BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020021
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 132/274 (48%), Gaps = 12/274 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
SE + + + + + +SS+ F + +L ++S D+ I+++ KTI+ K
Sbjct: 9 SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 69 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
+ A+FS G +++SGS D VY W++++ KE+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 274
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 L 147
L
Sbjct: 310 L 310
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 132/274 (48%), Gaps = 12/274 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
SE + + + + + +SS+ F + +L ++S D+ I+++ KTI+ K
Sbjct: 9 SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 69 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
+ A+FS G +++SGS D VY W++++ KE+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 274
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 LW 148
L+
Sbjct: 310 LY 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 131/274 (47%), Gaps = 12/274 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
SE + + + + + +SS+ F + +L +S D+ I+++ KTI+ K
Sbjct: 9 SEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK 68
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 69 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 182
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 241
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
+ A+FS G +++SGS D VY W++++ KE+
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 274
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 107 KGHSN---------YVFCC----------------------------------NFNPQSN 123
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 181 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 237
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 LW 148
LW
Sbjct: 310 LW 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 92 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 108 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 217
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 218 LDNTLKLWDYSKGKC 232
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 254
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 255 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 312
Query: 147 LW 148
LW
Sbjct: 313 LW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 131/274 (47%), Gaps = 12/274 (4%)
Query: 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK 76
S + + + + + +SS+ F + +L ++S D+ I+++ KTI+ K
Sbjct: 5 STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 64
Query: 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136
G+ V ++S ++ +S D++L++ + K L+ KGH + V + +
Sbjct: 65 LGISDVAWSSDSNLLVSASD---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYE 193
+SGS D +V +WD + KC L P +A D L+ + ++ G R++D
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---A 178
Query: 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
G + D + VKFS +G+ +L T++ + + D +G L TY +
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKY 237
Query: 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRSGKEV 286
+ A+FS G +++SGS D VY W++++ KE+
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEI 270
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 43 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 103 KGHSN---------YVFCC----------------------------------NFNPQSN 119
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 177 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 233
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 247
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 248 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 305
Query: 147 LW 148
LW
Sbjct: 306 LW 307
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 91 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 204
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 263
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 264 NLVYIWNLQT-KEI 276
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 107 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 166
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 216
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 217 LDNTLKLWDYSKGKC 231
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 49 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 109 KGHSN---------YVFCC----------------------------------NFNPQSN 125
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 183 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 239
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 253
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 254 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 311
Query: 147 LW 148
LW
Sbjct: 312 LW 313
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 92 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 108 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 217
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 218 LDNTLKLWDYSKGKC 232
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 254
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 255 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 312
Query: 147 LW 148
LW
Sbjct: 313 LW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 92 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 205
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 264
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 265 NLVYIWNLQT-KEI 277
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 108 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 217
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 218 LDNTLKLWDYSKGKC 232
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 110 KGHSN---------YVFCC----------------------------------NFNPQSN 126
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 184 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 240
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 254
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 255 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 312
Query: 147 LW 148
LW
Sbjct: 313 LW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 82 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 195
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 254
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 255 NLVYIWNLQT-KEI 267
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 98 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 157
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 207
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 208 LDNTLKLWDYSKGKC 222
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 40 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 100 KGHSN---------YVFCC----------------------------------NFNPQSN 116
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 174 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 230
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 244
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 245 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 302
Query: 147 LW 148
LW
Sbjct: 303 LW 304
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 86 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 258
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 259 NLVYIWNLQT-KEI 271
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 102 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 211
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 212 LDNTLKLWDYSKGKC 226
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 104 KGHSN---------YVFCC----------------------------------NFNPQSN 120
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 178 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 234
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 248
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 249 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 306
Query: 147 LW 148
LW
Sbjct: 307 LW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 87 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 200
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 259
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 260 NLVYIWNLQT-KEI 272
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 103 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 162
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 212
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 213 LDNTLKLWDYSKGKC 227
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 45 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 105 KGHSN---------YVFCC----------------------------------NFNPQSN 121
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 179 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 235
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 249
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 250 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 307
Query: 147 LW 148
LW
Sbjct: 308 LW 309
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 110 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 223
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 282
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 283 NLVYIWNLQT-KEI 295
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 126 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 235
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 236 LDNTLKLWDYSKGKC 250
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 68 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 128 KGHSN---------YVFCC----------------------------------NFNPQSN 144
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 202 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 258
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 272
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 273 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 330
Query: 147 LW 148
LW
Sbjct: 331 LW 332
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 103 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 216
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 275
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 276 NLVYIWNLQT-KEI 288
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 119 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 178
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 228
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 229 LDNTLKLWDYSKGKC 243
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 61 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 121 KGHSN---------YVFCC----------------------------------NFNPQSN 137
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 195 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 251
