Query 020021
Match_columns 332
No_of_seqs 159 out of 1824
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1446 Histone H3 (Lys4) meth 100.0 8.3E-49 1.8E-53 326.4 36.3 306 21-327 1-309 (311)
2 KOG0271 Notchless-like WD40 re 100.0 4.5E-49 9.8E-54 334.6 25.5 289 24-318 105-478 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.4E-47 9.4E-52 326.1 20.7 299 12-320 153-459 (459)
4 KOG0286 G-protein beta subunit 100.0 7.6E-43 1.6E-47 287.5 33.6 287 24-319 45-343 (343)
5 KOG0315 G-protein beta subunit 100.0 3.6E-43 7.7E-48 283.6 27.6 279 47-332 11-300 (311)
6 KOG0279 G protein beta subunit 100.0 5.1E-40 1.1E-44 269.2 30.8 284 24-320 5-312 (315)
7 KOG0316 Conserved WD40 repeat- 100.0 1.3E-39 2.7E-44 261.2 23.7 284 26-319 9-297 (307)
8 KOG0265 U5 snRNP-specific prot 100.0 3E-39 6.6E-44 267.1 26.2 289 24-320 37-335 (338)
9 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-40 8E-45 283.5 19.4 246 24-279 207-458 (459)
10 KOG0318 WD40 repeat stress pro 100.0 2.5E-37 5.4E-42 272.5 33.3 297 24-324 180-561 (603)
11 KOG0271 Notchless-like WD40 re 100.0 3.2E-38 7E-43 268.6 21.1 252 67-326 106-444 (480)
12 KOG0266 WD40 repeat-containing 100.0 1.4E-36 3E-41 283.4 32.5 293 24-321 148-452 (456)
13 KOG0295 WD40 repeat-containing 100.0 1.2E-37 2.6E-42 263.5 22.7 287 23-319 97-404 (406)
14 KOG0285 Pleiotropic regulator 100.0 6E-37 1.3E-41 258.9 23.7 284 24-319 141-437 (460)
15 KOG0263 Transcription initiati 100.0 1.6E-37 3.6E-42 285.5 22.1 249 22-320 367-648 (707)
16 cd00200 WD40 WD40 domain, foun 100.0 4.1E-35 8.9E-40 255.1 35.7 283 27-319 2-289 (289)
17 KOG0263 Transcription initiati 100.0 4.4E-37 9.5E-42 282.7 23.5 212 22-282 439-650 (707)
18 KOG0279 G protein beta subunit 100.0 7.5E-36 1.6E-40 244.8 26.9 261 12-282 41-314 (315)
19 KOG0291 WD40-repeat-containing 100.0 3.6E-35 7.9E-40 268.4 33.8 295 30-332 261-562 (893)
20 KOG0293 WD40 repeat-containing 100.0 3.2E-36 6.9E-41 258.6 21.0 288 25-321 215-513 (519)
21 KOG0645 WD40 repeat protein [G 100.0 6.1E-34 1.3E-38 232.7 31.8 285 23-320 3-310 (312)
22 KOG0288 WD40 repeat protein Ti 100.0 2.6E-36 5.7E-41 259.1 16.2 283 27-318 168-458 (459)
23 KOG0286 G-protein beta subunit 100.0 5.2E-34 1.1E-38 235.4 28.1 241 30-279 93-343 (343)
24 KOG0292 Vesicle coat complex C 100.0 2.9E-35 6.4E-40 272.8 22.8 268 26-313 43-312 (1202)
25 KOG0282 mRNA splicing factor [ 100.0 9.8E-36 2.1E-40 260.1 17.8 287 25-319 205-503 (503)
26 PLN00181 protein SPA1-RELATED; 100.0 2.8E-33 6.1E-38 278.7 37.6 279 30-319 479-791 (793)
27 KOG0315 G-protein beta subunit 100.0 1.2E-33 2.5E-38 228.5 27.9 274 21-301 27-308 (311)
28 KOG0319 WD40-repeat-containing 100.0 2.4E-34 5.3E-39 262.5 26.3 298 21-322 91-578 (775)
29 KOG0273 Beta-transducin family 100.0 1.8E-33 3.8E-38 245.3 27.0 285 28-324 173-485 (524)
30 KOG0273 Beta-transducin family 100.0 1.3E-33 2.7E-38 246.2 24.3 240 24-314 266-514 (524)
31 KOG0647 mRNA export protein (c 100.0 2.3E-33 4.9E-38 232.6 23.3 275 32-312 25-312 (347)
32 KOG0284 Polyadenylation factor 100.0 2.1E-34 4.6E-39 247.1 16.3 274 35-319 97-378 (464)
33 KOG0296 Angio-associated migra 100.0 3.7E-32 7.9E-37 230.5 28.5 287 25-319 55-396 (399)
34 KOG0291 WD40-repeat-containing 100.0 1.4E-31 3.1E-36 244.9 32.1 283 21-314 294-603 (893)
35 KOG0276 Vesicle coat complex C 100.0 3.8E-32 8.1E-37 244.2 24.5 281 24-314 3-290 (794)
36 KOG0295 WD40 repeat-containing 100.0 1.4E-32 3E-37 232.9 20.1 246 25-280 141-405 (406)
37 KOG0318 WD40 repeat stress pro 100.0 2.9E-30 6.3E-35 228.0 33.6 294 23-323 136-519 (603)
38 KOG0313 Microtubule binding pr 100.0 1.9E-31 4.2E-36 227.1 24.1 274 31-319 102-414 (423)
39 KOG0278 Serine/threonine kinas 100.0 1.3E-32 2.8E-37 222.7 15.9 258 18-286 40-302 (334)
40 KOG1036 Mitotic spindle checkp 100.0 6.6E-31 1.4E-35 218.6 25.9 272 34-313 13-294 (323)
41 KOG0306 WD40-repeat-containing 100.0 4.1E-31 8.9E-36 241.8 26.1 278 29-319 368-662 (888)
42 KOG0266 WD40 repeat-containing 100.0 4.5E-31 9.8E-36 246.4 27.0 248 25-281 194-454 (456)
43 KOG0319 WD40-repeat-containing 100.0 4.8E-31 1E-35 241.0 25.7 287 22-319 311-617 (775)
44 KOG0275 Conserved WD40 repeat- 100.0 5.8E-32 1.3E-36 226.3 17.5 283 32-320 211-508 (508)
45 KOG0282 mRNA splicing factor [ 100.0 3.5E-32 7.7E-37 237.9 15.3 257 13-279 238-503 (503)
46 KOG0278 Serine/threonine kinas 100.0 9.1E-32 2E-36 217.8 16.3 281 26-320 6-296 (334)
47 KOG0283 WD40 repeat-containing 100.0 8.1E-31 1.8E-35 243.3 23.5 261 12-322 239-577 (712)
48 KOG0284 Polyadenylation factor 100.0 3.8E-32 8.1E-37 233.3 13.0 264 1-280 112-379 (464)
49 KOG0772 Uncharacterized conser 100.0 2.6E-30 5.6E-35 227.8 23.9 297 14-322 155-489 (641)
50 KOG0276 Vesicle coat complex C 100.0 4.3E-30 9.2E-35 231.0 25.0 244 24-277 45-295 (794)
51 KOG0281 Beta-TrCP (transducin 100.0 7.9E-32 1.7E-36 227.3 13.0 267 33-322 196-478 (499)
52 PTZ00421 coronin; Provisional 100.0 3.8E-29 8.3E-34 233.2 31.9 230 29-305 70-315 (493)
53 KOG0643 Translation initiation 100.0 5.8E-29 1.3E-33 203.3 28.0 278 30-318 6-314 (327)
54 KOG1407 WD40 repeat protein [F 100.0 2.1E-29 4.5E-34 205.2 24.4 275 28-314 14-293 (313)
55 KOG0308 Conserved WD40 repeat- 100.0 1.4E-30 3E-35 235.1 17.5 270 5-322 1-284 (735)
56 KOG0265 U5 snRNP-specific prot 100.0 4.2E-29 9.2E-34 207.1 24.1 249 25-279 81-336 (338)
57 KOG0281 Beta-TrCP (transducin 100.0 1.8E-30 4E-35 219.0 14.0 253 14-285 219-481 (499)
58 KOG2096 WD40 repeat protein [G 100.0 1.3E-28 2.8E-33 205.8 24.6 286 27-318 79-399 (420)
59 KOG0274 Cdc4 and related F-box 100.0 9E-29 2E-33 231.3 26.5 252 25-292 239-493 (537)
60 KOG0274 Cdc4 and related F-box 100.0 1.8E-28 3.8E-33 229.4 28.1 278 28-324 201-485 (537)
61 cd00200 WD40 WD40 domain, foun 100.0 1.2E-27 2.6E-32 208.0 31.7 244 26-279 43-289 (289)
62 KOG0277 Peroxisomal targeting 100.0 2E-29 4.3E-34 204.7 18.0 240 33-280 59-308 (311)
63 PTZ00420 coronin; Provisional 100.0 8.7E-28 1.9E-32 225.5 31.6 239 25-306 65-319 (568)
64 KOG0285 Pleiotropic regulator 100.0 7.7E-29 1.7E-33 209.9 21.5 252 22-281 181-439 (460)
65 KOG0292 Vesicle coat complex C 100.0 4.2E-29 9.1E-34 232.2 21.7 264 31-320 6-279 (1202)
66 KOG0293 WD40 repeat-containing 100.0 3.4E-29 7.3E-34 215.5 18.6 250 22-282 257-514 (519)
67 PLN00181 protein SPA1-RELATED; 100.0 2E-27 4.4E-32 236.8 34.4 244 33-280 531-792 (793)
68 KOG0296 Angio-associated migra 100.0 7.7E-28 1.7E-32 204.3 26.5 246 24-281 96-398 (399)
69 KOG0294 WD40 repeat-containing 100.0 6.5E-28 1.4E-32 201.3 25.0 264 23-301 32-305 (362)
70 KOG1407 WD40 repeat protein [F 100.0 1.1E-28 2.5E-33 200.9 19.9 237 70-317 14-255 (313)
71 KOG0288 WD40 repeat protein Ti 100.0 2.3E-29 5E-34 216.5 16.6 256 14-278 199-458 (459)
72 KOG0289 mRNA splicing factor [ 100.0 7.7E-28 1.7E-32 208.3 25.8 273 35-316 220-499 (506)
73 KOG0316 Conserved WD40 repeat- 100.0 4.3E-28 9.3E-33 195.0 21.5 240 69-320 10-256 (307)
74 KOG0640 mRNA cleavage stimulat 100.0 1.9E-28 4E-33 204.2 19.5 248 27-318 105-423 (430)
75 KOG0310 Conserved WD40 repeat- 100.0 4.9E-28 1.1E-32 212.3 22.9 270 34-314 26-300 (487)
76 KOG0275 Conserved WD40 repeat- 100.0 1.6E-29 3.5E-34 211.7 12.9 242 29-279 258-507 (508)
77 KOG0313 Microtubule binding pr 100.0 1.4E-27 3.1E-32 203.5 23.5 250 23-281 133-418 (423)
78 KOG0310 Conserved WD40 repeat- 100.0 7.4E-28 1.6E-32 211.2 22.0 250 24-282 58-310 (487)
79 KOG0641 WD40 repeat protein [G 100.0 1.1E-26 2.5E-31 185.9 26.6 250 30-320 85-348 (350)
80 KOG0268 Sof1-like rRNA process 100.0 1.7E-28 3.7E-33 208.1 15.6 288 25-328 57-353 (433)
81 KOG0299 U3 snoRNP-associated p 100.0 1.3E-27 2.8E-32 208.3 21.1 248 17-313 183-445 (479)
82 KOG0306 WD40-repeat-containing 100.0 1.2E-26 2.6E-31 212.7 27.4 276 35-320 66-483 (888)
83 KOG0277 Peroxisomal targeting 100.0 2.9E-27 6.3E-32 192.1 19.8 274 38-320 12-308 (311)
84 PTZ00420 coronin; Provisional 100.0 4.3E-26 9.4E-31 214.1 30.1 225 51-323 49-295 (568)
85 PTZ00421 coronin; Provisional 100.0 6.2E-26 1.4E-30 211.7 30.7 241 35-323 21-292 (493)
86 KOG0973 Histone transcription 100.0 2.4E-26 5.2E-31 218.7 26.6 292 30-327 8-361 (942)
87 KOG0645 WD40 repeat protein [G 100.0 7.6E-26 1.6E-30 185.4 25.3 245 24-281 50-311 (312)
88 KOG0305 Anaphase promoting com 100.0 2.9E-26 6.3E-31 207.8 24.1 238 31-320 214-460 (484)
89 KOG0300 WD40 repeat-containing 100.0 3.3E-26 7.1E-31 191.4 21.8 286 24-322 138-477 (481)
90 KOG0301 Phospholipase A2-activ 99.9 6.4E-26 1.4E-30 206.4 24.6 279 23-321 3-288 (745)
91 KOG0267 Microtubule severing p 99.9 1.1E-27 2.3E-32 218.8 9.7 237 29-314 23-259 (825)
92 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.7E-23 1E-27 182.3 36.0 269 46-324 1-282 (300)
93 KOG0643 Translation initiation 99.9 3E-24 6.5E-29 175.8 25.8 235 72-313 6-251 (327)
94 KOG0300 WD40 repeat-containing 99.9 4.8E-25 1E-29 184.5 18.7 254 22-283 178-478 (481)
95 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-22 3.3E-27 179.0 35.4 269 23-303 20-300 (300)
96 KOG0973 Histone transcription 99.9 3E-24 6.5E-29 204.5 24.3 250 26-284 61-358 (942)
97 KOG0289 mRNA splicing factor [ 99.9 7.1E-24 1.5E-28 183.8 24.4 247 25-280 252-505 (506)
98 KOG0640 mRNA cleavage stimulat 99.9 8.1E-25 1.8E-29 182.6 17.4 250 24-280 162-425 (430)
99 KOG0283 WD40 repeat-containing 99.9 1.6E-24 3.4E-29 201.7 20.0 216 24-281 359-576 (712)
100 KOG1332 Vesicle coat complex C 99.9 1.6E-24 3.5E-29 175.3 16.5 254 31-328 8-293 (299)
101 KOG0301 Phospholipase A2-activ 99.9 8.9E-24 1.9E-28 192.6 22.3 249 14-282 37-289 (745)
102 KOG0264 Nucleosome remodeling 99.9 1.1E-23 2.3E-28 183.8 21.7 243 31-321 121-404 (422)
103 KOG0268 Sof1-like rRNA process 99.9 1.8E-24 3.9E-29 183.8 15.9 248 24-285 99-349 (433)
104 KOG0299 U3 snoRNP-associated p 99.9 1.2E-23 2.6E-28 183.6 20.7 244 28-322 136-411 (479)
105 KOG0646 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 183.9 20.4 224 34-304 81-330 (476)
106 KOG0641 WD40 repeat protein [G 99.9 4.1E-22 8.9E-27 159.8 27.1 265 22-322 21-302 (350)
107 KOG0321 WD40 repeat-containing 99.9 1.6E-23 3.4E-28 189.3 20.5 283 32-320 45-390 (720)
108 KOG0772 Uncharacterized conser 99.9 1.8E-23 4E-28 184.8 19.3 239 70-313 161-429 (641)
109 KOG4283 Transcription-coupled 99.9 8.7E-23 1.9E-27 169.4 20.7 259 31-323 98-367 (397)
110 KOG0308 Conserved WD40 repeat- 99.9 1.7E-23 3.7E-28 189.5 17.9 247 26-320 65-326 (735)
111 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-21 4E-26 163.0 28.4 241 71-320 9-261 (311)
112 KOG1063 RNA polymerase II elon 99.9 5.5E-23 1.2E-27 187.4 20.9 306 7-319 233-646 (764)
113 KOG2055 WD40 repeat protein [G 99.9 2.9E-22 6.4E-27 175.1 24.1 278 34-319 213-510 (514)
114 KOG0650 WD40 repeat nucleolar 99.9 1.4E-22 2.9E-27 182.2 21.8 287 24-318 390-732 (733)
115 KOG1274 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 185.6 27.1 268 31-308 10-285 (933)
116 KOG0294 WD40 repeat-containing 99.9 1.9E-21 4.1E-26 162.8 24.9 239 69-323 36-283 (362)
117 KOG0321 WD40 repeat-containing 99.9 1.7E-22 3.6E-27 182.8 19.6 250 28-283 94-393 (720)
118 KOG1408 WD40 repeat protein [F 99.9 1.5E-22 3.2E-27 185.1 18.1 248 33-320 458-712 (1080)
119 KOG1408 WD40 repeat protein [F 99.9 5.9E-22 1.3E-26 181.3 21.4 289 29-320 73-531 (1080)
120 KOG2106 Uncharacterized conser 99.9 8.7E-21 1.9E-25 167.6 28.0 293 27-326 97-526 (626)
121 KOG2106 Uncharacterized conser 99.9 2.2E-20 4.8E-25 165.1 30.1 242 25-280 236-520 (626)
122 KOG1539 WD repeat protein [Gen 99.9 5.3E-21 1.2E-25 177.7 27.4 188 122-318 449-645 (910)
123 KOG0264 Nucleosome remodeling 99.9 3.7E-22 8.1E-27 174.2 18.5 215 23-281 166-404 (422)
124 KOG0639 Transducin-like enhanc 99.9 9.5E-23 2.1E-27 179.8 14.9 231 33-315 464-696 (705)
125 KOG2445 Nuclear pore complex c 99.9 7.4E-21 1.6E-25 158.8 24.6 246 31-280 10-317 (361)
126 KOG1539 WD repeat protein [Gen 99.9 4.1E-20 9E-25 171.9 30.9 302 22-325 190-610 (910)
127 KOG0305 Anaphase promoting com 99.9 2E-21 4.3E-26 176.5 21.2 241 39-332 182-431 (484)
128 KOG0267 Microtubule severing p 99.9 4.6E-23 1E-27 188.7 8.7 221 46-321 4-226 (825)
129 KOG1273 WD40 repeat protein [G 99.9 3E-20 6.4E-25 155.7 23.2 274 37-319 26-320 (405)
130 KOG4227 WD40 repeat protein [G 99.9 1.7E-20 3.7E-25 161.3 21.7 307 19-331 41-396 (609)
131 KOG2096 WD40 repeat protein [G 99.9 6E-21 1.3E-25 160.1 17.9 216 103-322 63-309 (420)
132 KOG4283 Transcription-coupled 99.9 1.6E-20 3.4E-25 156.1 19.4 209 31-285 40-280 (397)
133 KOG0269 WD40 repeat-containing 99.9 2.1E-21 4.6E-26 179.1 15.7 236 36-321 41-296 (839)
134 KOG1332 Vesicle coat complex C 99.9 4.4E-21 9.5E-26 155.5 15.6 212 25-280 47-285 (299)
135 KOG4328 WD40 protein [Function 99.9 4.8E-20 1E-24 161.2 23.1 297 22-320 174-492 (498)
136 KOG0302 Ribosome Assembly prot 99.9 2.1E-20 4.7E-25 159.8 20.0 246 28-319 145-436 (440)
137 KOG1034 Transcriptional repres 99.9 6.6E-21 1.4E-25 160.4 15.3 269 33-322 88-382 (385)
138 KOG0647 mRNA export protein (c 99.9 1.6E-19 3.4E-24 150.5 23.0 236 24-269 62-311 (347)
139 KOG0646 WD40 repeat protein [G 99.9 5.9E-20 1.3E-24 161.0 21.0 234 47-321 51-307 (476)
140 KOG0642 Cell-cycle nuclear pro 99.9 1E-20 2.3E-25 169.2 16.4 259 26-293 286-573 (577)
141 KOG0269 WD40 repeat-containing 99.9 6.7E-21 1.4E-25 175.8 15.5 230 39-314 92-331 (839)
142 KOG2048 WD40 repeat protein [G 99.9 5.4E-19 1.2E-23 161.2 25.5 240 34-319 25-271 (691)
143 COG2319 FOG: WD40 repeat [Gene 99.9 3.4E-17 7.5E-22 149.6 37.9 287 29-323 60-361 (466)
144 KOG0639 Transducin-like enhanc 99.8 3.3E-20 7.2E-25 163.9 15.3 236 32-319 417-661 (705)
145 KOG0644 Uncharacterized conser 99.8 3.3E-21 7.1E-26 179.0 8.8 275 17-313 173-458 (1113)
146 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-19 3.4E-24 159.5 18.8 257 37-305 37-305 (673)
147 KOG1445 Tumor-specific antigen 99.8 1.2E-19 2.6E-24 164.4 18.3 135 14-152 60-201 (1012)
148 KOG2919 Guanine nucleotide-bin 99.8 1.3E-18 2.9E-23 146.4 22.9 278 37-320 52-367 (406)
149 KOG1036 Mitotic spindle checkp 99.8 8.6E-19 1.9E-23 146.6 21.6 229 32-271 52-294 (323)
150 KOG1274 WD40 repeat protein [G 99.8 1E-18 2.2E-23 164.4 24.4 239 74-322 11-263 (933)
151 KOG1063 RNA polymerase II elon 99.8 6.2E-18 1.3E-22 154.7 27.1 289 26-320 46-436 (764)
152 KOG0303 Actin-binding protein 99.8 8.9E-19 1.9E-23 150.8 20.4 246 29-282 76-338 (472)
153 KOG0302 Ribosome Assembly prot 99.8 2.3E-19 5E-24 153.6 16.5 206 75-322 150-379 (440)
154 KOG2055 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 152.6 21.1 245 33-281 256-512 (514)
155 KOG2048 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 152.6 27.6 254 24-322 58-318 (691)
156 COG2319 FOG: WD40 repeat [Gene 99.8 3E-16 6.5E-21 143.3 36.4 291 26-324 100-403 (466)
157 KOG0270 WD40 repeat-containing 99.8 1.5E-18 3.2E-23 151.4 19.6 235 46-286 192-454 (463)
158 KOG1273 WD40 repeat protein [G 99.8 1.6E-18 3.6E-23 145.3 18.9 240 79-324 26-283 (405)
159 KOG1009 Chromatin assembly com 99.8 3.3E-18 7.2E-23 147.8 20.8 277 23-326 54-377 (434)
160 KOG4328 WD40 protein [Function 99.8 5.4E-18 1.2E-22 148.5 20.4 256 62-324 172-453 (498)
161 KOG2445 Nuclear pore complex c 99.8 6.6E-17 1.4E-21 135.4 25.1 243 74-320 11-317 (361)
162 KOG1334 WD40 repeat protein [G 99.8 8.1E-19 1.8E-23 154.7 12.4 299 19-320 127-465 (559)
163 KOG0322 G-protein beta subunit 99.8 3.7E-18 8.1E-23 140.0 15.1 281 28-319 8-321 (323)
164 KOG1034 Transcriptional repres 99.8 1.2E-18 2.6E-23 146.9 12.4 225 23-281 124-383 (385)
165 KOG1310 WD40 repeat protein [G 99.8 2.3E-18 5E-23 153.9 13.3 233 17-287 33-309 (758)
166 PRK11028 6-phosphogluconolacto 99.8 2.3E-15 4.9E-20 135.7 32.5 267 49-321 5-304 (330)
167 KOG1538 Uncharacterized conser 99.8 5.7E-17 1.2E-21 148.0 21.3 268 36-317 14-287 (1081)
168 PRK01742 tolB translocation pr 99.8 2E-16 4.3E-21 147.3 23.5 221 27-304 196-426 (429)
169 KOG4378 Nuclear protein COP1 [ 99.8 1.9E-17 4.2E-22 146.4 15.3 241 9-262 56-304 (673)
170 KOG1538 Uncharacterized conser 99.7 8.3E-17 1.8E-21 147.0 18.0 234 78-326 14-257 (1081)
171 PRK11028 6-phosphogluconolacto 99.7 1.1E-14 2.3E-19 131.3 30.7 253 22-281 23-304 (330)
172 KOG0307 Vesicle coat complex C 99.7 1.4E-17 3E-22 160.2 12.3 273 39-319 11-325 (1049)
173 KOG0307 Vesicle coat complex C 99.7 5.1E-17 1.1E-21 156.3 15.4 242 35-284 65-330 (1049)
174 KOG0771 Prolactin regulatory e 99.7 8.8E-17 1.9E-21 139.8 14.4 201 38-282 148-355 (398)
175 KOG1963 WD40 repeat protein [G 99.7 2.8E-14 6E-19 134.3 29.0 285 31-322 202-539 (792)
176 KOG1517 Guanine nucleotide bin 99.7 6.7E-15 1.4E-19 140.7 24.7 284 34-322 1064-1382(1387)
177 KOG2110 Uncharacterized conser 99.7 2.7E-14 5.9E-19 122.5 26.0 235 35-282 6-249 (391)
178 KOG0270 WD40 repeat-containing 99.7 9.5E-16 2.1E-20 134.1 17.0 204 31-240 240-453 (463)
179 KOG1963 WD40 repeat protein [G 99.7 3.8E-15 8.3E-20 140.1 22.1 274 30-314 12-313 (792)
180 KOG2919 Guanine nucleotide-bin 99.7 1.4E-15 3.1E-20 128.2 17.0 219 44-272 121-361 (406)
181 PRK03629 tolB translocation pr 99.7 3.5E-14 7.5E-19 132.1 27.3 224 28-303 192-427 (429)
182 KOG0649 WD40 repeat protein [G 99.7 3.8E-14 8.3E-19 115.4 23.6 204 29-280 57-273 (325)
183 KOG1188 WD40 repeat protein [G 99.7 8.8E-16 1.9E-20 130.3 14.4 183 100-284 49-245 (376)
184 PRK01742 tolB translocation pr 99.7 1.3E-14 2.8E-19 135.1 22.8 207 55-318 183-398 (429)
185 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-15 3.5E-20 136.2 15.4 275 40-320 234-560 (577)
186 KOG1009 Chromatin assembly com 99.7 1.8E-15 4E-20 131.0 15.1 214 34-313 13-250 (434)
187 KOG1188 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 127.9 14.9 257 24-280 60-345 (376)
188 KOG0290 Conserved WD40 repeat- 99.7 1.5E-14 3.2E-19 120.5 19.2 257 24-325 35-320 (364)
189 KOG1007 WD repeat protein TSSC 99.7 7.6E-15 1.6E-19 122.2 17.3 248 25-322 54-360 (370)
190 KOG0303 Actin-binding protein 99.7 9.5E-16 2.1E-20 132.3 12.2 166 116-321 76-249 (472)
191 KOG0771 Prolactin regulatory e 99.7 1.5E-15 3.3E-20 132.1 13.6 189 80-314 148-345 (398)
192 PRK04922 tolB translocation pr 99.6 1.4E-13 3.1E-18 128.4 25.7 225 27-303 196-432 (433)
193 KOG2111 Uncharacterized conser 99.6 8.3E-13 1.8E-17 111.5 27.1 237 37-282 8-257 (346)
194 KOG4497 Uncharacterized conser 99.6 4.7E-14 1E-18 119.5 18.9 274 40-324 14-394 (447)
195 KOG1272 WD40-repeat-containing 99.6 1.6E-15 3.6E-20 133.3 10.5 231 36-320 131-361 (545)
196 KOG1587 Cytoplasmic dynein int 99.6 1.1E-13 2.4E-18 129.5 22.5 260 56-320 222-515 (555)
197 PRK04922 tolB translocation pr 99.6 1.7E-13 3.8E-18 127.8 22.8 206 56-313 184-398 (433)
198 PRK02889 tolB translocation pr 99.6 7.5E-13 1.6E-17 123.2 26.3 224 27-304 188-425 (427)
199 KOG2110 Uncharacterized conser 99.6 2.4E-12 5.2E-17 110.7 26.8 152 35-190 88-248 (391)
200 KOG2321 WD40 repeat protein [G 99.6 1.8E-13 3.9E-18 123.5 20.9 267 20-326 38-349 (703)
201 KOG1524 WD40 repeat-containing 99.6 3.5E-14 7.6E-19 127.1 16.1 189 22-232 92-282 (737)
202 PRK05137 tolB translocation pr 99.6 1.1E-12 2.4E-17 122.6 26.9 226 25-303 192-432 (435)
203 KOG0650 WD40 repeat nucleolar 99.6 1.7E-13 3.8E-18 124.1 20.3 252 68-332 392-701 (733)
204 KOG0649 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 113.3 15.9 212 36-320 12-234 (325)
205 PRK03629 tolB translocation pr 99.6 2.1E-12 4.6E-17 120.2 27.6 221 56-328 179-413 (429)
206 KOG1445 Tumor-specific antigen 99.6 2E-14 4.4E-19 130.9 12.2 199 35-237 628-845 (1012)
207 PRK05137 tolB translocation pr 99.6 3.1E-12 6.6E-17 119.6 27.0 205 56-312 182-395 (435)
208 PF02239 Cytochrom_D1: Cytochr 99.6 4E-12 8.7E-17 115.4 26.2 279 23-310 25-332 (369)
209 KOG1523 Actin-related protein 99.6 7.9E-13 1.7E-17 111.7 19.6 240 28-313 4-268 (361)
210 KOG3881 Uncharacterized conser 99.6 1.5E-12 3.3E-17 112.7 21.6 289 2-305 21-343 (412)
211 KOG2394 WD40 protein DMR-N9 [G 99.6 1.3E-13 2.9E-18 123.5 15.1 165 121-303 219-384 (636)
212 KOG0322 G-protein beta subunit 99.5 1.8E-13 3.8E-18 112.8 13.9 251 22-280 43-322 (323)
213 KOG0290 Conserved WD40 repeat- 99.5 1.2E-12 2.6E-17 109.3 18.7 232 31-270 93-355 (364)
214 PRK02889 tolB translocation pr 99.5 3.3E-12 7.2E-17 118.9 24.1 206 56-313 176-390 (427)
215 KOG1524 WD40 repeat-containing 99.5 4.6E-13 1E-17 120.0 16.6 256 32-314 12-277 (737)
216 KOG1517 Guanine nucleotide bin 99.5 1.5E-12 3.3E-17 124.9 20.7 242 79-329 1067-1341(1387)
217 PF08662 eIF2A: Eukaryotic tra 99.5 2.5E-12 5.4E-17 106.4 19.7 134 103-288 39-185 (194)
218 KOG1007 WD repeat protein TSSC 99.5 9.4E-13 2E-17 109.8 16.9 217 99-318 38-286 (370)
219 KOG2111 Uncharacterized conser 99.5 2.2E-11 4.8E-16 103.0 25.2 183 8-237 71-257 (346)
220 KOG1240 Protein kinase contain 99.5 3.4E-12 7.3E-17 124.3 23.0 229 24-289 1038-1281(1431)
221 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.6E-16 114.1 26.1 223 27-301 182-416 (417)
222 TIGR02658 TTQ_MADH_Hv methylam 99.5 9.1E-10 2E-14 98.2 33.7 259 24-293 37-342 (352)
223 KOG1587 Cytoplasmic dynein int 99.5 1E-11 2.3E-16 116.4 22.2 242 34-282 242-517 (555)
224 PRK00178 tolB translocation pr 99.5 5.1E-11 1.1E-15 111.3 26.5 225 28-304 192-428 (430)
225 PRK04792 tolB translocation pr 99.5 4.2E-11 9E-16 112.1 25.8 224 28-303 211-446 (448)
226 KOG0644 Uncharacterized conser 99.5 1.8E-13 3.9E-18 128.2 9.3 247 22-286 220-473 (1113)
227 KOG4227 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 106.3 19.5 245 70-319 50-320 (609)
228 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.6E-09 5.6E-14 95.3 33.9 263 56-323 27-332 (352)
229 KOG2139 WD40 repeat protein [G 99.4 2E-11 4.4E-16 104.9 19.5 224 35-311 99-363 (445)
230 TIGR02800 propeller_TolB tol-p 99.4 1.4E-10 3.1E-15 107.9 26.8 206 56-313 170-384 (417)
231 PF02239 Cytochrom_D1: Cytochr 99.4 3.8E-10 8.1E-15 102.6 27.5 255 49-311 9-286 (369)
232 PF10282 Lactonase: Lactonase, 99.4 1.1E-08 2.4E-13 92.7 35.8 270 49-321 2-322 (345)
233 PF08662 eIF2A: Eukaryotic tra 99.4 1.6E-11 3.5E-16 101.6 15.9 115 33-152 58-180 (194)
234 KOG1523 Actin-related protein 99.4 2.5E-11 5.4E-16 102.7 16.9 199 76-319 10-234 (361)
235 KOG1310 WD40 repeat protein [G 99.4 4.9E-12 1.1E-16 113.8 12.1 207 115-322 44-304 (758)
236 PRK00178 tolB translocation pr 99.4 7.5E-10 1.6E-14 103.5 26.0 205 57-313 180-393 (430)
237 KOG2394 WD40 protein DMR-N9 [G 99.4 3.2E-12 7E-17 114.7 9.2 99 30-131 286-384 (636)
238 KOG1354 Serine/threonine prote 99.3 1.6E-10 3.4E-15 98.9 18.6 245 34-283 25-361 (433)
239 KOG1272 WD40-repeat-containing 99.3 3.7E-12 8E-17 112.5 8.8 192 35-232 210-405 (545)
240 KOG0974 WD-repeat protein WDR6 99.3 2.7E-11 5.9E-16 116.4 15.4 200 33-282 86-289 (967)
241 PF10282 Lactonase: Lactonase, 99.3 1.7E-08 3.6E-13 91.5 32.4 275 22-301 25-345 (345)
242 KOG2315 Predicted translation 99.3 2.5E-09 5.5E-14 96.9 26.2 281 36-328 36-397 (566)
243 KOG2139 WD40 repeat protein [G 99.3 8.7E-11 1.9E-15 101.0 15.8 187 123-314 100-302 (445)
244 PRK04792 tolB translocation pr 99.3 2E-09 4.3E-14 100.8 26.4 205 57-313 199-412 (448)
245 PRK01029 tolB translocation pr 99.3 2.8E-09 6.1E-14 99.1 25.7 229 30-304 180-425 (428)
246 KOG1240 Protein kinase contain 99.3 3.2E-10 7E-15 110.8 19.8 215 111-327 1038-1278(1431)
247 KOG4497 Uncharacterized conser 99.3 4.5E-10 9.7E-15 95.7 17.7 279 28-314 85-423 (447)
248 KOG2321 WD40 repeat protein [G 99.3 1.1E-09 2.4E-14 99.4 21.0 236 78-325 53-306 (703)
249 PRK01029 tolB translocation pr 99.2 9.8E-09 2.1E-13 95.5 25.8 223 56-324 165-406 (428)
250 KOG4547 WD40 repeat-containing 99.2 2E-09 4.3E-14 98.1 20.3 189 43-282 2-221 (541)
