE
Confidence 9999997 4556765432 22234455543333333 23466777
No 123
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.17 E-value=0.2 Score=46.35 Aligned_cols=150 Identities=12% Similarity=0.133 Sum_probs=88.5
Q ss_pred CCEEEEEe----cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC----CCccceEE
Q 020019 56 GRRFIVSF----LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF----GNKYSAVA 127 (332)
Q Consensus 56 g~~~~~~~----~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~----~~~~~~l~ 127 (332)
.++|+.+. -.++++.+|.++++. +. .++ .++ .+ .+.+++++..+|++..-.. +.+...|-
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~----lG---mi~-~g~---~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~ 70 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKL----LG---MID-TGF---LG-NVALSPDGKTIYVAETFYSRGTRGERTDVVE 70 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEE----EE---EEE-EES---SE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcE----EE---Eee-ccc---CC-ceeECCCCCEEEEEEEEEeccccccceeEEE
Confidence 45677662 146899999887762 22 221 122 22 3678888778998875322 12345688
Q ss_pred EEECCCCcEEEEEecCCC-CC-CCCCccceEECCCCc-EEEEeC-CCCeEEEEcCCCc-eEEEecCCCCCCcccccCccc
Q 020019 128 AYDLSTWNRLFLTQLSGP-SD-GKSCADDVTVDAEGN-AYVTDV-TGSKIWKVGVKGE-FLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~-~~-~~~~~ndiavd~dG~-lyvtd~-~~~~I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+||.++-++...+.++.. .. ....++-+++..||+ +||-+. ....|-.+|...+ ...-+..+.+
T Consensus 71 ~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----------- 139 (342)
T PF06433_consen 71 IWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----------- 139 (342)
T ss_dssp EEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-----------
T ss_pred EEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-----------
Confidence 899999888888888531 11 236789999999986 888775 4667999998754 4433333221
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
-+|-=.++.. +.+.=..|++..|.++
T Consensus 140 -~~iyP~~~~~-F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 140 -WLIYPSGNRG-FSMLCGDGSLLTVTLD 165 (342)
T ss_dssp -EEEEEEETTE-EEEEETTSCEEEEEET
T ss_pred -EEEEecCCCc-eEEEecCCceEEEEEC
Confidence 1222122223 3333456778777777
No 124
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.13 E-value=0.085 Score=49.71 Aligned_cols=139 Identities=23% Similarity=0.360 Sum_probs=73.4
Q ss_pred ccceEEE--eCCCCeEEEEEeCcCCCccceEEEEEC---CCCc----EEEEEecCCCCCCCCCccceEECCC-CcEEEEe
Q 020019 98 GSLGLVL--DHPRNRLLVVAADVFGNKYSAVAAYDL---STWN----RLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTD 167 (332)
Q Consensus 98 ~~~gi~v--d~~~g~l~v~~~~~~~~~~~~l~~~d~---~~g~----~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd 167 (332)
.+.|+++ ++.+|.+|+.-.+ +.+.+..|-+ ..|. +++.+.+. +-+-+|++|.. |.||+++
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~----k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~------sQ~EGCVVDDe~g~LYvgE 226 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNG----KDGRVEQYELTDDGDGKVSATLVREFKVG------SQPEGCVVDDETGRLYVGE 226 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEE----TTSEEEEEEEEE-TTSSEEEEEEEEEE-S------S-EEEEEEETTTTEEEEEE
T ss_pred cceeeEEeecCCCCcEEEEEec----CCceEEEEEEEeCCCCcEeeEEEEEecCC------CcceEEEEecccCCEEEec
Confidence 4778887 3445777876554 2334444433 3443 33444442 35678999987 7899999
Q ss_pred CCCCeEEEEcCC---CceEEEe---cCCCCCCcccccCccccCeEEEc--cC--ceEEEEeCCCCeEEEEeCCCCCCccc
Q 020019 168 VTGSKIWKVGVK---GEFLSII---SSPLFTPKEWYKNLVGLNGIVYH--PD--GFLIVIHTFSGNLFKIDIVDGVGEGE 237 (332)
Q Consensus 168 ~~~~~I~~v~~~---g~~~~~~---~~~~~~~p~~~~~~~~~nGi~~~--~d--G~Lyva~~~~~~i~~id~~~~~~~~~ 237 (332)
.. -.||+++.+ +...+.+ ....+.. -.-||++- .+ |+|++++.++++...++.+... .
T Consensus 227 E~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~a--------DvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~---~ 294 (381)
T PF02333_consen 227 ED-VGIWRYDAEPEGGNDRTLVASADGDGLVA--------DVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN---A 294 (381)
T ss_dssp TT-TEEEEEESSCCC-S--EEEEEBSSSSB-S---------EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-----
T ss_pred Cc-cEEEEEecCCCCCCcceeeeccccccccc--------CccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC---c
Confidence 76 689999875 2222222 1112221 23477773 34 4999999999988888877432 1
Q ss_pred eeEEEEec-CC---CCCCCCeEEEe
Q 020019 238 EIKLIRVA-GG---PLSFGDGLELL 258 (332)
Q Consensus 238 ~~~~v~~~-g~---~~~~pdGi~~~ 258 (332)
.+..+.+. +. ....+||+++.
T Consensus 295 ~~g~f~i~~~~~idg~~eTDG~~v~ 319 (381)
T PF02333_consen 295 YVGSFRIGDGGGIDGVSETDGIEVV 319 (381)
T ss_dssp EEEEEEEE--SSS----S---EEEE
T ss_pred ccceEEeccCCCccccccCCcceEE
Confidence 23333321 11 12457777775
No 125
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.12 E-value=0.15 Score=48.54 Aligned_cols=237 Identities=14% Similarity=0.068 Sum_probs=97.9
Q ss_pred EecCCeEEEEECCCCCCCccceeeeEEeccc-CcC---C-CccceEEEeCCCCeEEEEEeCcC-CCccceEEEEECCCCc
Q 020019 62 SFLDGGIGQVAVPDDYPPGTVLEEVTLVKDL-ELT---G-NGSLGLVLDHPRNRLLVVAADVF-GNKYSAVAAYDLSTWN 135 (332)
Q Consensus 62 ~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~gi~vd~~~g~l~v~~~~~~-~~~~~~l~~~d~~~g~ 135 (332)
.+..++||.+|..+.... ..-..+++ | +.. + ..|....--++ |+++|+..+.. .+..+.+..+|.++.+
T Consensus 94 gL~SsrIyviD~~~dPr~---P~l~KvIe-~~ev~~k~g~s~PHT~Hclp~-G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 94 GLRSSRIYVIDTKTDPRK---PRLHKVIE-PEEVFEKTGLSRPHTVHCLPD-GRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp BTTT--EEEEE--S-TTS----EEEEEE--HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred eeccCcEEEEECCCCCCC---CceEeeeC-HHHHHhhcCCCCCceeeecCC-ccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 388999999997643211 01113332 2 111 1 25666666675 98999876422 2345678899999888
Q ss_pred EEEEEecCCCCCCCCCccceEECCCCcEEEEe-CC-------------------CCeEEEEcCC-CceEEEecCCCCCCc
Q 020019 136 RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD-VT-------------------GSKIWKVGVK-GEFLSIISSPLFTPK 194 (332)
Q Consensus 136 ~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd-~~-------------------~~~I~~v~~~-g~~~~~~~~~~~~~p 194 (332)
+...++.. .....+..|+...|..|+-||. ++ ..++...|-. .+..+.++.+.-
T Consensus 169 v~g~We~~--~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--- 243 (461)
T PF05694_consen 169 VKGRWEKD--RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--- 243 (461)
T ss_dssp EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT---
T ss_pred ccceeccC--CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC---
Confidence 87777653 2235789999999998877764 32 3455555544 333433322100
Q ss_pred ccccCccccCeEE--EccCc-eEEEEeCCCCeEEEEeCC-CCCCccceeEEEEe---cCC---CC--------CCCCeEE
Q 020019 195 EWYKNLVGLNGIV--YHPDG-FLIVIHTFSGNLFKIDIV-DGVGEGEEIKLIRV---AGG---PL--------SFGDGLE 256 (332)
Q Consensus 195 ~~~~~~~~~nGi~--~~~dG-~Lyva~~~~~~i~~id~~-~~~~~~~~~~~v~~---~g~---~~--------~~pdGi~ 256 (332)
...|--|- .+|+- +=||....+.+||+|-.+ .+.-+.+.+-.+.. .+- ++ +-+..|.
T Consensus 244 -----g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 244 -----GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp -----EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred -----CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 00111122 34555 778888888889888764 33211112222211 111 11 2356777
Q ss_pred EeCC-CeEEEEeC--CceEEEEcCCCceEEEEEeeecCC--------------C-cccceEEEE--ECCeEEEEEecC
Q 020019 257 LLSP-TKLVVAGN--PSARLVESSDGWETAAVVAKFSGP--------------V-HRLATAATV--KDGRVYLNHMLG 314 (332)
Q Consensus 257 ~~~d-G~l~va~~--~~~~~v~~~dg~~~~~~~~~~~~~--------------~-~~~pt~va~--~~g~lyv~~~~g 314 (332)
+..| --|||++. +..|.....|... -++...+..+ . ...|--+.. ++.||||++.+-
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~-Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLy 395 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFN-PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLY 395 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS--EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE----
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCC-CcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeecc
Confidence 7766 45999984 3456655555412 2333222110 0 112333444 789999976554
No 126
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.10 E-value=0.058 Score=50.42 Aligned_cols=183 Identities=19% Similarity=0.207 Sum_probs=110.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-C-eEEEEEeCcCCCccce
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-N-RLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g-~l~v~~~~~~~~~~~~ 125 (332)
-+..++.++..+++..+.|.+-.++..+... .. ++....+ ...++.++|.. + .|--|..| +.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~----~~--~l~gH~~----~v~~~~fhP~~~~~~lat~s~D------gt 242 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNL----LQ--TLRGHTS----RVGAAVFHPVDSDLNLATASAD------GT 242 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcce----eE--EEecccc----ceeeEEEccCCCccceeeeccC------Cc
Confidence 3567899999999888888877777655542 12 3432221 46688888862 3 33333333 23
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC--CeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG--SKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~--~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..|+.++-+++ -++.+. ..+...+++.|+|....|.+.. -++|-+...-+....-+ .-.+.
T Consensus 243 vklw~~~~e~~l--~~l~gH---~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-----------Hs~~v 306 (459)
T KOG0272|consen 243 VKLWKLSQETPL--QDLEGH---LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-----------HSKGV 306 (459)
T ss_pred eeeeccCCCcch--hhhhcc---hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-----------ccccc
Confidence 444555543333 233221 2567789999999988887653 45555544322211111 12356
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+|+|.+||.|..+-....-=..+|+.++. .+. -+.| .....-+++++|+|-...++..
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----~im--~L~g-H~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGR----CIM--FLAG-HIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCc----EEE--Eecc-cccceeeEeECCCceEEeecCC
Confidence 799999999888776544322235777762 232 2332 5566779999999999888643
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.07 E-value=0.082 Score=50.74 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=118.7
Q ss_pred eEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 37 VYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
-|.+.....-...+++|+.|..|++...+-.|.-||..+-... +...+.+ .|. .+...+.+.+.+..+.+.++.+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--~~~fr~l--~P~-E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--MRSFRQL--QPC-ETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--chhhhcc--Ccc-cccccceeeecCCCCeEEEEec
Confidence 3444333334556899999999998866778888887643321 1110011 122 1224577888886445555554
Q ss_pred CcCCCccceEEEEECCCCcEEEEE-------ecCCCCCCCCCccceEECCCC-cEEEEeCCCCe--EEEEcCCCceEEEe
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLT-------QLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSK--IWKVGVKGEFLSII 186 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~-------~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~--I~~v~~~g~~~~~~ 186 (332)
. +...+||-...+..... ++..-..-....++..+.|+. +.|+|.+..+. ||-++..-+.+.++
T Consensus 235 ~------aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 235 S------AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred C------cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 2 34455665432322211 111100012456778888985 58888887664 55554332333333
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCC--CCCeEEEeCCCeEE
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLS--FGDGLELLSPTKLV 264 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~--~pdGi~~~~dG~l~ 264 (332)
.. .... .....+.-.+|++||.++.+--..|.|..++...-.. .+...+. .++.+ ....|.|..||+.+
T Consensus 309 k~-k~~~----g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v--~p~~~vk--~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 309 KT-KPAG----GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV--RPVMKVK--DAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred ee-ccCC----CcccCceeeecCCCcchhhhcccCCceeeeecCCccc--ccceEee--eccCCCCceeEEEeccccchh
Confidence 21 1111 1234578899999998888888889998887653211 1222222 12223 46689999999998
Q ss_pred EEeC
Q 020019 265 VAGN 268 (332)
Q Consensus 265 va~~ 268 (332)
.+..
T Consensus 380 lSRg 383 (641)
T KOG0772|consen 380 LSRG 383 (641)
T ss_pred hhcc
Confidence 8864
No 128
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.06 E-value=0.0052 Score=60.73 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=48.8
Q ss_pred CccccCeEEEccCc-eEEEEeCCCC-------------------eEEEEeCCCCCCccc--eeEEEEecC----------
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSG-------------------NLFKIDIVDGVGEGE--EIKLIRVAG---------- 246 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~-------------------~i~~id~~~~~~~~~--~~~~v~~~g---------- 246 (332)
.+..|-||+++|.. .+|++.+.++ +|+|++++....... ....+...|
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 35678899999986 9999987655 899999875411111 111222211
Q ss_pred -----CCCCCCCeEEEeCCCeEEEEeC
Q 020019 247 -----GPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 247 -----~~~~~pdGi~~~~dG~l~va~~ 268 (332)
..+..||+|+++++|+||+++.
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD 454 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQED 454 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeC
Confidence 2367899999999999999963
No 129
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.11 Score=49.52 Aligned_cols=210 Identities=19% Similarity=0.141 Sum_probs=102.2
Q ss_pred cccceEEcCCCCEEEEEec------CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 46 FRECAKWDDSGRRFIVSFL------DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~------~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
.|+-+---++|+++++.+. .|.+..+|.++.+ +.. .|.. +.....-.+.+-..+. .++.|+.....
T Consensus 131 ~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~----v~g--~We~-~~~~~~~gYDfw~qpr-~nvMiSSeWg~ 202 (461)
T PF05694_consen 131 RPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE----VKG--RWEK-DRGPQPFGYDFWYQPR-HNVMISSEWGA 202 (461)
T ss_dssp EEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT------EEE--E--S-B-TT------EEEETT-TTEEEE-B---
T ss_pred CCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc----ccc--eecc-CCCCCCCCCCeEEcCC-CCEEEEeccCC
Confidence 7777778899999988743 2568888866443 222 3432 1111113467888885 55566654321
Q ss_pred C---------------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEE--CCCCc-EEEEeCCCCeEEEEcC--C
Q 020019 120 G---------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV--DAEGN-AYVTDVTGSKIWKVGV--K 179 (332)
Q Consensus 120 ~---------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiav--d~dG~-lyvtd~~~~~I~~v~~--~ 179 (332)
+ .=...|.+||.++.+.++.+++. .....|-.+.+ +|+.+ -|++......||++-. +
T Consensus 203 P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg---~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 203 PSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG---EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred hhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC---CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 0 01247999999999999999983 22234444544 55543 6888888889988754 3
Q ss_pred Cc--eEEEecCCCCC-----Ccccc----cCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC-
Q 020019 180 GE--FLSIISSPLFT-----PKEWY----KNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG- 246 (332)
Q Consensus 180 g~--~~~~~~~~~~~-----~p~~~----~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g- 246 (332)
|+ +..++.-+..+ -|... ....-+..|.++-|. .|||+++..|.|.++|.+++.. ...+-.+.+.|
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~-Pkl~gqv~lGG~ 358 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN-PKLVGQVFLGGS 358 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS--EEEEEEE-BTT
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC-CcEEeEEEECcE
Confidence 43 22222111100 01000 001236788899998 9999999999999999986421 01233333332
Q ss_pred -----------CCC-CCCCeEEEeCCCe-EEEEe
Q 020019 247 -----------GPL-SFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 247 -----------~~~-~~pdGi~~~~dG~-l~va~ 267 (332)
..+ ++|.=|.+.-||+ |||++
T Consensus 359 ~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 359 IRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 122 3678888888865 99997
No 130
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.04 E-value=0.01 Score=56.15 Aligned_cols=195 Identities=15% Similarity=0.087 Sum_probs=123.9
Q ss_pred eEEEecCCccccceEEcC-CCCEEEEEecCCeEEEEECCC-CCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 37 VYHYHSSSFFRECAKWDD-SGRRFIVSFLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~-~g~~~~~~~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
++.+.+..-....+-|-| .+.|+++..-++.|+.++.-+ +.. + +++...- ..+..+....+ |+=+.+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~----l--rtf~gH~----k~Vrd~~~s~~-g~~fLS 275 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC----L--RTFKGHR----KPVRDASFNNC-GTSFLS 275 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce----e--hhhhcch----hhhhhhhcccc-CCeeee
Confidence 344444333334455666 677887776678887776544 321 1 1333111 24567788775 765555
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC-CceEEEecCCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK-GEFLSIISSPLFT 192 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~ 192 (332)
..- ...|..||.++|+......+ ...|+.+-+.|++ +++++-...+.|..+|.. |++.+-+..
T Consensus 276 ~sf-----D~~lKlwDtETG~~~~~f~~------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---- 340 (503)
T KOG0282|consen 276 ASF-----DRFLKLWDTETGQVLSRFHL------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR---- 340 (503)
T ss_pred eec-----ceeeeeeccccceEEEEEec------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----
Confidence 432 24577899999999877765 3567788999997 899999889999999975 554332221
Q ss_pred CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 193 PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+...+-|.|-++|.-+|+.+....+..++-..+. .++.+.-. ....-| .+.+.|+|..+.+.+.
T Consensus 341 ------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v----~ik~i~~~-~~hsmP-~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 341 ------HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV----PIKNIADP-EMHTMP-CLTLHPNGKWFAAQSM 405 (503)
T ss_pred ------hhhheeeeEEccCCceEeeeccCccEEEEEcCCCc----cchhhcch-hhccCc-ceecCCCCCeehhhcc
Confidence 22346789999999888888877766555555441 23333222 122344 5888899998888643
No 131
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.04 E-value=0.01 Score=57.61 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=71.0
Q ss_pred ccceEEEeCCCCeEEEEEeCcC-----------CCccceEEEEECCCC-------cEEEEEecCCCCC--C---------
Q 020019 98 GSLGLVLDHPRNRLLVVAADVF-----------GNKYSAVAAYDLSTW-------NRLFLTQLSGPSD--G--------- 148 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~-----------~~~~~~l~~~d~~~g-------~~~~~~~l~~~~~--~--------- 148 (332)
.|.+|++++..+.+|++..... .+..+.|++|-+.++ +...+..-..|.. .
T Consensus 418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~ 497 (616)
T COG3211 418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN 497 (616)
T ss_pred CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence 5789999998889999976533 134578999987765 2222222111111 1
Q ss_pred -CCCccceEECCCCcEEEEeCCC-----C---eEE-EEcCC---CceEEEecCCCCCCcccccCccccCeEEEccCc-eE
Q 020019 149 -KSCADDVTVDAEGNAYVTDVTG-----S---KIW-KVGVK---GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FL 214 (332)
Q Consensus 149 -~~~~ndiavd~dG~lyvtd~~~-----~---~I~-~v~~~---g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~L 214 (332)
-..|.+|++|+.|+|||..-++ + .++ ...++ |+..+++..+. ..-..|.||+||| +|
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~---------g~E~tG~~FspD~~Tl 568 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPI---------GCEFTGPCFSPDGKTL 568 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCC---------cceeecceeCCCCceE
Confidence 1349999999999999864322 1 222 22233 33444433221 2345799999999 99
Q ss_pred EEEeCCCC
Q 020019 215 IVIHTFSG 222 (332)
Q Consensus 215 yva~~~~~ 222 (332)
||.-..-+
T Consensus 569 FV~vQHPG 576 (616)
T COG3211 569 FVNVQHPG 576 (616)
T ss_pred EEEecCCC
Confidence 99866543
No 132
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.01 E-value=0.0065 Score=58.97 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=72.0
Q ss_pred CccccCeEEEccCc-eEEEEeCCCC----------------eEEEEeCCCCCCccce--eEEEEecC-------------
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSG----------------NLFKIDIVDGVGEGEE--IKLIRVAG------------- 246 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~----------------~i~~id~~~~~~~~~~--~~~v~~~g------------- 246 (332)
.+..|-+|++.|.- .+|++.++++ +|+|+-+.++.-+++. -..+...|
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 34578899999885 9999988654 6888877754111111 11111111
Q ss_pred --CCCCCCCeEEEeCCCeEEEEeCCc-----e-----EEEEcCCCceEEEEEeeecCCCcccceEEEE--ECCeEEEE
Q 020019 247 --GPLSFGDGLELLSPTKLVVAGNPS-----A-----RLVESSDGWETAAVVAKFSGPVHRLATAATV--KDGRVYLN 310 (332)
Q Consensus 247 --~~~~~pdGi~~~~dG~l~va~~~~-----~-----~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~~g~lyv~ 310 (332)
..+..||+|++|+.|+||++...+ . ..+..+++ +++++...+..|..-.-++.+| ++++|||+
T Consensus 495 ~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p-~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 495 NANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDP-KTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred ccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCC-ccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 114459999999999999996321 1 22445666 7778887776654344577888 56799983
No 133
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=96.99 E-value=0.008 Score=44.26 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=27.1
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~ 230 (332)
++..||||++++|+ .|||++...+.|+.+...
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34678999999999 999999999998776543
No 134
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.89 E-value=0.12 Score=47.61 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=103.0
Q ss_pred ceeEEEecC-----Cccccce-EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccce-EEEeCC
Q 020019 35 THVYHYHSS-----SFFRECA-KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLG-LVLDHP 107 (332)
Q Consensus 35 ~~~i~~~~~-----~~~pegi-a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-i~vd~~ 107 (332)
...+++... -.+|..| ++-=..+.+++.+. ..||..|..+-+. ++ +...-|. .+.| +++.++
T Consensus 70 Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Le-e~IyIydI~~Mkl----Lh--TI~t~~~----n~~gl~AlS~n 138 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLE-ESIYIYDIKDMKL----LH--TIETTPP----NPKGLCALSPN 138 (391)
T ss_pred EEEEEcccCceEEEEecCCceEEEEEccceEEEEEc-ccEEEEeccccee----eh--hhhccCC----CccceEeeccC
Confidence 556666532 2366554 34434455666653 4599999876552 23 2211111 3343 334444
Q ss_pred CCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEE-c-CCCceEEE
Q 020019 108 RNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKV-G-VKGEFLSI 185 (332)
Q Consensus 108 ~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v-~-~~g~~~~~ 185 (332)
.+.-|++..+.. ..+.|..||..+-+....+.- . ......++++++|.+..|.+..|.|.|+ . ++|+...-
T Consensus 139 ~~n~ylAyp~s~--t~GdV~l~d~~nl~~v~~I~a---H--~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 139 NANCYLAYPGST--TSGDVVLFDTINLQPVNTINA---H--KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred CCCceEEecCCC--CCceEEEEEcccceeeeEEEe---c--CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 455687765422 356799999987666655543 1 2455679999999999999999988774 3 55654322
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
+.-... | ...-.|+|++|+.+..+...+.+|..|.++
T Consensus 212 FRRG~~--~------~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 212 FRRGTY--P------VSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eeCCce--e------eEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 222111 2 345789999999766667778887666555
No 135
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.87 E-value=0.039 Score=53.69 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=87.2
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.+|.+|++|++. ...+++++..+++. . ...+.| . ....+.+..|-. |+|||... ..++
T Consensus 168 ~aLv~D~~g~lWvgT--~dGL~~fd~~~gka----l---ql~s~~-~-dk~I~al~~d~q-g~LWVGTd-------qGv~ 228 (671)
T COG3292 168 VALVFDANGRLWVGT--PDGLSYFDAGRGKA----L---QLASPP-L-DKAINALIADVQ-GRLWVGTD-------QGVY 228 (671)
T ss_pred eeeeeeccCcEEEec--CCcceEEccccceE----E---EcCCCc-c-hhhHHHHHHHhc-CcEEEEec-------cceE
Confidence 457888888877755 35688998877652 1 222111 1 124567777874 99999974 3477
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
.++.++.+. .--++.-+....+-+..|.+|.+||.....-.+++. ++.. ..+...+. .......|++.
T Consensus 229 ~~e~~G~~~----sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l-~rq~-Lq~~~~~~------~l~~S~vnsL~ 296 (671)
T COG3292 229 LQEAEGWRA----SNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRL-PRQG-LQIPLSKM------HLGVSTVNSLW 296 (671)
T ss_pred EEchhhccc----cccCCCCcchheeeeecccCCCEEEeecccceeEec-CCCC-cccccccc------CCcccccccee
Confidence 777764221 110111112345557778899999986433233333 3322 12111111 12345679999
Q ss_pred EccCceEEEEeCCCCeEEEEeCC
Q 020019 208 YHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 208 ~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
.|.||.||+... +.|+++...
T Consensus 297 ~D~dGsLWv~t~--~giv~~~~a 317 (671)
T COG3292 297 LDTDGSLWVGTY--GGIVRYLTA 317 (671)
T ss_pred eccCCCEeeecc--CceEEEecc
Confidence 999999999764 457777655
No 136
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.84 E-value=0.57 Score=49.04 Aligned_cols=186 Identities=11% Similarity=0.120 Sum_probs=105.9
Q ss_pred cceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
.+++|.+. ++.+++...++.|..||..+++. .. .+.... ....++.+++.++.++++... .+.+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~----~~--~~~~H~----~~V~~l~~~p~~~~~L~Sgs~-----Dg~v 600 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQL----VT--EMKEHE----KRVWSIDYSSADPTLLASGSD-----DGSV 600 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeE----EE--EecCCC----CCEEEEEEcCCCCCEEEEEcC-----CCEE
Confidence 35667664 55555556689999999775541 11 221111 257889998744665555432 3568
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEEC-CCCcEEEEeCCCCeEEEEcCCC-c-eEEEecCCCCCCcccccCcccc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD-AEGNAYVTDVTGSKIWKVGVKG-E-FLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd-~dG~lyvtd~~~~~I~~v~~~g-~-~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
..||.++++....+.. ......+.+. ++|+.+++-+..+.|+.+|... + ....+.. .....
T Consensus 601 ~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----------h~~~V 664 (793)
T PLN00181 601 KLWSINQGVSIGTIKT------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----------HSKTV 664 (793)
T ss_pred EEEECCCCcEEEEEec------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC----------CCCCE
Confidence 8999988776544332 1223446663 4688888888889999988752 2 1111110 11234
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCC--ccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVG--EGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~--~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
..+.|. ++..+++-...+.|..+++..+.. ....+..+ .+ .......++++++|.++++..
T Consensus 665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--~g-h~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--MG-HTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--cC-CCCCeeEEEEcCCCCEEEEEe
Confidence 577886 564444555667777777753210 00122222 21 223445688888887777753
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.31 Score=44.28 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=112.2
Q ss_pred cccceEEcCCCCEEEEEec-CCeE--EEEECCC-CCCCccceeeeEEecccCcCCC-c--cceEEEeCCCCeEEEEEeCc
Q 020019 46 FRECAKWDDSGRRFIVSFL-DGGI--GQVAVPD-DYPPGTVLEEVTLVKDLELTGN-G--SLGLVLDHPRNRLLVVAADV 118 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~-~g~I--~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~-~--~~gi~vd~~~g~l~v~~~~~ 118 (332)
+|.-+++.||-+-+++... ...| |+.+..+ |..+ +..+.+ ..-.+... . ...+-+.. +-.|+....
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~---~~~v~~-D~~~f~~kh~v~~i~iGiA~--~~k~imsas- 206 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS---HHFVHI-DNLEFERKHQVDIINIGIAG--NAKYIMSAS- 206 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC---cccccc-cccccchhcccceEEEeecC--CceEEEEec-
Confidence 7888999999988887744 3444 4544322 2211 010001 00111111 1 12233333 334655543
Q ss_pred CCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEE----EcCCCceEEEecCCCCCCc
Q 020019 119 FGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWK----VGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 119 ~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~----v~~~g~~~~~~~~~~~~~p 194 (332)
....|..|+++ |+.+..++.. +....+.++.|+|++..+......|.+ +..+|++..+.. .|.-.
T Consensus 207 ---~dt~i~lw~lk-Gq~L~~idtn-----q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r--vf~Lk 275 (420)
T KOG2096|consen 207 ---LDTKICLWDLK-GQLLQSIDTN-----QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR--VFSLK 275 (420)
T ss_pred ---CCCcEEEEecC-Cceeeeeccc-----cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh--hheec
Confidence 24578899998 8887766542 356678999999998777665554433 556776543311 12111
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeE--EEEeCCCCCC-ccceeEEEEec-CCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNL--FKIDIVDGVG-EGEEIKLIRVA-GGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i--~~id~~~~~~-~~~~~~~v~~~-g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
....+..-.||+++.+-.++-+..|++ |-.|..-..- +....+....+ ....+.|--+++.|.|.++.+...+
T Consensus 276 ---GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs 352 (420)
T KOG2096|consen 276 ---GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS 352 (420)
T ss_pred ---cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC
Confidence 123456678888887555555555544 3333321100 00111211111 0122467789999999988887554
Q ss_pred -eEEEEcCCC
Q 020019 271 -ARLVESSDG 279 (332)
Q Consensus 271 -~~~v~~~dg 279 (332)
..+.-..+|
T Consensus 353 ~l~~~~se~g 362 (420)
T KOG2096|consen 353 DLKVFASEDG 362 (420)
T ss_pred ceEEEEcccC
Confidence 333445556
No 138
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.81 E-value=0.11 Score=49.89 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=92.0
Q ss_pred ceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...|.|+. ..|++...+|++..|+..+.+. ++.++. .+.... ..+...+++++ |.++.+... .+.
T Consensus 273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------q~qVik~k~~~g~Rv~~tsC~~nrd-g~~iAagc~-----DGS 340 (641)
T KOG0772|consen 273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------QLQVIKTKPAGGKRVPVTSCAWNRD-GKLIAAGCL-----DGS 340 (641)
T ss_pred ccccccCcccceEEecCCCcEEEEecCCchh------heeEEeeccCCCcccCceeeecCCC-cchhhhccc-----CCc
Confidence 34566664 3566777788877777665543 123442 122111 25677889997 887555432 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
|..|+..+..+....-+.....++.-...|++..||+...+-...+.+-..|.. .+.+-.. ..+ +...--
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~--tgL------~t~~~~ 412 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR--TGL------PTPFPG 412 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh--cCC------CccCCC
Confidence 888997443322222221112223456679999999988887776665555543 2222111 111 122334
Q ss_pred CeEEEccCceEEEEeCC------CCeEEEEeCCC
Q 020019 204 NGIVYHPDGFLIVIHTF------SGNLFKIDIVD 231 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~------~~~i~~id~~~ 231 (332)
...+|+||..|+++-+. .+.++.++..+
T Consensus 413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred CccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 57889999988877552 45677776654
No 139
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.76 E-value=0.092 Score=53.08 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=111.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..-.++++.=||.-+.....|.|-++..+.|-. +-.+-..|. -...+.|+++|.- |++.|+... .+-
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------r~sf~~~~a-h~~~V~gla~D~~-n~~~vsa~~-----~Gi 516 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------RKSFGDSPA-HKGEVTGLAVDGT-NRLLVSAGA-----DGI 516 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCee------ecccccCcc-ccCceeEEEecCC-CceEEEccC-----cce
Confidence 334577888899888777789999998887742 112321121 1125689999995 887877642 345
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc-eEE-EecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE-FLS-IISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~-~~~-~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||.+...+....++. .....+.......+++..-..=.|..+|...+ ..+ +.. .....
T Consensus 517 lkfw~f~~k~l~~~l~l~------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-----------h~nri 579 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRLG------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-----------HGNRI 579 (910)
T ss_pred EEEEecCCcceeeeeccC------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-----------cccce
Confidence 677898876665555552 23344555554334444333445666665432 221 111 12357
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|.++|+||| +|..+. ..++|..+|+.++. .+-.+.++ ..+-.|.+.|+|.+..+.
T Consensus 580 td~~FS~DgrWlisas-mD~tIr~wDlpt~~----lID~~~vd----~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISAS-MDSTIRTWDLPTGT----LIDGLLVD----SPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eeeEeCCCCcEEEEee-cCCcEEEEeccCcc----eeeeEecC----CcceeeEECCCCCEEEEE
Confidence 899999999 555554 56789899998873 34334333 234567777887766663
No 140
>PTZ00421 coronin; Provisional
Probab=96.71 E-value=0.72 Score=45.50 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=93.3
Q ss_pred cccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....++|+|++ +++++...++.|..+|..+++. .. .+.... .....+.++++ |.++++.. ..+
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~----~~--~l~~h~----~~V~sla~spd-G~lLatgs-----~Dg 190 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----VE--VIKCHS----DQITSLEWNLD-GSLLCTTS-----KDK 190 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE----EE--EEcCCC----CceEEEEEECC-CCEEEEec-----CCC
Confidence 34568899986 5666667789999999876652 11 221111 25688999996 77655543 245
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe----CCCCeEEEEcCCC--ceEEEecCCCCCCccccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD----VTGSKIWKVGVKG--EFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd----~~~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~ 198 (332)
.|.+||+++++....... .. ......+.+.++++.+++- +..+.|..+|... +........
T Consensus 191 ~IrIwD~rsg~~v~tl~~--H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--------- 257 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEA--HA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD--------- 257 (493)
T ss_pred EEEEEECCCCcEEEEEec--CC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC---------
Confidence 788999998886544332 11 1223345666776555542 2245666666541 111111100
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
......-..+++|+ .||++-.+.+.|..+++.++
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 01122234688999 77777666788888888766
No 141
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.42 Score=49.05 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=46.4
Q ss_pred cCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 42 SSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 42 ~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
......-|++++|..=+.++++..|.|.-||..=++. ++ .|..+. ..+.|+.+++. +-+||+.+|
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl----i~--rFdeHd----GpVRgv~FH~~-qplFVSGGD 71 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL----ID--RFDEHD----GPVRGVDFHPT-QPLFVSGGD 71 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhH----Hh--hhhccC----CccceeeecCC-CCeEEecCC
Confidence 3344667899999988888889999999998764442 22 232221 14689999995 888998765
No 142
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.68 E-value=1.1 Score=47.05 Aligned_cols=163 Identities=8% Similarity=0.083 Sum_probs=96.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++|+++|+++++...++.|..++............ ........ .....++..++..+...++.. ..+.
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~-~~~~~~~~--~~~v~~l~~~~~~~~~las~~-----~Dg~ 556 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIH-YPVVELAS--RSKLSGICWNSYIKSQVASSN-----FEGV 556 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccc-cceEEecc--cCceeeEEeccCCCCEEEEEe-----CCCe
Confidence 345689999999887777789998888643110000000 00000000 113567777764344333332 1356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+..||.++++......- . ......+++++ +++++++-+..+.|..+|.. ++....+... ...
T Consensus 557 v~lWd~~~~~~~~~~~~--H---~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-----------~~v 620 (793)
T PLN00181 557 VQVWDVARSQLVTEMKE--H---EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-----------ANI 620 (793)
T ss_pred EEEEECCCCeEEEEecC--C---CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-----------CCe
Confidence 88999988776543321 1 24567899986 68888888888888888865 3332222111 123
Q ss_pred CeEEEc-cCceEEEEeCCCCeEEEEeCCCC
Q 020019 204 NGIVYH-PDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 204 nGi~~~-~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
..+.+. ++|.++++-..++.|+.+|+...
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 466774 45766666677889999998754
No 143
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=96.64 E-value=0.13 Score=47.14 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=83.2
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-cc-C---------cCCCccceEEEe---CCCCe
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DL-E---------LTGNGSLGLVLD---HPRNR 110 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~-~---------~~~~~~~gi~vd---~~~g~ 110 (332)
++..++..+++|++++++.....|++|++.+++. .|.- .+ . +. .-....+- +++++
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I--------~W~lgG~~~~df~~~~~~f~--~QHdar~~~~~~~~~~ 213 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI--------IWRLGGKRNSDFTLPATNFS--WQHDARFLNESNDDGT 213 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcE--------EEEeCCCCCCcccccCCcEe--eccCCEEeccCCCCCE
Confidence 4677899999999777777789999999887761 2331 11 0 11 11222332 22367
Q ss_pred EEEEEeCcC-----CCccceEEEEECCCCcEEEEEecC-CCCCCC-CCccceEECCCCcEEEEeCCCCeEEEEcCCCceE
Q 020019 111 LLVVAADVF-----GNKYSAVAAYDLSTWNRLFLTQLS-GPSDGK-SCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL 183 (332)
Q Consensus 111 l~v~~~~~~-----~~~~~~l~~~d~~~g~~~~~~~l~-~~~~~~-~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~ 183 (332)
+-+-++... ....+.++.+|+++.+.....+.. .+..-. .....+..-|+|+++|+....+++..++++|+..
T Consensus 214 IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv 293 (299)
T PF14269_consen 214 ISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVV 293 (299)
T ss_pred EEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECCCCCEE
Confidence 777776311 123567888999876655444443 222111 3445566778899999999999999999999864
No 144
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.62 E-value=0.65 Score=43.85 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=69.1
Q ss_pred EeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCce
Q 020019 104 LDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEF 182 (332)
Q Consensus 104 vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~ 182 (332)
++.+ |++|+... .+.++.+|+++++.++...+.. .....++-++..+|+||+++... .+|.+|+ +|+.
T Consensus 65 ~~~d-g~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~ 133 (370)
T COG1520 65 ADGD-GTVYVGTR------DGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTL 133 (370)
T ss_pred EeeC-CeEEEecC------CCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecccc-eEEEEECCCCcE
Confidence 5554 99999854 3579999999998776554421 12344445555599999998765 9999999 6875
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.-...... . + ..... ++-.++.+|+.. ..+.++.++.+++
T Consensus 134 ~W~~~~~~-~-~------~~~~~-~v~~~~~v~~~s-~~g~~~al~~~tG 173 (370)
T COG1520 134 VWSRNVGG-S-P------YYASP-PVVGDGTVYVGT-DDGHLYALNADTG 173 (370)
T ss_pred EEEEecCC-C-e------EEecC-cEEcCcEEEEec-CCCeEEEEEccCC
Confidence 53332222 0 1 01112 334467777765 5677888888776
No 145
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.59 E-value=0.023 Score=55.20 Aligned_cols=145 Identities=20% Similarity=0.194 Sum_probs=89.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
....+.+|.+ |++||+..+ .+++||..+++....... |- ....|.++.|-.|++||... ..|++.+
T Consensus 166 ~V~aLv~D~~-g~lWvgT~d-------GL~~fd~~~gkalql~s~--~~--dk~I~al~~d~qg~LWVGTd--qGv~~~e 231 (671)
T COG3292 166 PVVALVFDAN-GRLWVGTPD-------GLSYFDAGRGKALQLASP--PL--DKAINALIADVQGRLWVGTD--QGVYLQE 231 (671)
T ss_pred cceeeeeecc-CcEEEecCC-------cceEEccccceEEEcCCC--cc--hhhHHHHHHHhcCcEEEEec--cceEEEc
Confidence 3567888885 999999763 588999988876543221 11 14567788899999999753 4677888
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
+.|....-.. +.+ | ....+-+.-|.+|++|+.... | ++|..+..... .....+.. ...+...++..
T Consensus 232 ~~G~~~sn~~-~~l--p-----~~~I~ll~qD~qG~lWiGTen-G-l~r~~l~rq~L---q~~~~~~~-l~~S~vnsL~~ 297 (671)
T COG3292 232 AEGWRASNWG-PML--P-----SGNILLLVQDAQGELWIGTEN-G-LWRTRLPRQGL---QIPLSKMH-LGVSTVNSLWL 297 (671)
T ss_pred hhhccccccC-CCC--c-----chheeeeecccCCCEEEeecc-c-ceeEecCCCCc---cccccccC-Cccccccceee
Confidence 7773221111 111 1 112345556667899998643 3 44555543311 12212221 23456678999
Q ss_pred eCCCeEEEEeCCc
Q 020019 258 LSPTKLVVAGNPS 270 (332)
Q Consensus 258 ~~dG~l~va~~~~ 270 (332)
|.+|.||+..+..
T Consensus 298 D~dGsLWv~t~~g 310 (671)
T COG3292 298 DTDGSLWVGTYGG 310 (671)
T ss_pred ccCCCEeeeccCc
Confidence 9999999998664
No 146
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.59 E-value=0.4 Score=44.30 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=89.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccc-eEECCC-CcEEEE---eCCCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADD-VTVDAE-GNAYVT---DVTGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~nd-iavd~d-G~lyvt---d~~~~~ 172 (332)
....+.++. .||.|+-.+ .+++||+++-++...++... ..|.+ +|+.++ ++-|++ +...|.
T Consensus 89 ~IL~VrmNr--~RLvV~Lee-------~IyIydI~~MklLhTI~t~~-----~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 89 SILAVRMNR--KRLVVCLEE-------SIYIYDIKDMKLLHTIETTP-----PNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEEcc--ceEEEEEcc-------cEEEEecccceeehhhhccC-----CCccceEeeccCCCCceEEecCCCCCce
Confidence 456777775 799999763 59999999877766554421 22332 444554 344553 455788
Q ss_pred EEEEcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCC-CCCCccceeEEEEecCCCCC
Q 020019 173 IWKVGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV-DGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 173 I~~v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~-~~~~~~~~~~~v~~~g~~~~ 250 (332)
|+.+|...- ....++.. ......|+|++||++..+-+..|+|.|+-.. .| +.+.++.-+ ....
T Consensus 155 V~l~d~~nl~~v~~I~aH----------~~~lAalafs~~G~llATASeKGTVIRVf~v~~G----~kl~eFRRG-~~~~ 219 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAH----------KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG----QKLYEFRRG-TYPV 219 (391)
T ss_pred EEEEEcccceeeeEEEec----------CCceeEEEECCCCCEEEEeccCceEEEEEEcCCc----cEeeeeeCC-ceee
Confidence 988887632 22222211 1234689999999999999999999876543 44 355555432 2223
Q ss_pred CCCeEEEeCCCeEEEEe
Q 020019 251 FGDGLELLSPTKLVVAG 267 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~ 267 (332)
....+++++++.+..+.
T Consensus 220 ~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEEEEECCCCCeEEEe
Confidence 45678899998866664
No 147
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.58 E-value=0.69 Score=43.68 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=92.6
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCcc-ceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 52 WDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 52 ~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
++.+|++|+. ..+|+|+.++++++.. .|........... .++..+ + |++|+.+.+ +.++.+|
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~g~~--------~W~~~~~~~~~~~~~~~~~~-~-G~i~~g~~~------g~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDTGLV--------KWSYPLLGAVAQLSGPILGS-D-GKIYVGSWD------GKLYALD 127 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCCCcE--------EecccCcCcceeccCceEEe-C-CeEEEeccc------ceEEEEE
Confidence 7777877765 4578999999988761 3432111000112 233444 4 999999863 3799999
Q ss_pred CCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCC-CCCcccccCccccCeEEE
Q 020019 131 LSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPL-FTPKEWYKNLVGLNGIVY 208 (332)
Q Consensus 131 ~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~-~~~p~~~~~~~~~nGi~~ 208 (332)
.++|++.+...... . ..-.+-++-.++.+|+.. ..+.++.++.+ |+..-....+. .. ........
T Consensus 128 ~~~G~~~W~~~~~~--~--~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~-------~~~~~~~~- 194 (370)
T COG1520 128 ASTGTLVWSRNVGG--S--PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLS-------LSIYGSPA- 194 (370)
T ss_pred CCCCcEEEEEecCC--C--eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccc-------cccccCce-
Confidence 98999988777643 0 111223444567788875 66899999988 76543222211 11 11111222
Q ss_pred ccCceEEEEeCC-CCeEEEEeCCCCC
Q 020019 209 HPDGFLIVIHTF-SGNLFKIDIVDGV 233 (332)
Q Consensus 209 ~~dG~Lyva~~~-~~~i~~id~~~~~ 233 (332)
..++.+|+.... ++.++.+++.+++
T Consensus 195 ~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 195 IASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eecceEEEecCCCcceEEEEEccCCc
Confidence 456788888664 5589999998773
No 148
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.55 E-value=0.014 Score=36.37 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.9
Q ss_pred cCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEe
Q 020019 210 PDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELL 258 (332)
Q Consensus 210 ~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~ 258 (332)
||| +||+++...++|..||+.++ ..+..+... ..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~----~~~~~i~vg----~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN----KVIATIPVG----GYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC----eEEEEEECC----CCCceEEeC
Confidence 567 89999999999999999866 255656653 578888874
No 149
>smart00284 OLF Olfactomedin-like domains.
Probab=96.52 E-value=0.4 Score=42.72 Aligned_cols=144 Identities=18% Similarity=0.140 Sum_probs=82.1
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCC--------CCCccceEECCCC--cEEEEeCCCCe--EEEE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDG--------KSCADDVTVDAEG--NAYVTDVTGSK--IWKV 176 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~--------~~~~ndiavd~dG--~lyvtd~~~~~--I~~v 176 (332)
|.||.--.. ...|.+||++++.+.....|+...-. ...-=|+|+|.+| -||-|....+. |.|+
T Consensus 84 gslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkL 158 (255)
T smart00284 84 GSLYFNKFN-----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKL 158 (255)
T ss_pred ceEEEEecC-----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEee
Confidence 788885432 35699999999887655556421100 1122479999999 13445544454 4589
Q ss_pred cCCCc-eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeC---CCCeE-EEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 177 GVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHT---FSGNL-FKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 177 ~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~---~~~~i-~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
|++.- ....++..... ....|.+.+. |.||++++ ...+| +.+|+.+++. ....+.++ .....
T Consensus 159 np~tL~ve~tW~T~~~k-------~sa~naFmvC--GvLY~~~s~~~~~~~I~yayDt~t~~~---~~~~i~f~-n~y~~ 225 (255)
T smart00284 159 NPATLTIENTWITTYNK-------RSASNAFMIC--GILYVTRSLGSKGEKVFYAYDTNTGKE---GHLDIPFE-NMYEY 225 (255)
T ss_pred CcccceEEEEEEcCCCc-------ccccccEEEe--eEEEEEccCCCCCcEEEEEEECCCCcc---ceeeeeec-ccccc
Confidence 88642 33334332111 1223555555 89999985 34455 6788876631 22223443 12233
Q ss_pred CCeEEEeC-CCeEEEEeCCc
Q 020019 252 GDGLELLS-PTKLVVAGNPS 270 (332)
Q Consensus 252 pdGi~~~~-dG~l~va~~~~ 270 (332)
-.-|...| |.+||+-+++.
T Consensus 226 ~s~l~YNP~d~~LY~wdng~ 245 (255)
T smart00284 226 ISMLDYNPNDRKLYAWNNGH 245 (255)
T ss_pred ceeceeCCCCCeEEEEeCCe
Confidence 34466665 68899998875
No 150
>PTZ00420 coronin; Provisional
Probab=96.51 E-value=1.1 Score=44.99 Aligned_cols=158 Identities=11% Similarity=-0.002 Sum_probs=89.5
Q ss_pred cccceEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
....++|+|++..++ +...++.|..||..+++. .. .+. .+ ..+..+.++++ |.++++... .+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~----~~--~i~-~~----~~V~Slswspd-G~lLat~s~-----D~ 189 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR----AF--QIN-MP----KKLSSLKWNIK-GNLLSGTCV-----GK 189 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----EE--EEe-cC----CcEEEEEECCC-CCEEEEEec-----CC
Confidence 456789999987655 446689999999876652 11 221 11 25678999996 887766542 35
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccce---EECCCCcEEEEeCCC----CeEEEEcCC--CceEEEecCCCCCCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDV---TVDAEGNAYVTDVTG----SKIWKVGVK--GEFLSIISSPLFTPKE 195 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndi---avd~dG~lyvtd~~~----~~I~~v~~~--g~~~~~~~~~~~~~p~ 195 (332)
.+.+||+++++......- +.. ......+ .+.++++.+++-... ..|...|.. ++.+.......
T Consensus 190 ~IrIwD~Rsg~~i~tl~g--H~g-~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~----- 261 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHI--HDG-GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN----- 261 (568)
T ss_pred EEEEEECCCCcEEEEEec--ccC-CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-----
Confidence 689999999877643322 111 1011111 123666666553322 256666654 33332211100
Q ss_pred cccCccccCeEEEccC-ceEEEEeCCCCeEEEEeCCCC
Q 020019 196 WYKNLVGLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~ 232 (332)
..++---.++++ |.+|++-.+.+.|+-++...+
T Consensus 262 ----~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 262 ----ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ----CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 001101134444 688888888888888887655
No 151
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.40 E-value=1 Score=43.60 Aligned_cols=138 Identities=11% Similarity=0.067 Sum_probs=72.9
Q ss_pred EEEeCCCCe----EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC--CCCeEE
Q 020019 102 LVLDHPRNR----LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV--TGSKIW 174 (332)
Q Consensus 102 i~vd~~~g~----l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~--~~~~I~ 174 (332)
-+..|+ |+ +|++... +...|++.++++|+......+++ .....++.|||+ |.++-. +...+|
T Consensus 190 P~wSPD-G~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g------~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 190 PTWMHI-GSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQG------NQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred ceEccC-CCceEEEEEEccC----CCceEEEEECCCCCceEeecCCC------CccceEECCCCCEEEEEECCCCCccee
Confidence 367786 43 2344432 24579999999887665554421 122468999995 655442 333555
Q ss_pred E--EcCC----CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEec
Q 020019 175 K--VGVK----GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 175 ~--v~~~----g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
. ++.+ |+..++.... .......+|+||| .|+++... ..+||+++++... ...+.+...
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~----------~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~~~~~lt~~ 325 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEA----------FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---QSPRLLTKK 325 (428)
T ss_pred EEEeecccCCCCcceEeecCC----------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---cceEEeccC
Confidence 5 3332 2333322111 0112356999999 66665433 3478988876321 123323221
Q ss_pred CCCCCCCCeEEEeCCCe-EEEE
Q 020019 246 GGPLSFGDGLELLSPTK-LVVA 266 (332)
Q Consensus 246 g~~~~~pdGi~~~~dG~-l~va 266 (332)
........+.|||+ |+++
T Consensus 326 ---~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 326 ---YRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred ---CCCccceeECCCCCEEEEE
Confidence 11223456888877 4444
No 152
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.32 E-value=0.38 Score=48.31 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=109.7
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCcc-ceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..|..+.|+.++++++..++.+.-|+.++... .+. .- .+..| +.+.+.| +|. |++.... ++.++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~--------~V~-y~--GH~~PVwdV~F~P-~Gy-YFatas~--D~tAr 518 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC--------LVI-YK--GHLAPVWDVQFAP-RGY-YFATASH--DQTAR 518 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeeccccee--------EEE-ec--CCCcceeeEEecC-Cce-EEEecCC--Cceee
Confidence 35788999988888777778887777765542 111 11 12333 5677888 476 6555421 23555
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|+..|- .++++.+. ...+-.+.+.++|+.+...|.+....|...|.- |...++..... ....
T Consensus 519 LWs~d~--~~PlRifa-----ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----------~~V~ 581 (707)
T KOG0263|consen 519 LWSTDH--NKPLRIFA-----GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----------GPVT 581 (707)
T ss_pred eeeccc--CCchhhhc-----ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC----------CceE
Confidence 554443 34433221 112344568999998766776666655555532 44344332111 1246
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.++++|+|.-.++-...+.|.-+|+.+++ .+..+. + +.+..+.|.+..||++++++..
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~--~-Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANGS----LVKQLK--G-HTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCCc----chhhhh--c-ccCceeEEEEecCCCEEEecCC
Confidence 89999999444455567778888888763 232222 1 2355678999999999999743
No 153
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.31 E-value=0.13 Score=48.09 Aligned_cols=183 Identities=11% Similarity=0.114 Sum_probs=104.8
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
--++|.|+|+.+.+...+.+=.-+|..++. | .+... + =..++.++++.++ |-|..+.+ .. ..+ .
T Consensus 265 s~VafHPsG~~L~TasfD~tWRlWD~~tk~------E--lL~QE-G-Hs~~v~~iaf~~D-GSL~~tGG-lD--~~~--R 328 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASFDSTWRLWDLETKS------E--LLLQE-G-HSKGVFSIAFQPD-GSLAATGG-LD--SLG--R 328 (459)
T ss_pred eeeeecCCCceeeecccccchhhcccccch------h--hHhhc-c-cccccceeEecCC-CceeeccC-cc--chh--h
Confidence 357888888877665555544444544443 1 12211 1 0136889999997 88655532 11 122 3
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
+||+++|.-+.+..= . ..-..+++++|+|-...|.+..+.+-..|...+-.. +.-|+ ...-...+.
T Consensus 329 vWDlRtgr~im~L~g--H---~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l------y~ipA---H~nlVS~Vk 394 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAG--H---IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL------YTIPA---HSNLVSQVK 394 (459)
T ss_pred eeecccCcEEEEecc--c---ccceeeEeECCCceEEeecCCCCcEEEeeecccccc------eeccc---ccchhhheE
Confidence 689999986654321 1 123457999999988888888776555554433111 11111 112346899
Q ss_pred EccC-ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 208 YHPD-GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 208 ~~~d-G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|+|+ |...++....+++--+...+. +.++.+.. .-...-.+.+.+|+..+++.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~----~~~ksLaG---He~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTW----SPLKSLAG---HEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCc----ccchhhcC---CccceEEEEeccCCceEEEe
Confidence 9985 577777777776644444444 23433321 11334456666777766665
No 154
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.27 E-value=0.7 Score=46.00 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-C--------ccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-N--------GSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
+|.+|+++. .+.|+.+|..+++. .|..++.... . ...|+++.. +++|++.. .+.
T Consensus 69 ~g~vyv~s~-~g~v~AlDa~TGk~--------lW~~~~~~~~~~~~~~~~~~~~rg~av~~--~~v~v~t~------dg~ 131 (527)
T TIGR03075 69 DGVMYVTTS-YSRVYALDAKTGKE--------LWKYDPKLPDDVIPVMCCDVVNRGVALYD--GKVFFGTL------DAR 131 (527)
T ss_pred CCEEEEECC-CCcEEEEECCCCce--------eeEecCCCCcccccccccccccccceEEC--CEEEEEcC------CCE
Confidence 456665543 57899999988862 3432222110 0 124567764 78998865 357
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCC-CceE
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVK-GEFL 183 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~-g~~~ 183 (332)
|+.+|.++|++.+...+...........-.++. +|.+|+..+. .+.|+.+|.. |+.+
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 999999999998876653211111111222332 4578887542 5789999975 6643
No 155
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.11 E-value=0.44 Score=44.74 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=95.9
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
-+.|+||.+-+++...+-.+..+|.+++... ... +...+.++...+.-|| |.-+|+... ...+..
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~-------~~y--~~~~~~S~~sc~W~pD-g~~~V~Gs~-----dr~i~~ 338 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLR-------HLY--PSGLGFSVSSCAWCPD-GFRFVTGSP-----DRTIIM 338 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhh-------hhc--ccCcCCCcceeEEccC-CceeEecCC-----CCcEEE
Confidence 4789999886666554556888998888641 222 1212346778888887 776777542 345778
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEE-EecCCCCCCcccccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLS-IISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~-~~~~~~~~~p~~~~~~~~~nGi 206 (332)
||++..... .++- .......|+++.+||. +|..+ ....|..++...+.-+ ... ..-....+
T Consensus 339 wdlDgn~~~-~W~g----vr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lis-----------e~~~its~ 401 (519)
T KOG0293|consen 339 WDLDGNILG-NWEG----VRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLIS-----------EEQPITSF 401 (519)
T ss_pred ecCCcchhh-cccc----cccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhcccc-----------ccCceeEE
Confidence 998743322 2211 1124678999999996 44433 4455666655433222 111 11234688
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
+++.||.+...+.....|.-+|++..
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecchh
Confidence 99999988888888999988988843
No 156
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.07 E-value=0.78 Score=42.77 Aligned_cols=233 Identities=17% Similarity=0.186 Sum_probs=117.3
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEE-----eCCCCeEEEEEeCcC
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVL-----DHPRNRLLVVAADVF 119 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v-----d~~~g~l~v~~~~~~ 119 (332)
.+.-.++|+|||..+.+..-+|+|.-+||.+++.. . ..+...- ....+|+. ++. .+.++...