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 265
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 266 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 323
Query: 147 LW 148
LW
Sbjct: 324 LW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 86 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 199
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 258
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 259 NLVYIWNLQT-KEI 271
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 102 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 211
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 212 LDNTLKLWDYSKGKC 226
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 104 KGHSN---------YVFCC----------------------------------NFNPQSN 120
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 178 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 234
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 248
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 249 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 306
Query: 147 LW 148
LW
Sbjct: 307 LW 308
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + KC
Sbjct: 108 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 221
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 280
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 281 NLVYIWNLQT-KEI 293
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 124 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 233
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 234 LDNTLKLWDYSKGKC 248
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 56/240 (23%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 66 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
+ VF F+
Sbjct: 126 KGHSN---------YVFCC----------------------------------NFNPQSN 142
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
L++ + + + + D G L T P + F+ +G ++S S DG W
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 280 VRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRK 332
SG+ + + + D PPV +K++P ++ T + L W D SK L Y G K
Sbjct: 200 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHK 256
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 270
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 271 GKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 328
Query: 147 LW 148
LW
Sbjct: 329 LW 330
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + C
Sbjct: 89 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 262 NMVYIWNLQT-KEI 274
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 214
Query: 141 LDRTVLLWDQRAEKC 155
LD + LWD KC
Sbjct: 215 LDNDLKLWDYSKGKC 229
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 62/243 (25%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRP--AAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
+ ++ Q L+ + +F +R++D +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------------------ 142
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
M L T+ H PVS F+ +G ++S S DG
Sbjct: 143 ----MCLKTLPAH----------------SDPVS-----AVHFNRDGSLIVSSSYDGLCR 177
Query: 277 AWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYV 329
W SG+ + + + D PPV +K++P ++ T ++L W D SK L Y
Sbjct: 178 IWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKTYT 234
Query: 330 GRK 332
G K
Sbjct: 235 GHK 237
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D ++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 LW 148
LW
Sbjct: 310 LW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 12/254 (4%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
+SS+ F + +L ++S D+ I+++ KTI+ K G+ V ++S ++ +S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D++L++ + K L+ KGH + V + + +SGS D +V +WD + C
Sbjct: 89 ---DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 157 GLLRVQGRPAAAYD---DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213
L P +A D L+ + ++ G R++D G + D + VK
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCLKTLIDDDNPPVSFVK 202
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD 272
FS +G+ +L T++ + + D +G L TY + + A+FS G +++SGS D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSED 261
Query: 273 GSVYAWSVRSGKEV 286
VY W++++ KE+
Sbjct: 262 NMVYIWNLQT-KEI 274
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + ++ + +F+ S+ +V+ S DES+R++DV CLKT+ + V V F
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
Query: 89 TTVIYSSKNG----WD----ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS 140
+ ++ SS +G WD + L+ L DN + + K + ++ +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK----------FSPNGKYILAAT 214
Query: 141 LDRTVLLWDQRAEKC 155
LD T+ LWD KC
Sbjct: 215 LDNTLKLWDYSKGKC 229
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 62/243 (25%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D+ +++ +D K+ + GH + ++ S + +S S D+T+ +WD + KC L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 RVQGRP--AAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
+ ++ Q L+ + +F +R++D +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------------------ 142
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
M L T+ H PVS F+ +G ++S S DG
Sbjct: 143 ----MCLKTLPAH----------------SDPVS-----AVHFNRDGSLIVSSSYDGLCR 177
Query: 277 AWSVRSGKEVASWMSFDTEPPV--IKWTPGS--LMFVTGSSELSFWIPDLSK---LGAYV 329
W SG+ + + + D PPV +K++P ++ T + L W D SK L Y
Sbjct: 178 IWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYT 234
Query: 330 GRK 332
G K
Sbjct: 235 GHK 237
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHP 88
D N +S + F + Y++ A+ D +++L+D + CLKT ++KY + F+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTG 251
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVL 146
I S D + + +L + ++ +GH D V+S + +++ S +L D+T+
Sbjct: 252 GKWIVSGSE--DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 309
Query: 147 LW 148
LW
Sbjct: 310 LW 311
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 47/244 (19%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-S 95
+S+ F S ++TAS D + L+DV + L++ + +G D++C P+ +
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTFV 214
Query: 96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
G D+ + + + ++ F+ H V S+ S D F SGS D T L+D RA+
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-- 272
Query: 156 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 215
R A Y + ++F A+ V FS
Sbjct: 273 --------REVAIYSKESIIFG-------------------------------ASSVDFS 293
Query: 216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 275
GRL+ + I+V D +G+ +S +R STL SP+G SGS D ++
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLR--VSPDGTAFCSGSWDHTL 350
Query: 276 YAWS 279
W+
Sbjct: 351 RVWA 354
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 14/220 (6%)
Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAY 169
K R KGH ++V+ + C K +S S D V++WD + + + A AY
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 170 DDQGLVFAVAFGG-------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222
G A+A GG Y FD K E SV + + F+N +L
Sbjct: 115 APSGC--AIACGGLDNKCSVYPLTFD--KNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 223 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282
+ +G + D G LL +++ L+ + S G +SG D W +RS
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 283 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 322
G+ V ++ + +++ +++ P F +GS + + + DL
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYG 78
++S + +F + ++S+ ++ S + SDD + RLYD+ A + + S +G
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V F S ++++ N D ++ + + + GH +RV +L + F S
Sbjct: 287 ASSVDF-SLSGRLLFAGYN--DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 139 GSLDRTVLLW 148
GS D T+ +W
Sbjct: 344 GSWDHTLRVW 353
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 49/231 (21%)
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK--DCFISGSL 141
FT+ ++ +S +G + L + + L+ F GH V+ L L S+ + F+SG
Sbjct: 162 FTNSDMQILTASGDG---TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 142 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFS 201
D+ ++WD R+ +C VQ D + R Y G D F+
Sbjct: 219 DKKAMVWDMRSGQC-----VQAFETHESDVNSV---------------RYYPSG--DAFA 256
Query: 202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261
G D + + D R + + + E I S FS
Sbjct: 257 SGSDDATCRLYDLRAD-REVAIYSKESIIFGASSV---------------------DFSL 294
Query: 262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 312
G + +G D ++ W V G V+ + ++ +P F +GS
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
+ + +G + S+ N + S DG L+ +G I + + + T + ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
+ +FSP ++ + + G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
+ + +G + S+ N + S DG L+ +G I + + + T + ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
+ +FSP ++ + + G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
+ + +G + S+ N + S DG L+ +G I + + + T + ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
+ +FSP ++ + + G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 182
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
+ + +G + S+ N + S DG L+ +G I + + + T + ++
Sbjct: 183 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 237
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
+ +FSP ++ + + G
Sbjct: 238 DEVFSLAFSPNRYWLAAATATG 259
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 58
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V+S+ + IS
Sbjct: 59 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 139 GSLDRTVLLWDQRAEKCQGLL-------RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191
GS D+T+ +W + + LL +V+ P DD + A G +M A
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWN 176
Query: 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251
+ + +G + S+ N + S DG L+ +G I + + + T + ++
Sbjct: 177 LNQFQIEADFIGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ 231
Query: 252 NSTLEASFSPEGMFVISGSGDG 273
+ +FSP ++ + + G
Sbjct: 232 DEVFSLAFSPNRYWLAAATATG 253
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 29/247 (11%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
++ + FH S +V+AS+D +I+++D +T+ V + F H ++ S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
D +++L + +R GH V S+S+ + D +S S D+T+ +W+ + C
Sbjct: 170 A--DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
++RM R + G I S D + V +
Sbjct: 228 KTF------------------TGHREWVRM--VRPNQDGTL-IASCSNDQTVRVWVVATK 266
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
+ + L H HV++ S+Y+ + S + S P G F++SGS D ++
Sbjct: 267 ECKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSRDKTIK 321
Query: 277 AWSVRSG 283
W V +G
Sbjct: 322 MWDVSTG 328
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 44 KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103
K +L++ S D++I+++DV+ CL T+ V V F S ++ + D++L
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTL 362