251 KOG0974 WD-repeat protein WDR6 99.2 3.6E-10 7.8E-15 108.8 16.3 189 123-320 89-287 (967)
252 PLN02919 haloacid dehalogenase 99.2 4.5E-08 9.7E-13 100.2 32.0 253 39-325 572-892 (1057)
253 KOG3881 Uncharacterized conser 99.2 1.8E-09 3.9E-14 93.8 18.2 237 78-322 57-321 (412)
254 KOG4547 WD40 repeat-containing 99.2 1.6E-09 3.4E-14 98.8 18.5 184 131-321 3-220 (541)
255 KOG1334 WD40 repeat protein [G 99.1 5.4E-10 1.2E-14 99.6 11.7 207 114-321 135-366 (559)
256 COG2706 3-carboxymuconate cycl 99.1 1.1E-06 2.5E-11 76.2 30.9 267 31-302 36-345 (346)
257 KOG1064 RAVE (regulator of V-A 99.1 8.9E-10 1.9E-14 111.3 13.5 200 30-290 2204-2407(2439)
258 KOG1409 Uncharacterized conser 99.1 3.4E-09 7.3E-14 90.8 15.0 249 23-283 13-272 (404)
259 KOG4190 Uncharacterized conser 99.1 4.1E-10 9E-15 101.8 9.6 210 28-285 729-952 (1034)
260 TIGR03300 assembly_YfgL outer 99.1 3.2E-07 6.9E-12 84.3 29.0 230 46-294 105-351 (377)
261 PRK04043 tolB translocation pr 99.1 2.2E-07 4.8E-12 86.1 26.7 194 36-282 189-401 (419)
262 KOG4190 Uncharacterized conser 99.0 5.1E-10 1.1E-14 101.3 7.6 200 70-314 729-938 (1034)
263 PF00400 WD40: WD domain, G-be 99.0 8E-10 1.7E-14 66.2 5.9 38 25-62 2-39 (39)
264 COG2706 3-carboxymuconate cycl 99.0 4E-06 8.7E-11 72.9 30.5 270 55-327 15-329 (346)
265 KOG0309 Conserved WD40 repeat- 99.0 3.3E-09 7.2E-14 99.0 12.0 279 34-323 24-341 (1081)
266 KOG1354 Serine/threonine prote 99.0 1.6E-08 3.4E-13 86.9 14.4 266 35-317 85-430 (433)
267 KOG1409 Uncharacterized conser 99.0 1.2E-08 2.6E-13 87.6 13.7 217 14-237 95-395 (404)
268 TIGR03300 assembly_YfgL outer 99.0 1.1E-06 2.3E-11 80.8 27.9 227 46-289 65-305 (377)
269 PLN02919 haloacid dehalogenase 99.0 5.6E-07 1.2E-11 92.3 28.1 223 37-285 626-892 (1057)
270 KOG1832 HIV-1 Vpr-binding prot 99.0 4.4E-10 9.6E-15 106.6 5.2 131 20-156 1087-1219(1516)
271 PRK04043 tolB translocation pr 99.0 7.8E-07 1.7E-11 82.5 26.3 182 78-312 189-386 (419)
272 PF08450 SGL: SMP-30/Gluconola 99.0 9.3E-06 2E-10 69.9 31.3 219 39-270 4-244 (246)
273 KOG3914 WD repeat protein WDR4 98.9 1.8E-08 3.8E-13 88.1 13.3 155 127-289 68-231 (390)
274 KOG3914 WD repeat protein WDR4 98.9 1.9E-08 4.2E-13 87.9 12.9 165 37-246 65-233 (390)
275 PF00400 WD40: WD domain, G-be 98.9 3.2E-09 7E-14 63.4 5.8 38 112-149 2-39 (39)
276 KOG2315 Predicted translation 98.9 5.6E-07 1.2E-11 82.0 22.1 248 38-303 129-410 (566)
277 KOG2314 Translation initiation 98.9 1.2E-06 2.6E-11 79.9 23.1 261 36-313 251-557 (698)
278 KOG0882 Cyclophilin-related pe 98.9 2.8E-08 6.1E-13 88.1 12.5 236 24-289 43-313 (558)
279 KOG4532 WD40-like repeat conta 98.9 1.2E-06 2.7E-11 73.1 21.0 232 47-282 85-332 (344)
280 KOG2041 WD40 repeat protein [G 98.8 3E-07 6.5E-12 86.1 17.5 271 33-311 13-326 (1189)
281 COG5354 Uncharacterized protei 98.8 8.3E-06 1.8E-10 73.8 25.4 267 36-322 73-396 (561)
282 KOG0280 Uncharacterized conser 98.8 2.9E-06 6.2E-11 71.8 20.6 240 36-283 71-335 (339)
283 PF15492 Nbas_N: Neuroblastoma 98.8 1.7E-05 3.6E-10 67.2 24.4 169 124-293 46-271 (282)
284 COG5170 CDC55 Serine/threonine 98.7 1.8E-07 3.8E-12 79.6 11.8 264 34-314 26-358 (460)
285 COG4946 Uncharacterized protei 98.7 6.1E-06 1.3E-10 74.1 20.7 168 87-308 331-503 (668)
286 COG4946 Uncharacterized protei 98.7 0.00021 4.6E-09 64.5 29.9 113 206-322 359-478 (668)
287 KOG1064 RAVE (regulator of V-A 98.7 1.9E-07 4.1E-12 95.1 12.0 186 117-321 2204-2398(2439)
288 PF13360 PQQ_2: PQQ-like domai 98.7 2.9E-05 6.3E-10 66.2 24.3 220 54-287 1-236 (238)
289 PF13360 PQQ_2: PQQ-like domai 98.7 2.4E-05 5.3E-10 66.7 23.8 216 100-323 2-232 (238)
290 PF04762 IKI3: IKI3 family; I 98.7 5.5E-05 1.2E-09 76.6 29.6 246 33-282 208-520 (928)
291 KOG4532 WD40-like repeat conta 98.7 2.9E-06 6.2E-11 70.9 16.7 175 126-305 72-262 (344)
292 COG5354 Uncharacterized protei 98.7 2.9E-06 6.2E-11 76.7 17.9 240 59-312 15-293 (561)
293 PF08450 SGL: SMP-30/Gluconola 98.6 0.00022 4.9E-09 61.3 30.1 216 82-311 5-244 (246)
294 KOG0309 Conserved WD40 repeat- 98.6 3.1E-07 6.8E-12 86.2 11.4 124 26-152 106-233 (1081)
295 PF07433 DUF1513: Protein of u 98.6 1.5E-05 3.2E-10 69.3 20.6 201 27-271 49-276 (305)
296 KOG2695 WD40 repeat protein [G 98.6 3.2E-07 6.9E-12 79.1 9.6 153 137-290 228-385 (425)
297 PF04762 IKI3: IKI3 family; I 98.6 0.00014 3E-09 73.8 29.0 283 33-324 74-459 (928)
298 KOG1275 PAB-dependent poly(A) 98.6 2.4E-06 5.2E-11 82.2 15.3 181 47-234 148-340 (1118)
299 KOG0882 Cyclophilin-related pe 98.5 1.7E-06 3.7E-11 77.1 12.4 238 88-330 20-314 (558)
300 PF15492 Nbas_N: Neuroblastoma 98.5 3.6E-05 7.9E-10 65.2 19.6 190 38-246 47-269 (282)
301 PRK11138 outer membrane biogen 98.5 0.00028 6.1E-09 65.2 26.4 229 46-291 120-363 (394)
302 KOG2314 Translation initiation 98.4 6.9E-05 1.5E-09 68.7 19.1 221 79-312 213-464 (698)
303 KOG2041 WD40 repeat protein [G 98.3 5.1E-05 1.1E-09 71.6 18.0 244 24-282 61-338 (1189)
304 KOG0280 Uncharacterized conser 98.3 1.4E-05 3E-10 67.7 12.6 113 38-152 125-242 (339)
305 PRK11138 outer membrane biogen 98.3 0.00093 2E-08 61.8 25.9 228 46-288 69-319 (394)
306 COG5170 CDC55 Serine/threonine 98.3 7.9E-06 1.7E-10 69.8 10.2 214 35-280 86-366 (460)
307 KOG4714 Nucleoporin [Nuclear s 98.3 9.1E-06 2E-10 67.7 10.3 128 26-153 81-212 (319)
308 KOG1912 WD40 repeat protein [G 98.3 0.00012 2.7E-09 69.7 18.9 240 37-282 18-305 (1062)
309 KOG4714 Nucleoporin [Nuclear s 98.3 6.8E-06 1.5E-10 68.4 9.2 94 57-152 160-255 (319)
310 PF06433 Me-amine-dh_H: Methyl 98.2 0.0033 7.2E-08 55.6 28.3 247 39-293 40-332 (342)
311 KOG1912 WD40 repeat protein [G 98.2 0.0014 2.9E-08 62.9 23.7 125 23-149 44-184 (1062)
312 KOG2695 WD40 repeat protein [G 98.2 1.8E-05 3.9E-10 68.5 9.8 149 50-245 228-385 (425)
313 KOG2114 Vacuolar assembly/sort 98.1 0.0004 8.7E-09 67.0 19.6 196 128-324 30-246 (933)
314 PF11768 DUF3312: Protein of u 98.1 0.00015 3.4E-09 67.2 15.8 73 251-325 259-333 (545)
315 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0047 1E-07 56.2 25.3 95 43-142 1-121 (353)
316 PRK02888 nitrous-oxide reducta 98.1 0.0036 7.9E-08 59.7 24.8 172 100-282 214-405 (635)
317 cd00216 PQQ_DH Dehydrogenases 98.1 0.0086 1.9E-07 57.0 27.6 234 47-290 111-433 (488)
318 smart00320 WD40 WD40 repeats. 98.0 1.5E-05 3.2E-10 46.0 5.1 38 25-62 3-40 (40)
319 KOG1645 RING-finger-containing 98.0 0.00036 7.9E-09 61.8 15.4 83 27-112 186-269 (463)
320 PRK02888 nitrous-oxide reducta 98.0 0.0056 1.2E-07 58.5 24.3 179 129-322 200-405 (635)
321 KOG1920 IkappaB kinase complex 98.0 0.0032 6.9E-08 63.3 22.8 228 78-319 70-320 (1265)
322 PF04841 Vps16_N: Vps16, N-ter 98.0 0.015 3.3E-07 54.0 26.2 190 102-304 62-270 (410)
323 KOG1832 HIV-1 Vpr-binding prot 98.0 7E-06 1.5E-10 78.9 4.1 187 114-313 1094-1286(1516)
324 KOG2066 Vacuolar assembly/sort 97.9 0.00081 1.8E-08 64.5 17.5 175 87-321 48-233 (846)
325 KOG3617 WD40 and TPR repeat-co 97.9 0.00035 7.7E-09 67.3 15.0 111 35-151 16-131 (1416)
326 PF14583 Pectate_lyase22: Olig 97.9 0.012 2.7E-07 53.0 23.6 261 41-313 42-370 (386)
327 PF07433 DUF1513: Protein of u 97.9 0.013 2.8E-07 51.2 27.6 246 39-312 9-275 (305)
328 smart00320 WD40 WD40 repeats. 97.9 3.9E-05 8.5E-10 44.1 5.4 38 112-149 3-40 (40)
329 PF11768 DUF3312: Protein of u 97.9 0.00033 7.1E-09 65.1 13.7 72 206-282 259-330 (545)
330 COG3391 Uncharacterized conser 97.9 0.018 4E-07 52.9 24.8 219 38-262 77-309 (381)
331 KOG2066 Vacuolar assembly/sort 97.9 0.0023 4.9E-08 61.6 18.7 153 30-191 54-234 (846)
332 COG0823 TolB Periplasmic compo 97.8 0.0019 4.2E-08 59.9 17.9 182 78-311 194-387 (425)
333 KOG1645 RING-finger-containing 97.8 0.0025 5.5E-08 56.6 17.2 83 69-154 186-269 (463)
334 PF04053 Coatomer_WDAD: Coatom 97.7 0.005 1.1E-07 57.4 18.4 182 115-317 26-219 (443)
335 PF08596 Lgl_C: Lethal giant l 97.7 0.029 6.2E-07 51.7 22.7 269 36-319 3-333 (395)
336 KOG2114 Vacuolar assembly/sort 97.7 0.0087 1.9E-07 58.2 19.4 194 81-285 28-247 (933)
337 KOG1275 PAB-dependent poly(A) 97.6 0.0022 4.7E-08 62.6 15.3 173 98-279 154-340 (1118)
338 PF06977 SdiA-regulated: SdiA- 97.6 0.032 6.9E-07 47.8 23.2 214 27-278 14-247 (248)
339 KOG1920 IkappaB kinase complex 97.6 0.095 2.1E-06 53.2 26.4 199 35-239 69-325 (1265)
340 PF04053 Coatomer_WDAD: Coatom 97.5 0.043 9.2E-07 51.3 21.6 227 28-281 26-262 (443)
341 COG3386 Gluconolactonase [Carb 97.5 0.043 9.2E-07 48.7 20.0 119 207-329 111-251 (307)
342 COG0823 TolB Periplasmic compo 97.4 0.0063 1.4E-07 56.5 15.3 97 211-312 242-344 (425)
343 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.063 1.4E-06 45.5 26.3 112 46-163 23-135 (354)
344 PF08553 VID27: VID27 cytoplas 97.3 0.079 1.7E-06 52.6 21.4 220 88-316 492-765 (794)
345 PF02897 Peptidase_S9_N: Proly 97.3 0.16 3.6E-06 47.2 30.0 246 36-285 125-408 (414)
346 KOG3621 WD40 repeat-containing 97.3 0.0009 1.9E-08 63.4 7.4 104 209-314 36-145 (726)
347 PF03178 CPSF_A: CPSF A subuni 97.1 0.14 3.1E-06 45.8 19.7 133 143-281 62-202 (321)
348 cd00216 PQQ_DH Dehydrogenases 97.0 0.31 6.8E-06 46.5 27.0 229 46-289 61-382 (488)
349 PF05096 Glu_cyclase_2: Glutam 97.0 0.19 4.2E-06 43.1 21.1 202 22-269 31-249 (264)
350 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.065 1.4E-06 39.4 13.1 100 37-146 2-109 (111)
351 PF03178 CPSF_A: CPSF A subuni 96.9 0.3 6.4E-06 43.8 22.9 176 57-236 3-202 (321)
352 PF00780 CNH: CNH domain; Int 96.9 0.28 6E-06 42.8 25.9 227 44-290 5-264 (275)
353 KOG3621 WD40 repeat-containing 96.8 0.0079 1.7E-07 57.2 9.4 116 209-325 79-201 (726)
354 KOG4640 Anaphase-promoting com 96.8 0.01 2.3E-07 55.8 9.8 92 208-303 22-115 (665)
355 PF06977 SdiA-regulated: SdiA- 96.7 0.32 6.9E-06 41.8 23.2 198 116-315 16-243 (248)
356 COG3386 Gluconolactonase [Carb 96.7 0.42 9.2E-06 42.4 25.5 105 208-313 164-276 (307)
357 PF08553 VID27: VID27 cytoplas 96.7 0.081 1.8E-06 52.5 15.4 97 221-319 545-645 (794)
358 KOG2079 Vacuolar assembly/sort 96.7 0.0087 1.9E-07 59.6 8.7 106 213-320 94-202 (1206)
359 COG3391 Uncharacterized conser 96.7 0.53 1.1E-05 43.3 28.8 245 58-311 13-270 (381)
360 KOG4649 PQQ (pyrrolo-quinoline 96.6 0.36 7.8E-06 41.1 22.0 70 46-118 63-132 (354)
361 KOG1008 Uncharacterized conser 96.6 0.00076 1.7E-08 63.2 0.9 191 123-319 58-273 (783)
362 KOG1008 Uncharacterized conser 96.6 0.00071 1.5E-08 63.4 0.7 200 36-236 58-275 (783)
363 PF12894 Apc4_WD40: Anaphase-p 96.5 0.012 2.6E-07 36.2 5.5 30 34-63 11-40 (47)
364 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.021 4.6E-07 52.0 9.6 94 215-314 1-121 (353)
365 PF04841 Vps16_N: Vps16, N-ter 96.4 0.8 1.7E-05 42.6 28.4 191 40-246 34-256 (410)
366 PF02897 Peptidase_S9_N: Proly 96.4 0.8 1.7E-05 42.6 24.4 220 80-305 127-382 (414)
367 PF12234 Rav1p_C: RAVE protein 96.4 0.27 6E-06 47.6 16.8 114 208-323 31-158 (631)
368 KOG2395 Protein involved in va 96.3 0.27 5.8E-06 45.9 15.5 130 100-235 355-499 (644)
369 KOG3617 WD40 and TPR repeat-co 96.3 0.0073 1.6E-07 58.7 5.6 106 212-322 21-132 (1416)
370 KOG2444 WD40 repeat protein [G 96.1 0.017 3.6E-07 47.9 6.2 103 46-152 70-178 (238)
371 PF12894 Apc4_WD40: Anaphase-p 96.0 0.021 4.6E-07 35.1 4.9 35 251-286 11-45 (47)
372 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.42 9.1E-06 35.2 14.4 64 124-189 2-70 (111)
373 PRK13616 lipoprotein LpqB; Pro 96.0 1.7 3.8E-05 42.4 20.2 178 122-310 350-556 (591)
374 KOG2079 Vacuolar assembly/sort 95.9 0.035 7.6E-07 55.5 8.2 72 207-280 131-202 (1206)
375 KOG4640 Anaphase-promoting com 95.8 0.061 1.3E-06 50.8 9.0 75 36-114 22-97 (665)
376 PRK13616 lipoprotein LpqB; Pro 95.6 0.13 2.9E-06 49.9 11.2 95 208-311 351-465 (591)
377 PF06433 Me-amine-dh_H: Methyl 95.6 1.6 3.5E-05 39.0 27.2 266 56-324 17-323 (342)
378 PHA02713 hypothetical protein; 95.5 2.6 5.7E-05 41.0 19.8 70 215-287 461-539 (557)
379 KOG2395 Protein involved in va 95.5 0.46 1E-05 44.4 13.2 104 209-314 378-492 (644)
380 PF05096 Glu_cyclase_2: Glutam 95.4 1.6 3.4E-05 37.7 19.0 182 123-313 46-251 (264)
381 PF08596 Lgl_C: Lethal giant l 95.3 1.9 4.2E-05 39.8 17.1 229 23-280 75-334 (395)
382 KOG1897 Damage-specific DNA bi 94.9 4.8 0.0001 40.8 28.6 285 32-323 528-858 (1096)
383 KOG2444 WD40 repeat protein [G 94.9 0.12 2.5E-06 43.0 7.1 100 218-320 70-176 (238)
384 COG3490 Uncharacterized protei 94.5 2 4.2E-05 37.3 13.5 55 41-95 120-180 (366)
385 PF14583 Pectate_lyase22: Olig 94.3 4.1 9E-05 37.1 16.4 81 82-162 41-121 (386)
386 PF10313 DUF2415: Uncharacteri 94.2 0.17 3.7E-06 30.3 4.8 30 208-237 2-34 (43)
387 PHA02713 hypothetical protein; 93.8 3.7 7.9E-05 39.9 15.9 23 217-239 512-536 (557)
388 COG3204 Uncharacterized protei 93.8 1.8 4E-05 37.6 12.1 117 203-321 82-210 (316)
389 TIGR03118 PEPCTERM_chp_1 conse 93.7 4.6 0.0001 35.5 25.5 86 216-303 210-307 (336)
390 TIGR02604 Piru_Ver_Nterm putat 93.6 5.6 0.00012 36.4 16.8 101 209-313 74-203 (367)
391 KOG4499 Ca2+-binding protein R 93.6 3.5 7.6E-05 34.8 12.9 48 212-262 217-264 (310)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 7.3 0.00016 37.6 28.2 78 228-310 441-520 (527)
393 KOG4441 Proteins containing BT 93.5 7.9 0.00017 37.8 20.3 227 45-285 284-550 (571)
394 COG3823 Glutamine cyclotransfe 93.5 3.8 8.2E-05 33.9 15.9 169 100-269 67-247 (262)
395 KOG4441 Proteins containing BT 93.5 5.2 0.00011 39.0 16.2 213 101-323 301-548 (571)
396 KOG2377 Uncharacterized conser 93.5 2.2 4.9E-05 39.4 12.6 99 207-307 67-167 (657)
397 TIGR03074 PQQ_membr_DH membran 93.3 10 0.00022 38.3 24.3 229 46-288 194-484 (764)
398 PF14870 PSII_BNR: Photosynthe 93.2 2.2 4.7E-05 37.8 12.1 105 207-317 145-256 (302)
399 KOG1897 Damage-specific DNA bi 93.1 11 0.00025 38.3 22.2 99 208-311 776-886 (1096)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.0 9.3 0.0002 36.9 30.1 110 46-159 69-197 (527)
401 PF07995 GSDH: Glucose / Sorbo 92.8 1.5 3.2E-05 39.5 10.9 103 209-313 4-133 (331)
402 PF10168 Nup88: Nuclear pore c 92.8 5.8 0.00013 39.7 15.6 77 207-284 85-182 (717)
403 PF07569 Hira: TUP1-like enhan 92.8 0.46 1E-05 40.0 7.1 65 258-322 17-96 (219)
404 PHA03098 kelch-like protein; P 92.6 8.2 0.00018 37.3 16.4 53 230-285 458-515 (534)
405 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.81 1.8E-05 26.8 6.1 41 261-302 1-42 (42)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 92.5 1.9 4.1E-05 39.9 11.1 55 23-77 296-350 (415)
407 PF10313 DUF2415: Uncharacteri 92.1 0.84 1.8E-05 27.3 5.5 31 35-65 1-34 (43)
408 PF00780 CNH: CNH domain; Int 92.0 7.5 0.00016 33.7 25.4 224 85-326 4-260 (275)
409 TIGR02604 Piru_Ver_Nterm putat 92.0 5.2 0.00011 36.6 13.5 100 207-312 14-142 (367)
410 COG5167 VID27 Protein involved 91.9 4.4 9.5E-05 38.1 12.4 70 261-331 571-641 (776)
411 PRK10115 protease 2; Provision 91.7 16 0.00034 36.7 32.9 113 35-150 127-254 (686)
412 PF07569 Hira: TUP1-like enhan 91.3 1.2 2.7E-05 37.4 7.9 71 212-283 16-97 (219)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 91.1 2.5 5.4E-05 39.2 10.3 83 208-291 309-408 (415)
414 COG3490 Uncharacterized protei 90.4 1 2.2E-05 39.0 6.5 59 258-316 120-184 (366)
415 KOG2377 Uncharacterized conser 90.0 2.2 4.8E-05 39.4 8.6 99 33-136 65-168 (657)
416 PF11715 Nup160: Nucleoporin N 89.5 1.9 4.1E-05 41.8 8.6 74 216-289 156-256 (547)
417 PHA02790 Kelch-like protein; P 89.3 20 0.00044 34.1 18.3 63 216-284 406-473 (480)
418 KOG1916 Nuclear protein, conta 89.2 0.12 2.5E-06 51.1 0.0 118 30-150 128-264 (1283)
419 COG3204 Uncharacterized protei 88.7 16 0.00034 32.0 20.1 43 32-74 83-125 (316)
420 TIGR03606 non_repeat_PQQ dehyd 88.6 22 0.00047 33.5 15.7 56 208-263 31-90 (454)
421 PF11715 Nup160: Nucleoporin N 88.6 1.1 2.4E-05 43.4 6.3 38 35-72 215-256 (547)
422 COG5290 IkappaB kinase complex 88.3 22 0.00047 35.6 14.2 197 119-317 110-362 (1243)
423 PF13449 Phytase-like: Esteras 87.5 21 0.00045 32.1 15.9 102 208-310 86-231 (326)
424 PHA03098 kelch-like protein; P 87.4 29 0.00062 33.5 17.5 175 131-313 293-496 (534)
425 PF08728 CRT10: CRT10; InterP 87.1 15 0.00033 36.4 12.8 104 216-321 112-244 (717)
426 KOG1983 Tomosyn and related SN 86.9 24 0.00053 36.9 14.9 31 35-65 36-66 (993)
427 KOG2280 Vacuolar assembly/sort 86.7 35 0.00077 33.9 17.0 93 207-313 217-315 (829)
428 KOG2280 Vacuolar assembly/sort 85.7 38 0.00082 33.7 14.4 51 252-303 217-269 (829)
429 PF10647 Gmad1: Lipoprotein Lp 85.5 23 0.00049 30.5 16.8 103 210-313 69-185 (253)
430 PF14870 PSII_BNR: Photosynthe 85.5 26 0.00056 31.1 22.9 106 207-315 187-297 (302)
431 PLN00033 photosystem II stabil 84.9 33 0.00071 31.8 15.6 105 207-315 281-392 (398)
432 PF10647 Gmad1: Lipoprotein Lp 84.4 26 0.00056 30.2 22.2 149 123-273 25-187 (253)
433 PF10395 Utp8: Utp8 family; I 84.4 45 0.00097 33.0 17.2 157 34-191 129-306 (670)
434 KOG1916 Nuclear protein, conta 84.3 0.86 1.9E-05 45.4 2.9 105 210-319 187-321 (1283)
435 PF12234 Rav1p_C: RAVE protein 83.9 12 0.00027 36.6 10.5 109 36-149 31-154 (631)
436 KOG4499 Ca2+-binding protein R 83.2 27 0.00059 29.6 17.8 103 210-312 161-274 (310)
437 PF15390 DUF4613: Domain of un 81.8 51 0.0011 31.9 13.2 70 210-281 116-186 (671)
438 PF10168 Nup88: Nuclear pore c 81.5 63 0.0014 32.6 19.2 93 33-152 83-180 (717)
439 PF07250 Glyoxal_oxid_N: Glyox 80.4 22 0.00049 30.4 9.8 111 213-323 73-199 (243)
440 TIGR03606 non_repeat_PQQ dehyd 78.9 59 0.0013 30.7 15.2 35 119-153 27-61 (454)
441 KOG2109 WD40 repeat protein [G 78.9 7.7 0.00017 37.6 7.0 77 22-98 303-390 (788)
442 TIGR03074 PQQ_membr_DH membran 78.8 80 0.0017 32.1 19.6 72 46-118 260-353 (764)
443 COG3823 Glutamine cyclotransfe 78.8 37 0.00081 28.3 14.7 172 132-313 55-249 (262)
444 TIGR02276 beta_rpt_yvtn 40-res 78.7 10 0.00022 21.8 6.0 31 44-74 1-32 (42)
445 PF12657 TFIIIC_delta: Transcr 77.7 22 0.00047 28.6 8.7 30 253-282 87-122 (173)
446 PF03088 Str_synth: Strictosid 77.3 23 0.0005 25.1 8.2 41 225-269 34-74 (89)
447 smart00564 PQQ beta-propeller 75.8 7.7 0.00017 21.1 4.0 24 265-288 8-31 (33)
448 KOG4460 Nuclear pore complex, 74.8 29 0.00064 33.0 9.4 27 35-61 104-130 (741)
449 PF01436 NHL: NHL repeat; Int 74.0 9.2 0.0002 20.3 3.8 24 210-233 5-28 (28)
450 PF07676 PD40: WD40-like Beta 73.7 14 0.00031 21.0 5.8 33 29-61 3-38 (39)
451 PLN00033 photosystem II stabil 71.6 87 0.0019 29.1 17.9 68 208-278 329-396 (398)
452 PF15390 DUF4613: Domain of un 70.7 1.1E+02 0.0023 29.8 14.0 117 204-320 54-183 (671)
453 PF08801 Nucleoporin_N: Nup133 70.3 94 0.002 28.9 13.7 30 208-237 191-220 (422)
454 TIGR02171 Fb_sc_TIGR02171 Fibr 70.2 36 0.00079 34.7 9.5 87 217-306 318-411 (912)
455 PHA02790 Kelch-like protein; P 69.6 1.1E+02 0.0023 29.3 14.4 105 45-156 318-428 (480)
456 KOG4460 Nuclear pore complex, 69.4 71 0.0015 30.6 10.5 79 208-286 105-203 (741)
457 PF05694 SBP56: 56kDa selenium 68.8 1E+02 0.0022 28.9 21.2 181 43-223 138-390 (461)
458 PF08801 Nucleoporin_N: Nup133 68.4 1E+02 0.0022 28.7 15.8 29 254-282 192-220 (422)
459 KOG3630 Nuclear pore complex, 66.6 18 0.0004 37.5 6.7 106 209-314 103-219 (1405)
460 KOG4659 Uncharacterized conser 65.7 2E+02 0.0044 31.1 19.7 25 294-318 662-686 (1899)
461 PF07995 GSDH: Glucose / Sorbo 65.0 36 0.00077 30.7 7.9 60 217-276 270-330 (331)
462 PF05694 SBP56: 56kDa selenium 65.0 1.2E+02 0.0027 28.4 25.9 194 45-238 86-344 (461)
463 PRK13684 Ycf48-like protein; P 65.0 1.1E+02 0.0023 27.6 16.0 107 34-147 172-284 (334)
464 PF08728 CRT10: CRT10; InterP 64.2 76 0.0017 31.8 10.3 112 37-150 103-245 (717)
465 COG4590 ABC-type uncharacteriz 63.7 90 0.0019 29.4 9.9 164 116-285 215-390 (733)
466 PF14761 HPS3_N: Hermansky-Pud 63.1 28 0.0006 29.1 6.1 49 264-313 29-79 (215)
467 PF14727 PHTB1_N: PTHB1 N-term 62.9 1.3E+02 0.0029 28.1 16.9 146 130-279 34-202 (418)
468 PF14779 BBS1: Ciliary BBSome 62.4 27 0.00059 30.1 6.2 59 219-278 196-255 (257)
469 KOG1900 Nuclear pore complex, 62.0 1.2E+02 0.0026 32.4 11.5 80 202-282 174-273 (1311)
470 PF01011 PQQ: PQQ enzyme repea 61.8 25 0.00055 20.0 4.3 25 266-290 3-27 (38)
471 KOG3616 Selective LIM binding 61.0 47 0.001 33.2 8.0 31 123-153 16-46 (1636)
472 PF01731 Arylesterase: Arylest 60.7 48 0.001 23.3 6.2 29 254-282 56-85 (86)
473 PF10214 Rrn6: RNA polymerase 60.6 2E+02 0.0044 29.4 13.5 122 207-328 80-239 (765)
474 PLN02193 nitrile-specifier pro 59.9 1.6E+02 0.0035 28.0 16.9 68 216-285 327-414 (470)
475 PF13570 PQQ_3: PQQ-like domai 59.7 17 0.00036 21.0 3.3 21 262-282 20-40 (40)
476 KOG1898 Splicing factor 3b, su 58.2 87 0.0019 32.6 9.6 83 219-301 550-640 (1205)
477 PF12657 TFIIIC_delta: Transcr 56.9 72 0.0016 25.6 7.6 30 122-151 86-121 (173)
478 PRK10115 protease 2; Provision 56.7 2.2E+02 0.0048 28.6 27.7 74 78-153 128-209 (686)
479 COG5167 VID27 Protein involved 56.5 32 0.0007 32.7 5.9 60 45-108 572-631 (776)
480 COG4257 Vgb Streptogramin lyas 56.3 1.4E+02 0.0031 26.2 9.5 98 210-311 65-165 (353)
481 PF14761 HPS3_N: Hermansky-Pud 56.1 53 0.0012 27.4 6.7 100 219-322 29-164 (215)
482 KOG2247 WD40 repeat-containing 55.3 2.3 5.1E-05 39.6 -1.4 106 37-147 77-184 (615)
483 PF13449 Phytase-like: Esteras 54.5 1.6E+02 0.0035 26.3 11.0 59 37-96 87-166 (326)
484 KOG0783 Uncharacterized conser 54.0 1.8E+02 0.0039 29.7 10.7 36 29-68 225-260 (1267)
485 PF07250 Glyoxal_oxid_N: Glyox 53.6 59 0.0013 27.9 6.8 82 230-314 48-138 (243)
486 PF01731 Arylesterase: Arylest 53.3 18 0.00039 25.4 3.1 29 36-64 55-84 (86)
487 KOG1900 Nuclear pore complex, 52.7 63 0.0014 34.3 7.9 35 118-152 239-273 (1311)
488 KOG3630 Nuclear pore complex, 51.9 38 0.00083 35.4 6.1 114 37-152 103-229 (1405)
489 TIGR03118 PEPCTERM_chp_1 conse 51.0 1.4E+02 0.003 26.6 8.6 71 210-280 26-117 (336)
490 KOG3616 Selective LIM binding 50.6 44 0.00096 33.3 6.1 33 253-285 16-48 (1636)
491 COG5276 Uncharacterized conser 50.4 1.8E+02 0.004 25.8 18.8 136 178-322 102-242 (370)
492 KOG1898 Splicing factor 3b, su 48.5 3.5E+02 0.0076 28.5 15.6 175 98-280 850-1047(1205)
493 PF05935 Arylsulfotrans: Aryls 46.6 1.5E+02 0.0032 28.3 9.1 73 212-289 153-239 (477)
494 KOG2103 Uncharacterized conser 44.6 1.3E+02 0.0029 30.4 8.3 79 208-294 37-116 (910)
495 TIGR03032 conserved hypothetic 42.8 1.3E+02 0.0029 26.8 7.4 73 232-314 189-261 (335)
496 PF06739 SBBP: Beta-propeller 40.7 60 0.0013 18.6 3.5 22 35-56 13-34 (38)
497 PF11635 Med16: Mediator compl 39.8 1E+02 0.0022 31.4 7.1 69 208-276 261-345 (753)
498 TIGR03548 mutarot_permut cycli 39.4 2.7E+02 0.0059 24.6 15.2 27 213-239 167-197 (323)
499 COG1520 FOG: WD40-like repeat 38.4 3.1E+02 0.0066 24.9 18.8 186 100-291 77-278 (370)
500 PF14269 Arylsulfotran_2: Aryl 38.1 2.9E+02 0.0062 24.5 10.5 74 208-281 145-220 (299)
No 1
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-49 Score=326.39 Aligned_cols=306 Identities=48% Similarity=0.828 Sum_probs=285.4
Q ss_pred HhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
|.+++..|.|+.-.+.|++|.|+++|.+|++++.|-+++|||..++++++++..+.+++..++|..+...++.++. ..|
T Consensus 1 l~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d 79 (311)
T KOG1446|consen 1 LRSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KED 79 (311)
T ss_pred CcccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCC
Confidence 4578899999999999999999999999999999999999999999999999999999999999999988888775 679
Q ss_pred ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (332)
.+||..++.++++++.+.||.+.|++++.+|-++.|+|+|.|++|++||++..+|...+.....+.++++|.|.+++++.
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-EEEEEECccCCCCCeeEEEec-CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 181 GG-YIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 181 ~~-~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
++ .|++||+|.+..+|+..+.+. +.....+.+.|||||++++.++..+.+++.|..+|.++.++..++...+.....+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 65 999999999999999988876 4456789999999999999999999999999999999999988776665567889