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~----g-~~l~gH~----K~It~Lawep~hl~p~-~r~las~s--- 224 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI----G-RALRGHK----KWITALAWEPLHLVPP-CRRLASSS--- 224 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcc----c-ccccCcc----cceeEEeecccccCCC-ccceeccc---
Confidence 46668999999998877777899999999887621 0 0111000 13344444 343 44333332
Q ss_pred CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCceEEEe-------c----
Q 020019 120 GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEFLSII-------S---- 187 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~~~~~-------~---- 187 (332)
+.+.+.+||.+.++.+. .+.+. ......+....+| +..+-+....|-..+. +|+..+.+ +
T Consensus 225 --kDg~vrIWd~~~~~~~~--~lsgH---T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVR--TLSGH---TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred --CCCCEEEEEccCceEEE--EeccC---ccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 45678899998776553 33221 1233446666565 5555566665555443 25432211 0
Q ss_pred -------CCCCCCccc---------ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCC
Q 020019 188 -------SPLFTPKEW---------YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSF 251 (332)
Q Consensus 188 -------~~~~~~p~~---------~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~ 251 (332)
...|..... ...+...+-++ ...|+-.|+-.+...++-+++...+ +.+.+. -| +...
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~-~~~~erlVSgsDd~tlflW~p~~~k---kpi~rm--tg-Hq~l 369 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL-KDSGERLVSGSDDFTLFLWNPFKSK---KPITRM--TG-HQAL 369 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhh-ccCcceeEEecCCceEEEecccccc---cchhhh--hc-hhhh
Confidence 011110000 00000111111 1123566777778888877766321 122211 11 2344
Q ss_pred CCeEEEeCCCeEEEEeCC--ceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 252 GDGLELLSPTKLVVAGNP--SARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 252 pdGi~~~~dG~l~va~~~--~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
..-+.+.|||+++++... +.++-.-.+| +.+..+++ -...-..+++ .+-||.|+
T Consensus 370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tG----k~lasfRG-Hv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFDKSVKLWDGRTG----KFLASFRG-HVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eeeEEECCCccEEEEeecccceeeeeCCCc----chhhhhhh-ccceeEEEEeccCccEEEE
Confidence 567889999877666533 2232233344 55554442 1222244677 56677764
No 157
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.01 E-value=1.6 Score=42.15 Aligned_cols=139 Identities=15% Similarity=0.245 Sum_probs=84.3
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
...|++.+++ ..+|+.... ...+..|+ ..++++...+..|. ....++|-| ....-+..|+-+.+|
T Consensus 370 elwgla~hps-~~q~~T~gq-----dk~v~lW~--~~k~~wt~~~~d~~------~~~~fhpsg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 370 ELWGLATHPS-KNQLLTCGQ-----DKHVRLWN--DHKLEWTKIIEDPA------ECADFHPSG-VVAVGTATGRWFVLD 434 (626)
T ss_pred ceeeEEcCCC-hhheeeccC-----cceEEEcc--CCceeEEEEecCce------eEeeccCcc-eEEEeeccceEEEEe
Confidence 5789999997 555665542 23466677 45777766664343 247788888 666667778888888
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeE--EEEeCCCCCCccceeEEEE-ecCCCCCCCC
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIR-VAGGPLSFGD 253 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~-~~g~~~~~pd 253 (332)
.+.+........ ....+-+.++||| .|-++.. ++.| ||++.... ...++. -.| ....
T Consensus 435 ~e~~~lv~~~~d----------~~~ls~v~ysp~G~~lAvgs~-d~~iyiy~Vs~~g~-----~y~r~~k~~g---s~it 495 (626)
T KOG2106|consen 435 TETQDLVTIHTD----------NEQLSVVRYSPDGAFLAVGSH-DNHIYIYRVSANGR-----KYSRVGKCSG---SPIT 495 (626)
T ss_pred cccceeEEEEec----------CCceEEEEEcCCCCEEEEecC-CCeEEEEEECCCCc-----EEEEeeeecC---ceeE
Confidence 775433222211 1235789999999 6666654 5555 56655533 233332 122 2234
Q ss_pred eEEEeCCCeEEEEeCCc
Q 020019 254 GLELLSPTKLVVAGNPS 270 (332)
Q Consensus 254 Gi~~~~dG~l~va~~~~ 270 (332)
-+...+|++.++++...
T Consensus 496 hLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 496 HLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EeeecCCCceEEeccCc
Confidence 55666888888887544
No 158
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.97 E-value=0.99 Score=45.53 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCccceEECCCCc--EEEEe------CCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC
Q 020019 150 SCADDVTVDAEGN--AYVTD------VTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF 220 (332)
Q Consensus 150 ~~~ndiavd~dG~--lyvtd------~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~ 220 (332)
......++.+||+ +|+.. .....||..+.+|....+.....+.. -.|+||| .||+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~------------PsWspDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTR------------PSWSLDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCC------------ceECCCCCceEEEecC
Confidence 4678899999985 45552 23457888887665544332222223 3688987 77776432
Q ss_pred CCeEEEEeCCCCCCccceeEEEEecCC----C-CCCCCeEEEeCCCe-EEEEeCCceE---EEEcCCCceEEEEEeeec-
Q 020019 221 SGNLFKIDIVDGVGEGEEIKLIRVAGG----P-LSFGDGLELLSPTK-LVVAGNPSAR---LVESSDGWETAAVVAKFS- 290 (332)
Q Consensus 221 ~~~i~~id~~~~~~~~~~~~~v~~~g~----~-~~~pdGi~~~~dG~-l~va~~~~~~---~v~~~dg~~~~~~~~~~~- 290 (332)
+++.++.-..++ ..+..+.+.+. . -..+..+.+.+||+ +.+.-..... +++..+| . .++.....
T Consensus 418 -~~~~~v~~~~~~---gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G-~-~~l~~~~~l 491 (591)
T PRK13616 418 -NTVVRVIRDPAT---GQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDG-Q-YALTNPREV 491 (591)
T ss_pred -cceEEEeccCCC---ceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCC-c-eeecccEEe
Confidence 223333221110 01211111110 0 12356677777766 3332222222 2444556 2 23322111
Q ss_pred CCCccc-ceEEEE-ECCeEEEE
Q 020019 291 GPVHRL-ATAATV-KDGRVYLN 310 (332)
Q Consensus 291 ~~~~~~-pt~va~-~~g~lyv~ 310 (332)
.+.+.. ++.+.+ .+++|+|.
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred ecccCCccccceEecCCEEEEE
Confidence 122333 467778 78888874
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.99 Score=41.10 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=94.4
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEE-EEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLL-VVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~-v~~~~~~~~~~~~l 126 (332)
.++.|+++|+.++++..+..|.-+|.-.+.. ..+..+ +. ...+...+|.+.+.. ++... ....+
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs~----l~rirf---~s----pv~~~q~hp~k~n~~va~~~~----~sp~v 133 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP----LKRIRF---DS----PVWGAQWHPRKRNKCVATIME----ESPVV 133 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCCc----eeEEEc---cC----ccceeeeccccCCeEEEEEec----CCcEE
Confidence 5789999999999998888999999876652 332222 11 345667777544444 44443 12344
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE-EecCCCCCCcccccCccccCe
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS-IISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~-~~~~~~~~~p~~~~~~~~~nG 205 (332)
..|+... ........+.+-...+....+|+.|+..++-+..|.+..++.+..-.+ ...-.. .....-
T Consensus 134 i~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~ 201 (405)
T KOG1273|consen 134 IDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQ 201 (405)
T ss_pred EEecCCc---eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech---------heeeeE
Confidence 4454321 112233322332345555689999998888888899999987743211 111000 123457
Q ss_pred EEEccCceEEEEeCCCCeEEEEeCC
Q 020019 206 IVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 206 i~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
|.++..|..++.++..+.|..++.+
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehh
Confidence 8899999777778877766666554
No 160
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.94 E-value=1.4 Score=40.83 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=92.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....++.+|+.++..+.-.+..-+.++..++... - ++... ..++..+.+..+ |. |++.+++ .++
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~----~--eltgH----KDSVt~~~Fshd-gt-lLATGdm----sG~ 129 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA----G--ELTGH----KDSVTCCSFSHD-GT-LLATGDM----SGK 129 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcce----e--EecCC----CCceEEEEEccC-ce-EEEecCC----Ccc
Confidence 3345778886555555455566566665666531 1 12111 126677888876 77 5555554 367
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|.+|+..+|...+.+.- +. .-.-=+..+|.+.++++-+..|.||.+.... ....+.... ....+
T Consensus 130 v~v~~~stg~~~~~~~~--e~---~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh----------~~~ct 194 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQ--EV---EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH----------NSPCT 194 (399)
T ss_pred EEEEEcccCceEEEeec--cc---CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC----------CCCcc
Confidence 89999988877654421 11 1112255678888888888888888776543 222222111 11223
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.=.|.|||....+-+.++.|..+++.++
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCC
Confidence 3467789944455566889999999988
No 161
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.91 E-value=1.4 Score=40.76 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=49.0
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
=+.|+|.+.+++....+|.||.+...++.. . .+.+.... ....=.+-|+ |+..++.-+ .+.|.+
T Consensus 153 Wl~WHp~a~illAG~~DGsvWmw~ip~~~~-----~--kv~~Gh~~---~ct~G~f~pd-GKr~~tgy~-----dgti~~ 216 (399)
T KOG0296|consen 153 WLKWHPRAHILLAGSTDGSVWMWQIPSQAL-----C--KVMSGHNS---PCTCGEFIPD-GKRILTGYD-----DGTIIV 216 (399)
T ss_pred EEEecccccEEEeecCCCcEEEEECCCcce-----e--eEecCCCC---CcccccccCC-CceEEEEec-----CceEEE
Confidence 367899999888888899999998876441 1 34432221 1222345565 554443322 356899
Q ss_pred EECCCCcEEEEEe
Q 020019 129 YDLSTWNRLFLTQ 141 (332)
Q Consensus 129 ~d~~~g~~~~~~~ 141 (332)
|+++++++.....
T Consensus 217 Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 217 WNPKTGQPLHKIT 229 (399)
T ss_pred EecCCCceeEEec
Confidence 9999999876544
No 162
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.90 E-value=0.023 Score=35.33 Aligned_cols=32 Identities=13% Similarity=-0.174 Sum_probs=28.6
Q ss_pred ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 200 LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 200 ~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
...|+||++++.+ .||++|...+.|++.+.++
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 4568999999998 9999999999999998874
No 163
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.65 Score=41.82 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=85.6
Q ss_pred CCccceEEEeCCCCeEEEEEeCc---CC----Cc------cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc
Q 020019 96 GNGSLGLVLDHPRNRLLVVAADV---FG----NK------YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN 162 (332)
Q Consensus 96 ~~~~~gi~vd~~~g~l~v~~~~~---~~----~~------~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~ 162 (332)
|.+|.-+.+-+| |++.+..++. .+ .+ ...+...|..+|+++....++. .........+++++||+
T Consensus 161 GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l~~lSiRHld~g~dgt 238 (366)
T COG3490 161 GIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SLRQLSIRHLDIGRDGT 238 (366)
T ss_pred CcCcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hhhhcceeeeeeCCCCc
Confidence 357888998886 8877766542 10 00 1235567777788776666631 11235677899999999
Q ss_pred EEEEeCCCC-------eEEEEcCCCceEEEecCCCCCCcccccCc-cccCeEEEccC-ceEEEEeCCCCeEEEEeCCCCC
Q 020019 163 AYVTDVTGS-------KIWKVGVKGEFLSIISSPLFTPKEWYKNL-VGLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDGV 233 (332)
Q Consensus 163 lyvtd~~~~-------~I~~v~~~g~~~~~~~~~~~~~p~~~~~~-~~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~~ 233 (332)
+|+..-..| -|-.+ ..|+...++..+ +.....+ ...-.|+.+.+ |.+-++....|+...+|.+++.
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~-~~g~~l~~~~~p----ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHF-RKGEPLEFLDLP----EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred EEEEEEeeCCCccCCcceeec-cCCCcCcccCCC----HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 999864322 12222 233433322111 1100111 13446777654 4777777778888889999882
Q ss_pred CccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 234 GEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 234 ~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
.+... .+....|++....|
T Consensus 314 ----vv~~a-----~l~daaGva~~~~g 332 (366)
T COG3490 314 ----VVSEA-----ALPDAAGVAAAKGG 332 (366)
T ss_pred ----EEecc-----cccccccceeccCc
Confidence 33322 33344577776654
No 164
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.87 E-value=0.85 Score=46.14 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=111.0
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+.|+..+ +++++.-+.+|--|.+...++ +....+++ -+..++++|.+++.|+. +- -.+++..
T Consensus 374 DlSWSKn~-fLLSSSMDKTVRLWh~~~~~C-------L~~F~Hnd----fVTcVaFnPvDDryFiS-GS----LD~KvRi 436 (712)
T KOG0283|consen 374 DLSWSKNN-FLLSSSMDKTVRLWHPGRKEC-------LKVFSHND----FVTCVAFNPVDDRYFIS-GS----LDGKVRL 436 (712)
T ss_pred ecccccCC-eeEeccccccEEeecCCCcce-------eeEEecCC----eeEEEEecccCCCcEee-cc----cccceEE
Confidence 47788765 555554456666666665554 12333454 46789999987785554 32 2468889
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE---ecCCCCCCcccccCccccCe
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI---ISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~---~~~~~~~~p~~~~~~~~~nG 205 (332)
|+....++....++. -....+++-|||...|.-+.+|....++..|-..+. +...... . . ......|
T Consensus 437 WsI~d~~Vv~W~Dl~------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K-k--~-~~~rITG 506 (712)
T KOG0283|consen 437 WSISDKKVVDWNDLR------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK-K--K-QGKRITG 506 (712)
T ss_pred eecCcCeeEeehhhh------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc-c--c-cCceeee
Confidence 999877776655552 345669999999877766777877777776542221 1111111 0 0 1125789
Q ss_pred EEEccCc--eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 206 IVYHPDG--FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 206 i~~~~dG--~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
+-+.|.. .|.|+. +..+|.-||..+.. .+..++.. ......--..+..||+-+|+..
T Consensus 507 ~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~----lv~KfKG~-~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTS-NDSRIRIYDGRDKD----LVHKFKGF-RNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred eEecCCCCCeEEEec-CCCceEEEeccchh----hhhhhccc-ccCCcceeeeEccCCCEEEEee
Confidence 9988765 588764 56678888885431 23323211 1222334455666777666653
No 165
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=95.83 E-value=1.3 Score=39.53 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=106.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC-------CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST-------WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG 170 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~-------g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~ 170 (332)
.+.++.++.. |++.++..+..--..+.|..||.+. .++...+.. | .+.++-...++-|...|+--..
T Consensus 95 ~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~---~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 95 PVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--P---DSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred eeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--C---ccceeeeeecccCCEEEEecCC
Confidence 4578888886 7766665542101245677888762 222222222 1 2567778889999888887788
Q ss_pred CeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 171 SKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 171 ~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
|.|.++|.. |+... ++... .....|.|.+++|.+.+++-....+---+|..+- +.++.+... .++
T Consensus 169 G~is~~da~~g~~~v--~s~~~-------h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty~te-~Pv 234 (327)
T KOG0643|consen 169 GSISIYDARTGKELV--DSDEE-------HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTYTTE-RPV 234 (327)
T ss_pred CcEEEEEcccCceee--echhh-------hccccccccccCCcceEEecccCccceeeeccce----eeEEEeeec-ccc
Confidence 999999976 44332 11110 1235789999999999998876665555777654 244545443 232
Q ss_pred CCCCeEEEeCCCeEEEEe-CCceEEEEcCCCceEEEEEee---------ec-CCCcccc-eEEEE-ECCeEEEE
Q 020019 250 SFGDGLELLSPTKLVVAG-NPSARLVESSDGWETAAVVAK---------FS-GPVHRLA-TAATV-KDGRVYLN 310 (332)
Q Consensus 250 ~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg~~~~~~~~~---------~~-~~~~~~p-t~va~-~~g~lyv~ 310 (332)
+..++.|-....|.. .+..+-|-.-+. +.++...+ +. ..++-.| .++++ .+|+.|-+
T Consensus 235 ---N~aaisP~~d~VilgGGqeA~dVTTT~~-r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 235 ---NTAAISPLLDHVILGGGQEAMDVTTTST-RAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS 304 (327)
T ss_pred ---cceecccccceEEecCCceeeeeeeecc-cccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence 345666654444443 333332222222 22222111 11 1122233 56888 88888864
No 166
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.82 E-value=0.02 Score=35.60 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=29.3
Q ss_pred CCCccceEECCCC-cEEEEeCCCCeEEEEcCCCc
Q 020019 149 KSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGE 181 (332)
Q Consensus 149 ~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~ 181 (332)
...|+++++|+.+ ++|.+|+....|++.+.+|.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 5789999999985 69999999999999998875
No 167
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.81 E-value=0.64 Score=44.78 Aligned_cols=221 Identities=15% Similarity=0.164 Sum_probs=122.8
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+.|....-..+||+.+++.-...+|..||...-+. .+-......+-..+.+++.+|....|.|..+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTp--------rikaeltssapaCyALa~spDakvcFsccsd------ 530 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP--------RIKAELTSSAPACYALAISPDAKVCFSCCSD------ 530 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCc--------chhhhcCCcchhhhhhhcCCccceeeeeccC------
Confidence 34666788899999887774467788888764331 1111111111245788999985666666653
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+.|.+||+.+..+++ ++.+.. -....|.+.+||. || |-...+.|...|.. |+...- ..|. .
T Consensus 531 GnI~vwDLhnq~~Vr--qfqGht---DGascIdis~dGtklW-TGGlDntvRcWDlregrqlqq---hdF~--------S 593 (705)
T KOG0639|consen 531 GNIAVWDLHNQTLVR--QFQGHT---DGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQ---HDFS--------S 593 (705)
T ss_pred CcEEEEEcccceeee--cccCCC---CCceeEEecCCCceee-cCCCccceeehhhhhhhhhhh---hhhh--------h
Confidence 568999998765543 453322 2344588888885 55 44456777777754 332211 1121 1
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc--eEEEEcCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS--ARLVESSD 278 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~--~~~v~~~d 278 (332)
....+-..|.| +|.|. +.++.++....... .. ..+. ..-+..=.+.|..-|+.||+..-. ...-+.+-
T Consensus 594 QIfSLg~cP~~dWlavG-Mens~vevlh~skp-----~k--yqlh-lheScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVG-MENSNVEVLHTSKP-----EK--YQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred hheecccCCCccceeee-cccCcEEEEecCCc-----cc--eeec-ccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 23456677888 77775 45666776665533 11 1211 111223357778889999996321 11225677
Q ss_pred CceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 279 GWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 279 g~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
|. .+... ++..--.++-+ .++++.|+
T Consensus 665 Ga---siFqs---kE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 665 GA---SIFQS---KESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred cc---ceeec---cccCcceeeeeccCceEEEe
Confidence 73 23322 11222245666 55555554
No 168
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.77 E-value=0.1 Score=49.95 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=108.4
Q ss_pred EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 38 YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
.+++..+.....+++++|.++.|+...+|.|..||..+... . +.+...+ .+...|.+.++.-+||....
T Consensus 503 aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~----V--rqfqGht----DGascIdis~dGtklWTGGl- 571 (705)
T KOG0639|consen 503 AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL----V--RQFQGHT----DGASCIDISKDGTKLWTGGL- 571 (705)
T ss_pred hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee----e--ecccCCC----CCceeEEecCCCceeecCCC-
Confidence 33455555556789999999999998899999999986542 1 1333222 26778888887446887644
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCc--eEEEecCCCCCCcc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGE--FLSIISSPLFTPKE 195 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~--~~~~~~~~~~~~p~ 195 (332)
.+.+..||++.+......++... .|. +-.-|.|.....-..++.++.+...+. ....... .
T Consensus 572 -----DntvRcWDlregrqlqqhdF~SQ----IfS--Lg~cP~~dWlavGMens~vevlh~skp~kyqlhlhe-S----- 634 (705)
T KOG0639|consen 572 -----DNTVRCWDLREGRQLQQHDFSSQ----IFS--LGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHE-S----- 634 (705)
T ss_pred -----ccceeehhhhhhhhhhhhhhhhh----hee--cccCCCccceeeecccCcEEEEecCCccceeecccc-c-----
Confidence 35788999998876555555321 111 112345543333344555555554432 2211111 1
Q ss_pred cccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
-.-.+.|.+-|..||+..-.+-+-.+....|. .+ +..+ +.+..-...+..|.+++|++.+
T Consensus 635 ------cVLSlKFa~cGkwfvStGkDnlLnawrtPyGa----si--Fqsk--E~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 635 ------CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA----SI--FQSK--ESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ------EEEEEEecccCceeeecCchhhhhhccCcccc----ce--eecc--ccCcceeeeeccCceEEEecCC
Confidence 12256788888888877666654333333331 22 2322 2233333445567788888654
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.64 E-value=0.65 Score=46.09 Aligned_cols=162 Identities=14% Similarity=0.174 Sum_probs=96.3
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..-+++|+|++...+ ..+=+||++.++... .. ..+-..|... .....+.+.-+.+.++++..+ ...+
T Consensus 386 s~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v-----k~-~~v~~~~~~~-~~a~~i~ftid~~k~~~~s~~-----~~~l 453 (691)
T KOG2048|consen 386 SCAAISPDGNLIAISTVSRTKIYRLQPDPNV-----KV-INVDDVPLAL-LDASAISFTIDKNKLFLVSKN-----IFSL 453 (691)
T ss_pred eeeccCCCCCEEEEeeccceEEEEeccCcce-----eE-EEeccchhhh-ccceeeEEEecCceEEEEecc-----ccee
Confidence 346789999988655 667789999987532 11 1222122211 122333333333667776642 3457
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeE
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
..++.++...+....+.. .......+-+++.++|+.+.+-+..+.|+.++..++....+.. .+. ......
T Consensus 454 e~~el~~ps~kel~~~~~-~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln--------~~vTa~ 523 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQS-QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLN--------IDVTAA 523 (691)
T ss_pred EEEEecCcchhhhhcccc-ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccC--------cceeee
Confidence 777777655443334321 1234677789999999877666688999999998765443321 110 112344
Q ss_pred EEccCc--eEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDG--FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG--~Lyva~~~~~~i~~id~~~~ 232 (332)
++.|.- +|.|+. .+++++.++.+..
T Consensus 524 ~~~~~~~~~lvvat-s~nQv~efdi~~~ 550 (691)
T KOG2048|consen 524 AFSPFVRNRLVVAT-SNNQVFEFDIEAR 550 (691)
T ss_pred eccccccCcEEEEe-cCCeEEEEecchh
Confidence 555443 777765 5778999998643
No 170
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.61 E-value=0.78 Score=43.14 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=109.5
Q ss_pred ceEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 49 CAKWDDSGRRFIVS-FLD--GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 49 gia~d~~g~~~~~~-~~~--g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-+.++++|+ |+.+ ..+ .-|+.+..+.. .. ... ++.... ..+.-|...||+..|..|.. ...
T Consensus 229 fl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~-~k--l~~--tlvgh~----~~V~yi~wSPDdryLlaCg~------~e~ 292 (519)
T KOG0293|consen 229 FLQFSHNGK-YLASASKDSTAIIWIVVYDVH-FK--LKK--TLVGHS----QPVSYIMWSPDDRYLLACGF------DEV 292 (519)
T ss_pred EEEEcCCCe-eEeeccCCceEEEEEEecCcc-ee--eee--eeeccc----CceEEEEECCCCCeEEecCc------hHh
Confidence 478888887 4444 332 34788877643 10 011 222111 25667889998444444433 234
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCe
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
+..||..+|.....+.- . -...+...+.-|||.=+|+-+....|+..+.||....-+.. -..| ....
T Consensus 293 ~~lwDv~tgd~~~~y~~---~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g--vr~~-------~v~d 359 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPS---G-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG--VRDP-------KVHD 359 (519)
T ss_pred eeeccCCcchhhhhccc---C-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc--cccc-------eeEE
Confidence 78899999886544332 1 13457778999999878998888999999999875432211 1111 2458
Q ss_pred EEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 206 IVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
+++.+|| +++.... ..+|.-++.++.. .+..+... ..-..+.+..||++...+
T Consensus 360 lait~Dgk~vl~v~~-d~~i~l~~~e~~~----dr~lise~----~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 360 LAITYDGKYVLLVTV-DKKIRLYNREARV----DRGLISEE----QPITSFSISKDGKLALVN 413 (519)
T ss_pred EEEcCCCcEEEEEec-ccceeeechhhhh----hhcccccc----CceeEEEEcCCCcEEEEE
Confidence 8999999 8887664 3456556655431 11122221 123457788889988887
No 171
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.54 E-value=2.7 Score=42.43 Aligned_cols=247 Identities=16% Similarity=0.320 Sum_probs=129.0
Q ss_pred Ccee--EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCc-----cceee--------eEEecccCcC---
Q 020019 34 ATHV--YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPG-----TVLEE--------VTLVKDLELT--- 95 (332)
Q Consensus 34 ~~~~--i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~-----~~~~~--------~~~~~~~~~~--- 95 (332)
+|.. +.+.-.........+.+++.++..+..+..|.+++....+... .+.+. .... ++...
T Consensus 366 lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~-D~~~~~~~ 444 (707)
T KOG0263|consen 366 LPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML-DDDSSGTS 444 (707)
T ss_pred CCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc-cccCCcee
Confidence 3444 3334444445667899999877777777777777665322100 00000 0011 11101
Q ss_pred -----C-CccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC
Q 020019 96 -----G-NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT 169 (332)
Q Consensus 96 -----~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~ 169 (332)
+ ..+.|..+.|+ .+..+.... ...+..|.+.+..-...+. ++ ..-.-++.+.|.| .||+...
T Consensus 445 ~~L~GH~GPVyg~sFsPd-~rfLlScSE-----D~svRLWsl~t~s~~V~y~--GH---~~PVwdV~F~P~G-yYFatas 512 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPD-RRFLLSCSE-----DSSVRLWSLDTWSCLVIYK--GH---LAPVWDVQFAPRG-YYFATAS 512 (707)
T ss_pred EEeecCCCceeeeeeccc-ccceeeccC-----CcceeeeecccceeEEEec--CC---CcceeeEEecCCc-eEEEecC
Confidence 1 13589999998 554444332 2345566776544322221 11 1223457788988 6665433
Q ss_pred ---CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecC
Q 020019 170 ---GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAG 246 (332)
Q Consensus 170 ---~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g 246 (332)
..++|..|-. +.++.... ...-.+.+.|+|+.....+.....++.-+|..+|. .++.+. |
T Consensus 513 ~D~tArLWs~d~~-~PlRifag----------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~----~VRiF~--G 575 (707)
T KOG0263|consen 513 HDQTARLWSTDHN-KPLRIFAG----------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN----SVRIFT--G 575 (707)
T ss_pred CCceeeeeecccC-Cchhhhcc----------cccccceEEECCcccccccCCCCceEEEEEcCCCc----EEEEec--C
Confidence 3356655542 33332211 12234679999998444445666677778888772 454443 2
Q ss_pred CCCCCCCeEEEeCCCeEEEEeCCce--EEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEEEecCcc
Q 020019 247 GPLSFGDGLELLSPTKLVVAGNPSA--RLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLNHMLGFG 316 (332)
Q Consensus 247 ~~~~~pdGi~~~~dG~l~va~~~~~--~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g~~ 316 (332)
+......+++.|+|+..++..... .+-+.+.| ++...+.+ .-..-.++.| .+|.+.++...+++
T Consensus 576 -H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 576 -HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG----SLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred -CCCceEEEEEcCCCceEeecccCCcEEEEEcCCC----cchhhhhc-ccCceeEEEEecCCCEEEecCCCCe
Confidence 445667899999998777764332 22245555 22222111 0122356777 66767765544444
No 172
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.53 E-value=0.08 Score=33.26 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=31.3
Q ss_pred ceEEEEeCCCC-eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC
Q 020019 212 GFLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS 259 (332)
Q Consensus 212 G~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~ 259 (332)
++||++|.... +|.+.++++. ..+.+- . ..+..|.||++|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs-----~~~~vi-~-~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS-----NRRTVI-S-DDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST-----SEEEEE-E-SSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCC-----CeEEEE-E-CCCCCcCEEEECC
Confidence 47999999999 9999999854 333332 2 3578999999984
No 173
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.51 E-value=1.3 Score=43.56 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=67.1
Q ss_pred EEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-------------
Q 020019 102 LVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------------- 168 (332)
Q Consensus 102 i~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------------- 168 (332)
+..-++ |++++... ..+..+|.- |++.+...++. ....+-+|+...++|++++..+
T Consensus 153 ~~~l~n-G~ll~~~~-------~~~~e~D~~-G~v~~~~~l~~--~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~ 221 (477)
T PF05935_consen 153 FKQLPN-GNLLIGSG-------NRLYEIDLL-GKVIWEYDLPG--GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDT 221 (477)
T ss_dssp EEE-TT-S-EEEEEB-------TEEEEE-TT---EEEEEE--T--TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE--
T ss_pred eeEcCC-CCEEEecC-------CceEEEcCC-CCEEEeeecCC--cccccccccEECCCCCEEEEEeecccccCCCCccE
Confidence 566664 88887764 468889985 78777777742 1124678999999998654322
Q ss_pred CCCeEEEEcCCCceEEEecCC-CCC---C----c-------c--cccCccccCeEEEcc-CceEEEEeCCCCeEEEEeCC
Q 020019 169 TGSKIWKVGVKGEFLSIISSP-LFT---P----K-------E--WYKNLVGLNGIVYHP-DGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 169 ~~~~I~~v~~~g~~~~~~~~~-~~~---~----p-------~--~~~~~~~~nGi~~~~-dG~Lyva~~~~~~i~~id~~ 230 (332)
....|..+|++|+....++.. .+. . + . ....-...|+|.+++ ++.|+++-...+.|++|+..
T Consensus 222 ~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 222 VEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp -S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-T
T ss_pred ecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECC
Confidence 145799999889876554311 110 0 0 0 012335679999999 55999999999999999977
Q ss_pred CC
Q 020019 231 DG 232 (332)
Q Consensus 231 ~~ 232 (332)
++
T Consensus 302 t~ 303 (477)
T PF05935_consen 302 TG 303 (477)
T ss_dssp TS
T ss_pred CC
Confidence 66
No 174
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.48 E-value=2.5 Score=40.38 Aligned_cols=215 Identities=16% Similarity=0.219 Sum_probs=113.1
Q ss_pred eehhhcccCCCceeEEEecC------Cccc---cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCc
Q 020019 24 YIISQERANPATHVYHYHSS------SFFR---ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLEL 94 (332)
Q Consensus 24 ~~~~~~~~~~~~~~i~~~~~------~~~p---egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~ 94 (332)
|+.+....++..++-.+... -..| ..++.++.|.+++.+...+.||-|...+|.. +. +.. --.
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L----L~---v~~-aHY 123 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL----LN---VLS-AHY 123 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH----HH---HHH-hhc
Confidence 55566666665555443321 1122 5788899998777775679999999888873 11 221 111
Q ss_pred CCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC-------CcEEEEEecCCCCCCCCCccceEECCCC-c-EEE
Q 020019 95 TGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST-------WNRLFLTQLSGPSDGKSCADDVTVDAEG-N-AYV 165 (332)
Q Consensus 95 ~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~-------g~~~~~~~l~~~~~~~~~~ndiavd~dG-~-lyv 165 (332)
.....|.+..| |.++++.. +.+.+.+|.+-. +.+..+..+... .-.-.|+-++..| + -.+
T Consensus 124 --Q~ITcL~fs~d-gs~iiTgs-----kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---tlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 124 --QSITCLKFSDD-GSHIITGS-----KDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---TLSITDLQIGSGGTNARLY 192 (476)
T ss_pred --cceeEEEEeCC-CcEEEecC-----CCccEEEEEEEeecccccCCCccceeeeccC---cceeEEEEecCCCccceEE
Confidence 14567888875 87777754 356788886521 111111112110 1233455555543 1 122
Q ss_pred EeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCC--Ccc-----
Q 020019 166 TDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGV--GEG----- 236 (332)
Q Consensus 166 td~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~--~~~----- 236 (332)
|.+....+-.+|.. |.++.-+ .|+ ..++.+++||-+ .+|+.. ..|+|+.+++..-. .++
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti---~fp--------~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTI---TFP--------SSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred EecCCceEEEEEeccceeeEEE---ecC--------CcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccc
Confidence 33333333333322 2222111 121 246899999999 777764 56789888775321 110
Q ss_pred --c-eeEEEEecCCCC-CCCCeEEEeCCCeEEEEeCC
Q 020019 237 --E-EIKLIRVAGGPL-SFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 237 --~-~~~~v~~~g~~~-~~pdGi~~~~dG~l~va~~~ 269 (332)
. ..+.-.+.|... .....+++.-||+|.+++..
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 0 001001112111 24667889999999999744
No 175
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.43 E-value=0.3 Score=49.55 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=101.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...|++.|.-+++.++.-.+|-+..++-.++. +...-. .+.++.+|..+...+ +++...+ .-.
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------l~~~l~-l~~~~~~iv~hr~s~-l~a~~~d-----df~ 557 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----------LKKSLR-LGSSITGIVYHRVSD-LLAIALD-----DFS 557 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcc----------eeeeec-cCCCcceeeeeehhh-hhhhhcC-----cee
Confidence 45689999988888877667888888876443 221111 123567888887634 4444333 346
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc-CCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG-VKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~-~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|.++|..+.++.+ ++.+. ....||+++.|||+..++.+..+.|..+| +.|...-.+. +. .-+.
T Consensus 558 I~vvD~~t~kvvR--~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~---vd--------~~~~ 621 (910)
T KOG1539|consen 558 IRVVDVVTRKVVR--EFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL---VD--------SPCT 621 (910)
T ss_pred EEEEEchhhhhhH--Hhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe---cC--------Ccce
Confidence 8889988766543 34321 36789999999999999988889998888 4455543221 11 1245
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKID 228 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id 228 (332)
.+.++|+| .|-.++.+.+-||-+.
T Consensus 622 sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEECCCCCEEEEEEecCceEEEEE
Confidence 78899999 8888888877777654
No 176
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.43 E-value=1.4 Score=41.87 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=94.8
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCc---cceeeeEEecccCcCCCccceEEEeC--CCCeEEEEEeCcCCCc
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPG---TVLEEVTLVKDLELTGNGSLGLVLDH--PRNRLLVVAADVFGNK 122 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gi~vd~--~~g~l~v~~~~~~~~~ 122 (332)
..+.+..||..++++..+|.|..|+..+-..+. .+.....|..+ . -+...|.++. -+.+||-+..|
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-t---lsITDl~ig~Gg~~~rl~TaS~D----- 197 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-T---LSITDLQIGSGGTNARLYTASED----- 197 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-c---ceeEEEEecCCCccceEEEecCC-----
Confidence 356778888888877778887777643211000 00000011100 0 0233444433 23678877764
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCce---E----EEecCCCCCCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEF---L----SIISSPLFTPK 194 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~---~----~~~~~~~~~~p 194 (332)
..+..||+..|.+...+.++ ..++.+++||.++ +|+. +..|.||.++..+.. . +......-..+
T Consensus 198 -~t~k~wdlS~g~LLlti~fp------~si~av~lDpae~~~yiG-t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 198 -RTIKLWDLSLGVLLLTITFP------SSIKAVALDPAERVVYIG-TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred -ceEEEEEeccceeeEEEecC------CcceeEEEcccccEEEec-CCcceEEeeehhcCCcccccccccccccccceee
Confidence 34677899999887777663 3567899999876 5665 456888876644221 0 00000000000
Q ss_pred cccc--CccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 195 EWYK--NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 195 ~~~~--~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.... +......++++-||+|.++-...|++..+|....
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 0001 1124578999999988888778888888887653
No 177
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.42 E-value=1.3 Score=37.86 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=71.8
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEE-eCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVT-DVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvt-d~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.|+.++.+... ...+.+. ...-.++++..|+|+ +.+. ......|..++.+++...-+.. ..
T Consensus 40 ~l~~~~~~~~~-~~~i~l~----~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~------------~~ 102 (194)
T PF08662_consen 40 ELFYLNEKNIP-VESIELK----KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT------------QP 102 (194)
T ss_pred EEEEEecCCCc-cceeecc----CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC------------CC
Confidence 46666665433 3334442 122378899999986 4443 2334467777777664432211 23
Q ss_pred cCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 203 LNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 203 ~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.|.|.|+|+| .|.++... .|.|..+|.+.. +.+.... ......++.+|||+.+++..
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~-----~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFE-----HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccc-----cCcEEEEEEcCCCCEEEEEE
Confidence 5789999999 77766543 467888888754 1232222 12356889999999888853
No 178
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.42 E-value=1.8 Score=41.87 Aligned_cols=152 Identities=11% Similarity=0.018 Sum_probs=97.6
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
+...-|++..++.+.|++...++.+..++ + .+. +....+.+ ......++|. |.+-+... .
T Consensus 368 ~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~-----~wt~~~~d------~~~~~~fhps-g~va~Gt~------~ 427 (626)
T KOG2106|consen 368 GDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKL-----EWTKIIED------PAECADFHPS-GVVAVGTA------T 427 (626)
T ss_pred ccceeeEEcCCChhheeeccCcceEEEcc-C-Cce-----eEEEEecC------ceeEeeccCc-ceEEEeec------c
Confidence 33556899999999898887778777776 2 221 21112212 3456778886 75444433 4
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCe--EEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSK--IWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~--I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+...++|.++...+.. .. + +.-.+-+++.|+|..+..-+.++. ||+++.+|.....++.... .
T Consensus 428 G~w~V~d~e~~~lv~~-~~----d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s-------- 492 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTI-HT----D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-S-------- 492 (626)
T ss_pred ceEEEEecccceeEEE-Ee----c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-c--------
Confidence 5678889887554432 21 1 345667999999987777777776 5567777765443332221 2
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
...-+.|+.|+...++++..-.|+-+.+.
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEEccc
Confidence 24678899999888898888888666433
No 179
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=3.2 Score=41.38 Aligned_cols=194 Identities=16% Similarity=0.138 Sum_probs=113.8
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...|+++|.+.++ +|+.-.+|.|..+|+.+.+- ....++ .+...+.|++.+.+..+-|.+. .+
T Consensus 70 rsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~--------~~~~d~--~gg~IWsiai~p~~~~l~Igcd------dG 132 (691)
T KOG2048|consen 70 RSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQ--------KYNIDS--NGGAIWSIAINPENTILAIGCD------DG 132 (691)
T ss_pred CceeeEEEccCCe-EEeecCCceEEEEecccCce--------eEEecC--CCcceeEEEeCCccceEEeecC------Cc
Confidence 3779999996665 55665579999999987762 121122 2346789999998555555543 23
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.++.|+..+++......|. . ..++.-.+..+++|.=.++-+..|.|...|.. +...-......+.... ......
T Consensus 133 vl~~~s~~p~~I~~~r~l~--r-q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k--~~~~iV 207 (691)
T KOG2048|consen 133 VLYDFSIGPDKITYKRSLM--R-QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK--REPTIV 207 (691)
T ss_pred eEEEEecCCceEEEEeecc--c-ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc--CCceEE
Confidence 5666777666665555552 2 24778889999998756777777888888765 3332211111110000 000112
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~ 268 (332)
=++.+-.|++|.-.|+ +|.|..+|.+.+++ ++.+... ....-.|+++++ .+++.++.
T Consensus 208 WSv~~Lrd~tI~sgDS-~G~V~FWd~~~gTL----iqS~~~h---~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 208 WSVLFLRDSTIASGDS-AGTVTFWDSIFGTL----IQSHSCH---DADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred EEEEEeecCcEEEecC-CceEEEEcccCcch----hhhhhhh---hcceeEEEEcCCCCeEEEccC
Confidence 2444457777766665 67888888887742 3322211 123345667665 55666653
No 180
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.37 E-value=2.7 Score=40.25 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=109.4
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.++.+-.||+++...-.+|-|..+|..+.. .+. .+... . ....-+.+.+.++++++...| ...+.
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~----iLR--~~~ah-~---apv~~~~f~~~d~t~l~s~sD-----d~v~k 136 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRV----ILR--QLYAH-Q---APVHVTKFSPQDNTMLVSGSD-----DKVVK 136 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHH----HHH--HHhhc-c---CceeEEEecccCCeEEEecCC-----CceEE
Confidence 457777888888766667888888843311 111 22211 1 123456677765777776544 23456
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcCCCceEE--EecCCCCCCcccccCccccC
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGVKGEFLS--IISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~~g~~~~--~~~~~~~~~p~~~~~~~~~n 204 (332)
.||..++.+ ..++.+.. -+....++.|. +.+.+|-+..|.|--+|..-.... -++.. .| ..
T Consensus 137 ~~d~s~a~v--~~~l~~ht---DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg---~p--------Ve 200 (487)
T KOG0310|consen 137 YWDLSTAYV--QAELSGHT---DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG---CP--------VE 200 (487)
T ss_pred EEEcCCcEE--EEEecCCc---ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC---Cc--------ee
Confidence 688877664 34554332 23344555554 459999999999888886533222 12221 11 24
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE-eCCceEEEEcCCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA-GNPSARLVESSDG 279 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va-~~~~~~~v~~~dg 279 (332)
.+++-|.|.++++.. ++.+-.+|+.+|. +.+ .... ........|++..++.-.++ .-.+...++.-+.
T Consensus 201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~---qll--~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 201 SVLALPSGSLIASAG-GNSVKVWDLTTGG---QLL--TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred eEEEcCCCCEEEEcC-CCeEEEEEecCCc---eeh--hhhh-cccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 567778887887654 4557778888652 111 1111 13355678888887664444 4333333454444
No 181
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.36 E-value=2.8 Score=40.34 Aligned_cols=136 Identities=18% Similarity=0.108 Sum_probs=66.9
Q ss_pred ceEEEEECCCCcEEEE-EecCC---CCC-----CCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCc
Q 020019 124 SAVAAYDLSTWNRLFL-TQLSG---PSD-----GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~-~~l~~---~~~-----~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
+.|+.||+++..++.. +.++- +.+ ...+.++.++-+ |+.|..-+ .|+.+..++-+....-+....
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~---- 360 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVS-RGKAFIMRPWDGYSIQVGKKG---- 360 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCC-CcEEEEEe-cCcEEEECCCCCeeEEcCCCC----
Confidence 4578888877654432 22210 000 113566666653 55544433 245555554433222111110
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEeC-CceE
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAGN-PSAR 272 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~~-~~~~ 272 (332)
.....-+..+++ .+.++......|-.++.+++ .++.+. .+++....|.++++|+ +.++++ ...|
T Consensus 361 -----~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~-----e~kr~e---~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 361 -----GVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG-----EVKRIE---KDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred -----ceEEEEEccCCc-ceEEeccCCceEEEEecCCc-----eEEEee---CCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 011112222233 34555555556777777766 455554 2456667788888888 444443 2456
Q ss_pred EEEcCCC
Q 020019 273 LVESSDG 279 (332)
Q Consensus 273 ~v~~~dg 279 (332)
++....|
T Consensus 427 vididng 433 (668)
T COG4946 427 VIDIDNG 433 (668)
T ss_pred EEEecCC
Confidence 6666666
No 182
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.26 E-value=2.8 Score=39.77 Aligned_cols=187 Identities=11% Similarity=0.135 Sum_probs=103.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.++...+.|..+++...++...--|..++.. .+..++. ..+-.....+++|| |.++.+.. ..+.|.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-------lt~vs~~-~s~v~~ts~~fHpD-gLifgtgt-----~d~~vk 372 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-------LTVVSDE-TSDVEYTSAAFHPD-GLIFGTGT-----PDGVVK 372 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcE-------EEEEeec-cccceeEEeeEcCC-ceEEeccC-----CCceEE
Confidence 3455666666444444445444444443431 1222221 11113457789997 98887754 256788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
.||++++... ..+++. .+-...+.+..+|-..++....+.|..+|.. |... -..+.- +.....+.+.
T Consensus 373 iwdlks~~~~--a~Fpgh---t~~vk~i~FsENGY~Lat~add~~V~lwDLR-Kl~n---~kt~~l----~~~~~v~s~~ 439 (506)
T KOG0289|consen 373 IWDLKSQTNV--AKFPGH---TGPVKAISFSENGYWLATAADDGSVKLWDLR-KLKN---FKTIQL----DEKKEVNSLS 439 (506)
T ss_pred EEEcCCcccc--ccCCCC---CCceeEEEeccCceEEEEEecCCeEEEEEeh-hhcc---cceeec----cccccceeEE
Confidence 8999987643 345321 2345569999999666777777778777754 2111 011211 1233578999
Q ss_pred EccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 208 YHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 208 ~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
||..| +|.++ ..+=+||.+...+..= ..++. +. ...+-.+|+.+...-.+.+..
T Consensus 440 fD~SGt~L~~~-g~~l~Vy~~~k~~k~W--~~~~~--~~-~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 440 FDQSGTYLGIA-GSDLQVYICKKKTKSW--TEIKE--LA-DHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred EcCCCCeEEee-cceeEEEEEecccccc--eeeeh--hh-hcccccceeeecccceEEeec
Confidence 99999 66655 4445677776554310 01111 11 122356788887665444443
No 183
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.18 E-value=2.7 Score=39.08 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=94.2
Q ss_pred ccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 45 FFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.....+.+.+||..+++. ..+..|..+|++++.. . .+.. -+. .+..=+...|+.+.++.+..+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-----~--pL~~-~gl--gg~slLkwSPdgd~lfaAt~d------ 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-----I--PLIP-KGL--GGFSLLKWSPDGDVLFAATCD------ 259 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-----c--cccc-cCC--CceeeEEEcCCCCEEEEeccc------
Confidence 366789999999988877 6678899999998763 1 2221 111 133456789984455555443
Q ss_pred ceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCC---------CC
Q 020019 124 SAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPL---------FT 192 (332)
Q Consensus 124 ~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~---------~~ 192 (332)
+...+|... +..-+ ...+ . ..+.+.-..+|+|+ |.++.++...||.+.-+++-..+..... +.
T Consensus 260 avfrlw~e~q~wt~e-rw~l---g--sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKE-RWIL---G--SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred ceeeeehhcccceec-ceec---c--CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 222334322 11111 1222 1 23778889999996 8899999999999887765433221000 00
Q ss_pred -----CcccccCccccCeEEEccCc-eEEEEeCCCCe
Q 020019 193 -----PKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGN 223 (332)
Q Consensus 193 -----~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~ 223 (332)
.+ ..--...+.-|++||.| +|-|.--+...
T Consensus 334 e~ti~ag-~~l~cgeaq~lawDpsGeyLav~fKg~~~ 369 (445)
T KOG2139|consen 334 EVTICAG-QRLCCGEAQCLAWDPSGEYLAVIFKGQSF 369 (445)
T ss_pred hhhhhcC-cccccCccceeeECCCCCEEEEEEcCCch
Confidence 00 00012357899999999 88888766653
No 184
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.09 E-value=1.4 Score=45.34 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=93.4
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..++++.+|++......+=.|-.++.++.. ++..+... + ....++.++|. +.+.++..- .+.|.
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~~~~lrgh-~---apVl~l~~~p~-~~fLAvss~-----dG~v~ 163 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------QEKVLRGH-D---APVLQLSYDPK-GNFLAVSSC-----DGKVQ 163 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEeccccc------hheeeccc-C---CceeeeeEcCC-CCEEEEEec-----CceEE
Confidence 457888888866655443344444444332 11122211 1 14679999997 665555432 46799
Q ss_pred EEECCCCcEEEEEecCCCCC--C-CCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE-ecCCCCCCcccccCcccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSD--G-KSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI-ISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~--~-~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~-~~~~~~~~p~~~~~~~~~ 203 (332)
+||+.++........-.+.. . ....+-+++.|+|.-|..-...+.|-.++.+|-...+ +.. .. .-...
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~-------~ss~~ 235 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KL-------SSSKF 235 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-cc-------cccce
Confidence 99999887654433211111 1 2345668999995444433456788888887643332 111 11 01225
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
+-+.|+|.|.-..+-+..|.|..+|.++
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 7899999995555556788898888884
No 185
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.07 E-value=0.18 Score=37.09 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=33.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVG 177 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~ 177 (332)
-+.+.-||++. ... . ..+..+||||+++++++ |||++.....|+.+.
T Consensus 35 ~~~Vvyyd~~~--~~~---v---a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 35 WGNVVYYDGKE--VKV---V---ASGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CceEEEEeCCE--eEE---e---eccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 45566788642 211 1 23458999999999975 999999999888764
No 186
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.05 E-value=3.5 Score=39.72 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=74.7
Q ss_pred ceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 154 DVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 154 diavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
.+..|+++ +.+.+.....+-.++.+|.. .+.- . .+...-.+.+++|| .+.+++ ....||.||.++
T Consensus 366 r~~~~~e~-~vigt~dgD~l~iyd~~~~e~kr~e-~----------~lg~I~av~vs~dGK~~vvaN-dr~el~vididn 432 (668)
T COG4946 366 RIQVDPEG-DVIGTNDGDKLGIYDKDGGEVKRIE-K----------DLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN 432 (668)
T ss_pred EEccCCcc-eEEeccCCceEEEEecCCceEEEee-C----------CccceEEEEEcCCCcEEEEEc-CceEEEEEEecC
Confidence 34445553 55555555577777777543 3332 1 22345578899999 566665 567899999998
Q ss_pred CCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC------CceEEEEcCCCceEEEEEeeecCCCcccceEEEE--E
Q 020019 232 GVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN------PSARLVESSDGWETAAVVAKFSGPVHRLATAATV--K 303 (332)
Q Consensus 232 ~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~------~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~--~ 303 (332)
+ .++.+.-+ ...--.+++..++++.+.=.- +++.+.....+ +.-.+... ...++ +-+| +
T Consensus 433 g-----nv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vTT~---ta~Df--sPaFD~d 499 (668)
T COG4946 433 G-----NVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVTTP---TAYDF--SPAFDPD 499 (668)
T ss_pred C-----CeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEecCC---ccccc--CcccCCC
Confidence 8 34545433 112234566667665443332 22333333333 22222211 11222 2355 5
Q ss_pred CCeEEEEEecCccccCCc
Q 020019 304 DGRVYLNHMLGFGYPKKK 321 (332)
Q Consensus 304 ~g~lyv~~~~g~~~~~~~ 321 (332)
++.||.-+....+.+.++
T Consensus 500 ~ryLYfLs~RsLdPs~Dr 517 (668)
T COG4946 500 GRYLYFLSARSLDPSNDR 517 (668)
T ss_pred CcEEEEEeccccCCCCCe
Confidence 677887665566655554
No 187
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.04 E-value=1.1 Score=41.75 Aligned_cols=154 Identities=11% Similarity=0.084 Sum_probs=94.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
-++.|+|+|..+++...+.++..+|+.+.+. .. +.-.. -+.+..++..|| |.. ++.+- ..+.|.
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp----~~--t~KgH----~~WVlcvawsPD-gk~-iASG~----~dg~I~ 182 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETP----LF--TCKGH----KNWVLCVAWSPD-GKK-IASGS----KDGSIR 182 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCCc----ce--eecCC----ccEEEEEEECCC-cch-hhccc----cCCeEE
Confidence 4578999999888777778888888876541 11 11110 035789999997 884 44332 356788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceE-----ECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVT-----VDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndia-----vd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.||+++|+..-. .|.+.. .--++++ .+|..+.+.+.+..|.|...|..++...+.-.. ....
T Consensus 183 lwdpktg~~~g~-~l~gH~---K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg---------HT~~ 249 (480)
T KOG0271|consen 183 LWDPKTGQQIGR-ALRGHK---KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG---------HTAS 249 (480)
T ss_pred EecCCCCCcccc-cccCcc---cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc---------Cccc
Confidence 999999876532 332211 1223333 356667888888889888888875433332111 0122
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
...|.+..+|.||-+ +..++|-.++...
T Consensus 250 VTCvrwGG~gliySg-S~DrtIkvw~a~d 277 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSG-SQDRTIKVWRALD 277 (480)
T ss_pred eEEEEEcCCceEEec-CCCceEEEEEccc
Confidence 468888877777755 4455554444443
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.00 E-value=1.2 Score=40.77 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=105.7
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCcCCCccceEEEeCCCCe-EEEEEeCcCCCccceEEEEE
Q 020019 53 DDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LELTGNGSLGLVLDHPRNR-LLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 53 d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~vd~~~g~-l~v~~~~~~~~~~~~l~~~d 130 (332)
.|+.++|.++..+.-|+.+|.-+++.+.. ...... .+. .+...+.+.+| |. ||...+ ..|.+||
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraS----y~~ydh~de~--taAhsL~Fs~D-GeqlfaGyk-------rcirvFd 185 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRAS----YRAYDHQDEY--TAAHSLQFSPD-GEQLFAGYK-------RCIRVFD 185 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccc----hhhhhhHHhh--hhheeEEecCC-CCeEeeccc-------ceEEEee
Confidence 56667776666677899999888774210 011111 111 25778999997 65 444433 4788999
Q ss_pred C-CCCcEEEEEe-c-CCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccCe
Q 020019 131 L-STWNRLFLTQ-L-SGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNG 205 (332)
Q Consensus 131 ~-~~g~~~~~~~-l-~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nG 205 (332)
. ++|..-.... + .+.....+.-..+++.|-. ..+..-+....+-.+.-++ +...++.. ...+..-
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------h~gGvTh 255 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------HGGGVTH 255 (406)
T ss_pred ccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------cCCCeee
Confidence 8 6775322211 1 1000112345557777754 3565555555544444443 34433321 2346778
Q ss_pred EEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC-CCCCeEEE--eCCCeEEEEeC
Q 020019 206 IVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL-SFGDGLEL--LSPTKLVVAGN 268 (332)
Q Consensus 206 i~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~-~~pdGi~~--~~dG~l~va~~ 268 (332)
+.|.+|| .||+...-..+|..+|+..-+ ..+ +.+.+ .. ..-.-|-+ +++|++.+++.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~---~pv--~~L~r-hv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSR---DPV--YALER-HVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhcc---chh--hhhhh-hccCccceEEEecCCCCceeeccC
Confidence 8999999 999988888899999887431 111 22221 11 12234555 47788888874
No 189
>PRK13684 Ycf48-like protein; Provisional
Probab=94.97 E-value=3.1 Score=38.77 Aligned_cols=188 Identities=11% Similarity=0.043 Sum_probs=91.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecc-cCc--CCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKD-LEL--TGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
...++++..+.+.|++.. .|.|++=. ++++ +|... ... .......+.+++ +..|++..
T Consensus 47 ~l~~v~F~d~~~g~avG~-~G~il~T~-DgG~---------tW~~~~~~~~~~~~~l~~v~~~~--~~~~~~G~------ 107 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGS-NRTLLETN-DGGE---------TWEERSLDLPEENFRLISISFKG--DEGWIVGQ------ 107 (334)
T ss_pred ceEEEEEeCCCcEEEEEC-CCEEEEEc-CCCC---------CceECccCCcccccceeeeEEcC--CcEEEeCC------
Confidence 556788877667676553 47777764 3343 12211 111 112345677764 34576632
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
.+.|++ -.+.|+-....... ......+..+....++.+|+.. ..+.|++-+..|+.=.....+ ....
T Consensus 108 ~g~i~~-S~DgG~tW~~~~~~--~~~~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~---------~~g~ 174 (334)
T PRK13684 108 PSLLLH-TTDGGKNWTRIPLS--EKLPGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVED---------AAGV 174 (334)
T ss_pred CceEEE-ECCCCCCCeEccCC--cCCCCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCC---------Ccce
Confidence 223333 22223322222211 0001122333333334556553 457787776666632211111 1124
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceE
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSAR 272 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~ 272 (332)
.+++.+.++|.+++. ...+.+++-..+.++ .-+.+..+ ......++++.++|++|++......
T Consensus 175 ~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~----tW~~~~~~--~~~~l~~i~~~~~g~~~~vg~~G~~ 237 (334)
T PRK13684 175 VRNLRRSPDGKYVAV-SSRGNFYSTWEPGQT----AWTPHQRN--SSRRLQSMGFQPDGNLWMLARGGQI 237 (334)
T ss_pred EEEEEECCCCeEEEE-eCCceEEEEcCCCCC----eEEEeeCC--CcccceeeeEcCCCCEEEEecCCEE
Confidence 578888888844433 345677764223221 12223222 2245678888889999998876544
No 190
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.91 E-value=0.94 Score=45.47 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=107.4
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
++|+++|..+|+.. +.+|-.+|..++.. .+.. .++- ..-.-.+++++++..||.+.. ...+.+
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~t~~~--------~l~s~~~ed-~d~ita~~l~~d~~~L~~a~r------s~llrv 88 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVATGSI--------ALPSGSNED-EDEITALALTPDEEVLVTASR------SQLLRV 88 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEccCCce--------ecccCCccc-hhhhheeeecCCccEEEEeec------cceEEE
Confidence 78999999888765 46788888776652 1111 1110 013457888998667777654 345778
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE--ecCCCCCCcccccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI--ISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~--~~~~~~~~p~~~~~~~~~nGi 206 (332)
|.+++|++...+... . ..-.--+++||.|.+..+-...+.|-+.|-++..-.. .+.+. -.--+
T Consensus 89 ~~L~tgk~irswKa~--H--e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-----------vVssl 153 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAI--H--EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-----------VVSSL 153 (775)
T ss_pred EEcccchHhHhHhhc--c--CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCc-----------eEEEE
Confidence 999999766544321 0 1122348999998777776667887777776553322 11111 13467
Q ss_pred EEccCc--eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 207 VYHPDG--FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 207 ~~~~dG--~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
.|+|+- .|.++....+++..+++.+.... + .... .+.+...++++.+|+.-.++
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc---l--~~~~-~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTC---L--HTMI-LHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchH---H--HHHH-hhhhheeeeeeccCCceEEE
Confidence 788875 45566677888888888854210 1 0111 13344556666666543333
No 191
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=94.75 E-value=2.9 Score=37.22 Aligned_cols=115 Identities=13% Similarity=0.252 Sum_probs=62.0
Q ss_pred EeCCCC--eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccC---c--eEEEEeCCCCeEEEEeCC---CCCCc
Q 020019 166 TDVTGS--KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD---G--FLIVIHTFSGNLFKIDIV---DGVGE 235 (332)
Q Consensus 166 td~~~~--~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d---G--~Lyva~~~~~~i~~id~~---~~~~~ 235 (332)
+|..+. .+|++|++-+.+.-+.++.- |- ......+.|+|+..+ | +++|+... +.|..+.+. .++..