Query: 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151
R+ + + ++ H V SL + ++GS+D+TV +W+ R
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 109/282 (38%), Gaps = 45/282 (15%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88
+ + + + + F S L + S D +I+L+D C++T++ + V V +
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148
++ +S+ D+++++ + ++ F GH + V + S S D+TV +W
Sbjct: 205 DHIVSASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 149 DQRAEKCQGLLR--------VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200
++C+ LR + P ++Y + A G + + + GPF +
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSS----ISEATGSETK----KSGKPGPF-LL 312
Query: 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIH-------------VLDSFRGTLLSTYNVK 247
S D +K + M L T+ GH + +L L ++ K
Sbjct: 313 SGSRD----KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Query: 248 PVSRNSTLEA--------SFSPEGMFVISGSGDGSVYAWSVR 281
TL A F +V++GS D +V W R
Sbjct: 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
Q E + ++ +SS+ + ++V+AS D++I++++V C+KT + V
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC----- 135
+V + T+I S N D+++R+ + + + H V +S
Sbjct: 239 MV-RPNQDGTLIASCSN--DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295
Query: 136 ---------------FISGSLDRTVLLWDQRAEKC 155
+SGS D+T+ +WD C
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGV 79
M+ ++ + + FH ++++ +DD+++R++D C+KT+N+ ++ V
Sbjct: 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 58/266 (21%)
Query: 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ +NG ++S+ + L++AS D+++ + +T + +K+GV + F H
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGH 64
Query: 88 PTTV---------IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138
V Y+ WD++LRL + + + F GH V S+ + IS
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 139 GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 198
GS D+T+ +W + + LL ++D + +R+ K +
Sbjct: 125 GSRDKTIKVWTIKGQCLATLL--------GHND--------WVSQVRVVPNEKADDDSVT 168
Query: 199 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258
I S G D VK N + + GH S +TL A
Sbjct: 169 IISAGND----KXVKAWNLNQFQIEADFIGH-------------------NSNINTLTA- 204
Query: 259 FSPEGMFVISGSGDGSVYAWSVRSGK 284
SP+G + S DG + W++ + K
Sbjct: 205 -SPDGTLIASAGKDGEIXLWNLAAKK 229
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 20/242 (8%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F + +ASDD++++L++ L+T+ V V F+ T+ +S D+
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASD---DK 407
Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-- 159
+++L + + + L+ GH V ++ S S D+TV LW++ + Q L
Sbjct: 408 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH 466
Query: 160 --RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217
V+G A+ G A A + + + + ++ G S V FS D
Sbjct: 467 SSSVRG---VAFSPDGQTIASASDDKT----VKLWNRNGQLLQTLTGHSSSVRGVAFSPD 519
Query: 218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA 277
G+ + + + + + + G LL T +S +FSP+G + S S D +V
Sbjct: 520 GQTIASASDDKTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASSDKTVKL 575
Query: 278 WS 279
W+
Sbjct: 576 WN 577
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 51/271 (18%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
++ ++ + F + +ASDD++++L++ L+T+ V V F+ T+
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
+S D++++L + + ++L+ GH V ++ S S D+TV LW++
Sbjct: 320 SASD---DKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 153 EKCQGLL----RVQG---RP-----AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200
+ Q L V+G P A+A DD+ + G ++ ++
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VW 430
Query: 201 SVGGDISDANVVKFSNDGRL-------MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253
V D + S+D + LL T+ GH S RG
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRG--------------- 472
Query: 254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGK 284
+FSP+G + S S D +V W+ R+G+
Sbjct: 473 ---VAFSPDGQTIASASDDKTVKLWN-RNGQ 499
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 37/255 (14%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F + +ASDD++++L++ L+T+ V V F+ T+ +S D+
Sbjct: 147 FSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASD---DK 202
Query: 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL-- 159
+++L + + + L+ GH V ++ S S D+TV LW++ + Q L
Sbjct: 203 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 261
Query: 160 --RVQG---RP-----AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 209
V G RP A+A DD+ + G ++ ++ V
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VWGVAFSPDGQ 316
Query: 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269
+ S+D + L H+ L G S + V +FSP+G + S
Sbjct: 317 TIASASDDKTVKLWNRNGQHLQTL---TGHSSSVWGV-----------AFSPDGQTIASA 362
Query: 270 SGDGSVYAWSVRSGK 284
S D +V W+ R+G+
Sbjct: 363 SDDKTVKLWN-RNGQ 376
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141
V F+ T+ +S D++++L + + + L+ GH V ++ S S
Sbjct: 22 VAFSPDGQTIASASD---DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 142 DRTVLLWDQRAEKCQGLL----RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197
D+TV LW++ + Q L V+G A+ G A A + + +
Sbjct: 78 DKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKT----VKLWNRNGQ 130
Query: 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257
+ ++ G S V FS DG+ + + + + + + G LL T +S
Sbjct: 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---SSVWGV 186
Query: 258 SFSPEGMFVISGSGDGSVYAWSVRSGK 284
+FSP+G + S S D +V W+ R+G+
Sbjct: 187 AFSPDGQTIASASDDKTVKLWN-RNGQ 212
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 14/176 (7%)
Query: 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 171
K + H V ++ S S D+TV LW++ + Q L G ++ +
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVW-- 61
Query: 172 QGLVFAVAFGGYIRMFDARK---YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228
G+ F+ D + + + + ++ G S V FS DG+ + + +
Sbjct: 62 -GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 284
+ + + G LL T +S +FSP+G + S S D +V W+ R+G+
Sbjct: 121 TVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106
+ +++ S D ++++++ C+ T+ V C H V+ S+ D +LR+
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSR---DATLRVW 224
Query: 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDC--FISGSLDRTVLLWDQRAEKCQGLLRVQGR 164
+ + L GH V+ C D +SG+ D V +WD E C L +QG
Sbjct: 225 DIETGQCLHVLMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHTLQGH 278
Query: 165 PAAAYDDQ--GL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM 221
Y Q G+ V + + IR++D E G I ++ G S + ++ ++ ++
Sbjct: 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDV---ETGNC-IHTLTGHQSLTSGMELKDN--IL 332
Query: 222 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281
+ + + + D G L T +++ F+ FVI+ S DG+V W ++
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 390
Query: 282 SGKEVASWMSFDT 294
+G+ + + ++ ++
Sbjct: 391 TGEFIRNLVTLES 403
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 108/265 (40%), Gaps = 53/265 (20%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
I+ + F + +V+ SDD +++++ CL+T+ GV ++S I S
Sbjct: 122 ITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISG 175
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ D +L++ + + + GH V + L + +SGS D T+ +WD +C
Sbjct: 176 ST-DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCL 232
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
+L G AA Q +D R+ G +D VK +
Sbjct: 233 HVL--MGHVAAVRCVQ--------------YDGRRVVSGAYDFM-----------VKVWD 265
Query: 217 DGRLMLLTTMEGH-----------IHVLDSFRGTLLSTYNVK------PVSRNSTLEASF 259
L T++GH IHV+ T + ++V+ ++ + +L +
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 260 SPEGMFVISGSGDGSVYAWSVRSGK 284
+ ++SG+ D +V W +++G+
Sbjct: 326 ELKDNILVSGNADSTVKIWDIKTGQ 350
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 8/134 (5%)
Query: 23 SMEVGMSFRDYNGRISSMD-FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
+ E G G S++ H +V+ S D ++R++D+ CL + V
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244
Query: 82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141
V + +D +++ L +GH +RV SL +SGSL
Sbjct: 245 VQYDGRRVV-----SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSL 297
Query: 142 DRTVLLWDQRAEKC 155
D ++ +WD C
Sbjct: 298 DTSIRVWDVETGNC 311
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFT 85
+ + + R+ S+ F ++V+ S D SIR++DV C+ T+ + G++L
Sbjct: 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---- 327
Query: 86 SHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSLD 142
I S N D ++++ + + L+ +G H V L +K+ I+ S D
Sbjct: 328 ---KDNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDD 381
Query: 143 RTVLLWD 149
TV LWD
Sbjct: 382 GTVKLWD 388
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 42/239 (17%)
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS-LSLCSSKDCFISGSLD 142
F P Y ++ D + R L K L KGH D V++ L C ++ +SGS D
Sbjct: 84 FIHSPWKSAYIRQHRIDTNWRRGELKSPKVL---KGHDDHVITCLQFCGNR--IVSGSDD 138
Query: 143 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV 202
T+ +W KC L + G + Q + G R E G I ++
Sbjct: 139 NTLKVWSAVTGKC--LRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC-IHTL 195
Query: 203 GGDIS--------DANVVKFSNDGRLML--------LTTMEGHI-----------HVLDS 235
G S + VV S D L + L + GH+ V+
Sbjct: 196 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG 255
Query: 236 FRGTLLSTYNVKPVSRNSTLEA------SFSPEGMFVISGSGDGSVYAWSVRSGKEVAS 288
++ ++ + + TL+ S +G+ V+SGS D S+ W V +G + +
Sbjct: 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 314
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 47/190 (24%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159
D +R+ + + K + +GH + SL S D +SGS DRTV +WD R +C L
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
Query: 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219
++ D AV+ G DG+
Sbjct: 204 SIE--------DGVTTVAVSPG-----------------------------------DGK 220
Query: 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----RNSTLEASFSPEGMFVISGSGDGSV 275
+ +++ + V DS G L+ + + S ++S F+ +G V+SGS D SV
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 276 YAWSVRSGKE 285
W++++
Sbjct: 281 KLWNLQNANN 290
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLL------STYNVKPVSRNSTLEAS------- 258
VKFSNDG L T V G+L+ S N P + N++ S
Sbjct: 70 VKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128
Query: 259 --FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 316
FSP+G F+ +G+ D + W + + K V + + + + P V+GS + +
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 317 FWIPDL 322
I DL
Sbjct: 189 VRIWDL 194
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 175 VFAVAFGGYI-RMFDARKYEKGPFDIFSVGGDISDANV--VKFSNDGRLMLLTTMEGHIH 231
V+ V+ G + R+ D K P ++ + SD + V FS DG+ + + I
Sbjct: 89 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148
Query: 232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS 291