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEecC-CCCCCceEEeCCCeeEEEeccceEEEeccccccccc
Q 020021 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLGA 327 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~~~ 327 (332)
|+||++++++|+.||+|.+|++++++.+..+.+ +..++.++.|+|.-.+++|+++.+.+|.|+...+..
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~~ 309 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALPA 309 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccCC
Confidence 999999999999999999999999999999887 688999999999999999999999999998776654
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-49 Score=334.60 Aligned_cols=289 Identities=24% Similarity=0.402 Sum_probs=251.4
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
++.-..+.||.++|.|++|+|+|..|+||+.|.|+|+||+++...+++.++|...|.+++|+|+++.+++++. |++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I 181 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSI 181 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeE
Confidence 3445568899999999999999999999999999999999999999999999999999999999999999876 8899
Q ss_pred EEEEccCCce-EEEeecccccEEEEEecC-----CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeE
Q 020021 104 RLLSLHDNKY-LRYFKGHHDRVVSLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLV 175 (332)
Q Consensus 104 ~v~d~~~~~~-~~~~~~h~~~V~~v~~~~-----~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~ 175 (332)
++||.++|++ .+.|.||...|++++|.| ..++|||+|.||+|+|||...+.|+..+..+..+ +..+--++.+
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 9999998775 568999999999999975 4579999999999999999999988777655443 4455556788
Q ss_pred EEEEeCCEEEEEECccCC------------------------CC------------------------------------
Q 020021 176 FAVAFGGYIRMFDARKYE------------------------KG------------------------------------ 195 (332)
Q Consensus 176 ~~~~~~~~i~vwd~~~~~------------------------~~------------------------------------ 195 (332)
++++.|++|++|+..... .+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 888889999999754310 00
Q ss_pred ---CeeE------------EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021 196 ---PFDI------------FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 196 ---~~~~------------~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s 260 (332)
.+.+ ....+|+.-|+.+.||||++++++++.|..|++||.++|+.+.+|+ +|...+..++||
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvaws 418 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWS 418 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEec
Confidence 0001 1234566788999999999999999999999999999999999888 567889999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021 261 PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
.|.+.|++||.|.++++|++++.+....+.+|..+|.++.|+|||..+++|+.| +++|
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 999999999999999999999999888999999999999999999999999999 6666
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.4e-47 Score=326.09 Aligned_cols=299 Identities=24% Similarity=0.319 Sum_probs=260.7
Q ss_pred ceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccC--CC
Q 020021 12 VSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PT 89 (332)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~ 89 (332)
++.+.....+.++.+.....|-+.+|..+.||+|+..|||||++|.+++|+..+.+.++++.+|...+..+.|+|. ..
T Consensus 153 ~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 153 LSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred hHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcc
Confidence 3344444556778888888899999999999999999999999999999999999999999999999999999998 34
Q ss_pred EEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeE
Q 020021 90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAA 167 (332)
Q Consensus 90 ~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~ 167 (332)
.+++++ .|+++++|++.+..++..+.||..+|..++|+|+|++|+|+|.|.+-++||++++........+ +....
T Consensus 233 ~lat~s---~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 233 NLATAS---ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred ceeeec---cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 666665 4999999999999999999999999999999999999999999999999999987654443333 34567
Q ss_pred EEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021 168 AYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (332)
Q Consensus 168 ~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (332)
++.++|.+++ ++.|..=||||+|+.+ .+.-+++|..+|..|.|||+|..+++|+.|++++|||++....+.++
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-- 383 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-- 383 (459)
T ss_pred EecCCCceeeccCccchhheeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec--
Confidence 8888876655 5568899999999754 23455679899999999999999999999999999999987776554
Q ss_pred cCCCCCcceEEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 247 KPVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 247 ~~~~~~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
+.|.+-|..|.|+| .|+||+|+|.|++++||...+..+++++.+|.+.|-++.++||+..++|++.| +++|.+
T Consensus 384 -pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 384 -PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred -ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 36789999999999 79999999999999999999999999999999999999999999999999999 777754
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.6e-43 Score=287.51 Aligned_cols=287 Identities=18% Similarity=0.291 Sum_probs=250.5
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
++..++|+||.+.|.++.|++|+++|+|+|.||.++|||.-+.+..+.++....+|..++|+|.++.++.+ |.|+.+
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG---GLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG---GLDNKC 121 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec---CcCcee
Confidence 55569999999999999999999999999999999999999999999999888899999999999988875 679999
Q ss_pred EEEEccCC------ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcC-CC-
Q 020021 104 RLLSLHDN------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD-QG- 173 (332)
Q Consensus 104 ~v~d~~~~------~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~-~~- 173 (332)
.+|++.+. +..+.+.+|++.+.++.|-+ ..+++|+|.|.++.+||+++++....+..+.-. ...+.| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99999865 23567899999999999987 558999999999999999999988888765433 333444 33
Q ss_pred eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021 174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (332)
Q Consensus 174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (332)
.+++++-|+..++||+|... ......+|.++|++++|.|+|.-+++|++|+++++||++..+.+..|... .-...
T Consensus 201 tFvSg~cD~~aklWD~R~~~----c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQ----CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICG 275 (343)
T ss_pred eEEecccccceeeeeccCcc----eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCC
Confidence 56677789999999999742 33455688899999999999999999999999999999998888777632 33457
Q ss_pred ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
+++++||..|++|++|..|.++.+||.-.++.+..+.+|..+|++|..+|||..++|||=| +++|.
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 7899999999999999999999999999999999999999999999999999999999987 77773
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-43 Score=283.56 Aligned_cols=279 Identities=20% Similarity=0.270 Sum_probs=231.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc--eEEEeecccccE
Q 020021 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YLRYFKGHHDRV 124 (332)
Q Consensus 47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~--~~~~~~~h~~~V 124 (332)
-+|+|+|+|.|||+|.+.+|.|..+++..+..|..++++|++..++.++ ...||+||+.+++ ++.++.+|++.|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCce
Confidence 5899999999999999999999999998888999999999999888764 5789999998865 589999999999
Q ss_pred EEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEe
Q 020021 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSV 202 (332)
Q Consensus 125 ~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~ 202 (332)
+++.|..+|+.++|||.||++||||++...|...++... .+..+.++ ++.++++.-+|.|++||++...-. ....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~---~~li 163 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT---HELI 163 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc---cccC
Confidence 999999999999999999999999999988877776543 34556665 456777777899999999864211 1111
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE---EeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021 203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS---TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 203 ~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd 279 (332)
......++++++.|||++++.+...|+.++|++....-.. ...-...|...+..+.||||++|||++|+|.+++||+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 1233578999999999999999999999999986643221 1111234667888999999999999999999999999
Q ss_pred CCCC-ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc-cccccccccccC
Q 020021 280 VRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRK 332 (332)
Q Consensus 280 ~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~-~~~~~~~~~~~~ 332 (332)
..+- +.-..+..|...++..+||.|+++|+||++| .++|++ ..+++.+|.||.
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 9876 3345578999999999999999999999998 999997 556688888873
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-40 Score=269.24 Aligned_cols=284 Identities=18% Similarity=0.314 Sum_probs=234.0
Q ss_pred ccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcC-----CCeeeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN 97 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 97 (332)
+.+..+|++|++.|..++..+.+ +.+++++.|+++.+|++. .|...+.+.+|...|..+.+++++.+.++++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s-- 82 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS-- 82 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc--
Confidence 45677899999999999998774 789999999999999885 4677888999999999999999999888764
Q ss_pred CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC----ceeEEEcCC-
Q 020021 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQ- 172 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~- 172 (332)
||+++|+||+++++..+.|.||+..|.+++|++|+++++|||+|++|++|+...+... ++.... ..++.++|.
T Consensus 83 -wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 83 -WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred -ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcCcEEEEEEcCCC
Confidence 6999999999999999999999999999999999999999999999999998655433 332222 346677765
Q ss_pred --CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021 173 --GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250 (332)
Q Consensus 173 --~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (332)
..+++++.|++|++||+++.+.. ....+|...++.+++||||+++++|+.||.+.+||+..++.+..+. +
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~----~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a 232 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLR----TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----A 232 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchh----hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----C
Confidence 35666778999999999876432 1234677789999999999999999999999999999999887764 4
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC---------CCCceEEeCCCeeEEEeccce--EEEec
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~---------~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
...+.+++|+|+...|+.+ .+..|+|||+.++..+.++.... .....++|++||..|.+|..| +++|.
T Consensus 233 ~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 5678899999987666555 56779999999988877664221 122558899999999998777 77775
Q ss_pred c
Q 020021 320 P 320 (332)
Q Consensus 320 ~ 320 (332)
.
T Consensus 312 v 312 (315)
T KOG0279|consen 312 V 312 (315)
T ss_pred e
Confidence 4
No 7
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=261.16 Aligned_cols=284 Identities=22% Similarity=0.341 Sum_probs=232.8
Q ss_pred ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
-...|..|+++|.++.|+-||+|.+|++.|++||+|+...+.+++++.+|...|..++.+.+..++.++ |-|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~---GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC---GGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC---CCCceEEE
Confidence 345689999999999999999999999999999999999999999999999999999999998888765 34999999
Q ss_pred EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE--EEEecCceeEEE-cCCCeEEEEEeCC
Q 020021 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAY-DDQGLVFAVAFGG 182 (332)
Q Consensus 106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~ 182 (332)
||+++|+.++.++||.+.|+.+.|+.+...++|||.|.++++||.++..... .+.......... -....+++++.||
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 9999999999999999999999999999999999999999999998765433 221111111111 2355678888899
Q ss_pred EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
++|.||+|..+.. ...--.++++++||+||...++++.|+++++.|-.+|+++..+..+-.. ..-..++++..
T Consensus 166 tvRtydiR~G~l~------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-eykldc~l~qs 238 (307)
T KOG0316|consen 166 TVRTYDIRKGTLS------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-EYKLDCCLNQS 238 (307)
T ss_pred cEEEEEeecceee------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-eeeeeeeeccc
Confidence 9999999875321 1111137899999999999999999999999999999999888743211 22235678888
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEecCCCCC-CceEEeCCCeeEEEecc-ceEEEec
Q 020021 263 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTE-PPVIKWTPGSLMFVTGS-SELSFWI 319 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~t~~-~d~~~w~ 319 (332)
..++++||+||.+++||+.+...+..+..+... +..++++|...-|.++. .-..+|.
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 899999999999999999999999888888876 78999999875555543 3366663
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3e-39 Score=267.13 Aligned_cols=289 Identities=20% Similarity=0.322 Sum_probs=241.3
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 102 (332)
..+.+.+.+|.+.|..+.|+|+|..|||||.|+.|.+|++.. -+..-++++|..+|..+.|.+++..+++++. |.+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~ 113 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKT 113 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---Cce
Confidence 445677899999999999999999999999999999999752 2334567899999999999999999998865 899
Q ss_pred eEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEE-cCCCeEEEEE
Q 020021 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAY-DDQGLVFAVA 179 (332)
Q Consensus 103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 179 (332)
++.||+++|++++.+++|.+-|+.++-+.-|- ++.|++.|+++|+||+++..++.++..... ..+.+ +....+++++
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence 99999999999999999999999998655443 677999999999999998888777733222 22333 3466889999
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC----eEeEEeeecCCCC--Cc
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVSR--NS 253 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~--~~ 253 (332)
.|+.|++||+|... ..+.+.||...|+.+..||+|.++++.+.|.++++||.+-- .++..+..+ .|+ ..
T Consensus 194 Idn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfekn 268 (338)
T KOG0265|consen 194 IDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKN 268 (338)
T ss_pred ccCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc-hhhhhhh
Confidence 99999999998643 24566788889999999999999999999999999998532 224444332 222 23
Q ss_pred ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEecc
Q 020021 254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 320 (332)
Q Consensus 254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~ 320 (332)
-..++|||+++++.+|+.|+.+++||......+..+.+|.+.|+++.|+|...++.++++|.+++.-
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 3468999999999999999999999998888899999999999999999999999999999888753
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-40 Score=283.46 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=222.7
Q ss_pred ccceeEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 24 MEVGMSFRDYNGRISSMDFHKS--SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~d--g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
.....+|+||++.|.++.|+|. +..||||+.||++++|++++.+.+..+.+|...|..++|+|+|+++.+++. |.
T Consensus 207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---D~ 283 (459)
T KOG0272|consen 207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF---DS 283 (459)
T ss_pred cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc---cc
Confidence 4778899999999999999997 568999999999999999999999999999999999999999999998864 89
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCCeEEE-E
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFA-V 178 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~ 178 (332)
+.|+||+++++.+.-..||...|.+++|++||..++|||.|..-++||+++++|+-.+..+.+ -.+.++|+|..++ +
T Consensus 284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred chhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence 999999999998888899999999999999999999999999999999999999988866544 3578889997665 4
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
+.|++++|||+|.... .+....|..-|+.|+|+| .|.+|++++.|++++||...++.++..+. +|.+.|.++
T Consensus 364 s~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa---GHe~kV~s~ 436 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA---GHEGKVISL 436 (459)
T ss_pred CCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc---CCccceEEE
Confidence 5689999999986532 566667888899999998 78999999999999999999999888776 678999999
Q ss_pred EECCCCCEEEEEcCCCcEEEEE
Q 020021 258 SFSPEGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 258 ~~spdg~~l~sgs~Dg~i~vWd 279 (332)
+++||+++++|++.|++|++|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 9999999999999999999995
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-37 Score=272.47 Aligned_cols=297 Identities=18% Similarity=0.346 Sum_probs=238.4
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee---ecccceeEEEEccCCCEEEEecCCCCC
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
+++..+++.|..-|+++.|+|||++++|+|.|+++.|||-.+++.+..+. +|...|..++|+|+++++++++. |
T Consensus 180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa---D 256 (603)
T KOG0318|consen 180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA---D 256 (603)
T ss_pred eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC---C
Confidence 67888999999999999999999999999999999999999999999998 78889999999999999998864 8
Q ss_pred ceeEEEEccCCceE-------------------------------------------EEeecccccEEEEEecCCCCeEE
Q 020021 101 ESLRLLSLHDNKYL-------------------------------------------RYFKGHHDRVVSLSLCSSKDCFI 137 (332)
Q Consensus 101 ~~v~v~d~~~~~~~-------------------------------------------~~~~~h~~~V~~v~~~~~~~~l~ 137 (332)
.++|+||+.+++.+ +.+.||...|+++..++++++|.
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 89999999877543 33569999999999999999999
Q ss_pred EeeCCCcEEEEeCCCceEEEEE-Eec--CceeEEEcCCCeEEEEEeCCEEEEEECccCC----------CCCe-------
Q 020021 138 SGSLDRTVLLWDQRAEKCQGLL-RVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYE----------KGPF------- 197 (332)
Q Consensus 138 s~s~Dg~i~iWd~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~----------~~~~------- 197 (332)
||+.||.|.-||..++.+.... +.+ ..........+.+++++.|.++++.++.... ..|.
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 9999999999999887765443 222 2233444566889999999999999763211 0010
Q ss_pred ---e---------EEEecC------CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021 198 ---D---------IFSVGG------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 259 (332)
Q Consensus 198 ---~---------~~~~~~------~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (332)
. ++.... ..-...+++++|+++.+++|+.|+.+++|.+..+++..+... ..|...++.++|
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-~~h~a~iT~vay 495 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-LEHRAAITDVAY 495 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-ecccCCceEEEE
Confidence 0 111000 012456789999999999999999999999987665443222 246788999999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCceEE-EecCCCCCCceEEeCCCeeEEEeccceEEEecccccc
Q 020021 260 SPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSK 324 (332)
Q Consensus 260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~ 324 (332)
|||+.|||+|...+.+.+||+.+++... .+.-|.+.|.+|+|+|+..+++||+-|-.+..|+..+
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 9999999999999999999999877633 3556999999999999999999999994444444333
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-38 Score=268.57 Aligned_cols=252 Identities=25% Similarity=0.392 Sum_probs=207.4
Q ss_pred eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEE
Q 020021 67 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVL 146 (332)
Q Consensus 67 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~ 146 (332)
.|-..+.+|..+|.++.|+|++..+++++. |.++|+||+.+..+++++++|.+-|.+++|+|||+.+|||+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 456678899999999999999999998863 89999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEE-EEEecCce--eEEEc-----C-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021 147 LWDQRAEKCQG-LLRVQGRP--AAAYD-----D-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217 (332)
Q Consensus 147 iWd~~~~~~~~-~~~~~~~~--~~~~~-----~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 217 (332)
+||.+++++.. .+..+.+. ..++. + ...+.+++.||.++|||+.. ....+.+.+|+..|+++.+--+
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~----~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL----GTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC----ceEEEEeccCccceEEEEEcCC
Confidence 99999887754 33333332 23332 2 33455566799999999863 3346677899999999988655
Q ss_pred CCEEEEEcCCCeEEEEEccCCeEeEEeeec--------------------------------------------------
Q 020021 218 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-------------------------------------------------- 247 (332)
Q Consensus 218 g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------------------------------- 247 (332)
| ++.+++.|++|++|+...|.+.+++..+
T Consensus 259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 4 6788888999999987765443332110
Q ss_pred --------------------------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe
Q 020021 248 --------------------------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 301 (332)
Q Consensus 248 --------------------------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~ 301 (332)
..|..-++.+.||||++|+||||-|++|++||-.+|+.+.++.+|-++|..++|
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 123445667999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeccce--EEEecccccccc
Q 020021 302 TPGSLMFVTGSSE--LSFWIPDLSKLG 326 (332)
Q Consensus 302 sp~~~~l~t~~~d--~~~w~~~~~~~~ 326 (332)
+.|.++|+++|.| +++|+...++|.