T Consensus 119 SdR~~~~i~~y~Idp~~~~L~sitD~n~--p~-ss~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~ 194 (364)
T COG4247 119 SDRQNDKIVFYKIDPNPQYLESITDSNA--PY-SSSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVG 194 (364)
T ss_pred ccccCCeEEEEEeCCCccceeeccCCCC--cc-ccCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEc
Confidence 344444 35678877443332222110 10 113445788888654 4 56665544 667665554 23333
Q ss_pred cceeEEEEecCCCCCCCCeEEEeCC-CeEEEEe-CCceEEEEc--CCCceEEEEEeee
Q 020019 236 GEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAG-NPSARLVES--SDGWETAAVVAKF 289 (332)
Q Consensus 236 ~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~-~~~~~~v~~--~dg~~~~~~~~~~ 289 (332)
++.++.+.++ ....||..|.+ |.||++. +..+|.... ..| ..++++.++
T Consensus 195 ~k~vR~fk~~----tQTEG~VaDdEtG~LYIaeEdvaiWK~~Aep~~G-~~g~~idr~ 247 (364)
T COG4247 195 TKLVRQFKIP----TQTEGMVADDETGFLYIAEEDVAIWKYEAEPNRG-NTGRLIDRI 247 (364)
T ss_pred ceeeEeeecC----CcccceeeccccceEEEeeccceeeecccCCCCC-Cccchhhhh
Confidence 3455656655 24579988866 9999997 455665432 223 444555443
No 192
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.56 E-value=4.8 Score=38.94 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=84.7
Q ss_pred cccceEEcCCCCEE-EEEe--cC-CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDSGRRF-IVSF--LD-GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~g~~~-~~~~--~~-g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
......|.+++..+ |... .. .+|++++..+++. + ...+.++ .-....+.|+..+|.++....
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----~--~i~~~~g----~~~~P~fspDG~~l~f~~~rd--- 259 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----P--VILNFNG----NNGAPAFSPDGSKLAFSSSRD--- 259 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----c--eeeccCC----ccCCccCCCCCCEEEEEECCC---
Confidence 44557788887643 4442 22 4699999887763 1 2332222 122345667633444443321
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEE-EeCC-CCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYV-TDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyv-td~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
....|+.+|+.+++........ ..-..-.+.|||+ |++ +|.. ...||+++.+|+..+.+....
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~-------- 325 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGF------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG-------- 325 (425)
T ss_pred CCccEEEEcCCCCcceecccCC------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC--------
Confidence 2456999999877643322211 1111566789995 544 5543 458999999987544332211
Q ss_pred CccccCeEEEccCc-eEEEEeCCCCe--EEEEeCCCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTFSGN--LFKIDIVDG 232 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~~~~--i~~id~~~~ 232 (332)
.+..--.++||| .+-+.....+. |...++..+
T Consensus 326 --~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 326 --GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred --CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 111133588999 55555443444 455555544
No 193
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.45 E-value=4.2 Score=37.80 Aligned_cols=183 Identities=14% Similarity=0.086 Sum_probs=105.6
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
+..+++++|-..+|.++..++.|-.+|..+++. . .++.... ..+.|+++.+. .- |+-..+ ....
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----k-ltltGhi----~~vr~vavS~r-Hp-YlFs~g----edk~ 216 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----K-LTLTGHI----ETVRGVAVSKR-HP-YLFSAG----EDKQ 216 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----E-Eeecchh----heeeeeeeccc-Cc-eEEEec----CCCe
Confidence 778899999755444457788999999988873 1 1221111 14689999874 33 433332 1346
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecC-CCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISS-PLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~-~~~~~p~~~~~~~~~n 204 (332)
+..||++..++++.+- .-.+....+++.|--++.+|......+...|...+.....-. ... ..+
T Consensus 217 VKCwDLe~nkvIR~Yh-----GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~----------~V~ 281 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYH-----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN----------PVA 281 (460)
T ss_pred eEEEechhhhhHHHhc-----cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC----------cce
Confidence 7889998877654321 113455668888876788888776666666665554332111 011 122
Q ss_pred eEEEcc-CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHP-DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~-dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
-+.+.+ |+.+|-+. ...+|.-+|+..++. ...+. ........+++.|+-.+|.+.
T Consensus 282 ~V~~~~~dpqvit~S-~D~tvrlWDl~agkt----~~tlt---~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGS-HDSTVRLWDLRAGKT----MITLT---HHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred eEEeecCCCceEEec-CCceEEEeeeccCce----eEeee---cccceeeEEecCCchhhhhcc
Confidence 333333 44777654 455677778876632 21111 112344566667766666664
No 194
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=94.42 E-value=0.45 Score=44.55 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=109.7
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+.|.|+|+.+++...+|+.--+....-. .| +....=+ ..+.+|....+ ++ |...++ ..+.|.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-----FE--tilQaHD---s~Vr~m~ws~~-g~-wmiSgD----~gG~iK 163 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-----FE--TILQAHD---SPVRTMKWSHN-GT-WMISGD----KGGMIK 163 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceee-----HH--HHhhhhc---ccceeEEEccC-CC-EEEEcC----CCceEE
Confidence 457899999999888778887777532211 12 1221111 14678999885 66 666554 245677
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
.|+++-.-+.. ++- -......|+++.|+...|+|.+..|.|...|.. .+..+.+.... --+..+
T Consensus 164 yWqpnmnnVk~-~~a----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg----------wdVksv 228 (464)
T KOG0284|consen 164 YWQPNMNNVKI-IQA----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG----------WDVKSV 228 (464)
T ss_pred ecccchhhhHH-hhH----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC----------CCccee
Confidence 88886433321 111 012456789999988899999998888776643 33333332111 124588
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.|+|...|.++-...+.|--+|+.++. -+..+. ......-++.+.+++++..+.
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~----cl~tlh---~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGS----CLATLH---GHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcc----hhhhhh---hccceEEEEEEcCCCCeeEEc
Confidence 999988677766767766667888762 221111 122345567777777666664
No 195
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.39 E-value=0.27 Score=30.28 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEEC
Q 020019 107 PRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD 158 (332)
Q Consensus 107 ~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd 158 (332)
+.++||+++.. .+.|.++|.++++....+.+ ...|.+++++
T Consensus 2 d~~~lyv~~~~-----~~~v~~id~~~~~~~~~i~v------g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSG-----SNTVSVIDTATNKVIATIPV------GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCC-----CCEEEEEECCCCeEEEEEEC------CCCCceEEeC
Confidence 34789999864 45788999988887766655 2466777764
No 196
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.38 E-value=5 Score=38.49 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=93.5
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+++|..+|+++.+...+|.+..++.++... . ++.. ++ ....|....+ |+ |+..++. .+
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~-----~--tl~~-----HkgPI~slKWnk~-G~-yilS~~v----D~ 298 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI-----S--TLGQ-----HKGPIFSLKWNKK-GT-YILSGGV----DG 298 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhh-----h--hhhc-----cCCceEEEEEcCC-CC-EEEeccC----Cc
Confidence 456799999999998888889988888764321 1 2221 22 3478888885 77 6555542 34
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCc-cceEECCCCcEEEEeCCCCeEE--EEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCA-DDVTVDAEGNAYVTDVTGSKIW--KVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~-ndiavd~dG~lyvtd~~~~~I~--~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+..||..+|+..+.+.+.. .| -|+..-.+ .-|++....+.|+ +++.++-...+..+ ..
T Consensus 299 ttilwd~~~g~~~q~f~~~s------~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH-----------~g 360 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFEFHS------APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGH-----------HG 360 (524)
T ss_pred cEEEEeccCceEEEeeeecc------CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecc-----------cC
Confidence 57789999998887777631 22 23333222 3566666666554 45555434444332 22
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
-.++|.|+|.|.|..+.+..+++--+
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEee
Confidence 36899999999888888887766333
No 197
>PHA02713 hypothetical protein; Provisional
Probab=94.37 E-value=6.3 Score=39.56 Aligned_cols=180 Identities=11% Similarity=0.129 Sum_probs=88.8
Q ss_pred CCCEEEEE-ec-----CCeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 55 SGRRFIVS-FL-----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 55 ~g~~~~~~-~~-----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
++.+|+.+ .. ...++++|+.+.++ ..-+.+. ...-.++++-. |+||+..+.........+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W----------~~~~~m~~~R~~~~~~~~~--g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH----------VELPPMIKNRCRFSLAVID--DTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE----------eeCCCCcchhhceeEEEEC--CEEEEECCcCCCCCCceEE
Confidence 45566654 21 13477888765543 2222222 12223455443 8999986532111234588
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------------------CCeEEEEcCCCceEE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------------------GSKIWKVGVKGEFLS 184 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------------------~~~I~~v~~~g~~~~ 184 (332)
.||+++++......++. .......+++ +|.||+.-.. ...+.++||....
T Consensus 371 ~Ydp~~~~W~~~~~mp~---~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-- 443 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPI---ALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-- 443 (557)
T ss_pred EEECCCCeEEECCCCCc---ccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--
Confidence 99998866543333321 1122222333 5789985321 2458888886431
Q ss_pred EecCCCCCCcccccCccccCeEEEccCceEEEEeCCC------CeEEEEeCCC-CCCccceeEEE-EecCCCCCCCCeEE
Q 020019 185 IISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS------GNLFKIDIVD-GVGEGEEIKLI-RVAGGPLSFGDGLE 256 (332)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~------~~i~~id~~~-~~~~~~~~~~v-~~~g~~~~~pdGi~ 256 (332)
|-..+.+..+ ... .+++.- +|.|||.-..+ ..+.++|+.+ .+ =+.+ ..+ .+. .--|++
T Consensus 444 W~~v~~m~~~-----r~~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-----W~~~~~m~-~~r-~~~~~~ 509 (557)
T PHA02713 444 WETLPNFWTG-----TIR-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-----WELITTTE-SRL-SALHTI 509 (557)
T ss_pred EeecCCCCcc-----ccc-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCC-----eeEccccC-ccc-ccceeE
Confidence 2111222111 112 244443 57899874321 3467888886 42 1111 111 111 123555
Q ss_pred EeCCCeEEEEeC
Q 020019 257 LLSPTKLVVAGN 268 (332)
Q Consensus 257 ~~~dG~l~va~~ 268 (332)
+- +|+||+.+.
T Consensus 510 ~~-~~~iyv~Gg 520 (557)
T PHA02713 510 LH-DNTIMMLHC 520 (557)
T ss_pred EE-CCEEEEEee
Confidence 54 689999974
No 198
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=94.25 E-value=3.1 Score=35.51 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=59.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEE-eC--CCCeEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVT-DV--TGSKIW 174 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvt-d~--~~~~I~ 174 (332)
....++..|+..++.++.+.. ...+..||.+ ++.. ..+. ....|.+...|+|+..+. .. ..|.|.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~----~~~v~lyd~~-~~~i--~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSM----PAKVTLYDVK-GKKI--FSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred ceEEEEECcCCCEEEEEEccC----CcccEEEcCc-ccEe--Eeec-----CCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence 368899999744444554322 2367889986 3433 3331 245578999999986554 32 246788
Q ss_pred EEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeC
Q 020019 175 KVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 175 ~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
.+|.+... .+.. +. ......++|+||| ++..+.+
T Consensus 129 ~wd~~~~~-~i~~---~~-------~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 129 FWDVRKKK-KIST---FE-------HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEECCCCE-Eeec---cc-------cCcEEEEEEcCCCCEEEEEEe
Confidence 88876322 2111 11 1235789999999 5555443
No 199
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.24 E-value=3.5 Score=36.18 Aligned_cols=171 Identities=13% Similarity=0.104 Sum_probs=94.3
Q ss_pred ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEec
Q 020019 63 FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQL 142 (332)
Q Consensus 63 ~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l 142 (332)
-.+..++.||..+++- .. .|-... ...+.++++.+ -.+.+. +.. ...+..||=++..++..-.+
T Consensus 78 GgDk~v~vwDV~TGkv----~R--r~rgH~----aqVNtV~fNee-sSVv~S-gsf----D~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKV----DR--RFRGHL----AQVNTVRFNEE-SSVVAS-GSF----DSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred CCCceEEEEEcccCee----ee--eccccc----ceeeEEEecCc-ceEEEe-ccc----cceeEEEEcccCCCCccchh
Confidence 3445688888877761 11 332211 25788999886 554443 221 35688899877654332112
Q ss_pred CCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCC
Q 020019 143 SGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS 221 (332)
Q Consensus 143 ~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~ 221 (332)
....+ .. +.+|=.+..+++-+..|.+.++|.. |+... .-+..| .|.+.+++||+--.+-..+
T Consensus 142 dea~D---~V--~Si~v~~heIvaGS~DGtvRtydiR~G~l~s----Dy~g~p--------it~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 142 DEAKD---GV--SSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS----DYFGHP--------ITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred hhhcC---ce--eEEEecccEEEeeccCCcEEEEEeecceeeh----hhcCCc--------ceeEEecCCCCEEEEeecc
Confidence 11011 11 3444455677888888888888854 55331 122233 4899999999544455667
Q ss_pred CeEEEEeCCCCCCc----cceeEEEEecCCCCCCCCeEEEe--CCCeEEEEe
Q 020019 222 GNLFKIDIVDGVGE----GEEIKLIRVAGGPLSFGDGLELL--SPTKLVVAG 267 (332)
Q Consensus 222 ~~i~~id~~~~~~~----~~~~~~v~~~g~~~~~pdGi~~~--~dG~l~va~ 267 (332)
+.|.-+|-++|++- +-.-+++++. --+...+-..+. .||++|+-+
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykld-c~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLD-CCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeee-eeecccceeEEeccCCceEEEEE
Confidence 77888888877431 1011222222 112334445453 568888876
No 200
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.18 E-value=4.4 Score=37.05 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=111.4
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+.+.+++-|..+-+...+|+|..+|-.+... . .+++ .+ .....++..++ |+..++.. +..
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----a--r~ls----aH~~pi~sl~WS~d-gr~LltsS-----~D~ 87 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----A--RMLS----AHVRPITSLCWSRD-GRKLLTSS-----RDW 87 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccch-----h--hhhh----ccccceeEEEecCC-CCEeeeec-----CCc
Confidence 468899999998777778899999998775431 1 1221 11 13468899997 87666654 346
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeC--CCCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDV--TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~--~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+..||+..|.....+.++.|.- +..+.|. -|..++.- ....+..++. ++...+..+.... ...
T Consensus 88 si~lwDl~~gs~l~rirf~spv~------~~q~hp~k~n~~va~~~~~sp~vi~~s~-~~h~~Lp~d~d~d------ln~ 154 (405)
T KOG1273|consen 88 SIKLWDLLKGSPLKRIRFDSPVW------GAQWHPRKRNKCVATIMEESPVVIDFSD-PKHSVLPKDDDGD------LNS 154 (405)
T ss_pred eeEEEeccCCCceeEEEccCccc------eeeeccccCCeEEEEEecCCcEEEEecC-CceeeccCCCccc------ccc
Confidence 78899999999888888866532 2445554 35544432 2345555554 3433322221110 001
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.+.-..+++.|..+++-+..|++..++..+-+ -+..+... .....--|.+...|+.++.|-.
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e----~vas~rit--s~~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLE----CVASFRIT--SVQAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchhe----eeeeeeec--hheeeeEEEEeccCcEEEEecC
Confidence 12223789999444455678889888887642 22222221 1122345778888887777643
No 201
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.17 E-value=4 Score=36.46 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=82.9
Q ss_pred eEEcCCCCEEE-EEecCCeEEEEECCCCCCCccceeeeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 50 AKWDDSGRRFI-VSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 50 ia~d~~g~~~~-~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
+.+-++-..++ .....+++..+|+.++.. .|.. -..++ ....|.+. +.+.+... .+.|+
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~--------~We~--ilg~RiE~sa~vvg---dfVV~GCy------~g~lY 76 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNL--------IWEA--ILGVRIECSAIVVG---DFVVLGCY------SGGLY 76 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcE--------Eeeh--hhCceeeeeeEEEC---CEEEEEEc------cCcEE
Confidence 44555545443 446678899999998872 3432 11111 12234443 33333332 35788
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEe---cCCCCCCcccccCccccC
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSII---SSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~---~~~~~~~p~~~~~~~~~n 204 (332)
.++.++|...+.+...+.. --.-.+|+++.+...-+.++..|.+|+..+--.+- ....|..|
T Consensus 77 fl~~~tGs~~w~f~~~~~v-----k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP---------- 141 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV-----KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP---------- 141 (354)
T ss_pred EEEecchhheeeeeehhhh-----ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc----------
Confidence 8899999665554432111 11245678866544456778888888875533332 11122222
Q ss_pred eEEEcc-CceEEEEeCCCCeEEEEeCCCC
Q 020019 205 GIVYHP-DGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 205 Gi~~~~-dG~Lyva~~~~~~i~~id~~~~ 232 (332)
++++ ++.||++-+ .|++.++...+.
T Consensus 142 --~i~~g~~sly~a~t-~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 --VIAPGDGSLYAAIT-AGAVLAVTKNPY 167 (354)
T ss_pred --eecCCCceEEEEec-cceEEEEccCCC
Confidence 5666 679999865 667888887754
No 202
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.09 E-value=4.1 Score=36.36 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=87.7
Q ss_pred eEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCC--------CCCccceEECCCCcEEE---EeCC
Q 020019 101 GLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDG--------KSCADDVTVDAEGNAYV---TDVT 169 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~--------~~~~ndiavd~dG~lyv---td~~ 169 (332)
|..+- +|.||.-.. ....|.+||++++.+.....|++..-. ...-=|+|+|.+| ||| +...
T Consensus 73 G~vVY--ngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~ 144 (250)
T PF02191_consen 73 GHVVY--NGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDN 144 (250)
T ss_pred CeEEE--CCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCC
Confidence 44443 267777654 246799999999887755666432110 1122479999888 554 4444
Q ss_pred CC--eEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCC---CeE-EEEeCCCCCCccceeEEE
Q 020019 170 GS--KIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS---GNL-FKIDIVDGVGEGEEIKLI 242 (332)
Q Consensus 170 ~~--~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~---~~i-~~id~~~~~~~~~~~~~v 242 (332)
.+ .|-|+|++. +....++.. +..+ ..-|...+. |.||+.+..+ .+| +.+|+.+++. ....+
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~-~~k~------~~~naFmvC--GvLY~~~s~~~~~~~I~yafDt~t~~~---~~~~i 212 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS-YPKR------SAGNAFMVC--GVLYATDSYDTRDTEIFYAFDTYTGKE---EDVSI 212 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec-cCch------hhcceeeEe--eEEEEEEECCCCCcEEEEEEECCCCce---eceee
Confidence 44 466788863 333334322 2111 123444444 8999999875 556 7888887632 22223
Q ss_pred EecCCCCCCCCeEEEeC-CCeEEEEeCCc
Q 020019 243 RVAGGPLSFGDGLELLS-PTKLVVAGNPS 270 (332)
Q Consensus 243 ~~~g~~~~~pdGi~~~~-dG~l~va~~~~ 270 (332)
.+. .......-|..+| |.+||+-+++.
T Consensus 213 ~f~-~~~~~~~~l~YNP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 213 PFP-NPYGNISMLSYNPRDKKLYAWDNGY 240 (250)
T ss_pred eec-cccCceEeeeECCCCCeEEEEECCe
Confidence 443 2334555667776 58899999875
No 203
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=93.89 E-value=2.1 Score=39.07 Aligned_cols=153 Identities=15% Similarity=0.144 Sum_probs=91.3
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..+.....+.++|+..++...+|+|-.|+..++++. . ++- .++ ..-..+.+.+-|.+-..+|+.+ +.
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~----~--Tfk-~~~-~d~~vnsv~~~PKnpeh~iVCN-----rs 414 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL----S--TFK-PLG-TDYPVNSVILLPKNPEHFIVCN-----RS 414 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhh----h--hcc-CCC-CcccceeEEEcCCCCceEEEEc-----CC
Confidence 347777899999998888888999999987766641 2 232 111 1124566666665544455444 35
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+.+++.+.. |++++.+.- +...+..|. ..++.|.|....+-...+.+|.|..- |+..+.+... -.-
T Consensus 415 ntv~imn~q-GQvVrsfsS-GkREgGdFi-~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh----------Ekd 481 (508)
T KOG0275|consen 415 NTVYIMNMQ-GQVVRSFSS-GKREGGDFI-NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH----------EKD 481 (508)
T ss_pred CeEEEEecc-ceEEeeecc-CCccCCceE-EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc----------ccc
Confidence 668888875 566544332 111122333 35678888754444556888888753 6665543211 112
Q ss_pred cCeEEEccCceEEEEeCCCC
Q 020019 203 LNGIVYHPDGFLIVIHTFSG 222 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~ 222 (332)
+-||+-+|..+|..+-...+
T Consensus 482 vIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred ccccccCcccchhhhhcccc
Confidence 45888888877766554444
No 204
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.85 E-value=0.92 Score=43.67 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=72.4
Q ss_pred eEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCC-ccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 50 AKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN-GSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 50 ia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
+.+++.-+.+++. ..+|.|..||.. +..+ .. .|.. .+. ...||.+.|.+-.|+|..+- ..+|.
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~-g~sp---~~--~~~~----~HsAP~~gicfspsne~l~vsVG~-----Dkki~ 234 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQ-GMSP---IF--HASE----AHSAPCRGICFSPSNEALLVSVGY-----DKKIN 234 (673)
T ss_pred eecccccceeeEeeccCCeEEEEecc-CCCc---cc--chhh----hccCCcCcceecCCccceEEEecc-----cceEE
Confidence 5566666655555 567888888865 3321 11 1211 112 24799999985556665542 46899
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCce
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF 182 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~ 182 (332)
.||..+.+....+....| ..-+++.++|.+.+.-...|.|+.+|..++.
T Consensus 235 ~yD~~s~~s~~~l~y~~P------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTYSHP------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred EeecccccccceeeecCC------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999986655443333222 2359999999888888889999999988653
No 205
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.68 E-value=4.6 Score=35.50 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=113.5
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.-+-+..+|+.-++.-.+..|--|.|..+.. +. ++. + -|......+...+ +.-+.+.+ +...+.
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~l----ik--tYs---g-hG~EVlD~~~s~D-nskf~s~G-----gDk~v~ 84 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL----IK--TYS---G-HGHEVLDAALSSD-NSKFASCG-----GDKAVQ 84 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccce----ee--eec---C-CCceeeecccccc-ccccccCC-----CCceEE
Confidence 3466778888555555567788888776652 11 221 1 1223455555554 33233332 245689
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC---ceEEEecCCCCCCcccccCccccC
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG---EFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g---~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
+||.++|++.+.+.- . ..-.|-+.+..+-.+.++-+....+..+|=.. ++.+.++.. ..+..
T Consensus 85 vwDV~TGkv~Rr~rg--H---~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea----------~D~V~ 149 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRG--H---LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA----------KDGVS 149 (307)
T ss_pred EEEcccCeeeeeccc--c---cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh----------cCcee
Confidence 999999999876542 1 35678899998888999887777776666331 233333221 12233
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe--CCceEEEEcCCC
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG--NPSARLVESSDG 279 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~--~~~~~~v~~~dg 279 (332)
.|.+ .++.+++-+..|++.++|...|+ ...-.+ |.+ ...+.+.+||+...+. +...+++....|
T Consensus 150 Si~v--~~heIvaGS~DGtvRtydiR~G~-----l~sDy~-g~p---it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 150 SIDV--AEHEIVAGSVDGTVRTYDIRKGT-----LSSDYF-GHP---ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred EEEe--cccEEEeeccCCcEEEEEeecce-----eehhhc-CCc---ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 4444 36788888889999999998773 211111 122 3568888998866665 333454444444
No 206
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=93.56 E-value=5.6 Score=36.10 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=108.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...-+.|+|+|..|.++-.+..|+-|...+.. +. .+. +..--....++...++ +...++... ...
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN-~~~--lkgHsgAVM~l~~~~d-~s~i~S~gt-----Dk~ 113 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------EN-FWV--LKGHSGAVMELHGMRD-GSHILSCGT-----DKT 113 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccc------cc-eee--eccccceeEeeeeccC-CCEEEEecC-----Cce
Confidence 33457899999988777667888877754322 21 221 1110025678888887 555555542 356
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
++.||.++|+....... ...+.|-+.....|- +..+-+..+.+-.+|...|... .+++ ......
T Consensus 114 v~~wD~~tG~~~rk~k~-----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~------~kyqlt 178 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKG-----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFE------NKYQLT 178 (338)
T ss_pred EEEEecccceeeehhcc-----ccceeeecCccccCCeEEEecCCCceEEEEeecccchh----hccc------cceeEE
Confidence 89999999988765443 135677776555563 5556666666666665433111 0111 123456
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++|..++ .++.+ .-++.|-.+|+.... ... -+.| .-....||.+.++|....++
T Consensus 179 Av~f~d~s~qv~sg-gIdn~ikvWd~r~~d----~~~--~lsG-h~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 179 AVGFKDTSDQVISG-GIDNDIKVWDLRKND----GLY--TLSG-HADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred EEEecccccceeec-cccCceeeeccccCc----ceE--Eeec-ccCceeeEEeccCCCccccc
Confidence 78888777 66554 345567677776431 122 2232 23455688888888877776
No 207
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=93.55 E-value=0.32 Score=42.49 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=74.9
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECC-CCCCCccceeeeEEecccCc--CC--CccceEEEeCCCCeEEEEEeCcCCC
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVP-DDYPPGTVLEEVTLVKDLEL--TG--NGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~-~~~~~~~~~~~~~~~~~~~~--~~--~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
-.-|+..|+|++|.+. .+.+++..+. ... + ++...+.. .+ +.-..|.+|+. |.||.+..+
T Consensus 36 ~~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~------~--~~~~~~~~Ig~g~W~~F~~i~~d~~-G~LYaV~~~---- 100 (229)
T PF14517_consen 36 FRDIAAGPNGRLYAIR--NDGLYRGSPSSSGG------N--TWDSGSKQIGDGGWNSFKFIFFDPT-GVLYAVTPD---- 100 (229)
T ss_dssp -SEEEE-TTS-EEEEE--TTEEEEES---STT----------HHHH-EEEE-S-GGG-SEEEE-TT-S-EEEEETT----
T ss_pred cceEEEcCCceEEEEE--CCceEEecCCccCc------c--cccccCcccccCcccceeEEEecCC-ccEEEeccc----
Confidence 3558899999988766 4588888322 111 1 12211100 01 13457999995 999998753
Q ss_pred ccceEEEEECC-CCcEEEEEecCC-CC-CCCCCccceEECCCCcEEEEeCCCCeEEEE-cCCCceEEEecCCCCCCcccc
Q 020019 122 KYSAVAAYDLS-TWNRLFLTQLSG-PS-DGKSCADDVTVDAEGNAYVTDVTGSKIWKV-GVKGEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 122 ~~~~l~~~d~~-~g~~~~~~~l~~-~~-~~~~~~ndiavd~dG~lyvtd~~~~~I~~v-~~~g~~~~~~~~~~~~~p~~~ 197 (332)
+.|+++... ++...+...... .+ .+-....-+-.+++|.||.-+. .+++++. .+++....++....... .
T Consensus 101 --G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~---~ 174 (229)
T PF14517_consen 101 --GKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVG---G 174 (229)
T ss_dssp ---EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEET-TE-EEEE---SSTT--HHHH-EEEE---S
T ss_pred --cceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcC-CCceEEeCCCCCCCCccccccceec---c
Confidence 467665542 222221110000 00 1123456688899999998874 4477776 55543333322111100 0
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
.......-|.+.++|.||.. -.++.|||-.+.+
T Consensus 175 ~gw~~~~~i~~~~~g~L~~V-~~~G~lyr~~~p~ 207 (229)
T PF14517_consen 175 GGWDSFHFIFFSPDGNLWAV-KSNGKLYRGRPPQ 207 (229)
T ss_dssp SSGGGEEEEEE-TTS-EEEE--ETTEEEEES---
T ss_pred CCcccceEEeeCCCCcEEEE-ecCCEEeccCCcc
Confidence 01122567899999999988 4578899887664
No 208
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=93.53 E-value=5.2 Score=35.66 Aligned_cols=173 Identities=12% Similarity=0.103 Sum_probs=93.4
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.++|.|+|..+.+.-.+..|.-+|..+.+. ....+.. --.+-+...-+ +.+|+..++ .+++-+
T Consensus 111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~---------~~~~~~~--~e~ne~~w~~~-nd~Fflt~G-----lG~v~I 173 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKDDRITFIDARTYKI---------VNEEQFK--FEVNEISWNNS-NDLFFLTNG-----LGCVEI 173 (313)
T ss_pred EEEEcCCCCEEEEecCcccEEEEEecccce---------eehhccc--ceeeeeeecCC-CCEEEEecC-----CceEEE
Confidence 467888887665555567777777553331 1111100 12455666654 778888764 445555
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCCCCcccccCccccCeEE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
+.-..-+++..+.- . .+.+-.|.+||+|+-+.+-+....+.-.|.+.-. .+.+ +.+..| ..-|.
T Consensus 174 LsypsLkpv~si~A--H---~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i--sRldwp--------VRTlS 238 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKA--H---PSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI--SRLDWP--------VRTLS 238 (313)
T ss_pred Eecccccccccccc--C---CcceEEEEECCCCceEeeccccceeeccChhHhhhheee--ccccCc--------eEEEE
Confidence 54443344332221 1 2456678899999877777666666666766321 1111 122222 24678
Q ss_pred EccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCC
Q 020019 208 YHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPT 261 (332)
Q Consensus 208 ~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG 261 (332)
|+-||++..+-+...-|---+.++| ..+..|+..+ + ..-++..|.-
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetG----d~~~eI~~~~-~---t~tVAWHPk~ 284 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETG----DRVWEIPCEG-P---TFTVAWHPKR 284 (313)
T ss_pred eccCcceeeccCccceEEeEecccC----CeEEEeeccC-C---ceeEEecCCC
Confidence 8888866666555554433344454 2455555432 1 2346666653
No 209
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.42 E-value=1.3 Score=42.84 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=64.3
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.++.+|+++++........ ..-...++.|||+ |.++... ...||.+|.+++....+.+...
T Consensus 219 ~i~~~~l~~g~~~~i~~~~------g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g---------- 282 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFN------GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG---------- 282 (425)
T ss_pred eEEEEeccCCccceeeccC------CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc----------
Confidence 3555566655544333332 2223467788885 5555443 4579999988775443332111
Q ss_pred ccCeEEEccCc-eEEEEeCCCC--eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSG--NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~--~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.-..=.++||| +++++....+ +||+.++++. .++.+...+ .....-...+||+.++-.
T Consensus 283 i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~~~riT~~~---~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 283 INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----QVTRLTFSG---GGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----ceeEeeccC---CCCcCccCCCCCCEEEEE
Confidence 11123588999 7766655444 6899999866 344454332 111122345666655554
No 210
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.40 E-value=7.1 Score=36.79 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=111.1
Q ss_pred EEEecCCccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEe
Q 020019 38 YHYHSSSFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~ 116 (332)
..+.+......-++|+|-- +++++...+..|..|+..+++. + ++ +.+|+ ....|.++.+ |.++++..
T Consensus 125 v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---l---i~-l~hpd----~i~S~sfn~d-Gs~l~Ttc 192 (472)
T KOG0303|consen 125 VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---L---IT-LDHPD----MVYSMSFNRD-GSLLCTTC 192 (472)
T ss_pred EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---e---ee-cCCCC----eEEEEEeccC-Cceeeeec
Confidence 3344433344446777764 4555555678899999888763 1 12 22444 4678888886 77776654
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---CCeEEEEcCCCceEEEecCCCCCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---GSKIWKVGVKGEFLSIISSPLFTP 193 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---~~~I~~v~~~g~~~~~~~~~~~~~ 193 (332)
+..+|.+||+++|+++... . .-.+..+.-..+-.+|.++.|-.. .-++-..|++ .+..
T Consensus 193 -----kDKkvRv~dpr~~~~v~e~-~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~----------nl~e 253 (472)
T KOG0303|consen 193 -----KDKKVRVIDPRRGTVVSEG-V---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN----------NLEE 253 (472)
T ss_pred -----ccceeEEEcCCCCcEeeec-c---cccCCCcceeEEeccCceeeeccccccccceeccCcc----------cccC
Confidence 4568999999999987654 2 112456667777778875555322 2233333333 1222
Q ss_pred cccccCccccCeEE---EccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 194 KEWYKNLVGLNGIV---YHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 194 p~~~~~~~~~nGi~---~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|.....+...||+- +|+|- -+|++--+.+.|.-+...... ..+..+..- +...-=.||.+-|.--|=|..
T Consensus 254 P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~---P~~hyln~f-~S~epQRG~g~mPKRGl~Vs~ 327 (472)
T KOG0303|consen 254 PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP---PFVHYLNTF-SSKEPQRGMGFMPKRGLDVSK 327 (472)
T ss_pred cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC---ceeEEeccc-ccCCccccccccccccccchH
Confidence 22122344567776 57886 999998888888555554331 133333321 111112477776664455553
No 211
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.39 E-value=0.31 Score=30.55 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=30.2
Q ss_pred CcEEEEeCCCC-eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEcc
Q 020019 161 GNAYVTDVTGS-KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHP 210 (332)
Q Consensus 161 G~lyvtd~~~~-~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~ 210 (332)
|+||.||.... .|.+.+.+|.-.+.+-.. ....|+||++++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~---------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD---------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES---------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC---------CCCCcCEEEECC
Confidence 57999999999 999999998754332222 234678999874
No 212
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.37 E-value=9.2 Score=38.54 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=101.7
Q ss_pred cceEEcCCCCEEEEEecC------CeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCC
Q 020019 48 ECAKWDDSGRRFIVSFLD------GGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~------g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
.++++-. |.+|++.-.+ ..++++|+.+.+| ..-+.+. .+.-.|+++-. |.||++.+..+.
T Consensus 326 ~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W----------~~~a~M~~~R~~~~v~~l~--g~iYavGG~dg~ 392 (571)
T KOG4441|consen 326 VGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQW----------TPVAPMNTKRSDFGVAVLD--GKLYAVGGFDGE 392 (571)
T ss_pred ccEEEEC-CEEEEEccccCCCcccceEEEecCCCCce----------eccCCccCccccceeEEEC--CEEEEEeccccc
Confidence 3455543 4667665222 3588888876653 3323332 23456777664 899999764333
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC------CCCeEEEEcCCCceEEEecCCCCCCc
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV------TGSKIWKVGVKGEFLSIISSPLFTPK 194 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~------~~~~I~~v~~~g~~~~~~~~~~~~~p 194 (332)
.....+-+||+++.+......+.. .....++++ -+|.||+.-- .-..+.++||.... |..-+.+..+
T Consensus 393 ~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~ 465 (571)
T KOG4441|consen 393 KSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTR 465 (571)
T ss_pred cccccEEEecCCCCcccccCCCCc----ceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccc
Confidence 344568899998876544333311 112223333 3578999743 22568889987442 2112233222
Q ss_pred ccccCccccCeEEEccCceEEEEeCCCC-----eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 195 EWYKNLVGLNGIVYHPDGFLIVIHTFSG-----NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG~Lyva~~~~~-----~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
..-.|++.- ++.||+.-..++ ++.++|+.+. .-..+..- ..-...-|++.. ++++|+.+.
T Consensus 466 ------R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~-----~W~~v~~m-~~~rs~~g~~~~-~~~ly~vGG 530 (571)
T KOG4441|consen 466 ------RSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN-----QWTMVAPM-TSPRSAVGVVVL-GGKLYAVGG 530 (571)
T ss_pred ------cccceEEEE-CCEEEEECCccCCCccceEEEEcCCCC-----ceeEcccC-ccccccccEEEE-CCEEEEEec
Confidence 233466654 678998765433 3678888865 22222211 111223455554 579999963
No 213
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.20 E-value=6.2 Score=37.37 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=63.5
Q ss_pred ceeEEEecC-----CccccceEEcCCCCEE-EEE-e-cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeC
Q 020019 35 THVYHYHSS-----SFFRECAKWDDSGRRF-IVS-F-LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDH 106 (332)
Q Consensus 35 ~~~i~~~~~-----~~~pegia~d~~g~~~-~~~-~-~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~ 106 (332)
-.++++... .+|...-.|.++|+.+ |.+ . ...+++.+|..+++. . ++-..++ ....|..+.+
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-----~--QLTdg~g---~~~~g~~~s~ 90 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-----T--QLTDGPG---DNTFGGFLSP 90 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-----E--E---SS----B-TTT-EE-T
T ss_pred ceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-----E--ECccCCC---CCccceEEec
Confidence 456666432 2577778888999644 444 2 245799999998762 2 2332222 2334566667
Q ss_pred CCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCc-cceEECCCCcEEEEeC-----------------
Q 020019 107 PRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCA-DDVTVDAEGNAYVTDV----------------- 168 (332)
Q Consensus 107 ~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~-ndiavd~dG~lyvtd~----------------- 168 (332)
++..+|.+.. ...|..+|+++.+....+.++ . .-.. ...+++.|+..++...
T Consensus 91 ~~~~~~Yv~~------~~~l~~vdL~T~e~~~vy~~p--~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 91 DDRALYYVKN------GRSLRRVDLDTLEERVVYEVP--D--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp TSSEEEEEET------TTEEEEEETTT--EEEEEE----T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred CCCeEEEEEC------CCeEEEEECCcCcEEEEEECC--c--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence 6566655543 136899999998877777773 2 1111 2233466777665421
Q ss_pred -----CCCeEEEEcCC-CceEEEec
Q 020019 169 -----TGSKIWKVGVK-GEFLSIIS 187 (332)
Q Consensus 169 -----~~~~I~~v~~~-g~~~~~~~ 187 (332)
...+|++++.+ |+...++.
T Consensus 161 ~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp HHHC---EEEEEEETTT--EEEEEE
T ss_pred HHhhCCCceEEEEECCCCceeEEEe
Confidence 13578899976 55555443
No 214
>smart00284 OLF Olfactomedin-like domains.
Probab=93.13 E-value=6.1 Score=35.30 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=87.0
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcC--------CCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--------GNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
|.+||-...+..|.|+|..++.. ..+ ..+...+.. +..-..+++|+. | |||.-......+.=.|.
T Consensus 84 gslYY~~~~s~~iiKydL~t~~v----~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-G-LWvIYat~~~~g~ivvS 156 (255)
T smart00284 84 GSLYFNKFNSHDICRFDLTTETY----QKE-PLLNGAGYNNRFPYAWGGFSDIDLAVDEN-G-LWVIYATEQNAGKIVIS 156 (255)
T ss_pred ceEEEEecCCccEEEEECCCCcE----EEE-EecCccccccccccccCCCccEEEEEcCC-c-eEEEEeccCCCCCEEEE
Confidence 67777555668899999987652 211 222211111 112357889874 5 68885432211122355
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---CCe-EEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---GSK-IWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---~~~-I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
++|+.+-+++..+...-+ .....|.+.+ .|.||++++. ..+ -+.+|..+....... -.|.. .....
T Consensus 157 kLnp~tL~ve~tW~T~~~--k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~-i~f~n-----~y~~~ 226 (255)
T smart00284 157 KLNPATLTIENTWITTYN--KRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLD-IPFEN-----MYEYI 226 (255)
T ss_pred eeCcccceEEEEEEcCCC--cccccccEEE--eeEEEEEccCCCCCcEEEEEEECCCCccceee-eeecc-----ccccc
Confidence 789888888877776322 2344555555 5889999862 233 446776632221111 11211 12345
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~ 229 (332)
..|.++|.. .||+-| ++.+..+++
T Consensus 227 s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 227 SMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred eeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 678999988 999865 455544443
No 215
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.08 E-value=3.7 Score=42.76 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=43.9
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCC---CCCccceEECC-----------------CCcEEEEeC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDG---KSCADDVTVDA-----------------EGNAYVTDV 168 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~---~~~~ndiavd~-----------------dG~lyvtd~ 168 (332)
|+||+|+. .+.|+.+|.++|+.++.++...+... ...++++++-. +++||+..
T Consensus 195 g~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T- 267 (764)
T TIGR03074 195 DTLYLCTP------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT- 267 (764)
T ss_pred CEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec-
Confidence 89999975 35799999999999888765332110 01234444421 23677754
Q ss_pred CCCeEEEEcCC-CceE
Q 020019 169 TGSKIWKVGVK-GEFL 183 (332)
Q Consensus 169 ~~~~I~~v~~~-g~~~ 183 (332)
..++|+.+|.+ |+..
T Consensus 268 ~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 268 SDARLIALDADTGKLC 283 (764)
T ss_pred CCCeEEEEECCCCCEE
Confidence 36788888876 6654
No 216
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.05 E-value=7.8 Score=36.30 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=81.6
Q ss_pred EEEeCCCCe-EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEEC-CCCc--EEEEeC-CCCeEEEE
Q 020019 102 LVLDHPRNR-LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVD-AEGN--AYVTDV-TGSKIWKV 176 (332)
Q Consensus 102 i~vd~~~g~-l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd-~dG~--lyvtd~-~~~~I~~v 176 (332)
+...++ ++ +++.-.... ++...+..+|.++++......-..++ =......+.+- ++++ +++++. +-..|+.+
T Consensus 189 v~W~~d-~~~l~~~~~nR~-q~~~~l~~~d~~tg~~~~~~~e~~~~-Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 189 VGWSPD-GKRLWVQWLNRD-QNRLDLVLCDASTGETRVVLEETSDG-WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEET-TEEEEEEEEETT-STEEEEEEEEECTTTCEEEEEEESSS-SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred ceecCC-CcEEEEEEcccC-CCEEEEEEEECCCCceeEEEEecCCc-ceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 444444 44 666654322 13446778898887654333221111 11233445543 5543 566663 23479999
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC----CCeEEEEeCC-CCCCccceeEEEEecCCCCC
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF----SGNLFKIDIV-DGVGEGEEIKLIRVAGGPLS 250 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~----~~~i~~id~~-~~~~~~~~~~~v~~~g~~~~ 250 (332)
+.+|...+.+....+.. -.=+.+++++ .||+.-.. ...||+++++ ++ ..+.+.-. .
T Consensus 266 ~~~~~~~~~lT~G~~~V---------~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-----~~~~LT~~----~ 327 (353)
T PF00930_consen 266 DLDGGKPRQLTSGDWEV---------TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-----EPKCLTCE----D 327 (353)
T ss_dssp ETTSSEEEESS-SSS-E---------EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-----EEEESSTT----S
T ss_pred cccccceeccccCceee---------cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-----CeEeccCC----C
Confidence 99987655543333321 1246788887 88887765 4589999999 55 34433211 2
Q ss_pred CCC-eEEEeCCCeEEEEe
Q 020019 251 FGD-GLELLSPTKLVVAG 267 (332)
Q Consensus 251 ~pd-Gi~~~~dG~l~va~ 267 (332)
... .+.+.++|+.|+-.
T Consensus 328 ~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 328 GDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp STTEEEEE-TTSSEEEEE
T ss_pred CCceEEEECCCCCEEEEE
Confidence 333 78899999887764
No 217
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.93 E-value=6.5 Score=35.07 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=75.9
Q ss_pred CccceEECCCCc-EEEEe--CCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 151 CADDVTVDAEGN-AYVTD--VTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 151 ~~ndiavd~dG~-lyvtd--~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
.+...++.++|+ +.+.. .....++....++..........+..| .|+++|.+|+..........+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~P------------S~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRP------------SWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccc------------cccCCCCEEEEEcCCCceEEE
Confidence 577799999986 43433 455678888777665554322233333 689999999988765544333
Q ss_pred -eCCCCCCccceeEEEEecCCCCC-CCCeEEEeCCCe--EEEEe-CC--ce---EEEEcCCCceEEEEEeeec--CCCcc
Q 020019 228 -DIVDGVGEGEEIKLIRVAGGPLS-FGDGLELLSPTK--LVVAG-NP--SA---RLVESSDGWETAAVVAKFS--GPVHR 295 (332)
Q Consensus 228 -d~~~~~~~~~~~~~v~~~g~~~~-~pdGi~~~~dG~--l~va~-~~--~~---~~v~~~dg~~~~~~~~~~~--~~~~~ 295 (332)
+...++. ....+..+ ... ....+.+.+||. .++.. .. .. .+++..+| ....+..... .+.+.
T Consensus 93 ~~~~~g~~---~~~~v~~~--~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 93 RDSASGTG---EPVEVDWP--GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EecCCCcc---eeEEeccc--ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-CcceeccceEecccccC
Confidence 2223321 22223332 112 445677788876 22331 11 11 12234444 1222222211 12244
Q ss_pred cceEEEE-ECCeEEEE
Q 020019 296 LATAATV-KDGRVYLN 310 (332)
Q Consensus 296 ~pt~va~-~~g~lyv~ 310 (332)
..+.+.+ .+++|.|.
T Consensus 167 ~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVL 182 (253)
T ss_pred cceeeeecCCCEEEEE
Confidence 5677888 78888884
No 218
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=92.77 E-value=2.5 Score=37.26 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=75.1
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCc----------cceEECCCCc--EEEEeCCCCe--EEEEcCCC-ceEEEecC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCA----------DDVTVDAEGN--AYVTDVTGSK--IWKVGVKG-EFLSIISS 188 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~----------ndiavd~dG~--lyvtd~~~~~--I~~v~~~g-~~~~~~~~ 188 (332)
..|.+||+++........++. .+-..+ .|+|+|.+|- +|-|....+. |.++++.. +....++.
T Consensus 88 ~~ivky~l~~~~~~~~~~lp~--a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T 165 (249)
T KOG3545|consen 88 RNIIKYDLETRTVAGSAALPY--AGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT 165 (249)
T ss_pred cceEEEEeecceeeeeeeccc--cccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeecc
Confidence 458899999865554445532 212233 7899999992 3445544443 35788842 22222221
Q ss_pred CCCCCcccccCccccCeEEEccCceEEEEeCCC---CeE-EEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeC-CCeE
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS---GNL-FKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLS-PTKL 263 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~---~~i-~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~-dG~l 263 (332)
. .. .....+++.+. |.||+.++.+ ..| +.+|..+++. ....++++ ........+-..| |.+|
T Consensus 166 ~-~~------k~~~~~aF~iC--GvLY~v~S~~~~~~~i~yaydt~~~~~---~~~~ipf~-N~y~~~~~idYNP~D~~L 232 (249)
T KOG3545|consen 166 T-LP------KRSAGNAFMIC--GVLYVVHSYNCTHTQISYAYDTTTGTQ---ERIDLPFP-NPYSYATMIDYNPRDRRL 232 (249)
T ss_pred c-cC------CCCcCceEEEe--eeeEEEeccccCCceEEEEEEcCCCce---eccccccc-chhhhhhccCCCccccee
Confidence 1 11 12334667776 8999998853 234 6777776631 11223333 2344455666666 7889
Q ss_pred EEEeCCc
Q 020019 264 VVAGNPS 270 (332)
Q Consensus 264 ~va~~~~ 270 (332)
|+-+|..
T Consensus 233 Y~wdng~ 239 (249)
T KOG3545|consen 233 YAWDNGH 239 (249)
T ss_pred eEecCCc
Confidence 9998875
No 219
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=92.43 E-value=8.5 Score=35.19 Aligned_cols=195 Identities=13% Similarity=0.110 Sum_probs=102.3
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCc---------CC-CccceEEEeCCCCeEEEEEeC
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLEL---------TG-NGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~---------~~-~~~~gi~vd~~~g~l~v~~~~ 117 (332)
.-++++||.++-+...+..|-.+|...--.++.+. +++. ++.. .+ ..++.+.++|. ..+.+...
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~---em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ILiS~s- 191 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPK---EMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ETILISGS- 191 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchh---hhccCCcccCCceEeehhhccCcccceeecch-hheEEecc-
Confidence 45789999877666555566555543100000001 1111 0110 00 14578899995 77777653
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEe-cCCCCCCccc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSII-SSPLFTPKEW 196 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~-~~~~~~~p~~ 196 (332)
+.+.+..||...-...+.... -+.......+.+.|.|.....-+..+.+..+|.... .-++ .++.-.
T Consensus 192 ----rD~tvKlFDfsK~saKrA~K~---~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~q---- 259 (430)
T KOG0640|consen 192 ----RDNTVKLFDFSKTSAKRAFKV---FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQ---- 259 (430)
T ss_pred ----CCCeEEEEecccHHHHHHHHH---hhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCcccc----
Confidence 345677788753222211111 011233456899999986666566666555555422 2222 122111
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.....+.+-+++.|.|||+-+..|.|--+|=-.++ -+..+.-. ......-...+..+|+.+.+.
T Consensus 260 --ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r----Cv~t~~~A-H~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 260 --HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR----CVRTIGNA-HGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred --cccceeEEEecCCccEEEEeccCCcEEeeccccHH----HHHHHHhh-cCCceeeeEEEccCCeEEeec
Confidence 12356888999999999999999988666533221 12222110 011223345667777766664
No 220
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=92.39 E-value=2.7 Score=39.53 Aligned_cols=183 Identities=13% Similarity=0.075 Sum_probs=114.3
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..++++++....|++...+|+|..+|-...+ ++ ..+...+. -+..+..+|..+.+..... .+-|
T Consensus 183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~k------ee-~vL~GHgw---dVksvdWHP~kgLiasgsk------DnlV 246 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------EE-RVLRGHGW---DVKSVDWHPTKGLIASGSK------DNLV 246 (464)
T ss_pred hheeccCCCCceeEEecCCCeEEEEeccCCc------hh-heeccCCC---CcceeccCCccceeEEccC------Ccee
Confidence 4578999998889888889999999865433 22 33433433 3667888887554444333 3457
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC--ceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG--EFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
..||+++|.-+.. +. .-....-.+.+.++|+...|-+....+-.+|... +..++-.+. .-..
T Consensus 247 KlWDprSg~cl~t--lh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk-----------kdv~ 310 (464)
T KOG0284|consen 247 KLWDPRSGSCLAT--LH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK-----------KDVT 310 (464)
T ss_pred EeecCCCcchhhh--hh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch-----------hhhe
Confidence 7799999875432 21 1124455688899999988888877777777552 111111111 1245
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
.++++|=- .|+++-...+.|......... ++..+.. +.-.....|+..|=|.|+.+.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~----p~~~i~~--AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEE----PLGEIPP--AHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccc----cccCCCc--ccccceeeeeccccceeEeec
Confidence 77888877 788887778888666655221 2222221 122345667777888888775
No 221
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.12 E-value=9.3 Score=34.95 Aligned_cols=138 Identities=12% Similarity=0.079 Sum_probs=83.1
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC--cEEEEeCCCCeEEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG--NAYVTDVTGSKIWKV 176 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG--~lyvtd~~~~~I~~v 176 (332)
...++++. . |++.+. ....|.+||++........-. + ....+.+.+++.- +-.++.+.+|.|...
T Consensus 46 itavAVs~---~-~~aSGs----sDetI~IYDm~k~~qlg~ll~--H---agsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 46 ITALAVSG---P-YVASGS----SDETIHIYDMRKRKQLGILLS--H---AGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred eeEEEecc---e-eEeccC----CCCcEEEEeccchhhhcceec--c---ccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 45677763 3 888764 345689999976443321111 1 3456667777763 245566667776666
Q ss_pred cCCCc-eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE
Q 020019 177 GVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL 255 (332)
Q Consensus 177 ~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi 255 (332)
+.+-- ..-.+.. .-...|+|+++|.|.|-.+-.+...+.-+++-.|+. ....++. ..+.-+
T Consensus 113 ~~~~W~~~~slK~----------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~----~~at~v 174 (362)
T KOG0294|consen 113 RVGSWELLKSLKA----------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV----AFVLNLK----NKATLV 174 (362)
T ss_pred EcCCeEEeeeecc----------cccccceeEecCCCceEEEEcCCceeeeehhhcCcc----ceeeccC----Ccceee
Confidence 65421 1111111 123479999999999998888888888888876632 2222332 234458
Q ss_pred EEeCCCeEEEEe
Q 020019 256 ELLSPTKLVVAG 267 (332)
Q Consensus 256 ~~~~dG~l~va~ 267 (332)
.+++.|.-|+..
T Consensus 175 ~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 175 SWSPQGDHFVVS 186 (362)
T ss_pred EEcCCCCEEEEE
Confidence 888888855554
No 222
>PHA02713 hypothetical protein; Provisional
Probab=92.09 E-value=14 Score=37.03 Aligned_cols=99 Identities=7% Similarity=-0.063 Sum_probs=50.8
Q ss_pred eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc-CCCccceEEEEECCCCcEEEEEecCCC
Q 020019 67 GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV-FGNKYSAVAAYDLSTWNRLFLTQLSGP 145 (332)
Q Consensus 67 ~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~-~~~~~~~l~~~d~~~g~~~~~~~l~~~ 145 (332)
.+..+|+.++++. .+...|. .....+.++-. |.||++.+.. .......+..||+++++......++
T Consensus 273 ~v~~yd~~~~~W~-------~l~~mp~--~r~~~~~a~l~--~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~-- 339 (557)
T PHA02713 273 CILVYNINTMEYS-------VISTIPN--HIINYASAIVD--NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI-- 339 (557)
T ss_pred CEEEEeCCCCeEE-------ECCCCCc--cccceEEEEEC--CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--
Confidence 5778888766531 1211121 11223455542 7899985421 1112356889999886643222221
Q ss_pred CCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCCCc
Q 020019 146 SDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVKGE 181 (332)
Q Consensus 146 ~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~g~ 181 (332)
..+.+..++--+|.||+.-.. ...+.++|+...
T Consensus 340 ---~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 340 ---KNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred ---chhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 122222223335789986432 235788888743
No 223
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.07 E-value=8.6 Score=34.41 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
|+..+..-.+|.+|.++..++.. -|.. .-+.. .. --..|.+.|.+|....+ +.++++|+++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~--------~w~f~~~~~v--k~-~a~~d~~~glIycgshd------~~~yalD~~~~ 125 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQ--------IWNFVILETV--KV-RAQCDFDGGLIYCGSHD------GNFYALDPKTY 125 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhh--------eeeeeehhhh--cc-ceEEcCCCceEEEecCC------CcEEEeccccc
Confidence 44444455678899998877741 1211 00100 11 12457766777777653 45788899875
Q ss_pred cEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~ 179 (332)
.-+...+. +..-.-.-++++ +|.||++-. .|+|.+++++
T Consensus 126 ~cVykskc-----gG~~f~sP~i~~g~~sly~a~t-~G~vlavt~~ 165 (354)
T KOG4649|consen 126 GCVYKSKC-----GGGTFVSPVIAPGDGSLYAAIT-AGAVLAVTKN 165 (354)
T ss_pred ceEEeccc-----CCceeccceecCCCceEEEEec-cceEEEEccC
Confidence 54433332 123344567788 688999864 5888888876
No 224
>PHA02790 Kelch-like protein; Provisional
Probab=91.93 E-value=14 Score=36.40 Aligned_cols=177 Identities=10% Similarity=0.033 Sum_probs=83.3
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC--CCeEEEEcCCCceEEEe
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT--GSKIWKVGVKGEFLSII 186 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~--~~~I~~v~~~g~~~~~~ 186 (332)
+.+|++.+.........+..||+.+++......++ ..+.+..++.-+|.||+.-.. ...+.++++... .|.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~-----~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n--~W~ 344 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN-----SPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA--AWV 344 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC-----chhhcceEEEECCEEEEECCcCCCCceEEEECCCC--eEE
Confidence 78888854211112346788999876643332332 122222223335789986432 245777776522 222
Q ss_pred cCCCCCCcccccCccccCeEEEccCceEEEEeCC---CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeE
Q 020019 187 SSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF---SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKL 263 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~---~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l 263 (332)
..+.+..| ..+....++ +|.||+.-.. ...+.++|+.+. .=+.+... +.+.....+..-+|+|
T Consensus 345 ~~~~l~~~-----r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~-----~W~~~~~m--~~~r~~~~~~~~~~~I 410 (480)
T PHA02790 345 NMPSLLKP-----RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHD-----QWQFGPST--YYPHYKSCALVFGRRL 410 (480)
T ss_pred ECCCCCCC-----CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCC-----EEEeCCCC--CCccccceEEEECCEE
Confidence 22222222 122223333 6799987432 245667887754 11111110 1111122223346899
Q ss_pred EEEeCCceEEEEc-CCCceEEEEEeeecCCCcccceEEEEECCeEEEEEe
Q 020019 264 VVAGNPSARLVES-SDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHM 312 (332)
Q Consensus 264 ~va~~~~~~~v~~-~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~ 312 (332)
||.+...-+ ... .+-|.. ...+..+ +.-.++++-+|+|||...