+ D ++ + + P G ++SGSGD +V W +R+G + + +S
Sbjct: 149 IWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLS 204
Query: 292 FDTEPPVIKWTPGSLMFVTGSS 313
+ + +PG ++ S
Sbjct: 205 IEDGVTTVAVSPGDGKYIAAGS 226
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 91/255 (35%), Gaps = 61/255 (23%)
Query: 45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------ 95
++ +V+AS D+SI L+ +T + K YGV T H V+ SS
Sbjct: 394 NADIIVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446
Query: 96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
WD LRL L R F GH V+S++ +S S DRT+ LW+ E C
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-C 505
Query: 156 QGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD--IFSVGGDISDANVVK 213
+ + G G+ ++ I S D VK
Sbjct: 506 KYTISEGGE-----------------GHRDWVSCVRFSPNTLQPTIVSASWD----KTVK 544
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273
N L +T+ GH + + + SP+G SG DG
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTV---------------------AVSPDGSLCASGGKDG 583
Query: 274 SVYAWSVRSGKEVAS 288
V W + GK++ S
Sbjct: 584 VVLLWDLAEGKKLYS 598
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 21 LQSMEVGMSFRDYNGR---ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G+S R + G + S+ F + +V+AS D +I+L++ T C TI+
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGE 514
Query: 78 G----VDLVCF---TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC 130
G V V F T PT V S WD+++++ +L + K GH V ++++
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSAS----WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Query: 131 SSKDCFISGSLDRTVLLWD 149
SG D VLLWD
Sbjct: 571 PDGSLCASGGKDGVVLLWD 589
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 104/284 (36%), Gaps = 60/284 (21%)
Query: 13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKT 71
+L + + M + + + +NG ++ + +++AS D++I ++ +T
Sbjct: 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR------ 70
Query: 72 INSKKYGVDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHD 122
+ YG+ H + V+ SS WD +LRL L R F GH
Sbjct: 71 -DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129
Query: 123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 182
V+S++ S +SGS D+T+ LW+ C+ VQ + + V V F
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCK--YTVQDESHSEW-----VSCVRFS- 180
Query: 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242
P I S G D +VK N L T GH L++
Sbjct: 181 --------PNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYLNT------- 220
Query: 243 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286
+ SP+G SG DG W + GK +
Sbjct: 221 --------------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 102/277 (36%), Gaps = 60/277 (21%)
Query: 20 ILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINSKKYG 78
+ + M + + + +NG ++ + +++AS D++I ++ +T + YG
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR-------DETNYG 53
Query: 79 VDLVCFTSHP---TTVIYSS------KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSL 129
+ H + V+ SS WD +LRL L R F GH V+S++
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 130 CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDA 189
S +SGS D+T+ LW+ C+ VQ + + V V F
Sbjct: 114 SSDNRQIVSGSRDKTIKLWNTLGV-CK--YTVQDESHSEW-----VSCVRFS-------- 157
Query: 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249
P I S G D +VK N L T GH L++
Sbjct: 158 -PNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYLNT-------------- 197
Query: 250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286
+ SP+G SG DG W + GK +
Sbjct: 198 -------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 61/165 (36%), Gaps = 47/165 (28%)
Query: 119 GHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 177
GH V+SLS+ S + + FISGS D TV LWD LR+ R Y
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWD---------LRITSRAVRTYH------- 246
Query: 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237
G D N VKF DG+ + +G + D
Sbjct: 247 --------------------------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 238 GTLLSTYNVKPVSRNSTL----EASFSPEGMFVISGSGDGSVYAW 278
G L YN +P ++ L +FS G + +G +G Y W
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 9/164 (5%)
Query: 23 SMEVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSK---KYG 78
+M V + G SS + + L+T S D++ L+DVT + S+ +
Sbjct: 146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205
Query: 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFI 137
D++ + + D ++RL L ++ +R + GH + S+ F
Sbjct: 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG 265
Query: 138 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ-GLVFAVAF 180
+GS D T L+D R L+V R D++ +V +VAF
Sbjct: 266 TGSDDGTCRLFDMRTGH---QLQVYNREPDRNDNELPIVTSVAF 306
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-------L 81
++ + G I+S+ F T SDD + RL+D+ L+ N + D
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303
Query: 82 VCFTSHPTTVIYSSKNG----WDESLRLLSLHDNKYLRYFKGHHD-RVVSLSLCSSKDCF 136
V F+ + NG WD L + L+ L + H+ R+ L L S
Sbjct: 304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN----LGTLQNSHEGRISCLGLSSDGSAL 359
Query: 137 ISGSLDRTVLLW 148
+GS D+ + +W
Sbjct: 360 CTGSWDKNLKIW 371
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 248 PVSRNSTLEASFSPEGMFV-------ISGSGDGSVYAWSVRSGKEVASWMSFDTEPP--- 297
PVSR T ++ +V I+GSGD + W V +G+ ++ F +E P
Sbjct: 148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS---IFGSEFPSGH 204
Query: 298 ---VIKWTPGSL---MFVTGSSELSFWIPDL 322
V+ + SL MF++GS + + + DL
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWDL 235
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + L++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
TV LW+
Sbjct: 120 TVKLWN 125
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F ++++ SDD IR+++ T K ++ + + + HPT S + D
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DL 119
Query: 102 SLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLW 148
+++L + +N L + F+GH V+ ++ + KD F SG LDRTV +W
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVW 168
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNG 98
Y++TASDD +I+++D +C+ T+ V F HPT +I S++G
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDG 250
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV-CFTSHPTTVIYSSKNGWD 100
FH + +++ S+D ++++++ + KT+N G++ C +HPT +G+D
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIATHPTGRKNYIASGFD 292
Query: 101 ESLRLLSLHDNK 112
+LSL +++
Sbjct: 293 NGFTVLSLGNDE 304
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 113/270 (41%), Gaps = 30/270 (11%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + L++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---- 198
TV LW+ E L + +G + V VAF D + G D
Sbjct: 120 TVKLWNW--ENNWALEQTFEGH-------EHFVMCVAFNPK----DPSTFASGCLDRTVK 166
Query: 199 IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE- 256
++S+G + + G + + +++ + + ++ + S +TLE
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 257 -------ASFSPEGMFVISGSGDGSVYAWS 279
A F P +ISGS DG++ W+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
Q+ + + +S FH + +++ S+D ++++++ + KT+N G++
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLER 272
Query: 82 V-CFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112
C +HPT +G+D +LSL +++
Sbjct: 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 113/270 (41%), Gaps = 30/270 (11%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + L++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD---- 198
TV LW+ E L + +G + V VAF D + G D
Sbjct: 120 TVKLWNW--ENNWALEQTFEGH-------EHFVMCVAFNPK----DPSTFASGCLDRTVK 166
Query: 199 IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE- 256
++S+G + + G + + +++ + + ++ + S +TLE
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 257 -------ASFSPEGMFVISGSGDGSVYAWS 279
A F P +ISGS DG++ W+
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 81
Q+ + + +S FH + +++ S+D ++++++ + KT+N G++
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLER 272
Query: 82 V-CFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112
C +HPT +G+D +LSL +++
Sbjct: 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ ++ +DF Y+V+AS D +I++++ + ++T+N K G+ C V+
Sbjct: 255 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVV 310
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
S D ++RL + LR +GH + V + + + +SG+ D + +WD
Sbjct: 311 SGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWD 362
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 15 ELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL---KT 71
E+ ++ E + R NG +VT S D SI ++D+ + T + +
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNG------------MMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS 131
+ + V++V F Y D ++++ + +++R GH + L
Sbjct: 252 LVGHRAAVNVVDFDDK-----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-- 304
Query: 132 SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QGRP----AAAYDDQGLVFAVAFGGYIRM 186
+SGS D T+ LWD +C LRV +G +D++ +V A+ G I++
Sbjct: 305 RDRLVVSGSSDNTIRLWDI---ECGACLRVLEGHEELVRCIRFDNKRIVSG-AYDGKIKV 360
Query: 187 FD 188
+D
Sbjct: 361 WD 362
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108
+V+ S D +IRL+D+ CL+ + + V + F + ++ + +G + L++
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAA 366
Query: 109 HDNK------YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
D + LR H RV L + +S S D T+L+WD
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK 194
+SG D T+ +WD+ +C+ +L G D+ ++ + +R++D E
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM 205
Query: 195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254
I + ++F+N +M+ + + I V D T ++ V R +
Sbjct: 206 LNTLIHHCEAVLH----LRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259
Query: 255 LEASFSPEGMFVISGSGDGSVYAWS 279
F + +++S SGD ++ W+
Sbjct: 260 NVVDF--DDKYIVSASGDRTIKVWN 282
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC 83
+++ +F + + R+ +DFH + +++T + +++ +++I + V
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 84 FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
F + +I S D +R+ + + + + F+ H D + S+++ +K +SGS D
Sbjct: 63 FIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 144 TVLLWD 149
TV LW+
Sbjct: 120 TVKLWN 125
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101
F ++++ SDD IR+++ T K ++ + + + HPT S + D
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DL 119
Query: 102 SLRLLSLHDNKYL-RYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLW 148
+++L + +N L + F+GH V+ ++ + KD F SG LDRTV +W
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVW 168
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 48 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNG 98
Y++TASDD +I+++D +C+ T+ V F HPT +I S++G
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDG 250
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV-CFTSHPTTVIYSSKNGWD 100