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeec
Confidence 9999999999998 888998887775
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=283.36 Aligned_cols=293 Identities=24% Similarity=0.400 Sum_probs=243.7
Q ss_pred ccceeEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 24 MEVGMSFRDY-NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 24 ~~~~~~l~~h-~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
..+...+.+| ...|.++.|+++|+++++++.|+++++|+..+.+ .++++.+|...|..++|++++..++.++. |
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D 224 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---D 224 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---C
Confidence 3345566665 7889999999999999999999999999998777 77888899999999999999998888765 8
Q ss_pred ceeEEEEc-cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEE
Q 020021 101 ESLRLLSL-HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFA 177 (332)
Q Consensus 101 ~~v~v~d~-~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 177 (332)
.++|+||+ ..+..++++++|...|++++|+|+++.++||+.|++|++||++++++...+..+. .....+.+++.++.
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 99999999 5568899999999999999999999999999999999999999999998887654 44567777776555
Q ss_pred EE-eCCEEEEEECccCCCCCeeEEEecCCCC--CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021 178 VA-FGGYIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (332)
Q Consensus 178 ~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 254 (332)
++ .|+.|++||+...... ....+.++.. .+..+.|+|+|.+++++..|+.+++||+..+.....+..+.....++
T Consensus 305 s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI 382 (456)
T ss_pred EcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence 54 5899999999876421 1112222222 58999999999999999999999999999998888777543322244
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-CCCCceEEeCCCeeEEEecc--ceEEEeccc
Q 020021 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPGSLMFVTGS--SELSFWIPD 321 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~t~~--~d~~~w~~~ 321 (332)
....+++++.++++|+.|+.|++||+.++..+..+..| ...+..++|+|...++++++ .|..++.|.
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 45667899999999999999999999998888888999 88889999999999999988 564444443
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=263.52 Aligned_cols=287 Identities=17% Similarity=0.271 Sum_probs=242.1
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 102 (332)
...+...+.||..+|+.+-|+|+-.++++++.|.+|++||..++++...+++|...+..++|+..|+.++.+++ |-.
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs---Dl~ 173 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS---DLS 173 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---ccc
Confidence 34556668899999999999999999999999999999999999999999999999999999999999998875 677
Q ss_pred eEEEEccC-CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee--EEEcCCCeEEEEE
Q 020021 103 LRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDDQGLVFAVA 179 (332)
Q Consensus 103 v~v~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 179 (332)
+++||.+. .++++.+.||...|.++.|-|.|++++|+++|.+|+.||+.++-|+.++..+..-. .....++.+++++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99999877 66788999999999999999999999999999999999999999998887665433 3344566666655
Q ss_pred -eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC---------------CCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021 180 -FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---------------DGRLMLLTTMEGHIHVLDSFRGTLLST 243 (332)
Q Consensus 180 -~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~---------------dg~~l~~~~~dg~i~i~d~~~~~~~~~ 243 (332)
.|.++++|-+.+.+-.. .+.+|.-++.++++.| .+.++++++-|++|++||+.+|.++.+
T Consensus 254 s~dqtl~vW~~~t~~~k~----~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKA----ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred CCCceEEEEEeccchhhh----hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 57899999876542100 0011111233333322 236899999999999999999999988
Q ss_pred eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
+. +|.+.|..++|+|-|+||+|+.+|++++|||+.++++.+++..|+..++++.|+.+.-+++||+-| +++|.
T Consensus 330 L~---ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 330 LV---GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred Ee---cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 87 578999999999999999999999999999999999999999999999999999999999999987 77775
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6e-37 Score=258.89 Aligned_cols=284 Identities=17% Similarity=0.289 Sum_probs=240.2
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
-++.+.+.||.+.|.||++.|-+.+++||+.|++++|||+.+|....++.+|-..|..+++++...+++++. .|.+|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g---edk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG---EDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec---CCCee
Confidence 567788999999999999999999999999999999999999999999999999999999999999999874 48899
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEc-CCCeEEEEEe
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD-DQGLVFAVAF 180 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~ 180 (332)
+.||++.++.++.+.||...|.+++.+|.-+.|+||++|.++|+||+++...+.++..+..+ .+.+. -++.+++++.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99999999999999999999999999999999999999999999999999888777655433 22333 3789999999
Q ss_pred CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s 260 (332)
|++|++||++..+. ...+..|...+.+++.+|....+++++.| .|+-|++..|..+..+. .|+..+..++..
T Consensus 298 D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nls---gh~~iintl~~n 369 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLS---GHNAIINTLSVN 369 (460)
T ss_pred CceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccc---cccceeeeeeec
Confidence 99999999987653 22333456688999999999999988877 68999999998887755 566677778887
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceEEEe--------cCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 261 PEGMFVISGSGDGSVYAWSVRSGKEVASW--------MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~--------~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
.|| ++++|++.|.|..||.+++-..... ..-.+.|.+-+|...+..|+|+..| +++|.
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 776 6678999999999999887543222 1224567889999999999999887 66663
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-37 Score=285.50 Aligned_cols=249 Identities=21% Similarity=0.358 Sum_probs=217.7
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-------------------------------eeE
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-------------------------------CLK 70 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-------------------------------~~~ 70 (332)
.+...+ ++..-...++|..|++|+.+||-|-.|..|++|.+...+ ..+
T Consensus 367 pSic~Y-T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMY-TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEE-EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 334433 333344568899999999999999999999999886311 123
Q ss_pred EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021 71 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 150 (332)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~ 150 (332)
++.+|..+|..+.|+|+.++++++|. |.++|+|.+.+..++-.++||..+|+.+.|+|-|-+|||+|.|++.++|..
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred EeecCCCceeeeeecccccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 57789999999999999999998875 889999999999999999999999999999999999999999999999986
Q ss_pred CCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeE
Q 020021 151 RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI 230 (332)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i 230 (332)
...++... ..+|.+++.++.|+|+..|+++|+.|.++
T Consensus 523 d~~~PlRi-------------------------------------------faghlsDV~cv~FHPNs~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 523 DHNKPLRI-------------------------------------------FAGHLSDVDCVSFHPNSNYVATGSSDRTV 559 (707)
T ss_pred ccCCchhh-------------------------------------------hcccccccceEEECCcccccccCCCCceE
Confidence 54332211 13567889999999999999999999999
Q ss_pred EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEe
Q 020021 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT 310 (332)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t 310 (332)
++||..+|..++.|. +|..++.+++|||+|+|||+|++||.|.+||+.+++.+..+..|.+.|.+|+||.||..||+
T Consensus 560 RlWDv~~G~~VRiF~---GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 560 RLWDVSTGNSVRIFT---GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred EEEEcCCCcEEEEec---CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence 999999999998886 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccce--EEEecc
Q 020021 311 GSSE--LSFWIP 320 (332)
Q Consensus 311 ~~~d--~~~w~~ 320 (332)
|+.| +++|+.
T Consensus 637 gg~DnsV~lWD~ 648 (707)
T KOG0263|consen 637 GGADNSVRLWDL 648 (707)
T ss_pred cCCCCeEEEEEc
Confidence 9988 888864
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.1e-35 Score=255.12 Aligned_cols=283 Identities=26% Similarity=0.470 Sum_probs=239.7
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~ 106 (332)
+++|++|.++|++++|+|++++|++++.|+.+++||..+++....+..|...+..+.|.+++..+++++. |+.+++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEE
Confidence 4678899999999999999999999999999999999988888888888888888999999988887754 7899999
Q ss_pred EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEEe-CCE
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF-GGY 183 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 183 (332)
|+.+++.+..+..|...|.++.|+++++.+++++.|+.+++||+++++....+..+. .....+.+.+.+++++. ++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 999988888899999999999999998899999999999999998777766665332 34556667677777776 899
Q ss_pred EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (332)
Q Consensus 184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg 263 (332)
|++||++..+. ... ...+...+..+.++|+++.+++++.++.|++||...++.+..+. .+...+..++|+|++
T Consensus 159 i~i~d~~~~~~--~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~ 231 (289)
T cd00200 159 IKLWDLRTGKC--VAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDG 231 (289)
T ss_pred EEEEEcccccc--cee--EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCC
Confidence 99999975331 222 22444578999999999999999999999999999887776654 344578889999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 264 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
.++++++.||.|++||+.+++.+..+..|...+.+++|+|++..+++++.| +++|+
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999889999999999888888888898899999999999999999887 66663
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.4e-37 Score=282.70 Aligned_cols=212 Identities=28% Similarity=0.423 Sum_probs=193.7
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
.+-...++|-||+++|.+.+|+|+.++|+++|.|+++|+|.+.+..|+..+++|..+|..+.|+|.|-++++++ .|.
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas---~D~ 515 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS---HDQ 515 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC---CCc
Confidence 34555677999999999999999999999999999999999999999999999999999999999998888774 499
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (332)
+.++|......+++.+.||.+.|.++.|+|+..+++|||.|.++|+||..++..+
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V------------------------- 570 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV------------------------- 570 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-------------------------
Confidence 9999999999999999999999999999999999999999999999999877543
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp 261 (332)
|+| .||..+|.+++|||+|+++++|+.||.|.+||+.++.++..+. .|.+.+.++.||.
T Consensus 571 ---RiF---------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 571 ---RIF---------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSR 629 (707)
T ss_pred ---EEe---------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh---cccCceeEEEEec
Confidence 332 2567789999999999999999999999999999999887776 4578899999999
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 020021 262 EGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~ 282 (332)
||..||+||.|.+|++||+.+
T Consensus 630 dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 630 DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999965
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-36 Score=244.80 Aligned_cols=261 Identities=16% Similarity=0.250 Sum_probs=210.2
Q ss_pred ceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEE
Q 020021 12 VSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV 91 (332)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 91 (332)
+.-+|..+=-.-....+.|+||+-.|+.+..++||++.+++|+|+++|+||+.+++..+.|.+|...|.+++|+++..++
T Consensus 41 i~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi 120 (315)
T KOG0279|consen 41 IVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI 120 (315)
T ss_pred EEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee
Confidence 44456555333456688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCceeEEEEccCCceEEEeec--ccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEec--Cce
Q 020021 92 IYSSKNGWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRP 165 (332)
Q Consensus 92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~~--h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~ 165 (332)
++++. |.++++||..... ..++.. |.+-|.++.|+|. ...++++|+|+++|+||+++-+....+..+ ..+
T Consensus 121 vSGSr---DkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 121 VSGSR---DKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred ecCCC---cceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 99875 9999999987643 344443 3788999999997 569999999999999999887766655433 345
Q ss_pred eEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021 166 AAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244 (332)
Q Consensus 166 ~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (332)
.+.++++|.+.+.+ .||.+.+||++..+. .+.+ ++...|++++|+|....|+.+... .|+|||+.++..+.++
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~----lysl-~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKN----LYSL-EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEEL 270 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCce----eEec-cCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhc
Confidence 67788888766655 589999999986543 3333 344679999999987666655544 5999999999888777
Q ss_pred eecCCC------CCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 245 NVKPVS------RNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 245 ~~~~~~------~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
+..... ...+..++||+||+.|++|-.|+.|++|.+..
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 643222 23446789999999999999999999998753
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=268.36 Aligned_cols=295 Identities=20% Similarity=0.388 Sum_probs=248.2
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~ 109 (332)
|..-...|++.+|++..++||+|-..|...+|++...++++.+.-.+.+|..++|+..|..++.++.. =+++.||++.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWq 338 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQ 338 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEee
Confidence 34444789999999999999999999999999999999999999888899999999999999998752 4689999999
Q ss_pred CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCC-eEEEEEeCCEEEE
Q 020021 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG-LVFAVAFGGYIRM 186 (332)
Q Consensus 110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~v 186 (332)
+..++...+||-..+++++++|||.++|||+.||.||+||..++-|..++..+ ++....+...+ .+++++.||+||.
T Consensus 339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 99999999999999999999999999999999999999999999999998665 34555666555 5666778999999
Q ss_pred EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC-eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (332)
Q Consensus 187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~ 265 (332)
||+..+.+ +..+.. +.+....+++..|.|.++.+|+.|. .|.+|++.+|+++..+. +|.++|.+++|+|+|..
T Consensus 419 wDlkRYrN--fRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 419 WDLKRYRN--FRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS---GHEGPVSGLSFSPDGSL 492 (893)
T ss_pred eeecccce--eeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc---CCCCcceeeEEccccCe
Confidence 99986643 223321 2223567788889999999998875 79999999999998887 68899999999999999
Q ss_pred EEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc-cccccccccccC
Q 020021 266 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRK 332 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~-~~~~~~~~~~~~ 332 (332)
|||||.|.+||+||+-..........+...+..++|+|||+.++.+.-| +++|++ +...++-++|||
T Consensus 493 LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred EEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 9999999999999996543333333456678999999999988776654 999998 556677888886
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-36 Score=258.61 Aligned_cols=288 Identities=23% Similarity=0.381 Sum_probs=230.7
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
+..+.|..|+.+|.-+.||++|+||||++.|.|..||++... +..+++.+|..+|.-+.|+|+.++++++. .|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg---~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG---FDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC---chH
Confidence 345668999999999999999999999999999999998643 34788999999999999999999999874 477
Q ss_pred eeEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEE--EEecCceeEEEcCCC-eEEE
Q 020021 102 SLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL--LRVQGRPAAAYDDQG-LVFA 177 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~ 177 (332)
.+++||+.+|..+..+. +|...+.+++|+|||..+++|+.|++|..||+..+..... .+.+.....+..+++ .+++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence 89999999998776664 4567899999999999999999999999999865432111 111222334444544 5677
Q ss_pred EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
+..|..|++++....... ...+ ...++.+.++|.||+++++.-.+..+++||+....++..+.++.. ...++..
T Consensus 372 v~~d~~i~l~~~e~~~dr--~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-~~fiIrS 445 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDR--GLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-GHFIIRS 445 (519)
T ss_pred Eecccceeeechhhhhhh--cccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-cceEEEe
Confidence 778999999987643211 1111 224789999999999999999999999999987777766654432 3455666
Q ss_pred EECC-CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCe-eEEEeccce--EEEeccc
Q 020021 258 SFSP-EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSE--LSFWIPD 321 (332)
Q Consensus 258 ~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~t~~~d--~~~w~~~ 321 (332)
+|.- +..++||||+|+.||||+..+++.+..+.+|...|+||+|+|.. .|+++|+.| +++|-++
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 7764 55899999999999999999999999999999999999999954 799999998 6666653
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=232.71 Aligned_cols=285 Identities=15% Similarity=0.360 Sum_probs=226.9
Q ss_pred cccceeEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCC---CeeeEEee-ecccceeEEEEccCCCEEEEecCC
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTA---ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKN 97 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~ 97 (332)
++...+.+.+|.+.|..++|+|- |.+|||+|.|+.||||++.. -.|...+. +|...|..++|+|+++.+++++.
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF- 81 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF- 81 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec-
Confidence 46678889999999999999998 88999999999999999984 56666663 67788999999999998888764
Q ss_pred CCCceeEEEEccCC--ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce---EEEEEEec--CceeEEEc
Q 020021 98 GWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLLRVQ--GRPAAAYD 170 (332)
Q Consensus 98 g~d~~v~v~d~~~~--~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~~--~~~~~~~~ 170 (332)
|.++-+|.-..+ +++.++.||.++|.+++|+++|++|||+|+|+.|-||....+. |...++.+ .+-.+.++
T Consensus 82 --D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 82 --DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred --cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 889999976654 4688999999999999999999999999999999999976432 44455433 23456777
Q ss_pred CC-CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021 171 DQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 171 ~~-~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
|. ..++++++|++|++|.-.. ...-.....+.++...+-+++|++.|..+++++.|++++||-..+. ....
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~ 231 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGM 231 (312)
T ss_pred CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchh
Confidence 74 5777888999999997653 1222234566778778999999999999999999999999985531 1224
Q ss_pred CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc--e----E-EEecCCCCCCceEEeCCC-eeEEEeccce--EEEec
Q 020021 250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK--E----V-ASWMSFDTEPPVIKWTPG-SLMFVTGSSE--LSFWI 319 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~--~----~-~~~~~~~~~v~~l~~sp~-~~~l~t~~~d--~~~w~ 319 (332)
|...+..++|. +..|||++.|+.|+++.-...- . + +.-..|...|+++.|.|. ..+|++++.| +++|.
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 56677788887 6799999999999999776421 1 1 112468889999999995 6788998887 77775
Q ss_pred c
Q 020021 320 P 320 (332)
Q Consensus 320 ~ 320 (332)
.
T Consensus 310 l 310 (312)
T KOG0645|consen 310 L 310 (312)
T ss_pred e
Confidence 4
No 22
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=259.08 Aligned_cols=283 Identities=24% Similarity=0.418 Sum_probs=230.4
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
...+..|.+.+..+.|-++...|+||+.|..|++|++...+ .+.++.+...++..+.|.+++..+++++. |++++
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r 244 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLR 244 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCcee
Confidence 34478899999999999998999999999999999998665 56778888888999999999988887654 88999
Q ss_pred EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEeCCE
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAFGGY 183 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (332)
+|++.+.....+|.||++.|+++.|......+++|+.|.+|+.||+....|..++-.... ...+. ....++++-+|++
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~-~~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC-SISDVISGHFDKK 323 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe-cceeeeecccccc
Confidence 999999999999999999999999998777799999999999999998888765432211 11111 1344566668999
Q ss_pred EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC-CcceEEEECCC
Q 020021 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPE 262 (332)
Q Consensus 184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~v~~spd 262 (332)
||+||.|.... ......+ ..+.++..+++|..+++++-|.++.++|+++.+..+.+....... .-.+.+.|||+
T Consensus 324 vRfwD~Rs~~~--~~sv~~g---g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 324 VRFWDIRSADK--TRSVPLG---GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred eEEEeccCCce--eeEeecC---cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999986432 1112222 368999999999999999999999999999988888876533222 22457899999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEecCC--CCCCceEEeCCCeeEEEeccce--EEEe
Q 020021 263 GMFVISGSGDGSVYAWSVRSGKEVASWMSF--DTEPPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
+.|+|+||.||.|+||++.++++...+... ++.|++++|+|.|..+++++.+ +.+|
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999999999999999886655433 3369999999999999999887 6666
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-34 Score=235.38 Aligned_cols=241 Identities=21% Similarity=0.360 Sum_probs=209.7
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC------eeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
++-....|-+.+|+|.|+++|.||.|...-||++.+. +..+.+.+|...+.++.|.++ ..+++++. |.++
T Consensus 93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SG---D~TC 168 (343)
T KOG0286|consen 93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSG---DMTC 168 (343)
T ss_pred EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCC---CceE
Confidence 5556788999999999999999999999999999865 344668889888888888874 46676653 8999
Q ss_pred EEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCCeEEEEE-
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGLVFAVA- 179 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 179 (332)
-+||+++++.+..|.||.+.|.+++++| +++.|+||+.|++.++||++.+.|...|..+ ..+.+.|.|++.-|+.+
T Consensus 169 alWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 169 ALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC
Confidence 9999999999999999999999999999 9999999999999999999999999988665 35677888888766655
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 259 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (332)
.|+++|+||+|..+ .+.+++......++++++||..|+++.+|..|.++.+||.-+++....+. +|.+.|.++..
T Consensus 249 DD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~---GHeNRvScl~~ 323 (343)
T KOG0286|consen 249 DDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA---GHENRVSCLGV 323 (343)
T ss_pred CCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee---ccCCeeEEEEE
Confidence 57999999999743 45566655555689999999999999999999999999999998887776 68899999999
Q ss_pred CCCCCEEEEEcCCCcEEEEE
Q 020021 260 SPEGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 260 spdg~~l~sgs~Dg~i~vWd 279 (332)
+|||.-++|||.|.++|||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
No 24
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-35 Score=272.82 Aligned_cols=268 Identities=19% Similarity=0.311 Sum_probs=219.4
Q ss_pred ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
+.-.|.+|.|+|.+|.|+|++++++|||+|.+|++|+..+.+|+.++.+|..-|..+.|++.-..|+++|. |.+||+
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD---DQTIrI 119 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD---DQTIRI 119 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC---CCeEEE
Confidence 34458899999999999999999999999999999999999999999999999999999999999999875 899999
Q ss_pred EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC--CCeEEEEEeCCE
Q 020021 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD--QGLVFAVAFGGY 183 (332)
Q Consensus 106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 183 (332)
|++.+++++.++.||...|+|..|+|..+.++|+|-|.|||+||+..-+.... .+. .+.. .+.....
T Consensus 120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~-----~pg-~~e~~~~~~~~~~----- 188 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK-----APG-SLEDQMRGQQGNS----- 188 (1202)
T ss_pred EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC-----CCC-Cchhhhhccccch-----
Confidence 99999999999999999999999999999999999999999999854321111 011 0000 0000000
Q ss_pred EEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (332)
Q Consensus 184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg 263 (332)
.++ ........+-+.||.-.|+.++|.|.-.++++|++|+.|++|.+...+.- +...-.+|.+.+.++.|+|..
T Consensus 189 -dLf----g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 189 -DLF----GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred -hhc----CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCcc
Confidence 000 00011123456788889999999999999999999999999997643322 112223677899999999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 264 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
..++|.|+|++|||||+...+.+.++...+.+.+.++-+|..+++++|-.
T Consensus 263 ~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 263 DLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred ceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC
Confidence 99999999999999999999999999888889999999999999998854
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.8e-36 Score=260.15 Aligned_cols=287 Identities=17% Similarity=0.313 Sum_probs=227.7
Q ss_pred cceeEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021 25 EVGMSFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 102 (332)
+...+|.||+..|+++.|.| .+.+|+++|.|+.|+||++-. +.|++++.+|..+|..++|+..+..+++++ +|..
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s---fD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS---FDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee---ccee
Confidence 45678999999999999999 789999999999999999975 999999999999999999999999999875 5999
Q ss_pred eEEEEccCCceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEE--ecCceeEEEcCCC-eEEEE
Q 020021 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQG-LVFAV 178 (332)
Q Consensus 103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~ 178 (332)
+++||.++|+++..+. -...++++.|+|++ +.|+.|+.|+.|+.||+++++.+..+. +.......|-+.+ .+++.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999887764 22456789999988 899999999999999999988654432 1223334454544 56666
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe---EEeeecCCCCCcce
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---STYNVKPVSRNSTL 255 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~ 255 (332)
+.++.+++|+.+..-.-.+.. . ...-...+++.+|.+..+++-+.|+.|.++...-.-.+ ..++.+. ..+..+
T Consensus 361 SDdks~riWe~~~~v~ik~i~-~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-vaGys~ 436 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIA-D--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-VAGYSC 436 (503)
T ss_pred ccCccEEEEEcCCCccchhhc-c--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-ccCcee
Confidence 678999999977532211111 0 11113467899999999999999999999986432222 2333332 235556
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCe-eEEEeccce--EEEec
Q 020021 256 EASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGS-LMFVTGSSE--LSFWI 319 (332)
Q Consensus 256 ~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~t~~~d--~~~w~ 319 (332)
.+.|||||++|++|+.||.+++||..+.+.+..+..|++.+..+.|+|.. ..++|++-+ +++|+
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999999999999999999999999999999999999999999975 567777655 77774
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.8e-33 Score=278.74 Aligned_cols=279 Identities=15% Similarity=0.269 Sum_probs=216.1
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----e----eeEEeeecccceeEEEEccC-CCEEEEecCCCCC
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWD 100 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d 100 (332)
+.+|.+.|.+++|+|+|++||||+.|++|+|||+.+. . ....+. +...+..++|++. +..+++++ .|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~---~D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN---FE 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEe---CC
Confidence 4459999999999999999999999999999997542 1 112222 2346788899875 45566554 48
Q ss_pred ceeEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEE-cCCCe-EE
Q 020021 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAY-DDQGL-VF 176 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~ 176 (332)
++|++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||++++.+...+..... ....+ .+++. ++
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA 634 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEE
Confidence 9999999999999999999999999999997 788999999999999999998887766654322 23344 34454 55
Q ss_pred EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC------eEeEEeeecCCC
Q 020021 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVS 250 (332)
Q Consensus 177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~ 250 (332)
+++.|+.|++||++..... .....+|...+..+.|+ ++.++++++.|++|++||+..+ ..+..+. .|
T Consensus 635 tgs~dg~I~iwD~~~~~~~---~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh 707 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLP---LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GH 707 (793)
T ss_pred EEeCCCeEEEEECCCCCcc---ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CC
Confidence 5556899999999864321 22334677788999997 7889999999999999998743 3444444 45
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-------------cCCCCCCceEEeCCCeeEEEeccce--E
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-------------MSFDTEPPVIKWTPGSLMFVTGSSE--L 315 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-------------~~~~~~v~~l~~sp~~~~l~t~~~d--~ 315 (332)
...+..++|+|++++|++|+.|+.|++|+......+..+ ..+...|.+++|+|++.+|++|+.+ +
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 667778999999999999999999999998765443221 2344568999999999999999887 6
Q ss_pred EEec
Q 020021 316 SFWI 319 (332)
Q Consensus 316 ~~w~ 319 (332)
++|+
T Consensus 788 ~i~~ 791 (793)
T PLN00181 788 KILE 791 (793)
T ss_pred EEEe
Confidence 6665
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=228.54 Aligned_cols=274 Identities=15% Similarity=0.256 Sum_probs=220.3
Q ss_pred HhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCC
Q 020021 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNG 98 (332)
Q Consensus 21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g 98 (332)
..+....+++.-..+.|+.+.+.||++.||+|++-. ||+||+++++ .+.++.+|...|..+.|..+++.+++++.
T Consensus 27 a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse-- 103 (311)
T KOG0315|consen 27 ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE-- 103 (311)
T ss_pred hhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC--
Confidence 356677888888888899999999999999888755 8999998765 47889999999999999999999998864
Q ss_pred CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-C--ceeEEEcCCCeE
Q 020021 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-G--RPAAAYDDQGLV 175 (332)
Q Consensus 99 ~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 175 (332)
|+++|+||+....+.+.++ |.++|+++..+|+...|+++.++|.|++||+....|...+... . .......+++..
T Consensus 104 -Dgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 104 -DGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred -CceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 8999999998876666665 7799999999999999999999999999999988765544221 1 223455677777
Q ss_pred EEEEe-CCEEEEEECccCCC-CCe-eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021 176 FAVAF-GGYIRMFDARKYEK-GPF-DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (332)
Q Consensus 176 ~~~~~-~~~i~vwd~~~~~~-~~~-~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (332)
++++. .|.+.+|++-.... .++ .+....-|...+..|.+|||+++|++++.|.+++||+...- ..-+.... .|..
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~-gh~r 259 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLT-GHQR 259 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEee-cCCc
Confidence 76665 59999999764221 111 11223345567888999999999999999999999998765 22222222 4668
Q ss_pred cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe
Q 020021 253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW 301 (332)
Q Consensus 253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~ 301 (332)
.++.++||.||+||+|||.|+.+++|++++++.+....+|-.+..|++.
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999999999999999999999999998888877777764
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=262.52 Aligned_cols=298 Identities=16% Similarity=0.270 Sum_probs=236.3
Q ss_pred HhcccceeEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021 21 LQSMEVGMSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (332)
Q Consensus 21 ~~~~~~~~~l~~-h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~ 99 (332)
|...++.+.+++ |++||-.++|+|.+.+|+|||.|+++++||+..+.|++.+.+|+..|..+.|+|+...-+..+ ++-
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s-g~~ 169 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS-GAT 169 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee-cCC
Confidence 344577888888 999999999999999999999999999999999999999999999999999999988633322 234
Q ss_pred CceeEEEEccCCc-eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE-------------------
Q 020021 100 DESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL------------------- 159 (332)
Q Consensus 100 d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~------------------- 159 (332)
|+++++||+.+.. ++.+++.|.+.|++++|.+|+..++++|+|+.+.+||+.+.++..++
T Consensus 170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~ 249 (775)
T KOG0319|consen 170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK 249 (775)
T ss_pred CceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence 8999999998644 47888999999999999999999999999999999997432110000
Q ss_pred -------------Ee--------------c-----------------------------------------Cce------
Q 020021 160 -------------RV--------------Q-----------------------------------------GRP------ 165 (332)
Q Consensus 160 -------------~~--------------~-----------------------------------------~~~------ 165 (332)
+. + +..