T Consensus 411 Yv~GG~~e~-ydp~~~~W~~---~~~m~~~--r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 411 FLVGRNAEF-YCESSNTWTL---IDDPIYP--RDNPELIIVDNKLLLIGG 454 (480)
T ss_pred EEECCceEE-ecCCCCcEeE---cCCCCCC--ccccEEEEECCEEEEECC
Confidence 999753222 222 223432 1222112 222345668999999544
No 225
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.91 E-value=3.1 Score=39.38 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=55.5
Q ss_pred EEECCCCcEEEEEecCCCCC-C-CCCccceEECCCCc--EEEEeCC-CCeEEEEcCCC-ceEEEecCCCCCCcccccCcc
Q 020019 128 AYDLSTWNRLFLTQLSGPSD-G-KSCADDVTVDAEGN--AYVTDVT-GSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~-~-~~~~ndiavd~dG~--lyvtd~~-~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~ 201 (332)
..|+.||..+. +|..+.. . ..+.+.=++.+||+ ||.++.. ...+|.+|.+. +..++-..+. .
T Consensus 14 ~~D~~TG~~Vt--rLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g----------~ 81 (386)
T PF14583_consen 14 WIDPDTGHRVT--RLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG----------D 81 (386)
T ss_dssp EE-TTT--EEE--E-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----------B
T ss_pred EeCCCCCceEE--EecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC----------C
Confidence 35888886553 3432111 1 14566677788885 4556643 45799999874 4444322110 1
Q ss_pred ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 202 GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
...|..++++. .||+.. ...+|+++++++.+ ......++ .....-.....++|+++++.
T Consensus 82 ~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e----~~~vy~~p-~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE----ERVVYEVP-DDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp -TTT-EE-TTSSEEEEEE-TTTEEEEEETTT------EEEEEE---TTEEEEEEEEE-TTSSEEEE
T ss_pred CccceEEecCCCeEEEEE-CCCeEEEEECCcCc----EEEEEECC-cccccccceeeCCCccEEEE
Confidence 22367788888 776543 44689999999872 23333444 23222223345677777765
No 226
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.62 E-value=13 Score=35.73 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=102.9
Q ss_pred cceEEcCCCCEEEEEecCCe-EEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRFIVSFLDGG-IGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~-I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
+-+-+.++++..+++..++. +..+|..+.. + + .++.... ..+....+.|.++.+.++... .+.+
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v-~-~~l~~ht----DYVR~g~~~~~~~hivvtGsY-----Dg~v 178 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----V-Q-AELSGHT----DYVRCGDISPANDHIVVTGSY-----DGKV 178 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcE----E-E-EEecCCc----ceeEeeccccCCCeEEEecCC-----CceE
Confidence 44668888887777744444 5555554332 1 1 1222111 256677778876666665433 3578
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC--CCceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV--KGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~--~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
..||.++.. .+..+++. ......+..-|.|.++++..+ +.|-.+|. .|+......+ .....+
T Consensus 179 rl~DtR~~~-~~v~elnh----g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~----------H~KtVT 242 (487)
T KOG0310|consen 179 RLWDTRSLT-SRVVELNH----GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN----------HNKTVT 242 (487)
T ss_pred EEEEeccCC-ceeEEecC----CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc----------ccceEE
Confidence 889998764 33344531 122335667788888888654 44444453 4443321111 122457
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.+++..++ .|+-+ ...+.+-.|+..+- +.+..+..++ + .=.|++.+|+.-.|++.
T Consensus 243 cL~l~s~~~rLlS~-sLD~~VKVfd~t~~----Kvv~s~~~~~-p---vLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 243 CLRLASDSTRLLSG-SLDRHVKVFDTTNY----KVVHSWKYPG-P---VLSIAVSPDDQTVVIGM 298 (487)
T ss_pred EEEeecCCceEeec-ccccceEEEEccce----EEEEeeeccc-c---eeeEEecCCCceEEEec
Confidence 89999999 66654 55666777776554 2455555553 2 23578888877666653
No 227
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.56 E-value=2.4 Score=39.32 Aligned_cols=142 Identities=12% Similarity=0.190 Sum_probs=89.6
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~ 179 (332)
..+.++|-.-.+..+.. ....|..||.+.++++..+.+ ...+|.|++.|++..|++......+|.+|..
T Consensus 191 ~svkfNpvETsILas~~-----sDrsIvLyD~R~~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCA-----SDRSIVLYDLRQASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred eEEecCCCcchheeeec-----cCCceEEEecccCCccceeee------eccccceecCccccceeeccccccceehhhh
Confidence 45566664333444432 234688999998887766554 3688999999988788888888899999875
Q ss_pred Cc--eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 180 GE--FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 180 g~--~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
-- .+.+..+ .......+.|+|-|.=+|+-+....|.-+....+.+ ..+-.. .-+...-++..
T Consensus 260 ~l~~p~~v~~d----------hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-----RdiYht-kRMq~V~~Vk~ 323 (433)
T KOG0268|consen 260 NLSRPLNVHKD----------HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-----RDIYHT-KRMQHVFCVKY 323 (433)
T ss_pred hhcccchhhcc----------cceeEEEeccCCCcchhccccccceEEEeecCCCcc-----hhhhhH-hhhheeeEEEE
Confidence 21 1111111 112345789999997777777777776666554422 111111 23344557778
Q ss_pred eCCCeEEEEeC
Q 020019 258 LSPTKLVVAGN 268 (332)
Q Consensus 258 ~~dG~l~va~~ 268 (332)
..|.+..+++.
T Consensus 324 S~Dskyi~SGS 334 (433)
T KOG0268|consen 324 SMDSKYIISGS 334 (433)
T ss_pred eccccEEEecC
Confidence 88878777763
No 228
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.47 E-value=11 Score=34.49 Aligned_cols=176 Identities=14% Similarity=0.201 Sum_probs=97.0
Q ss_pred cceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCC--eEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRN--RLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g--~l~v~~~~~~~~~~~ 124 (332)
..+|++ | .|+++ ..+-+|..+|...... .. .+....+ ..+.+.+.+..- .|.-+.. .+
T Consensus 47 tavAVs--~-~~~aSGssDetI~IYDm~k~~q----lg--~ll~Hag----sitaL~F~~~~S~shLlS~sd------DG 107 (362)
T KOG0294|consen 47 TALAVS--G-PYVASGSSDETIHIYDMRKRKQ----LG--ILLSHAG----SITALKFYPPLSKSHLLSGSD------DG 107 (362)
T ss_pred eEEEec--c-eeEeccCCCCcEEEEeccchhh----hc--ceecccc----ceEEEEecCCcchhheeeecC------CC
Confidence 445665 3 46555 6677899999765441 11 2332211 456677776421 4444432 45
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.|.+|+..+.+.. -.+.+ . ....||+++.|.|.|-++-.+.+.+.-.+. .|+.....+-. ..+
T Consensus 108 ~i~iw~~~~W~~~--~slK~-H--~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-----------~~a 171 (362)
T KOG0294|consen 108 HIIIWRVGSWELL--KSLKA-H--KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-----------NKA 171 (362)
T ss_pred cEEEEEcCCeEEe--eeecc-c--ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-----------Ccc
Confidence 7889998664333 23321 1 244999999999999988777776666663 34433222111 123
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.-|.|+|.| +.++.- .++|-.+.+++.+ ...++..+ ..+-.+.+...+.|+|...
T Consensus 172 t~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~----v~~~i~~~----~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSG--RNKIDIYQLDNAS----VFREIENP----KRILCATFLDGSELLVGGD 227 (362)
T ss_pred eeeEEcCCCCEEEEEe--ccEEEEEecccHh----Hhhhhhcc----ccceeeeecCCceEEEecC
Confidence 458999999 666654 3445444444321 12222221 2334455555666777753
No 229
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=12 Score=35.41 Aligned_cols=183 Identities=11% Similarity=0.182 Sum_probs=95.2
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEE-CCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVA-VPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
-+++..+|+.+-+.-.+|.+..++ |...+ ....+. .+.....|.+.+| |.+.+.... . ...
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----------~l~e~~-~~~eV~DL~FS~d-gk~lasig~-----d-~~~ 210 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLT----------ILEEIA-HHAEVKDLDFSPD-GKFLASIGA-----D-SAR 210 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchh----------hhhhHh-hcCccccceeCCC-CcEEEEecC-----C-ceE
Confidence 366777776665554567666666 54222 111111 1235788999997 887776642 2 567
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCC---cEEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG---NAYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG---~lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+|+.++|....+.. |.++.-...-+.+..|+ .+|+.... .+.|...+.. .+-.+..+........+..
T Consensus 211 VW~~~~g~~~a~~t---~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~----~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 211 VWSVNTGAALARKT---PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS----LWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred EEEeccCchhhhcC---CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee----eeccccccchhhhhhccCc
Confidence 89999884433221 11111222223333332 57766543 2333332211 1111100000000112335
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK 262 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~ 262 (332)
...+++++||++...-+.+|.|..++..+- +..+.++- .+.....++++.||-+
T Consensus 284 iSsl~VS~dGkf~AlGT~dGsVai~~~~~l----q~~~~vk~--aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLALGTMDGSVAIYDAKSL----QRLQYVKE--AHLGFVTGLTFSPDSR 337 (398)
T ss_pred ceeEEEcCCCcEEEEeccCCcEEEEEecee----eeeEeehh--hheeeeeeEEEcCCcC
Confidence 678899999966655667888988887643 12333321 2445678899988744
No 230
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.37 E-value=14 Score=37.57 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+++++.|.++-+.-.++++-+||..++.. +. .+-..|+ -+..+.++++-++ |+...+. ..+.+.+
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th--~fkG~gG----vVssl~F~~~~~~-~lL~sg~---~D~~v~v 175 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYC----TH--SFKGHGG----VVSSLLFHPHWNR-WLLASGA---TDGTVRV 175 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEE----EE--EecCCCc----eEEEEEeCCccch-hheeecC---CCceEEE
Confidence 478899885444445678999999876642 22 3332233 3567888886444 3222221 2467889
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC-ceEEEecCCCCCCcccccCccccCeEE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG-EFLSIISSPLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g-~~~~~~~~~~~~~p~~~~~~~~~nGi~ 207 (332)
||+++... ....+ ....+...++++.+|+.-.++-.....|+..|... +....+ |.++ ..-+++
T Consensus 176 wnl~~~~t-cl~~~---~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l--p~ye---------~~E~vv 240 (775)
T KOG0319|consen 176 WNLNDKRT-CLHTM---ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL--PLYE---------SLESVV 240 (775)
T ss_pred EEcccCch-HHHHH---HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee--chhh---------heeeEE
Confidence 99986543 00111 01134566788888887666666666777776531 111111 2221 223455
Q ss_pred EccC-----ceEEEEeCCCCeEEEEeCCCC
Q 020019 208 YHPD-----GFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 208 ~~~d-----G~Lyva~~~~~~i~~id~~~~ 232 (332)
+-++ |.++++-..++.+..++.+++
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccc
Confidence 5545 556666677887878888765
No 231
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=91.34 E-value=0.18 Score=30.93 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.7
Q ss_pred CCccceEECCCCcEEEEeCCC
Q 020019 150 SCADDVTVDAEGNAYVTDVTG 170 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~ 170 (332)
..+++|++|++|++||+-...
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 568999999999999986543
No 232
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.29 E-value=11 Score=34.24 Aligned_cols=94 Identities=9% Similarity=0.040 Sum_probs=55.7
Q ss_pred ceeEEEecCCc-cccceEEcCC-CCEEEEEecCCeEEEEECCC-CCCCccceeeeEEecccCcCCCccceEEEeCCCCeE
Q 020019 35 THVYHYHSSSF-FRECAKWDDS-GRRFIVSFLDGGIGQVAVPD-DYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRL 111 (332)
Q Consensus 35 ~~~i~~~~~~~-~pegia~d~~-g~~~~~~~~~g~I~~vd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l 111 (332)
-.++++..+.. ....++++|. ..++..+.++++|..++..+ +.+ ......+.+ ..+..++...+..++
T Consensus 17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-----~~ka~~~~~----~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-----VPKAQQSHD----GPVLDVCWSDDGSKV 87 (347)
T ss_pred ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcc-----cchhhhccC----CCeEEEEEccCCceE
Confidence 45677755433 5567999994 45555668888765555443 332 100111111 246788888875567
Q ss_pred EEEEeCcCCCccceEEEEECCCCcEEEEEecC
Q 020019 112 LVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 112 ~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~ 143 (332)
|....+ +.+..||+.++++.+.....
T Consensus 88 f~g~~D------k~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 88 FSGGCD------KQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred EeeccC------CceEEEEccCCCeeeeeecc
Confidence 776654 45677899999876654433
No 233
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.04 E-value=12 Score=34.26 Aligned_cols=125 Identities=11% Similarity=0.096 Sum_probs=72.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC-C-------CCCCCccceEEC----CCCcEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP-S-------DGKSCADDVTVD----AEGNAYV 165 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~-~-------~~~~~~ndiavd----~dG~lyv 165 (332)
+.+.|..+++ |.++|+... ...|+++|.++|++++.. .++ . ..-..-+|..+- ++++|-+
T Consensus 145 HiNsV~~~~~-G~yLiS~R~-----~~~i~~I~~~tG~I~W~l--gG~~~~df~~~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 145 HINSVDKDDD-GDYLISSRN-----TSTIYKIDPSTGKIIWRL--GGKRNSDFTLPATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred EeeeeeecCC-ccEEEEecc-----cCEEEEEECCCCcEEEEe--CCCCCCcccccCCcEeeccCCEEeccCCCCCEEEE
Confidence 5688988886 887777653 567999999999987654 222 0 001223444444 4455544
Q ss_pred EeC----------CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 166 TDV----------TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 166 td~----------~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
=|. ..+.|+.+|+..+...+...-. ..|..... ...-..-.-|+|+++|+....+++..++++..
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~~s-~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~ 291 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGFYS-PSQGSAQRLPNGNVLIGWGNNGRISEFTPDGE 291 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCcccc-cCCCcceECCCCCEEEecCCCceEEEECCCCC
Confidence 333 4578888998865443322100 00000000 01112334567889999999999999988743
No 234
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=91.04 E-value=12 Score=34.23 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=102.0
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec-ccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK-DLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...+.++|.|..+++......+..+|..+.+ .+.+ .|+... .+...+...+. ++|||... +.+
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q---------cfvsanPd~qht~ai~~V~Ys~t-~~lYvTaS-----kDG 283 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ---------CFVSANPDDQHTGAITQVRYSST-GSLYVTAS-----KDG 283 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEecccee---------EeeecCcccccccceeEEEecCC-ccEEEEec-----cCC
Confidence 3578999999988777656666666655443 2433 354332 25677888885 99999864 456
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCC---eEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS---KIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~---~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.|..||.-+++-+..+.- .. +++-.-...+..+|. |+-.++.. .+|.+........+.+... ... +..
T Consensus 284 ~IklwDGVS~rCv~t~~~--AH-~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~-tgr----q~~ 354 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGN--AH-GGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTGRMLKEYTGAGT-TGR----QKH 354 (430)
T ss_pred cEEeeccccHHHHHHHHh--hc-CCceeeeEEEccCCe-EEeecCCcceeeeeeecCCceEEEEecCCc-ccc----hhh
Confidence 788899876653322221 11 123333456677775 44444433 3444544333333322211 000 111
Q ss_pred ccCeEEEccC-ceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 202 GLNGIVYHPD-GFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 202 ~~nGi~~~~d-G~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
..+.+ |+.. .++..-|..++.+..+|..+. ..+....+. .-+.+.-+.-.|.+-.|++.
T Consensus 355 rtqAv-FNhtEdyVl~pDEas~slcsWdaRta----dr~~l~slg--Hn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 355 RTQAV-FNHTEDYVLFPDEASNSLCSWDARTA----DRVALLSLG--HNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred hhhhh-hcCccceEEccccccCceeeccccch----hhhhhcccC--CCCCceEEEeCCCCCceeee
Confidence 22222 3333 366666777888888887754 123222222 22334455555666666664
No 235
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=90.96 E-value=11 Score=33.32 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=97.5
Q ss_pred eEEEec--CCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEe--c--ccCcCCCccceEEEeCCCCe
Q 020019 37 VYHYHS--SSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLV--K--DLELTGNGSLGLVLDHPRNR 110 (332)
Q Consensus 37 ~i~~~~--~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~gi~vd~~~g~ 110 (332)
...+.+ .+...-||.+.|....+|.-...++||.+++.++.. +.. . .+.+. ....|+-++|.-+|
T Consensus 17 ~~~vtGL~~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~a--------T~vg~s~~~~al~-g~~~gvDFNP~aDR 87 (236)
T PF14339_consen 17 SVAVTGLAAGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAA--------TPVGASPLTVALS-GTAFGVDFNPAADR 87 (236)
T ss_pred cEEeecccCCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeE--------EEeeccccccccc-CceEEEecCcccCc
Confidence 345555 344667899998855555555579999999998863 222 1 11122 23788999998899
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEE-ecCCCC-C---C-CCCccceEECCC------C-cEEEEeCCCCeEEEEc
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLT-QLSGPS-D---G-KSCADDVTVDAE------G-NAYVTDVTGSKIWKVG 177 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~-~l~~~~-~---~-~~~~ndiavd~d------G-~lyvtd~~~~~I~~v~ 177 (332)
|-|.... +.-+++++++|.+...- .+..+. + + ....-+.|.... . .+|--|...+++++.+
T Consensus 88 lRvvs~~------GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 88 LRVVSNT------GQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred EEEEccC------CcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence 9998653 33467888888743221 121111 0 0 111112222211 2 3677777777777774
Q ss_pred -CC-CceEEEecCCCCCCcccccCccccCeEEEccC---c-eEEEEeC-CCCeEEEEeCCCCC
Q 020019 178 -VK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPD---G-FLIVIHT-FSGNLFKIDIVDGV 233 (332)
Q Consensus 178 -~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~d---G-~Lyva~~-~~~~i~~id~~~~~ 233 (332)
|. |.+..+-.... ......|+.+.++ + ..|.... ...++|+||+.+++
T Consensus 162 ppN~GtL~~vG~LGv--------d~~~~~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG~ 216 (236)
T PF14339_consen 162 PPNDGTLNTVGPLGV--------DAAGDAGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTGA 216 (236)
T ss_pred CCCCCcEEeeecccc--------ccCcccceeeecCCCcceEEEEEecCCCcEEEEEECCCcc
Confidence 33 55443311100 1123456666641 2 4444432 23689999999884
No 236
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=90.91 E-value=13 Score=34.21 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=82.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
...+++++.||.-+.+...++.|..|+..+-+.. +.+.+-..... .+|.-+++.||-.-+.|.... .+.
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~-----g~~ 156 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----EHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR-----GNK 156 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----hhhHhhccccC--CCceEEEECCCcceEEEEEcc-----CCE
Confidence 3457899999987766677888888886653210 11111111122 267788888863333333332 245
Q ss_pred EEEEECCC---CcEE-EEE--e-cCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 126 VAAYDLST---WNRL-FLT--Q-LSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 126 l~~~d~~~---g~~~-~~~--~-l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
|.+|.... |... ..+ + +.-+..-..-.-++-+..++..+.+.+....|...+..|+.+..++..
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn--------- 227 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN--------- 227 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc---------
Confidence 66664421 2211 011 1 100111011122244433344455667777888888888877655432
Q ss_pred CccccCeEEEccCceEEEEeCCCC--eEEEE
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSG--NLFKI 227 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~--~i~~i 227 (332)
+..-..-+++|+|+...+...+- ++|.+
T Consensus 228 -q~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 228 -QSSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred -cccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 22344678999994444444444 44443
No 237
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=13 Score=33.95 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=85.4
Q ss_pred CCccceEECCCCcEEEEeCCCCe-EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSK-IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKI 227 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~-I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~i 227 (332)
...+|+.+..+ -+|++|+.+|- |+-+..-.+.... .. +. ......|+.++ | ++||++...+ +..+
T Consensus 87 ~l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~-~~--ln------t~gyaygv~vs--Gn~aYVadlddg-fLiv 153 (370)
T COG5276 87 DLFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLI-GF--LN------TDGYAYGVYVS--GNYAYVADLDDG-FLIV 153 (370)
T ss_pred hhhheeEeccc-EEEEEcCCCceEEEeccCCCCccee-cc--cc------CCceEEEEEec--CCEEEEeeccCc-EEEE
Confidence 45677888765 59999987664 3333322232211 00 00 01223455564 6 9999998766 6678
Q ss_pred eCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CCceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCe
Q 020019 228 DIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NPSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGR 306 (332)
Q Consensus 228 d~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~ 306 (332)
|..+++. .+..-+...++ .-...+++. .+.-|++. +++..++...+. ..-++++..... ....++.+.+++
T Consensus 154 dvsdpss-P~lagrya~~~---~d~~~v~IS-Gn~AYvA~~d~GL~ivDVSnp-~sPvli~~~n~g--~g~~sv~vsdnr 225 (370)
T COG5276 154 DVSDPSS-PQLAGRYALPG---GDTHDVAIS-GNYAYVAWRDGGLTIVDVSNP-HSPVLIGSYNTG--PGTYSVSVSDNR 225 (370)
T ss_pred ECCCCCC-ceeeeeeccCC---CCceeEEEe-cCeEEEEEeCCCeEEEEccCC-CCCeEEEEEecC--CceEEEEecCCe
Confidence 8886631 01111122211 111245554 45789995 445566665554 333455543311 012345557888
Q ss_pred EEE----EEecCccccCCccceeeeeec
Q 020019 307 VYL----NHMLGFGYPKKKHALVEAVFS 330 (332)
Q Consensus 307 lyv----~~~~g~~~~~~~~~~~~~~~~ 330 (332)
.|+ ..-+-.+++..++|+.-..|.
T Consensus 226 ~y~vvy~egvlivd~s~~ssp~~~gsye 253 (370)
T COG5276 226 AYLVVYDEGVLIVDVSGPSSPTVFGSYE 253 (370)
T ss_pred eEEEEcccceEEEecCCCCCceEeeccc
Confidence 886 345556677777777766654
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.73 E-value=14 Score=36.48 Aligned_cols=176 Identities=9% Similarity=0.125 Sum_probs=94.1
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN 135 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~ 135 (332)
..+|++.. ...|||+.+..|.+ +. .+. ....+.+.+.+.+- +.|++|.. ..+.+-.||+++..
T Consensus 146 cDly~~gs-g~evYRlNLEqGrf----L~--P~~----~~~~~lN~v~in~~-hgLla~Gt-----~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 146 CDLYLVGS-GSEVYRLNLEQGRF----LN--PFE----TDSGELNVVSINEE-HGLLACGT-----EDGVVEFWDPRDKS 208 (703)
T ss_pred ccEEEeec-CcceEEEEcccccc----cc--ccc----cccccceeeeecCc-cceEEecc-----cCceEEEecchhhh
Confidence 44554443 46799999988863 22 121 11125677888886 55666654 24678889998765
Q ss_pred EEEEEecCC-----CCC-CCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEc
Q 020019 136 RLFLTQLSG-----PSD-GKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYH 209 (332)
Q Consensus 136 ~~~~~~l~~-----~~~-~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~ 209 (332)
......... |+. ....+..+.+..+|--.-.-+..|.|+.+|...+...+..+..+..| ..-|.|-
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p--------i~~l~~~ 280 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP--------IKKLDWQ 280 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc--------eeeeccc
Confidence 444333311 121 12457778888887323334567899999876543333323233222 1233332
Q ss_pred cC--c-eEEEEeCCCCeEEE-EeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEe
Q 020019 210 PD--G-FLIVIHTFSGNLFK-IDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAG 267 (332)
Q Consensus 210 ~d--G-~Lyva~~~~~~i~~-id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~ 267 (332)
+. + .|+-.+. ++.| ++..+|+ ....+. +......+|+-++ |-+++++
T Consensus 281 ~~~~q~~v~S~Dk---~~~kiWd~~~Gk----~~asiE----pt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 281 DTDQQNKVVSMDK---RILKIWDECTGK----PMASIE----PTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred ccCCCceEEecch---HHhhhcccccCC----ceeecc----ccCCcCceeeecCCceEEEec
Confidence 22 3 5554443 3444 3455663 222222 2233567888887 4445554
No 239
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=90.60 E-value=14 Score=35.95 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=66.0
Q ss_pred eEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 155 VTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 155 iavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
+...+-- .+..+.+..|.|..+|..|+-..+.-...-.+ -..||||+|.. .|+|+-....+|+-+|....
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA--------P~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA--------PCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC--------CcCcceecCCccceEEEecccceEEEeecccc
Confidence 3444543 36666777788888887776332211111112 24799999999 89999888999999998855
Q ss_pred CCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEE
Q 020019 233 VGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARL 273 (332)
Q Consensus 233 ~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~ 273 (332)
. ....+... .++ ..+++.++|..+++++...++
T Consensus 242 ~----s~~~l~y~-~Pl---stvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 242 A----STDRLTYS-HPL---STVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred c----ccceeeec-CCc---ceeeecCCceEEEeecCCceE
Confidence 3 23334333 344 357888888888887654343
No 240
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.51 E-value=12 Score=33.33 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=86.0
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC--------CccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG--------NGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
+|.+||-.....+|.|+|..++.. ..+..+. ..+..+ ..-..+++|+. | |||.-......+.=.|
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v----~~~~~L~-~A~~~n~~~y~~~~~t~iD~AvDE~-G-LWvIYat~~~~g~ivv 150 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSV----VARRELP-GAGYNNRFPYYWSGYTDIDFAVDEN-G-LWVIYATEDNNGNIVV 150 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcE----EEEEECC-ccccccccceecCCCceEEEEEcCC-C-EEEEEecCCCCCcEEE
Confidence 467888777788999999987652 2221221 111111 12357889873 5 6888653221122346
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC---Ce-EEEEcCC-CceEEEecCCCCCCcccccCcc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG---SK-IWKVGVK-GEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~---~~-I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.++|+++-+++..+...- ......|.+.+ .|-||++++.. .. -+.+|.. ++... .. -.|.. ...
T Consensus 151 skld~~tL~v~~tw~T~~--~k~~~~naFmv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~-~~-i~f~~-----~~~ 219 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNTSY--PKRSAGNAFMV--CGVLYATDSYDTRDTEIFYAFDTYTGKEED-VS-IPFPN-----PYG 219 (250)
T ss_pred EeeCcccCceEEEEEecc--CchhhcceeeE--eeEEEEEEECCCCCcEEEEEEECCCCceec-ee-eeecc-----ccC
Confidence 678998888877776532 22344554444 58899998764 33 3567765 33221 11 11211 123
Q ss_pred ccCeEEEccCc-eEEEEeCC
Q 020019 202 GLNGIVYHPDG-FLIVIHTF 220 (332)
Q Consensus 202 ~~nGi~~~~dG-~Lyva~~~ 220 (332)
....|.++|.. .||+-|.+
T Consensus 220 ~~~~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 220 NISMLSYNPRDKKLYAWDNG 239 (250)
T ss_pred ceEeeeECCCCCeEEEEECC
Confidence 56789999988 99987653
No 241
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=90.50 E-value=17 Score=35.00 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=88.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccc--e--eeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCC
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTV--L--EEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGN 121 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~ 121 (332)
....+-|++.|.++.+...++++-.+.-.+...-.++ . +.++....|. ..+.-.+..|...+...
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~------g~v~~n~~~~~~l~sas----- 429 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT------GPVTSNPNMNLMLASAS----- 429 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC------CCccCCCcCCceEEEee-----
Confidence 3456889999998888887888777764333210000 0 0001111111 11222333233333322
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCc
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~ 200 (332)
..+.|..||.+.|.....+. .......++++.|+|+...+-+..++|...+.. |+...-+.. .
T Consensus 430 ~dstV~lwdv~~gv~i~~f~-----kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-----------~ 493 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLM-----KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-----------T 493 (524)
T ss_pred cCCeEEEEEccCCceeEeec-----cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-----------C
Confidence 23568889999888765431 113445679999999888888888988887755 454332211 1
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~ 229 (332)
.+.+-++|+.+| .|-++ ...+.+..+|+
T Consensus 494 ~~Ifel~Wn~~G~kl~~~-~sd~~vcvldl 522 (524)
T KOG0273|consen 494 GGIFELCWNAAGDKLGAC-ASDGSVCVLDL 522 (524)
T ss_pred CeEEEEEEcCCCCEEEEE-ecCCCceEEEe
Confidence 335678999999 55544 44455555554
No 242
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=90.40 E-value=15 Score=34.23 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=106.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
..+++++++..-.+|+...++.|--+|....+. +. .+.. -+. +++++.++|. -++.+... +.+.
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv----IR--~YhG--HlS--~V~~L~lhPT-ldvl~t~g-----rDst 258 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV----IR--HYHG--HLS--GVYCLDLHPT-LDVLVTGG-----RDST 258 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhh----HH--Hhcc--ccc--eeEEEecccc-ceeEEecC-----Ccce
Confidence 668899998876555557778888888876552 22 2321 122 6889999996 55555543 3456
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC-CCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA-EGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~-dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+.+||.++...+ ..+.+.. .-...+.+.+ |+. .+|.+..+.|--.|.. |+....+-+. ....
T Consensus 259 ~RvWDiRtr~~V--~~l~GH~---~~V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~tlt~h----------kksv 322 (460)
T KOG0285|consen 259 IRVWDIRTRASV--HVLSGHT---NPVASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMITLTHH----------KKSV 322 (460)
T ss_pred EEEeeecccceE--EEecCCC---CcceeEEeecCCCc-eEEecCCceEEEeeeccCceeEeeecc----------ccee
Confidence 778999875543 3343211 2223344444 343 4455666666666643 5543322111 1234
Q ss_pred CeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe-CCceEEEEcCCC
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG-NPSARLVESSDG 279 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg 279 (332)
..++++|+-.+|.+...+ .|-.+++..+. .... ++| .-.-...|+..+||-+++.. |+..+.-+..+|
T Consensus 323 ral~lhP~e~~fASas~d-nik~w~~p~g~----f~~n--lsg-h~~iintl~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPD-NIKQWKLPEGE----FLQN--LSG-HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eEEecCCchhhhhccCCc-cceeccCCccc----hhhc--ccc-ccceeeeeeeccCceEEEcCCceEEEEEecCcC
Confidence 588999998888765544 46566665441 2322 221 11223456666666444443 343343344554
No 243
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=90.23 E-value=13 Score=33.30 Aligned_cols=153 Identities=11% Similarity=0.111 Sum_probs=88.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
....+|+.|.|+.+.+...+.++..+...++++ +.+..++.++ +-+.+++..++ |++..... +...
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef-----ecv~~lEGHE---nEVK~Vaws~s-G~~LATCS-----RDKS 128 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEF-----ECVATLEGHE---NEVKCVAWSAS-GNYLATCS-----RDKS 128 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecCCCce-----eEEeeeeccc---cceeEEEEcCC-CCEEEEee-----CCCe
Confidence 556899999999555557788887777665653 3233333222 35789999996 77555443 3456
Q ss_pred EEEEECCCC-cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEE--EEcCCCc--eEEEecCCCCCCcccccCc
Q 020019 126 VAAYDLSTW-NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIW--KVGVKGE--FLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 126 l~~~d~~~g-~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~--~v~~~g~--~~~~~~~~~~~~p~~~~~~ 200 (332)
+++|....+ +.....-|.... .-.-.++..|--.|.++.+..+.|- +..+++. ....++...
T Consensus 129 VWiWe~deddEfec~aVL~~Ht---qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~---------- 195 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHT---QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE---------- 195 (312)
T ss_pred EEEEEecCCCcEEEEeeecccc---ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc----------
Confidence 788776533 333332332111 1233588899767999998877654 4433332 222222111
Q ss_pred cccCeEEEccCc-eEEEEeCCCC--eEEE
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSG--NLFK 226 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~--~i~~ 226 (332)
...=.++|++.| +|--+ .+.+ +|||
T Consensus 196 ~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~ 223 (312)
T KOG0645|consen 196 NTVWSLAFDNIGSRLVSC-SDDGTVSIWR 223 (312)
T ss_pred ceEEEEEecCCCceEEEe-cCCcceEeee
Confidence 123478899988 55544 3333 4555
No 244
>PHA03098 kelch-like protein; Provisional
Probab=90.21 E-value=21 Score=35.46 Aligned_cols=152 Identities=13% Similarity=0.030 Sum_probs=76.1
Q ss_pred CCCEEEEE-ec-----CCeEEEEECCCCCCCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 55 SGRRFIVS-FL-----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 55 ~g~~~~~~-~~-----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
++.+|+.+ .. ...++++|+.+.++ ...|.+. ...-.++++- +++||+..+.........+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----------~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----------NKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee----------eECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEE
Confidence 34566654 21 13588898876553 2222222 1222344444 27899986532111234678
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC------CCeEEEEcCCCceEEEecCCCCCCcccccCcc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT------GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~------~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~ 201 (332)
+||+.+++.....+++. .+.+..++--+|++|+.-.. ...++++|+.... |...+.++.+ ..
T Consensus 362 ~yd~~~~~W~~~~~lp~-----~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~-----r~ 429 (534)
T PHA03098 362 SWKPGESKWREEPPLIF-----PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPIS-----HY 429 (534)
T ss_pred EEcCCCCceeeCCCcCc-----CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCcc-----cc
Confidence 89998776543333321 12122222235789986321 2568889886431 2111112111 11
Q ss_pred ccCeEEEccCceEEEEeCC--------CCeEEEEeCCCC
Q 020019 202 GLNGIVYHPDGFLIVIHTF--------SGNLFKIDIVDG 232 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~--------~~~i~~id~~~~ 232 (332)
+. ..+. -++.||+.-.. .+.++++|+.+.
T Consensus 430 ~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 430 GG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred Cc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 22 2232 35688886432 124888888865
No 245
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.12 E-value=12 Score=39.31 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=84.3
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCC-CCCCccce-------eeeEEecccCcCC--CccceEEEeCCCCeEEEEEeC
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPD-DYPPGTVL-------EEVTLVKDLELTG--NGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~-~~~~~~~~-------~~~~~~~~~~~~~--~~~~gi~vd~~~g~l~v~~~~ 117 (332)
..+-|.+||..+.+...+.-|.++.... +.. .+. ....|-..--+.+ .-...+..+|+ +.+.+...
T Consensus 73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~--~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s- 148 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSDDRLVMIWERAEIGSG--TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVS- 148 (942)
T ss_pred eEEEECCCCCeEeeccCcceEEEeeecccCCc--ccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEec-
Confidence 4567999998666656666555555431 000 000 0001110000000 13567888885 77666543
Q ss_pred cCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCC-Cc
Q 020019 118 VFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFT-PK 194 (332)
Q Consensus 118 ~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~-~p 194 (332)
-.+.+.+|+.++.+...... + ..+.+-|+++||-|..+.+.+....|...+.. |-... +.. .|. .|
T Consensus 149 ----~DnsViiwn~~tF~~~~vl~--~---H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~-It~-pf~~~~ 217 (942)
T KOG0973|consen 149 ----LDNSVIIWNAKTFELLKVLR--G---HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS-ITK-PFEESP 217 (942)
T ss_pred ----ccceEEEEccccceeeeeee--c---ccccccceEECCccCeeeeecCCceEEEEEcccceeeEe-ecc-chhhCC
Confidence 24678999999875443332 1 24678899999999888887777665444422 22111 111 111 11
Q ss_pred ccccCccccCeEEEccCc-eEEEEeCCCC
Q 020019 195 EWYKNLVGLNGIVYHPDG-FLIVIHTFSG 222 (332)
Q Consensus 195 ~~~~~~~~~nGi~~~~dG-~Lyva~~~~~ 222 (332)
.-..-.=+.|+||| +|-+.+.-++
T Consensus 218 ----~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 218 ----LTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred ----CcceeeecccCCCcCeecchhhccC
Confidence 11223456789999 7777666443
No 246
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.96 E-value=24 Score=35.77 Aligned_cols=193 Identities=9% Similarity=0.043 Sum_probs=95.2
Q ss_pred cccceEEcCCCCEEEEEe--------cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeC
Q 020019 46 FRECAKWDDSGRRFIVSF--------LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAAD 117 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~--------~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~ 117 (332)
.+..++++++|+...... ....||.++.. +.. . .+.... ....-.++++.+.||++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-----~--~lt~g~-----~~t~PsWspDG~~lw~v~dg 417 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-----V--QVLEGH-----SLTRPSWSLDADAVWVVVDG 417 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-----e--eeecCC-----CCCCceECCCCCceEEEecC
Confidence 566889999998653332 12368888753 321 1 222111 12233566754567776432
Q ss_pred cC------CCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEE---EcC-CCceEEEe
Q 020019 118 VF------GNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWK---VGV-KGEFLSII 186 (332)
Q Consensus 118 ~~------~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~---v~~-~g~~~~~~ 186 (332)
.. ..+.+.+++.+.+.++... .+ ......+.+.|||. +.+.- .++|+. +.. +|+ .++
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~--~~------~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l- 485 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVAS--RV------PGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YAL- 485 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhh--cc------CCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eee-
Confidence 00 0011233333333322211 11 13477899999994 54433 257766 443 454 222
Q ss_pred cCCCCCCcccccCccc-cCeEEEccCceEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEE
Q 020019 187 SSPLFTPKEWYKNLVG-LNGIVYHPDGFLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLV 264 (332)
Q Consensus 187 ~~~~~~~p~~~~~~~~-~nGi~~~~dG~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~ 264 (332)
..+.-. .+.... +..+.|..++.|++..... ..++++++++. ..+.+... ........++-.+ +.+|
T Consensus 486 ~~~~~l----~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~-----~~~~~~~~-n~~~~v~~vaa~~-~~iy 554 (591)
T PRK13616 486 TNPREV----GPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS-----NSDALPSR-NLSAPVVAVAASP-STVY 554 (591)
T ss_pred cccEEe----ecccCCccccceEecCCEEEEEecCCCCceEEEecCCc-----cccccCCC-CccCceEEEecCC-ceEE
Confidence 111000 011222 4678999999888876544 45899999854 12211111 0111222333333 6799
Q ss_pred EEeCCceEEE
Q 020019 265 VAGNPSARLV 274 (332)
Q Consensus 265 va~~~~~~~v 274 (332)
+++.......
T Consensus 555 v~~~~g~~~l 564 (591)
T PRK13616 555 VTDARAVLQL 564 (591)
T ss_pred EEcCCceEEe
Confidence 9987664433
No 247
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.66 E-value=5.4 Score=37.14 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=97.1
Q ss_pred cceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..+|=+|.. ..+++...+|.|..|+..+..+ ..++...-+ -+.||.++.. ..+++.+ + + .+
T Consensus 70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~------~~~f~AH~G----~V~Gi~v~~~-~~~tvgd-D----K--tv 131 (433)
T KOG0268|consen 70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQREC------IRTFKAHEG----LVRGICVTQT-SFFTVGD-D----K--TV 131 (433)
T ss_pred chhhcCcchhhhhhccccCceEEEEehhhhhh------hheeecccC----ceeeEEeccc-ceEEecC-C----c--ce
Confidence 345666654 3445556789999999876553 123332222 3689999973 4444443 2 2 23
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeE
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
..|..+ +.+...+. +.+...|+--...++++.|....=.||-...+. ...-... +......+
T Consensus 132 K~wk~~-~~p~~til------g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~-Pv~smsw----------G~Dti~sv 193 (433)
T KOG0268|consen 132 KQWKID-GPPLHTIL------GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN-PVSSMSW----------GADSISSV 193 (433)
T ss_pred eeeecc-CCcceeee------ccccccccccccccccccccCceeeecccccCC-ccceeec----------CCCceeEE
Confidence 344332 12222211 234455565555566777753333344333221 1111110 11123467
Q ss_pred EEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 207 VYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 207 ~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
-++|-. .+..+....+.|+-+|+...+ +++.+... -.+.+|+..|++-.|++.+.
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~----Pl~KVi~~----mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQAS----PLKKVILT----MRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCC----ccceeeee----ccccceecCccccceeeccc
Confidence 788887 677666677889999998663 45444432 35678888888777777543
No 248
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=89.56 E-value=15 Score=32.95 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=113.8
Q ss_pred cccceEEcCC-CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDS-GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~-g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..-.+++.|. |+++.+...+..|..++...+.. ..-++.+++ .+ +....++..|. |+ |++...+ .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~ck~vld~---~hkrsVRsvAwsp~-g~-~La~aSF----D 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTCKTVLDD---GHKRSVRSVAWSPH-GR-YLASASF----D 82 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCc----EEEEEeccc---cchheeeeeeecCC-Cc-EEEEeec----c
Confidence 4457899998 87777666677777777653221 111133321 12 46788999996 88 5554432 2
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEE--EcCCCceEE--EecCCCCCCcccccC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWK--VGVKGEFLS--IISSPLFTPKEWYKN 199 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~--v~~~g~~~~--~~~~~~~~~p~~~~~ 199 (332)
+.+.+|....++++....+.++. .-.-.+++.++|++..|.+....||. ++.++++.- ++....
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHE---nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht--------- 150 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHE---NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT--------- 150 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccc---cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc---------
Confidence 34566766667777766675542 34557999999999999998887655 555566542 222111
Q ss_pred ccccCeEEEccCceEEEEeCCCCeE--EEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe-EEEEe
Q 020019 200 LVGLNGIVYHPDGFLIVIHTFSGNL--FKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK-LVVAG 267 (332)
Q Consensus 200 ~~~~nGi~~~~dG~Lyva~~~~~~i--~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~-l~va~ 267 (332)
--.-++.++|-.-|.++-...++| |+.+.+.. - +-++. +.| .-...-.++|++.|. |.-+.
T Consensus 151 -qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd-W--~c~~t--l~g-~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 151 -QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD-W--ECVQT--LDG-HENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred -ccccEEEEcCCcceeEEeccCCeEEEEeecCCCC-e--eEEEE--ecC-ccceEEEEEecCCCceEEEec
Confidence 123589999987666666666666 55443211 0 01222 221 224667888888774 44443
No 249
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=89.31 E-value=33 Score=36.50 Aligned_cols=191 Identities=15% Similarity=0.121 Sum_probs=112.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKV 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v 176 (332)
.+..+.++..++.+|-.+.. ...+.............. ..+.-.+.++++|-- +++|.+|.....|.+.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~-----~~~i~~~~~~~~~~~~~~-----~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~ 507 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLS-----DEKICRASQDGSSECELC-----GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVA 507 (877)
T ss_pred cceEEEEEecCCEEEEEecc-----CCeEeeeccCCCccceEe-----ccCccccCcEEEEeccCCceecccCCceeEEE
Confidence 34455556555677777753 233433332222222111 123467889999986 5799999999998888
Q ss_pred cCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCC-CeEEEEeCCCCCCccceeEEEEecCCCCCCCCe
Q 020019 177 GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFS-GNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDG 254 (332)
Q Consensus 177 ~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~-~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdG 254 (332)
+.+|....++-.... ..+..++++|-. .+|+++++. .+|-|-.++.. ....+... ...-|.|
T Consensus 508 ~~~g~~~~vl~~~~l---------~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~-----~~~~l~~~--~~~~p~g 571 (877)
T KOG1215|consen 508 DLDGSSRKVLVSKDL---------DLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGS-----ERAVLVTN--GILWPNG 571 (877)
T ss_pred EccCCceeEEEecCC---------CCccceeeccccCeeEEecCCCCchhhhhcCCCC-----CceEEEeC--CccCCCc
Confidence 877654333222211 345689999986 999999974 45666666632 22222222 2467899
Q ss_pred EEEe-CCCeEEEEeCCce--EEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEEEecCcccc
Q 020019 255 LELL-SPTKLVVAGNPSA--RLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLNHMLGFGYP 318 (332)
Q Consensus 255 i~~~-~dG~l~va~~~~~--~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~~~~g~~~~ 318 (332)
+++| .+.++|-++.... .....-+| ....+.. ...+.-|-.++..++++|=..+....+.
T Consensus 572 lt~d~~~~~~yw~d~~~~~~i~~~~~~g-~~r~~~~---~~~~~~p~~~~~~~~~iyw~d~~~~~~~ 634 (877)
T KOG1215|consen 572 LTIDYETDRLYWADAKLDYTIESANMDG-QNRRVVD---SEDLPHPFGLSVFEDYIYWTDWSNRAIS 634 (877)
T ss_pred ceEEeecceeEEEcccCCcceeeeecCC-CceEEec---cccCCCceEEEEecceeEEeeccccceE
Confidence 9999 4578888875432 11233445 3332111 1234556677777888886655555433
No 250
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=89.12 E-value=12 Score=33.21 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=66.3
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC---CeE-EE
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG---SKI-WK 175 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~---~~I-~~ 175 (332)
..+++|.. | ||+.-......+.-.|.++|+.+-+.+..+... .......+++.+ .|.||+.++.+ ..| +.
T Consensus 125 iD~avDE~-G-LWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~k~~~~~aF~i--CGvLY~v~S~~~~~~~i~ya 198 (249)
T KOG3545|consen 125 IDLAVDEN-G-LWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LPKRSAGNAFMI--CGVLYVVHSYNCTHTQISYA 198 (249)
T ss_pred ccceeccc-c-eeEEecccccCCcEEeeccCHHHhheeeeeccc--cCCCCcCceEEE--eeeeEEEeccccCCceEEEE
Confidence 67899984 5 688765322112223467888766666655442 122355566665 58899998863 345 57
Q ss_pred EcCC-CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeC
Q 020019 176 VGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 176 v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~ 229 (332)
+|.. |+..+ ..-+ |.. .......|-+.|.. .||+-+ ++.+..+++
T Consensus 199 ydt~~~~~~~-~~ip-f~N-----~y~~~~~idYNP~D~~LY~wd--ng~~l~y~l 245 (249)
T KOG3545|consen 199 YDTTTGTQER-IDLP-FPN-----PYSYATMIDYNPRDRRLYAWD--NGHQLTYNL 245 (249)
T ss_pred EEcCCCceec-cccc-ccc-----hhhhhhccCCCcccceeeEec--CCcEEEEEe
Confidence 7776 44322 1111 221 23456789999955 999854 455555543
No 251
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=89.11 E-value=8.3 Score=35.98 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=83.7
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+..|.-.+| |..++.... ....+.+||+.+|+....... +.....=+-..|||..+++.+-.+ ++++=
T Consensus 197 pVtsmqwn~d-gt~l~tAS~----gsssi~iWdpdtg~~~pL~~~-----glgg~slLkwSPdgd~lfaAt~da-vfrlw 265 (445)
T KOG2139|consen 197 PVTSMQWNED-GTILVTASF----GSSSIMIWDPDTGQKIPLIPK-----GLGGFSLLKWSPDGDVLFAATCDA-VFRLW 265 (445)
T ss_pred eeeEEEEcCC-CCEEeeccc----CcceEEEEcCCCCCccccccc-----CCCceeeEEEcCCCCEEEEecccc-eeeee
Confidence 3456777775 666665432 245688999999876544322 122333478899998777655433 33322
Q ss_pred -CC--CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC--CCc-cceeEEEE----ec-
Q 020019 178 -VK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG--VGE-GEEIKLIR----VA- 245 (332)
Q Consensus 178 -~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~--~~~-~~~~~~v~----~~- 245 (332)
.. -...++. . +.....+-+++|+| .|.++-..+-+||++.-+.. ... .+.++.+. ++
T Consensus 266 ~e~q~wt~erw~---l--------gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 266 QENQSWTKERWI---L--------GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred hhcccceeccee---c--------cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 11 1111221 1 11245678999999 88889999999998765521 110 01111111 11
Q ss_pred -----CCC--CCCCCeEEEeCCCeEEEE
Q 020019 246 -----GGP--LSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 246 -----g~~--~~~pdGi~~~~dG~l~va 266 (332)
|+. .+.+.-|+.||-|+-.+.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEE
Confidence 122 246889999998875444
No 252
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=89.08 E-value=16 Score=34.67 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=58.5
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEE--CCCC-cEEEEeCCCCeEEEEcCCC----ceEEEecCCCCCCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTV--DAEG-NAYVTDVTGSKIWKVGVKG----EFLSIISSPLFTPKEW 196 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiav--d~dG-~lyvtd~~~~~I~~v~~~g----~~~~~~~~~~~~~p~~ 196 (332)
..+.+|...+++..+.+.+... ...|--+.+ +|+- .-|+....+..|+++-... ...+++..+......+
T Consensus 229 ~~lhvy~w~~~~~~QtidL~~~---gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w 305 (476)
T KOG0918|consen 229 SHLHVYQWSPGELKQTIDLGDT---GLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENW 305 (476)
T ss_pred eeeEEEecCCccceeEEecCCC---CcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccc
Confidence 3567788888888887777421 233333333 2332 3566555555555544321 1222222221111110
Q ss_pred -ccCcc-ccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 197 -YKNLV-GLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 197 -~~~~~-~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.+.+. -...|-++=|. .||++++..|-|+++|.+++
T Consensus 306 ~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 306 ILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred cCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 11111 24566677666 99999999999999999876
No 253
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.02 E-value=29 Score=35.53 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=107.6
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
.+.|.+.+...-..++.++.+..+. .+-.++.|-.|+.++.++ .+++.. +-..+-.+=|- ++ ||.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~-~Sga~~SikiWn~~t~kc------iRTi~~------~y~l~~~Fvpg-d~-~Iv 428 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILL-ASGAGESIKIWNRDTLKC------IRTITC------GYILASKFVPG-DR-YIV 428 (888)
T ss_pred cceeeeccchhheeEEEeecCceee-eecCCCcEEEEEccCcce------eEEecc------ccEEEEEecCC-Cc-eEE
Confidence 3456666655556678888775444 444457787787766653 123321 13344455552 44 555
Q ss_pred EeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC------CCceEEE---
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV------KGEFLSI--- 185 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~------~g~~~~~--- 185 (332)
.+. +.+.|.+||..+....-.++- .+ .-.-.++..|||.=++|-+....|--.+- .|....+
T Consensus 429 ~G~----k~Gel~vfdlaS~~l~Eti~A---Hd--gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 429 LGT----KNGELQVFDLASASLVETIRA---HD--GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred Eec----cCCceEEEEeehhhhhhhhhc---cc--cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 432 467899999987655433321 11 22334777888877777776655433221 1222111
Q ss_pred ecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEE
Q 020019 186 ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVV 265 (332)
Q Consensus 186 ~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~v 265 (332)
.....+.-+ ...-.+.++|||.+...--.++++-.+-+++- ...+.+.|..++. -.|.+.+|.++.+
T Consensus 500 ~~~rtLel~------ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------KFflsLYGHkLPV-~smDIS~DSkliv 566 (888)
T KOG0306|consen 500 KHTRTLELE------DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------KFFLSLYGHKLPV-LSMDISPDSKLIV 566 (888)
T ss_pred ccceEEecc------ccEEEEEEcCCCcEEEEEeccCeEEEEEecce------eeeeeecccccce-eEEeccCCcCeEE
Confidence 111111111 12347889999944444455666666666653 2334555544543 3577778899999
Q ss_pred EeC
Q 020019 266 AGN 268 (332)
Q Consensus 266 a~~ 268 (332)
+..
T Consensus 567 TgS 569 (888)
T KOG0306|consen 567 TGS 569 (888)
T ss_pred ecc
Confidence 864
No 254
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=88.58 E-value=22 Score=33.59 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=102.6
Q ss_pred ceEEcCCCCEEEEE-ecCCeEEEEEC-CCCCCCccceeeeEEecccCcCC--CccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 49 CAKWDDSGRRFIVS-FLDGGIGQVAV-PDDYPPGTVLEEVTLVKDLELTG--NGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 49 gia~d~~g~~~~~~-~~~g~I~~vd~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
.++|.|-.+-.+.+ ..+.+|..|+. +++... ...+.+. .+.| +.+.-++.+|...++..+.. ..+
T Consensus 86 Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~ltepvv-----~L~gH~rrVg~V~wHPtA~NVLlsag-----~Dn 154 (472)
T KOG0303|consen 86 DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-DLTEPVV-----ELYGHQRRVGLVQWHPTAPNVLLSAG-----SDN 154 (472)
T ss_pred ccccCccCCceeecCCCCceEEEEECCCccccc-CcccceE-----EEeecceeEEEEeecccchhhHhhcc-----CCc
Confidence 46778876666665 55666666663 333210 0011000 1111 23445666665344444332 246
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCcccc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.+..|+..+|+....... | -....+.+..||.+++|......|..+|+. |+...-.... ....+
T Consensus 155 ~v~iWnv~tgeali~l~h--p----d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h---------eG~k~ 219 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDH--P----DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH---------EGAKP 219 (472)
T ss_pred eEEEEeccCCceeeecCC--C----CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc---------cCCCc
Confidence 788999999886543332 2 234558888999999999999999999987 4543221111 11223
Q ss_pred CeEEEccCceEEEEeCC---CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE---eCC-CeEEEEeC--CceEEE
Q 020019 204 NGIVYHPDGFLIVIHTF---SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL---LSP-TKLVVAGN--PSARLV 274 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~---~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~---~~d-G~l~va~~--~~~~~v 274 (332)
.-..|-.+|.++.+-+. ..++.-.+++.-. +++.. +.+....|+.+ |+| +-+|+++- .++|+.
T Consensus 220 ~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~---eP~~~-----~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 220 ARAIFLASGKIFTTGFSRMSERQIALWDPNNLE---EPIAL-----QELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ceeEEeccCceeeeccccccccceeccCccccc---Cccee-----EEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 34456667765554442 2233333333210 11111 12334456665 677 56888863 345655
Q ss_pred Ec
Q 020019 275 ES 276 (332)
Q Consensus 275 ~~ 276 (332)
..
T Consensus 292 Ei 293 (472)
T KOG0303|consen 292 EI 293 (472)
T ss_pred Ee
Confidence 43
No 255
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=88.55 E-value=12 Score=32.87 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEcCC--CceE-----EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCC
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVGVK--GEFL-----SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSG 222 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~~~--g~~~-----~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~ 222 (332)
.....|+..|+|.+|.... +.+|+..+. +... ..+... ....-.-|.+++.|.||.... ++
T Consensus 34 ~~~~~i~~~P~g~lY~I~~--~~lY~~~~~~~~~~~~~~~~~~Ig~g---------~W~~F~~i~~d~~G~LYaV~~-~G 101 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIRN--DGLYRGSPSSSGGNTWDSGSKQIGDG---------GWNSFKFIFFDPTGVLYAVTP-DG 101 (229)
T ss_dssp TT-SEEEE-TTS-EEEEET--TEEEEES---STT--HHHH-EEEE-S----------GGG-SEEEE-TTS-EEEEET-T-
T ss_pred cccceEEEcCCceEEEEEC--CceEEecCCccCcccccccCcccccC---------cccceeEEEecCCccEEEecc-cc
Confidence 4466799999999999874 488888422 1111 111111 012234899999999997665 78
Q ss_pred eEEEEeCCCCCCc---cceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 223 NLFKIDIVDGVGE---GEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 223 ~i~~id~~~~~~~---~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
+|||....+.... ....+.+-. ..-+..+-+-.+++|.||+.+...