FH + +++ S+D ++++++ + KT+N G++ C +HPT +G+D
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN---VGLERSWCIATHPTGRKNYIASGFD 292
Query: 101 ESLRLLSLHDNK 112
+LSL +++
Sbjct: 293 NGFTVLSLGNDE 304
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 19/216 (8%)
Query: 111 NKYLRYFK---GHHDRVVSLSLCSSK----DCFISGSLDRTVLLWDQRAEKCQGLLRVQG 163
N+Y FK H D + S++ ++K + ++GSLD V +W R E+ ++G
Sbjct: 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG 78
Query: 164 RPAAAYD-DQGLVFAVA----FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218
D +A +IR++D ++ I S+ DA + FS D
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ----IKSIDAGPVDAWTLAFSPDS 134
Query: 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAW 278
+ + T G +++ G + + + L ++SP+G ++ SG+ DG + +
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTR---GKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 279 SVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
+ +GK + + + ++P S + VT S +
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF 176
+GH VVS+ + + S SLD + LWD K +++ A D L F
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAF 130
Query: 177 A-----VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 231
+ +A G ++ + E G + +S+ + +S DG+ + ++G I+
Sbjct: 131 SPDSQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281
+ D G LL T + S +FSP+ +++ S DG + + V+
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSL---TFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 12/146 (8%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
I S+ + YL + + D I ++D+ L T+ + + F+ ++ +S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+G+ +++ + GH V++++ C F+S S D++V +WD C
Sbjct: 227 DGY---IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGG 182
+D Q V+ V + G
Sbjct: 284 HTF---------FDHQDQVWGVKYNG 300
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 29/190 (15%)
Query: 30 FRDYNGRISSMDF--HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
F +N + +D +K+ Y+VT S D ++ ++ + + + + +++ LV T
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPE 257
Query: 88 PTTVIYSSKNGWDESLRLLSLHDN-------------------KYLRYFKGHHDRVVSLS 128
G S+R +S H N K L GH DR+ S
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFAVAFGGYI 184
+ IS S+D T+ +WD E + + +QG A D+ LV A A G I
Sbjct: 318 YDHERKRCISASMDTTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAA-DGSI 374
Query: 185 RMFDARKYEK 194
R +DA Y +
Sbjct: 375 RGWDANDYSR 384
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106
+Y++T +DD+ IR+YD L ++ GV + + +H ++ S D ++R+
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST---DRTVRVW 188
Query: 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDC--FISGSLDRTVLLWDQRAE 153
+ F+GH+ V L + K+ ++GS D T+ +W E
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 53 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI--------YSSKNGWDESLR 104
S + +RL + LK + K+ H T+VI Y D+ +R
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIR 145
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
+ + K+L GH V +L +SGS DRTV +WD + C
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC 195
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVD 80
E + + + S+ + S + L T S D+S+ +++V C+ +NS V
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFIS 138
V + HP+ + +S + +D++++L ++ ++ +GH V SL+ S S
Sbjct: 155 HVVW--HPSQELLASAS-YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211
Query: 139 GSLDRTVLLWDQ 150
S DRTV +W Q
Sbjct: 212 CSDDRTVRIWRQ 223
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 315 LSFWIPDL 322
+ + DL
Sbjct: 248 ATCRLFDL 255
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263
G ++ + + D RL+L + +G + + DS+ + + P+ + + +++P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY---TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 264 MFVISGSGDG--SVYAWSVRSGK 284
+V G D S+Y R G
Sbjct: 110 NYVACGGLDNICSIYNLKTREGN 132
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 315 LSFWIPDL 322
+ + DL
Sbjct: 248 ATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 315 LSFWIPDL 322
+ + DL
Sbjct: 248 ATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 243 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 301 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 243 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 298 DALKADRAGVL 308
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 315 LSFWIPDL 322
+ + DL
Sbjct: 248 ATCRLFDL 255
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263
G ++ + + D RL+L + +G + + DS+ + + P+ + + +++P G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY---TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 264 MFVISGSGDG--SVYAWSVRSGK 284
+V G D S+Y R G
Sbjct: 110 NYVACGGLDNICSIYNLKTREGN 132
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 14/166 (8%)
Query: 120 HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA 177
H V+SLSL F+SG+ D + LWD R C+ A + G FA
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236
R+FD R ++ +S I V FS GRL+L + + +V D+
Sbjct: 254 TGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 237 ---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279
R +L+ ++ +R S L + +GM V +GS D + W+
Sbjct: 312 KADRAGVLAGHD----NRVSCL--GVTDDGMAVATGSWDSFLKIWN 351
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92
+ G + S+ + V+ + D S +L+DV C +T + ++ +CF +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV----SLSLCSSKDCFISGSLDRTVLLW 148
S D + RL L ++ L + HD ++ S+S S ++G D +W
Sbjct: 254 TGSD---DATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
Query: 149 DQRAEKCQGLL 159
D G+L
Sbjct: 309 DALKADRAGVL 319
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314
+ S +P+ +SG+ D S W VR G ++ +++ I + P F TGS +
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 258
Query: 315 LSFWIPDL 322
+ + DL
Sbjct: 259 ATCRLFDL 266
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103
S T D +IR++DVT + C++ T++ ++ G V + I S D +L
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGTL 321
Query: 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA---EKCQGLLR 160
L ++ L+ GH+ + +L++ + ISGS D ++ W + + ++
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVS 377
Query: 161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220
+ A Y ++++ +++ K+E G S V +NDG
Sbjct: 378 LDNSKAQEYS------SISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFT 420
Query: 221 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264
+LT + + +L SF G ++ + + +L ++ G+
Sbjct: 421 AVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 43/189 (22%)
Query: 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 158
WD SLRL +L + + F GH V+S++ +SG D + +W+ + E L
Sbjct: 87 WDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218
R A+ D V V F + DA G +D N+VK +
Sbjct: 147 SR------GAHTD--WVSCVRFSPSL---DAPVIVSGGWD-----------NLVKVWDLA 184
Query: 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAW 278
L+T ++GH + + S + SP+G S DG W
Sbjct: 185 TGRLVTDLKGHTNYVTSV---------------------TVSPDGSLCASSDKDGVARLW 223
Query: 279 SVRSGKEVA 287
+ G+ ++
Sbjct: 224 DLTKGEALS 232
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
LQ+ + F + + S+ F + +V+ D ++R+++V C+ T++ +
Sbjct: 96 LQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDW 154
Query: 81 LVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI 137
+ C P+ VI S GWD +++ L + + KGH + V S+++
Sbjct: 155 VSCVRFSPSLDAPVIVSG--GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
Query: 138 SGSLDRTVLLWD 149
S D LWD
Sbjct: 213 SSDKDGVARLWD 224
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Query: 30 FRDYNGRISSMDF--HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
F +N + +D +K+ Y+VT S D ++ ++ + + + + +++ LV T
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYPLVFHTPE 257
Query: 88 PTTVIYSSKNGWDESLRLLSLHDN-------------------KYLRYFKGHHDRVVSLS 128
G S+R +S H N K L GH DR+ S
Sbjct: 258 ENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI 317
Query: 129 LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA----YDDQGLVFAVAFGGYI 184
+ IS S D T+ +WD E + +QG A D+ LV A A G I
Sbjct: 318 YDHERKRCISASXDTTIRIWD--LENGELXYTLQGHTALVGLLRLSDKFLVSAAA-DGSI 374
Query: 185 RMFDARKYEK 194
R +DA Y +
Sbjct: 375 RGWDANDYSR 384
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
I+ + F +Y++T +DD+ IR+YD L ++ GV + + +H ++ S
Sbjct: 125 ITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC--FISGSLDRTVLLWDQRAE 153
D ++R+ + F+GH+ V L + K+ ++GS D T+ +W E
Sbjct: 182 ---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 53 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI--------YSSKNGWDESLR 104
S + +RL + LK + K+ H T+VI Y D+ +R
Sbjct: 86 SQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIR 145
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC 155
+ + K+L GH V +L +SGS DRTV +WD + C
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC 195
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 21 LQSMEVGMSFRDYNGRIS---SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L + G +++ + G S S+ F + +++A + I+L+++ + + +
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 78 GVDLVCFTSHPTT---------VIYSSKNGWDESLRLLSLHDNKYLRY-FKGHHDRVVSL 127
+ C P Y + GWD L++ + N +RY FK H V L
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW--NTNFQIRYTFKAHESNVNHL 219
Query: 128 SLCSSKDCFISGSLDRTVLLWD 149
S+ + +G D+ +L+WD
Sbjct: 220 SISPNGKYIATGGKDKKLLIWD 241
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
WD++LRL L + F GH V S++ +S +R + LW+
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 100 DESLRLLSLHDNKYLRYF-------KGHHDRVVSLSLCSSKDCF-ISGSLDRTVLLWDQR 151
D+++ + L++ + YF GH+ V L+L S ++CF IS S D+T+ LWD R
Sbjct: 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL-SQENCFAISSSWDKTLRLWDLR 106
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 22/201 (10%)
Query: 111 NKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWD-----------QRAEKCQGL 158
+K + GH V+ ++ C D I SGS D TV++W+ + +G
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV--VKFSN 216
+ G A Q ++ + I ++D + ++G D+ + V +S
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSR 186
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDG 273
DG L+ + + + V++ +GT+++ + +P + A F EG + +G +
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Query: 274 SVYAWSVRSGKEVASWMSFDT 294
V W + +E S DT
Sbjct: 246 QVALWDTKHLEEPLSLQELDT 266
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 29/224 (12%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103
S T D +IR++DVT + C++ T++ ++ G V + I S D +L
Sbjct: 264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--LDGTL 321
Query: 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW---DQRAEKCQGLLR 160
L ++ L+ GH+ + +L++ + ISGS D + W + ++
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEWSSSSXHQDHSNLIVS 377
Query: 161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220
+ A Y ++++ +++ K+E G S V +NDG