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 00 0 000
Q ss_pred ----------------------------e----------EEEc--CCC-eEEEEEeCCEEEEEECccCC-----------
Q 020021 166 ----------------------------A----------AAYD--DQG-LVFAVAFGGYIRMFDARKYE----------- 193 (332)
Q Consensus 166 ----------------------------~----------~~~~--~~~-~~~~~~~~~~i~vwd~~~~~----------- 193 (332)
+ ...+ .++ .+++++.|..+++|-+.+..
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 0 0000 122 33444456677777441100
Q ss_pred -----------------------CCCeeEEE------------------ecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021 194 -----------------------KGPFDIFS------------------VGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (332)
Q Consensus 194 -----------------------~~~~~~~~------------------~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i 232 (332)
...+..+. ...|..+|++++++|+.+++++|+.|++.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 00011111 1224568999999999999999999999999
Q ss_pred EEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021 233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 233 ~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
|++..+.++.++. +|...+++|.|+|..+.+||+|.|++|+||.+.+..+++++.+|.+.|...+|-.++.+|++++
T Consensus 490 W~le~~~l~~vLs---GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 490 WDLEQLRLLGVLS---GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ecccCceEEEEee---CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 9999888888887 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--EEEecccc
Q 020021 313 SE--LSFWIPDL 322 (332)
Q Consensus 313 ~d--~~~w~~~~ 322 (332)
.| +++|+...
T Consensus 567 adGliKlWnikt 578 (775)
T KOG0319|consen 567 ADGLIKLWNIKT 578 (775)
T ss_pred CCCcEEEEeccc
Confidence 88 99998754
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-33 Score=245.29 Aligned_cols=285 Identities=17% Similarity=0.320 Sum_probs=233.9
Q ss_pred eEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCC--Ceee------EEe--ee----cccceeEEEEccCCCEEE
Q 020021 28 MSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTA--ATCL------KTI--NS----KKYGVDLVCFTSHPTTVI 92 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~--~~~~------~~~--~~----~~~~v~~~~~~~~~~~~~ 92 (332)
+.++ |+.+|.+.+|+|-.. ++++|+.|-+.|+|++.. ..+. +.+ .+ .+..|+.++|+.+|..++
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3455 999999999999876 899999999999999863 2111 111 11 123589999999999999
Q ss_pred EecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEc
Q 020021 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD 170 (332)
Q Consensus 93 ~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~ 170 (332)
+++. |+.+|+|+.. |..+.+|..|+++|.++.|+..|++++|++.|+++.+||..++.+...+..+..+ .+.+.
T Consensus 252 tG~~---~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 252 TGSE---DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred Eeec---CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 9875 7889999974 4667889999999999999999999999999999999999888877666555443 24455
Q ss_pred CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021 171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250 (332)
Q Consensus 171 ~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (332)
....+.+++.|+.|+++.+... .| .....+|..+|+++.|.|.|.+|++++.|++++||.+......+.+. .|
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~--~P--~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~H 400 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGED--RP--VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AH 400 (524)
T ss_pred cCceEeecCCCceEEEEEecCC--Cc--ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---hh
Confidence 6667777888999999987642 23 23445688999999999999999999999999999987766665554 46
Q ss_pred CCcceEEEECCCC---------CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 251 RNSTLEASFSPEG---------MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 251 ~~~~~~v~~spdg---------~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
...+..+.|||+| ..+++++.|++|++||+..+.++++++.|..+|.+|+|+|+|+++++|+-| +.+|.
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 6778888888855 589999999999999999999999999999999999999999999999988 66676
Q ss_pred ccccc
Q 020021 320 PDLSK 324 (332)
Q Consensus 320 ~~~~~ 324 (332)
....+
T Consensus 481 ~~~~~ 485 (524)
T KOG0273|consen 481 TKTGK 485 (524)
T ss_pred ccchh
Confidence 54433
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-33 Score=246.21 Aligned_cols=240 Identities=20% Similarity=0.312 Sum_probs=202.6
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
..+..+|..|.++|++|.|+.+|+||++++.|+++.+||..++++.+.+..|..+...+.|..+. .+++++. |+.|
T Consensus 266 G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~t---d~~i 341 (524)
T KOG0273|consen 266 GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSST---DGCI 341 (524)
T ss_pred chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCC---CceE
Confidence 45667899999999999999999999999999999999999999999999888765556776554 3444443 7899
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCE
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY 183 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (332)
+|+-+....++.++.||+++|.++.|+|.+..|+|+|.|+|++||++....+...++.+.
T Consensus 342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-------------------- 401 (524)
T KOG0273|consen 342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-------------------- 401 (524)
T ss_pred EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc--------------------
Confidence 999999999999999999999999999999999999999999999987665544443221
Q ss_pred EEEEECccCCCCCeeEEEecCCCCCceeEEEcC---------CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSN---------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (332)
Q Consensus 184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~---------dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 254 (332)
..+..+.+|| ++..+++++.|++|++||+..|.+++.+. -|..+|
T Consensus 402 -----------------------kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pV 455 (524)
T KOG0273|consen 402 -----------------------KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPV 455 (524)
T ss_pred -----------------------cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCce
Confidence 1222233333 45679999999999999999999999886 467899
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
.+++|||+|+|+|+|+.||.|.||++++++.+++...- +.|..|+|+.+|..++..-+|
T Consensus 456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred EEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecC
Confidence 99999999999999999999999999999998887664 458999999999888776655
No 31
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=232.56 Aligned_cols=275 Identities=16% Similarity=0.220 Sum_probs=214.9
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCC-Ceee-EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 32 DYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 32 ~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
..++.|++|+||| ...+++.+|+|++||+|+++. |... +....|..+|..++|+.++..+++++ .|+++++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~---~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG---CDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec---cCCceEEEEc
Confidence 4568899999999 456677999999999999986 3322 34456778899999999999888875 4899999999
Q ss_pred cCCceEEEeecccccEEEEEecCCCC--eEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEE
Q 020021 109 HDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM 186 (332)
Q Consensus 109 ~~~~~~~~~~~h~~~V~~v~~~~~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 186 (332)
.+++ ...+..|.++|..+.|-+... .|+|||+|++||+||++...+...+.++.+..+.--.....+.+..+..|.+
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEE
Confidence 9985 556778999999999987655 8999999999999999999998888887764433223344444556789999
Q ss_pred EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE--eeecCC---C---CCcceEEE
Q 020021 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST--YNVKPV---S---RNSTLEAS 258 (332)
Q Consensus 187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~---~---~~~~~~v~ 258 (332)
|++++.......+.+ ...-.+++|+..+|....+.|+.+|++-|..+..+..... |+.+.. . ...|.+++
T Consensus 181 ynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 999764322111110 1123578899989998889999999999988877643333 332211 0 12456799
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
|+|.-..|+|++.||++..||-.....+++...|+.+|+|-+|+.+|.+++-+.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999999999999999999999988888999899999999999999999998764
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=247.05 Aligned_cols=274 Identities=20% Similarity=0.342 Sum_probs=228.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
.+|..|.|.|+|+.|++|+..|.+.+|+..+-.-..-+.+|+.+|..+.++.++..++++.. ++.|++|+.+-. .+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmn-nV 172 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMN-NV 172 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchh-hh
Confidence 57999999999999999999999999998543333335689999999999999999998865 678999997554 35
Q ss_pred EEeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcC-CCeEEEEEeCCEEEEEECc
Q 020021 115 RYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDAR 190 (332)
Q Consensus 115 ~~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~i~vwd~~ 190 (332)
+.++.|+ ..|++++|+|....|+|+|.||+|+|||....+....+..++- .++.++| .+.+++++.|+.|++||.|
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 5566655 8999999999888999999999999999988887777766653 3556666 5567777778999999998
Q ss_pred cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC-CCEEEEE
Q 020021 191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISG 269 (332)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd-g~~l~sg 269 (332)
+.+ .+.++.+|...|..+.|+|++.+|++++.|..++++|+++.+-+..++ .|...+++++|+|- -..|.+|
T Consensus 253 Sg~----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 253 SGS----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred Ccc----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeec
Confidence 753 234556788889999999999999999999999999998666555555 57788999999994 5688889
Q ss_pred cCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 270 SGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 270 s~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
+.||.|..|.+...+.+..+ .+|...|++|+|+|=|-+|++|+.| +++|.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99999999999855555544 6899999999999999999999998 77885
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=230.46 Aligned_cols=287 Identities=13% Similarity=0.191 Sum_probs=231.9
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
....+|..|+++|++++.+|+.++++|||.|-.-.+|+..+++.+..+.+|+..|.++.|+.++..++++ ++++.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG---dmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG---DMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec---CCCccEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999988876 5688999
Q ss_pred EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEE-EEeC
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFA-VAFG 181 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ 181 (332)
||.+.++.....+.+--+.|.-+.|+|.+..|+.|+.||.+-+|.+.++....++..+..+ +..+.|+|+.+. +..|
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 9999999988888877788999999999999999999999999999886555565554433 335556665544 4558
Q ss_pred CEEEEEECccCCCC------------------------------Cee---------EEEec--------CCC---CCcee
Q 020021 182 GYIRMFDARKYEKG------------------------------PFD---------IFSVG--------GDI---SDANV 211 (332)
Q Consensus 182 ~~i~vwd~~~~~~~------------------------------~~~---------~~~~~--------~~~---~~v~~ 211 (332)
++|++||..+...- ... +.... .+. ..+.+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 99999997654210 000 00000 001 12222
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecC
Q 020021 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS 291 (332)
Q Consensus 212 v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~ 291 (332)
+.+|.+-.+.|+|+.||+|.|||+...++.+.. .|...|+.+.|-+ ..+|++++.||.||.||.++|+++.++.+
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheec----cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 334445567899999999999999876654433 4667799999988 78999999999999999999999999999
Q ss_pred CCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
|..+|.+++++|+.++++|+|.| .+++.
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999999999999998 55554
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=244.90 Aligned_cols=283 Identities=14% Similarity=0.254 Sum_probs=234.6
Q ss_pred HhcccceeEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021 21 LQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (332)
Q Consensus 21 ~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D-~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~ 99 (332)
|.++.++..|.=-+-+|.+++|+..|++||-|+.- |.+.+|+-.+..-+-..++|-..+.+++++|+|..+++++.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e--- 370 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE--- 370 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---
Confidence 46678888888777889999999999999987765 79999999876666667788889999999999999999875
Q ss_pred CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc---eeEEEcCCCeEE
Q 020021 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVF 176 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 176 (332)
|+.|++||..++-|+.++..|++.|+++.|+..++.++|+|.||+||.||+...++..++..+.. .+.+.++.+.++
T Consensus 371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 88999999999999999999999999999999999999999999999999999888888877653 356667777665
Q ss_pred EEE-eC-CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCc
Q 020021 177 AVA-FG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNS 253 (332)
Q Consensus 177 ~~~-~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~ 253 (332)
.++ .| -.|.+|++.+.+. .--+.||.++|..++|+|+|..|++++=|++|++||+.... ...++. ...-
T Consensus 451 ~AG~~d~F~IfvWS~qTGql----lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sd 522 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQL----LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSD 522 (893)
T ss_pred EeeccceEEEEEEEeecCee----eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccc
Confidence 555 45 3799999876432 22356898999999999999999999999999999987542 223343 2346
Q ss_pred ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--------------------CCCCCCceEEeCCCeeEEEeccc
Q 020021 254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--------------------SFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------------------~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
+..++|+|||+.||.+..||.|.+||+..+..+.++- .-....+.+++|+||..+.+|+.
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 7789999999999999999999999998766553321 12345688999999999988876
Q ss_pred e
Q 020021 314 E 314 (332)
Q Consensus 314 d 314 (332)
-
T Consensus 603 s 603 (893)
T KOG0291|consen 603 S 603 (893)
T ss_pred c
Confidence 5
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-32 Score=244.16 Aligned_cols=281 Identities=19% Similarity=0.303 Sum_probs=238.9
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
++..+.|..|+..|.+|.|+|..++++++-+.|.|.|||.++....+.+.-...+|..+.|-...+.+++++. |..|
T Consensus 3 l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~I 79 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQI 79 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceE
Confidence 3445667789999999999999999999999999999999999999999888888999999999999999986 8899
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc-eEEEEEEecC--ceeEEEcCC--CeEEEE
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQG--RPAAAYDDQ--GLVFAV 178 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~--~~~~~~~~~--~~~~~~ 178 (332)
|+++.++++.++.|..|.+.|++++.+|...++.|+|.|.+|++||.+.+ .|..++..+. ....++.|+ ..+.++
T Consensus 80 rVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred EEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 99999999999999999999999999999999999999999999998765 3445555443 345566653 356667
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC--CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 256 (332)
+.|++|++|.+... ...+.+.+|...|+++.|-+.| .++++|++|.+|+|||..+..++++++ +|.+.+..
T Consensus 160 sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~ 232 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSF 232 (794)
T ss_pred eccccEEEEEcCCC----CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceE
Confidence 78999999998753 3456677899999999997655 799999999999999999999988887 56778889
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
+.|+|.-..++|||+||++|||+-.+-+...++..--.+++|++-.++++.++.|..+
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 9999999999999999999999998877766666555678888877777666666544
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=232.93 Aligned_cols=246 Identities=23% Similarity=0.380 Sum_probs=211.5
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
++...|+||++.|..|+|+..|.+|+|++.|-++++||.++ .+|++.+.+|...|.+++|.|.+..+++++. |++|
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr---D~ti 217 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR---DNTI 217 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc---ccce
Confidence 34688999999999999999999999999999999999986 7888999999999999999999998887754 9999
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEE----------c-
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAY----------D- 170 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~----------~- 170 (332)
+.|++.++-+++++.+|..-|..++.+.||..++|+|.|.++++|-..+..|...++.+..+ +..+ .
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 99999999999999999999999999999999999999999999999888665555433221 1111 1
Q ss_pred ----CCCeEE-EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021 171 ----DQGLVF-AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (332)
Q Consensus 171 ----~~~~~~-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (332)
+++.++ .++.|++||+||+... ...+.+.+|.+-|..++|+|.|+||+++.+|+++++||+..+++..+++
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 112344 4446999999999753 4567788999999999999999999999999999999999999988776
Q ss_pred ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 246 VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 246 ~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.|...++.++|..+--|++||+-|-++++|.-
T Consensus 374 ---ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 ---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 34567788999999999999999999999963
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-30 Score=227.99 Aligned_cols=294 Identities=17% Similarity=0.262 Sum_probs=240.1
Q ss_pred cccceeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
+..-...+.||+..|+++.|=|..+ +++|||.|.+|-+|+-...+-..++..|..-|.++.|+|++..++++++ |+
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---Dg 212 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---DG 212 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC---Cc
Confidence 4566677999999999999988765 5999999999999998777777788888888999999999999988754 89
Q ss_pred eeEEEEccCCceEEEee---cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc----eeEEEcCCCe
Q 020021 102 SLRLLSLHDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDDQGL 174 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (332)
.+.+||-++++.+..+. +|++.|.++.|+||+.+|+|+|.|+++||||..+++++.++.+... ...+.-.+..
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 99999999999999888 8999999999999999999999999999999999999988876543 1223334888
Q ss_pred EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE-----------
Q 020021 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST----------- 243 (332)
Q Consensus 175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~----------- 243 (332)
+++++.+|+|.+++..... + .....||...+++++.+||+++|.+++.||+|.-||..+|..-..
T Consensus 293 lItVSl~G~in~ln~~d~~--~--~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPS--V--LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG 368 (603)
T ss_pred EEEEEcCcEEEEecccCCC--h--hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence 9999999999999876544 2 234457888999999999999999999999999999866532100
Q ss_pred e-----------------e----------------ecCCC----------------------------------CCcceE
Q 020021 244 Y-----------------N----------------VKPVS----------------------------------RNSTLE 256 (332)
Q Consensus 244 ~-----------------~----------------~~~~~----------------------------------~~~~~~ 256 (332)
+ + ...++ .....+
T Consensus 369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~ 448 (603)
T KOG0318|consen 369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA 448 (603)
T ss_pred EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence 0 0 00000 111235
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceE--EEecCCCCCCceEEeCCCeeEEEeccc--eEEEeccccc
Q 020021 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEV--ASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLS 323 (332)
Q Consensus 257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~t~~~--d~~~w~~~~~ 323 (332)
+|++|++.++|.|+.||.++|+.+..+... ..+..|.+++++++||||+.+|+++.. .+-+|+....
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 889999999999999999999999765543 346789999999999999999999764 4777776543
No 38
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.9e-31 Score=227.07 Aligned_cols=274 Identities=22% Similarity=0.328 Sum_probs=215.1
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE---EEEecCCCCCceeEEEE
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLS 107 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g~d~~v~v~d 107 (332)
-.|.+.|++|... +.+|+||++||++||||.. |++++++.+|..++..+++...... ++++ +.|.++++|-
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa---s~Dqtl~Lw~ 175 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA---SMDQTLRLWK 175 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEe---cCCceEEEEE
Confidence 3588999999887 6899999999999999976 8999999999999987776644433 5655 4599999999
Q ss_pred ccCCce----EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-------------------------EEEE
Q 020021 108 LHDNKY----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-------------------------CQGL 158 (332)
Q Consensus 108 ~~~~~~----~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-------------------------~~~~ 158 (332)
++.+.. ++..+||...|-+++..+++.+++|||+|.+++||+..+.. +..+
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 887653 44456999999999999999999999999999999932110 1111
Q ss_pred EEec--CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021 159 LRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (332)
Q Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~ 236 (332)
+..+ .+..+.+.+.+..++++.|.+|+.||+...... . ... .....+++.++|...++++|+.|.+|++||.+
T Consensus 256 l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~-~---~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLK-S---TLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred ecccccceeeEEEcCCCceEeecccceEEEEEeecccce-e---eee-cCcceeEeecccccceeeecCCCCceeecCCC
Confidence 1111 123567778888889999999999999764321 0 111 11357889999999999999999999999998
Q ss_pred CCeE---eEEeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCCeeEEEec
Q 020021 237 RGTL---LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 237 ~~~~---~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~t~ 311 (332)
++.- ...+. +|.+.+..+.|+|.+ .+|++||.|+++++||+++.+ .+..+..|+..|.++.|+. +..+++|
T Consensus 331 ~~~gs~v~~s~~---gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSG 406 (423)
T KOG0313|consen 331 TGDGSVVSQSLI---GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSG 406 (423)
T ss_pred CCCCceeEEeee---cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEec
Confidence 7632 23333 677899999999955 678899999999999999877 7889999999999999965 4588999
Q ss_pred cceEEEec
Q 020021 312 SSELSFWI 319 (332)
Q Consensus 312 ~~d~~~w~ 319 (332)
+.|.++..
T Consensus 407 GaD~~l~i 414 (423)
T KOG0313|consen 407 GADNKLRI 414 (423)
T ss_pred cCcceEEE
Confidence 98855543
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=222.68 Aligned_cols=258 Identities=20% Similarity=0.376 Sum_probs=221.7
Q ss_pred HHHHhc---ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEe
Q 020021 18 EEILQS---MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 94 (332)
Q Consensus 18 ~~~~~~---~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 94 (332)
.+||+. .-++.+|.||.+.|.+.+++.+-..-|+++.|-+-++||.-+|..++++. |..-|..++|+.+...++.+
T Consensus 40 ~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltg 118 (334)
T KOG0278|consen 40 KPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTG 118 (334)
T ss_pred CchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhcc
Confidence 467755 56789999999999999999988889999999999999999999998884 55678899999999999986
Q ss_pred cCCCCCceeEEEEccCCc-eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCC
Q 020021 95 SKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQ 172 (332)
Q Consensus 95 s~~g~d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~ 172 (332)
|.+..+|++|++..+ +.+.+.+|.+.|..+-|+...+.++|++.|++||+||.+++.....+..+. .....++++
T Consensus 119 ---g~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d 195 (334)
T KOG0278|consen 119 ---GQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD 195 (334)
T ss_pred ---chHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccC
Confidence 458899999998744 678899999999999999988999999999999999999999888887654 446778899
Q ss_pred CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021 173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (332)
Q Consensus 173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (332)
+.+++.+.++.|++||..++.. +..+. -+..|.+...+|+...+++|+.|..++.||..+|+-+..+. .+|..
T Consensus 196 G~ilTia~gssV~Fwdaksf~~--lKs~k---~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--kgh~g 268 (334)
T KOG0278|consen 196 GRILTIAYGSSVKFWDAKSFGL--LKSYK---MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--KGHFG 268 (334)
T ss_pred CCEEEEecCceeEEeccccccc--eeecc---CccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--cCCCC
Confidence 9999999999999999876532 22222 23467888999999999999999999999999998876652 36778
Q ss_pred cceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021 253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286 (332)
Q Consensus 253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~ 286 (332)
+|.++.|||||...|+||+||+||+|.+..++..
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999999998766543
No 40
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.6e-31 Score=218.59 Aligned_cols=272 Identities=20% Similarity=0.289 Sum_probs=208.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~ 113 (332)
+..|++|.|+|.++.|+.+++||++|+||+...+.+..+ .|..++..++|.+. ..++++ +.|+.|+.+|+++++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G---~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTG---GLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEe---ccCceEEEEEecCCcc
Confidence 567999999999999999999999999999987655555 35567888898874 355555 4589999999998764
Q ss_pred EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCC
Q 020021 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 193 (332)
Q Consensus 114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~ 193 (332)
..+..|...|.++.+++-...++|||||++|++||.+...+...+....+..+.-..+..++.++.+..+.+||+|+..
T Consensus 88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 3567799999999999988899999999999999998755554443333222222234455556778999999999764
Q ss_pred CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC----eEeEEeeecCCC------CCcceEEEECCCC
Q 020021 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPVS------RNSTLEASFSPEG 263 (332)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~------~~~~~~v~~spdg 263 (332)
.. ++. ....-.-.++++++-|.+.-+++++.||+|.+=..... .....|+.+... ..+|.+++|+|--
T Consensus 167 ~~-~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 167 EP-FQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ch-hhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 32 211 11111235788999999999999999999988554433 122233322111 2367789999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 264 MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
..+|||+.||.|.+||+.+.+.+..+...+..|..++|+-||.+|+++++
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999888888999999999999999876
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-31 Score=241.83 Aligned_cols=278 Identities=18% Similarity=0.332 Sum_probs=235.9
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
++.||...|.+++||.+...++||+. ++++||+..+.+|++++... .+.+.+|-|....++.+.. .+.+.++|+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vfdl 441 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVFDL 441 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEEEe
Confidence 47899999999999998877777654 57999999999999999765 5778899999999999876 567999999
Q ss_pred cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-----E---E-----EEEEec-CceeEEEcCCCe
Q 020021 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----C---Q-----GLLRVQ-GRPAAAYDDQGL 174 (332)
Q Consensus 109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-----~---~-----~~~~~~-~~~~~~~~~~~~ 174 (332)
.+...+.+.+.|.+.|+.++.+||++.++|||.|.+|++||+.--. . + .++.+. ...++.++|++.
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 9999889999999999999999999999999999999999964211 1 1 111221 234678889999
Q ss_pred EEEEEe-CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021 175 VFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (332)
Q Consensus 175 ~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (332)
+++++. |+++++|=+.+.+ + ..++=||.-+|.++.+|||++++++|+.|+.|++|-+.-|.+-..+- .|...
T Consensus 522 ~LaVsLLdnTVkVyflDtlK---F-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdDS 594 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLK---F-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDDS 594 (888)
T ss_pred EEEEEeccCeEEEEEeccee---e-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccCc
Confidence 999885 9999999765432 1 23556788899999999999999999999999999998887655543 46678
Q ss_pred ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 254 TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
+.+|.|-|+..++.|+|.|+.|+-||-.+-+.+..+.+|...|+|++.+|+|.+++++|.| +++|.
T Consensus 595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 8999999999999999999999999999989999999999999999999999999999998 55553
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=246.38 Aligned_cols=248 Identities=23% Similarity=0.388 Sum_probs=205.1
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.+.+.+.+|+..|+.++|+|++.++++++.|+++||||+ ..+.+++++.+|...|..++|++.++.+++++. |++|
T Consensus 194 ~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tv 270 (456)
T KOG0266|consen 194 NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTV 270 (456)
T ss_pred hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcE
Confidence 366677999999999999999999999999999999999 667999999999999999999999977777653 8999
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce--EEEEEEecC----ceeEEEcCCCeEEE
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQG----RPAAAYDDQGLVFA 177 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~ 177 (332)
|+||++++++...+.+|.+.|++++|++++..|++++.|+.|++||..++. +...+.... ...+.+++++.++.
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence 999999999999999999999999999999999999999999999999988 444443322 23567778777666
Q ss_pred EEe-CCEEEEEECccCCCCCeeEEEecCCCC---CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021 178 VAF-GGYIRMFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (332)
Q Consensus 178 ~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~---~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (332)
++. |+.+++||++..... ....++.. .+....++++|+++++++.|+.|++||..++..+..+..+. ...
T Consensus 351 ~~~~d~~~~~w~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~--~~~ 424 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSV----GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS--KAA 424 (456)
T ss_pred EecCCCeEEEEEccCCcce----eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC--CCc
Confidence 664 679999999864321 11122222 23344558899999999999999999999887777666332 567
Q ss_pred ceEEEECCCCCEEEEEc--CCCcEEEEECC
Q 020021 254 TLEASFSPEGMFVISGS--GDGSVYAWSVR 281 (332)
Q Consensus 254 ~~~v~~spdg~~l~sgs--~Dg~i~vWd~~ 281 (332)
+..++++|..+++++++ .|+.+++|...
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 77889999999999998 78999999753
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-31 Score=241.04 Aligned_cols=287 Identities=22% Similarity=0.296 Sum_probs=241.0
Q ss_pred hcccceeEeccCCCcEEEEEE-CCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 22 QSMEVGMSFRDYNGRISSMDF-HKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~-s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
..++..+.+.|.+++|..++| .|+.++||.++....+|+|++.+..|. -+.+|...|.++.....+..+++++. |
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK---D 386 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK---D 386 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecC---C
Confidence 457888899999999999999 588899999999999999999988886 78899999998887777777777765 9
Q ss_pred ceeEEEEccCCce----EEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEE---EEEE--------ecCc
Q 020021 101 ESLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ---GLLR--------VQGR 164 (332)
Q Consensus 101 ~~v~v~d~~~~~~----~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~---~~~~--------~~~~ 164 (332)
+++++|.++++.. +....||++.|.+++++..+ .+|+|+|.|.++++|++...+.. ..+. ....
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 9999998855442 44567999999999997643 59999999999999998652211 1111 1123
Q ss_pred eeEEEcCCCeEEE-EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021 165 PAAAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 243 (332)
Q Consensus 165 ~~~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~ 243 (332)
+++.+.|+..+++ ++.|.+.++|++.+.. ....+.||.-.+-+|.|+|..+.+++++.|++|+||.+.+..++.+
T Consensus 467 N~Vaia~ndkLiAT~SqDktaKiW~le~~~----l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 467 NCVAIAPNDKLIATGSQDKTAKIWDLEQLR----LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred cceEecCCCceEEecccccceeeecccCce----EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence 5667777666555 5568999999997321 2345678989999999999999999999999999999999999999
Q ss_pred eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
++ +|...|.++.|-.+|.+|+|+++||-|++|++.+.+++.++-.|+..|+.++-+|...+++||+.| +.+|-
T Consensus 543 ~e---GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 543 FE---GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ec---CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 98 677889999999999999999999999999999999999999999999999999999999999998 55563
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=226.35 Aligned_cols=283 Identities=19% Similarity=0.346 Sum_probs=234.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--------ecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--------SKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
|....+.|..|||||+||+|||.||.|-+||..+|+..+.++ .+..+|.+++|+.+...+++++. |+.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcE
Confidence 344568899999999999999999999999999998765443 34567899999999998887764 8899
Q ss_pred EEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCC-eEEEEE
Q 020021 104 RLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVA 179 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~ 179 (332)
++|.+.+|.|++.|. .|+..|+++.|+.|+..+.|+|.|.++|+--+++++++..++.+. .+-+.+.++| .+++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 999999999999887 899999999999999999999999999999999999988887653 3445666655 678888
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
.||+|++|+.++.+ -...+...+...+++.+..-|.. ..++++...++++|.++. |+.++.+....-..+...+++
T Consensus 368 sDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 99999999987532 22234444455577888777755 578888889999999975 788887764333345566788
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
.||.|.++.+.++|+.+++|.+.+|+.-.+++.|...+-.++-+|-.+++++-+.| +++|.|
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999998 666643
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=237.93 Aligned_cols=257 Identities=20% Similarity=0.322 Sum_probs=206.9
Q ss_pred eeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEE
Q 020021 13 SLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI 92 (332)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (332)
.++||+.. .+.+++++|.||+.+|..++|+++|..++|+|.|+++++||+++|.|+..+.... .+.++.|+|++..++
T Consensus 238 ~vklW~vy-~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-~~~cvkf~pd~~n~f 315 (503)
T KOG0282|consen 238 LVKLWNVY-DDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-VPTCVKFHPDNQNIF 315 (503)
T ss_pred eEEEEEEe-cCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-CceeeecCCCCCcEE
Confidence 45666543 3688999999999999999999999999999999999999999999998886543 467889999995544
Q ss_pred EecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE---ecCceeEEE
Q 020021 93 YSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAY 169 (332)
Q Consensus 93 ~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~~~~~ 169 (332)
.+ ++.|+.|+.||+.+++.++.+..|.+.|..+.|-++|++|+|.+.|++++||+.+.+-.+..+. ....+++..