T Consensus 102 ~lyR~~~~~~~~~~W~~~~~~~iG~--~GW~~f~~vfa~~~GvLY~i~~dg 150 (229)
T PF14517_consen 102 KLYRHPRPTNGSDNWIGGSGKKIGG--TGWNDFDAVFAGPNGVLYAITPDG 150 (229)
T ss_dssp EEEEES---STT--HHH-HSEEEE---SSGGGEEEEEE-TTS-EEEEETTE
T ss_pred ceeeccCCCccCcchhhccceeccc--CCCccceEEEeCCCccEEEEcCCC
Confidence 8999887643211 001222311 123445677778889999888654
No 256
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=88.49 E-value=35 Score=36.33 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=112.0
Q ss_pred cceEEcCCCCEE-EEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 48 ECAKWDDSGRRF-IVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 48 egia~d~~g~~~-~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..+.++...+.. ..+.....|.+....+... . .+.. -+. ..+.|+++|--.+.+|..+.. ...+
T Consensus 440 ~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~-----~--~~~~-~g~--~~~~~lavD~~~~~~y~tDe~-----~~~i 504 (877)
T KOG1215|consen 440 VALDFDVLNNRIYWADLSDEKICRASQDGSSE-----C--ELCG-DGL--CIPEGLAVDWIGDNIYWTDEG-----NCLI 504 (877)
T ss_pred eEEEEEecCCEEEEEeccCCeEeeeccCCCcc-----c--eEec-cCc--cccCcEEEEeccCCceecccC-----Ccee
Confidence 334444444433 3446677788877654431 1 2221 111 257899999877888888764 2334
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC-CCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT-GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~-~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.+.+++ |... ...+. .....|..++++|- |-+|.+|++ ..+|-|-..+|.....+... +...|+
T Consensus 505 ~v~~~~-g~~~-~vl~~---~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~---------~~~~p~ 570 (877)
T KOG1215|consen 505 EVADLD-GSSR-KVLVS---KDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN---------GILWPN 570 (877)
T ss_pred EEEEcc-CCce-eEEEe---cCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC---------CccCCC
Confidence 455543 2221 11111 11246777999997 779999998 45687877887644433221 235689
Q ss_pred eEEEccCc-eEEEEeCCCC-eEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 205 GIVYHPDG-FLIVIHTFSG-NLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~-~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
|++++--. .+|+++.... .|.+++.+.. ..+ +... ..+..|.++++-.+ .+|-++
T Consensus 571 glt~d~~~~~~yw~d~~~~~~i~~~~~~g~-----~r~-~~~~-~~~~~p~~~~~~~~-~iyw~d 627 (877)
T KOG1215|consen 571 GLTIDYETDRLYWADAKLDYTIESANMDGQ-----NRR-VVDS-EDLPHPFGLSVFED-YIYWTD 627 (877)
T ss_pred cceEEeecceeEEEcccCCcceeeeecCCC-----ceE-Eecc-ccCCCceEEEEecc-eeEEee
Confidence 99999776 9999999888 6888888754 222 2222 34567889988765 566554
No 257
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=88.10 E-value=25 Score=33.54 Aligned_cols=166 Identities=9% Similarity=0.035 Sum_probs=97.8
Q ss_pred ccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 47 RECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 47 pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-.|+.|.+.-.-.+.+ ..+++|..+|.........+...+.....- ...+..+++++-+..||.+..+ .++
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h---~~~VeDV~~h~~h~~lF~sv~d-----d~~ 251 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH---EDVVEDVAWHPLHEDLFGSVGD-----DGK 251 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecC---CcceehhhccccchhhheeecC-----CCe
Confidence 3567887775544444 556677666654332100000111222110 0245677777765677877765 468
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
|..||.++++........ + -..-.|.+++.|-+ .|+.|-+..+.|.-+|...-...+. .++. ......
T Consensus 252 L~iwD~R~~~~~~~~~~~--a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~-----H~dev~ 320 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVK--A-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEG-----HEDEVF 320 (422)
T ss_pred EEEEEcCCCCCCCccccc--c-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccC-----CCcceE
Confidence 999999864221111111 1 12456889999974 6888888889998888753222211 1111 112356
Q ss_pred eEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 205 GIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 205 Gi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
.+.|+|+- ++..+....+++...|+..
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccc
Confidence 89999998 8888888888888888773
No 258
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.01 E-value=33 Score=34.84 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=122.3
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-.+.+++-|||.-++... +.+++.+|+..|.. .+ ++-.+- .-++.++...+ |..|.+... ..-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l----lq--tLKgHK----DtVycVAys~d-GkrFASG~a-----DK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL----LQ--PLKGHK----DTVYCVAYAKD-GKRFASGSA-----DKS 76 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc----cc--cccccc----ceEEEEEEccC-CceeccCCC-----cee
Confidence 347899999998776553 57899999887752 12 221111 25678888875 887766432 112
Q ss_pred EEEEECC---------------------CCcEEE----EEecCCCCC-------CCCCccceEECCCCcEEEEeCCCCeE
Q 020019 126 VAAYDLS---------------------TWNRLF----LTQLSGPSD-------GKSCADDVTVDAEGNAYVTDVTGSKI 173 (332)
Q Consensus 126 l~~~d~~---------------------~g~~~~----~~~l~~~~~-------~~~~~ndiavd~dG~lyvtd~~~~~I 173 (332)
+.+|..+ +..+.. .+.+-++.+ -..+.++.+...||.+++---.+|.|
T Consensus 77 VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 77 VIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred EEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceE
Confidence 3333332 111100 011111111 12578889999999877777778888
Q ss_pred EEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc------eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCC
Q 020019 174 WKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG------FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGG 247 (332)
Q Consensus 174 ~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG------~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~ 247 (332)
..-+..|+....+..+... ....-+|+++|.. .+-|.|++. ++.-..++ |+ .+. -. .
T Consensus 157 siRNk~gEek~~I~Rpgg~-------Nspiwsi~~~p~sg~G~~di~aV~DW~q-TLSFy~Ls-G~----~Ig---k~-r 219 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGS-------NSPIWSICWNPSSGEGRNDILAVADWGQ-TLSFYQLS-GK----QIG---KD-R 219 (1081)
T ss_pred EeecCCCCcceEEeCCCCC-------CCCceEEEecCCCCCCccceEEEEeccc-eeEEEEec-ce----eec---cc-c
Confidence 8777777765555443332 1123478887652 455555532 33333333 21 111 01 1
Q ss_pred CC-CCCCeEEEeCCCeEEEEe-CCceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEE
Q 020019 248 PL-SFGDGLELLSPTKLVVAG-NPSARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 248 ~~-~~pdGi~~~~dG~l~va~-~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv 309 (332)
.+ ..|-.+..=++|.....+ ....-.+++.+|-+.+++-. .-.|..+++. .++.-|+
T Consensus 220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~-----~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE-----QDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred cCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc-----cceeEEEEEEccCCceEE
Confidence 22 246677777888865554 33334467888855554433 1235566776 5555554
No 259
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.64 E-value=27 Score=33.52 Aligned_cols=222 Identities=13% Similarity=0.180 Sum_probs=115.9
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
.+++++||+.++++-.+..|+.++.++.+. .. .+...- +.+.++++-.....||.+..+ ..+.+
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~eh----v~--~~~ghr----~~V~~L~fr~gt~~lys~s~D------rsvkv 270 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEH----VK--VFKGHR----GAVSSLAFRKGTSELYSASAD------RSVKV 270 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccch----hh--cccccc----cceeeeeeecCccceeeeecC------CceEE
Confidence 478999998766665567788999887762 11 121100 246778876656889999875 24667
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEE-EEeC-CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAY-VTDV-TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~ly-vtd~-~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
|+.+.... .-.+-+.. ...-+|-.-..++.. |... ..-++|++..+.+ +.+.... ..+..+
T Consensus 271 w~~~~~s~--vetlyGHq---d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~-----------~sidcv 333 (479)
T KOG0299|consen 271 WSIDQLSY--VETLYGHQ---DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGE-----------GSIDCV 333 (479)
T ss_pred EehhHhHH--HHHHhCCc---cceeeechhcccceEEeccccceeEEEeccccce-eeeeCCC-----------CCeeeE
Confidence 77653221 11121111 111122222223322 2211 2457888833333 3332221 235677
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-C-----CCCC---CCCeEEEeCCCeEEEEeCC--ceEEEE
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-G-----GPLS---FGDGLELLSPTKLVVAGNP--SARLVE 275 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g-----~~~~---~pdGi~~~~dG~l~va~~~--~~~~v~ 275 (332)
++=.+ .=||+-..+|.|+-+++.+.+ ++...... | .+.. =-.++++-+.-.|+.++.. ..++--
T Consensus 334 ~~In~-~HfvsGSdnG~IaLWs~~KKk----plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 334 AFIND-EHFVSGSDNGSIALWSLLKKK----PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred EEecc-cceeeccCCceEEEeeecccC----ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 87644 456667788888888777542 33333322 1 0011 1235677777677777632 223223
Q ss_pred cCCCceEEEEEeeecCCCcccceEEEE-E-CCeEEEE
Q 020019 276 SSDGWETAAVVAKFSGPVHRLATAATV-K-DGRVYLN 310 (332)
Q Consensus 276 ~~dg~~~~~~~~~~~~~~~~~pt~va~-~-~g~lyv~ 310 (332)
..+|.+...++..++. ..+...++| . +.+|++.
T Consensus 409 i~~g~r~i~~l~~ls~--~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 409 IEDGLRAINLLYSLSL--VGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ecCCccccceeeeccc--ccEEEEEEEccCCCEEEEe
Confidence 4566455555555442 234567777 4 4446663
No 260
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.51 E-value=35 Score=34.63 Aligned_cols=164 Identities=20% Similarity=0.170 Sum_probs=94.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
+.+.+++.||.-.|.++.. +++++||++.|..... +.+. .-..+.+|...||..|.+-.....|...+
T Consensus 14 ci~d~afkPDGsqL~lAAg-------~rlliyD~ndG~llqt--LKgH---KDtVycVAys~dGkrFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-------SRLLVYDTSDGTLLQP--LKGH---KDTVYCVAYAKDGKRFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEecC-------CEEEEEeCCCcccccc--cccc---cceEEEEEEccCCceeccCCCceeEEEec
Confidence 6789999998334555432 5799999998876543 3211 24567799999999988877666666666
Q ss_pred CC--CceEEEecC--------------------CCCC--Ccc-----cccCccccCeEEEccCceEEEEeCCCCeEEEEe
Q 020019 178 VK--GEFLSIISS--------------------PLFT--PKE-----WYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 178 ~~--g~~~~~~~~--------------------~~~~--~p~-----~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
+. |.. .+... ..|. .+. ....-...++.+|..||+.++--..+|+|. +.
T Consensus 82 ~klEG~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIs-iR 159 (1081)
T KOG1538|consen 82 SKLEGIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTIS-IR 159 (1081)
T ss_pred cccccee-eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEE-ee
Confidence 54 322 11100 0010 011 012234678999999996555566788874 22
Q ss_pred CCCCCCccceeEEEEecCCCCCCCCeEEEeCC------CeEEEEeCCceEEEEcCCC
Q 020019 229 IVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP------TKLVVAGNPSARLVESSDG 279 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d------G~l~va~~~~~~~v~~~dg 279 (332)
-.++ ++...+.-+|.+-+...++++.|. ..+-|++++..-....-+|
T Consensus 160 Nk~g----Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 160 NKNG----EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred cCCC----CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 2223 233445555434445567777643 3366666554333344555
No 261
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=87.07 E-value=28 Score=32.99 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=60.3
Q ss_pred CccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 44 SFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 44 ~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
..-+..++|.++++...+..-+..++-+|...+.. . ....+ -...++|++.||- +. ||+..... +
T Consensus 123 ~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-----~--~~~~d---h~~yvqgvawDpl-~q-yv~s~s~d--r- 187 (434)
T KOG1009|consen 123 RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-----L--AILDD---HEHYVQGVAWDPL-NQ-YVASKSSD--R- 187 (434)
T ss_pred ccchhhhhccCCCceeeeeeccceEEEEEecccee-----E--eeccc---cccccceeecchh-hh-hhhhhccC--c-
Confidence 34566799999998777665567778887766652 1 12211 1135889999985 44 66654311 1
Q ss_pred ceEEEEECCCCcEEEEE------------------ecCCCCCCCCCccceEECCCCcEEEEeC
Q 020019 124 SAVAAYDLSTWNRLFLT------------------QLSGPSDGKSCADDVTVDAEGNAYVTDV 168 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~------------------~l~~~~~~~~~~ndiavd~dG~lyvtd~ 168 (332)
....+..+..++.... .+-.-.....|..-+.+.|||.+|++-.
T Consensus 188 -~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 188 -HPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred -ccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 1222222221111111 1100011246778889999999999754
No 262
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.00 E-value=24 Score=32.24 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=94.3
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc-EEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN-RLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKV 176 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v 176 (332)
...+++.+ ..+|+++. .+.|.++|..+-+ +...-.++ . -....++.+. |+ +||+|...+-+ .+
T Consensus 89 ~~Dv~vse--~yvyvad~------ssGL~IvDIS~P~sP~~~~~ln--t--~gyaygv~vs--Gn~aYVadlddgfL-iv 153 (370)
T COG5276 89 FADVRVSE--EYVYVADW------SSGLRIVDISTPDSPTLIGFLN--T--DGYAYGVYVS--GNYAYVADLDDGFL-IV 153 (370)
T ss_pred hheeEecc--cEEEEEcC------CCceEEEeccCCCCcceecccc--C--CceEEEEEec--CCEEEEeeccCcEE-EE
Confidence 45677775 68899985 3568888876532 22111121 1 1344456554 54 89999866543 33
Q ss_pred cCC--CceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 177 GVK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 177 ~~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
|.. .+.... . ++.-|. .-..-++++ | +-|++..+.| +..+|...+.. ...+...... ++..
T Consensus 154 dvsdpssP~la-g--rya~~~-----~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~s-Pvli~~~n~g----~g~~ 217 (370)
T COG5276 154 DVSDPSSPQLA-G--RYALPG-----GDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHS-PVLIGSYNTG----PGTY 217 (370)
T ss_pred ECCCCCCceee-e--eeccCC-----CCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCC-CeEEEEEecC----CceE
Confidence 322 222211 0 111110 112356776 6 9999998877 55677775521 0123333332 2334
Q ss_pred eEEEeCCCeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEEECCeEEEE
Q 020019 254 GLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATVKDGRVYLN 310 (332)
Q Consensus 254 Gi~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~~~g~lyv~ 310 (332)
++.+ .+++.|++......++...++.+.-++....+......-+++.+.+.+.||.
T Consensus 218 sv~v-sdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yva 273 (370)
T COG5276 218 SVSV-SDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVA 273 (370)
T ss_pred EEEe-cCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeee
Confidence 4544 4578888875544444445553444455443322112223456688999983
No 263
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=86.97 E-value=41 Score=34.82 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=97.7
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
..++++.++...++..+|+|..+..-.-.-...-.....|.. +.++++.+..+ |. |+..++ ..+.+.+
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~------~~V~~L~fS~~-G~-~LlSGG----~E~VLv~ 277 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH------DEVNSLSFSSD-GA-YLLSGG----REGVLVL 277 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc------cccceeEEecC-Cc-eEeecc----cceEEEE
Confidence 467888888665666679998887432010000011112321 25678898886 65 444433 3467888
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC-CCceEEEecCCCCCCcc-cccCccccCeE
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV-KGEFLSIISSPLFTPKE-WYKNLVGLNGI 206 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~-~g~~~~~~~~~~~~~p~-~~~~~~~~nGi 206 (332)
|..++++....-++. +-.-++++.||+++|-.--..++|..+.. +-+....+.......|. ......-+.++
T Consensus 278 Wq~~T~~kqfLPRLg------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 278 WQLETGKKQFLPRLG------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EeecCCCcccccccC------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 999888744433442 34567999999999988777888887765 32222222111111010 01123457899
Q ss_pred EEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
+++|.=...+-+...++|.-+|+.+.
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred EEcCCCCceeecCCCceEEEEecccc
Confidence 99994344444677788888888754
No 264
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=86.94 E-value=35 Score=33.97 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=66.6
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE--EE-ecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL--SI-ISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~--~~-~~~~~~~~p~~~~~~ 200 (332)
..|++++++.|..+.-+... .+..|-+.+.+-+.|+.+-+..|.|--+|+.-+-. .+ +....-..|. ....
T Consensus 155 ~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg-~~~~ 228 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG-GDAA 228 (703)
T ss_pred cceEEEEccccccccccccc-----cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc-cccc
Confidence 35888888888776544432 24567788888777888888889999999874421 11 1111100111 1123
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
..+..|.|+.|| ++-|. +.+|.++-+|+.+.
T Consensus 229 ~svTal~F~d~gL~~aVG-ts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVG-TSTGSVLIYDLRAS 260 (703)
T ss_pred CcceEEEecCCceeEEee-ccCCcEEEEEcccC
Confidence 457899999889 77776 45788999999865
No 265
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.39 E-value=30 Score=32.65 Aligned_cols=130 Identities=13% Similarity=0.182 Sum_probs=79.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCCC--C---CCCccceEECCC--CcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSD--G---KSCADDVTVDAE--GNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKE 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~--~---~~~~ndiavd~d--G~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~ 195 (332)
.+.+-.||++..+.++...-. |.+ + ..-+.|+.+-+. .+-++|-+..+++..+|+.-+-..+..-...+
T Consensus 172 ~n~lkiwdle~~~qiw~aKNv-pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E--- 247 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNV-PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE--- 247 (412)
T ss_pred ccceeeeecccceeeeeccCC-CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc---
Confidence 356778999876544432211 111 0 123567777766 67899999999999999873212221111111
Q ss_pred cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeC
Q 020019 196 WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~ 268 (332)
.....+.+.|+| .+|++++ .+.+..||..+++ .--....| -.+.+.+|.+.+.+.+..+..
T Consensus 248 -----~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~k-----l~g~~~kg-~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 248 -----NPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGK-----LLGCGLKG-ITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred -----CcceeeeecCCCcEEEEecc-cchhheecccCce-----eeccccCC-ccCCcceEEEcCCCceEEeec
Confidence 124567888999 8888886 5679999999763 21122222 225788999998776666653
No 266
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=86.36 E-value=11 Score=37.76 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+..-.-.++||+++|+..-+...+|+|.+..+..++. .+.+.++-.+....-|...-+ |++.++.+ +.
T Consensus 716 l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--------pv~Eg~gpvgtRgARi~wacd-gr~viv~G-fd 785 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--------PVYEGKGPVGTRGARILWACD-GRIVIVVG-FD 785 (1012)
T ss_pred eccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--------ccccCCCCccCcceeEEEEec-CcEEEEec-cc
Confidence 444444667899999999887777889999999876652 233222211111122344443 55444432 22
Q ss_pred CCccceEEEEECCCCc--EEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccc
Q 020019 120 GNKYSAVAAYDLSTWN--RLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEW 196 (332)
Q Consensus 120 ~~~~~~l~~~d~~~g~--~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~ 196 (332)
+...-.+..||.++-. .+....+.- ...+-=--.|+|- -+++|-.+...|+.+..--+-..++.-..|+.|
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDv----aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp-- 859 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDV----APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSP-- 859 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecc----cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCC--
Confidence 1112245566654322 111111210 0111112347774 478887777777776432111112222233322
Q ss_pred ccCccccCeEEEccCc
Q 020019 197 YKNLVGLNGIVYHPDG 212 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG 212 (332)
.+-.||+|.++-
T Consensus 860 ----~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 860 ----VGHQGLAFLQKL 871 (1012)
T ss_pred ----Ccccceeeeccc
Confidence 345788888765
No 267
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.19 E-value=9.2 Score=40.16 Aligned_cols=119 Identities=16% Similarity=0.086 Sum_probs=72.3
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEe
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
.--.|++.+|++.+.++-+..+.|..++.. .+....+.. ...-+-|+.|||-|.-+.++.+.+.|..++
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~----------H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG----------HQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeeec----------ccccccceEECCccCeeeeecCCceEEEEE
Confidence 346689999999999999999999998865 232322222 123356999999998888888888775555
Q ss_pred CCCCCCccceeEEEEecCCCC---CCCCeEEEeCCCeEEEEeC---C--ceEEEEcCCCceE
Q 020019 229 IVDGVGEGEEIKLIRVAGGPL---SFGDGLELLSPTKLVVAGN---P--SARLVESSDGWET 282 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~~~g~~~---~~pdGi~~~~dG~l~va~~---~--~~~~v~~~dg~~~ 282 (332)
..+= ...+.+.-+-+.. ..---+...|||..+++-| . ...-++..++|+.
T Consensus 200 t~dw----~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~ 257 (942)
T KOG0973|consen 200 TSDW----GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV 257 (942)
T ss_pred cccc----eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee
Confidence 3331 1333343221111 1122344569999888842 2 1233455677764
No 268
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.47 E-value=47 Score=34.09 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=83.8
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCCCCeEEEEcC
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I~~v~~ 178 (332)
+.|....+ +.|.-+.+| + .+..|++...+=+..+.- ..+...+++.|- .+.|++-+..+.|...+.
T Consensus 373 LDlSWSKn-~fLLSSSMD----K--TVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 373 LDLSWSKN-NFLLSSSMD----K--TVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred eecccccC-CeeEecccc----c--cEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeecccccceEEeec
Confidence 34455543 555555554 2 244567665443333332 357788999995 579999888887666664
Q ss_pred CCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec-CCC--CCCCCeE
Q 020019 179 KGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA-GGP--LSFGDGL 255 (332)
Q Consensus 179 ~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~-g~~--~~~pdGi 255 (332)
-.+....+.+-. .-...+||.|||...|.-+.+|...-++..+.+.. .-..|... ++. .....|+
T Consensus 440 ~d~~Vv~W~Dl~----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~--~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 440 SDKKVVDWNDLR----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV--SDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred CcCeeEeehhhh----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEE--EeeeEeeccCccccCceeeee
Confidence 434333333211 12468999999944444455666666666654321 11112221 111 1246778
Q ss_pred EEeCC--CeEEEEeCCc-eEEEEc
Q 020019 256 ELLSP--TKLVVAGNPS-ARLVES 276 (332)
Q Consensus 256 ~~~~d--G~l~va~~~~-~~~v~~ 276 (332)
.+.+. .++.|+.|.+ +|++..
T Consensus 508 Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred EecCCCCCeEEEecCCCceEEEec
Confidence 77643 3688887654 454443
No 269
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.22 E-value=27 Score=31.10 Aligned_cols=163 Identities=14% Similarity=0.133 Sum_probs=85.7
Q ss_pred cccceEEcCCCCEEEEEe---cCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVSF---LDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~---~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
.++.++++++|+.+..-. ...+|+....++.. . .+.. +.....-.++++ +.+|++..+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~------~--~~~~-----g~~l~~PS~d~~-g~~W~v~~~~~--- 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV------R--PVLT-----GGSLTRPSWDPD-GWVWTVDDGSG--- 87 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc------e--eecc-----CCccccccccCC-CCEEEEEcCCC---
Confidence 678899999998664432 34568888655332 1 2221 113334477886 99999976421
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-c-EEEE-eCCCCeEEE--E--cCCCceEEEecCCCCCCcc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-N-AYVT-DVTGSKIWK--V--GVKGEFLSIISSPLFTPKE 195 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~-lyvt-d~~~~~I~~--v--~~~g~~~~~~~~~~~~~p~ 195 (332)
...+. .+..+++... ..+..+.. ......+.+.||| + .++. +...++|+. + +.+|....+ ..+.-..+
T Consensus 88 ~~~~~-~~~~~g~~~~-~~v~~~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l-~~~~~~~~- 162 (253)
T PF10647_consen 88 GVRVV-RDSASGTGEP-VEVDWPGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL-TGPRRVAP- 162 (253)
T ss_pred ceEEE-EecCCCccee-EEeccccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee-ccceEecc-
Confidence 12222 2333444322 22221211 1156789999999 4 4444 344566665 2 233411111 11110000
Q ss_pred cccCccccCeEEEccCceEEEEeCCC-CeEEE-EeCCCC
Q 020019 196 WYKNLVGLNGIVYHPDGFLIVIHTFS-GNLFK-IDIVDG 232 (332)
Q Consensus 196 ~~~~~~~~nGi~~~~dG~Lyva~~~~-~~i~~-id~~~~ 232 (332)
........++|.++++|.|..... ..++. +..+.+
T Consensus 163 --~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 163 --PLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred --cccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 123456799999999776666544 34665 655543
No 270
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.03 E-value=16 Score=34.34 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=74.9
Q ss_pred cccceEEcCC--CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDS--GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~--g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
++.++.|-+. .+.|++....+++..+|+..+..| +...+ +..+....+...++.+.+|+++. .
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--------V~~fd-~~E~~is~~~l~p~gn~Iy~gn~------~ 268 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--------VAQFD-FLENPISSTGLTPSGNFIYTGNT------K 268 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcc--------eeEec-cccCcceeeeecCCCcEEEEecc------c
Confidence 5566666665 556666666789999998755432 22111 11124456777887566777764 5
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG 180 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g 180 (332)
+.|..||.+.++.... .+. ...+.+.+|..+|.+.+..+....--|..+|.+.
T Consensus 269 g~l~~FD~r~~kl~g~-~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLLGC-GLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred chhheecccCceeecc-ccC---CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 6799999998776432 221 1236788899999987777766666666677664
No 271
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.84 E-value=32 Score=31.62 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=57.4
Q ss_pred CCCEEEEE-ec----CCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 55 SGRRFIVS-FL----DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 55 ~g~~~~~~-~~----~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
++.+|+.. .. ...++++++.+.++ + ..|...+.++. ..-.+.++- +++|||..........+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w-----~-~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKE-----E-LICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCce-----e-eeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEE
Confidence 45677654 22 14688888765542 0 01222222221 112334444 279999854321122457899
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC----CeEEEEcCCC
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG----SKIWKVGVKG 180 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~----~~I~~v~~~g 180 (332)
||+++.+......++ . ..+....++--++.||+---.. ..++++|+..
T Consensus 144 yd~~~~~W~~~~~~p--~--~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 144 FNLETQEWFELPDFP--G--EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EcCCCCCeeECCCCC--C--CCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 999877654332232 1 1222333333456799863221 2467888764
No 272
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=84.83 E-value=43 Score=33.09 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=98.5
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC--CccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG--NGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-++++...+...|+.-.+|.|.-|...-..-+.+-.+. ..+... +.| ...++++++..+.+|..|+.+ +.
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp-~vl~~~-l~Ghtdavw~l~~s~~~~~Llscs~D------gT 419 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP-SVLSGT-LLGHTDAVWLLALSSTKDRLLSCSSD------GT 419 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc-chhccc-eeccccceeeeeecccccceeeecCC------ce
Confidence 35678888888887766888877732211100000000 111110 111 257899999887888888764 45
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcC-C-CceEEEecCCCCCCcccccCccc
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGV-K-GEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~-~-g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
+..|++..... ..+..+. ....|.-+.+-..- .+-+++. .-..+.++. + +....++.+...+.+. ....
T Consensus 420 vr~w~~~~~~~---~~f~~~~-e~g~Plsvd~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~---~~~~ 491 (577)
T KOG0642|consen 420 VRLWEPTEESP---CTFGEPK-EHGYPLSVDRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPR---RYPQ 491 (577)
T ss_pred EEeeccCCcCc---cccCCcc-ccCCcceEeeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCccc---ccCc
Confidence 77787754333 2222221 23455444443322 1222221 122222221 1 2222333332222111 1234
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
.|=|+..|.+-+-++...++.|..+|-.++. .+.... +.....++++++++|-.+++.+..
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~----~l~s~~---a~~~svtslai~~ng~~l~s~s~d 552 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGK----ILHSMV---AHKDSVTSLAIDPNGPYLMSGSHD 552 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccc----cchhee---eccceecceeecCCCceEEeecCC
Confidence 5667777777444445566667666666553 222111 233466899999988766666543
No 273
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=84.32 E-value=37 Score=33.93 Aligned_cols=189 Identities=12% Similarity=0.139 Sum_probs=99.7
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcE-EEEeCCCCeEEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNA-YVTDVTGSKIWKV 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~l-yvtd~~~~~I~~v 176 (332)
-+.+|.+++. |. |++.+. ..+.+.+|...+|.-++.+++.+ ....+++.|.+++ .++-....+++.+
T Consensus 402 ~Vr~iSvdp~-G~-wlasGs----dDGtvriWEi~TgRcvr~~~~d~------~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 402 LVRSISVDPS-GE-WLASGS----DDGTVRIWEIATGRCVRTVQFDS------EIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eEEEEEecCC-cc-eeeecC----CCCcEEEEEeecceEEEEEeecc------eeEEEEecCCCCceeEEEEecCceEEe
Confidence 3578999994 76 777653 34668889999998777777742 2334667766542 2222233335555
Q ss_pred cCC-Cc-eEE------EecC--CCCC--Ccc----------------cccCccccCeEEEccCc-eEEEEeCC--CCeEE
Q 020019 177 GVK-GE-FLS------IISS--PLFT--PKE----------------WYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLF 225 (332)
Q Consensus 177 ~~~-g~-~~~------~~~~--~~~~--~p~----------------~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~ 225 (332)
++. |. ... +... ...+ +++ .+....-.+-+.|+.+| +|-+.... +.+|+
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 543 31 000 0000 0000 000 12233445788899999 66655442 34565
Q ss_pred EEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCC-CeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEE--
Q 020019 226 KIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSP-TKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATV-- 302 (332)
Q Consensus 226 ~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~d-G~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-- 302 (332)
.-.+..... . .++. ...+.+..+.|.|- -.|+||.....++...... .+.+.+. +...|-+++++
T Consensus 550 iHQLSK~~s----Q--~PF~-kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq----elvKkL~-tg~kwiS~msihp 617 (733)
T KOG0650|consen 550 IHQLSKRKS----Q--SPFR-KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ----ELVKKLL-TGSKWISSMSIHP 617 (733)
T ss_pred EEecccccc----c--Cchh-hcCCceeEEEecCCCceEEEEeccceEEEehhHH----HHHHHHh-cCCeeeeeeeecC
Confidence 555554321 1 1111 11245667777764 6799998877676544322 2333222 22456677777
Q ss_pred ECCeEEEE
Q 020019 303 KDGRVYLN 310 (332)
Q Consensus 303 ~~g~lyv~ 310 (332)
.++.|.+.
T Consensus 618 ~GDnli~g 625 (733)
T KOG0650|consen 618 NGDNLILG 625 (733)
T ss_pred CCCeEEEe
Confidence 45666664
No 274
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.27 E-value=2.3 Score=25.73 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=22.8
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~ 143 (332)
|++|+... .+.|+.+|.++|+.++.++..
T Consensus 1 ~~v~~~~~------~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVGTP------DGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEETT------TSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEeCC------CCEEEEEECCCCCEEEeeeCC
Confidence 46777733 467999999999999888764
No 275
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.50 E-value=43 Score=32.10 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=57.0
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCcc-ceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCC
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEG-EEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDG 279 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~-~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg 279 (332)
....++.+.+||.+|++-.. +.+++-+ +.+.... .....+... .....+.++.+.+++++|++++....++..+.|
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~-G~l~~S~-d~G~~~~~~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G 357 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRG-GGLYVSK-GTGLTEEDFDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGG 357 (398)
T ss_pred cceeeeeEcCCCCEEEEeCC-ceEEEec-CCCCcccccceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCC
Confidence 34678889999988887654 5565443 2231100 011222211 011235667888899999999876554444445
Q ss_pred ceEEEEEe---eecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 280 WETAAVVA---KFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 280 ~~~~~~~~---~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
++=+... .+..+ + ..+.+ .+++.||...-|
T Consensus 358 -~tW~~~~~~~~~~~~-l---y~v~f~~~~~g~~~G~~G 391 (398)
T PLN00033 358 -KSWKRDKGADNIAAN-L---YSVKFFDDKKGFVLGNDG 391 (398)
T ss_pred -cceeEccccCCCCcc-e---eEEEEcCCCceEEEeCCc
Confidence 3322222 11111 2 35666 678899866544
No 276
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=83.14 E-value=1 Score=27.56 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=16.5
Q ss_pred CCCeEEEeCCCeEEEEeCC
Q 020019 251 FGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~~~ 269 (332)
.+.+|++|++|++||++..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 5789999999999999743
No 277
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.12 E-value=42 Score=31.95 Aligned_cols=122 Identities=11% Similarity=0.188 Sum_probs=75.6
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEE-ecCCCCCCcccccCccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSI-ISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~-~~~~~~~~p~~~~~~~~ 202 (332)
.+|..||.++.......++ .+....+.+..+|.=..+.+....+-.+|..++..+. +..+.+.. ..-
T Consensus 322 kkvRfwD~Rs~~~~~sv~~------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~------asD 389 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPL------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC------ASD 389 (459)
T ss_pred cceEEEeccCCceeeEeec------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc------ccc
Confidence 4577888887776655554 2355667777888645555777788888877654432 22222210 112
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCe
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTK 262 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~ 262 (332)
-+-++|+||+.+..+-..+++||.++..+++ ..+.+..++ .-+....+++++-|.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK----lE~~l~~s~-s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGK----LEKVLSLST-SNAAITSLSWNPSGS 444 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCce----EEEEeccCC-CCcceEEEEEcCCCc
Confidence 5788999999766777788999999999884 333344332 111334556666665
No 278
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.67 E-value=68 Score=33.80 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=64.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCC-----
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFG----- 120 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~----- 120 (332)
...++.++|..++.+++..++.|.++|.+..+. ++ ++-.+ ...-+-++.+|. .+||.+..|.+-
T Consensus 252 nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----v~--tfrre----ndRFW~laahP~-lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 252 NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----VQ--TFRRE----NDRFWILAAHPE-LNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred CcceEEecCccceeEecCCCccEEEEecccccc----ee--eeecc----CCeEEEEEecCC-cceeeeecCCceEEEEE
Confidence 345788999988888888889999999875542 22 23211 113445555654 555555443210
Q ss_pred ----------------CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEe
Q 020019 121 ----------------NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTD 167 (332)
Q Consensus 121 ----------------~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd 167 (332)
-+...|..||+.+.+-.....+..++....-+..+...|. |.+.++.
T Consensus 321 eRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 321 ERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred cccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 0123566677776555555555444322345667888886 5556653
No 279
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=82.26 E-value=44 Score=31.25 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=78.7
Q ss_pred cccceEEcCCCC-EEEEEec-C---CeEEEEECCCCCCCccceeeeEEec--ccCcCCCccceEEEe-CC-CCeEEEEEe
Q 020019 46 FRECAKWDDSGR-RFIVSFL-D---GGIGQVAVPDDYPPGTVLEEVTLVK--DLELTGNGSLGLVLD-HP-RNRLLVVAA 116 (332)
Q Consensus 46 ~pegia~d~~g~-~~~~~~~-~---g~I~~vd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gi~vd-~~-~g~l~v~~~ 116 (332)
+.-.+.|.++++ +++.-+. . -.|..++..++.. + .... .++.- .....+.+- ++ +..+|+...
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-----~--~~~~e~~~~Wv-~~~~~~~~~~~~~~~~l~~s~~ 256 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-----R--VVLEETSDGWV-DVYDPPHFLGPDGNEFLWISER 256 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-----E--EEEEEESSSSS-SSSSEEEE-TTTSSEEEEEEET
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-----e--EEEEecCCcce-eeecccccccCCCCEEEEEEEc
Confidence 445678888888 5554422 1 2478888876653 1 1111 12221 112334432 32 245666664
Q ss_pred CcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCc-cceEECCCC-cEEEEeCC----CCeEEEEcCC-CceEEEecCC
Q 020019 117 DVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCA-DDVTVDAEG-NAYVTDVT----GSKIWKVGVK-GEFLSIISSP 189 (332)
Q Consensus 117 ~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~-ndiavd~dG-~lyvtd~~----~~~I~~v~~~-g~~~~~~~~~ 189 (332)
+ +...|+.++..++... .+. .+.--. .-+.+|+++ .||++... ...||+++.+ +.....+...
T Consensus 257 ~----G~~hly~~~~~~~~~~---~lT---~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~ 326 (353)
T PF00930_consen 257 D----GYRHLYLYDLDGGKPR---QLT---SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE 326 (353)
T ss_dssp T----SSEEEEEEETTSSEEE---ESS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT
T ss_pred C----CCcEEEEEccccccee---ccc---cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC
Confidence 3 3567999999876643 332 112222 347788885 58988665 4589999988 6555443221
Q ss_pred CCCCcccccCccccC-eEEEccCceEEE
Q 020019 190 LFTPKEWYKNLVGLN-GIVYHPDGFLIV 216 (332)
Q Consensus 190 ~~~~p~~~~~~~~~n-Gi~~~~dG~Lyv 216 (332)
.+.+ .+.++|||..|+
T Consensus 327 -----------~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 327 -----------DGDHYSASFSPDGKYYV 343 (353)
T ss_dssp -----------SSTTEEEEE-TTSSEEE
T ss_pred -----------CCCceEEEECCCCCEEE
Confidence 2234 899999994444
No 280
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.18 E-value=50 Score=31.84 Aligned_cols=115 Identities=12% Similarity=0.108 Sum_probs=69.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCC-------CCccceEECCCCcEEEEeCCC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGK-------SCADDVTVDAEGNAYVTDVTG 170 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~-------~~~ndiavd~dG~lyvtd~~~ 170 (332)
++..+++-.+ ..||...+ .+.|+.|++...+++....+..+..+. .--+.+++=+.-+++.+-+.+
T Consensus 329 sidcv~~In~--~HfvsGSd-----nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 329 SIDCVAFIND--EHFVSGSD-----NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred CeeeEEEecc--cceeeccC-----CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 5666776543 34666543 467888998877777666553221111 135677887776788887776
Q ss_pred Ce--EEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEE
Q 020019 171 SK--IWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKI 227 (332)
Q Consensus 171 ~~--I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~i 227 (332)
|. +|++...-+....+.+-.+ ....|.|+|+.+| .++++-....++-|+
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls~--------~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLSL--------VGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CceEEEEecCCccccceeeeccc--------ccEEEEEEEccCCCEEEEeccccccccee
Confidence 64 6666654333333222111 1347999999999 788886655555333
No 281
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=81.88 E-value=44 Score=31.04 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=87.4
Q ss_pred CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC--CCeEEEEEeCcCCCccceEEEEECCCC
Q 020019 57 RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP--RNRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 57 ~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~--~g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
++..+++.+|.|.-+|+.+++. ++ .+-..|. ..+|+++-.. -+.++.|..+ +.|..||.++.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~----l~--~fk~~~~----~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL----LE--EFKGPPA----TTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQ 104 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh----hh--eecCCCC----cccceEEecCCCCCeeEEeccC------CeEEEEEeecc
Confidence 5666778899999999988763 33 2322222 4567777542 1456666543 56889999987
Q ss_pred cEEEEEecCCCCCCCCCccceEECC--CCcEEEEeCC----CCeEEEEcCCC--ceEEEecCCCCCCcccccCccccCeE
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDA--EGNAYVTDVT----GSKIWKVGVKG--EFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~--dG~lyvtd~~----~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
....++...+ .+..-.+.+|. +++++.+.+. ...|+-+|..- +..+.+... ...-.+-|
T Consensus 105 ~e~a~~~~~~----~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS---------H~DDVT~l 171 (376)
T KOG1188|consen 105 AESARISWTQ----QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES---------HNDDVTQL 171 (376)
T ss_pred hhhhheeccC----CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh---------ccCcceeE
Confidence 6555554421 11112345555 5677776542 34455555432 212212111 11224678
Q ss_pred EEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 207 VYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 207 ~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
.|+|.. .|.++-+-.|-|-.||....
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCC
Confidence 899999 99999888898888887743
No 282
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=81.61 E-value=50 Score=34.62 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=84.9
Q ss_pred CccccceEEcCC-CCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEE-------EeCCCCeEEEE
Q 020019 44 SFFRECAKWDDS-GRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLV-------LDHPRNRLLVV 114 (332)
Q Consensus 44 ~~~pegia~d~~-g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~-------vd~~~g~l~v~ 114 (332)
.+.|..+-.+.+ .++++.+ .....||++|...|+ +++ +|--.-.. ....++ +++ ...|++
T Consensus 480 ~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GK----VV~--eW~~~~~~---~v~~~~p~~K~aqlt~--e~tflG 548 (794)
T PF08553_consen 480 NFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGK----VVE--EWKVHDDI---PVVDIAPDSKFAQLTN--EQTFLG 548 (794)
T ss_pred ccCcchhhhhccccceEeecCCCCCceEEEecCCCc----EEE--EeecCCCc---ceeEecccccccccCC--CceEEE
Confidence 346666555444 4566666 456789999999888 455 45421110 011221 123 233555
Q ss_pred EeCcCCCccceEEEEECCCC--cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCce-EEEecCCCC
Q 020019 115 AADVFGNKYSAVAAYDLSTW--NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEF-LSIISSPLF 191 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g--~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~-~~~~~~~~~ 191 (332)
.. .+.|+++|++-. +++. .+... .........+|.+.+|.|-|+. ..|.|.-+|.-|+. ...+ +.+
T Consensus 549 ls------~n~lfriDpR~~~~k~v~-~~~k~-Y~~~~~Fs~~aTt~~G~iavgs-~~G~IRLyd~~g~~AKT~l--p~l 617 (794)
T PF08553_consen 549 LS------DNSLFRIDPRLSGNKLVD-SQSKQ-YSSKNNFSCFATTEDGYIAVGS-NKGDIRLYDRLGKRAKTAL--PGL 617 (794)
T ss_pred EC------CCceEEeccCCCCCceee-ccccc-cccCCCceEEEecCCceEEEEe-CCCcEEeecccchhhhhcC--CCC
Confidence 43 357899998742 2221 11110 1123456678889999777764 56778778766642 1111 122
Q ss_pred CCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeC
Q 020019 192 TPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 192 ~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~ 229 (332)
..| ..||.++.||...++...+ .|.-|+.
T Consensus 618 G~p--------I~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 618 GDP--------IIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred CCC--------eeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 222 4799999999444444433 4555654
No 283
>PRK13614 lipoprotein LpqB; Provisional
Probab=81.38 E-value=64 Score=32.56 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=66.0
Q ss_pred ccceEECCCCcEEEEeCCCC-eEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCC-CeEEEEeC
Q 020019 152 ADDVTVDAEGNAYVTDVTGS-KIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS-GNLFKIDI 229 (332)
Q Consensus 152 ~ndiavd~dG~lyvtd~~~~-~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~-~~i~~id~ 229 (332)
+...++.++|..+..-...+ .++...+.+....++....+..| .|+++|.+|....++ ++|.++..
T Consensus 345 ~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~g~~Lt~P------------S~d~~g~vWtv~~g~~~~vv~~~~ 412 (573)
T PRK13614 345 PASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTSGSTLTRP------------SFSPQDWVWTAGPGGNGRIVAYRP 412 (573)
T ss_pred ccceeecCCCceEEEecCCCcEEEEecCCCcceeeecCCCccCC------------cccCCCCEEEeeCCCCceEEEEec
Confidence 33456666654322222222 45544444433333333334444 588889999887644 47888765
Q ss_pred CC-CCCccceeEEEEecCCCCC--CCCeEEEeCCCe--EEEE-eCCc-----eEEEEcCCCceEEEEEeeecCCCcccce
Q 020019 230 VD-GVGEGEEIKLIRVAGGPLS--FGDGLELLSPTK--LVVA-GNPS-----ARLVESSDGWETAAVVAKFSGPVHRLAT 298 (332)
Q Consensus 230 ~~-~~~~~~~~~~v~~~g~~~~--~pdGi~~~~dG~--l~va-~~~~-----~~~v~~~dg~~~~~~~~~~~~~~~~~pt 298 (332)
.+ +......+..+..+ .+. ....+.+.+||. ..+. ++.. ..+++..+| .-..+...+.......++
T Consensus 413 ~g~~~~~~~~~~~v~~~--~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G-~P~~L~~~~~~~~~~~~~ 489 (573)
T PRK13614 413 TGVAEGAQAPTVTLTAD--WLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDG-TPRELTAPITLAADSDAD 489 (573)
T ss_pred CCCcccccccceeeccc--ccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCC-CeEEccCceecccCCCcc
Confidence 42 11100111122221 111 234566666665 2222 1221 123455666 322333222211123456
Q ss_pred EEEE-ECCeEEEE
Q 020019 299 AATV-KDGRVYLN 310 (332)
Q Consensus 299 ~va~-~~g~lyv~ 310 (332)
++.+ .++.|.|.
T Consensus 490 sl~W~~~~sl~V~ 502 (573)
T PRK13614 490 TGAWVGDSTVVVT 502 (573)
T ss_pred eeEEcCCCEEEEE
Confidence 7777 77777773
No 284
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=81.24 E-value=52 Score=31.80 Aligned_cols=125 Identities=15% Similarity=0.122 Sum_probs=67.0
Q ss_pred ccceEEcCCCCEEEEEec--------------CCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeE
Q 020019 47 RECAKWDDSGRRFIVSFL--------------DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRL 111 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~--------------~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l 111 (332)
-.++..+.+|++|+.+.. ...|+||.....+++ .--+..-....+ ....++..-.+ +.
T Consensus 277 ~~~i~~~enGDvYvfS~s~a~~~~~~~~~stkPSGilRIk~G~teFD-----~~Yffnle~~sgg~~~~~~~yIG~-~k- 349 (435)
T PF14298_consen 277 YNGIWKDENGDVYVFSPSYAKTMSDGKSQSTKPSGILRIKKGTTEFD-----KSYFFNLEAKSGGYKFFRVWYIGN-NK- 349 (435)
T ss_pred eeeeeEeCCCCEEEEcCcccccccccccccCCccEEEEECCCCcccC-----cceEeeeecccCCcceEEEEEecC-CE-
Confidence 357888999999976621 124888875443321 101221111122 22334333332 44
Q ss_pred EEEEeCcC---C--CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC---C-CCeEEEEcCCC
Q 020019 112 LVVAADVF---G--NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV---T-GSKIWKVGVKG 180 (332)
Q Consensus 112 ~v~~~~~~---~--~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~---~-~~~I~~v~~~g 180 (332)
+++..... . ....++.++|..++++.+...+|.. ......+...+ .+|.+|+.-. + ...||++|+..
T Consensus 350 Fll~~~~~~~~~~~~~~~~laI~d~~~kt~t~V~glP~~-~is~~~~~~~v-e~G~aYi~Vtt~~g~~~~IY~iDp~T 425 (435)
T PF14298_consen 350 FLLQMYDKALTGTYSDAKKLAIFDVSNKTFTWVTGLPAD-LISGFGNAPYV-ENGKAYIPVTTEDGSDPYIYKIDPAT 425 (435)
T ss_pred EEEEEecccccccCCccceEEEEEccCceeEEeccCChh-hccccccceEe-eCCEEEEEEeecCCCceeEEEEcCcc
Confidence 33322111 1 2345788899999888877667432 11234444444 4688898533 2 36899999873
No 285
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.66 E-value=55 Score=31.39 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=52.0
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeCCCCCCcccee-EEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCCce
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEI-KLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWE 281 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~-~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~ 281 (332)
..++...+||.+++.-. .+.+++-.-... .. +.+..+ .-....++.+.++|.+|++.+....+....+| .
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~-----~~W~~~~~~--~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G-~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQ-----PYWQPHNRA--SARRIQNMGWRADGGLWLLTRGGGLYVSKGTG-L 311 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecCCCC-----cceEEecCC--CccceeeeeEcCCCCEEEEeCCceEEEecCCC-C
Confidence 35567778885555443 345665443322 11 323332 11345678888999999998775444444455 2
Q ss_pred EE---EEEeeecCCCcccceEEEE-ECCeEEEEEecC
Q 020019 282 TA---AVVAKFSGPVHRLATAATV-KDGRVYLNHMLG 314 (332)
Q Consensus 282 ~~---~~~~~~~~~~~~~pt~va~-~~g~lyv~~~~g 314 (332)
.- +..+..........+.+.+ .++.+|++...|
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G 348 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG 348 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEECCC
Confidence 21 1121100001112355555 566677655444
No 286
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.60 E-value=52 Score=31.26 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred cceEEcCCCCEEEEE-e--cC-CeEEEEECCCCCCCccceeeeEEecccCcCCCcc-ceEEEeCCCCeEEEEEeCcCCCc
Q 020019 48 ECAKWDDSGRRFIVS-F--LD-GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 48 egia~d~~g~~~~~~-~--~~-g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
-++..+++++.++.. . .+ ..++.++..++..+ -.+...+.. ... +. .-+... ++.+|+..+... .
T Consensus 230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~--~~~~~~l~~--~~~--~~~~~v~~~--~~~~yi~Tn~~a--~ 299 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP--DAKPKLLSP--RED--GVEYYVDHH--GDRLYILTNDDA--P 299 (414)
T ss_dssp EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS--S-SEEEEEE--SSS--S-EEEEEEE--TTEEEEEE-TT---T
T ss_pred EEEEecCcccEEEEEEEccccCCeEEEEeccccCCC--cCCcEEEeC--CCC--ceEEEEEcc--CCEEEEeeCCCC--C
Confidence 367788999876654 2 23 57999998764000 001112221 111 22 222222 378888776432 3
Q ss_pred cceEEEEECCCCcE-EEEEecCCCCCCCCCccceEECCCCcEEEEeC--CCCeEEEEcCC-CceEEEecCCCCCCccccc
Q 020019 123 YSAVAAYDLSTWNR-LFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV--TGSKIWKVGVK-GEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 123 ~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~--~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~ 198 (332)
..+|+.++++.... .+...+. +........++.+..+. |++... ...+|..++.+ ++.......+.
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-------- 369 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLDDGKESREIPLPE-------- 369 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT-TEEEEEEESSS--------
T ss_pred CcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECCCCcEEeeecCCc--------
Confidence 56899999876542 1111221 12222456777776554 665544 44578888888 66544332211
Q ss_pred CccccCeEEEccCc-eEEEEeCC---CCeEEEEeCCCCC
Q 020019 199 NLVGLNGIVYHPDG-FLIVIHTF---SGNLFKIDIVDGV 233 (332)
Q Consensus 199 ~~~~~nGi~~~~dG-~Lyva~~~---~~~i~~id~~~~~ 233 (332)
.....++..++++ .+++.-+. ..++|++|+.+++
T Consensus 370 -~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 370 -AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp -SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred -ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 1122455555566 66655442 4579999999883
No 287
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=80.36 E-value=81 Score=33.12 Aligned_cols=148 Identities=13% Similarity=0.176 Sum_probs=81.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECC------CCcEEEEeCCCC
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA------EGNAYVTDVTGS 171 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~------dG~lyvtd~~~~ 171 (332)
.|.-+.++..+..+++.+.. ...+|+.+|++.|+++..+.+.. . .-..+++-+. +-..|+.= ..+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~----~~~~ly~mDLe~GKVV~eW~~~~--~--~~v~~~~p~~K~aqlt~e~tflGl-s~n 552 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPN----NPNKLYKMDLERGKVVEEWKVHD--D--IPVVDIAPDSKFAQLTNEQTFLGL-SDN 552 (794)
T ss_pred CcchhhhhccccceEeecCC----CCCceEEEecCCCcEEEEeecCC--C--cceeEecccccccccCCCceEEEE-CCC
Confidence 35444444433555555532 24679999999999988887732 1 1123333321 11344443 357
Q ss_pred eEEEEcCC--CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCC
Q 020019 172 KIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPL 249 (332)
Q Consensus 172 ~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~ 249 (332)
+++++||. |.....-....+. ....-..++-+.+|+|.|+. ..|.|.-++.. ++- ....++.-|
T Consensus 553 ~lfriDpR~~~~k~v~~~~k~Y~------~~~~Fs~~aTt~~G~iavgs-~~G~IRLyd~~-g~~---AKT~lp~lG--- 618 (794)
T PF08553_consen 553 SLFRIDPRLSGNKLVDSQSKQYS------SKNNFSCFATTEDGYIAVGS-NKGDIRLYDRL-GKR---AKTALPGLG--- 618 (794)
T ss_pred ceEEeccCCCCCceeeccccccc------cCCCceEEEecCCceEEEEe-CCCcEEeeccc-chh---hhhcCCCCC---
Confidence 89999986 3212111111121 11234578889999999886 46667666643 211 111122111
Q ss_pred CCCCeEEEeCCCeEEEEeC
Q 020019 250 SFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 250 ~~pdGi~~~~dG~l~va~~ 268 (332)
.-.-||.+..||+..++.-
T Consensus 619 ~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILATC 637 (794)
T ss_pred CCeeEEEecCCCcEEEEee
Confidence 1235899999999888863
No 288
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=80.04 E-value=42 Score=29.63 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=75.1
Q ss_pred CccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEE--EecCCCCCCCCCccceEECCC-CcEEEEeCCCCeE
Q 020019 97 NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFL--TQLSGPSDGKSCADDVTVDAE-GNAYVTDVTGSKI 173 (332)
Q Consensus 97 ~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~--~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~~~~I 173 (332)
....||-+-|.+|.||.... .++|+.+|+.+|..... ..+..+- ....-++-+.|- .+|.|... .++-
T Consensus 27 e~l~GID~Rpa~G~LYgl~~------~g~lYtIn~~tG~aT~vg~s~~~~al--~g~~~gvDFNP~aDRlRvvs~-~GqN 97 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGS------TGRLYTINPATGAATPVGASPLTVAL--SGTAFGVDFNPAADRLRVVSN-TGQN 97 (236)
T ss_pred CeEEEEEeecCCCCEEEEeC------CCcEEEEECCCCeEEEeecccccccc--cCceEEEecCcccCcEEEEcc-CCcE
Confidence 36789999999999998854 46899999999986544 2232111 122556777775 57876533 6777
Q ss_pred EEEcCC-CceEEEecCCCCCCccccc-CccccCeEEEccC------c-eEEEEeCCCCeEEEEe-CCCC
Q 020019 174 WKVGVK-GEFLSIISSPLFTPKEWYK-NLVGLNGIVYHPD------G-FLIVIHTFSGNLFKID-IVDG 232 (332)
Q Consensus 174 ~~v~~~-g~~~~~~~~~~~~~p~~~~-~~~~~nGi~~~~d------G-~Lyva~~~~~~i~~id-~~~~ 232 (332)
+|++++ |.....-.+-.+....... ......+.++... . +||--|...+++++-. +.++
T Consensus 98 lR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~G 166 (236)
T PF14339_consen 98 LRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDG 166 (236)
T ss_pred EEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCC
Confidence 888887 4422211111111000000 0122345555433 5 7899999888888874 4455
No 289
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=79.49 E-value=45 Score=31.64 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=62.6
Q ss_pred CccceEEEeCCCCeEEEEEeCcCCCccceEEEEECC--------C----CcEEEE--EecCCCCCCCCCccceEECCCCc
Q 020019 97 NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLS--------T----WNRLFL--TQLSGPSDGKSCADDVTVDAEGN 162 (332)
Q Consensus 97 ~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~--------~----g~~~~~--~~l~~~~~~~~~~ndiavd~dG~ 162 (332)
...++++++++ |.+..+..+. +.++.|-.. + .+..+. ..+.+ -..-+.|++..+|++
T Consensus 66 ~aVN~vRf~p~-gelLASg~D~-----g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 66 RAVNVVRFSPD-GELLASGGDG-----GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG---HRDDIYDLAWSPDSN 136 (434)
T ss_pred ceeEEEEEcCC-cCeeeecCCC-----ceEEEEEecCcCCccccchhhhCccceEEEEEecc---cccchhhhhccCCCc
Confidence 46899999996 9888876652 345555443 2 011111 12211 124577899999999
Q ss_pred EEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCce
Q 020019 163 AYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGF 213 (332)
Q Consensus 163 lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~ 213 (332)
..++.+..+.++.+|.. |+....... ....++|++|||-..
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~~d----------h~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAILDD----------HEHYVQGVAWDPLNQ 178 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeeccc----------cccccceeecchhhh
Confidence 99999998888888865 665544322 123568999988763
No 290
>PHA02790 Kelch-like protein; Provisional
Probab=79.47 E-value=66 Score=31.58 Aligned_cols=105 Identities=7% Similarity=-0.113 Sum_probs=53.2
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecC
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISS 188 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~ 188 (332)
|+||+..+... ....+..||+++++......++ ..+....++--+|.||+.- |.+.++|++.. .|-..
T Consensus 363 g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~-----~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~--~W~~~ 430 (480)
T PHA02790 363 NVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTY-----YPHYKSCALVFGRRLFLVG---RNAEFYCESSN--TWTLI 430 (480)
T ss_pred CEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCC-----CccccceEEEECCEEEEEC---CceEEecCCCC--cEeEc
Confidence 89999854311 1234678999876554322221 1222222333357899974 45667787632 22111
Q ss_pred CCCCCcccccCccccCeEEEccCceEEEEeCCC-----CeEEEEeCCCC
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS-----GNLFKIDIVDG 232 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~-----~~i~~id~~~~ 232 (332)
+.+..| ..-.|++.- +|.||+.-..+ ..+.++|+.+.