Sbjct: 378 LDNSKAQEYS------SISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFT 420
Query: 221 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264
+LT + + +L SF G ++ + + +L ++ G+
Sbjct: 421 AVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT----SHPTTVIYSSKNGWDESLR 104
++ ASD ++ L+++ L KY D + T S T + K D S++
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVK 164
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEK 154
+ L L+ + H V ++ C KD F+S D +LLWD R K
Sbjct: 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 34/266 (12%)
Query: 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106
S + + S D ++RL+ + + + ++ VC+ S +++ K+ + L
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLF 89
Query: 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 166
+ L GH V SLS ISGS D+T +W + + + +Q A
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSL----VYNLQAHNA 143
Query: 167 AAYDDQGLVFA------VAFGGYIRMFDARKYEKG----PFDIFSVGGDISDANVVKFSN 216
+ +D + + F+ + I+++ K K D+ + D + + SN
Sbjct: 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN 203
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276
DG + L+ G VL ++ G Y +K + P G V G D +V
Sbjct: 204 DGLIKLVDXHTG--DVLRTYEGHESFVYCIKLL-----------PNGDIVSCGE-DRTVR 249
Query: 277 AWSVRSGKEVASWMSFDTEPPVIKWT 302
WS KE S T P + W+
Sbjct: 250 IWS----KENGSLKQVITLPAISIWS 271
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 50/218 (22%)
Query: 119 GHHDRVVSLSL-CSSKDCFISGSLDRTVLLWDQRAEKCQG-------LLRVQGRPAAAYD 170
GH + S+ + C +K C ++GS D ++ LWD +C + RV+ P Y
Sbjct: 72 GHTGTIWSIDVDCFTKYC-VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNY- 129
Query: 171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI 230
++ + D G +I+ + D + + K S E I
Sbjct: 130 ------------FLAILDNVMKNPGSINIYEIERDSATHELTKVS-----------EEPI 166
Query: 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM 290
H + + G +T A +S +G ++I+G DG + + V + E
Sbjct: 167 HKIITHEGLDAATV------------AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD-- 212
Query: 291 SFDTEPPVI---KWTPGSLMFVTGSSELSFWIPDLSKL 325
S D I +++P F+T S + + ++ D+S L
Sbjct: 213 SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS 74
+ G I S+D + Y VT S D SI+L+DV+ C+ T S
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS 114
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 271
VK++ +G L+ + + V S G L T + + S F+ + ++GS
Sbjct: 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK---YCVTGSA 94
Query: 272 DGSVYAWSVRSGKEVASWMS 291
D S+ W V +G+ VA+W S
Sbjct: 95 DYSIKLWDVSNGQCVATWKS 114
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ + + + F SY+ T S D+ ++++D + T + V+ FT+
Sbjct: 658 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 717
Query: 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
++ ++ + D L+L L+ + GH + V + S S D T+ L
Sbjct: 718 SNHLLLATGSN-DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 148 WDQRA 152
WD R+
Sbjct: 777 WDVRS 781
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 44/191 (23%)
Query: 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157
G D++L++ + L K H D V+ + S + S D+ V +WD
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS------- 693
Query: 158 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217
G+ YD+ N F+N
Sbjct: 694 ---ATGKLVHTYDEHS---------------------------------EQVNCCHFTNK 717
Query: 218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA 277
+LL T L + N NS FSP+ + S S DG++
Sbjct: 718 SNHLLLATGSNDF-FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 278 WSVRSGKEVAS 288
W VRS E S
Sbjct: 777 WDVRSANERKS 787
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 69/354 (19%), Positives = 121/354 (34%), Gaps = 93/354 (26%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV------------------- 82
F S +TASDD++IR+++ T C + K +D+V
Sbjct: 897 FSPDGSSFLTASDDQTIRVWE-TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 955
Query: 83 -------------------CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR 123
C + H V + ++G +++++ L +N+ GH
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG---AIKIIELPNNRVFSSGVGHKKA 1012
Query: 124 VVSLSLCSSKDCFISGSLDRTVLLWD------------QRAEKCQGLLR----------- 160
V + + IS S D + +W+ Q K LL+
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1072
Query: 161 -------VQGRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGP----FDIFSVGGDISD 208
+ GR + QG V + A F + +K FD+ S ++
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1132
Query: 209 AN----VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS--------TLE 256
N FS DG L+ G I + + G LL ++ P+S +
Sbjct: 1133 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL--HSCAPISVEEGTATHGGWVTD 1190
Query: 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT 310
FSP+ ++S G + W+V +G ++ + T I +P +VT
Sbjct: 1191 VCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1242
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273
FS DG+ + + + V + G L ++K + L +FS + ++ + S D
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKL--LDIK-AHEDEVLCCAFSSDDSYIATCSADK 686
Query: 274 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS--LMFVTGSSELSFWIPDLSK 324
V W +GK V ++ + +T S L+ TGS++ + DL++
Sbjct: 687 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L E + + ++ F L + S D ++RL+DV +A K+IN K++
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH 87
+ + + + F SY+ T S D+ ++++D + T + V+ FT+
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710
Query: 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
++ ++ + D L+L L+ + GH + V + S S D T+ L
Sbjct: 711 SNHLLLATGSN-DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 148 WDQRA 152
WD R+
Sbjct: 770 WDVRS 774
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 44/191 (23%)
Query: 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157
G D++L++ + L K H D V+ + S + S D+ V +WD
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS------- 686
Query: 158 LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217
G+ YD+ N F+N
Sbjct: 687 ---ATGKLVHTYDEHS---------------------------------EQVNCCHFTNK 710
Query: 218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA 277
+LL T L + N NS FSP+ + S S DG++
Sbjct: 711 SNHLLLATGSNDF-FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 278 WSVRSGKEVAS 288
W VRS E S
Sbjct: 770 WDVRSANERKS 780
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 69/354 (19%), Positives = 121/354 (34%), Gaps = 93/354 (26%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLV------------------- 82
F S +TASDD++IR+++ T C + K +D+V
Sbjct: 890 FSPDGSSFLTASDDQTIRVWE-TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948
Query: 83 -------------------CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR 123
C + H V + ++G +++++ L +N+ GH
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG---AIKIIELPNNRVFSSGVGHKKA 1005
Query: 124 VVSLSLCSSKDCFISGSLDRTVLLWD------------QRAEKCQGLLR----------- 160
V + + IS S D + +W+ Q K LL+
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1065
Query: 161 -------VQGRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGP----FDIFSVGGDISD 208
+ GR + QG V + A F + +K FD+ S ++
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1125
Query: 209 AN----VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS--------TLE 256
N FS DG L+ G I + + G LL ++ P+S +
Sbjct: 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL--HSCAPISVEEGTATHGGWVTD 1183
Query: 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT 310
FSP+ ++S G + W+V +G ++ + T I +P +VT
Sbjct: 1184 VCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1235
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273
FS DG+ + + + V + G L ++K + L +FS + ++ + S D
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKL--LDIK-AHEDEVLCCAFSSDDSYIATCSADK 679
Query: 274 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS--LMFVTGSSELSFWIPDLSK 324
V W +GK V ++ + +T S L+ TGS++ + DL++
Sbjct: 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77
L E + + ++ F L + S D ++RL+DV +A K+IN K++
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 67/356 (18%), Positives = 126/356 (35%), Gaps = 98/356 (27%)
Query: 42 FHKSSSYLVTASDDESIRLYDVTAATC------------------------------LKT 71
F S +T+SDD++IRL++ T C L+
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWE-TKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQL 954
Query: 72 INSKKYGVDLV--------CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR 123
IN + +D + C + H + + +NG ++ +L L +N+ + H
Sbjct: 955 INGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENG---AIEILELVNNRIFQSRFQHKKT 1011
Query: 124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL----VFAVA 179
V + + + IS S D + +W+ + +KC + ++G D + L + + +
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKC---IFLRGHQETVKDFRLLKNSRLLSWS 1068
Query: 180 FGGYIRMF-------------------------DARKYEKGPFD-------------IFS 201
F G ++++ DA K+ D +
Sbjct: 1069 FDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHE 1128
Query: 202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-------T 254
+ G FS D L+ G I + + G LL + P+S
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL--HLCAPLSEEGAATHGGWV 1186
Query: 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT 310
+ FSP+G +IS G + W+V +G+ ++ + T I +P +VT
Sbjct: 1187 TDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVT 1240
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 214 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273
FS DG+ + + + V + G L +K + L +FS + F+ + S D
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKL--LEIK-AHEDEVLCCAFSTDDRFIATCSVDK 685
Query: 274 SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS--LMFVTGSSELSFWIPDLSK 324
V W+ +G+ V ++ + +T S L+ TGSS+ + DL++
Sbjct: 686 KVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80
L E + + ++ F L + S D +++L+D T+A K+IN K++ ++
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 795
Query: 81 L 81
L
Sbjct: 796 L 796
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT---SHPTTVIY 93
I S L+ + ++ ++D+ A T I ++ C+ S + V +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDSKVCF 157
Query: 94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153
S + D ++ + LH+ +R F+GH D + + + +G LD TV WD R
Sbjct: 158 SCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-- 213
Query: 154 KCQGLLRVQGRPAAAYDDQGLVFAVAF 180
+GR +D +F++ +
Sbjct: 214 --------EGRQLQQHDFTSQIFSLGY 232
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 192 YEKGPFDIFSVGGDISD-ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY---NVK 247
+E PF S G+ + + V+++ DG L T +G I + + GT + ++K
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 248 PVSRN-STLEASFSPEGMFVISGSGDGSVYAWSV---RSGKEVASWMSFDTEPPVIKWTP 303
V+ + S ++SP+G + S S D ++ W+V + K + + + I WT
Sbjct: 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294