T Consensus 316 l~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 316 LV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL 393 (503)
T ss_pred EE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec
Confidence 43 2458999999999999999999999999999999999999999999999999998776554432 234466677
Q ss_pred cCCCeEEE-EEeCCEEEEEECccCC----CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021 170 DDQGLVFA-VAFGGYIRMFDARKYE----KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244 (332)
Q Consensus 170 ~~~~~~~~-~~~~~~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (332)
+|.+..++ -+.|+.|.++.+.... ...+.-..++| -...|.|||||++|++|+.||.+.+||..+.+++..+
T Consensus 394 ~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG---ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 394 HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG---YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred CCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC---ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence 77666554 4568999999754221 11121112222 3456899999999999999999999999988877766
Q ss_pred eecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEE
Q 020021 245 NVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWS 279 (332)
Q Consensus 245 ~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd 279 (332)
. .|..+++.+.|+|. -..+||++.||.|++||
T Consensus 471 k---ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 K---AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred c---cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 5 45688899999995 46899999999999996
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.1e-32 Score=217.79 Aligned_cols=281 Identities=17% Similarity=0.313 Sum_probs=229.7
Q ss_pred ceeEeccCCCcEEEEEEC---CCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021 26 VGMSFRDYNGRISSMDFH---KSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s---~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 102 (332)
...++.||+.+|-.++|| |+|-+|++++.|+.-.+-+-++|.=+-++.+|...|...++..+...-++++ .|-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaa---adft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAA---ADFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhc---ccch
Confidence 346789999999999998 6899999999999999999999999999999999999999888876655554 3889
Q ss_pred eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-EEEec--CceeEEE-cCCCeEEEE
Q 020021 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQ--GRPAAAY-DDQGLVFAV 178 (332)
Q Consensus 103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~ 178 (332)
.++||.-+|..++.|. |+.-|.+++|+.|.++|+||++++.+|++|++..+... .+..+ +.-.+.+ ..+..++++
T Consensus 83 akvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 9999999998888886 88999999999999999999999999999987654221 22111 1112233 445667777
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
+.|++||+||.|+... +.++. -..+++++.+|+||+++..+ ..+.|..||..+-.++..+... ..|.+..
T Consensus 162 add~tVRLWD~rTgt~----v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P----~nV~SAS 231 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTE----VQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP----CNVESAS 231 (334)
T ss_pred ccCCceEEEEeccCcE----EEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc----ccccccc
Confidence 8899999999987542 11221 12578999999999976554 5568999999988888877642 3456778
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
++|+-.++++|++|..++.||..+++.+..+ ..|.++|.||.|+|||...++||.| +++|..
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 9999999999999999999999999999886 8999999999999999999999999 666653
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=8.1e-31 Score=243.28 Aligned_cols=261 Identities=21% Similarity=0.329 Sum_probs=198.4
Q ss_pred ceeEecHHHHhc-----ccceeEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC-------------------
Q 020021 12 VSLELSEEILQS-----MEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA------------------- 66 (332)
Q Consensus 12 ~~~~~~~~~~~~-----~~~~~~l~-~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~------------------- 66 (332)
-.++++...+.. +...+.+. +|.++|.++.||+||+||||||.|+.||||.+..-
T Consensus 239 ~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~ 318 (712)
T KOG0283|consen 239 SRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA 318 (712)
T ss_pred ceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh
Confidence 344555554422 33344466 89999999999999999999999999999987440
Q ss_pred -----------------------------------------eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 67 -----------------------------------------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 67 -----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
+.++.+.+|...|..+.|+.++ +++++ ++|.+|||
T Consensus 319 ~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSS---SMDKTVRL 394 (712)
T KOG0283|consen 319 NSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSS---SMDKTVRL 394 (712)
T ss_pred ccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEec---cccccEEe
Confidence 0112345666667778887664 45554 36999999
Q ss_pred EEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021 106 LSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 184 (332)
Q Consensus 106 ~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 184 (332)
|++...+++++|. |.+.|+||+|+| |.++|+|||-|+.||||++...+ |
T Consensus 395 Wh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-----------------------------V 444 (712)
T KOG0283|consen 395 WHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-----------------------------V 444 (712)
T ss_pred ecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe-----------------------------e
Confidence 9999999999987 999999999999 88899999999999999985443 2
Q ss_pred EEE-ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-----CCCcceEEE
Q 020021 185 RMF-DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEAS 258 (332)
Q Consensus 185 ~vw-d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~v~ 258 (332)
-.| |++ .-|++++|+|||++.++|+.+|.+++|+....++...+..... ....|+.+-
T Consensus 445 v~W~Dl~----------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 445 VDWNDLR----------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred Eeehhhh----------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 233 222 2478999999999999999999999999987777655543211 123678887
Q ss_pred ECCCC-CEEEEEcCCCcEEEEECCCCceEEEecCCCCC--CceEEeCCCeeEEEeccce--EEEecccc
Q 020021 259 FSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTE--PPVIKWTPGSLMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 259 ~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~t~~~d--~~~w~~~~ 322 (332)
|.|.. ..++..+.|..|||+|..+.+.+..++++... -..-+|+.||+++++++.| +.+|..+.
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 77643 35777889999999999888888888765432 2446699999999999988 67776543
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=3.8e-32 Score=233.28 Aligned_cols=264 Identities=18% Similarity=0.318 Sum_probs=218.5
Q ss_pred CCCCCccccccceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccccee
Q 020021 1 MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD 80 (332)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~ 80 (332)
|+|+|++| +.||+- .++.....+.+|..+|.++.|+++|.+++||..||.||+|+.+.....-....|...|.
T Consensus 112 ltgs~SGE-----FtLWNg--~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIR 184 (464)
T KOG0284|consen 112 LTGSQSGE-----FTLWNG--TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIR 184 (464)
T ss_pred Eeeccccc-----EEEecC--ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhh
Confidence 57889886 788886 45555566899999999999999999999999999999999876554433344457899
Q ss_pred EEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE
Q 020021 81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 160 (332)
Q Consensus 81 ~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 160 (332)
.++|+|....+++++. |++|++||....+.-..+.||.-.|.+++|+|....++|+|.|..|++||.+++.|+.++.
T Consensus 185 dlafSpnDskF~t~Sd---Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh 261 (464)
T KOG0284|consen 185 DLAFSPNDSKFLTCSD---DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH 261 (464)
T ss_pred eeccCCCCceeEEecC---CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh
Confidence 9999998888888875 8999999998888888899999999999999999999999999999999999999988776
Q ss_pred ecCc--eeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEcc
Q 020021 161 VQGR--PAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSF 236 (332)
Q Consensus 161 ~~~~--~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~ 236 (332)
.+.. ..+.+.+.+. +++++.|..++++|+|..+ +.+...+|...+.+++++|-. .++.+++.||.|..|.+.
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 5543 3456666554 5556678999999999543 234455777889999999955 677889999999999987
Q ss_pred CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.-+.+.. ..+.|...|++++|+|=|..|++|+.|.+++.|.-
T Consensus 338 ~~~p~~~--i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 338 LEEPLGE--IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccccC--CCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 4444433 33567889999999999999999999999999965
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=2.6e-30 Score=227.82 Aligned_cols=297 Identities=17% Similarity=0.289 Sum_probs=218.4
Q ss_pred eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee----eEEe-eecccceeEEEEccCC
Q 020021 14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC----LKTI-NSKKYGVDLVCFTSHP 88 (332)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~ 88 (332)
++..+|+. |++|+..|+++++.|.|..++|||.|.+|++||+..... .+.+ ......+.++.|++.+
T Consensus 155 IP~shEi~--------l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 155 IPGSHEIQ--------LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred CCccceEe--------ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence 55555555 999999999999999999999999999999999974322 1222 2334568899999999
Q ss_pred CEEEEecCCCCCceeEEEEccCCc---------eE---EEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceE
Q 020021 89 TTVIYSSKNGWDESLRLLSLHDNK---------YL---RYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKC 155 (332)
Q Consensus 89 ~~~~~~s~~g~d~~v~v~d~~~~~---------~~---~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~ 155 (332)
..+++.+. ..+.+|+|-...+ ++ ..-+||...+++.+|+|+.+ .|+|+|.||++|+||....+.
T Consensus 227 ~~iLvvsg---~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 227 DQILVVSG---SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CeEEEEec---CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 98887763 4578888865433 22 23468999999999999654 899999999999999865432
Q ss_pred -EEEEEecC-------ceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCC-CCCceeEEEcCCCCEEEEEc
Q 020021 156 -QGLLRVQG-------RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTT 225 (332)
Q Consensus 156 -~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~ 225 (332)
..+++... ...+.+++++..++++ .||.|.+|+.+.....+...+..+.. ..++++++||+||++|++.+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 33443211 2356778877666655 68999999987654333333332222 23899999999999999999
Q ss_pred CCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcC------CCcEEEEECCCCceEEEecCCCCCCce
Q 020021 226 MEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVASWMSFDTEPPV 298 (332)
Q Consensus 226 ~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~------Dg~i~vWd~~~~~~~~~~~~~~~~v~~ 298 (332)
.|+++++||++..+ .+.....-+ ....-+.++||||.+.|++|+. .|++.++|..+-..+..+.-.++.|..
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR 462 (641)
T ss_pred CCCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence 99999999998643 333332211 1223457899999999999964 568999999988888877666778888
Q ss_pred EEeCCCeeEEEeccce---EEEecccc
Q 020021 299 IKWTPGSLMFVTGSSE---LSFWIPDL 322 (332)
Q Consensus 299 l~~sp~~~~l~t~~~d---~~~w~~~~ 322 (332)
+.|+|--+++..+++| .-++++..
T Consensus 463 ~~WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 463 CLWHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred EeecchhhheeeecCCCceEEEECccc
Confidence 9999998888877776 23345543
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.3e-30 Score=231.01 Aligned_cols=244 Identities=20% Similarity=0.273 Sum_probs=211.7
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
+..+++|.--+-||.+..|-+..+++++|++|..||||+.++++.++++.+|..-+.+++.+|..+.++++|. |.+|
T Consensus 45 qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~i 121 (794)
T KOG0276|consen 45 QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTI 121 (794)
T ss_pred ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEE
Confidence 5677888888899999999999999999999999999999999999999999999999999999999998875 8899
Q ss_pred EEEEccCC-ceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCC---eEE
Q 020021 104 RLLSLHDN-KYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG---LVF 176 (332)
Q Consensus 104 ~v~d~~~~-~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~---~~~ 176 (332)
++||.+.+ .+.+++.||...|++++|.| |.+.|||+|-|+||++|.+.+..+..++..+ +.+++.+-+.+ .++
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99999875 46789999999999999999 7889999999999999999999888888654 55667665544 788
Q ss_pred EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256 (332)
Q Consensus 177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 256 (332)
+++.|.++++||..+.. .+..+.||...++.+.|.|.-.++++|+.||+++||...+-++..+++. .-..+++
T Consensus 202 sgaDD~tiKvWDyQtk~----CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~---gleRvW~ 274 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKS----CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY---GLERVWC 274 (794)
T ss_pred ecCCCceEEEeecchHH----HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc---CCceEEE
Confidence 88889999999986521 2335678888999999999999999999999999999888777776663 3467888
Q ss_pred EEECCCCCEEEEEcCCCcEEE
Q 020021 257 ASFSPEGMFVISGSGDGSVYA 277 (332)
Q Consensus 257 v~~spdg~~l~sgs~Dg~i~v 277 (332)
++-.+.++.++.|.++|.|.+
T Consensus 275 I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 275 IAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EeecCCCCeEEEeccCCcEEE
Confidence 888898889999988886644
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=7.9e-32 Score=227.30 Aligned_cols=267 Identities=15% Similarity=0.312 Sum_probs=205.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~ 112 (332)
-.+.|.|+.++ ...+++|..|+||+|||.++..|++.+.+|...|.++.+ +...++++++ |.+|++||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCc
Confidence 44778999886 468999999999999999999999999999887765544 5556777765 8899999999999
Q ss_pred eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE---EEEEec--CceeEEEcCCCeEEEEEeCCEEEEE
Q 020021 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ---GLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMF 187 (332)
Q Consensus 113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~vw 187 (332)
++.++-+|...|..+.|+. .+++|+|.|.+|.+||+.+..-+ ..+..+ ..+.+.|+ +..+++++.|.+|++|
T Consensus 269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVW 345 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-cceEEEecCCceEEEE
Confidence 9999999999999999974 78999999999999999765421 122222 12223333 3366667789999999
Q ss_pred ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021 188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 267 (332)
Q Consensus 188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~ 267 (332)
++.+.. + +-.+.+|.-.+-+ .-..|+++++|+.|.+|++||+..|.++..++ +|..-+.++.| |.+.++
T Consensus 346 ~~st~e---f-vRtl~gHkRGIAC--lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRF--d~krIV 414 (499)
T KOG0281|consen 346 STSTCE---F-VRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIV 414 (499)
T ss_pred ecccee---e-ehhhhccccccee--hhccCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheee--cCceee
Confidence 986532 1 1234455555443 34578999999999999999999999988776 56667777888 889999
Q ss_pred EEcCCCcEEEEECCCCce---------EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021 268 SGSGDGSVYAWSVRSGKE---------VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 268 sgs~Dg~i~vWd~~~~~~---------~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~ 322 (332)
+|+.||.|+|||+.++.. +.++..|++.|..+.| |..++++.+-| +.+|+-..
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 999999999999987653 3345678888988888 44566666544 88887543
No 52
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.8e-29 Score=233.24 Aligned_cols=230 Identities=15% Similarity=0.198 Sum_probs=177.2
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCCC-EEEEecCCCC
Q 020021 29 SFRDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW 99 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~ 99 (332)
.|.||++.|.+++|+| ++++|+||+.|++|+|||+.++ +++..+.+|...|..++|+|.+. .+++++ .
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~ 146 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---A 146 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---C
Confidence 5889999999999999 8899999999999999999764 35677889999999999999865 555553 4
Q ss_pred CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE
Q 020021 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA 179 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (332)
|++|++||+++++.+..+.+|.+.|.+++|+|+++.|++++.|++|++||+++++....+..+..
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~--------------- 211 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS--------------- 211 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC---------------
Confidence 89999999999999999999999999999999999999999999999999988765433221100
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc----CCCeEEEEEccCCeE-eEEeeecCCCCCcc
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGTL-LSTYNVKPVSRNST 254 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~ 254 (332)
.....+.+++++..+++++ .|+.|++||+++... +..... .....+
T Consensus 212 ---------------------------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~ 262 (493)
T PTZ00421 212 ---------------------------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSAL 262 (493)
T ss_pred ---------------------------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCce
Confidence 0122355667766666543 478999999876542 222221 122334
Q ss_pred eEEEECCCCCEEEEEc-CCCcEEEEECCCCceEEEec-CCCCCCceEEeCCCe
Q 020021 255 LEASFSPEGMFVISGS-GDGSVYAWSVRSGKEVASWM-SFDTEPPVIKWTPGS 305 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs-~Dg~i~vWd~~~~~~~~~~~-~~~~~v~~l~~sp~~ 305 (332)
....|+||+++|++|+ .|+.|++||+.+++.+.... .+..++..++|.|..
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 4567999999999987 49999999999988766543 244567788888854
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.8e-29 Score=203.28 Aligned_cols=278 Identities=17% Similarity=0.219 Sum_probs=221.9
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~ 109 (332)
|.||+.+++.|.|+.+|.+|+|++.|.++.+|=..+|+.+-++.+|...|.++...-+.+.+++++. |+++++||++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWDv~ 82 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWDVE 82 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999998875 9999999999
Q ss_pred CCceEEEeecccccEEEEEecCCCCeEEEeeC-----CCcEEEEeCC-------CceEEEEEEecC--ceeEEEcCCC-e
Q 020021 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-----DRTVLLWDQR-------AEKCQGLLRVQG--RPAAAYDDQG-L 174 (332)
Q Consensus 110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-----Dg~i~iWd~~-------~~~~~~~~~~~~--~~~~~~~~~~-~ 174 (332)
+|+++..++ -..+|..+.|+++|++++.... -+.|.++|++ .+.+...+..+. ...+.+.+.+ .
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 999988877 4578999999999987766543 3578899987 333333333322 2345666654 5
Q ss_pred EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (332)
Q Consensus 175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 254 (332)
++++..+|.|..||+++.. ..+.+...|...++.+.+|+|.+++++++.|.+.++||..+-+++.++.. ..++
T Consensus 162 ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t----e~Pv 234 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT----ERPV 234 (327)
T ss_pred EEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee----cccc
Confidence 6667789999999998642 22223344556899999999999999999999999999999999988863 4678
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEC--CCCc------------eEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021 255 LEASFSPEGMFVISGSGDGSVYAWSV--RSGK------------EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~vWd~--~~~~------------~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
++.+++|-..+++.|+--...-|=-. +.++ .+...++|-++|++|+|||+|+..++|+.| +++.
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 88999998888888865433322211 1122 244557899999999999999999999998 5543
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=205.23 Aligned_cols=275 Identities=14% Similarity=0.230 Sum_probs=217.2
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE--eeecccceeEEEEccCCC-EEEEecCCCCCceeE
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLR 104 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~v~ 104 (332)
+.+.+|.+.|.+|+|+.+|..|++|+.|+++++|+++....+.. +.+|...|.-+|+.|... .+++++. |.+|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEE
Confidence 66889999999999999999999999999999999987755543 456776777777776555 4555443 78999
Q ss_pred EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEe-CC
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF-GG 182 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~ 182 (332)
+||+.+++++.........|. +.|+|+|.+++.++.|-.|.+.|.++.+.....+.... ....+..++.+|.... .|
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 999999999887765555554 58999999999999999999999988776655544322 2334444454444444 48
Q ss_pred EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
+|.|......+ + ..++..|++...++.|+|+|+++++|+.|-.+.+||+...-+++.+. -+.-+|..+.||.|
T Consensus 170 ~v~ILsypsLk--p--v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~d 242 (313)
T KOG1407|consen 170 CVEILSYPSLK--P--VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHD 242 (313)
T ss_pred eEEEEeccccc--c--ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccC
Confidence 99888765432 1 23444567788899999999999999999999999987655554443 24567889999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 263 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
|++||+||+|..|-|=++++|..+..+. +.++...|+|+|...+|+-+++|
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999998864 56788999999999999988764
No 55
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-30 Score=235.07 Aligned_cols=270 Identities=19% Similarity=0.351 Sum_probs=221.3
Q ss_pred CccccccceeEecHHHHhcccceeEeccCCCcEE---EEEEC-CCCCEEEEEeCCCcEEEEEcCCCe------eeEEeee
Q 020021 5 QSEREDKVSLELSEEILQSMEVGMSFRDYNGRIS---SMDFH-KSSSYLVTASDDESIRLYDVTAAT------CLKTINS 74 (332)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~---~i~~s-~dg~~l~tgs~D~tv~iwd~~~~~------~~~~~~~ 74 (332)
|...+.||++.++++--+ .|...|. ++..+ |.++||+|||.|++||+|++..-. ++..++.
T Consensus 1 ~~rkk~kvsyVi~D~~e~---------qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~ 71 (735)
T KOG0308|consen 1 QTRKKKKVSYVIRDENEK---------QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH 71 (735)
T ss_pred CCcceeEEEEEccchhhh---------hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh
Confidence 456789999999999875 4555565 66666 456779999999999999986322 4667888
Q ss_pred cccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC--ceEEEeecccccEEEEEe-cCCCCeEEEeeCCCcEEEEeCC
Q 020021 75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYLRYFKGHHDRVVSLSL-CSSKDCFISGSLDRTVLLWDQR 151 (332)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~--~~~~~~~~h~~~V~~v~~-~~~~~~l~s~s~Dg~i~iWd~~ 151 (332)
|..+|..+....+++.++++|+ |-+|++|+.+.+ -+..+++.|.+.|.++++ .++...+||||-|+.|.+||++
T Consensus 72 HsDWVNDiiL~~~~~tlIS~Ss---DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 72 HSDWVNDIILCGNGKTLISASS---DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred hHhHHhhHHhhcCCCceEEecC---CceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 9999999888889988888875 889999999877 578889999999999999 6678899999999999999998
Q ss_pred CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEec-CCCCCceeEEEcCCCCEEEEEcCCCeE
Q 020021 152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVG-GDISDANVVKFSNDGRLMLLTTMEGHI 230 (332)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~v~~v~~s~dg~~l~~~~~dg~i 230 (332)
++... +.. ++ +.+ ...++. |+...+.+++.++.|..+++|+.++.+
T Consensus 149 ~~~~~--l~~-----------------s~-n~~-------------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 149 TGTAT--LVA-----------------SF-NNV-------------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred Ccchh--hhh-----------------hc-ccc-------------ccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 76320 000 00 000 011112 555678899999999999999999999
Q ss_pred EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEe
Q 020021 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT 310 (332)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t 310 (332)
++||.++++.+..+. +|...|..+..++||+.++|+|.||+|++||+.-.+++.++..|...|+++.-+|+-..+-+
T Consensus 196 r~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred EEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 999999999888777 57788888999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecccc
Q 020021 311 GSSELSFWIPDL 322 (332)
Q Consensus 311 ~~~d~~~w~~~~ 322 (332)
|+.|..+..-++
T Consensus 273 G~rd~~i~~Tdl 284 (735)
T KOG0308|consen 273 GGRDGNIYRTDL 284 (735)
T ss_pred cCCCCcEEeccc
Confidence 999866554333
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.2e-29 Score=207.08 Aligned_cols=249 Identities=16% Similarity=0.267 Sum_probs=200.9
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
+=...+++|.++|..+.|.+|++.|+++|.|++++.||.++|++++..+.|..-|..+.-..-+..++.+.+ -|+++|
T Consensus 81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs--dD~t~k 158 (338)
T KOG0265|consen 81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS--DDGTLK 158 (338)
T ss_pred cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecC--CCceEE
Confidence 445678899999999999999999999999999999999999999999999988888886666777776543 489999
Q ss_pred EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCC-CeEEEEEeC
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQ-GLVFAVAFG 181 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~ 181 (332)
|||+....+++++. .+-+++++.|..++..+.+|+-|+.|++||++.+.+..++..+..+ ....++. ..+++-+.|
T Consensus 159 l~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 159 LWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred EEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence 99998877777664 3567899999999999999999999999999988887777655433 3344444 456666779
Q ss_pred CEEEEEECccCCCCCe--eEEEecCCC--CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 182 GYIRMFDARKYEKGPF--DIFSVGGDI--SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~--~~~~~~~~~--~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
.++++||+|-+-.... .++.-+.|. .....+++||+++.+.+++.|+.+++||......+..+ ++|...|+++
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl---pGh~gsvn~~ 314 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL---PGHYGSVNEV 314 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc---CCcceeEEEe
Confidence 9999999997654322 233222221 13456889999999999999999999998776655444 4778899999
Q ss_pred EECCCCCEEEEEcCCCcEEEEE
Q 020021 258 SFSPEGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 258 ~~spdg~~l~sgs~Dg~i~vWd 279 (332)
.|+|...+|.+++.|++|++=+
T Consensus 315 ~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 315 DFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eecCCCcEEEEeccCceeEeec
Confidence 9999999999999999998743
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=219.04 Aligned_cols=253 Identities=19% Similarity=0.293 Sum_probs=199.3
Q ss_pred eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021 14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 93 (332)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (332)
+++|+. .+.+..+.|.||+|+|.|+.|.. +.|+|||.|.||+|||++++++++++..|-..|.-+.|+. ..+++
T Consensus 219 ikiWD~--n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvt 292 (499)
T KOG0281|consen 219 IKIWDK--NSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVT 292 (499)
T ss_pred eEEecc--ccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEE
Confidence 445542 45677788999999999999974 5999999999999999999999999999988887777764 47788
Q ss_pred ecCCCCCceeEEEEccCCc---eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEc
Q 020021 94 SSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD 170 (332)
Q Consensus 94 ~s~~g~d~~v~v~d~~~~~---~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~ 170 (332)
++. |.++++||+.... +.+.+.||.+.|+.++|.. ++++|+|.|.||++|++.+..++.++..+..-.++..
T Consensus 293 cSk---DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 293 CSK---DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 367 (499)
T ss_pred ecC---CceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehh
Confidence 775 8999999998754 3457889999999999864 6999999999999999999999988877665555555
Q ss_pred CCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe-----
Q 020021 171 DQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----- 244 (332)
Q Consensus 171 ~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~----- 244 (332)
..+ .++++++|.+||+||+....- .--++||..-+.++.| |.+.+++|+-||+|++||+..+......
T Consensus 368 Yr~rlvVSGSSDntIRlwdi~~G~c----LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 368 YRDRLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred ccCeEEEecCCCceEEEEeccccHH----HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchH
Confidence 444 566677899999999875321 1224567667888888 4678999999999999998765432111
Q ss_pred -eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021 245 -NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 245 -~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
.....|.+.+..+-| |...+++.+.|.+|-|||..++..
T Consensus 442 l~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred HHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 001234567777777 788999999999999999987654
No 58
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=205.77 Aligned_cols=286 Identities=18% Similarity=0.274 Sum_probs=211.2
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-----eE-EeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-----LK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~-----~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
..+|+||.+.|++++|+.||++|||++.|++||||++.+.+. ++ +++. ...+.+.|.|+...++....+ .
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~--g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR--G 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEcc--C
Confidence 356899999999999999999999999999999999976432 11 1221 135788999999988777654 3
Q ss_pred ceeEEEEccC---CceE---------EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--cee
Q 020021 101 ESLRLLSLHD---NKYL---------RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPA 166 (332)
Q Consensus 101 ~~v~v~d~~~---~~~~---------~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~ 166 (332)
+++++|-+.- |... ..-+-|+-.|..+-....+++++|++.|-+|.+||++ ++.+..+.... ..-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 6888887632 2221 1123466677777777888999999999999999998 66665554332 223
Q ss_pred EEEcCCCeEEE-EEeCCEEEEEECccCCCCCee----EEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC----
Q 020021 167 AAYDDQGLVFA-VAFGGYIRMFDARKYEKGPFD----IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---- 237 (332)
Q Consensus 167 ~~~~~~~~~~~-~~~~~~i~vwd~~~~~~~~~~----~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~---- 237 (332)
+..+|+|++++ +++.-.|++|.+-..+.+.++ .+.+.||.+.|...+||++.+.+++.+.||++++||..-
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 56677776554 557888999997655555443 567889999999999999999999999999999999742
Q ss_pred ---CeEeEEeeec-CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEecc
Q 020021 238 ---GTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 238 ---~~~~~~~~~~-~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
.+.+.++... ........+++.||.|+.||.. ...++.++..++++...++ ..|...|.+++|+|+|++++|++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 1222222110 0112233479999999998865 4567999999998876665 46888999999999999999987
Q ss_pred ce-EEEe
Q 020021 313 SE-LSFW 318 (332)
Q Consensus 313 ~d-~~~w 318 (332)
.- +++.
T Consensus 393 dr~vrv~ 399 (420)
T KOG2096|consen 393 DRYVRVI 399 (420)
T ss_pred ceeeeee
Confidence 64 5443
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9e-29 Score=231.30 Aligned_cols=252 Identities=21% Similarity=0.363 Sum_probs=201.4
Q ss_pred cceeE-eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 25 EVGMS-FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 25 ~~~~~-l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.+..+ |.||.+.|.+++|..-+++|++|+.|+|+|+||..+|.|.+.+.+|...+.++.. .+..++.+ ++|++|
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sg---s~D~tV 313 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSG---SRDNTV 313 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeec---cCCceE
Confidence 34445 9999999999999877889999999999999999999999999999877665543 33344443 469999
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEEeC
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFG 181 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 181 (332)
++|++++++++..+.+|.++|.++... +.++++|+.|++|++||+++++|+..++.+... ...+.....+++++.|
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D 391 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLD 391 (537)
T ss_pred EEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeec
Confidence 999999999999999999999999987 789999999999999999999999888765432 2233333778888899
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp 261 (332)
++|++||++... .....+.+|.+-+. .+...+..+++++.|++|++||...+++++.+... +...+..+++.