T Consensus 431 ~~m~~~------r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 431 DDPIYP------RDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCCC------ccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCC
Confidence 222222 122355554 67888864321 34556666544
No 291
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=79.37 E-value=18 Score=33.72 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=84.9
Q ss_pred CCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCC
Q 020019 54 DSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLST 133 (332)
Q Consensus 54 ~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~ 133 (332)
-+.+++++...+.+|..+|-.+++. +. +++..- ..+.++.+.. |.+..|..+ -.+.+||+.+
T Consensus 245 yd~rviisGSSDsTvrvWDv~tge~----l~--tlihHc----eaVLhlrf~n--g~mvtcSkD------rsiaVWdm~s 306 (499)
T KOG0281|consen 245 YDERVIVSGSSDSTVRVWDVNTGEP----LN--TLIHHC----EAVLHLRFSN--GYMVTCSKD------RSIAVWDMAS 306 (499)
T ss_pred ccceEEEecCCCceEEEEeccCCch----hh--HHhhhc----ceeEEEEEeC--CEEEEecCC------ceeEEEeccC
Confidence 3345555556677888888887763 22 333222 2678999984 666666543 3577888865
Q ss_pred CcEEEEE-ecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEc-c
Q 020019 134 WNRLFLT-QLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYH-P 210 (332)
Q Consensus 134 g~~~~~~-~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~-~ 210 (332)
-..+... -+.+ -....|-+.+|. ...|+.++.-.|-..+.+ ++..+.++.. -.|||-- -
T Consensus 307 ps~it~rrVLvG---HrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gH-------------kRGIAClQY 368 (499)
T KOG0281|consen 307 PTDITLRRVLVG---HRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGH-------------KRGIACLQY 368 (499)
T ss_pred chHHHHHHHHhh---hhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcc-------------cccceehhc
Confidence 3321111 1111 123445555554 477788887777777765 4555443221 2356543 2
Q ss_pred CceEEEEeCCCCeEEEEeCCCC
Q 020019 211 DGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 211 dG~Lyva~~~~~~i~~id~~~~ 232 (332)
.|.|.|+-+..++|.-++...|
T Consensus 369 r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 369 RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred cCeEEEecCCCceEEEEecccc
Confidence 4699999998888888888766
No 292
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=79.37 E-value=25 Score=36.32 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=72.6
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..++++..+|..+|+.-+++-+.++...+++. +++..-+ ....++.+.++ +.+|..... .+.+
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------qfLPRLg---s~I~~i~vS~d-s~~~sl~~~-----DNqI 316 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--------QFLPRLG---SPILHIVVSPD-SDLYSLVLE-----DNQI 316 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCc--------ccccccC---CeeEEEEEcCC-CCeEEEEec-----CceE
Confidence 45789999998888777788899998877652 4654332 24579999997 777866553 3566
Q ss_pred EEEECCCCcEEEEEe-cCCC-----CCCCCCccceEECCCCcEEEEeCCCCeEEEEcC
Q 020019 127 AAYDLSTWNRLFLTQ-LSGP-----SDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~-l~~~-----~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~ 178 (332)
..+...+.+....+. +..+ .....++.++.+||.=+..+=+...+.|.-+|+
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 666654444332222 1111 112578899999996344444445566666664
No 293
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=79.35 E-value=57 Score=30.76 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=103.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEE-----ec-c-------c--CcCC--CccceEEEeCCC
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTL-----VK-D-------L--ELTG--NGSLGLVLDHPR 108 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~-----~~-~-------~--~~~~--~~~~gi~vd~~~ 108 (332)
..+.+.++++|..+.+..++..|-.++...... +..|...- .. . | .+.| ..+..+...+.
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~--~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~- 271 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE--DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA- 271 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCcc--ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC-
Confidence 567899999999998888788777776111110 00110000 00 0 0 0111 13456777764
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC---CceEE-
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK---GEFLS- 184 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~---g~~~~- 184 (332)
+.+|-+..| ..|.+||+++|....... +....+.+...+.-++.++-+....|..+||. |+...
T Consensus 272 ~v~yS~SwD------HTIk~WDletg~~~~~~~------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 272 TVIYSVSWD------HTIKVWDLETGGLKSTLT------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred CceEeeccc------ceEEEEEeecccceeeee------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 788888764 358899999987754332 23567789999988899988888888888886 44332
Q ss_pred -EecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 185 -IISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 185 -~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
+..+ ..-..++-++|.. +++++-...+++-..|..+.
T Consensus 340 s~~gH-----------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 340 SLIGH-----------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eeecc-----------hhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 2222 1235688899998 89998888888777777754
No 294
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=79.25 E-value=52 Score=30.27 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=80.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCC-cEEEEEecCCCCCCCCCccceEE-CCC-CcEEEEeC--CCCe
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTW-NRLFLTQLSGPSDGKSCADDVTV-DAE-GNAYVTDV--TGSK 172 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g-~~~~~~~l~~~~~~~~~~ndiav-d~d-G~lyvtd~--~~~~ 172 (332)
...++.+.+ +++.|+.. ++|++|..... +....++. ...|+|+.. .+. +.-+++-. ..|+
T Consensus 96 ~I~~V~l~r--~riVvvl~-------~~I~VytF~~n~k~l~~~et------~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 96 EIKAVKLRR--DRIVVVLE-------NKIYVYTFPDNPKLLHVIET------RSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred ceeeEEEcC--CeEEEEec-------CeEEEEEcCCChhheeeeec------ccCCCceEeecCCCCceEEEcCCCccce
Confidence 356888886 57777754 47888877532 33332222 345666443 443 33344332 3566
Q ss_pred EEEEcCCCc-e--EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEE-eCCCCCCccceeEEEEecCCC
Q 020019 173 IWKVGVKGE-F--LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKI-DIVDGVGEGEEIKLIRVAGGP 248 (332)
Q Consensus 173 I~~v~~~g~-~--~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~i-d~~~~~~~~~~~~~v~~~g~~ 248 (332)
|..++..-. . ...+. ........++++-+|++..+-+..|++.|| |..++ +.++++.-. ..
T Consensus 161 vQi~dL~~~~~~~p~~I~----------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g----~~l~E~RRG-~d 225 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIIN----------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG----TLLQELRRG-VD 225 (346)
T ss_pred EEEEEhhhcCcCCceEEE----------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC----cEeeeeecC-Cc
Confidence 666664311 1 01110 122345688999999999999999998775 66666 356666532 23
Q ss_pred CCCCCeEEEeCCCeEEEEe
Q 020019 249 LSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 249 ~~~pdGi~~~~dG~l~va~ 267 (332)
-.....|++.++..+..+.
T Consensus 226 ~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 226 RADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred hheEEEEEeCCCccEEEEE
Confidence 3455678888886554443
No 295
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=79.10 E-value=51 Score=30.11 Aligned_cols=185 Identities=17% Similarity=0.142 Sum_probs=101.1
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY 129 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~ 129 (332)
+...+.-+.+++..|+++|-.||+-+... .. ++ + .++.+..|-+.. ++|.|...+ .++..|
T Consensus 100 i~~~~~~~~vIsgsWD~~ik~wD~R~~~~----~~--~~--d---~~kkVy~~~v~g--~~LvVg~~~------r~v~iy 160 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDKTIKFWDPRNKVV----VG--TF--D---QGKKVYCMDVSG--NRLVVGTSD------RKVLIY 160 (323)
T ss_pred EEeeccCCeEEEcccCccEEEEecccccc----cc--cc--c---cCceEEEEeccC--CEEEEeecC------ceEEEE
Confidence 44444445566667788888888764220 01 11 1 123566776664 677776653 478899
Q ss_pred ECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEE--EcCCC----ceEEEecCCCCCCcccccCcccc
Q 020019 130 DLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWK--VGVKG----EFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 130 d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~--v~~~g----~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
|+++-.......- ..-+-....++.-|++.=|+..+-.|+|.. +|+.- +--.+--+..-... ....--.
T Consensus 161 DLRn~~~~~q~re---S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~--~~~~yPV 235 (323)
T KOG1036|consen 161 DLRNLDEPFQRRE---SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD--TEIIYPV 235 (323)
T ss_pred Ecccccchhhhcc---ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC--ceEEEEe
Confidence 9987543221110 000123567889998778999888898887 44431 11111000000000 0011235
Q ss_pred CeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 204 NGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
|.|+|+|-- +++.+ ...|-|..+|+...+ ....+.- .-....-++++.||.+...
T Consensus 236 Nai~Fhp~~~tfaTg-GsDG~V~~Wd~~~rK----rl~q~~~---~~~SI~slsfs~dG~~LAi 291 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATG-GSDGIVNIWDLFNRK----RLKQLAK---YETSISSLSFSMDGSLLAI 291 (323)
T ss_pred ceeEeccccceEEec-CCCceEEEccCcchh----hhhhccC---CCCceEEEEeccCCCeEEE
Confidence 999999885 66544 456788888887542 3332221 1123446788888765544
No 296
>PRK13613 lipoprotein LpqB; Provisional
Probab=78.81 E-value=79 Score=32.12 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=49.2
Q ss_pred EEccCceEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCC--CCCeEEEeCCCe--EEEEeC-C--c---eEEE
Q 020019 207 VYHPDGFLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLS--FGDGLELLSPTK--LVVAGN-P--S---ARLV 274 (332)
Q Consensus 207 ~~~~dG~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~--~pdGi~~~~dG~--l~va~~-~--~---~~~v 274 (332)
.|+.+|.+|+.+.. ..++.++--.++. . ..+..+ .+. ....+.+.+||. ..+.+. . . ..++
T Consensus 415 S~d~~g~vWtvd~~~~~~~vl~v~~~~G~----~-~~V~~~--~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~ 487 (599)
T PRK13613 415 SWDGRGDLWVVDRDPADPRLLWLLQGDGE----P-VEVRTP--ELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIV 487 (599)
T ss_pred cCcCCCCEEEecCCCCCceEEEEEcCCCc----E-EEeecc--ccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEE
Confidence 58888899998763 2345555444442 2 223332 121 345566667765 233332 1 1 2345
Q ss_pred EcCCCceEEEEEeeec-CCCcccceEEEE-ECCeEEE
Q 020019 275 ESSDGWETAAVVAKFS-GPVHRLATAATV-KDGRVYL 309 (332)
Q Consensus 275 ~~~dg~~~~~~~~~~~-~~~~~~pt~va~-~~g~lyv 309 (332)
+..+| . .++..... .+.+..++.+.+ .+++|.|
T Consensus 488 R~~~G-~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~V 522 (599)
T PRK13613 488 RDAKA-V-VSVEEFRSLAPELEDVTDMSWAGDSQLVV 522 (599)
T ss_pred eCCCC-c-EEeeccEEeccCCCccceeEEcCCCEEEE
Confidence 56666 3 23333222 233445788888 7788887
No 297
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.44 E-value=92 Score=32.67 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=84.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCC------ccceEEEeC----------------CCCeEE
Q 020019 55 SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGN------GSLGLVLDH----------------PRNRLL 112 (332)
Q Consensus 55 ~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~gi~vd~----------------~~g~l~ 112 (332)
++.+|+++. .+.|+.+|..+++. .|.-+++.... ...|+.+-. ..+++|
T Consensus 194 gg~lYv~t~-~~~V~ALDa~TGk~--------lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~ 264 (764)
T TIGR03074 194 GDTLYLCTP-HNKVIALDAATGKE--------KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII 264 (764)
T ss_pred CCEEEEECC-CCeEEEEECCCCcE--------EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE
Confidence 345555543 58899999988872 34433332100 123343321 125788
Q ss_pred EEEeCcCCCccceEEEEECCCCcEEEEEecCCCC----------CCC-CCccceEECCCCcEEEEeC---------CCCe
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPS----------DGK-SCADDVTVDAEGNAYVTDV---------TGSK 172 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~----------~~~-~~~ndiavd~dG~lyvtd~---------~~~~ 172 (332)
+...+ ++|+.+|.++|++.+.+...+.. .+. ......++. +|.+|+..+ ..|.
T Consensus 265 ~~T~D------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 265 LPTSD------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred EecCC------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcE
Confidence 87653 67999999999987654322110 000 011112332 456787643 2578
Q ss_pred EEEEcCC-CceEEEecC--CCCCC---cccccCcccc---CeEEEccCc-eEEEEeC-----------------CCCeEE
Q 020019 173 IWKVGVK-GEFLSIISS--PLFTP---KEWYKNLVGL---NGIVYHPDG-FLIVIHT-----------------FSGNLF 225 (332)
Q Consensus 173 I~~v~~~-g~~~~~~~~--~~~~~---p~~~~~~~~~---nGi~~~~dG-~Lyva~~-----------------~~~~i~ 225 (332)
|+.+|.. |+..-.... +.... +...-...++ ...++|++. .+|+.-. .++.|+
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 9999976 664422221 11110 1100011222 356778775 7777321 246677
Q ss_pred EEeCCCCC
Q 020019 226 KIDIVDGV 233 (332)
Q Consensus 226 ~id~~~~~ 233 (332)
.+|+++|+
T Consensus 418 ALD~~TGk 425 (764)
T TIGR03074 418 ALDATTGK 425 (764)
T ss_pred EEeCCCCc
Confidence 88888873
No 298
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=78.32 E-value=28 Score=35.53 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=66.8
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC-CCCeEEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-TGSKIWKV 176 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-~~~~I~~v 176 (332)
..+.|++||.-+.+.++..+ ..|.+||.++|+....+.-. .+...-+=-+..||.| +|++.+ .+..+-.+
T Consensus 598 TlYDm~Vdp~~k~v~t~cQD------rnirif~i~sgKq~k~FKgs--~~~eG~lIKv~lDPSg-iY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQD------RNIRIFDIESGKQVKSFKGS--RDHEGDLIKVILDPSG-IYLATSCSDKTLCFV 668 (1080)
T ss_pred eEEEeeeCCCcceEEEEecc------cceEEEeccccceeeeeccc--ccCCCceEEEEECCCc-cEEEEeecCCceEEE
Confidence 35789999975554455443 35888999999877654321 1112445558899998 676544 34445555
Q ss_pred cCC-Cce-EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 177 GVK-GEF-LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 177 ~~~-g~~-~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
|-- |+- .+..++ .-...|+.|.+|=.=.++-.+.+.|+.+.+.
T Consensus 669 Df~sgEcvA~m~GH-----------sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 669 DFVSGECVAQMTGH-----------SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EeccchhhhhhcCc-----------chheeeeeecccchhheeecCCceEEEEECc
Confidence 532 442 222211 1235799999887334455677777655443
No 299
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.28 E-value=81 Score=31.92 Aligned_cols=122 Identities=13% Similarity=0.170 Sum_probs=74.9
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccce--eeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVL--EEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
|.-.+++-...+-++++ -.+++|..+|...+.... +. +.++..+-+...-.+.+.++.++. |.++|+..-
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l-~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgt----- 191 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL-VASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGT----- 191 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhh-hhhccccccccCCCCCccceeeeecCCc-ceEEEecCc-----
Confidence 66778884444444444 557899999988663200 00 001111101001135688998884 887776431
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~ 179 (332)
...|..||+++++.....+ +. .-....+.+++||+-.++.+..|.|-..|..
T Consensus 192 ek~lr~wDprt~~kimkLr--GH---TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLR--GH---TDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred ccceEEeccccccceeeee--cc---ccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 3458889999987654332 22 2456679999999888888888887777654
No 300
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=78.26 E-value=13 Score=35.32 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=45.9
Q ss_pred CCccceEECCCCc-EEEEeCCCCeEEEEcCC--------CceE-----------EEecCCCCC-Cccc-----ccCcccc
Q 020019 150 SCADDVTVDAEGN-AYVTDVTGSKIWKVGVK--------GEFL-----------SIISSPLFT-PKEW-----YKNLVGL 203 (332)
Q Consensus 150 ~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~--------g~~~-----------~~~~~~~~~-~p~~-----~~~~~~~ 203 (332)
..-.|+.+.=|.+ +||+.+..|.|+++|.. |+.- .++.+.... +|.. ..-..||
T Consensus 312 ~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGP 391 (476)
T KOG0918|consen 312 GLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRGGP 391 (476)
T ss_pred hhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccCCc
Confidence 4667888877765 99999999999988743 1110 111111110 1110 1124589
Q ss_pred CeEEEccCc-eEEEEeCC
Q 020019 204 NGIVYHPDG-FLIVIHTF 220 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~ 220 (332)
.-+-++-|| +|||+++.
T Consensus 392 QMlQLSLDGKRLYVt~SL 409 (476)
T KOG0918|consen 392 QMLQLSLDGKRLYVTNSL 409 (476)
T ss_pred eeEEeccCCcEEEEEchh
Confidence 999999999 99999873
No 301
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=24 Score=37.57 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=84.9
Q ss_pred cceEEcCCCCE----EEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 48 ECAKWDDSGRR----FIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 48 egia~d~~g~~----~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
+.++|..-|.. +.++..+|.|.-+++..-... .+ ..++..-. .+ ..+.|+.+++..+++..+.. .
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~---~~-~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa-----~ 137 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN---AS-EEVLATKS-KHTGPVLGLDFNPFQGNLLASGA-----D 137 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhccC---cc-hHHHhhhc-ccCCceeeeeccccCCceeeccC-----C
Confidence 45777776655 455578899988887641000 00 01221101 11 25789999998566555543 2
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC----cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCccccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG----NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYK 198 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG----~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~ 198 (332)
.+.|+.||++. ... .+. ++ ....+.+|..-..+ .|+.+-+.++++...|...+. .++..... .
T Consensus 138 ~geI~iWDlnn--~~t--P~~-~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~------~ 204 (1049)
T KOG0307|consen 138 DGEILIWDLNK--PET--PFT-PG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDT------P 204 (1049)
T ss_pred CCcEEEeccCC--cCC--CCC-CC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccC------C
Confidence 56899999975 221 111 11 12344444443332 366666666666666655441 11111100 0
Q ss_pred CccccCeEEEccCc--eEEEEeCCCC--eEEEEeCC
Q 020019 199 NLVGLNGIVYHPDG--FLIVIHTFSG--NLFKIDIV 230 (332)
Q Consensus 199 ~~~~~nGi~~~~dG--~Lyva~~~~~--~i~~id~~ 230 (332)
......+|+|+||. .|+++....+ .|...|+.
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 12346799999998 6666654333 35556655
No 302
>PRK13684 Ycf48-like protein; Provisional
Probab=77.44 E-value=62 Score=30.11 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=74.5
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEc-CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEe
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVG-VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~-~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
...++++++++|.++ .-...|.+++-. ..|+.-.....+ .....+++++.++|.+|+... .+.+++-.
T Consensus 173 g~~~~i~~~~~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~---------~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s 241 (334)
T PRK13684 173 GVVRNLRRSPDGKYV-AVSSRGNFYSTWEPGQTAWTPHQRN---------SSRRLQSMGFQPDGNLWMLAR-GGQIRFND 241 (334)
T ss_pred ceEEEEEECCCCeEE-EEeCCceEEEEcCCCCCeEEEeeCC---------CcccceeeeEcCCCCEEEEec-CCEEEEcc
Confidence 456788888887444 434457777753 334322212111 123568899999998877654 35443223
Q ss_pred CCCCCCccceeEEEEecC-CCCCCCCeEEEeCCCeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcc-cceEEEE-ECC
Q 020019 229 IVDGVGEGEEIKLIRVAG-GPLSFGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHR-LATAATV-KDG 305 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~~~g-~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~-~pt~va~-~~g 305 (332)
.+.+. .-+.+..+. ......-++++.+++++|++......+...+.| ++=+..... ..+. .-..+.+ .++
T Consensus 242 ~d~G~----sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G-~tW~~~~~~--~~~~~~~~~~~~~~~~ 314 (334)
T PRK13684 242 PDDLE----SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGG-KTWEKDPVG--EEVPSNFYKIVFLDPE 314 (334)
T ss_pred CCCCC----ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCC-CCCeECCcC--CCCCcceEEEEEeCCC
Confidence 44441 111112210 011234567788888999998765444333334 221111110 1111 1133444 788
Q ss_pred eEEEEEecC
Q 020019 306 RVYLNHMLG 314 (332)
Q Consensus 306 ~lyv~~~~g 314 (332)
+.|+....|
T Consensus 315 ~~~~~G~~G 323 (334)
T PRK13684 315 KGFVLGQRG 323 (334)
T ss_pred ceEEECCCc
Confidence 888865555
No 303
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.03 E-value=90 Score=31.79 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=66.3
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.++.++.-++ + .|++... ...|..|.. ++.... +.+. .....++++=+++ =+++.+..|.|...+
T Consensus 142 sVWAv~~l~e-~-~~vTgsa-----DKtIklWk~--~~~l~t--f~gH---tD~VRgL~vl~~~-~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 142 SVWAVASLPE-N-TYVTGSA-----DKTIKLWKG--GTLLKT--FSGH---TDCVRGLAVLDDS-HFLSCSNDGSIRLWD 206 (745)
T ss_pred heeeeeecCC-C-cEEeccC-----cceeeeccC--Cchhhh--hccc---hhheeeeEEecCC-CeEeecCCceEEEEe
Confidence 4677777776 5 4665431 233555643 444332 3221 2466778888774 477888889999999
Q ss_pred CCCceEEE-ecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEec
Q 020019 178 VKGEFLSI-ISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVA 245 (332)
Q Consensus 178 ~~g~~~~~-~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~ 245 (332)
.+|+.+.. ..+..| ...|....++.++|+....+++. |.-... -++.+.+|
T Consensus 207 ~~ge~l~~~~ghtn~-----------vYsis~~~~~~~Ivs~gEDrtlr-iW~~~e-----~~q~I~lP 258 (745)
T KOG0301|consen 207 LDGEVLLEMHGHTNF-----------VYSISMALSDGLIVSTGEDRTLR-IWKKDE-----CVQVITLP 258 (745)
T ss_pred ccCceeeeeeccceE-----------EEEEEecCCCCeEEEecCCceEE-EeecCc-----eEEEEecC
Confidence 98875543 222222 23445444556888877776553 322222 45556655
No 304
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.35 E-value=6.6 Score=22.43 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=19.9
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEE
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFL 139 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~ 139 (332)
|.+|++.. .+.++.+|.++|+..+.
T Consensus 7 ~~v~~~~~------~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGST------DGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcC------CCEEEEEEcccCcEEEE
Confidence 68888865 36799999999988764
No 305
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.18 E-value=72 Score=30.27 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=71.3
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCC--CCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHP--RNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~--~g~l~v~~~~~~~~~ 122 (332)
..+.+.+++||.++.+- ....+||.+ .++.. .+ +.. |....-.-..+++..+ ...|+++..-.+
T Consensus 188 eV~DL~FS~dgk~lasig~d~~~VW~~--~~g~~----~a---~~t-~~~k~~~~~~cRF~~d~~~~~l~laa~~~~--- 254 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGADSARVWSV--NTGAA----LA---RKT-PFSKDEMFSSCRFSVDNAQETLRLAASQFP--- 254 (398)
T ss_pred ccccceeCCCCcEEEEecCCceEEEEe--ccCch----hh---hcC-CcccchhhhhceecccCCCceEEEEEecCC---
Confidence 45689999999866433 223445544 44531 11 111 1100001223343332 236777664322
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVG 202 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~ 202 (332)
...+..+|....+.-...++...-........++|+.||++..--+..|.|..++...-....+ .+ . ....-
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~-vk-----~--aH~~~ 326 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY-VK-----E--AHLGF 326 (398)
T ss_pred CCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe-eh-----h--hheee
Confidence 2334444442211100111100011123456699999999887777788888887653211111 11 0 12234
Q ss_pred cCeEEEccCc
Q 020019 203 LNGIVYHPDG 212 (332)
Q Consensus 203 ~nGi~~~~dG 212 (332)
..+++|.||-
T Consensus 327 VT~ltF~Pds 336 (398)
T KOG0771|consen 327 VTGLTFSPDS 336 (398)
T ss_pred eeeEEEcCCc
Confidence 6799999996
No 306
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=76.06 E-value=11 Score=36.83 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 149 KSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 149 ~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
...+|.+++.+||....+-+..|.+..|+-+.+.+.-... .-+.+.-.++|+|||..+++-....-|..+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK---------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH---------hhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 3578999999999877777777877777766442211111 124567899999999666665555433333
No 307
>PLN02153 epithiospecifier protein
Probab=75.65 E-value=68 Score=29.70 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=36.0
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----------CCeEEEEc
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----------GSKIWKVG 177 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----------~~~I~~v~ 177 (332)
++||+.-+.........+.+||+++.+......+........+....++--++.|||---. -..|+++|
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 7888885421111234688999987665433223110001122222223335678885221 13577788
Q ss_pred CCC
Q 020019 178 VKG 180 (332)
Q Consensus 178 ~~g 180 (332)
++.
T Consensus 166 ~~~ 168 (341)
T PLN02153 166 IAD 168 (341)
T ss_pred CCC
Confidence 764
No 308
>PHA03098 kelch-like protein; Provisional
Probab=74.86 E-value=92 Score=30.84 Aligned_cols=116 Identities=12% Similarity=0.038 Sum_probs=58.0
Q ss_pred eEEEeCCCCeEEEEEeCcCC-CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC-----CCeEE
Q 020019 101 GLVLDHPRNRLLVVAADVFG-NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT-----GSKIW 174 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~-~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~ 174 (332)
+.++.. +.+|+..+.... .....++.||+.+++......++ .......-+++ +|.||+.-.. ...++
T Consensus 289 ~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 289 GSVVLN--NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI---YPRKNPGVTVF--NNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred eEEEEC--CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC---cccccceEEEE--CCEEEEEeCCCCCEecceEE
Confidence 444443 788887542211 12246889999887654322221 11122222222 5679885322 34677
Q ss_pred EEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC------CCeEEEEeCCCC
Q 020019 175 KVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF------SGNLFKIDIVDG 232 (332)
Q Consensus 175 ~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~------~~~i~~id~~~~ 232 (332)
++|+.... |-..+.++.|. .+ ...+. -+|.+|+.-.. .+.++++|+.+.
T Consensus 362 ~yd~~~~~--W~~~~~lp~~r-----~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 362 SWKPGESK--WREEPPLIFPR-----YN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EEcCCCCc--eeeCCCcCcCC-----cc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 88876432 21112222121 11 22232 35688886331 256889998865
No 309
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=74.50 E-value=65 Score=28.93 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEE-eCCCCeE--EEEeCCCCCCc
Q 020019 159 AEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVI-HTFSGNL--FKIDIVDGVGE 235 (332)
Q Consensus 159 ~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva-~~~~~~i--~~id~~~~~~~ 235 (332)
|+-.+.++.-..+.+.++|.+|+.+..++...+-. +.....+..+|=.++ |.++ +....+| |+||++.+
T Consensus 65 P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NN-VDLrygF~LgG~~id----iaaASdR~~~~i~~y~Idp~~~--- 136 (364)
T COG4247 65 PDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNN-VDLRYGFQLGGQSID----IAAASDRQNDKIVFYKIDPNPQ--- 136 (364)
T ss_pred cCcceEEEeeccCCeEEEecCCCeeeecCCCcccc-cccccCcccCCeEEE----EEecccccCCeEEEEEeCCCcc---
Confidence 44456666666677778888888776554332210 000111223333332 3333 2233444 78888765
Q ss_pred cceeEEEEecC----CCCCCCCeEEEeC--C-CeEEEE--eCCc-eE---EEEcCCCceEEEEEeeecCCCcccceEEEE
Q 020019 236 GEEIKLIRVAG----GPLSFGDGLELLS--P-TKLVVA--GNPS-AR---LVESSDGWETAAVVAKFSGPVHRLATAATV 302 (332)
Q Consensus 236 ~~~~~~v~~~g----~~~~~pdGi~~~~--d-G~l~va--~~~~-~~---~v~~~dg~~~~~~~~~~~~~~~~~pt~va~ 302 (332)
..+.+.-+. ...+.+.|+++-. . |..||- +.+. .. ++....|...++.++.+..+. +..++..
T Consensus 137 --~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t--QTEG~Va 212 (364)
T COG4247 137 --YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT--QTEGMVA 212 (364)
T ss_pred --ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCC--cccceee
Confidence 333332111 2345788999863 3 555555 3222 22 234455533344444433221 1122333
Q ss_pred --ECCeEEEE
Q 020019 303 --KDGRVYLN 310 (332)
Q Consensus 303 --~~g~lyv~ 310 (332)
.-|.|||.
T Consensus 213 DdEtG~LYIa 222 (364)
T COG4247 213 DDETGFLYIA 222 (364)
T ss_pred ccccceEEEe
Confidence 34889995
No 310
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=74.30 E-value=5.9 Score=21.36 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=14.9
Q ss_pred CCccceEEEeCCCCeEEEEEe
Q 020019 96 GNGSLGLVLDHPRNRLLVVAA 116 (332)
Q Consensus 96 ~~~~~gi~vd~~~g~l~v~~~ 116 (332)
++....|..|++ |+||++..
T Consensus 4 ~n~I~~i~~D~~-G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDSD-GNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-TT-SCEEEEET
T ss_pred CCeEEEEEEcCC-cCEEEEeC
Confidence 346788999996 99999863
No 311
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.30 E-value=16 Score=38.73 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=86.3
Q ss_pred ccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 47 RECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 47 pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.-|+.|.+...-++.+ ..+|+|+.||..+-+.+ + .++.. ..-+..+..+...-+++.+.. ..
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--------~--~~~~~~~~~eI~~lsWNrkvqhILAS~s-----~s 183 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--------F--TPGSQAPPSEIKCLSWNRKVSHILASGS-----PS 183 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCC--------C--CCCCCCCcccceEeccchhhhHHhhccC-----CC
Confidence 3456677765544444 66788888887653321 1 11100 012344555543223333322 24
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC--cEEEEe-C-CCCeEEEEcCC--CceEEEecCCCCCCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG--NAYVTD-V-TGSKIWKVGVK--GEFLSIISSPLFTPKEWY 197 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG--~lyvtd-~-~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~ 197 (332)
++..+||++..+.+ +.+.... +....++++.+|++ .++++. . ....|...|.. ....+.+ .
T Consensus 184 g~~~iWDlr~~~pi--i~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~----------~ 250 (1049)
T KOG0307|consen 184 GRAVIWDLRKKKPI--IKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL----------E 250 (1049)
T ss_pred CCceeccccCCCcc--cccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh----------c
Confidence 56788999866543 3442111 23558899999997 355542 2 23445444422 1111111 0
Q ss_pred cCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 198 KNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
....|.-.+.|.+.+ +|.++....++|+-.++.++
T Consensus 251 ~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 251 GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred ccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 123456678888887 88888888888888888876
No 312
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.16 E-value=14 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=16.9
Q ss_pred cceEECCCCcEEEEeCCCCeEEEEcCC
Q 020019 153 DDVTVDAEGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 153 ndiavd~dG~lyvtd~~~~~I~~v~~~ 179 (332)
..++++ +|.+|+.+. .+.|+.+|++
T Consensus 15 ~~~~v~-~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 15 SSPAVA-GGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp S--EEC-TSEEEEE-T-TSEEEEEETT
T ss_pred cCCEEE-CCEEEEEcC-CCEEEEEeCC
Confidence 345775 568999875 7899999875
No 313
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=73.53 E-value=81 Score=29.61 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=88.9
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+++-|.|+.+++...+..|-.++-+++.. ..++...++ -..-+++..| |+|+.+.. ....|.
T Consensus 197 S~V~f~P~gd~ilS~srD~tik~We~~tg~c------v~t~~~h~e----wvr~v~v~~D-Gti~As~s-----~dqtl~ 260 (406)
T KOG0295|consen 197 SSVFFLPLGDHILSCSRDNTIKAWECDTGYC------VKTFPGHSE----WVRMVRVNQD-GTIIASCS-----NDQTLR 260 (406)
T ss_pred eeEEEEecCCeeeecccccceeEEeccccee------EEeccCchH----hEEEEEecCC-eeEEEecC-----CCceEE
Confidence 4577888887666667788888888777753 123433333 4567788886 88877654 245677
Q ss_pred EEECCCCc---EEEEEecCCC----CCCCCCccceEECC--C-CcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 128 AYDLSTWN---RLFLTQLSGP----SDGKSCADDVTVDA--E-GNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 128 ~~d~~~g~---~~~~~~l~~~----~~~~~~~ndiavd~--d-G~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
+|-.++++ +.+..+.+-. ......|+---..+ + |.+.++-+..+.|-..+.. |+.+-.+..
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-------- 332 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-------- 332 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec--------
Confidence 77777662 1111111000 00011111111111 1 2355555555655555543 442221110
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
......|++|+|.|...++-.++..+..+|+.+.
T Consensus 333 --hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 333 --HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred --ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 2345679999999966667788888888888865
No 314
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.12 E-value=99 Score=30.40 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=79.3
Q ss_pred ceEEEeCCCCeEEEEEe-------CcC-CCccceEEEEECCCCcEEEEEecCCC---CC-----------------C--C
Q 020019 100 LGLVLDHPRNRLLVVAA-------DVF-GNKYSAVAAYDLSTWNRLFLTQLSGP---SD-----------------G--K 149 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~-------~~~-~~~~~~l~~~d~~~g~~~~~~~l~~~---~~-----------------~--~ 149 (332)
..+...++ |++++... ... ..-...|..+| ++|++++.+.+... .. . =
T Consensus 193 HD~~~l~n-Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 193 HDIDELPN-GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp S-EEE-TT-S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccEECCC-CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 56777775 66555543 110 01123578899 88998887765221 00 0 0
Q ss_pred CCccceEECC-CCcEEEEeCCCCeEEEEc-CCCceEEEecCCCC-CC--------c------------ccccCccccCeE
Q 020019 150 SCADDVTVDA-EGNAYVTDVTGSKIWKVG-VKGEFLSIISSPLF-TP--------K------------EWYKNLVGLNGI 206 (332)
Q Consensus 150 ~~~ndiavd~-dG~lyvtd~~~~~I~~v~-~~g~~~~~~~~~~~-~~--------p------------~~~~~~~~~nGi 206 (332)
...|.+..|+ +++|+++-.....|++++ .+++..-.+..+.. .. | ....-..+....
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~ 350 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTA 350 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEE
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccce
Confidence 4578899999 578999998899999999 45665544433211 10 1 001122345566
Q ss_pred EEccCc---eEEEEeCCCC----------------eE--EEEeCCCCCCccceeEEEEecCCC-----C-CCCCeEEEeC
Q 020019 207 VYHPDG---FLIVIHTFSG----------------NL--FKIDIVDGVGEGEEIKLIRVAGGP-----L-SFGDGLELLS 259 (332)
Q Consensus 207 ~~~~dG---~Lyva~~~~~----------------~i--~~id~~~~~~~~~~~~~v~~~g~~-----~-~~pdGi~~~~ 259 (332)
.+-++| .|.+=|-+.+ |+ |+||.... .++.+..-+.+ . +.-.++..-+
T Consensus 351 ~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~-----T~~~vw~y~~~~g~~~yS~~~s~aq~l~ 425 (477)
T PF05935_consen 351 HLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKM-----TVEQVWEYGKPRGNEFYSPIVSSAQYLP 425 (477)
T ss_dssp EE-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTT-----EEEEEEEESGGGGGGG--SS--EEEEET
T ss_pred EEcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCc-----eEEEEEEeCCCCCCCccCCcceeeEEec
Confidence 777777 7777665422 33 56776655 23333211111 2 2345666667
Q ss_pred C-CeEEEEe
Q 020019 260 P-TKLVVAG 267 (332)
Q Consensus 260 d-G~l~va~ 267 (332)
+ |++++..
T Consensus 426 n~gn~li~~ 434 (477)
T PF05935_consen 426 NKGNTLITS 434 (477)
T ss_dssp TTTEEEEEE
T ss_pred CCCCEEEEe
Confidence 7 8877774
No 315
>KOG4328 consensus WD40 protein [Function unknown]
Probab=72.54 E-value=96 Score=30.01 Aligned_cols=213 Identities=14% Similarity=0.079 Sum_probs=109.9
Q ss_pred eEEEecCCccccceEEcCCC-CEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEE
Q 020019 37 VYHYHSSSFFRECAKWDDSG-RRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVA 115 (332)
Q Consensus 37 ~i~~~~~~~~pegia~d~~g-~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~ 115 (332)
++-+........++.+.|.. +.+|++..+|.|.-.|..+..+ + ++..- ......-.++-+..++..+++++
T Consensus 227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~-----e--~v~s~-~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS-----E--EVLSL-DTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh-----H--HHhhc-CccceeeeeccccCCCccEEEee
Confidence 34444444344567777764 3455666678888887765542 2 23221 00111334555555556666666
Q ss_pred eCcCCCccceEEEEECCCCcE-EEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcC---CCceEEEecCCC
Q 020019 116 ADVFGNKYSAVAAYDLSTWNR-LFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGV---KGEFLSIISSPL 190 (332)
Q Consensus 116 ~~~~~~~~~~l~~~d~~~g~~-~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~---~g~~~~~~~~~~ 190 (332)
. .+.+-+||.+++.- ...+.+ .. ..-+.+++.|-.. ++.|.+..+..-..|. .+|...++. .
T Consensus 299 ~------~G~f~~iD~R~~~s~~~~~~l---h~--kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls--t 365 (498)
T KOG4328|consen 299 N------VGNFNVIDLRTDGSEYENLRL---HK--KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS--T 365 (498)
T ss_pred c------ccceEEEEeecCCccchhhhh---hh--cccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee--c
Confidence 4 34566788877543 222333 11 2667899999864 5556554443323332 234321111 1
Q ss_pred CCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC--CCCCccceeEEEEecCCC--CCCCCeEEEeCCCeEEE
Q 020019 191 FTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV--DGVGEGEEIKLIRVAGGP--LSFGDGLELLSPTKLVV 265 (332)
Q Consensus 191 ~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~--~~~~~~~~~~~v~~~g~~--~~~pdGi~~~~dG~l~v 265 (332)
+ +.....+...|+|+| + .++.-..++|..+|.. +.+. .....|..+... --.|--.+.+|+-++++
T Consensus 366 ~------~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~--~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 366 L------PHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKD--EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV 436 (498)
T ss_pred c------cccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccC--CccceeeccCcccccccchhheeCCCccEEE
Confidence 1 112345788999998 8 4555566778777763 1111 133334433111 12355667888877666
Q ss_pred EeCC-ceEEEEcCCC
Q 020019 266 AGNP-SARLVESSDG 279 (332)
Q Consensus 266 a~~~-~~~~v~~~dg 279 (332)
..+- ...=++.+.|
T Consensus 437 vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNG 451 (498)
T ss_pred EeccCcceeEEcCCC
Confidence 6543 2222344544
No 316
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=72.27 E-value=10 Score=35.36 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=32.5
Q ss_pred ccceEEEEECCC-CcEEEEEecCCCCCCCCCccceEECCCC---cEEEEeCCCCeEEEEcCCC
Q 020019 122 KYSAVAAYDLST-WNRLFLTQLSGPSDGKSCADDVTVDAEG---NAYVTDVTGSKIWKVGVKG 180 (332)
Q Consensus 122 ~~~~l~~~d~~~-g~~~~~~~l~~~~~~~~~~ndiavd~dG---~lyvtd~~~~~I~~v~~~g 180 (332)
....|+++|+++ |++...+..+....+...|.-+-.|.|| .+|+.|. .|.|||+|..+
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~ 240 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSS 240 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET-TSEEEEEE--T
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC-CCcEEEEECCC
Confidence 346799999999 9988777663221112233222234556 3788886 59999999764
No 317
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.09 E-value=1.2e+02 Score=30.75 Aligned_cols=211 Identities=18% Similarity=0.123 Sum_probs=104.7
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc-CCCccceEEEEECCCCcEEEEEecCC
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV-FGNKYSAVAAYDLSTWNRLFLTQLSG 144 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~-~~~~~~~l~~~d~~~g~~~~~~~l~~ 144 (332)
..+-.+|+.++.+. .....| ....-.|+++-. |.||++.+.. +......+.+||+.+++......+..
T Consensus 301 ~~ve~yd~~~~~w~-------~~a~m~--~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~ 369 (571)
T KOG4441|consen 301 RSVECYDPKTNEWS-------SLAPMP--SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT 369 (571)
T ss_pred ceeEEecCCcCcEe-------ecCCCC--cccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccC
Confidence 35777887765431 121112 123456777775 7999997644 22344678999999877433222211
Q ss_pred CCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeC
Q 020019 145 PSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHT 219 (332)
Q Consensus 145 ~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~ 219 (332)
...--++++- +|.||+.--. ...|-++|+....=... ..+.. ...-.|++.- +|.||+.-.
T Consensus 370 ----~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v--a~m~~------~r~~~gv~~~-~g~iYi~GG 435 (571)
T KOG4441|consen 370 ----KRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV--APMLT------RRSGHGVAVL-GGKLYIIGG 435 (571)
T ss_pred ----ccccceeEEE-CCEEEEEeccccccccccEEEecCCCCccccc--CCCCc------ceeeeEEEEE-CCEEEEEcC
Confidence 1122223332 5779986433 24578888874311111 11111 1122345443 689999865
Q ss_pred CC------CeEEEEeCCCCCCccceeEEEEecCCCCC---CCCeEEEeCCCeEEEEeCCc----eEEEEcCCCceEEEEE
Q 020019 220 FS------GNLFKIDIVDGVGEGEEIKLIRVAGGPLS---FGDGLELLSPTKLVVAGNPS----ARLVESSDGWETAAVV 286 (332)
Q Consensus 220 ~~------~~i~~id~~~~~~~~~~~~~v~~~g~~~~---~pdGi~~~~dG~l~va~~~~----~~~v~~~dg~~~~~~~ 286 (332)
.. +.+.++|+.+.+ =+.+. ++. .--|+++- ++.||+.+... ...+..-|- ++-++.
T Consensus 436 ~~~~~~~l~sve~YDP~t~~-----W~~~~----~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp-~~~~W~ 504 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNT-----WTLIA----PMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDP-ETNQWT 504 (571)
T ss_pred cCCCccccceEEEEcCCCCc-----eeecC----CcccccccceEEEE-CCEEEEECCccCCCccceEEEEcC-CCCcee
Confidence 21 456788888652 11111 221 22356555 57999997432 111211111 111222
Q ss_pred eeecCCCcccceEEEEECCeEEEEEe
Q 020019 287 AKFSGPVHRLATAATVKDGRVYLNHM 312 (332)
Q Consensus 287 ~~~~~~~~~~pt~va~~~g~lyv~~~ 312 (332)
..-.....+...+++..+++||+...
T Consensus 505 ~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EcccCccccccccEEEECCEEEEEec
Confidence 11111112233456778999998544
No 318
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=71.82 E-value=92 Score=29.47 Aligned_cols=169 Identities=9% Similarity=0.070 Sum_probs=92.5
Q ss_pred eeEEEecCCccccceEEcCC--CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCC-CccceEEEeCCCCeEE
Q 020019 36 HVYHYHSSSFFRECAKWDDS--GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTG-NGSLGLVLDHPRNRLL 112 (332)
Q Consensus 36 ~~i~~~~~~~~pegia~d~~--g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gi~vd~~~g~l~ 112 (332)
..+.+.+.+..-.++.|+|. |+++-++. .+.|+.+.+.++.+ .+-..|-..+ .++-+|.-.|....++
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc-~~~I~lw~~~~g~W--------~vd~~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDC-VKGIHLWEPSTGSW--------KVDQRPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred ceEEecccCccceeeecccccccccccCcc-ccceEeeeeccCce--------eecCccccccccchhhhccCCccCceE
Confidence 34556555545567788883 44332222 25677777777765 1222233222 3678899888766666
Q ss_pred EEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC----CceEEEecC
Q 020019 113 VVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK----GEFLSIISS 188 (332)
Q Consensus 113 v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~----g~~~~~~~~ 188 (332)
.+..- .+.|.+||.+++......-... . .+-.|-|....+-.+..+-...|.+...|.. ++....
T Consensus 274 aScS~-----DgsIrIWDiRs~~~~~~~~~kA-h--~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~--- 342 (440)
T KOG0302|consen 274 ASCSC-----DGSIRIWDIRSGPKKAAVSTKA-H--NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT--- 342 (440)
T ss_pred Eeeec-----CceEEEEEecCCCccceeEeec-c--CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee---
Confidence 66531 3568899998874332222110 0 1234445555553355554445554444432 221111
Q ss_pred CCCCCcccccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 189 PLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 189 ~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
|+ ........|.|+|.. ..+.+-...++|..+|+..
T Consensus 343 --fk-----~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 343 --FK-----YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred --EE-----eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 11 011234789999987 7777777888887777763
No 319
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=71.75 E-value=27 Score=29.49 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=49.3
Q ss_pred cCeEEEccCc--eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCceEEEEcCC
Q 020019 203 LNGIVYHPDG--FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPSARLVESSD 278 (332)
Q Consensus 203 ~nGi~~~~dG--~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~~~~v~~~d 278 (332)
..|--|-.+| ++||.-..+--|+|+....+ ........|.++..+.++-+|.+|+||.......-++...|
T Consensus 64 ~~G~WfFQNGPQRVYV~Le~tP~v~Rl~~~~~-----~~~l~thTg~~~~~~~~~~lDe~G~l~l~t~~g~glvhd~D 136 (187)
T PF11161_consen 64 EDGRWFFQNGPQRVYVELEYTPWVWRLQPEGG-----DLGLVTHTGAPFEAPRACWLDEQGRLYLATPLGVGLVHDRD 136 (187)
T ss_pred CCccEEEecCCEEEEEEeccCceEEEeccCCC-----CCceeecCCCcccchhheeECCCCCEEEecCCceEEEecCc
Confidence 3577777888 89998888888899987533 12222233455666889999999999999766555554433
No 320
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.58 E-value=96 Score=29.62 Aligned_cols=144 Identities=14% Similarity=0.080 Sum_probs=83.0
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..|... ...++++-.+.+|.-||..+... ...-|. +.....+.+..++..|..+.. ...+-
T Consensus 306 nDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~---------~~sv~~--gg~vtSl~ls~~g~~lLsssR------Ddtl~ 366 (459)
T KOG0288|consen 306 NDIVCS--ISDVISGHFDKKVRFWDIRSADK---------TRSVPL--GGRVTSLDLSMDGLELLSSSR------DDTLK 366 (459)
T ss_pred cceEec--ceeeeecccccceEEEeccCCce---------eeEeec--CcceeeEeeccCCeEEeeecC------CCcee
Confidence 444443 23344444467788888554432 111111 123455666665344555532 34577
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGI 206 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi 206 (332)
++|+++.+....+.-.+ ....+--+-+.+.|+|....+-+.+|.||..+.. ||....+..+.. ..+.+.+
T Consensus 367 viDlRt~eI~~~~sA~g-~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s--------~~aI~s~ 437 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEG-FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS--------NAAITSL 437 (459)
T ss_pred eeecccccEEEEeeccc-cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC--------CcceEEE
Confidence 88998766655443321 1123446779999999877788889999998876 555444332211 1246788
Q ss_pred EEccCc-eEEEEeC
Q 020019 207 VYHPDG-FLIVIHT 219 (332)
Q Consensus 207 ~~~~dG-~Lyva~~ 219 (332)
+|++-| .|.-++.
T Consensus 438 ~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 438 SWNPSGSGLLSADK 451 (459)
T ss_pred EEcCCCchhhcccC
Confidence 999988 6655443
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=71.17 E-value=18 Score=21.14 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=26.7
Q ss_pred EEecCCccccceEEcCCCCEEEEEecCCeEEEEE
Q 020019 39 HYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVA 72 (332)
Q Consensus 39 ~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd 72 (332)
.+.+.......+++.++++.+++...++.|..+|
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4455555778999999999888888788888765
No 322
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=70.69 E-value=16 Score=33.90 Aligned_cols=145 Identities=19% Similarity=0.189 Sum_probs=80.6
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
++..+.+| .++.|... ..+.+.+||.++|+.....-- . ....-++.+. +| +.||.+....|.+.+
T Consensus 239 SVLCLqyd---~rviisGS-----SDsTvrvWDv~tge~l~tlih--H---ceaVLhlrf~-ng-~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 239 SVLCLQYD---ERVIVSGS-----SDSTVRVWDVNTGEPLNTLIH--H---CEAVLHLRFS-NG-YMVTCSKDRSIAVWD 303 (499)
T ss_pred cEEeeecc---ceEEEecC-----CCceEEEEeccCCchhhHHhh--h---cceeEEEEEe-CC-EEEEecCCceeEEEe
Confidence 45555555 56676643 245788999999987543211 0 1222345554 33 777877766555555
Q ss_pred CCCce---E-EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCC
Q 020019 178 VKGEF---L-SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGD 253 (332)
Q Consensus 178 ~~g~~---~-~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pd 253 (332)
.+... . +++. ......|-+.|+ ..++|+.++..+|-.++..+. +.+..+.. .-.
T Consensus 304 m~sps~it~rrVLv----------GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~----efvRtl~g------HkR 361 (499)
T KOG0281|consen 304 MASPTDITLRRVLV----------GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC----EFVRTLNG------HKR 361 (499)
T ss_pred ccCchHHHHHHHHh----------hhhhheeeeccc--cceEEEecCCceEEEEeccce----eeehhhhc------ccc
Confidence 43211 1 1110 022345777775 347788888888877777776 23443332 124
Q ss_pred eEEEeC-CCeEEEEeCC--ceEEEEcCCC
Q 020019 254 GLELLS-PTKLVVAGNP--SARLVESSDG 279 (332)
Q Consensus 254 Gi~~~~-dG~l~va~~~--~~~~v~~~dg 279 (332)
|||.-. .|++.|++.. .+++-....|
T Consensus 362 GIAClQYr~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 362 GIACLQYRDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred cceehhccCeEEEecCCCceEEEEecccc
Confidence 777764 4889998743 3444444444
No 323
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=70.55 E-value=12 Score=22.35 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=19.2
Q ss_pred CCcEEEEeC-----CCCeEEEEcCCCceEE
Q 020019 160 EGNAYVTDV-----TGSKIWKVGVKGEFLS 184 (332)
Q Consensus 160 dG~lyvtd~-----~~~~I~~v~~~g~~~~ 184 (332)
||++|.+-+ ..|.|+|++++|....
T Consensus 1 dg~lYGTT~~GG~~~~GTvf~~~~~g~~t~ 30 (34)
T TIGR03803 1 GGTLYGTTSGGGASGFGTLYRLSTAGGTTV 30 (34)
T ss_pred CCcEEEEcccCCCCCceeEEEEcCCCCeEE
Confidence 478888765 3578999999988744
No 324
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.23 E-value=53 Score=31.35 Aligned_cols=56 Identities=21% Similarity=0.491 Sum_probs=36.9
Q ss_pred EEEeCCCCeEEEEcCCCceEEEecCC-CCC---CcccccCccccCeEEEccCc-eEEEEeC
Q 020019 164 YVTDVTGSKIWKVGVKGEFLSIISSP-LFT---PKEWYKNLVGLNGIVYHPDG-FLIVIHT 219 (332)
Q Consensus 164 yvtd~~~~~I~~v~~~g~~~~~~~~~-~~~---~p~~~~~~~~~nGi~~~~dG-~Lyva~~ 219 (332)
|+.|....-|++++.+|+....+..+ .+. .|.-...-.+--|+++++|| +||-.-.
T Consensus 159 ~igdefgP~l~~f~~~Gk~~~~~~~~~~~~~~~~p~g~~~n~gfEglait~d~~~L~~~le 219 (391)
T COG4222 159 WIGDEFGPYLLEFDANGKLVRVLEVPVRFLPPDNPKGLRNNLGFEGLAITPDGKKLYALLE 219 (391)
T ss_pred ccccccCcceEEECCCCccccccccccccCcCCCccccccccceeeEEecCCCceEEEEEe
Confidence 88888899999999999876543211 111 11112223466799999999 9986543
No 325
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.67 E-value=1.2e+02 Score=29.91 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=88.6
Q ss_pred ccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 45 FFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 45 ~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
...-|+.|.+|++.+.+.-.++.+..+|...... .. .+...- ..+..|+..|-...|.+..++. ...
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p----~~--~~~~H~----aAVKA~awcP~q~~lLAsGGGs---~D~ 368 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP----KF--TFTEHT----AAVKALAWCPWQSGLLATGGGS---ADR 368 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCCccc----cE--EEeccc----eeeeEeeeCCCccCceEEcCCC---ccc
Confidence 3556899999998766667788999998743331 11 232211 2567888888766666654332 356
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeC-CCC--eEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDV-TGS--KIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~-~~~--~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
.|..||..+|+.+..+.- .+..-.++..+..+ +..+.- ..+ .||++..--+...+..+ .
T Consensus 369 ~i~fwn~~~g~~i~~vdt------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-----------~ 431 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDT------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-----------T 431 (484)
T ss_pred EEEEEEcCCCcEeccccc------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-----------c
Confidence 788899998887654432 23444588888764 555432 233 45665432111111111 1
Q ss_pred cccCeEEEccCc-eEEEEeCCCC-eEEEEe
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSG-NLFKID 228 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~-~i~~id 228 (332)
...--++++||| ++.++..+.. ++|.+.
T Consensus 432 ~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 123467899999 6666654432 344443
No 326
>KOG4328 consensus WD40 protein [Function unknown]
Probab=69.54 E-value=1.1e+02 Score=29.57 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=68.7
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECC---CCCCCccceeeeEEecccCcCCC--ccceEEEeCCCCeEEEEEeCcCC
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVP---DDYPPGTVLEEVTLVKDLELTGN--GSLGLVLDHPRNRLLVVAADVFG 120 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~gi~vd~~~g~l~v~~~~~~~ 120 (332)
-.....++|.|..+++...+.+|..+|.. ..-. ....+.++...++ .+.--+.||+ -.++++...
T Consensus 371 sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~------p~~~I~Hn~~t~RwlT~fKA~W~P~-~~li~vg~~--- 440 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE------PLGTIPHNNRTGRWLTPFKAAWDPD-YNLIVVGRY--- 440 (498)
T ss_pred eeeeeEEcCCCCceEeeccCCceEEeecccccccCC------ccceeeccCcccccccchhheeCCC-ccEEEEecc---
Confidence 44567789987777777778899999863 1211 1122323332222 3555678886 443433321
Q ss_pred CccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEE-EeCCCCeEEEEcCCC
Q 020019 121 NKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYV-TDVTGSKIWKVGVKG 180 (332)
Q Consensus 121 ~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyv-td~~~~~I~~v~~~g 180 (332)
...|-+||.+.++.+. ++..|.. ...|-=+.++|-+..++ .-...|.||.+..++
T Consensus 441 --~r~IDv~~~~~~q~v~--el~~P~~-~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 441 --PRPIDVFDGNGGQMVC--ELHDPES-STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred --CcceeEEcCCCCEEee--eccCccc-cccccceeecccccceeccCCccceEEEEecCC
Confidence 2357889998877543 3322221 23444567788776444 444578888887654
No 327
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=69.51 E-value=7.5 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=22.5
Q ss_pred ccceEECCCCcEEEEeCC-------CCeEEEEcCCCce
Q 020019 152 ADDVTVDAEGNAYVTDVT-------GSKIWKVGVKGEF 182 (332)
Q Consensus 152 ~ndiavd~dG~lyvtd~~-------~~~I~~v~~~g~~ 182 (332)
..++++.+||+|+++-+. ...|.|++++|.+
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 356899999998886432 2358888888874
No 328
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=69.43 E-value=35 Score=31.67 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCeEEEEEeCcCCCccceEEEEECCCCcEEEEEec-----CCCCCCCCCccceEECCCCc--EEEEeCCCCeEEEEcCCC
Q 020019 108 RNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQL-----SGPSDGKSCADDVTVDAEGN--AYVTDVTGSKIWKVGVKG 180 (332)
Q Consensus 108 ~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l-----~~~~~~~~~~ndiavd~dG~--lyvtd~~~~~I~~v~~~g 180 (332)
+|++|++.-.+.....-+|+.|...+-+++....+ ++.+....---.+.+|.+|+ +||.|...-.|.|++..+
T Consensus 193 nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn 272 (442)
T PF15416_consen 193 NGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSN 272 (442)
T ss_pred CCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccC
No 329
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=68.94 E-value=94 Score=28.47 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=118.4
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
-++.+.++++.+|+...+.+|+.+|..+++.. +.+..+. ...+.+.... +|-..|+... ..+.+.
T Consensus 94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~------rk~k~h~----~~vNs~~p~r-rg~~lv~Sgs----dD~t~k 158 (338)
T KOG0265|consen 94 MELHGMRDGSHILSCGTDKTVRGWDAETGKRI------RKHKGHT----SFVNSLDPSR-RGPQLVCSGS----DDGTLK 158 (338)
T ss_pred EeeeeccCCCEEEEecCCceEEEEecccceee------ehhcccc----ceeeecCccc-cCCeEEEecC----CCceEE
Confidence 35677888888888777888999998877631 1222111 2345555433 3666666653 245688
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC---CCceEEEecCCCCCCcccccCccccC
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV---KGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~---~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.||.++.+....++- ..-...+.+..++.=.++---++.|-..|+ ++... +.. ......
T Consensus 159 l~D~R~k~~~~t~~~------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~--lsG----------h~DtIt 220 (338)
T KOG0265|consen 159 LWDIRKKEAIKTFEN------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT--LSG----------HADTIT 220 (338)
T ss_pred EEeecccchhhcccc------ceeEEEEEecccccceeeccccCceeeeccccCcceEE--eec----------ccCcee
Confidence 899886443322210 111233666656654555445566666776 33322 110 112357
Q ss_pred eEEEccCceEEEEeCCCCeEEEEeCCCCCCccce-eEEEEec--C--CC-C-----CCCCeEEEe-CCCeEEEEeCCceE
Q 020019 205 GIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEE-IKLIRVA--G--GP-L-----SFGDGLELL-SPTKLVVAGNPSAR 272 (332)
Q Consensus 205 Gi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~-~~~v~~~--g--~~-~-----~~pdGi~~~-~dG~l~va~~~~~~ 272 (332)
||.++++|.-..++.-.+.+-++|...-.. +++ ++.+... + .. + +.-.++... .|-.+||-+....+
T Consensus 221 ~lsls~~gs~llsnsMd~tvrvwd~rp~~p-~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 221 GLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred eEEeccCCCccccccccceEEEEEecccCC-CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc
Confidence 999999996667788888887777652110 112 3322211 0 00 1 122344443 45567777755444
Q ss_pred EEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEEEE
Q 020019 273 LVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVYLN 310 (332)
Q Consensus 273 ~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~lyv~ 310 (332)
++..-.| ..+.+...---|. .|-=+.. .+.+||..