Query: 304 GSLMFVTGSSELSFWIPDLSKL 325
+L+ ++ + ++F P+L +
Sbjct: 295 QALVSISANGFINFVNPELGSI 316
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFV 266
+++ V SND + + + + +HV ++ + S VK + + + + +FS G F+
Sbjct: 450 NSSCVALSNDKQFVAVGGQDSKVHV---YKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506
Query: 267 ISGSGDGSVYAWSVRSGKEVA---SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 323
++ V +SV + E+A SW + + W+P ++ TGS + S + +++
Sbjct: 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Query: 324 K 324
K
Sbjct: 567 K 567
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
Query: 111 NKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWD-----------QRAEKCQGL 158
+K + GH V+ ++ D I SGS D TV++W+ + +G
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV--VKFSN 216
+ G A Q ++ + I ++D + ++G D+ + V +S
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAA----VLTLGPDVHPDTIYSVDWSR 186
Query: 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDG 273
DG L+ + + + V++ +GT+++ + +P + A F EG + +G +
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Query: 274 SVYAWSVRSGKEVASWMSFDT 294
V W + +E S DT
Sbjct: 246 QVALWDTKHLEEPLSLQELDT 266
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 28 MSFRDYNGRISSMDFHK-SSSYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVDLVCF 84
+F + G + ++ + S+ L T + D IR+++V + CL +++ V + +
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILW 339
Query: 85 TSHPTTVIYSSKNGWDES-LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
+ H +I S +G+ ++ L + + KGH RV+SL++ S + D
Sbjct: 340 SPHYKELI--SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397
Query: 144 TVLLW 148
T+ LW
Sbjct: 398 TLRLW 402
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 94/264 (35%), Gaps = 44/264 (16%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
ISS+ + K +YL + ++L+DV L+ + S V + + S+ + S
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSG 220
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ +R+ H + GH V L SG D V +W A
Sbjct: 221 HIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEG 275
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
G + +Q QG V AVA+ + ++ + GG SD + ++ N
Sbjct: 276 GWVPLQ----TFTQHQGAVKAVAWCPWQS------------NVLATGGGTSDRH-IRIWN 318
Query: 217 DGRLMLLTTMEGHIHVLD--------------SFRGTLLSTYNVKPVSRNSTLEA----- 257
L+ ++ H V F L + +++ + L+
Sbjct: 319 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 378
Query: 258 ---SFSPEGMFVISGSGDGSVYAW 278
+ SP+G V S + D ++ W
Sbjct: 379 LSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 28 MSFRDYNGRISSMDFHK-SSSYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVDLVCF 84
+F + G + ++ + S+ L T + D IR+++V + CL +++ V + +
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILW 328
Query: 85 TSHPTTVIYSSKNGWDES-LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
+ H +I S +G+ ++ L + + KGH RV+SL++ S + D
Sbjct: 329 SPHYKELI--SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386
Query: 144 TVLLW 148
T+ LW
Sbjct: 387 TLRLW 391
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 94/264 (35%), Gaps = 44/264 (16%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
ISS+ + K +YL + ++L+DV L+ + S V + + S+ + S
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSG 209
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ +R+ H + GH V L SG D V +W A
Sbjct: 210 HIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEG 264
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
G + +Q QG V AVA+ + ++ + GG SD + ++ N
Sbjct: 265 GWVPLQ----TFTQHQGAVKAVAWCPW------------QSNVLATGGGTSDRH-IRIWN 307
Query: 217 DGRLMLLTTMEGHIHVLD--------------SFRGTLLSTYNVKPVSRNSTLEA----- 257
L+ ++ H V F L + +++ + L+
Sbjct: 308 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 367
Query: 258 ---SFSPEGMFVISGSGDGSVYAW 278
+ SP+G V S + D ++ W
Sbjct: 368 LSLTMSPDGATVASAAADETLRLW 391
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 49 LVTASDDESIRLYDVTAATCLKTINSKKYG----VDLVCFTSHPTTVIYSSKNGWDESLR 104
++ ASD ++ L+++ L KY V V S T + SK D ++
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIK 152
Query: 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEK 154
+ L L ++ H +V ++ KD F+S S D +LLWD R K
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 28 MSFRDYNGRISSMDFHK-SSSYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVDLVCF 84
+F + G + ++ + S+ L T + D IR+++V + CL +++ V + +
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILW 248
Query: 85 TSHPTTVIYSSKNGWDES-LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143
+ H +I S +G+ ++ L + + KGH RV+SL++ S + D
Sbjct: 249 SPHYKELI--SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306
Query: 144 TVLLW 148
T+ LW
Sbjct: 307 TLRLW 311
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 94/264 (35%), Gaps = 44/264 (16%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
ISS+ + K +YL + ++L+DV L+ + S V + + S+ + S
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSG 129
Query: 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156
+ +R+ H + GH V L SG D V +W A
Sbjct: 130 HIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEG 184
Query: 157 GLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN 216
G + +Q QG V AVA+ + ++ + GG SD + ++ N
Sbjct: 185 GWVPLQ----TFTQHQGAVKAVAWCPW------------QSNVLATGGGTSDRH-IRIWN 227
Query: 217 DGRLMLLTTMEGHIHVLD--------------SFRGTLLSTYNVKPVSRNSTLEA----- 257
L+ ++ H V F L + +++ + L+
Sbjct: 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 287
Query: 258 ---SFSPEGMFVISGSGDGSVYAW 278
+ SP+G V S + D ++ W
Sbjct: 288 LSLTMSPDGATVASAAADETLRLW 311
>pdb|3P1Y|A Chain A, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|B Chain B, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|C Chain C, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|D Chain D, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
Length = 315
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLV 82
G FR Y ++ S+D S YLV +D IRL D+ A L K+ YG + +
Sbjct: 250 GSEFRVYR-KVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYL 308
Query: 83 CF 84
CF
Sbjct: 309 CF 310
>pdb|1RLV|A Chain A, Crystal Structure Of A Dimeric Archaeal Splicing
Endonuclease
pdb|1RLV|B Chain B, Crystal Structure Of A Dimeric Archaeal Splicing
Endonuclease
pdb|1R0V|A Chain A, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|B Chain B, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|C Chain C, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|D Chain D, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R11|A Chain A, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-Face- Centerd P21 Space Group
pdb|1R11|B Chain B, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-Face- Centerd P21 Space Group
Length = 305
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLV 82
G FR Y ++ S+D S YLV +D IRL D+ A L K+ YG + +
Sbjct: 240 GSEFRVYR-KVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYL 298
Query: 83 CF 84
CF
Sbjct: 299 CF 300
>pdb|2GJW|A Chain A, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|B Chain B, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|C Chain C, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|D Chain D, Rna Recognition And Cleavage By An Splicing Endonuclease
Length = 313
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLV 82
G FR Y ++ S+D S YLV +D IRL D+ A L K+ YG + +
Sbjct: 248 GSEFRVYR-KVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYL 306
Query: 83 CF 84
CF
Sbjct: 307 CF 308
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 30/235 (12%)
Query: 46 SSYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104
S +L++ASDD +I L+D++A K +++K FT H V S + ESL
Sbjct: 190 SGHLLSASDDHTICLWDISAVPKEGKVVDAK------TIFTGHTAVVEDVSWHLLHESLF 243
Query: 105 LLSLHDNKYLRY-------------FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQ 150
D K + + H V LS S+ +GS D+TV LWD
Sbjct: 244 GSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
Query: 151 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDAN 210
R L+++ ++ D+ +F V + + A +++ + I +
Sbjct: 304 RN------LKLKLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLNVWDLSK-IGEEQ 354
Query: 211 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265
+ + DG LL GH + F + + VS ++ ++ E ++
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAW 278
R +L T EG I VLDS L + VS + L+ F P G +IS S D + W
Sbjct: 107 RRFILGTTEGDIKVLDS-NFNLQREIDQAHVSEITKLK--FFPSGEALISSSQDMQLKIW 163
Query: 279 SVRSG 283
SV+ G
Sbjct: 164 SVKDG 168
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
D L++ S+ D R GH V +++ +S SLD T+ LW+
Sbjct: 157 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAW 278
R +L T EG I VLDS L + VS + L+ F P G +IS S D + W
Sbjct: 110 RRFILGTTEGDIKVLDS-NFNLQREIDQAHVSEITKLK--FFPSGEALISSSQDMQLKIW 166
Query: 279 SVRSG 283
SV+ G
Sbjct: 167 SVKDG 171
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149
D L++ S+ D R GH V +++ +S SLD T+ LW+
Sbjct: 160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 317
FSP F+ + DG + W++++ K++ ++ F+ E V+K + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 317
FSP F+ + DG + W++++ K++ ++ F+ E V+K + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV--TAATCLKTINSKKYG 78
++ +EV S D G +S ++L+ S +R ++V + T K
Sbjct: 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP 88
Query: 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD---RVVSLSLCSSKDC 135
V VC++ + V +S D++ ++ L N+ ++ HD + + + C
Sbjct: 89 VLDVCWSDDGSKVFTAS---CDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSC 143
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGR 164
++GS D+T+ WD R+ +L++ R
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 27/78 (34%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
++ + FH L T D +D A T LKT + CF + Y+S
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335
Query: 97 NGWDESLRLLSLHDNKYL 114
W + + Y+
Sbjct: 336 YDWSKGHEFYNPQKKNYI 353
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 317
FSP F+ + DG + W++++ K++ ++ F+ E V+K + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 46 SSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKN 97
+ YL++ASDD +I L+D+ A + I++K FT H V ++ S
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLF 251
Query: 98 GW---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQ 150
G D+ L + +N K H V LS S+ +GS D+TV LWD
Sbjct: 252 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
Query: 151 RAEKCQ 156
R K +
Sbjct: 312 RNLKLK 317
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 48 YLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW 99
YL++ASDD +I L+D+ A + I++K FT H V ++ S G
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLFGS 251
Query: 100 ---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA 152
D+ L + +N K H V LS S+ +GS D+TV LWD R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 153 EKCQ 156
K +
Sbjct: 312 LKLK 315