T Consensus 392 ~~IkvWdl~~~~---~c~~tl~~h~~~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~- 463 (537)
T KOG0274|consen 392 TTIKVWDLRTKR---KCIHTLQGHTSLVS--SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG- 463 (537)
T ss_pred cceEeecCCchh---hhhhhhcCCccccc--ccccccceeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC-
Confidence 999999998752 11233445544443 33456789999999999999999999999887642 33555555554
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021 262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSF 292 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~ 292 (332)
...+++++.||++++||+.+++.+..+..+
T Consensus 464 -~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 464 -KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred -cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 578888999999999999999988776433
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=229.35 Aligned_cols=278 Identities=19% Similarity=0.305 Sum_probs=225.7
Q ss_pred eEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 28 MSFRD-YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 28 ~~l~~-h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
+.+.+ |...+.+..|. .+++++++.|.+|++||..++..+.+ +.+|...|..+++...+..+++++. |.++|+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rv 275 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERV 275 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEe
Confidence 44454 56778888888 56999999999999999999998888 9999999999999987778888875 899999
Q ss_pred EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-EEEcCCCeEEEEEeCCEE
Q 020021 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFAVAFGGYI 184 (332)
Q Consensus 106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 184 (332)
||..+|++..++.||++.|.++...+ ..+++||+|.+|++|++.++.++.++..+..+. ...-....+++++.|++|
T Consensus 276 Wd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 276 WDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV 353 (537)
T ss_pred EecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceE
Confidence 99999999999999999999987754 678999999999999999999998887543332 233347788889999999
Q ss_pred EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC-eEeEEeeecCCCCCcceEEEECCCC
Q 020021 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEG 263 (332)
Q Consensus 185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~v~~spdg 263 (332)
++||.+..+ ....+.+|...|.++.+.+. ..+++|+.|++|++||+.+. ++++.+. +|...+.. +...+
T Consensus 354 ~VW~~~~~~----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~--l~~~~ 423 (537)
T KOG0274|consen 354 KVWDPRTGK----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSS--LLLRD 423 (537)
T ss_pred EEEEhhhce----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc---CCcccccc--ccccc
Confidence 999998432 23466788888988877665 88999999999999999998 7777765 34444433 34578
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEecC-CCCCCceEEeCCCeeEEEeccce--EEEecccccc
Q 020021 264 MFVISGSGDGSVYAWSVRSGKEVASWMS-FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSK 324 (332)
Q Consensus 264 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~ 324 (332)
++|.+++.|++|++||..+++++..+.. |...+..+++. ...+++++.| +++|+....+
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 9999999999999999999999999887 66778888876 3344555554 8888764433
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.2e-27 Score=208.04 Aligned_cols=244 Identities=27% Similarity=0.454 Sum_probs=203.7
Q ss_pred ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
....+.+|...+..+.|+|+++++++++.|+.+++||+.+++.+..+..|...+..+++.+++..++.+. .|+.+++
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~ 119 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKV 119 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEE
Confidence 5567889999999999999999999999999999999998888888888888899999999876666554 3789999
Q ss_pred EEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCC-eEEEEEeCC
Q 020021 106 LSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGG 182 (332)
Q Consensus 106 ~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 182 (332)
||+.+++....+..|...|.++.|+|++.++++++.|+.+++||++++++...+..+. .....+.+++ .+++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence 9999888888999999999999999999999999889999999998877766665433 2345666766 566666689
Q ss_pred EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
.+++||++.... ......+...+..++++|++.++++++.+|.|++||..+++....+. .+...+..++|+|+
T Consensus 200 ~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~ 272 (289)
T cd00200 200 TIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPD 272 (289)
T ss_pred cEEEEECCCCce----ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCC
Confidence 999999975321 11222344578899999999999988889999999999888777665 45567889999999
Q ss_pred CCEEEEEcCCCcEEEEE
Q 020021 263 GMFVISGSGDGSVYAWS 279 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd 279 (332)
+++|++++.||.|++|+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 99999999999999996
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=204.67 Aligned_cols=240 Identities=19% Similarity=0.317 Sum_probs=191.7
Q ss_pred CCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcC-CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021 33 YNGRISSMDFHKSS-SYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (332)
Q Consensus 33 h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~ 110 (332)
-++.++.++|++.. +.+++++.||+++|||+. ....++.++.|...|.++.+.+-.+..+..+ +||++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCCC
Confidence 35678999999875 688999999999999975 3457888899999999999998887776665 6999999999999
Q ss_pred CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEc--CCCeEEEEEeCCEEE
Q 020021 111 NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYD--DQGLVFAVAFGGYIR 185 (332)
Q Consensus 111 ~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~i~ 185 (332)
++.++++.||...|....|+| .++.|+++|.|+++++||++.......+..+... ++.++ +...+++++.|+.||
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 999999999999999999999 6889999999999999998764332234443322 22222 233455566799999
Q ss_pred EEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECC-C
Q 020021 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSP-E 262 (332)
Q Consensus 186 vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~sp-d 262 (332)
.||+|+.+.+ ++.+.+|.-.|+.++|||.. .+|++++-|-+++|||...+.. +.++. .|...+..+.||+ +
T Consensus 217 ~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~---~HtEFv~g~Dws~~~ 290 (311)
T KOG0277|consen 217 GWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD---HHTEFVCGLDWSLFD 290 (311)
T ss_pred EEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh---ccceEEecccccccc
Confidence 9999998754 34455777789999999976 6788999999999999875543 22232 5667777888887 6
Q ss_pred CCEEEEEcCCCcEEEEEC
Q 020021 263 GMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~ 280 (332)
..++|+++.|+.++||+.
T Consensus 291 ~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 291 PGQVASTGWDELLYVWNP 308 (311)
T ss_pred Cceeeecccccceeeecc
Confidence 789999999999999984
No 63
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=8.7e-28 Score=225.49 Aligned_cols=239 Identities=13% Similarity=0.217 Sum_probs=177.8
Q ss_pred cceeEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCe--------eeEEeeecccceeEEEEccCCCEEEEec
Q 020021 25 EVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~s 95 (332)
.....|.+|.++|.+++|+|+ +++|+||+.|++|+|||+.++. ++..+.+|...|..++|+|++..+++++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 456789999999999999997 7899999999999999997542 3446778888999999999988765432
Q ss_pred CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021 96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 175 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (332)
+.|++|++||+.+++.+..+. |...|.+++|+|+|++|++++.|++|++||++++.....+..+... .
T Consensus 145 --S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~---------~ 212 (568)
T PTZ00420 145 --GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG---------K 212 (568)
T ss_pred --eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC---------c
Confidence 348999999999988777775 6688999999999999999999999999999988765444321100 0
Q ss_pred EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC----eEEEEEccC-CeEeEEeeecCCC
Q 020021 176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVS 250 (332)
Q Consensus 176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~ 250 (332)
. .+ .+....|++++.++++++.++ +|++||++. +..+...... .+
T Consensus 213 ~-------s~----------------------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~ 262 (568)
T PTZ00420 213 N-------TK----------------------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NA 262 (568)
T ss_pred e-------eE----------------------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CC
Confidence 0 00 011235778999888887764 799999985 4555544322 12
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEeCCCee
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSL 306 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp~~~ 306 (332)
...+.-....++|.++++|+.|++||+|++..+. +..+. .+..+...++|.|...
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 2222223335669999999999999999997764 33332 2456778899999753
No 64
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=7.7e-29 Score=209.89 Aligned_cols=252 Identities=19% Similarity=0.290 Sum_probs=212.8
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
-+.++..+|.||-..|..+++|+...||++++.|+.|+-||++.++.++.|.+|-.+|.++..+|.-+.+++++ .|.
T Consensus 181 atg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g---rDs 257 (460)
T KOG0285|consen 181 ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG---RDS 257 (460)
T ss_pred ccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC---Ccc
Confidence 34566778999999999999999999999999999999999999999999999999999999999888888775 489
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEE
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVA 179 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 179 (332)
++|+||+.+...+.++.||+.+|..+.+.|-...++|||.|++|++||++.++...++..+.+. +.+.+|....|+++
T Consensus 258 t~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 258 TIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred eEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhcc
Confidence 9999999999999999999999999999998889999999999999999999887766555443 45667888888888
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec--CC---CCCcc
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--PV---SRNST 254 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~~~~ 254 (332)
.-+.|+-|++... .+.. .+.+|..-+++++...|| ++++|+++|.+..||..+|...+..... ++ ....+
T Consensus 338 s~dnik~w~~p~g---~f~~-nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI 412 (460)
T KOG0285|consen 338 SPDNIKQWKLPEG---EFLQ-NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI 412 (460)
T ss_pred CCccceeccCCcc---chhh-ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccce
Confidence 8888999998643 2222 266777788999998887 4688999999999999998765544211 11 13356
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021 255 LEASFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
.+.+|...|..|+||..|++|++|.-.
T Consensus 413 ~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 413 FASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eEEeecccCceEEeccCCcceEEEecc
Confidence 778999999999999999999999753
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-29 Score=232.20 Aligned_cols=264 Identities=17% Similarity=0.294 Sum_probs=212.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~ 110 (332)
..-+..|.+++|+|..++++++-..|.|.+||...+.++..+..|..+|..++|+|....++++. -|-.|+||+.++
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG---DDykIkVWnYk~ 82 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG---DDYKIKVWNYKT 82 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC---CccEEEEEeccc
Confidence 33466799999999999999999999999999999999999999999999999999999888764 488999999999
Q ss_pred CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC-CCeEEEEEeCCEEEEE
Q 020021 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD-QGLVFAVAFGGYIRMF 187 (332)
Q Consensus 111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~i~vw 187 (332)
.+++.++.||.+.|+.+.|++...+++|+|.|.||+||++.+++|+..+..+. +.++.|+| ...+++++.|.+||+|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 99999999999999999999999999999999999999999999998887654 45778888 5577777889999999
Q ss_pred ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE---EEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021 188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM---LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264 (332)
Q Consensus 188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~ 264 (332)
|+.-.+.... ++. ++.=-+.|... +.+..|-. ..+.++ +|...+..++|+|.-.
T Consensus 163 DisGLRkk~~---------~pg-~~e~~~~~~~~~~dLfg~~DaV----------VK~VLE---GHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 163 DISGLRKKNK---------APG-SLEDQMRGQQGNSDLFGQTDAV----------VKHVLE---GHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eecchhccCC---------CCC-CchhhhhccccchhhcCCcCee----------eeeeec---ccccccceEEecCCcc
Confidence 9865433211 110 00000001100 11111211 112233 5677888999999999
Q ss_pred EEEEEcCCCcEEEEECCCCce--EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 265 FVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 265 ~l~sgs~Dg~i~vWd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
.++||++|+-|++|.+...+. +.++.+|...|+++-|+|...++.+.|.| +++|+.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 999999999999999965443 67789999999999999999999999999 666665
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=215.52 Aligned_cols=250 Identities=16% Similarity=0.267 Sum_probs=198.9
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCCCEEEEecCCCCC
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
..+++.++|.||..+|.-|.||||.++|++++.|..+++||+.+|++.+.+... ...+.+++|.|++..+++++. |
T Consensus 257 ~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---d 333 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---D 333 (519)
T ss_pred cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---C
Confidence 348999999999999999999999999999999999999999999999888654 677899999999999999875 8
Q ss_pred ceeEEEEccCCceEEEeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEEEE
Q 020021 101 ESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAV 178 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 178 (332)
.++..||+... .+...++-. ..|..++.++||+.+++...|..|++++.++..+...+.... ......+.++.++.+
T Consensus 334 r~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 334 RTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred CcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence 89999998654 344555543 468999999999999999999999999987766665554432 334556677777766
Q ss_pred Ee-CCEEEEEECccCCCCCeeEEEecCCCCC--ceeEEEc-CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021 179 AF-GGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (332)
Q Consensus 179 ~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~v~~s-~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 254 (332)
.. +.++++||+..... +....||... +..-+|. .+.+++++|+.|+.|+||+..+|+++.++. +|..++
T Consensus 413 nL~~qei~LWDl~e~~l----v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~v 485 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKL----VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTV 485 (519)
T ss_pred EcccCeeEEeecchhhH----HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---CCccee
Confidence 64 78999999873211 0111122211 1122343 355899999999999999999999998886 677899
Q ss_pred eEEEECCCC-CEEEEEcCCCcEEEEECCC
Q 020021 255 LEASFSPEG-MFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 255 ~~v~~spdg-~~l~sgs~Dg~i~vWd~~~ 282 (332)
.+|+|+|.. .++||||+||+||||-...
T Consensus 486 NcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 486 NCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999965 7899999999999998754
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2e-27 Score=236.82 Aligned_cols=244 Identities=14% Similarity=0.197 Sum_probs=193.2
Q ss_pred CCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEcc-CCCEEEEecCCCCCceeEEEEccC
Q 020021 33 YNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD 110 (332)
Q Consensus 33 h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d~~v~v~d~~~ 110 (332)
+...|.+++|+| ++++|++++.|++|+|||+.+++.+..+..|...|..++|++ ++..+++++. |++|++||+.+
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCC
Confidence 346799999986 478999999999999999999999999999999999999997 5667777754 88999999999
Q ss_pred CceEEEeecccccEEEEEec-CCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecC--ceeEEEcCCCeEEEEEeCCEEEE
Q 020021 111 NKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRM 186 (332)
Q Consensus 111 ~~~~~~~~~h~~~V~~v~~~-~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v 186 (332)
+..+..+..| ..|.++.|+ +++..|++|+.|++|++||++..+ +...+..+. .....+.+...+++++.|+.|++
T Consensus 608 ~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~iki 686 (793)
T PLN00181 608 GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKL 686 (793)
T ss_pred CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEE
Confidence 9888888755 679999995 478999999999999999998754 233333222 23445555667778888999999
Q ss_pred EECccCCCC--CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec----------CCCCCcc
Q 020021 187 FDARKYEKG--PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNST 254 (332)
Q Consensus 187 wd~~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~~ 254 (332)
||++..... ...+....+|...+..++|+|++.++++++.|+.|++|+...+..+..+... ..+...+
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 998753211 1123455677778889999999999999999999999998766544333211 1123467
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 255 LEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.+++|+|++.+|++|+.||.|+||++
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEEec
Confidence 89999999999999999999999996
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=7.7e-28 Score=204.30 Aligned_cols=246 Identities=14% Similarity=0.232 Sum_probs=201.5
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.++...+.||..+|+++.||.||.+||||+.+|.|+||+..++.....+...-..+.-++|+|.+..+++++. |+.+
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsv 172 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSV 172 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcE
Confidence 4567789999999999999999999999999999999999999888777655556778999999988888876 7899
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE------ecCc-------------
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR------VQGR------------- 164 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~------~~~~------------- 164 (332)
-.|.+.++...+.+.||..++++=.|.|+|++++++..||+|++||+.++++...+. .+..
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 999999988899999999999999999999999999999999999999987765543 1000
Q ss_pred --------------eeEEEc--------------------C---CCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCC
Q 020021 165 --------------PAAAYD--------------------D---QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDI 206 (332)
Q Consensus 165 --------------~~~~~~--------------------~---~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~ 206 (332)
...+.. + .-.+++++ .||+|.+||+...... ... .|.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---~~c--~he 327 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---HIC--EHE 327 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh---eec--cCC
Confidence 000000 0 00223333 4899999998654321 111 244
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
..|..+.|-+ -.++++++.+|.|+.||.++|+++.++. +|...|.+.+++||.++++|+|.|++.+||++.
T Consensus 328 ~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~---GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 328 DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT---GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe---cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 5788999988 6789999999999999999999999887 567789999999999999999999999999875
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-28 Score=201.30 Aligned_cols=264 Identities=18% Similarity=0.290 Sum_probs=208.3
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC--EEEEecCCCCC
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWD 100 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d 100 (332)
.+...-.|.+|.++|++++.+ +.++||||.|-+|+|||......+..+..|...++.+.|.+.-. .+++++. |
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd---D 106 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD---D 106 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC---C
Confidence 345566689999999999987 89999999999999999999999999999999999999988765 6777764 7
Q ss_pred ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCCCeEEEEE
Q 020021 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVA 179 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 179 (332)
+.|.+|+...=..++++++|++.|+.++++|.++.-+|.+.|+.++.||+-.++......+...+ .+.+.+.|..|.++
T Consensus 107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence 89999999998999999999999999999999999999999999999999888776666655443 46778889888888
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 259 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (332)
.-+.|-+|.+..-.. +..-..+..+.++.|- ++.++++|..|+.|.+||..+..++..+. .|.+.|-.+.+
T Consensus 187 ~~~~i~i~q~d~A~v-----~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~---AH~~RVK~i~~ 257 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASV-----FREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL---AHENRVKDIAS 257 (362)
T ss_pred eccEEEEEecccHhH-----hhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee---cchhheeeeEE
Confidence 888999998754211 0000011123344443 56788999999999999998877777766 45677766652
Q ss_pred --CCCCCEEEEEcCCCcEEEEECCCC-----ceEEEecCCCCCCceEEe
Q 020021 260 --SPEGMFVISGSGDGSVYAWSVRSG-----KEVASWMSFDTEPPVIKW 301 (332)
Q Consensus 260 --spdg~~l~sgs~Dg~i~vWd~~~~-----~~~~~~~~~~~~v~~l~~ 301 (332)
.|++.||+|+|.||.|+|||+... +.+..... +.+++|+..
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred EecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 578899999999999999999765 22333322 445666654
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=200.93 Aligned_cols=237 Identities=21% Similarity=0.332 Sum_probs=198.0
Q ss_pred EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE--EeecccccEEEEEecC-CCCeEEEeeCCCcEE
Q 020021 70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCS-SKDCFISGSLDRTVL 146 (332)
Q Consensus 70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~--~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~ 146 (332)
+.+.+|...+.+++|..+|..++.++. |.++++|+++.....+ ..++|.+.|-.++|+| +.+.|++++.|++|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~---dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSF---DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeeccc---CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 345677788999999999999999876 8899999998875544 3578999999999987 677999999999999
Q ss_pred EEeCCCceEEEEEEecC-ceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE
Q 020021 147 LWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT 224 (332)
Q Consensus 147 iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~ 224 (332)
+||++.++|...+...+ .....+.|++.+++++ .|..|...|.|+.+.... ......++.++++.++.+++..
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-----~~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-----EQFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-----hcccceeeeeeecCCCCEEEEe
Confidence 99999999988776554 4456778877666655 588999999987643211 1122356788999999999999
Q ss_pred cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021 225 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304 (332)
Q Consensus 225 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~ 304 (332)
+..|+|.|.....-++++.+.. |...+.++.|+|+|+|+|+||+|..+.+||+...-++..+..+.-+|..|+||.|
T Consensus 166 ~GlG~v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred cCCceEEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 9999999999888888877764 4567789999999999999999999999999988888999999999999999999
Q ss_pred eeEEEeccceEEE
Q 020021 305 SLMFVTGSSELSF 317 (332)
Q Consensus 305 ~~~l~t~~~d~~~ 317 (332)
|++|++||+|..+
T Consensus 243 g~~lASaSEDh~I 255 (313)
T KOG1407|consen 243 GRMLASASEDHFI 255 (313)
T ss_pred cceeeccCccceE
Confidence 9999999998444
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=216.50 Aligned_cols=256 Identities=22% Similarity=0.331 Sum_probs=207.4
Q ss_pred eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE
Q 020021 14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY 93 (332)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (332)
+++|+......+++.+|.|-.++|+++.|.+++.++++++.|+.+++|+++.....+++.+|...|+.+.|......++.
T Consensus 199 Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs 278 (459)
T KOG0288|consen 199 IKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS 278 (459)
T ss_pred hhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee
Confidence 46788888788999999999999999999999999999999999999999999999999999999999988877766676
Q ss_pred ecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCC
Q 020021 94 SSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQ 172 (332)
Q Consensus 94 ~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~ 172 (332)
++ .|.++++||+....+.+++- ....+..+..+ ...++||-.|++||+||+++..+.....+.+.. ......+
T Consensus 279 gs---~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~ 352 (459)
T KOG0288|consen 279 GS---ADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMD 352 (459)
T ss_pred cc---ccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccC
Confidence 65 49999999999877766543 22334444444 467899999999999999999887777665543 3444455
Q ss_pred C-eEEEEEeCCEEEEEECccCCCCCeeEEEecCC--CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021 173 G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD--ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 173 ~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
+ .+++++-|+++.+.|+|..+. ...+...+- ..+.+.+.||||++|+++|+.||.|+||++.++++...+....
T Consensus 353 g~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~- 429 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST- 429 (459)
T ss_pred CeEEeeecCCCceeeeecccccE--EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-
Confidence 5 466677799999999997643 223332221 1368899999999999999999999999999999877665432
Q ss_pred CCCcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021 250 SRNSTLEASFSPEGMFVISGSGDGSVYAW 278 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vW 278 (332)
....+++++|+|.|.+|++++.++.+++|
T Consensus 430 s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 430 SNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcceEEEEEcCCCchhhcccCCcceEec
Confidence 22368899999999999999999999999
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.7e-28 Score=208.30 Aligned_cols=273 Identities=19% Similarity=0.282 Sum_probs=232.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
-.|.++...|..+.++||+.|.++.++|-..+..+.++++|...|..+.++++...++.++. |..|++|......+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCc
Confidence 45778888888789999999999999999999999999999999999999999988887765 889999999888888
Q ss_pred EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----CceeEEEcCCCeEEEEEe-CCEEEEEEC
Q 020021 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFAVAF-GGYIRMFDA 189 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~i~vwd~ 189 (332)
.....|..+|+.+..+|.|++|+++|.||++.+-|++++.+....... ......++|++.+|..+. |+.+++||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 888999999999999999999999999999999999999887665442 245778999999888774 899999999
Q ss_pred ccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (332)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg 269 (332)
..... .-...+|.++|..++|+.+|.+++++.+|+.|++||+++.+...++.... ...+..+.|.+.|.||+.+
T Consensus 377 ks~~~----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 377 KSQTN----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CCccc----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--cccceeEEEcCCCCeEEee
Confidence 76432 22345788999999999999999999999999999999887666665322 2357789999999999999
Q ss_pred cCCCcEEEEECCC--CceEEEecCCCCCCceEEeCCCeeEEEeccceEE
Q 020021 270 SGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 316 (332)
Q Consensus 270 s~Dg~i~vWd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~ 316 (332)
+.|=.|++++-.+ ..++..+..|.+..+.+.|....+++++++.|..
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 9886777766433 4457778888888999999999999999999844
No 73
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.3e-28 Score=194.96 Aligned_cols=240 Identities=19% Similarity=0.322 Sum_probs=200.0
Q ss_pred eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEE
Q 020021 69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLW 148 (332)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iW 148 (332)
++.+..++.+|..+.|+-+|++.+++.+ |.++|+|+...+..++++.||-.+|..++.+.|+..|++++.|+.+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGs---drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGS---DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCC---CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 4556677888999999999999988743 9999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEecC--ceeEEEcCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc
Q 020021 149 DQRAEKCQGLLRVQG--RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT 225 (332)
Q Consensus 149 d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~ 225 (332)
|.++++....++.+. .+.+.|.... .++++++|..+|+||.|.....|.+++..+- ..|.++.++ +..|++|+
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--DGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--CceeEEEec--ccEEEeec
Confidence 999999988886653 4556666554 5566678999999999987766666554322 356666664 67899999
Q ss_pred CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC--ceEEeCC
Q 020021 226 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP--PVIKWTP 303 (332)
Q Consensus 226 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v--~~l~~sp 303 (332)
.||+++.||++.|++...+. ..+++++.||+|++..+.++.|+++++-|-.+|+.+....+|...- ...+++.
T Consensus 163 ~DGtvRtydiR~G~l~sDy~-----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYF-----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred cCCcEEEEEeecceeehhhc-----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence 99999999999998765553 3567899999999999999999999999999999999998887543 3355777
Q ss_pred CeeEEEeccce--EEEecc
Q 020021 304 GSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 304 ~~~~l~t~~~d--~~~w~~ 320 (332)
...++++|++| +.+|+.
T Consensus 238 sdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cceeEEeccCCceEEEEEe
Confidence 78899999999 666654
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=204.19 Aligned_cols=248 Identities=21% Similarity=0.348 Sum_probs=201.1
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC------------------CeeeEEeeecccceeEEEEccCC
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSHP 88 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~ 88 (332)
.+.+..|.+++.+.+|+|||.++||||.|.+|+|.|++. -..++++..|...|..+.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 356889999999999999999999999999999999861 13467788888899999999998
Q ss_pred CEEEEecCCCCCceeEEEEccCCceEEEee--cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee
Q 020021 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 166 (332)
Q Consensus 89 ~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~ 166 (332)
..+++++. |++|+++|......-+.++ .-..+|.++.|+|.|.+|+.|..--+++++|+++-+|...-
T Consensus 185 ~ILiS~sr---D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa------- 254 (430)
T KOG0640|consen 185 TILISGSR---DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA------- 254 (430)
T ss_pred heEEeccC---CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-------
Confidence 88887765 8999999985433222221 24568999999999999999999999999999876653110
Q ss_pred EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021 167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (332)
+...+|...++.+.+|+.|++.++++.||.|++||-.+++++.++..
T Consensus 255 ---------------------------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~ 301 (430)
T KOG0640|consen 255 ---------------------------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN 301 (430)
T ss_pred ---------------------------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence 01123556789999999999999999999999999999988877753
Q ss_pred cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec------------------------------------
Q 020021 247 KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM------------------------------------ 290 (332)
Q Consensus 247 ~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~------------------------------------ 290 (332)
. +....+.+..|+.+|+|+++.+.|..+++|.+.+++++....
T Consensus 302 A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 302 A-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred h-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence 2 334567788899999999999999999999999988765542
Q ss_pred -------------CCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021 291 -------------SFDTEPPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 291 -------------~~~~~v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
+|++.+.++.-||.+-.|+|++.| .++|
T Consensus 381 daRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 381 DARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred cccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 577777778889999999999998 5555
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=212.34 Aligned_cols=270 Identities=20% Similarity=0.233 Sum_probs=213.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~ 113 (332)
..+|++|+|+|..++=+.......+-||+..+...++++......+..++|..+|..++++. ..+.|+++|+++...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD---~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD---ESGHVKVFDMKSRVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC---CcCcEEEeccccHHH
Confidence 35899999999876533333347799999998888888888888899999999998777664 367899999888777
Q ss_pred EEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcC--CCeEEEEEeCCEEEEEE
Q 020021 114 LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDD--QGLVFAVAFGGYIRMFD 188 (332)
Q Consensus 114 ~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~i~vwd 188 (332)
++.+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+.+......+..+. .-+..+.+ +..++++++||+||+||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 8889999999999999994 5688999999999999998876433333222 22333333 34688888999999999
Q ss_pred CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (332)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s 268 (332)
+|.... +...+ .|..+|..+.+-|.|+.+++++.+ .|++||+.+|..+-... ..|...++++.+..++.-|+|
T Consensus 183 tR~~~~-~v~el---nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 183 TRSLTS-RVVEL---NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred eccCCc-eeEEe---cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhh--hcccceEEEEEeecCCceEee
Confidence 997542 22222 234578899999999999887654 89999999665432221 137789999999999999999
Q ss_pred EcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 269 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 269 gs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
||.|+.+++||+.+-+.++.+ ..+++|.+++.+||++.++.|-++
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred cccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEeccc
Confidence 999999999999888877776 467899999999999999988776
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=211.71 Aligned_cols=242 Identities=20% Similarity=0.365 Sum_probs=202.2
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEE
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d 107 (332)
.|.-|..+|.|++||.|..+||||+.||.|++|.+.+|.|++.+. +|..+|.++.|+.++..+++++ .|.++|+.-
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s---fD~tvRiHG 334 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS---FDQTVRIHG 334 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc---ccceEEEec
Confidence 355678999999999999999999999999999999999999987 7899999999999999998875 499999999
Q ss_pred ccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc----eeEEEcC--CCeEEEEEeC
Q 020021 108 LHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----PAAAYDD--QGLVFAVAFG 181 (332)
Q Consensus 108 ~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~ 181 (332)
+++|++++.++||...|+.+.|.++|.+++|+|.||+|++|+.++..|..+++..+. +.+..-| +..++.+-..