T Consensus 300 ~lyklpG-h~gsvn~~~Fhp~--e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 300 ILYKLPG-HYGSVNEVDFHPT--EPIILSCSSDKTIYLG 335 (338)
T ss_pred EEEEcCC-cceeEEEeeecCC--CcEEEEeccCceeEee
Confidence 4444445 4445544211121 1222222 67888864
No 330
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=67.92 E-value=1.1e+02 Score=28.63 Aligned_cols=138 Identities=14% Similarity=0.235 Sum_probs=73.8
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEE
Q 020019 50 AKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAY 129 (332)
Q Consensus 50 ia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~ 129 (332)
..++++|+ |+.+...-++..-|..+-+ +.+ +..- . ....-|....+ .-..+|... +...+.+|
T Consensus 14 c~fSp~g~-yiAs~~~yrlviRd~~tlq----~~q---lf~c--l--dki~yieW~ad-s~~ilC~~y----k~~~vqvw 76 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLSRYRLVIRDSETLQ----LHQ---LFLC--L--DKIVYIEWKAD-SCHILCVAY----KDPKVQVW 76 (447)
T ss_pred eeECCCCC-eeeeeeeeEEEEeccchhh----HHH---HHHH--H--HHhhheeeecc-ceeeeeeee----ccceEEEE
Confidence 46888887 6666433466555543322 111 1100 0 02233444443 222333322 34578888
Q ss_pred ECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEE
Q 020019 130 DLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVY 208 (332)
Q Consensus 130 d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~ 208 (332)
++. +..+...+. .+......+...|||+ |..+....-+|-+.....+....+..+. .+..|++|
T Consensus 77 sl~--Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK----------~~~kg~~f 141 (447)
T KOG4497|consen 77 SLV--QPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK----------TNVKGYAF 141 (447)
T ss_pred Eee--cceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc----------cCceeEEE
Confidence 886 344444442 2345566788999995 7777666666655555444333332221 34579999
Q ss_pred ccCc-eEEEEeC
Q 020019 209 HPDG-FLIVIHT 219 (332)
Q Consensus 209 ~~dG-~Lyva~~ 219 (332)
++|| ..-+...
T Consensus 142 ~~dg~f~ai~sR 153 (447)
T KOG4497|consen 142 HPDGQFCAILSR 153 (447)
T ss_pred CCCCceeeeeec
Confidence 9999 5555443
No 331
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=67.41 E-value=1e+02 Score=28.41 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=38.7
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCCCeEEEEEeCcCC------Cccce
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPRNRLLVVAADVFG------NKYSA 125 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~g~l~v~~~~~~~------~~~~~ 125 (332)
++++|+.. .....++++|.+... . .|...+.++ ...-.++++- +++|||..+.... .....
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~------~--~W~~l~~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~ 86 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPS------K--GWQKIADFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDD 86 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCC------C--CceECCCCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceeccc
Confidence 45677755 434678888864221 0 233222322 1222345544 2789998653110 01346
Q ss_pred EEEEECCCCcEE
Q 020019 126 VAAYDLSTWNRL 137 (332)
Q Consensus 126 l~~~d~~~g~~~ 137 (332)
+.+||+.+++..
T Consensus 87 v~~Yd~~~~~W~ 98 (346)
T TIGR03547 87 VYRYDPKKNSWQ 98 (346)
T ss_pred EEEEECCCCEEe
Confidence 889999876643
No 332
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=66.22 E-value=1.1e+02 Score=30.34 Aligned_cols=101 Identities=15% Similarity=0.252 Sum_probs=55.3
Q ss_pred cceEEcCCCCEEEEE--ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCcc-ceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 48 ECAKWDDSGRRFIVS--FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGS-LGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 48 egia~d~~g~~~~~~--~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
+.+.|.++|+-|.+. .--..+..+++. +. .+.+.|+ +| +.+.++|. |++.+..+ .+ +-.+
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~---------~v~df~e----gpRN~~~fnp~-g~ii~lAG-FG-NL~G 336 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLR-GK---------PVFDFPE----GPRNTAFFNPH-GNIILLAG-FG-NLPG 336 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCC-CC---------EeEeCCC----CCccceEECCC-CCEEEEee-cC-CCCC
Confidence 456666666655433 223455555554 22 1221122 33 67888886 77554443 22 1245
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCe
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSK 172 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~ 172 (332)
.+-+||..+-+.+..... ....=+...|||..++|.+...+
T Consensus 337 ~mEvwDv~n~K~i~~~~a-------~~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKA-------ANTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred ceEEEeccchhhcccccc-------CCceEEEEcCCCcEEEEEecccc
Confidence 688899877444332221 23334788899988877765544
No 333
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=65.03 E-value=37 Score=33.95 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=66.4
Q ss_pred cccceEEcCCCCEEEEEec---CCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCc
Q 020019 46 FRECAKWDDSGRRFIVSFL---DGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNK 122 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~---~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~ 122 (332)
....+.|+.+|+.+.+... +.+|+..+...... + ..|. .....++...++|..-.|+|+..
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s-----Q-~PF~----kskG~vq~v~FHPs~p~lfVaTq------ 586 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS-----Q-SPFR----KSKGLVQRVKFHPSKPYLFVATQ------ 586 (733)
T ss_pred ccceeeeecCCceEEEeccCCCcceEEEEecccccc-----c-Cchh----hcCCceeEEEecCCCceEEEEec------
Confidence 3356899999985544432 23566666543331 1 0111 12236788999998788999975
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~ 179 (332)
..|.+||+..++++... + .+..-...|++++.| ||++.. ..+++.-+|.+
T Consensus 587 -~~vRiYdL~kqelvKkL-~----tg~kwiS~msihp~GDnli~gs-~d~k~~WfDld 637 (733)
T KOG0650|consen 587 -RSVRIYDLSKQELVKKL-L----TGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLD 637 (733)
T ss_pred -cceEEEehhHHHHHHHH-h----cCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcc
Confidence 24778998765432211 1 112334569999998 466654 45666666665
No 334
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=64.58 E-value=1.3e+02 Score=28.39 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=37.9
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcC--CCccceEEEeCCCCeEEEEEeCcC-C-----Cccce
Q 020019 55 SGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELT--GNGSLGLVLDHPRNRLLVVAADVF-G-----NKYSA 125 (332)
Q Consensus 55 ~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gi~vd~~~g~l~v~~~~~~-~-----~~~~~ 125 (332)
++++|+.. .....++++|.+..+. .|..-+.++ ...-.+++.- ++.|||..+... . .....
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~--------~W~~l~~~p~~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSK--------GWTKIAAFPGGPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCC--------CeEECCcCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCceeEccc
Confidence 56777755 4445688998753210 132212221 1222234433 278999864321 0 01246
Q ss_pred EEEEECCCCcEE
Q 020019 126 VAAYDLSTWNRL 137 (332)
Q Consensus 126 l~~~d~~~g~~~ 137 (332)
+++||+.+.+..
T Consensus 108 v~~YD~~~n~W~ 119 (376)
T PRK14131 108 VYKYDPKTNSWQ 119 (376)
T ss_pred EEEEeCCCCEEE
Confidence 889999876543
No 335
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=64.36 E-value=1.3e+02 Score=28.47 Aligned_cols=113 Identities=15% Similarity=0.058 Sum_probs=59.2
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
.+..+...++++++.+.....+.+.++...... ...+...-. ....+..+.+..+.-.+.|++. .+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~------~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dk------agD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK------GAKLLDVSC-VPKRPTAISFIREDTSVLVADK------AGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC------cceeeeEee-cccCcceeeeeeccceEEEEee------cCC
Confidence 556677888888777664445554444332210 001221100 1135667776665455666654 233
Q ss_pred EEEEECCC---CcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 126 VAAYDLST---WNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 126 l~~~d~~~---g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
++.||.-. +... .+ -.-.+...|+++.+|+...+|.-....|+...
T Consensus 131 ~~~~di~s~~~~~~~---~~---lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ 179 (390)
T KOG3914|consen 131 VYSFDILSADSGRCE---PI---LGHVSMLLDVAVSPDDQFIITADRDEKIRVSR 179 (390)
T ss_pred ceeeeeecccccCcc---hh---hhhhhhhheeeecCCCCEEEEecCCceEEEEe
Confidence 44444322 2111 11 01137889999999998777655555555443
No 336
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=63.22 E-value=1.3e+02 Score=28.55 Aligned_cols=114 Identities=8% Similarity=-0.012 Sum_probs=63.9
Q ss_pred ccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceE
Q 020019 47 RECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAV 126 (332)
Q Consensus 47 pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l 126 (332)
..+++++...+.+|+.-..++|.+.|..+.+. ..+...-. ....+++|-++|. ++.+++..+ .+.+
T Consensus 108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs-------i~V~~~~~-~~~~VY~m~~~P~-DN~~~~~t~-----~~~V 173 (609)
T KOG4227|consen 108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQS-------IYVANENN-NRGDVYHMDQHPT-DNTLIVVTR-----AKLV 173 (609)
T ss_pred eEEEEEccCCeeEecCCCcceeEeeeccccee-------eeeecccC-cccceeecccCCC-CceEEEEec-----CceE
Confidence 34788988777667666779999999876652 12222111 1125789999997 444555443 4567
Q ss_pred EEEECCCCc-EEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEc
Q 020019 127 AAYDLSTWN-RLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVG 177 (332)
Q Consensus 127 ~~~d~~~g~-~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~ 177 (332)
..||.+.-+ ....+-+ +.......-+.+.|.- .|+.+.+..+.+-.+|
T Consensus 174 ~~~D~Rd~~~~~~~~~~---AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVLP---ANSGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred EEEeccCCCCCCceeee---cCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence 788875432 1111111 1112334456677763 5666665555444444
No 337
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.76 E-value=94 Score=30.84 Aligned_cols=125 Identities=11% Similarity=0.206 Sum_probs=68.3
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC--CcEEEEeC-----CCCeEEEEcCC--Cc-eEEEecCCCCC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE--GNAYVTDV-----TGSKIWKVGVK--GE-FLSIISSPLFT 192 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d--G~lyvtd~-----~~~~I~~v~~~--g~-~~~~~~~~~~~ 192 (332)
..+|+..|.+.|+.+..+.+. .. ... +.+.|+ +.-..+.. .++.|+|+||. |+ .+.+.....+.
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~---~d-i~m--v~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFE---DD-INM--VDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred cCcceeeecccceeeeEeecc---CC-cce--eeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 457999999999988777763 11 111 222222 21111111 25889999986 55 23333333332
Q ss_pred CcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEe
Q 020019 193 PKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAG 267 (332)
Q Consensus 193 ~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~ 267 (332)
....-+.++-..+|++.|+. ..|.|.-++-. +.- ....++.-| ...-++.+..||+.+++.
T Consensus 429 ------~k~nFsc~aTT~sG~IvvgS-~~GdIRLYdri-~~~---AKTAlPgLG---~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 429 ------TKNNFSCFATTESGYIVVGS-LKGDIRLYDRI-GRR---AKTALPGLG---DAIKHVDVTADGKWILAT 489 (644)
T ss_pred ------cccccceeeecCCceEEEee-cCCcEEeehhh-hhh---hhhcccccC---CceeeEEeeccCcEEEEe
Confidence 12334677777888888764 46667656543 210 111122112 223567788888877775
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=62.70 E-value=49 Score=32.83 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=51.4
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+...+.+++..++.++..| +.|..||...+. ...... .-.|+.++..|+|.+++.-+..|.|..+|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~D------gSiiLyD~~~~~-t~~~ka------~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCED------GSIILYDTTRGV-TLLAKA------EFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecC------CeEEEEEcCCCe-eeeeee------cccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 45667778876777777764 568899987643 222222 25688999999999999988999999998
Q ss_pred CC
Q 020019 178 VK 179 (332)
Q Consensus 178 ~~ 179 (332)
..
T Consensus 328 ~A 329 (545)
T PF11768_consen 328 MA 329 (545)
T ss_pred ee
Confidence 65
No 339
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=62.55 E-value=2e+02 Score=29.89 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=86.7
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
-...+.+.|+ |++.++.-= .+.+.+|-+++ +..+..+-+.. --.-.|-+.+|+++.+|.+....|-...
T Consensus 510 dvL~v~~Spd-gk~LaVsLL-----dnTVkVyflDt--lKFflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 510 DVLCVSVSPD-GKLLAVSLL-----DNTVKVYFLDT--LKFFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred cEEEEEEcCC-CcEEEEEec-----cCeEEEEEecc--eeeeeeecccc---cceeEEeccCCcCeEEeccCCCceEEec
Confidence 4678899997 886655431 24566666665 33344443211 1223477788899999987655433333
Q ss_pred CC-Cc-eEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE
Q 020019 178 VK-GE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL 255 (332)
Q Consensus 178 ~~-g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi 255 (332)
.+ |. ...+.. .......+.|-|+-.++++..-.+.|-++|-+.- +.++ .+. .+......+
T Consensus 579 LdFGDCHKS~fA-----------HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF----e~iq--~L~-~H~~ev~cL 640 (888)
T KOG0306|consen 579 LDFGDCHKSFFA-----------HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF----EEIQ--KLD-GHHSEVWCL 640 (888)
T ss_pred cccchhhhhhhc-----------ccCceeEEEEcccceeEEEecCcceEEeechhhh----hhhe--eec-cchheeeee
Confidence 32 22 111111 1112357889998899999988888888875532 1222 233 245667889
Q ss_pred EEeCCCeEEEEeCC
Q 020019 256 ELLSPTKLVVAGNP 269 (332)
Q Consensus 256 ~~~~dG~l~va~~~ 269 (332)
++.++|...|+...
T Consensus 641 av~~~G~~vvs~sh 654 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSH 654 (888)
T ss_pred EEcCCCCeEEeccC
Confidence 99999998888644
No 340
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=62.11 E-value=67 Score=31.90 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=75.0
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
+++.++...+ |.+.+...+ ..++.+||+-.-++...+... ...+.|.--+.--.+.++.++..+...|..+|
T Consensus 52 CVN~LeWn~d-G~lL~SGSD-----D~r~ivWd~~~~KllhsI~Tg--HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 52 CVNCLEWNAD-GELLASGSD-----DTRLIVWDPFEYKLLHSISTG--HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred eecceeecCC-CCEEeecCC-----cceEEeecchhcceeeeeecc--cccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 6899999986 887776544 457889998654554433321 11123332233333456889988888888888
Q ss_pred CCCceEEEecCCCCCCcc--cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCC
Q 020019 178 VKGEFLSIISSPLFTPKE--WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~--~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~ 231 (332)
.+.....-.++ ....+. +.......--|+..|++ ..+++....|.|..+|..-
T Consensus 124 l~~~~~~~~d~-~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 124 LDSSKEGGMDH-GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ccccccccccc-CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 76211110000 010000 11122344578899999 8888888899998888764
No 341
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=61.35 E-value=1e+02 Score=26.07 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=7.8
Q ss_pred CCCeEEEEcCCCceEEE
Q 020019 169 TGSKIWKVGVKGEFLSI 185 (332)
Q Consensus 169 ~~~~I~~v~~~g~~~~~ 185 (332)
.+|-|-+.-++|+...+
T Consensus 35 ~NGDvK~~~pDg~v~Y~ 51 (179)
T PF07202_consen 35 PNGDVKQTLPDGRVIYY 51 (179)
T ss_pred eCCCEeEEecCCcEEEE
Confidence 34444444455554333
No 342
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=60.61 E-value=1.2e+02 Score=26.69 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=49.3
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.+..+++||. |+|.+.... ...-..||.+.|.+++.+-- . ..-...+.+.|.-....|.+....|-.-|
T Consensus 233 avaav~vdps-grll~sg~~-----dssc~lydirg~r~iq~f~p---h--sadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 233 AVAAVAVDPS-GRLLASGHA-----DSSCMLYDIRGGRMIQRFHP---H--SADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred eeEEEEECCC-cceeeeccC-----CCceEEEEeeCCceeeeeCC---C--ccceeEEEeCCCceEEEEecccceEEEee
Confidence 4678999996 999887543 23345689998888765432 1 13344577887654556777777777766
Q ss_pred CCCce
Q 020019 178 VKGEF 182 (332)
Q Consensus 178 ~~g~~ 182 (332)
..|.+
T Consensus 302 lqgdl 306 (350)
T KOG0641|consen 302 LQGDL 306 (350)
T ss_pred cccch
Confidence 66653
No 343
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=59.85 E-value=1.5e+02 Score=27.48 Aligned_cols=201 Identities=14% Similarity=0.113 Sum_probs=102.5
Q ss_pred ceEEcCCCCEEEEEecCC-eEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCc-CCCccceE
Q 020019 49 CAKWDDSGRRFIVSFLDG-GIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADV-FGNKYSAV 126 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g-~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~-~~~~~~~l 126 (332)
++.|..|..-|-+...+| +||-.+|-.... + +... . .|-+..-|.+-- +.|-.+.++. +.-..++|
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~-----~-r~~~--~--~G~~~veMLfR~--N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESA-----S-RQFI--D--GGFKIVEMLFRS--NYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhh-----h-hccc--c--CchhhhhHhhhh--ceEEEecCCCCCCCCCceE
Confidence 477777777776666666 788888742211 1 1222 1 111222333322 3333332221 11345789
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc--CCCceEEEecCCCCCCcccccCccccC
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG--VKGEFLSIISSPLFTPKEWYKNLVGLN 204 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~--~~g~~~~~~~~~~~~~p~~~~~~~~~n 204 (332)
.+||-.....+....+..+ ..++.+.++. |.|.-. +.|+.++ .+=+....++ ...+|+
T Consensus 78 iIWDD~k~~~i~el~f~~~------I~~V~l~r~r-iVvvl~--~~I~VytF~~n~k~l~~~e-----------t~~NPk 137 (346)
T KOG2111|consen 78 IIWDDLKERCIIELSFNSE------IKAVKLRRDR-IVVVLE--NKIYVYTFPDNPKLLHVIE-----------TRSNPK 137 (346)
T ss_pred EEEecccCcEEEEEEeccc------eeeEEEcCCe-EEEEec--CeEEEEEcCCChhheeeee-----------cccCCC
Confidence 9999544444444445333 2357777663 444432 4555544 2323222221 234577
Q ss_pred eEEEc-cCc-eEEEE--eCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc---eEEEEcC
Q 020019 205 GIVYH-PDG-FLIVI--HTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS---ARLVESS 277 (332)
Q Consensus 205 Gi~~~-~dG-~Lyva--~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~---~~~v~~~ 277 (332)
|+|-- +.- .-+.+ -...|+|...++...+. .....|.. +.+...-|++..+|.+..+.... +|+..+.
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~A---H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP--NAPSIINA---HDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhhcCc--CCceEEEc---ccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 87744 222 22222 23467788888774321 01233442 33556688999999999987543 4544567
Q ss_pred CCceEEEEE
Q 020019 278 DGWETAAVV 286 (332)
Q Consensus 278 dg~~~~~~~ 286 (332)
+|...-++.
T Consensus 213 ~g~~l~E~R 221 (346)
T KOG2111|consen 213 DGTLLQELR 221 (346)
T ss_pred CCcEeeeee
Confidence 774444433
No 344
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=59.01 E-value=1.5e+02 Score=27.35 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=20.9
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEE
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVT 166 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvt 166 (332)
..+.+||+++++......++ .. ...-..+++ -++.|||.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p--~~-~r~~~~~~~-~~~~iyv~ 206 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENP--FL-GTAGSAIVH-KGNKLLLI 206 (346)
T ss_pred ceEEEEECCCCceeECccCC--CC-cCCCceEEE-ECCEEEEE
Confidence 46889999887654433331 10 111223333 35689985
No 345
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=58.28 E-value=44 Score=32.95 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=58.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
-+.+.++.+||+.+-+...+|.+..++-++.+. +. +. ..=+ .+...+...|| |+ ||+.++ +..-
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL----lg---~m-kSYF--GGLLCvcWSPD-GK-yIvtGG----EDDL 355 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL----LG---VM-KSYF--GGLLCVCWSPD-GK-YIVTGG----EDDL 355 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHH----HH---HH-Hhhc--cceEEEEEcCC-cc-EEEecC----Ccce
Confidence 668899999998766557789888888765431 11 11 1111 25678899997 99 555543 2334
Q ss_pred EEEEECCCCcEEEEEecCCCCCCCCCccceEECC
Q 020019 126 VAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDA 159 (332)
Q Consensus 126 l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~ 159 (332)
|.+|.....+++.+-+ + -++-.+++++||
T Consensus 356 VtVwSf~erRVVARGq----G-HkSWVs~VaFDp 384 (636)
T KOG2394|consen 356 VTVWSFEERRVVARGQ----G-HKSWVSVVAFDP 384 (636)
T ss_pred EEEEEeccceEEEecc----c-cccceeeEeecc
Confidence 6678776656554321 1 135677888885
No 346
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=58.18 E-value=2.2e+02 Score=29.04 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=46.8
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.......|.+-+++..+-++.+...|.++.+|..+++. .. .+...++ -.+.+....| |.|..+..
T Consensus 124 ~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~---~~---el~~h~d----~vQSa~WseD-G~llatsc--- 189 (1012)
T KOG1445|consen 124 VGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKT---AV---ELSGHTD----KVQSADWSED-GKLLATSC--- 189 (1012)
T ss_pred ecCCceEEEEeecccCcCceEEeccCceEEEEEcccCce---ee---cccCCch----hhhccccccC-CceEeeec---
Confidence 333334556777777644444444468999999887762 11 1222222 3456677776 88776653
Q ss_pred CCccceEEEEECCC
Q 020019 120 GNKYSAVAAYDLST 133 (332)
Q Consensus 120 ~~~~~~l~~~d~~~ 133 (332)
+...|.+||++.
T Consensus 190 --KdkqirifDPRa 201 (1012)
T KOG1445|consen 190 --KDKQIRIFDPRA 201 (1012)
T ss_pred --CCcceEEeCCcc
Confidence 345688999975
No 347
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.87 E-value=31 Score=33.38 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=37.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWK 175 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~ 175 (332)
.+.+|++|+. |+ |.+..+. ..++-+||+++-.....+..+ ...+.+++...|.|-++-...-.||+
T Consensus 295 ~V~siAv~~~-G~-YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp------~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 295 PVSSIAVDRG-GR-YMATTGL----DRKVKIWDLRNFYQLHTYRTP------HPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CcceEEECCC-Cc-EEeeccc----ccceeEeeeccccccceeecC------CCccccccccccceeeecCCeeeeeh
Confidence 4689999996 88 5554442 356888999865433222222 12334677766755444333334554
No 348
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.63 E-value=1.3e+02 Score=30.86 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=95.7
Q ss_pred EecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcC
Q 020019 40 YHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVF 119 (332)
Q Consensus 40 ~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~ 119 (332)
+.+...--+++.++....++..+...|.|-.||....+. +. ++.-. . ..+..+.++|- +. |.+.+.
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~----vr--tLtgh--~--~~~~sv~f~P~-~~-~~a~gS-- 131 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI----VR--TLTGH--L--LNITSVDFHPY-GE-FFASGS-- 131 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh----hh--hhhcc--c--cCcceeeeccc-eE-Eecccc--
Confidence 334444557889999887776667788999999875541 11 22110 0 12345557774 44 332221
Q ss_pred CCccceEEEEECC-CCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCC-CeEEEEcCC-CceEEEecCCCCCCccc
Q 020019 120 GNKYSAVAAYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTG-SKIWKVGVK-GEFLSIISSPLFTPKEW 196 (332)
Q Consensus 120 ~~~~~~l~~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~-~~I~~v~~~-g~~~~~~~~~~~~~p~~ 196 (332)
-.+.+-.||.+ .|-... +.- .....+-+++.|+| -|+.+.+. ..+-..|.. |++..-+.....
T Consensus 132 --tdtd~~iwD~Rk~Gc~~~-~~s-----~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~~ef~~~e~----- 197 (825)
T KOG0267|consen 132 --TDTDLKIWDIRKKGCSHT-YKS-----HTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKLSKEFKSHEG----- 197 (825)
T ss_pred --ccccceehhhhccCceee-ecC-----CcceeEEEeecCCC-ceeeccCCcceeeeecccccccccccccccc-----
Confidence 12335567765 332221 110 11334557889998 45555544 445555542 554422211111
Q ss_pred ccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 197 YKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
..+-+.++|...|.-.-.....+-.+++++- ..+.-.+.....+.+.+++++|+.+.++..
T Consensus 198 -----~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 198 -----KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-------EVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred -----cccccccCchhhhhccCCCCceeeeecccee-------EEeeccCCccCCceeeeecCCceeeecCch
Confidence 1123334444444433333444444555532 222222223456777888899888888643
No 349
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=56.87 E-value=28 Score=24.66 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=25.3
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEE
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLF 138 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~ 138 (332)
.-+.+|++.|+-|+++..... ..+. .||+++|+.+.
T Consensus 8 rKvL~DP~SG~Yy~vd~P~Qp--~~k~-lfDPETGqYVe 43 (75)
T PF15232_consen 8 RKVLQDPESGQYYVVDAPVQP--KTKT-LFDPETGQYVE 43 (75)
T ss_pred ccEeecCCCCCEEEEecCCCc--ceee-eecCCCCcEEE
Confidence 357889989999999875321 1222 48999999764
No 350
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=56.21 E-value=50 Score=31.99 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=80.3
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
+|.-+....+ |+..+..+ +.+-|..||..++++...+.+. ....|+.+--+- -|++-.....+|.+|
T Consensus 131 GPY~~~ytrn-GrhlllgG-----rKGHlAa~Dw~t~~L~~Ei~v~------Etv~Dv~~LHne-q~~AVAQK~y~yvYD 197 (545)
T KOG1272|consen 131 GPYHLDYTRN-GRHLLLGG-----RKGHLAAFDWVTKKLHFEINVM------ETVRDVTFLHNE-QFFAVAQKKYVYVYD 197 (545)
T ss_pred CCeeeeecCC-ccEEEecC-----Cccceeeeecccceeeeeeehh------hhhhhhhhhcch-HHHHhhhhceEEEec
Confidence 7899998885 88666644 3567899999998887666552 122334433221 334444455666667
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL 257 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~ 257 (332)
.+|..+--+.. ....+-+.|-|-=.|.++-..+|-+--.|..+|+ .+..+... .+..|-|+-
T Consensus 198 ~~GtElHClk~-----------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk----lVa~~~t~---~G~~~vm~q 259 (545)
T KOG1272|consen 198 NNGTELHCLKR-----------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK----LVASIRTG---AGRTDVMKQ 259 (545)
T ss_pred CCCcEEeehhh-----------cCchhhhcccchhheeeecccCCceEEEeechhh----hhHHHHcc---CCccchhhc
Confidence 66653321110 1123445666666778887788877777877773 33333322 234555666
Q ss_pred eCCCeEEEEe
Q 020019 258 LSPTKLVVAG 267 (332)
Q Consensus 258 ~~dG~l~va~ 267 (332)
.|-+-+.=.+
T Consensus 260 NP~NaVih~G 269 (545)
T KOG1272|consen 260 NPYNAVIHLG 269 (545)
T ss_pred CCccceEEEc
Confidence 6654444444
No 351
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=55.26 E-value=1.7e+02 Score=26.89 Aligned_cols=187 Identities=13% Similarity=0.062 Sum_probs=82.1
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCC-CCccceeeeEEecccCcC-CCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDY-PPGTVLEEVTLVKDLELT-GNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
....|++..+.+-|++.. .+.|++=+ ++++ + + ......... .-....|.++. +..|++...
T Consensus 18 ~l~dV~F~d~~~G~~VG~-~g~il~T~-DGG~tW-----~--~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~~------ 80 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGA-YGTILKTT-DGGKTW-----Q--PVSLDLDNPFDYHLNSISFDG--NEGWIVGEP------ 80 (302)
T ss_dssp -EEEEEESSSS-EEEEET-TTEEEEES-STTSS------E--E-----S-----EEEEEEEET--TEEEEEEET------
T ss_pred ceEEEEEecCCEEEEEec-CCEEEEEC-CCCccc-----c--ccccCCCccceeeEEEEEecC--CceEEEcCC------
Confidence 557788887667676653 46676664 3343 2 1 111111100 01345677764 567877542
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCcccc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
+.|+ .-.+.|+--..+.++.+. ...+..+....++.+++.. ..|.||+-...|+.=....... ....
T Consensus 81 g~ll-~T~DgG~tW~~v~l~~~l--pgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~---------~gs~ 147 (302)
T PF14870_consen 81 GLLL-HTTDGGKTWERVPLSSKL--PGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSET---------SGSI 147 (302)
T ss_dssp TEEE-EESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S-------------E
T ss_pred ceEE-EecCCCCCcEEeecCCCC--CCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccCC---------ccee
Confidence 2233 333445544344442211 1233445544455555543 3578888776676322111111 1235
Q ss_pred CeEEEccCceEEEEeCCCCeEEEE-eCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCCc
Q 020019 204 NGIVYHPDGFLIVIHTFSGNLFKI-DIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNPS 270 (332)
Q Consensus 204 nGi~~~~dG~Lyva~~~~~~i~~i-d~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~~ 270 (332)
+.+...+||+++. -...|.+|+- ++... .-+..... .-.....|.+.++|.||+.....
T Consensus 148 ~~~~r~~dG~~va-vs~~G~~~~s~~~G~~-----~w~~~~r~--~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 148 NDITRSSDGRYVA-VSSRGNFYSSWDPGQT-----TWQPHNRN--SSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp EEEEE-TTS-EEE-EETTSSEEEEE-TT-S-----S-EEEE----SSS-EEEEEE-TTS-EEEEETTT
T ss_pred EeEEECCCCcEEE-EECcccEEEEecCCCc-----cceEEccC--ccceehhceecCCCCEEEEeCCc
Confidence 6778888994332 2345566543 33211 12222221 12456789999999999998664
No 352
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=55.24 E-value=19 Score=32.24 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=45.1
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIW 174 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~ 174 (332)
+.+|+.+-+| ++++.+.+. ..++.+|.-++......... . ....|++|+.|+-++..+.+..++|.
T Consensus 253 Gv~gvrIRpD-~KIlATAGW-----D~RiRVyswrtl~pLAVLky---H--sagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 253 GVSGVRIRPD-GKILATAGW-----DHRIRVYSWRTLNPLAVLKY---H--SAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CccceEEccC-CcEEeeccc-----CCcEEEEEeccCCchhhhhh---h--hcceeEEEeCCCCchhhhccCCceEE
Confidence 4578888886 887777654 34677777777766544333 1 25689999999966777766666553
No 353
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=54.90 E-value=2e+02 Score=27.60 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=99.2
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEE
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLV 113 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v 113 (332)
.....+.+...-.|.++|.+-..-+|++ ..++.+..+|..+.+.. +.. ..... ....+.+++.|-++.+++
T Consensus 218 ~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~--~~~--~~~ah----~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 218 DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK--PSH--SVKAH----SAEVNCVAFNPFNEFILA 289 (422)
T ss_pred cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC--Ccc--ccccc----CCceeEEEeCCCCCceEE
Confidence 3445566666677899999987766666 66788999987642210 000 11100 124688999997555444
Q ss_pred EEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC--CceEEEecCCC
Q 020019 114 VAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK--GEFLSIISSPL 190 (332)
Q Consensus 114 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~ 190 (332)
+. . ..+.|..||+++-.. ....+.++. .-...+...|+. .+..+....+++...|.. |+... .....
T Consensus 290 T~-S----~D~tV~LwDlRnL~~-~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~ 359 (422)
T KOG0264|consen 290 TG-S----ADKTVALWDLRNLNK-PLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAE 359 (422)
T ss_pred ec-c----CCCcEEEeechhccc-CceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hhhhc
Confidence 43 2 245788999986433 223443221 234457788875 577777777777776654 43221 01100
Q ss_pred CCCccc---cc-CccccCeEEEccCc-eEEEEeCCCCeEEEEe
Q 020019 191 FTPKEW---YK-NLVGLNGIVYHPDG-FLIVIHTFSGNLFKID 228 (332)
Q Consensus 191 ~~~p~~---~~-~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id 228 (332)
-.+|.. .. .....+.+.++|.. ++..+-...|.+....
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 011110 01 12345677788887 7776666666444443
No 354
>PF13964 Kelch_6: Kelch motif
Probab=54.70 E-value=23 Score=22.46 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=20.6
Q ss_pred CeEEEEEeCcC-CCccceEEEEECCCCcEEE
Q 020019 109 NRLLVVAADVF-GNKYSAVAAYDLSTWNRLF 138 (332)
Q Consensus 109 g~l~v~~~~~~-~~~~~~l~~~d~~~g~~~~ 138 (332)
++|||..+... ....+.+.+||+++++...
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 42 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQ 42 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEE
Confidence 78999865432 2234678999999877544
No 355
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=54.56 E-value=2.5e+02 Score=28.61 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=26.7
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEec
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQL 142 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l 142 (332)
.-|.++ +.||+|.. .+.++.+|.++|+.++.++.
T Consensus 209 tPLkvg---dtlYvcTp------hn~v~ALDa~TGkekWkydp 242 (773)
T COG4993 209 TPLKVG---DTLYVCTP------HNRVFALDAATGKEKWKYDP 242 (773)
T ss_pred cceEEC---CEEEEecC------cceeEEeeccCCceeeecCC
Confidence 345554 78999986 46789999999999887764
No 356
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=54.53 E-value=1.8e+02 Score=26.78 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=69.5
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
....|.+++..+.|.|+..+ +.|..||.....+...+... .-.-+.++.++-.+|+.+ ..|.|.++|
T Consensus 15 ~IS~v~f~~~~~~LLvssWD------gslrlYdv~~~~l~~~~~~~------~plL~c~F~d~~~~~~G~-~dg~vr~~D 81 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD------GSLRLYDVPANSLKLKFKHG------APLLDCAFADESTIVTGG-LDGQVRRYD 81 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc------CcEEEEeccchhhhhheecC------CceeeeeccCCceEEEec-cCceEEEEE
Confidence 55678888877889999875 45777888766554434432 223467777666666664 468899998
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCC
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVD 231 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~ 231 (332)
..+.....+... ..+..+|...+.-...|+-.=.++|-.+|+..
T Consensus 82 ln~~~~~~igth----------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 82 LNTGNEDQIGTH----------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ecCCcceeeccC----------CCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 775433333221 12345777775544555555566787787763
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=53.19 E-value=2.1e+02 Score=27.16 Aligned_cols=118 Identities=15% Similarity=0.232 Sum_probs=65.0
Q ss_pred ceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC---------
Q 020019 100 LGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--------- 169 (332)
Q Consensus 100 ~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--------- 169 (332)
.++.+.|+ |+.++...+.+++....|.++|+++|+.... .+. ......++..+||+ +|.+...
T Consensus 127 ~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~-----~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 127 GGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE-----NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE-----EEESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc-----ccccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 36788887 6544433332223456789999999976532 221 11122389999975 5555432
Q ss_pred -CCeEEEEcCCCc---eEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--C-CeEEEEeCCCC
Q 020019 170 -GSKIWKVGVKGE---FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--S-GNLFKIDIVDG 232 (332)
Q Consensus 170 -~~~I~~v~~~g~---~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~-~~i~~id~~~~ 232 (332)
...|++...... ...++.... .....-++..++|| .|++.... + ..+|.+++..+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~--------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPD--------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TT--------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCcEEEEEECCCChHhCeeEEeecC--------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 334777665422 122332211 01113478889999 77765443 3 56899998864
No 358
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=51.25 E-value=18 Score=33.43 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=39.4
Q ss_pred ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcC
Q 020019 122 KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGV 178 (332)
Q Consensus 122 ~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~ 178 (332)
..+++++||++..+......+.- ........+.++..||.+.+.....+.|+|+|.
T Consensus 327 q~g~v~vwdL~~~ep~~~ttl~~-s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCTTLTH-SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEECCCCCCccCceEEe-ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 45789999998776543223321 123466788999999998877777899999873
No 359
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.74 E-value=3.7e+02 Score=29.38 Aligned_cols=157 Identities=12% Similarity=0.127 Sum_probs=86.4
Q ss_pred CccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEE
Q 020019 97 NGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWK 175 (332)
Q Consensus 97 ~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~ 175 (332)
..+..|.-+-.+|.++++.-. .+.|.+||.+.......+....+......-..+.+-++|- =.|+-+.+|.|+.
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfa-----DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFA-----DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred ccceeecccccCCceEEEeec-----CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 355666666656777777543 4568889976543322121111111112256677777774 3788888999999
Q ss_pred EcCCCceE-EEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEe----cCCCCC
Q 020019 176 VGVKGEFL-SIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV----AGGPLS 250 (332)
Q Consensus 176 v~~~g~~~-~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~----~g~~~~ 250 (332)
+|...... .+... . .+ + ........+.++++--++.+-.. ..|-.+++.+.+ +..+.. -++..+
T Consensus 1284 ~DlR~~~~e~~~~i-v--~~-~-~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-----l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTI-V--AH-W-EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-----LNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred EecccCccccccee-e--ec-c-ccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-----hcccccCcccccCcCC
Confidence 99775311 11100 0 00 0 00112567888888877766544 556556666442 222221 134455
Q ss_pred CCCeEEEeCCCeEEEEeCC
Q 020019 251 FGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 251 ~pdGi~~~~dG~l~va~~~ 269 (332)
.+..+++.|---+.+++..
T Consensus 1353 s~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred CcceeeecchhHhhhhccC
Confidence 6778888886556666644
No 360
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=50.55 E-value=2.1e+02 Score=26.44 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=51.9
Q ss_pred ceEEEEECCCCcEEEEEecCCCCC-CCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecC--CCCCCcccccC
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSD-GKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISS--PLFTPKEWYKN 199 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~-~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~--~~~~~p~~~~~ 199 (332)
..|..+|++++++...+.+...++ +...+.+.-...|. .+|.+ .....|+.++..|+...-..- ...... +.
T Consensus 67 ~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~-~~~~~l~~~n~~G~~~~~~~~~~~~~~~~---~~ 142 (333)
T PF13970_consen 67 HSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNS-YAFPKLFLFNSQGEVLKKIDLEEEDLEFE---PS 142 (333)
T ss_dssp -EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEE-GGGTEEEEE-TT--EEEEEE---TTS--------
T ss_pred ceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEec-CCcceEEEEcCCCeEEEEEecccCccccc---cc
Confidence 478999999999988888743211 23455556655554 24444 566889999999986644321 111100 01
Q ss_pred cc--ccCeEEEccCceEEEEeCC----------C-CeEEEEeCCCC
Q 020019 200 LV--GLNGIVYHPDGFLIVIHTF----------S-GNLFKIDIVDG 232 (332)
Q Consensus 200 ~~--~~nGi~~~~dG~Lyva~~~----------~-~~i~~id~~~~ 232 (332)
.. ..+.....+|+.+|.+... . .-+..+|+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~ 188 (333)
T PF13970_consen 143 EFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTK 188 (333)
T ss_dssp --BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT-
T ss_pred ccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCC
Confidence 11 1245556677777877541 1 13567888877
No 361
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=50.44 E-value=2.2e+02 Score=29.55 Aligned_cols=112 Identities=9% Similarity=0.068 Sum_probs=66.2
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
..+++||.-.+.++.-.+..|..++..+++- ...|-..-+ ....+.-+.+||. |. |++..- ....|.
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq------~k~FKgs~~-~eG~lIKv~lDPS-gi-Y~atSc----sdktl~ 666 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ------VKSFKGSRD-HEGDLIKVILDPS-GI-YLATSC----SDKTLC 666 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccce------eeeeccccc-CCCceEEEEECCC-cc-EEEEee----cCCceE
Confidence 4577888777666666667787887777762 113321111 1124667888996 65 665432 123577
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
.||.-+|+-+. +..+. .....|+.+.+|=+=.|+-++.|+||...
T Consensus 667 ~~Df~sgEcvA--~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 667 FVDFVSGECVA--QMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred EEEeccchhhh--hhcCc---chheeeeeecccchhheeecCCceEEEEE
Confidence 88998887542 22111 13455677777755667777777776643
No 362
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=49.80 E-value=64 Score=29.06 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEE
Q 020019 149 KSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKI 227 (332)
Q Consensus 149 ~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~i 227 (332)
+..-+++.+-||+.|+.|..=.++|.++.=. ...+.++. + ...+.|.++|+||-.|..+-....+|.-+
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk---y-------Hsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK---Y-------HSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh---h-------hhcceeEEEeCCCCchhhhccCCceEEee
Confidence 3556889999999999987666776666532 33332221 1 22568999999997677666666666443
No 363
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=49.59 E-value=2.4e+02 Score=28.70 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=26.3
Q ss_pred ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 200 LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 200 ~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
..+...+++|.-| +||+..+ .++||-+++.+.
T Consensus 271 s~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~ 303 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSL 303 (720)
T ss_pred eeeeEEEEecCCCCeEEEEec-CCcEEEEecccc
Confidence 3466788999999 9999988 678999998754
No 364
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.34 E-value=2.3e+02 Score=26.69 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=70.8
Q ss_pred EEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCc------cceeeeEEecccCcCCCccceEEEeC-CCCe
Q 020019 38 YHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPG------TVLEEVTLVKDLELTGNGSLGLVLDH-PRNR 110 (332)
Q Consensus 38 i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~gi~vd~-~~g~ 110 (332)
..+.+...+..-+.+..||.++-+...+.+|..+-..++.... .+.|-+.|......+ .--...+ .++.
T Consensus 229 ~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~----~i~~at~~~~~~ 304 (406)
T KOG0295|consen 229 KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYP----SISEATGSTNGG 304 (406)
T ss_pred EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCc----chhhccCCCCCc
Confidence 3344444466778999999877555667777777666652211 112222332211111 0000011 0111
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCC
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKG 180 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g 180 (332)
-|.... .+...|..||..+|..+. .+.+. ..-..++++.|.|...++...++.+...|...
T Consensus 305 ~~l~s~----SrDktIk~wdv~tg~cL~--tL~gh---dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 305 QVLGSG----SRDKTIKIWDVSTGMCLF--TLVGH---DNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred cEEEee----cccceEEEEeccCCeEEE--EEecc---cceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 122221 134457789999987653 33221 25677899999998888877777777766553
No 365
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.18 E-value=2e+02 Score=28.66 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeC
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~ 229 (332)
+.+-..+..|+....+.--..|.|..+|..-+....... ...|+-++|+|+|.+++.-...|.|.-||.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-----------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA-----------EFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee-----------cccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 455567888887666655567888888877554443322 245789999999977777778899988887
Q ss_pred CC
Q 020019 230 VD 231 (332)
Q Consensus 230 ~~ 231 (332)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 63
No 366
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=46.65 E-value=2.4e+02 Score=25.98 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCccceEECCCCcEEEEeCCCCeEEEE-cCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEe
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKIWKV-GVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKID 228 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I~~v-~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id 228 (332)
...+++...+||+ ||.-+..|.+|+- ++....-...... .......+.|++|+.||... ..+.|+.=+
T Consensus 145 gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 145 GSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRN---------SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp --EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE-----------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred ceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEEccC---------ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 4566777788886 4444455666654 4432211111111 12345788999999998876 566665554
Q ss_pred CCCCCCccceeEEEEecCCCCC--CCCeEEEeCCCeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccc---eEEEE-
Q 020019 229 IVDGVGEGEEIKLIRVAGGPLS--FGDGLELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLA---TAATV- 302 (332)
Q Consensus 229 ~~~~~~~~~~~~~v~~~g~~~~--~pdGi~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~p---t~va~- 302 (332)
.... . +.-..-..+ .... +.-.|+..+++++|++......++..+.| ++ ..+.... ...| ..+.|
T Consensus 214 ~~~~-~--~~w~~~~~~-~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgG-kt--W~~~~~~--~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 214 DPDD-G--ETWSEPIIP-IKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGG-KT--WQKDRVG--ENVPSNLYRIVFV 284 (302)
T ss_dssp -TTE-E--EEE---B-T-TSS--S-EEEEEESSSS-EEEEESTT-EEEESSTT-SS---EE-GGG--TTSSS---EEEEE
T ss_pred CCCC-c--cccccccCC-cccCceeeEEEEecCCCCEEEEeCCccEEEeCCCC-cc--ceECccc--cCCCCceEEEEEc
Confidence 1211 0 011110011 1111 12346788889999998765444444445 32 2221110 1223 33555
Q ss_pred ECCeEEEEEe
Q 020019 303 KDGRVYLNHM 312 (332)
Q Consensus 303 ~~g~lyv~~~ 312 (332)
..++-||...
T Consensus 285 ~~~~gf~lG~ 294 (302)
T PF14870_consen 285 NPDKGFVLGQ 294 (302)
T ss_dssp ETTEEEEE-S
T ss_pred CCCceEEECC
Confidence 6677777443
No 367
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=46.02 E-value=2.2e+02 Score=25.34 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=70.9
Q ss_pred EEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeC---CCCeEEEEcCCC--ceEEEecCC-CCCCcccccCc
Q 020019 127 AAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDV---TGSKIWKVGVKG--EFLSIISSP-LFTPKEWYKNL 200 (332)
Q Consensus 127 ~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~---~~~~I~~v~~~g--~~~~~~~~~-~~~~p~~~~~~ 200 (332)
..||+.+++.... .+ ....|+.+-++.+||++.++-- +...|..+++.. ....+.+.. .+..+.
T Consensus 49 ~~yD~~tn~~rpl-~v----~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R----- 118 (243)
T PF07250_consen 49 VEYDPNTNTFRPL-TV----QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR----- 118 (243)
T ss_pred EEEecCCCcEEec-cC----CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC-----
Confidence 4689999887532 22 2357888889999999887532 223455566543 111121111 122222
Q ss_pred cccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEe----c-CCCC-CCCCeEEEeCCCeEEEEeCCceEEE
Q 020019 201 VGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV----A-GGPL-SFGDGLELLSPTKLVVAGNPSARLV 274 (332)
Q Consensus 201 ~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~----~-g~~~-~~pdGi~~~~dG~l~va~~~~~~~v 274 (332)
=.|.-..+ +||+++|.--..+.-+.+-+..... .....+.. . ..+. -+| -+-+-|||+||+..+...++.
T Consensus 119 WYpT~~~L-~DG~vlIvGG~~~~t~E~~P~~~~~--~~~~~~~~l~~~~~~~~~nlYP-~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 119 WYPTATTL-PDGRVLIVGGSNNPTYEFWPPKGPG--PGPVTLPFLSQTSDTLPNNLYP-FVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred ccccceEC-CCCCEEEEeCcCCCcccccCCccCC--CCceeeecchhhhccCccccCc-eEEEcCCCCEEEEEcCCcEEE
Confidence 23444554 6885555444334445554432111 01111111 0 0111 245 366779999999988766655
Q ss_pred EcCCC
Q 020019 275 ESSDG 279 (332)
Q Consensus 275 ~~~dg 279 (332)
....+
T Consensus 195 d~~~n 199 (243)
T PF07250_consen 195 DYKTN 199 (243)
T ss_pred eCCCC
Confidence 44333
No 368
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=45.64 E-value=33 Score=33.14 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.8
Q ss_pred ccccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 200 LVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 200 ~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
+--|.||.+|.||..|+++..+.++++.++.
T Consensus 466 fylphgl~~dkdgf~~~tdvash~v~k~k~~ 496 (501)
T KOG3567|consen 466 FYLPHGLSIDKDGFYWVTDVASHQVFKLKPN 496 (501)
T ss_pred eecCCcceecCCCcEEeecccchhhhhcccc
Confidence 3457899999999999999999999887765
No 369
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=45.46 E-value=1.4e+02 Score=26.74 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=29.9
Q ss_pred CCccceEECCCCcEEEEeCCCCeE-------EEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKI-------WKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVI 217 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I-------~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva 217 (332)
..|.|+|++.+| +|......|.. |++|.+|.+..--..+.+. |-..+ .....+.+++||++++.
T Consensus 90 g~~lD~AI~G~G-fF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~-pI~vp--~~~~~~~I~~dG~I~~~ 160 (260)
T PRK12694 90 GNSKDVAINGQG-FFQVLMPDGTTAYTRDGSFQTNAQGQLVTSSGYPLQP-AITIP--QNATSLTIGKDGTVSVT 160 (260)
T ss_pred CCcceEEEcCCc-EEEEEcCCCCeEEeeCCCceECCCCCEECCCCCEecc-ceecC--CCcceeEECCCCeEEEe
Confidence 567788887776 44444334432 2344555432211111111 11000 01136888888888764
No 370
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=44.43 E-value=2.8e+02 Score=26.10 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=21.2
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD 167 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd 167 (332)
..+.+||+++++......++ .. ......+++. +++||+.-
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p--~~-~~~~~a~v~~-~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESP--FL-GTAGSAVVIK-GNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCC--CC-CCCcceEEEE-CCEEEEEe
Confidence 46889999887654332231 11 1112234443 46799853
No 371
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=44.42 E-value=79 Score=28.42 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=10.9
Q ss_pred CeEEEccCceEEEE
Q 020019 204 NGIVYHPDGFLIVI 217 (332)
Q Consensus 204 nGi~~~~dG~Lyva 217 (332)
..|.+++||.+++.
T Consensus 149 ~~i~I~~dG~I~~~ 162 (264)
T PRK12816 149 NSITISEEGIVSVK 162 (264)
T ss_pred ccEEECCCCeEEEe
Confidence 47889999988763
No 372
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.31 E-value=3.1e+02 Score=28.53 Aligned_cols=185 Identities=15% Similarity=0.109 Sum_probs=91.9
Q ss_pred cccceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCc-cceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNG-SLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
....+.+.|.-.-+|++ ...|.|.+||...-.. -+ +.+. .+++ +..+-.+| ++-|++.++ +.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r----~~-~k~~-----AH~GpV~c~nwhP--nr~~lATGG----RD 241 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR----CE-KKLT-----AHNGPVLCLNWHP--NREWLATGG----RD 241 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchh----HH-HHhh-----cccCceEEEeecC--CCceeeecC----CC
Confidence 34567888875445555 6678999999753221 01 0111 2233 36677788 456888765 34
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCC--CCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVT--GSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~--~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
..+-+||..+++......+.. ..-.+-+..=|+-. ...+.+. ...|++.|....++.+. .|. ...
T Consensus 242 K~vkiWd~t~~~~~~~~tInT----iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~---t~~-----eH~ 309 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINT----IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA---TFL-----EHT 309 (839)
T ss_pred ccEEEEeccCCCccceeEEee----cceeeeeeeccCccchhhhhhccccceEEEEeeccccccce---eee-----ccC
Confidence 567778876554322222210 11223355555532 2223322 34566666543333221 110 011
Q ss_pred cccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
....||+|.... .+.++-.-.+.|+.=..+.. . .+ ..+..+.|+.+.++|.+|.+.+.
T Consensus 310 ~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna------t----~p-id~a~~~~~s~g~~g~l~fa~n~ 368 (839)
T KOG0269|consen 310 DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA------T----TP-IDLANNGGLSVGQFGDLYFAVNP 368 (839)
T ss_pred ccccceeccCCCceeeEeecCccHHHHhhhhcc------c----Ch-hhhcCcccccccccCceeEEecc
Confidence 235688887532 33333333333322111111 0 01 12345678889999999999764
No 373
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=40.36 E-value=3.1e+02 Score=25.58 Aligned_cols=197 Identities=12% Similarity=0.090 Sum_probs=100.9
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCc-cceEEEeCCCCeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNG-SLGLVLDHPRNRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~vd~~~g~l~v~~~~~~~~~~~ 124 (332)
..+++.+.+||.-+|... +..|..++...-... .+..+....-.....+ ...++++|.+-.++.+-... .
T Consensus 160 aAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~---c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-----q 230 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRD---CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-----Q 230 (406)
T ss_pred hheeEEecCCCCeEeecc-cceEEEeeccCCCCC---CcchhhhhcccccccceeeeeeccCCCCcceeeeccc-----c
Confidence 446899999998777664 577888886321110 0111111111111112 34677888755566664321 2
Q ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCc-EEEEeCCCCeEEEEcCCC--ceEEEecCCCCCCcccccCcc
Q 020019 125 AVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGN-AYVTDVTGSKIWKVGVKG--EFLSIISSPLFTPKEWYKNLV 201 (332)
Q Consensus 125 ~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~-lyvtd~~~~~I~~v~~~g--~~~~~~~~~~~~~p~~~~~~~ 201 (332)
.+..|.-..+.+... + .........+...++|+ +|........|...|..- ..+.-+..... ...
T Consensus 231 ~~giy~~~~~~pl~l--l---ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~-------~TN 298 (406)
T KOG2919|consen 231 RVGIYNDDGRRPLQL--L---GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG-------DTN 298 (406)
T ss_pred eeeeEecCCCCceee--e---cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc-------Ccc
Confidence 233343333444432 2 11135566788899986 777776777888877542 11110100000 000
Q ss_pred ccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 202 GLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 202 ~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
.--=..++|+|++.++-...|.|.++|+++.. ..+.... ..-....|+.+.|-=-|..+..+
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~g---n~~sv~~---~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLG---NEVSVTG---NYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCC---Ccccccc---cccccccceecCcccceeeeccC
Confidence 01123456778777776678889999998731 1222111 12235667888776334444333
No 374
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=39.83 E-value=4e+02 Score=29.49 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=39.2
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK 179 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~ 179 (332)
.+++..||..+....+..+.+ . ..+...-+++|+.++..+.-+..|.+...|..
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~--~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQ--L-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred ccceEEecchhhhhHHhhhcC--c-cccceeEEEecCCceEEEEecCCceEEEEEee
Confidence 356888999876666555542 1 24567789999999988888888887777754
No 375
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=39.72 E-value=1.5e+02 Score=26.44 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=30.2
Q ss_pred CCccceEECCCCcEEEEeCCCCeE-------EEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEE
Q 020019 150 SCADDVTVDAEGNAYVTDVTGSKI-------WKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVI 217 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd~~~~~I-------~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva 217 (332)
..+.|+|+..+| +|......|.. |++|.+|.+...-..+.+. |-..+ .....+.+++||++++.
T Consensus 88 g~~lD~AI~G~G-fF~V~~~~g~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~-~I~lp--~~~~~~~I~~dG~i~~~ 158 (259)
T TIGR02488 88 GNDLDLAIEGEG-FFQVLMPDGTTAYTRDGAFKINAEGQLVTSNGYPLQP-EITIP--ENATSITVGSDGEVSVR 158 (259)
T ss_pred CCcceEEEcCCc-EEEEEcCCCCeEEeeCCceEECCCCCEECCCCCEecC-ceecC--CCCceEEECCCCeEEEe
Confidence 466778887776 44443333322 3355555533211111111 10000 01136888888888763
No 376
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.30 E-value=3e+02 Score=24.71 Aligned_cols=121 Identities=9% Similarity=0.135 Sum_probs=0.0
Q ss_pred EEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEec--------ccCcCCCccceEEEeCCCCe
Q 020019 39 HYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVK--------DLELTGNGSLGLVLDHPRNR 110 (332)
Q Consensus 39 ~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~gi~vd~~~g~ 110 (332)
.+.+...|.+.++-.....-.++...+|++..+|..+++ .+.++. .|. -+.....++++.+
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k-------~v~~ie~yk~~~~lRp~-~g~wigala~~ed--- 219 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK-------HVSMIEPYKNPNLLRPD-WGKWIGALAVNED--- 219 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc-------eeEEeccccChhhcCcc-cCceeEEEeccCc---
Q ss_pred EEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE
Q 020019 111 LLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS 184 (332)
Q Consensus 111 l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~ 184 (332)
|.+.++ ..++..|.+++-+....++++++.. ++.++.| ..+.-...+.|..+...|....
T Consensus 220 -WlvCGg-----Gp~lslwhLrsse~t~vfpipa~v~------~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a 279 (325)
T KOG0649|consen 220 -WLVCGG-----GPKLSLWHLRSSESTCVFPIPARVH------LVDFVDD--CVLIGGEGNHVQSYTLNGVLQA 279 (325)
T ss_pred -eEEecC-----CCceeEEeccCCCceEEEeccccee------Eeeeecc--eEEEeccccceeeeeeccEEEE
No 377
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=36.20 E-value=4.1e+02 Score=25.75 Aligned_cols=149 Identities=9% Similarity=0.184 Sum_probs=72.9
Q ss_pred eEEEeCCCCeEEEEEeCcC-CC---ccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEE--eCC-----
Q 020019 101 GLVLDHPRNRLLVVAADVF-GN---KYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVT--DVT----- 169 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~-~~---~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvt--d~~----- 169 (332)
.|.++|....|++-.+... .+ -.+.|+.|+.++.+......-++|. ....+.+++-|.|.+|+= +..