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 48 YLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTV-------IYSSKNGW 99
YL++ASDD +I L+D+ A + I++K FT H V ++ S G
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKN------IFTGHTAVVEDVAWHLLHESLFGS 249
Query: 100 ---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA 152
D+ L + +N K H V LS S+ +GS D+TV LWD R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 153 EKCQ 156
K +
Sbjct: 310 LKLK 313
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 317
FSP F+ + DG + W++++ K++ ++ F+ E V+K + +S+ +F
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96
++S+ + S+L + + +YDV + T L+T+ + V + + H + S+
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH--VLSSGSR 194
Query: 97 NGWDESLRLLSLHD----NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152
+G + HD N + +GH V L+ S SG D V +WD R+
Sbjct: 195 SG------AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+G + T L++Q +GL G+P + G +
Sbjct: 399 QAAGMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 4 SQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
S S E+K L+ + ++ E+ D+NG + S+ ++ + + L +A DD +RL+
Sbjct: 280 SDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Query: 64 TAAT---CLKTINSKK 76
T + C+ I +++
Sbjct: 336 TYSNEFKCMSVITAQQ 351
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 117 FKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQ 172
++ H +V++ S + S S D+TV LW D E+C G R + D +
Sbjct: 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG--RRWNKLCTLNDSK 110
Query: 173 GLVFAVAFG--------------GYIRMFDA 189
G +++V F G +R++DA
Sbjct: 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDV-----TAATCLKTINSKKYGVDLVCFTSH 87
+NG+++ + F +L+T D +RL++ T K N+ K G+
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303
Query: 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147
+ ++ + ++ + +++ + + KGH+ V S+ SGS D +L
Sbjct: 304 SSEFVFVP---YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 148 W 148
W
Sbjct: 361 W 361
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 4 SQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
S S E+K L+ + ++ E+ D+NG + S+ ++ + + L +A DD +RL+
Sbjct: 278 SDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 333
Query: 64 TAAT---CLKTINSKK 76
T + C+ I +++
Sbjct: 334 TYSNEFKCMSVITAQQ 349
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 117 FKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQ 172
++ H +V++ S + S S D+TV LW D E+C G R + D +
Sbjct: 51 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG--RRWNKLCTLNDSK 108
Query: 173 GLVFAVAFG--------------GYIRMFDA 189
G +++V F G +R++DA
Sbjct: 109 GSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 90/234 (38%), Gaps = 28/234 (11%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV-------IYSSKNG 98
S +L++ASDD ++ L+D+ A I K FT H V ++ S G
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAK-----AIFTGHSAVVEDVAWHLLHESLFG 246
Query: 99 W---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR 151
D+ L + N K H V LS S+ +GS D+TV LWD R
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANV 211
L+++ ++ D+ +F V + + A +++ + I +
Sbjct: 307 N------LKLKLHTFESHKDE--IFQVHWSPHNETILASSGTDRRLNVWDLSK-IGEEQS 357
Query: 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265
+ + DG LL GH + F + + VS ++ ++ E ++
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 411
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 19/125 (15%)
Query: 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV-------IYSSKNG 98
S +L++ASDD ++ L+D+ A I K FT H V ++ S G
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAK-----AIFTGHSAVVEDVAWHLLHESLFG 246
Query: 99 W---DESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQR 151
D+ L + N K H V LS S+ +GS D+TV LWD R
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 152 AEKCQ 156
K +
Sbjct: 307 NLKLK 311
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 37/172 (21%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 197 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 253
Query: 191 --KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 248
K E G + F I D N + + ++ T++G + + + LL P
Sbjct: 254 MWKRELGSVNDF-----IVDGNRIYLVDQNDRVMALTIDGGVTLW--TQSDLLHRLLTSP 306
Query: 249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM----SFDTEP 296
V N L + G +G ++ +V G+ VA F TEP
Sbjct: 307 VLYNGNL-----------VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 347
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 37/172 (21%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 261
Query: 191 --KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 248
K E G + F I D N + + ++ T++G + + + LL P
Sbjct: 262 MWKRELGSVNDF-----IVDGNRIYLVDQNDRVMALTIDGGVTLWT--QSDLLHRLLTSP 314
Query: 249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM----SFDTEP 296
V N L + G +G ++ +V G+ VA F TEP
Sbjct: 315 VLYNGNL-----------VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 355
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 37/172 (21%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 206 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 262
Query: 191 --KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 248
K E G + F I D N + + ++ T++G + + + LL P
Sbjct: 263 MWKRELGSVNDF-----IVDGNRIYLVDQNDRVMALTIDGGVTLWT--QSDLLHRLLTSP 315
Query: 249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM----SFDTEP 296
V N L + G +G ++ +V G+ VA F TEP
Sbjct: 316 VLYNGNL-----------VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 356
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 37/172 (21%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 200 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 256
Query: 191 --KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 248
K E G + F I D N + + ++ T++G + + + LL P
Sbjct: 257 MWKRELGSVNDF-----IVDGNRIYLVDQNDRVMALTIDGGVTLW--TQSDLLHRLLTSP 309
Query: 249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM----SFDTEP 296
V N L + G +G ++ +V G+ VA F TEP
Sbjct: 310 VLYNGNL-----------VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 350
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 37/172 (21%)
Query: 141 LDRTVLLWDQRAEKCQG------LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR---- 190
+++ ++W QR + G L V P G+VFA+A+ G + D R
Sbjct: 222 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQI 278
Query: 191 --KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP 248
K E G + F I D N + + ++ T++G + + + LL P
Sbjct: 279 MWKRELGSVNDF-----IVDGNRIYLVDQNDRVMALTIDGGVTLWT--QSDLLHRLLTSP 331
Query: 249 VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM----SFDTEP 296
V N L + G +G ++ +V G+ VA F TEP
Sbjct: 332 VLYNGNL-----------VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEP 372
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 4 SQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV 63
S S E+K L+ + ++ E+ D+NG + S+ ++ + + L +A DD +RL+
Sbjct: 280 SDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
Query: 64 TAAT---CLKTINSKK 76
T + C I +++
Sbjct: 336 TYSNEFKCXSVITAQQ 351
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 117 FKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQ 172
++ H +V++ S + S S D+TV LW D E+C G R + D +
Sbjct: 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG--RRWNKLCTLNDSK 110
Query: 173 GLVFAVAFG--------------GYIRMFDA 189
G +++V F G +R++DA
Sbjct: 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 24/116 (20%)
Query: 136 FISGSLDRTVLLWD--QRAEKCQGLLRVQGRP---------AAAYDDQGLVFAVAF-GGY 183
++GS D TV +WD Q+ + + VQG AY+ + V + G
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 184 IRMFDAR----KYEKGPFD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234
I++FD R ++E + + S+ D D ++ K ++ T++EG HV D
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNK-------LVATSLEGKFHVFD 240
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 63 VTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ESLRLLSLH 109
VT AT LK V FT H TV +SS+ GW+ + L+ LSLH
Sbjct: 12 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLH 62
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 63 VTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ESLRLLSLH 109
VT AT LK V FT H TV +SS+ GW+ + L+ LSLH
Sbjct: 32 VTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLH 82
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 124 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 182
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 183 QAARMIHSTAGLYNQ---FIKGLDSFSGKPRGSGPPAGPALPI 222
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMMHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 17/182 (9%)
Query: 119 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RVQGRPAAAYDDQGLVF 176
GHH + L + +S S D T+ +W Q Q +A++ V
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI 304
Query: 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD-- 234
+ + G +R++ ++ I D + S DG+ + M+G ++V D
Sbjct: 305 SCSMDGSVRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Query: 235 -------SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS--GSGDGSVYAWSVRSGKE 285
S G N P+ ++ ++S + +F +S +G+ A+S++ G
Sbjct: 361 KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420
Query: 286 VA 287
VA
Sbjct: 421 VA 422
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 165
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178
+ + T L++Q +GL G+P + G +
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKPRGSGPPAGPALPI 438
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135
KYG L CF H + ++ + D L + K + + +GH D + L+ C ++
Sbjct: 340 KYGESL-CFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEES 398
Query: 136 FISGSLDRTVLLWDQRAEKCQGLLRVQGRP 165
+ + T L++Q +GL G+P
Sbjct: 399 QAARMIHSTAGLYNQFI---KGLDSFSGKP 425
>pdb|4DGW|A Chain A, Crystal Structure Of The Sf3a Splicing Factor Complex Of
U2 Snrnp
Length = 402
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 23/181 (12%)
Query: 20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-------- 71
ILQ E+ + RDY + + F+K + T DD+ + ++ K
Sbjct: 86 ILQQHEINIFLRDYQEKQQT--FNKINRPEETQEDDKDLPNFERKLQQLEKELKNEDENF 143
Query: 72 ---INSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS 126
INSKK L +S P+ T I S + D L + D +Y Y + +
Sbjct: 144 ELDINSKKDKYALFSSSSDPSRRTNILSDR-ARDLDLNEIFTRDEQYGEYXELEQFHSLW 202
Query: 127 LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM 186
L++ DC + LD L D + LL P +D+ F + Y+
Sbjct: 203 LNVIKRGDCSLLQFLDILELFLDDE----KYLL---TPPXDRKNDRYXAFLLKLSKYVET 255
Query: 187 F 187
F
Sbjct: 256 F 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,125,515
Number of Sequences: 62578
Number of extensions: 421801
Number of successful extensions: 1855
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 409
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)