T Consensus 71 sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~--pRsshq~va~~s~~l~~fGGEfaSPnq~ 148 (521)
T KOG1230|consen 71 SLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPP--PRSSHQAVAVPSNILWLFGGEFASPNQE 148 (521)
T ss_pred ceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcC--CCccceeEEeccCeEEEeccccCCcchh
Confidence 5667776555555433221 11 1356889998876655433322222 244566777787777762 111
Q ss_pred ----CCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEE-----------ccCc-eEEEEeCCCCeEEEEeCCCCC
Q 020019 170 ----GSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVY-----------HPDG-FLIVIHTFSGNLFKIDIVDGV 233 (332)
Q Consensus 170 ----~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~-----------~~dG-~Lyva~~~~~~i~~id~~~~~ 233 (332)
-.-+|.++...+.-..+..+..+.|. .|-..+++ +..+ +.|+. -||.|++++-+
T Consensus 149 qF~HYkD~W~fd~~trkweql~~~g~PS~R-----SGHRMvawK~~lilFGGFhd~nr~y~YyN-----Dvy~FdLdtyk 218 (521)
T KOG1230|consen 149 QFHHYKDLWLFDLKTRKWEQLEFGGGPSPR-----SGHRMVAWKRQLILFGGFHDSNRDYIYYN-----DVYAFDLDTYK 218 (521)
T ss_pred hhhhhhheeeeeeccchheeeccCCCCCCC-----ccceeEEeeeeEEEEcceecCCCceEEee-----eeEEEecccee
Confidence 23466677553321112222222222 12222332 2233 55543 37888988652
Q ss_pred CccceeEEEEecCCCCCCC---CeEEEeCCCeEEEEe
Q 020019 234 GEGEEIKLIRVAGGPLSFG---DGLELLSPTKLVVAG 267 (332)
Q Consensus 234 ~~~~~~~~v~~~g~~~~~p---dGi~~~~dG~l~va~ 267 (332)
=..+..+|+ .+.| --|.+.|+|.+||-+
T Consensus 219 -----W~Klepsga-~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 219 -----WSKLEPSGA-GPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred -----eeeccCCCC-CCCCCCcceEEecCCCcEEEEc
Confidence 222333321 1211 245667888888875
No 378
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=36.10 E-value=39 Score=18.61 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHhh
Q 020019 5 LCSAKSLLFFFVISAI 20 (332)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (332)
+-.+||+++.+++.+.
T Consensus 4 ~~mmKkil~~l~a~~~ 19 (25)
T PF08139_consen 4 LSMMKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567999888665543
No 379
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.73 E-value=6.3e+02 Score=27.75 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=88.2
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-CeEEEEEeCcCCCccceEEEEECCCC
Q 020019 56 GRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-NRLLVVAADVFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 56 g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g~l~v~~~~~~~~~~~~l~~~d~~~g 134 (332)
|++++....+|.|..+|..-....+ .+. .+-...... ...++.+.+.. +.|+-+.. .+.|..||++..
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds-~v~--~~R~h~~~~--~Iv~~slq~~G~~elvSgs~------~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDS-LVC--VYREHNDVE--PIVHLSLQRQGLGELVSGSQ------DGDIQLLDLRMS 1289 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccc-cce--eecccCCcc--cceeEEeecCCCcceeeecc------CCeEEEEecccC
Confidence 6888888888988888743211100 000 111111111 24566666531 23333333 356889999864
Q ss_pred cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceEE-EecCCCCCCcccccCccccCeEEEccCce
Q 020019 135 NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFLS-IISSPLFTPKEWYKNLVGLNGIVYHPDGF 213 (332)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~~-~~~~~~~~~p~~~~~~~~~nGi~~~~dG~ 213 (332)
..+....+..+-+.++-...+.++++-.++.+-+. +.|-.++..|+.+- +..++.|... .......++|+|-.-
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q----~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ----RIGSVSCLAFHPHRL 1364 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccC----cCCCcceeeecchhH
Confidence 33333333211111234677999998889888776 88888888887542 2234555422 123457899999884
Q ss_pred EEEEeCCCCeEEEEeCC
Q 020019 214 LIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 214 Lyva~~~~~~i~~id~~ 230 (332)
+.++-...+.|-.+...
T Consensus 1365 llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred hhhhccCCceEEEeecC
Confidence 44444666666555444
No 380
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=35.27 E-value=1.2e+02 Score=28.19 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=18.6
Q ss_pred cCeEEEccCc---eEEEEeCCCCeEEEEeCCCC
Q 020019 203 LNGIVYHPDG---FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 203 ~nGi~~~~dG---~Lyva~~~~~~i~~id~~~~ 232 (332)
|..+..+.|| .+|+.+. .|.|||||+...
T Consensus 210 ~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~ 241 (335)
T PF05567_consen 210 PAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSA 241 (335)
T ss_dssp EEEE-TTSSSEE-EEEEEET-TSEEEEEE--TT
T ss_pred cEEEeccCCCeEEEEEEEcC-CCcEEEEECCCC
Confidence 3334445666 8999987 578999999853
No 381
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=34.80 E-value=2.4e+02 Score=25.11 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=8.7
Q ss_pred eEEEccCceEEE
Q 020019 205 GIVYHPDGFLIV 216 (332)
Q Consensus 205 Gi~~~~dG~Lyv 216 (332)
.|.+++||++++
T Consensus 142 ~i~I~~dG~I~~ 153 (253)
T PRK12689 142 GIAISPDGTVSV 153 (253)
T ss_pred cEEECCCCeEEE
Confidence 577788887754
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=34.66 E-value=2.1e+02 Score=29.00 Aligned_cols=66 Identities=12% Similarity=0.215 Sum_probs=47.4
Q ss_pred ccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 197 YKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 197 ~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
+++..-|+=|||++.. .+-|+....+.|+.+.+..- .+ ..++.|.+. .-..|-||+|-.|..|.+-
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s-~m-PniQqIqLe--~~ERPKGiCFltdklLLil 401 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPS-SM-PNIQQIQLE--SNERPKGICFLTDKLLLIL 401 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccc-cC-CCeeEEEcc--cCCCCceeeEccCCeEEEE
Confidence 5677889999999998 78887766676766665532 11 256777774 3468999999888776555
No 383
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=34.60 E-value=4.4e+02 Score=25.58 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=57.6
Q ss_pred hheehhhcccCCCceeEEEecCCccc---cceEEcCCCC-EE-EEE-ecCC-------eEEEEECCCCCCCccceeeeEE
Q 020019 22 VAYIISQERANPATHVYHYHSSSFFR---ECAKWDDSGR-RF-IVS-FLDG-------GIGQVAVPDDYPPGTVLEEVTL 88 (332)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~~~~~~~~p---egia~d~~g~-~~-~~~-~~~g-------~I~~vd~~~~~~~~~~~~~~~~ 88 (332)
+|-++....|+...++.....+.-.| -.+...|.-+ ++ |+. ..+| .+|+++..+.++. .+
T Consensus 41 i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWk-------k~ 113 (521)
T KOG1230|consen 41 IAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWK-------KV 113 (521)
T ss_pred HHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecccccee-------Ee
Confidence 34344555566555554443322222 2456666543 33 333 4444 4788887665541 22
Q ss_pred ecccCcC-CCccceEEEeCCCCeEEEEEeCcCC------CccceEEEEECCCCcEEE
Q 020019 89 VKDLELT-GNGSLGLVLDHPRNRLLVVAADVFG------NKYSAVAAYDLSTWNRLF 138 (332)
Q Consensus 89 ~~~~~~~-~~~~~gi~vd~~~g~l~v~~~~~~~------~~~~~l~~~d~~~g~~~~ 138 (332)
. .|..+ .++..-+++.+. |.||+-.+...+ ....-++.||.++.+..+
T Consensus 114 ~-spn~P~pRsshq~va~~s-~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 114 V-SPNAPPPRSSHQAVAVPS-NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred c-cCCCcCCCccceeEEecc-CeEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 2 23222 234556666775 899988654322 123458899998877654
No 384
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=34.16 E-value=2.2e+02 Score=25.14 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=9.7
Q ss_pred CeEEEccCceEEE
Q 020019 204 NGIVYHPDGFLIV 216 (332)
Q Consensus 204 nGi~~~~dG~Lyv 216 (332)
..+.+++||+++.
T Consensus 136 ~~~~I~~dG~i~~ 148 (238)
T PRK12690 136 RSVAVGADGTLSA 148 (238)
T ss_pred ceEEECCCCeEEE
Confidence 3688888888765
No 385
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=33.85 E-value=2.4e+02 Score=25.22 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=10.8
Q ss_pred CeEEEccCceEEEEe
Q 020019 204 NGIVYHPDGFLIVIH 218 (332)
Q Consensus 204 nGi~~~~dG~Lyva~ 218 (332)
..+.+++||++++.+
T Consensus 152 ~~~~i~~dG~i~~~~ 166 (260)
T PRK12817 152 NNFTVDEDGGISVKN 166 (260)
T ss_pred CceEECCCCeEEEec
Confidence 468888888886633
No 386
>PRK13615 lipoprotein LpqB; Provisional
Probab=33.72 E-value=5.1e+02 Score=26.13 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=12.2
Q ss_pred EEccCceEEEEeCCCC
Q 020019 207 VYHPDGFLIVIHTFSG 222 (332)
Q Consensus 207 ~~~~dG~Lyva~~~~~ 222 (332)
.|+++|.+|....++.
T Consensus 379 S~d~~g~vWtv~~g~~ 394 (557)
T PRK13615 379 SLDAQGYVWSTPASDP 394 (557)
T ss_pred cCcCCCCEEEEeCCCc
Confidence 5888889998876554
No 387
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=33.14 E-value=1.5e+02 Score=27.59 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=39.8
Q ss_pred ccccCeEEEccCc-eEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEE
Q 020019 200 LVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVA 266 (332)
Q Consensus 200 ~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va 266 (332)
..+...+.++||| .+..+....-||....+.+. ....++.+ ....-|+++.+||+.-..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-----~~~~~~~p---K~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-----KGYLLPHP---KTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccc-----eeEEeccc---ccCceeEEECCCCceeee
Confidence 4566788999999 77777666777777766654 23334433 234479999999985444
No 388
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=32.50 E-value=2.9e+02 Score=24.70 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=9.3
Q ss_pred eEEEccCceEEEE
Q 020019 205 GIVYHPDGFLIVI 217 (332)
Q Consensus 205 Gi~~~~dG~Lyva 217 (332)
.+.+++||.+++.
T Consensus 150 ~~~i~~dG~I~~~ 162 (263)
T PRK12636 150 SFSIGADGTVSYV 162 (263)
T ss_pred eEEECCCCeEEEE
Confidence 6788888877653
No 389
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=31.71 E-value=1.2e+02 Score=18.39 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=23.0
Q ss_pred CeEEEEEeCcC-CCccceEEEEECCCCcEEEEEe
Q 020019 109 NRLLVVAADVF-GNKYSAVAAYDLSTWNRLFLTQ 141 (332)
Q Consensus 109 g~l~v~~~~~~-~~~~~~l~~~d~~~g~~~~~~~ 141 (332)
+.||+..+... ......+.+||+++++......
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 78999875433 2345678999999877655443
No 390
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.22 E-value=2.9e+02 Score=27.66 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=68.1
Q ss_pred cceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 48 ECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 48 egia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
+.+.+-.+-+ ++++. +|.|+.|||--+.. +. .+..+|.- +.+-+-..+..-+..+.++... ....+.
T Consensus 788 ~~igfL~~lr-~i~Sc-D~giHlWDPFigr~----La--q~~dapk~-~a~~~ikcl~nv~~~iliAgcs----aeSTVK 854 (1034)
T KOG4190|consen 788 HDIGFLADLR-SIASC-DGGIHLWDPFIGRL----LA--QMEDAPKE-GAGGNIKCLENVDRHILIAGCS----AESTVK 854 (1034)
T ss_pred cceeeeeccc-eeeec-cCcceeecccccch----hH--hhhcCccc-CCCceeEecccCcchheeeecc----chhhhe
Confidence 4555555443 44443 57899999875542 22 12223321 1111222332211234444322 124566
Q ss_pred EEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceE
Q 020019 128 AYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFL 183 (332)
Q Consensus 128 ~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~ 183 (332)
.||.+.++....+.+-....++.....+++.+.||...+.-.+|+|..+|.. |+..
T Consensus 855 l~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 855 LFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 7899888776655542211124556678999999877776778999999975 6754
No 391
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=30.82 E-value=5.7e+02 Score=25.76 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=83.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCC-CeEEEEEeCcCCCccc
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPR-NRLLVVAADVFGNKYS 124 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~-g~l~v~~~~~~~~~~~ 124 (332)
=...+.|..+|.++.+...+-+|..||+-..+. + ..+. .+-. .......+-|.. +++.++.. +..
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----l---hsI~-TgHt-aNIFsvKFvP~tnnriv~sgA-----gDk 117 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----L---HSIS-TGHT-ANIFSVKFVPYTNNRIVLSGA-----GDK 117 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecchhcce----e---eeee-cccc-cceeEEeeeccCCCeEEEecc-----Ccc
Confidence 446689999999888778788999999875442 1 2221 1100 134555655543 56555544 245
Q ss_pred eEEEEECCCCcEE-------EEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCceEEEecCCCCCCcc-
Q 020019 125 AVAAYDLSTWNRL-------FLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGEFLSIISSPLFTPKE- 195 (332)
Q Consensus 125 ~l~~~d~~~g~~~-------~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~~~~~~~~~~~~~p~- 195 (332)
.|..||+..-+.- .....- ..-..+.--||.-|+| +.+.+.+..|.|..+|...-.. . .+....+.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~--~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~--c-~p~~~~~~~ 192 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCW--SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV--C-NPDEDCPSI 192 (758)
T ss_pred eEEEEecccccccccccCccchhhhh--hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc--C-CccccccHH
Confidence 7888998642211 000000 0001234457888887 7777777778877777432100 0 00000000
Q ss_pred ---cccCccccCeEEEccCceEEEEeCCCC
Q 020019 196 ---WYKNLVGLNGIVYHPDGFLIVIHTFSG 222 (332)
Q Consensus 196 ---~~~~~~~~nGi~~~~dG~Lyva~~~~~ 222 (332)
..+++...-.++++|...-|.+-.+++
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCC
Confidence 112344566788888873333334443
No 392
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=30.69 E-value=1.8e+02 Score=25.72 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=10.8
Q ss_pred CCccceEECCCCcEEEEe
Q 020019 150 SCADDVTVDAEGNAYVTD 167 (332)
Q Consensus 150 ~~~ndiavd~dG~lyvtd 167 (332)
..|.|+|+..+| +|...
T Consensus 74 g~~lDlAI~G~G-FF~V~ 90 (241)
T PRK12642 74 GNPLDFAVKGDA-WFSFD 90 (241)
T ss_pred CCcceEEECCCc-EEEEE
Confidence 567778887776 44433
No 393
>PLN02193 nitrile-specifier protein
Probab=30.50 E-value=5.2e+02 Score=25.20 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=55.2
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCC-CCCCCCCccceEECCCCcEEEEeCC-----CCeEEEEcCCCce
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSG-PSDGKSCADDVTVDAEGNAYVTDVT-----GSKIWKVGVKGEF 182 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~-~~~~~~~~ndiavd~dG~lyvtd~~-----~~~I~~v~~~g~~ 182 (332)
++||+.-........+.+++||+++.+......+.. |. ......+++ -++.||+---. ...++++|+....
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~--~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT--PRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC--CccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 789987542211224568999998866543322210 11 111223333 34678885321 2457778876332
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCC----CCeEEEEeCCCC
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTF----SGNLFKIDIVDG 232 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~----~~~i~~id~~~~ 232 (332)
=..+..+.. .| ....-.+++.. ++.+|+.-.. .+.++.+|+.+.
T Consensus 306 W~~~~~~~~-~~----~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 306 WFHCSTPGD-SF----SIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEeCCCCCC-CC----CCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCC
Confidence 111111100 01 00111234433 5677775332 256889998865
No 394
>PTZ00486 apyrase Superfamily; Provisional
Probab=30.27 E-value=2.9e+02 Score=25.95 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=32.6
Q ss_pred CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEE----eCCCeEEEEe
Q 020019 211 DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLEL----LSPTKLVVAG 267 (332)
Q Consensus 211 dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~----~~dG~l~va~ 267 (332)
+|.||..|-.+|-||+++.+..+ .+.++-+.........|+.. -.|++|||..
T Consensus 124 ngkLys~DDrTGiVy~i~~~~~~----~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs 180 (352)
T PTZ00486 124 NGKLYGFDDRTGIVYEIDIDKKK----AYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGS 180 (352)
T ss_pred CCEEEEEeCCceEEEEEEcCCCc----EeeEEEEecCCCCCCCCcceeeEEEECCEEEEec
Confidence 58999999999999999866542 34444332112233444422 2667788854
No 395
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=29.89 E-value=4.3e+02 Score=24.02 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=60.9
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCc-EEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCC-eEEE
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWN-RLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGS-KIWK 175 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~-~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~-~I~~ 175 (332)
.+..|..- +|+|.++.+ ++|..|+++..+ +........ ......+.+-.+ .++++|...+ .+++
T Consensus 90 ~V~ai~~~--~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~----~~~i~sl~~~~~-~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 90 PVTAICSF--NGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDS----PFYITSLSVFKN-YILVGDAMKSVSLLR 155 (321)
T ss_dssp -EEEEEEE--TTEEEEEET-------TEEEEEEEETTSSEEEEEEE-B----SSSEEEEEEETT-EEEEEESSSSEEEEE
T ss_pred cceEhhhh--CCEEEEeec-------CEEEEEEccCcccchhhheecc----eEEEEEEecccc-EEEEEEcccCEEEEE
Confidence 56777766 378777664 467777776666 655444421 235555555533 6899998766 4678
Q ss_pred EcCCCc-eEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCCCC-eEEEEeCC
Q 020019 176 VGVKGE-FLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTFSG-NLFKIDIV 230 (332)
Q Consensus 176 v~~~g~-~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~~~-~i~~id~~ 230 (332)
++.+++ ...+..+.. | .....+++-.|+ .+.++|...+ .++++++.
T Consensus 156 ~~~~~~~l~~va~d~~---~------~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 156 YDEENNKLILVARDYQ---P------RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EETTTE-EEEEEEESS----------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEccCCEEEEEEecCC---C------ccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 888765 443333221 1 122344443344 7777777554 23566543
No 396
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=29.15 E-value=5.1e+02 Score=24.68 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=75.9
Q ss_pred ceeEEEecCCccccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEE
Q 020019 35 THVYHYHSSSFFRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVV 114 (332)
Q Consensus 35 ~~~i~~~~~~~~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~ 114 (332)
.+.+.+.+...-...+.|++.+ ..|+..++.+|-++|..++... . +.. .+...+.+.+.+. .+|.++
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~-v~yS~SwDHTIk~WDletg~~~----~--~~~-----~~ksl~~i~~~~~-~~Ll~~ 317 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDAT-VIYSVSWDHTIKVWDLETGGLK----S--TLT-----TNKSLNCISYSPL-SKLLAS 317 (423)
T ss_pred CceEEecccccceeeEEEcCCC-ceEeecccceEEEEEeecccce----e--eee-----cCcceeEeecccc-cceeee
Confidence 4455566655455678888854 5667778999999998877631 1 121 1235678888885 677777
Q ss_pred EeCcCCCccceEEEEECCCCcEE-EEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEc
Q 020019 115 AADVFGNKYSAVAAYDLSTWNRL-FLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVG 177 (332)
Q Consensus 115 ~~~~~~~~~~~l~~~d~~~g~~~-~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~ 177 (332)
... ..-+..|||+++.-. ....+.+. ......+-..|.. ..+++-+..+.+-..|
T Consensus 318 gss-----dr~irl~DPR~~~gs~v~~s~~gH---~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 318 GSS-----DRHIRLWDPRTGDGSVVSQSLIGH---KNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred cCC-----CCceeecCCCCCCCceeEEeeecc---hhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 542 234678999886422 12334321 3466677777765 4777777666655544
No 397
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=28.68 E-value=1.5e+02 Score=26.49 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=9.7
Q ss_pred CeEEEccCceEEE
Q 020019 204 NGIVYHPDGFLIV 216 (332)
Q Consensus 204 nGi~~~~dG~Lyv 216 (332)
..+.+++||+++.
T Consensus 147 ~~~~i~~dG~i~~ 159 (262)
T PRK12691 147 TSITINASGQVSA 159 (262)
T ss_pred ceEEECCCCEEEE
Confidence 3688888887765
No 398
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=28.60 E-value=3.4e+02 Score=24.84 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=31.5
Q ss_pred CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE----EEeCCCeEEEEeC
Q 020019 211 DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL----ELLSPTKLVVAGN 268 (332)
Q Consensus 211 dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi----~~~~dG~l~va~~ 268 (332)
+|.||..|-.+|-||+|.-. . .+..+-+.........|+ +.-.|+.|||...
T Consensus 63 ngkLys~DDrTGiVyeI~~~-~-----~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs~ 118 (291)
T PF06079_consen 63 NGKLYSFDDRTGIVYEIKGD-K-----AVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGSI 118 (291)
T ss_dssp TTEEEEEETTT-EEEEEETT-E-----EEEEEE-BSTTTTESSB----EEEEETTEEEEE--
T ss_pred CCEEeeeeCCCceEEEEeCC-c-----eeceEEEeCCCCCccccccceeeEEeCCeeeeccC
Confidence 68999999999999999755 1 455554432233345565 3336788998753
No 399
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=28.25 E-value=6.2e+02 Score=25.34 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=70.9
Q ss_pred cceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEe--CCCCeEEEEcCCCceEEEecCCCCCCcccccCc
Q 020019 123 YSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTD--VTGSKIWKVGVKGEFLSIISSPLFTPKEWYKNL 200 (332)
Q Consensus 123 ~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd--~~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~ 200 (332)
...|+.++.+ |+ ...+++. +.+-.+|+...++|+=|... ..-..+-.+|.+|+..--+ .+.|
T Consensus 250 Eq~Lyll~t~-g~-s~~V~L~----k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df----~egp------ 313 (566)
T KOG2315|consen 250 EQTLYLLATQ-GE-SVSVPLL----KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF----PEGP------ 313 (566)
T ss_pred cceEEEEEec-Cc-eEEEecC----CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC----CCCC------
Confidence 3467777776 33 2335552 23456889999999644433 3356788888888854211 1122
Q ss_pred cccCeEEEccCc-eEEEEeCC--CCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 201 VGLNGIVYHPDG-FLIVIHTF--SGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 201 ~~~nGi~~~~dG-~Lyva~~~--~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
-|-+-|+|.| .|.++-.+ .|.+-.+|..+.+ .+..+... ...=....|||+.+++.-.
T Consensus 314 --RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~-----~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 314 --RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAA-----NTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred --ccceEECCCCCEEEEeecCCCCCceEEEeccchh----hccccccC-----CceEEEEcCCCcEEEEEec
Confidence 3789999999 66666664 3566667766542 23222221 1112345599998887543
No 400
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=28.22 E-value=1.1e+02 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=22.5
Q ss_pred cCeEEEccCceEEEEeCCCCeEEEEeC
Q 020019 203 LNGIVYHPDGFLIVIHTFSGNLFKIDI 229 (332)
Q Consensus 203 ~nGi~~~~dG~Lyva~~~~~~i~~id~ 229 (332)
..-.+++.||.+.+.....+.|||+|.
T Consensus 356 VRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 356 VRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 456789999977777888899999984
No 401
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=27.82 E-value=3.4e+02 Score=24.21 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=10.1
Q ss_pred eEEEccCceEEEE
Q 020019 205 GIVYHPDGFLIVI 217 (332)
Q Consensus 205 Gi~~~~dG~Lyva 217 (332)
.+.+++||++++.
T Consensus 148 ~~~i~~dG~I~~~ 160 (261)
T PRK12693 148 SITIGTDGTVSVT 160 (261)
T ss_pred eEEECCCCeEEEe
Confidence 6888888888653
No 402
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=27.40 E-value=5.2e+02 Score=24.16 Aligned_cols=86 Identities=21% Similarity=0.175 Sum_probs=45.6
Q ss_pred CCccccceEEcCCCCEEEEE---ecCCe--EEEEECCCCCCC---ccce------eeeEEecccCcCCCccceEEEeCCC
Q 020019 43 SSFFRECAKWDDSGRRFIVS---FLDGG--IGQVAVPDDYPP---GTVL------EEVTLVKDLELTGNGSLGLVLDHPR 108 (332)
Q Consensus 43 ~~~~pegia~d~~g~~~~~~---~~~g~--I~~vd~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~gi~vd~~~ 108 (332)
.|+.-||++++++ ++|++- ...|. |..++....... .... -...++ ++.|.+...|..+.
T Consensus 168 nG~nIEGlA~~~~-~l~lGfRgPv~~g~AlIv~v~~~~~~~~~~~~~~~~~~g~~~~~~~L---dL~G~GIRdl~~~~-- 241 (330)
T PF12275_consen 168 NGFNIEGLAVDPD-RLYLGFRGPVLRGWALIVPVENPDAVFETLAAAPFGEDGPFYRPHFL---DLGGLGIRDLCYDG-- 241 (330)
T ss_pred CCCCeeeeEecCC-eEEEEeeCCCCCCeEEEEEEeCccccccccccCccccCCcccceEEE---ECCCCcEeeeeeCC--
Confidence 4788899999996 778765 22343 566654322110 0000 000111 23345677887776
Q ss_pred CeEEEEEeC-cCCCccceEEEEECCCC
Q 020019 109 NRLLVVAAD-VFGNKYSAVAAYDLSTW 134 (332)
Q Consensus 109 g~l~v~~~~-~~~~~~~~l~~~d~~~g 134 (332)
+.+||..+. .......+++.|+....
T Consensus 242 ~~~lILAGp~~~~~g~~~l~~W~g~~~ 268 (330)
T PF12275_consen 242 DDLLILAGPTMDLDGPFRLYRWSGAPN 268 (330)
T ss_pred CcEEEEeCCCCCCCCCEEEEEEeCCCc
Confidence 355555443 22234557888987654
No 403
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=26.77 E-value=2.7e+02 Score=24.95 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=10.2
Q ss_pred CeEEEccCceEEE
Q 020019 204 NGIVYHPDGFLIV 216 (332)
Q Consensus 204 nGi~~~~dG~Lyv 216 (332)
..|.+++||+++.
T Consensus 147 ~~i~I~~dG~I~~ 159 (262)
T PRK12692 147 TQVTINESGQVFA 159 (262)
T ss_pred cceEECCCCEEEE
Confidence 3688888998865
No 404
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=26.52 E-value=6.2e+02 Score=24.78 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=43.3
Q ss_pred eEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCC-CcEEEEeCC--C-----Ce
Q 020019 101 GLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAE-GNAYVTDVT--G-----SK 172 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~d-G~lyvtd~~--~-----~~ 172 (332)
.+... .|+||+... .+..+.+|+.|-+-+....+.+.-.+..+.-.-.+||+ |.+|.-... . -.
T Consensus 125 ~v~~~--~g~llAl~E------~g~p~~lDp~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~ 196 (486)
T PF03055_consen 125 NVIPH--GGRLLALWE------GGPPYELDPDTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLT 196 (486)
T ss_dssp EEEEE--TTEEEEE-T------TSEEEEEETTTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEE
T ss_pred eeEEE--CCEEEEEEc------CCCCEEechhHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEE
Confidence 34444 388888853 35678899988776666666532223456667789985 887653322 1 24
Q ss_pred EEEEcCCCceE
Q 020019 173 IWKVGVKGEFL 183 (332)
Q Consensus 173 I~~v~~~g~~~ 183 (332)
+++++++|+..
T Consensus 197 ~~~~~~~g~~~ 207 (486)
T PF03055_consen 197 VYEIDPDGKKI 207 (486)
T ss_dssp EEEE-TTSEEE
T ss_pred EEEEcCcccee
Confidence 88999999543
No 405
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=26.37 E-value=2.3e+02 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=9.4
Q ss_pred CeEEEccCceEEE
Q 020019 204 NGIVYHPDGFLIV 216 (332)
Q Consensus 204 nGi~~~~dG~Lyv 216 (332)
..|.+++||++++
T Consensus 154 ~~i~i~~dG~i~~ 166 (256)
T PRK12818 154 GKFSTDADGNISL 166 (256)
T ss_pred CCceECCCCeEEE
Confidence 3677888887765
No 406
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=25.81 E-value=4.9e+02 Score=25.80 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=46.7
Q ss_pred CeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCC
Q 020019 66 GGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGP 145 (332)
Q Consensus 66 g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~ 145 (332)
+.|+.+|+++++. +... .+.+.+-.++...++ ..+-|+.. .++..-+|..+|+++-++.......
T Consensus 375 s~LvllD~~tg~~---------l~~S-~~~~Ir~r~~~~~~~-~~vaI~g~--~G~~~ikLvlid~~tLev~kes~~~-- 439 (489)
T PF05262_consen 375 SELVLLDSDTGDT---------LKRS-PVNGIRGRTFYERED-DLVAIAGC--SGNAAIKLVLIDPETLEVKKESEDE-- 439 (489)
T ss_pred eeEEEEeCCCCce---------eccc-ccceeccceeEEcCC-CEEEEecc--CCchheEEEecCcccceeeeecccc--
Confidence 7899999987751 2211 122234456666653 43334322 2222334555577766655433221
Q ss_pred CCCCCCccceEECCCCcEEEEe-CC--CCeEEEEcCC
Q 020019 146 SDGKSCADDVTVDAEGNAYVTD-VT--GSKIWKVGVK 179 (332)
Q Consensus 146 ~~~~~~~ndiavd~dG~lyvtd-~~--~~~I~~v~~~ 179 (332)
.+.-.-|.++ .+++|+.- .. ...|-||+.+
T Consensus 440 ---i~~~S~l~~~-~~~iyaVv~~~~g~~~L~rF~~~ 472 (489)
T PF05262_consen 440 ---ISWQSSLIVD-GQMIYAVVKKDNGKWYLGRFDSN 472 (489)
T ss_pred ---ccccCceEEc-CCeEEEEEEcCCCeEEEeecCcc
Confidence 1111235555 44688443 22 2346677766
No 407
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=25.24 E-value=6.6e+02 Score=24.68 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=56.3
Q ss_pred eEEEEECCCCCCCccceeeeEEecccCc--CCCccceEEEeCCCCeEEEEEeCcCC-CccceEEEEECCCCcEEEEEecC
Q 020019 67 GIGQVAVPDDYPPGTVLEEVTLVKDLEL--TGNGSLGLVLDHPRNRLLVVAADVFG-NKYSAVAAYDLSTWNRLFLTQLS 143 (332)
Q Consensus 67 ~I~~vd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gi~vd~~~g~l~v~~~~~~~-~~~~~l~~~d~~~g~~~~~~~l~ 143 (332)
.|+.+|..+.++ .++...+. +...-..+++.. .+|||.-+.... ...+.+++||+++.+... +...
T Consensus 140 ~l~~~d~~t~~W--------~~l~~~~~~P~~r~~Hs~~~~g--~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~-~~~~ 208 (482)
T KOG0379|consen 140 ELHSLDLSTRTW--------SLLSPTGDPPPPRAGHSATVVG--TKLVVFGGIGGTGDSLNDLHIYDLETSTWSE-LDTQ 208 (482)
T ss_pred heEeccCCCCcE--------EEecCcCCCCCCcccceEEEEC--CEEEEECCccCcccceeeeeeecccccccee-cccC
Confidence 689999887775 22211111 112345666664 578887543222 246789999999876332 3333
Q ss_pred CCCCCCCCccceEECCCCcEEEE------eCCCCeEEEEcCCC
Q 020019 144 GPSDGKSCADDVTVDAEGNAYVT------DVTGSKIWKVGVKG 180 (332)
Q Consensus 144 ~~~~~~~~~ndiavd~dG~lyvt------d~~~~~I~~v~~~g 180 (332)
++.+.....+.+++..+ .+|+. +...+-++.+|...
T Consensus 209 g~~P~pR~gH~~~~~~~-~~~v~gG~~~~~~~l~D~~~ldl~~ 250 (482)
T KOG0379|consen 209 GEAPSPRYGHAMVVVGN-KLLVFGGGDDGDVYLNDVHILDLST 250 (482)
T ss_pred CCCCCCCCCceEEEECC-eEEEEeccccCCceecceEeeeccc
Confidence 22222234566666654 45552 23345677888764
No 408
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=24.67 E-value=4.7e+02 Score=22.81 Aligned_cols=108 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred ceEEcCCCCEEEEEec---CCeEEEEECCCCCCCccceeeeEEeccc--CcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 49 CAKWDDSGRRFIVSFL---DGGIGQVAVPDDYPPGTVLEEVTLVKDL--ELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 49 gia~d~~g~~~~~~~~---~g~I~~vd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
.++.+++|++++.... ....+..+.++++ +|-... ..+.....-..+...+|+++++.+....+..
T Consensus 163 ~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~---------TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~ 233 (275)
T PF13088_consen 163 SIVELPDGRLLAVFRTEGNDDIYISRSTDGGR---------TWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSN 233 (275)
T ss_dssp EEEEETTSEEEEEEEECSSTEEEEEEESSTTS---------S-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEE
T ss_pred EEEECCCCcEEEEEEccCCCcEEEEEECCCCC---------cCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCc
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEE
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYV 165 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyv 165 (332)
-.|..-.-...+......+.........--+++..+||.|||
T Consensus 234 l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 234 LSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred eEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
No 409
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=24.60 E-value=5.4e+02 Score=23.41 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred eEECCCCcEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCC
Q 020019 155 VTVDAEGNAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 155 iavd~dG~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~ 232 (332)
+++..||++...--..-.-.|-..| +....-...+.-+-|.+. =++|+||++|.+....+|.|..+|+.+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWR-------kl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWR-------KLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchhe-------EEEECCCCcEEEEEcCCCeEEEEecccc
Q ss_pred CCccceeEEEE
Q 020019 233 VGEGEEIKLIR 243 (332)
Q Consensus 233 ~~~~~~~~~v~ 243 (332)
....+.
T Consensus 76 -----~lf~I~ 81 (282)
T PF15492_consen 76 -----ELFVIP 81 (282)
T ss_pred -----eeEEcC
No 410
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=24.21 E-value=7.9e+02 Score=25.40 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred cceEEEeCCCC-eEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 99 SLGLVLDHPRN-RLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 99 ~~gi~vd~~~g-~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
++++...|+ + .|.-+.+| +.--++.=|.++|-.+-..++..-+......-+..+.++++.+++....|..+...
T Consensus 270 V~sv~W~p~-~~~LLSASaD----ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 270 VYSVWWHPE-GLDLLSASAD----KSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred eEEEEEccc-hhhheecccC----cceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Q ss_pred CCCceEEEecCCCCCCcccccCccccCeEEEccCc--eEEEEeCCCCeEE
Q 020019 178 VKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG--FLIVIHTFSGNLF 225 (332)
Q Consensus 178 ~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG--~Lyva~~~~~~i~ 225 (332)
.+-...+....+..- ...+..+|+++|.| .|-++.-.+-||+
T Consensus 345 --t~d~~~w~~~~~iSG----H~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 345 --TKDKTFWTQEPVISG----HVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred --ccCccceeecccccc----ccccceeeeecCCCCEEEEeccccceeee
No 411
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=24.11 E-value=5.7e+02 Score=23.56 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEECCCC-cEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcc--------
Q 020019 128 AYDLSTW-NRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKE-------- 195 (332)
Q Consensus 128 ~~d~~~g-~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~-------- 195 (332)
+||+++| ......+| -.--.-..||++..+| ++|.+-...|.|..||.. ..-...++.+....|-
T Consensus 177 iWdie~~~~~~vkTQL---IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQL---IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEeeccccceeeEE---EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Q ss_pred -----------------------------cccCccccCeEEEccCc-eEEEEeCCCCeEEEEeCC
Q 020019 196 -----------------------------WYKNLVGLNGIVYHPDG-FLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 196 -----------------------------~~~~~~~~nGi~~~~dG-~Lyva~~~~~~i~~id~~ 230 (332)
........|||+|.|.. .-+-+..+..+..-+|+.
T Consensus 254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
No 412
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=24.10 E-value=1.9e+02 Score=26.97 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=33.5
Q ss_pred ceEECCCCcEEEEeCCCCeEEEEcCCCc--eEEEecCCCCC------CcccccCccccCeEEEccCceEEEEeCC
Q 020019 154 DVTVDAEGNAYVTDVTGSKIWKVGVKGE--FLSIISSPLFT------PKEWYKNLVGLNGIVYHPDGFLIVIHTF 220 (332)
Q Consensus 154 diavd~dG~lyvtd~~~~~I~~v~~~g~--~~~~~~~~~~~------~p~~~~~~~~~nGi~~~~dG~Lyva~~~ 220 (332)
.++.-+++++||+.-....|.|+..... ...+.....|. -|.......-.-|+++ .+|+||++-+.
T Consensus 4 a~~~~~d~~l~va~DE~~~i~rL~~~~~~~~~~~~~~~~~~l~~~~~lp~~~~~e~DiEGla~-~~gyly~igSH 77 (330)
T PF12275_consen 4 AAVQLPDGRLWVASDETANIERLTLDDAGGEDRFGDHASFPLADFFDLPGPKDKEIDIEGLAY-ADGYLYVIGSH 77 (330)
T ss_pred cceEcCCCeEEEEecCCCCeeEEEecCCCcccccccccccccccccccCCCCCcccchhhhhc-cCCeEEEEccC
Confidence 4566778888887655555555443211 11111111111 0110112234568898 57899998663
No 413
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.93 E-value=8e+02 Score=25.20 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=87.8
Q ss_pred cccceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccce
Q 020019 46 FRECAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSA 125 (332)
Q Consensus 46 ~pegia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~ 125 (332)
+...++.--+|+.+++...+-+|-.|+...... +-. .++-.+. .-+..+++-..++.++ +.++. ..+
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---~c~-stir~H~----DYVkcla~~ak~~~lv-aSgGL----D~~ 141 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---FCM-STIRTHK----DYVKCLAYIAKNNELV-ASGGL----DRK 141 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcc---hhH-hhhhccc----chheeeeecccCceeE-EecCC----Ccc
Confidence 445566666777676665566666666543210 000 0111111 1456777733335544 44442 357
Q ss_pred EEEEECCCCcE--EEEEe-c--CC-CCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCCCceE--EEecCCCCCCcccc
Q 020019 126 VAAYDLSTWNR--LFLTQ-L--SG-PSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVKGEFL--SIISSPLFTPKEWY 197 (332)
Q Consensus 126 l~~~d~~~g~~--~~~~~-l--~~-~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~g~~~--~~~~~~~~~~p~~~ 197 (332)
|+.||.++|.. +.... + .. +......-..+|..+.|.++++-...+.|..+|+..... .+.+
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG---------- 211 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG---------- 211 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec----------
Confidence 99999998732 22111 1 00 001123445577777788888877778888888874322 1111
Q ss_pred cCccccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 198 KNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 198 ~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
...+..-|.+++||+-.++....+.|-.+++.
T Consensus 212 -HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 212 -HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred -cccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 12345578889999555555667777667765
No 414
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=23.46 E-value=4.4e+02 Score=23.36 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=9.7
Q ss_pred CeEEEccCceEEEE
Q 020019 204 NGIVYHPDGFLIVI 217 (332)
Q Consensus 204 nGi~~~~dG~Lyva 217 (332)
..+.+++||++++.
T Consensus 134 ~~i~I~~dG~I~~~ 147 (246)
T PRK12640 134 AKITIGADGTISAL 147 (246)
T ss_pred CCEEECCCCEEEEe
Confidence 36778888877653
No 415
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=23.44 E-value=5.2e+02 Score=22.82 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=32.5
Q ss_pred CceEEEEeCCCCeEEEEeCCCCCCccceeEEEEe--cCCCC--CCCCeEEEeCCCeEEEEeC
Q 020019 211 DGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRV--AGGPL--SFGDGLELLSPTKLVVAGN 268 (332)
Q Consensus 211 dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~--~g~~~--~~pdGi~~~~dG~l~va~~ 268 (332)
+|.++++-+...+|..+|+.-.. -+..+.. .+..+ +....+++||.|+|.+++.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 46777777777777666666331 2222221 11122 3456789999999999974
No 416
>PLN02153 epithiospecifier protein
Probab=23.42 E-value=5.8e+02 Score=23.39 Aligned_cols=35 Identities=17% Similarity=0.400 Sum_probs=20.0
Q ss_pred eEEEeCCCCeEEEEEeCcCC------CccceEEEEECCCCcEE
Q 020019 101 GLVLDHPRNRLLVVAADVFG------NKYSAVAAYDLSTWNRL 137 (332)
Q Consensus 101 gi~vd~~~g~l~v~~~~~~~------~~~~~l~~~d~~~g~~~ 137 (332)
.+++.. +++||..+.... .....+.+||+++.+..
T Consensus 132 ~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 132 SMASDE--NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred EEEEEC--CEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 445443 789987542110 01245788999876543
No 417
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.23 E-value=4.8e+02 Score=27.07 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=79.3
Q ss_pred cceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCC---CCeEEE
Q 020019 99 SLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVT---GSKIWK 175 (332)
Q Consensus 99 ~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~---~~~I~~ 175 (332)
...+.++.+ -.|..+... .+.|.+||++.++... .|.+ ....+--+.+.|=| -|++.+. +-.||-
T Consensus 73 IeSl~f~~~-E~Llaagsa-----sgtiK~wDleeAk~vr--tLtg---h~~~~~sv~f~P~~-~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 73 IESLTFDTS-ERLLAAGSA-----SGTIKVWDLEEAKIVR--TLTG---HLLNITSVDFHPYG-EFFASGSTDTDLKIWD 140 (825)
T ss_pred ceeeecCcc-hhhhccccc-----CCceeeeehhhhhhhh--hhhc---cccCcceeeeccce-EEeccccccccceehh
Confidence 357888876 555555331 3468889998776543 2311 11223334566655 3332111 112222
Q ss_pred EcCCCceEEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCCCeEEEEeCCCCCCccceeEEEEecCCCCCCCCeE
Q 020019 176 VGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIVDGVGEGEEIKLIRVAGGPLSFGDGL 255 (332)
Q Consensus 176 v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~~~~~~~~~~~~v~~~g~~~~~pdGi 255 (332)
+...|-...+-. .....+-+.|+|+|.+.+.-...+.+-.+|+..|+ ..+.++........++
T Consensus 141 ~Rk~Gc~~~~~s-----------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk----~~~ef~~~e~~v~sle-- 203 (825)
T KOG0267|consen 141 IRKKGCSHTYKS-----------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK----LSKEFKSHEGKVQSLE-- 203 (825)
T ss_pred hhccCceeeecC-----------CcceeEEEeecCCCceeeccCCcceeeeecccccc----cccccccccccccccc--
Confidence 222222111110 01235678999999544433344666666766553 3333331100111222
Q ss_pred EEeCCCeEEEEeCCceEEEEcCCCceEEEEEeeecCCCcccceEEEE-ECCeEE
Q 020019 256 ELLSPTKLVVAGNPSARLVESSDGWETAAVVAKFSGPVHRLATAATV-KDGRVY 308 (332)
Q Consensus 256 ~~~~dG~l~va~~~~~~~v~~~dg~~~~~~~~~~~~~~~~~pt~va~-~~g~ly 308 (332)
+++-.-|...+.. .+.+..-|. ++.+++.... +....+-+.+| .+++..
T Consensus 204 -~hp~e~Lla~Gs~-d~tv~f~dl-etfe~I~s~~-~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 204 -FHPLEVLLAPGSS-DRTVRFWDL-ETFEVISSGK-PETDGVRSLAFNPDGKIV 253 (825)
T ss_pred -cCchhhhhccCCC-Cceeeeecc-ceeEEeeccC-CccCCceeeeecCCceee
Confidence 4443333333322 344555566 4444444332 22344556666 444433
No 418
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=23.16 E-value=9.1e+02 Score=27.92 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred ceEEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEE
Q 020019 49 CAKWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAA 128 (332)
Q Consensus 49 gia~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~ 128 (332)
|+.-+++|..| -+.+++||++++.... |...|+.....-.-|....+ |.||.=+.+ ..
T Consensus 367 gv~~~~~ge~l--RlHd~~LY~~d~~~~~----------Wk~~~~~~d~~~S~Ls~qgd-G~lYAk~~~---------~l 424 (1774)
T PF11725_consen 367 GVHTDPDGEQL--RLHDDRLYQFDPNTAR----------WKPPPDKSDTPFSSLSRQGD-GKLYAKDDD---------TL 424 (1774)
T ss_pred ccccCCCCCeE--EeecCceeeeccccce----------ecCCCCcccchhhhhcccCC-CceEecCCC---------ce
Q ss_pred EECCCCcEEEEEecCCCCCCCCCccceEECCCCcE-EEEeCCCCeEEEEcCCCc---------eEEEecCCCCCCccccc
Q 020019 129 YDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNA-YVTDVTGSKIWKVGVKGE---------FLSIISSPLFTPKEWYK 198 (332)
Q Consensus 129 ~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~l-yvtd~~~~~I~~v~~~g~---------~~~~~~~~~~~~p~~~~ 198 (332)
.|+.++.. +.....-...+.+.++|++ ..++.....+....++-- ...-+.+
T Consensus 425 ~nLSs~~~--------~~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d---------- 486 (1774)
T PF11725_consen 425 VNLSSGQM--------SEAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD---------- 486 (1774)
T ss_pred eecCCCCc--------chhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccC----------
Q ss_pred CccccCeEEEccCceEEEEeCCCCeEEEEeCC
Q 020019 199 NLVGLNGIVYHPDGFLIVIHTFSGNLFKIDIV 230 (332)
Q Consensus 199 ~~~~~nGi~~~~dG~Lyva~~~~~~i~~id~~ 230 (332)
+......|.+++| +|||+|. .|++|.-++.
T Consensus 487 G~a~A~~VgLs~d-rLFvADs-eGkLYsa~l~ 516 (1774)
T PF11725_consen 487 GKAQAQSVGLSND-RLFVADS-EGKLYSADLP 516 (1774)
T ss_pred CchhhhheeecCC-eEEEEeC-CCCEEecccc
No 419
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=5.2e+02 Score=26.04 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=57.2
Q ss_pred ceEECCCCcEEEE---eC--CCCeEEEEcCCCceEEEecCCCCCCcccccCccccCeEEEccCc-eEEEEeCC--CCeEE
Q 020019 154 DVTVDAEGNAYVT---DV--TGSKIWKVGVKGEFLSIISSPLFTPKEWYKNLVGLNGIVYHPDG-FLIVIHTF--SGNLF 225 (332)
Q Consensus 154 diavd~dG~lyvt---d~--~~~~I~~v~~~g~~~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG-~Lyva~~~--~~~i~ 225 (332)
.++.+|.|+=+.. +. .+-+.|.+...++...++ ..+ .....|-+-++|.| .+.++.-. .+.++
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV--k~~-------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV--KEL-------DKKFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh--hhh-------cccccceEEEcCCCcEEEEEEecccccceE
Confidence 3677888864432 22 233455555433222111 011 11457899999999 77776655 56788
Q ss_pred EEeCCCCCCccceeEEEEecCCCCCCCCeEEEeCCCeEEEEeCC
Q 020019 226 KIDIVDGVGEGEEIKLIRVAGGPLSFGDGLELLSPTKLVVAGNP 269 (332)
Q Consensus 226 ~id~~~~~~~~~~~~~v~~~g~~~~~pdGi~~~~dG~l~va~~~ 269 (332)
-+|.+-. ..+.+..+ .......+..||-|+.+++...
T Consensus 521 F~D~~~a-----~~k~~~~~--eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 521 FYDTDYA-----DLKDTASP--EHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred EEecchh-----hhhhccCc--cccccccceECCCCCEEEEeee
Confidence 8888732 12222222 2234456889999988888644
No 420
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=22.74 E-value=6.4e+02 Score=23.67 Aligned_cols=124 Identities=10% Similarity=0.161 Sum_probs=68.2
Q ss_pred cccceEEcC--CCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCcc
Q 020019 46 FRECAKWDD--SGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKY 123 (332)
Q Consensus 46 ~pegia~d~--~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~ 123 (332)
...++.+.. ..+.+++...+|.|..+|....... .+..+-..|+ +.-..+...- +++++.+..... ...
T Consensus 72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~----a~~~~~~~~~---~~f~~ld~nc-k~~ii~~GtE~~-~s~ 142 (376)
T KOG1188|consen 72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES----ARISWTQQSG---TPFICLDLNC-KKNIIACGTELT-RSD 142 (376)
T ss_pred cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----hheeccCCCC---CcceEeeccC-cCCeEEeccccc-cCc
Confidence 345677655 4566666667899998887644310 1112222221 1223444443 367666643221 134
Q ss_pred ceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCCCc
Q 020019 124 SAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVKGE 181 (332)
Q Consensus 124 ~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~g~ 181 (332)
..|+.||.+..+... ..+.... .--...+.+.|.. ++.++-+..|-|-.||.++.
T Consensus 143 A~v~lwDvR~~qq~l-~~~~eSH--~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 143 ASVVLWDVRSEQQLL-RQLNESH--NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEEEEEEeccccchh-hhhhhhc--cCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 578889987644311 1111000 1123347788875 79999999999888887643
No 421
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=22.37 E-value=8e+02 Score=24.62 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEEEEE
Q 020019 51 KWDDSGRRFIVSFLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYD 130 (332)
Q Consensus 51 a~d~~g~~~~~~~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d 130 (332)
++.-++.++|+...++.|..+++..++ .+. ++..... .+..+.++.. .++|=...+ ..|.+||
T Consensus 336 ~v~~~~~~lvsgs~d~~v~VW~~~~~~----cl~--sl~gH~~----~V~sl~~~~~-~~~~Sgs~D------~~IkvWd 398 (537)
T KOG0274|consen 336 CVQLDEPLLVSGSYDGTVKVWDPRTGK----CLK--SLSGHTG----RVYSLIVDSE-NRLLSGSLD------TTIKVWD 398 (537)
T ss_pred EEEecCCEEEEEecCceEEEEEhhhce----eee--eecCCcc----eEEEEEecCc-ceEEeeeec------cceEeec
Q ss_pred CCCC-cEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEcCC-CceEEEecC-CCCCCcccccCccccCeEE
Q 020019 131 LSTW-NRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVGVK-GEFLSIISS-PLFTPKEWYKNLVGLNGIV 207 (332)
Q Consensus 131 ~~~g-~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~~~-g~~~~~~~~-~~~~~p~~~~~~~~~nGi~ 207 (332)
+++. +-....... ....+++.+. ++.+++.+..+.|...|.. ++....+.. ... ++.
T Consensus 399 l~~~~~c~~tl~~h-----~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~-------------~v~ 458 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGH-----TSLVSSLLLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVG-------------GVS 458 (537)
T ss_pred CCchhhhhhhhcCC-----cccccccccc--cceeEeccccccEEEeecccCceeeeeccCCcc-------------cEE
Q ss_pred EccCc-eEEEEeCCCCeEEEEeCCCC
Q 020019 208 YHPDG-FLIVIHTFSGNLFKIDIVDG 232 (332)
Q Consensus 208 ~~~dG-~Lyva~~~~~~i~~id~~~~ 232 (332)
+-..+ ...++....+++...|+..+
T Consensus 459 ~l~~~~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 459 ALALGKEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EeecCcceEEEEecCCeeEEEecccC
No 422
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=21.15 E-value=6.3e+02 Score=22.92 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=55.0
Q ss_pred CeEEEEEeCcCCCccceEEEEECCCCcEE-EEEecCCCCCCCCCccceEECCCCcEEEEeC-----CCCeEEEEcCCCce
Q 020019 109 NRLLVVAADVFGNKYSAVAAYDLSTWNRL-FLTQLSGPSDGKSCADDVTVDAEGNAYVTDV-----TGSKIWKVGVKGEF 182 (332)
Q Consensus 109 g~l~v~~~~~~~~~~~~l~~~d~~~g~~~-~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~-----~~~~I~~v~~~g~~ 182 (332)
+.||+..+.........+..||+.+.+.. ....++. .+..+.+..+.--++.||+.-. ....++++|+...
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~--lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~- 149 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGN--LPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ- 149 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC--CCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC-
Confidence 78888854221112356888998776542 1122321 1112222222223568998632 2357889998633
Q ss_pred EEEecCCCCCCcccccCccccCeEEEccCceEEEEeCCC----CeEEEEeCCCC
Q 020019 183 LSIISSPLFTPKEWYKNLVGLNGIVYHPDGFLIVIHTFS----GNLFKIDIVDG 232 (332)
Q Consensus 183 ~~~~~~~~~~~p~~~~~~~~~nGi~~~~dG~Lyva~~~~----~~i~~id~~~~ 232 (332)
.|...+.++.+ ......+..-++.|||.-..+ ..++++|+++.
T Consensus 150 -~W~~~~~~p~~------~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 -EWFELPDFPGE------PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred -CeeECCCCCCC------CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 12111112110 011122223356888864322 23678888765
No 423
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.79 E-value=7.8e+02 Score=23.91 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=84.1
Q ss_pred ceEEcCCCCEEEEE-ecCCeEEEEECCCCCCCccceeeeEEecccCcCCCccceEEEeCCCCeEEEEEeCcCCCccceEE
Q 020019 49 CAKWDDSGRRFIVS-FLDGGIGQVAVPDDYPPGTVLEEVTLVKDLELTGNGSLGLVLDHPRNRLLVVAADVFGNKYSAVA 127 (332)
Q Consensus 49 gia~d~~g~~~~~~-~~~g~I~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~ 127 (332)
.+++...-+-.+.+ ..+.+|-.||..+++.. . ++. . .+..++.+.+++....+.+... + .+.+.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~----~--s~~-~---~~k~Vq~l~wh~~~p~~LLsGs-~----D~~V~ 312 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPK----S--SIT-H---HGKKVQTLEWHPYEPSVLLSGS-Y----DGTVA 312 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcc----e--ehh-h---cCCceeEEEecCCCceEEEecc-c----cceEE
Confidence 45565554444444 66788999998888741 1 222 1 1235778888886555444432 1 24566
Q ss_pred EEECC-CCcEEEEEecCCCCCCCCCccceEECCCC-cEEEEeCCCCeEEEEcCC--CceEEEecCCCCCCcccccCcccc
Q 020019 128 AYDLS-TWNRLFLTQLSGPSDGKSCADDVTVDAEG-NAYVTDVTGSKIWKVGVK--GEFLSIISSPLFTPKEWYKNLVGL 203 (332)
Q Consensus 128 ~~d~~-~g~~~~~~~l~~~~~~~~~~ndiavd~dG-~lyvtd~~~~~I~~v~~~--g~~~~~~~~~~~~~p~~~~~~~~~ 203 (332)
.+|.+ ....-..+.+.+.. --+++++.. +.++..+..|.|+.+|.. |+....+.. .....
T Consensus 313 l~D~R~~~~s~~~wk~~g~V------Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A----------Hd~~I 376 (463)
T KOG0270|consen 313 LKDCRDPSNSGKEWKFDGEV------EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA----------HDDEI 376 (463)
T ss_pred eeeccCccccCceEEeccce------EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe----------ccCCc
Confidence 67765 12221223332211 127777764 456666777888888754 443322211 11235
Q ss_pred CeEEEccCc-eEEEEeCCCCe--EEEEeCCCC
Q 020019 204 NGIVYHPDG-FLIVIHTFSGN--LFKIDIVDG 232 (332)
Q Consensus 204 nGi~~~~dG-~Lyva~~~~~~--i~~id~~~~ 232 (332)
.||+++..- .+.++...... +|.++.+.+
T Consensus 377 Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 377 SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 689998775 67777665554 456655544
No 424
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=20.06 E-value=7.8e+02 Score=23.63 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=44.2
Q ss_pred ccceEEEeCCCCeEEEEEeCcCCCccceEEEEECCCCcEEEEEecCCCCCCCCCccceEECCCCcEEEEeCCCCeEEEEc
Q 020019 98 GSLGLVLDHPRNRLLVVAADVFGNKYSAVAAYDLSTWNRLFLTQLSGPSDGKSCADDVTVDAEGNAYVTDVTGSKIWKVG 177 (332)
Q Consensus 98 ~~~gi~vd~~~g~l~v~~~~~~~~~~~~l~~~d~~~g~~~~~~~l~~~~~~~~~~ndiavd~dG~lyvtd~~~~~I~~v~ 177 (332)
....++++..+-.||-... .+.+..-|.++.+-+....- .....-..++.+.|-.|++++.+..+.|..+|
T Consensus 107 NIF~L~F~~~N~~~~SG~~------~~~VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 107 NIFSLEFDLENRFLYSGER------WGTVIKHDIETKQSIYVANE---NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred ceEEEEEccCCeeEecCCC------cceeEeeecccceeeeeecc---cCcccceeecccCCCCceEEEEecCceEEEEe
Confidence 4678899886333333322 34567778877554433221 11123456677788777888888888888777
Q ss_pred CC
Q 020019 178 VK 179 (332)
Q Consensus 178 ~~ 179 (332)
..
T Consensus 178 ~R 179 (609)
T KOG4227|consen 178 NR 179 (609)
T ss_pred cc
Confidence 54
Done!