T Consensus 335 lKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 335 LKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred cccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence 999999999999999999999999999999999999999999999999988875432 1222222 3345555567
Q ss_pred CEEEEEECccCCCCCeeEEEecCC-CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s 260 (332)
+++.+.++.-. ....++.+.. ..+..+++.||.|..+.+.+.|+.++.|...+|++.+++. .|..-++.++-+
T Consensus 415 ntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---VhEkdvIGl~HH 488 (508)
T KOG0275|consen 415 NTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VHEKDVIGLTHH 488 (508)
T ss_pred CeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cccccccccccC
Confidence 88888876421 1111111111 1356778999999999999999999999999999988776 566778888999
Q ss_pred CCCCEEEEEcCCCcEEEEE
Q 020021 261 PEGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd 279 (332)
|-.+.||+-++||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 9999999999999999994
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-27 Score=203.53 Aligned_cols=250 Identities=22% Similarity=0.286 Sum_probs=202.3
Q ss_pred cccceeEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCee----eEEeeecccceeEEEEccCCCEEEEec
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSS---SYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg---~~l~tgs~D~tv~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~s 95 (332)
+.+..+++.||+++|.++++...+ ..++++|.|.++++|-.+.++. ++.-.+|...|.++...+++..+++++
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 467788999999999988874322 3599999999999998876653 233458999999999999999888775
Q ss_pred CCCCCceeEEEEccC-------------------------CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021 96 KNGWDESLRLLSLHD-------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 150 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~-------------------------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~ 150 (332)
||.++++|+.++ +.++-++.||+.+|.++.|++ ...+.|+|+|.+|+.||+
T Consensus 213 ---~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 213 ---WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred ---ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence 699999999321 124667899999999999998 778999999999999999
Q ss_pred CCceEEEEEEecC-ceeEEEcCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCC
Q 020021 151 RAEKCQGLLRVQG-RPAAAYDDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTME 227 (332)
Q Consensus 151 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~d 227 (332)
.++.+...+..+. ..+..+.+.. .+++++.|..||+||-|.. .+....+++.+|.+-|.++.++|... .+++++.|
T Consensus 289 etg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 289 ETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred ecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC-CCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence 9999887776543 3345555544 4555667899999999986 45666778889999999999999875 56788999
Q ss_pred CeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021 228 GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 228 g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
+++++||+++.. ++..+. .|...+.++.|+ ++.+++|||.|.+|+|+.-.
T Consensus 368 ~t~klWDvRS~k~plydI~---~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAPLYDIA---GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CeEEEEEeccCCCcceeec---cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999877 666665 467888899994 56799999999999998653
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.4e-28 Score=211.22 Aligned_cols=250 Identities=18% Similarity=0.299 Sum_probs=205.8
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
....++|....+.|.+++|-.||.+||.|...|-|+|+|..+...+..+.+|+.++..+.|+|....++..+++ |..+
T Consensus 58 ~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~ 135 (487)
T KOG0310|consen 58 RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVV 135 (487)
T ss_pred hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceE
Confidence 34456677788999999999999999999999999999977766788899999999999999999888776543 7889
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCce-EEEEEEe-cCceeEEEcCCCeEEEEEe
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEK-CQGLLRV-QGRPAAAYDDQGLVFAVAF 180 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 180 (332)
++||+.+...+..+.+|++.|.+.+++|.. ..++|||+||+||+||.+... ..-.+.. .......+-+++..++.+.
T Consensus 136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC
Confidence 999999988777899999999999999954 489999999999999998763 3333322 1233556667888888889
Q ss_pred CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s 260 (332)
++.+++||+..... .......|...|+++++..+++.|++++.|+++++||..+.+.++.+.. .+++.+++.+
T Consensus 216 Gn~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~pvLsiavs 288 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PGPVLSIAVS 288 (487)
T ss_pred CCeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----ccceeeEEec
Confidence 99999999875432 1222333667899999999999999999999999999888888887763 4789999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCC
Q 020021 261 PEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
||++.++.|-.||.+-+=+...
T Consensus 289 ~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred CCCceEEEecccceeeeehhhc
Confidence 9999999999999887765433
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=185.87 Aligned_cols=250 Identities=20% Similarity=0.358 Sum_probs=197.8
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-----EEeeecccceeEEEEccCCC---EEEEecCCCCCc
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDE 101 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~ 101 (332)
-+.|.++|.|.+|||+|.+|+||+.|++|++--++...|. -.+..|...|..++|..++. .++.++..| |.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag-dc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG-DC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-cc
Confidence 4679999999999999999999999999999877644432 24667888899999976554 344443333 78
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (332)
.|.+-|-.+|+.++.+.||++.|.++- +=++.+|+|||+|.+||+||++-+.|+.++..... .
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~------~---------- 226 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH------D---------- 226 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCccc------C----------
Confidence 888889999999999999999999873 33578999999999999999988777654421100 0
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp 261 (332)
+ +-..+.|.+++..|.|+++++|-.|....+||++.+..++.+. -|...+.++.|||
T Consensus 227 -------------~-------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp 283 (350)
T KOG0641|consen 227 -------------G-------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSP 283 (350)
T ss_pred -------------C-------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCC
Confidence 0 0112467889999999999999999999999999999988875 3567888999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCC----ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 262 EGMFVISGSGDGSVYAWSVRSG----KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
...|++++|.|..|++=|++-. -.+.....|...+-.+.|+|..-.|++.+.| +++|..
T Consensus 284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9999999999999999998632 1122335677778889999999888888777 778864
No 80
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=208.13 Aligned_cols=288 Identities=16% Similarity=0.268 Sum_probs=219.2
Q ss_pred cceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 25 EVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.++..|.||.+.|.+++=+|.. ..+|||+.||.|+|||+.+.+|+.++..|...|..+++.. ..+++++ .|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg---dDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG---DDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec---CCcce
Confidence 4556789999999999999977 7799999999999999999999999999999999999887 4555553 48999
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCC-CeEEE-EE
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQ-GLVFA-VA 179 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~-~~ 179 (332)
+.|-++. .+++++.+ ...+.+++-+..+..|+|+|. .|-|||.+-..++..+... ...+..+.+- ..+++ ++
T Consensus 132 K~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred eeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 9999866 35666654 345677777777889999987 5899998777666655433 2345555553 23444 44
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 259 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (332)
.|+.|.+||+|.... +....+. ..-+.++|+|.+-.+++++.|-.++.+|++..+ ..+..+..|.+.+..|+|
T Consensus 208 sDrsIvLyD~R~~~P--l~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASP--LKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred cCCceEEEecccCCc--cceeeee---ccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEecc
Confidence 799999999997543 3222221 235779999999999999999999999987533 233334467788999999
Q ss_pred CCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccce--EEEecc-cccccccc
Q 020021 260 SPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP-DLSKLGAY 328 (332)
Q Consensus 260 spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~-~~~~~~~~ 328 (332)
||.|+.++|||.|++||||.+..+..-... +.--+.|.++.||-|.+++++||.| +++|-. .-.+||.+
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 999999999999999999999765432111 1112468999999999999999998 888854 33355544
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=208.34 Aligned_cols=248 Identities=21% Similarity=0.320 Sum_probs=194.7
Q ss_pred cHHHHhc-ccceeEe-ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEe
Q 020021 17 SEEILQS-MEVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS 94 (332)
Q Consensus 17 ~~~~~~~-~~~~~~l-~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 94 (332)
++|++++ ....+.= ++|.+.|.+++.|+||+|||||+.|.-|.|||..+.+.++++.+|...|..++|......++++
T Consensus 183 ~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 183 RDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred cchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee
Confidence 4466663 2222222 4999999999999999999999999999999999999999999999999999999998888887
Q ss_pred cCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCe
Q 020021 95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 174 (332)
Q Consensus 95 s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (332)
+. |.++++|+++...++.++-||++.|.+++...-.+.+-.|+.|+++++|++.....+ .+.
T Consensus 263 s~---Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr-------------- 324 (479)
T KOG0299|consen 263 SA---DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR-------------- 324 (479)
T ss_pred ec---CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eee--------------
Confidence 64 899999999999999999999999999998877766666669999999998432211 111
Q ss_pred EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec-CCCC--
Q 020021 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSR-- 251 (332)
Q Consensus 175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~-- 251 (332)
++...+.+++|=.+ ..+++|+++|.|.+|++.+.+++.+.... +...
T Consensus 325 -----------------------------g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 325 -----------------------------GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred -----------------------------CCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCc
Confidence 11123455666433 45789999999999998887777665432 1111
Q ss_pred ------CcceEEEECCCCCEEEEEcCCCcEEEEECCCCc----eEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 252 ------NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK----EVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 252 ------~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.++++++..|...++|+||.+|+|++|-+.++- .+..+. ..+.|+.|+|+++|+.+++|-.
T Consensus 375 ~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence 277889999999999999999999999998872 233333 6778999999999986665543
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.2e-26 Score=212.72 Aligned_cols=276 Identities=20% Similarity=0.293 Sum_probs=228.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
.+|+++.-+|+..+||.|-.||.|+||+..+.+.+-++.+|..+|+.+.|...|..+++++. |+.|-+||+-...-+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGsk---Dt~IIvwDlV~E~Gl 142 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSK---DTDIIVWDLVGEEGL 142 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCC---CccEEEEEeccceee
Confidence 58999998999999999999999999999999999999999999999999999999998865 889999999877778
Q ss_pred EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFAVAFGGYIRMFDARKY 192 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~vwd~~~~ 192 (332)
..++||++.|+..-|..+.++++|.|.|+.|++||++++.|..+...+... ..++.+ ...++++.|+.+++|++...
T Consensus 143 ~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 143 FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEEEeecc
Confidence 899999999999999988899999999999999999999997665433222 223333 45566666777777766000
Q ss_pred -------------------------------------------------------------------------C------
Q 020021 193 -------------------------------------------------------------------------E------ 193 (332)
Q Consensus 193 -------------------------------------------------------------------------~------ 193 (332)
.
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 0
Q ss_pred -------------------------------CCC----------------------------eeEEEecCCCCCceeEEE
Q 020021 194 -------------------------------KGP----------------------------FDIFSVGGDISDANVVKF 214 (332)
Q Consensus 194 -------------------------------~~~----------------------------~~~~~~~~~~~~v~~v~~ 214 (332)
... ...+...||.++|+++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 000 001334567788899999
Q ss_pred cCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC
Q 020021 215 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT 294 (332)
Q Consensus 215 s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~ 294 (332)
|.|...++++ ..+.+++|+..+.+++.++. .+.+.+..|-|.++++++|...|.+.++|+.....+.+..+|.+
T Consensus 382 S~d~~~~~Sg-a~~SikiWn~~t~kciRTi~-----~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 382 SSDSILLASG-AGESIKIWNRDTLKCIRTIT-----CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred ecCceeeeec-CCCcEEEEEccCcceeEEec-----cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 9887665554 56689999999999988775 34666788999999999999999999999999999999999999
Q ss_pred CCceEEeCCCeeEEEeccce--EEEecc
Q 020021 295 EPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 295 ~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
.++.++.+||++.++|||.| +++|+-
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDF 483 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeE
Confidence 99999999999999999998 888864
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-27 Score=192.08 Aligned_cols=274 Identities=20% Similarity=0.279 Sum_probs=205.1
Q ss_pred EEEEECCC--CCEE-EEEe-----CCCcEEEEEcCCCeeeEEeeec--ccceeEEEEccCCCEEEEecCCCCCceeEEEE
Q 020021 38 SSMDFHKS--SSYL-VTAS-----DDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 107 (332)
Q Consensus 38 ~~i~~s~d--g~~l-~tgs-----~D~tv~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d 107 (332)
.++.|||= +++. ||+. ..|++.|-|+....-+...... ......++|++....+++++. | |+++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~-G-DGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS-G-DGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe-c-CceEEEec
Confidence 46788873 3332 3332 3578999998755555554432 356788999998887766654 3 89999999
Q ss_pred ccC-CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcC--CCeEEEEEeC
Q 020021 108 LHD-NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD--QGLVFAVAFG 181 (332)
Q Consensus 108 ~~~-~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~ 181 (332)
+.- ..++..++.|+.+|.+++|++ .++.++++|+|++||+||...++.+.++..+.. -.+.++| ++.+.+++.|
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 643 558999999999999999998 566888999999999999988887777765432 2344554 4566667789
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEE
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASF 259 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~ 259 (332)
+++++||+|.. ++... ...|...+.++.++. +..++++++.|+.|++||++.-+ ++.++. .|.-.|.++.|
T Consensus 170 ~~l~lwdvr~~--gk~~~--i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~ 242 (311)
T KOG0277|consen 170 GTLRLWDVRSP--GKFMS--IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKF 242 (311)
T ss_pred ceEEEEEecCC--CceeE--EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec---CCceEEEEEec
Confidence 99999999864 33333 334556788888886 55788899999999999998644 334443 56778889999
Q ss_pred CCC-CCEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCC-CeeEEEeccce--EEEecc
Q 020021 260 SPE-GMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTP-GSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 260 spd-g~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp-~~~~l~t~~~d--~~~w~~ 320 (332)
||- ...|||+|.|-++||||...+. .+.+...|+..+-.+.||+ +..++++.+=| +.+|+|
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 995 5789999999999999997543 4566677888888889988 45688888766 777876
No 84
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.3e-26 Score=214.09 Aligned_cols=225 Identities=14% Similarity=0.229 Sum_probs=169.8
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccC-CCEEEEecCCCCCceeEEEEccCCc--------eEEEeeccc
Q 020021 51 TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YLRYFKGHH 121 (332)
Q Consensus 51 tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~s~~g~d~~v~v~d~~~~~--------~~~~~~~h~ 121 (332)
+|+.++.+++|+......+..+.+|...|..++|+|+ +..+++++ .|++|++||+.++. ++..+.+|.
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCCCccccccccceEEeecCC
Confidence 3778899999999888888889999999999999997 56666665 48999999997542 345688999
Q ss_pred ccEEEEEecCCCCe-EEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEE
Q 020021 122 DRVVSLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200 (332)
Q Consensus 122 ~~V~~v~~~~~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~ 200 (332)
..|.+++|+|++.. |+|++.|++|++||+++++....+.
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---------------------------------------- 165 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---------------------------------------- 165 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----------------------------------------
Confidence 99999999998875 5799999999999998765321110
Q ss_pred EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC--CcceEEEECCCCCEEEEEcCCC----c
Q 020021 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDG----S 274 (332)
Q Consensus 201 ~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~v~~spdg~~l~sgs~Dg----~ 274 (332)
+...+.+++|+|+|+++++++.|+.|++||+++++.+.++..+.... ..++...|++++.+|+|++.|+ .
T Consensus 166 ----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~ 241 (568)
T PTZ00420 166 ----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE 241 (568)
T ss_pred ----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence 11246789999999999999999999999999999887776432211 1122345679999999988775 7
Q ss_pred EEEEECCC-CceEEEecCCCCCCceE---EeCCCeeEEEeccce--EEEeccccc
Q 020021 275 VYAWSVRS-GKEVASWMSFDTEPPVI---KWTPGSLMFVTGSSE--LSFWIPDLS 323 (332)
Q Consensus 275 i~vWd~~~-~~~~~~~~~~~~~v~~l---~~sp~~~~l~t~~~d--~~~w~~~~~ 323 (332)
|+|||+.+ .+.+..+..+. ....| -..+++.++++|++| +++|++...
T Consensus 242 VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 242 MKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 99999985 45555443222 23332 234568889998777 888887544
No 85
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=6.2e-26 Score=211.73 Aligned_cols=241 Identities=14% Similarity=0.198 Sum_probs=182.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-------------EEeeecccceeEEEEcc-CCCEEEEecCCCCC
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWD 100 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~~~s~~g~d 100 (332)
..|....+++|+..+++++.+.....|+...+..+ ..+.+|...|..++|+| ++..+++++. |
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---D 97 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE---D 97 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---C
Confidence 44566667788788889999999999987654332 13567888899999999 6667777653 8
Q ss_pred ceeEEEEccCC-------ceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCC
Q 020021 101 ESLRLLSLHDN-------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 172 (332)
Q Consensus 101 ~~v~v~d~~~~-------~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 172 (332)
++|++||+..+ ..+..+.+|...|.+++|+|++ +.|+|++.|++|++||+++++....+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l------------- 164 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI------------- 164 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-------------
Confidence 99999999764 3567899999999999999975 69999999999999999876543221
Q ss_pred CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021 173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (332)
Q Consensus 173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (332)
.+|...+.+++|+|+|.++++++.|+.|++||+++++.+..+..+. ..
T Consensus 165 ------------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~--~~ 212 (493)
T PTZ00421 165 ------------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--SA 212 (493)
T ss_pred ------------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC--CC
Confidence 1233467889999999999999999999999999998877665321 22
Q ss_pred cceEEEECCCCCEEEEEc----CCCcEEEEECCCCce-EEEecCC-CCCCceEEeCCCeeEEEeccc-e--EEEeccccc
Q 020021 253 STLEASFSPEGMFVISGS----GDGSVYAWSVRSGKE-VASWMSF-DTEPPVIKWTPGSLMFVTGSS-E--LSFWIPDLS 323 (332)
Q Consensus 253 ~~~~v~~spdg~~l~sgs----~Dg~i~vWd~~~~~~-~~~~~~~-~~~v~~l~~sp~~~~l~t~~~-d--~~~w~~~~~ 323 (332)
....+.|.|++..+++++ .|+.|++||+.+... +.....+ ...+....|+|++++|++++. | +++|+....
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 334678999988888764 479999999987543 3333222 234455678999998887763 5 788876543
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.4e-26 Score=218.69 Aligned_cols=292 Identities=16% Similarity=0.252 Sum_probs=221.1
Q ss_pred eccC-CCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCC------------CeeeEEeeecccceeEEEEccCCCEEEEe
Q 020021 30 FRDY-NGRISSMDFHKSSSYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYS 94 (332)
Q Consensus 30 l~~h-~~~I~~i~~s~dg~~l~tgs--~D~tv~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 94 (332)
+.+| +..|++|+.+|||..++||+ .|+.++||+.+. .+.+.+...|...|.++.|+++|.++++|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 4444 46699999999999999999 999999998753 23455677888899999999999999998
Q ss_pred cCCCCCceeEEEEccC-------C-----------ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE
Q 020021 95 SKNGWDESLRLLSLHD-------N-----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156 (332)
Q Consensus 95 s~~g~d~~v~v~d~~~-------~-----------~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~ 156 (332)
+. |..|.+|.... + ++...+.+|...|..+.|+|++.+|||+|.|++|.+||.++-++.
T Consensus 88 SD---D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 88 SD---DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred cC---cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence 75 77899998762 1 146789999999999999999999999999999999999988777
Q ss_pred EEEEecC--ceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCe--eEEEecCCCCCceeEEEcCCCCEEEEEc-CC---
Q 020021 157 GLLRVQG--RPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPF--DIFSVGGDISDANVVKFSNDGRLMLLTT-ME--- 227 (332)
Q Consensus 157 ~~~~~~~--~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~d--- 227 (332)
..++.+. .-...++|-|+++++- .|++|++|.+......+. ..+...+-..-...+.+||||.+|++.- .+
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 7776543 3467889999888766 478999999654322110 0111111123456788999999998752 23
Q ss_pred CeEEEEEccCCeEeEEeeecCCCCCcceEEEECC-----CCC------------EEEEEcCCCcEEEEECCCCceEEEe-
Q 020021 228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-----EGM------------FVISGSGDGSVYAWSVRSGKEVASW- 289 (332)
Q Consensus 228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp-----dg~------------~l~sgs~Dg~i~vWd~~~~~~~~~~- 289 (332)
.++.|++..+.+.-..+- +|..++..+.|+| ... .+|+||.|++|.||.....+++...
T Consensus 245 ~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~ 321 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH 321 (942)
T ss_pred ceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence 368888876655544554 5667888899998 111 6889999999999998766664432
Q ss_pred cCCCCCCceEEeCCCeeEEEeccce--EEEeccccccccc
Q 020021 290 MSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGA 327 (332)
Q Consensus 290 ~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~~ 327 (332)
.-++..|.+++|+|||..|..+|.| +.+...+...||+
T Consensus 322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 2345789999999999888777777 6666666666665
No 87
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.6e-26 Score=185.41 Aligned_cols=245 Identities=15% Similarity=0.257 Sum_probs=188.7
Q ss_pred ccceeEe-ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 24 MEVGMSF-RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 24 ~~~~~~l-~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
..+.-.| .+|+..|.+++|+|.|++|++||.|.++-||.-. ..+|+.++++|...|.+++|+++|.+++.++. |
T Consensus 50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR---D 126 (312)
T KOG0645|consen 50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR---D 126 (312)
T ss_pred EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC---C
Confidence 4444445 3799999999999999999999999999999876 35789999999999999999999999999875 8
Q ss_pred ceeEEEEccCC---ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-Cce--EEEEEEecC--ceeEEEcCC
Q 020021 101 ESLRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEK--CQGLLRVQG--RPAAAYDDQ 172 (332)
Q Consensus 101 ~~v~v~d~~~~---~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~--~~~~~~~~~--~~~~~~~~~ 172 (332)
..|=+|.+..+ .+...|++|+..|..+.|+|....|+|+|+|.+||+|+-. .+. |..++..+. .-...|++.
T Consensus 127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC
Confidence 89999988643 3577899999999999999999999999999999999865 332 333443332 335577786
Q ss_pred C-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe----eec
Q 020021 173 G-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVK 247 (332)
Q Consensus 173 ~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~ 247 (332)
+ ++.+++.|+++++|-....-. ..+...+..+.+. .-.|++++.|+.|++|.....-....+ ...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~~~--------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~ 276 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTDLS--------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKE 276 (312)
T ss_pred CceEEEecCCcceEeeeeccCcc--------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhh
Confidence 6 566677789999997542110 0122345556666 456899999999999986542111111 122
Q ss_pred CCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECC
Q 020021 248 PVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 248 ~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~ 281 (332)
..|...++.+.|.|. ...|++||.||.|++|.+.
T Consensus 277 ~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 277 GAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 346678889999995 7899999999999999874
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-26 Score=207.78 Aligned_cols=238 Identities=16% Similarity=0.254 Sum_probs=198.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~ 109 (332)
.-++..|+++.|+++|.+|+.|-.+|+|.|||....+.+.++.. |...|.+++|. ...+.+++ .|+.|..+|+.
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs---r~~~I~~~dvR 288 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS---RDGKILNHDVR 288 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec---CCCcEEEEEEe
Confidence 33488999999999999999999999999999999999999988 88889999998 33445454 37899999998
Q ss_pred CCceEEE-eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021 110 DNKYLRY-FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 188 (332)
Q Consensus 110 ~~~~~~~-~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd 188 (332)
..+.... +++|...|-++.|++|+++||||+.|..+.|||.....+..
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~------------------------------- 337 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF------------------------------- 337 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-------------------------------
Confidence 7665444 89999999999999999999999999999999984433221
Q ss_pred CccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEE--cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (332)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~ 265 (332)
.+..|.+.|.+++|+|-. .+||+| +.|++|++||..+|+.+.... ...-|..+.|++..+.
T Consensus 338 ------------~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 338 ------------TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKE 401 (484)
T ss_pred ------------EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCE
Confidence 112355678888999844 566665 579999999999999887664 2356778999999988
Q ss_pred EEEE--cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 266 VISG--SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 266 l~sg--s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
|+++ -.+..|.||++.+-+.+..+.+|...|..++++|||..+++|+.| +++|..
T Consensus 402 i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 402 LLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 8876 446689999999999999999999999999999999999999887 888875
No 89
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=191.44 Aligned_cols=286 Identities=17% Similarity=0.232 Sum_probs=219.0
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
+.+++.|.||.+.|..++.....+++.|++.|.+.+||.++++.|+.+|.+|...|.++.|++.+..++.++. |++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~ta 214 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DETA 214 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---Ccch
Confidence 4567778999999999999877789999999999999999999999999999999999999999887777763 5555
Q ss_pred EEEE------ccC----------------------------------CceEEEeecccccEEEEEecCCCCeEEEeeCCC
Q 020021 104 RLLS------LHD----------------------------------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143 (332)
Q Consensus 104 ~v~d------~~~----------------------------------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg 143 (332)
-+|. +.. ..++..|.||.+.|.+++|-..|+.++|+|||+
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 5553 110 113567899999999999999999999999999
Q ss_pred cEEEEeCCCceEEEEEEecCc--eeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE
Q 020021 144 TVLLWDQRAEKCQGLLRVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220 (332)
Q Consensus 144 ~i~iWd~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 220 (332)
+..+||.+++..+..+..+.. .-+.-++ ...+++.+.|-+.|+||+|.. ... .....||...|+++.|.-|.+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-I~s--V~VFQGHtdtVTS~vF~~dd~- 370 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-IQS--VAVFQGHTDTVTSVVFNTDDR- 370 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-cce--eeeecccccceeEEEEecCCc-
Confidence 999999999988776654322 1123334 345666677899999999832 222 223458888999999997765
Q ss_pred EEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-----cCCCC
Q 020021 221 MLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-----MSFDT 294 (332)
Q Consensus 221 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-----~~~~~ 294 (332)
+++++.|.+|++||++... .+.+++. ..++..++.+..+..+|.--+...|++||+. |..+..+ .+|..
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRR 445 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccce
Confidence 7899999999999997643 4555542 3466788998888899998888999999994 5554433 46777
Q ss_pred CCceEEeCC---CeeEEEeccce--EEEecccc
Q 020021 295 EPPVIKWTP---GSLMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 295 ~v~~l~~sp---~~~~l~t~~~d--~~~w~~~~ 322 (332)
-|.|.+|.. -.++ .+++-| +.-|...+
T Consensus 446 MV~c~AW~eehp~cnL-ftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNL-FTCGFDRMVAGWKINT 477 (481)
T ss_pred eeeeeeccccCccccc-ccccccceeeeeEecc
Confidence 789999954 4444 455556 44455443
No 90
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=6.4e-26 Score=206.40 Aligned_cols=279 Identities=17% Similarity=0.237 Sum_probs=213.7
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--EEeeecccceeE-EEEccCCC-EEEEecCCC
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDL-VCFTSHPT-TVIYSSKNG 98 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~~~~-~~~~~s~~g 98 (332)
..++...+.||..-|..+.+.+ +..++++|.|+++++|+-..++-+ +.+.++...+.. +|+.+..+ .++.+ +
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g---~ 78 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG---G 78 (745)
T ss_pred cceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee---c
Confidence 4566678999999999988765 458999999999999998655544 345555555544 77776333 35554 4
Q ss_pred CCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCCeEE
Q 020021 99 WDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVF 176 (332)
Q Consensus 99 ~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 176 (332)
.|.++.+|...+..++.+|+||+..|.+++...++. ++|||||.|+++|-. +++....+.+.. ..+..-+...++
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYV 155 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEE
Confidence 699999999999999999999999999999877776 999999999999964 333333333322 233444666889
Q ss_pred EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256 (332)
Q Consensus 177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 256 (332)
+++.|.+|++|.-... .....+|...|+.+++-+++. +++++.||.|+.|++ +|+.+.++. +|.+.+.+
T Consensus 156 TgsaDKtIklWk~~~~------l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYs 224 (745)
T KOG0301|consen 156 TGSADKTIKLWKGGTL------LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYS 224 (745)
T ss_pred eccCcceeeeccCCch------hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEE
Confidence 9999999999975321 223457888899999998765 689999999999998 677777665 57788889
Q ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce-EEEeccc
Q 020021 257 ASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-LSFWIPD 321 (332)
Q Consensus 257 v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d-~~~w~~~ 321 (332)
++..++++.++|+++|++++||+.. ++...+..-...++++.+-++|..++.+|.. +++|..+
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 9988999999999999999999875 5666555444578999988888776655544 8888655
No 91
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.1e-27 Score=218.83 Aligned_cols=237 Identities=19% Similarity=0.374 Sum_probs=208.8
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
.+..|+..|.++.+-..++.+++|+.|..+-+|......++-.+.+|..+|.++.|++....++.++. +++|++||+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wDl 99 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWDL 99 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeeeh
Confidence 46789999999998777899999999999999999888888889999999999999988877776654 789999999
Q ss_pred cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 188 (332)
Q Consensus 109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd 188 (332)
+.++.+++|.||...+..++|+|-+.++++|+.|..+++||.+...|...+.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---------------------------- 151 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK---------------------------- 151 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec----------------------------
Confidence 9999999999999999999999999999999999999999998655543321
Q ss_pred CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (332)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s 268 (332)
+|...+..+.|+|+|++++.++.|..++|||...|+.+.+|. .|...+..+.|+|..-.+++
T Consensus 152 ---------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 152 ---------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred ---------------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc---cccccccccccCchhhhhcc
Confidence 233346778999999999999999999999999999998887 45567778889999999999
Q ss_pred EcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 269 GSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 269 gs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
||.|+++++||+++-+.+.........|.+++|+|+++.+.+|..+
T Consensus 214 Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999999888888777778889999999999999998765
No 92
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.7e-23 Score=182.31 Aligned_cols=269 Identities=13% Similarity=0.173 Sum_probs=193.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~ 125 (332)
+++++|++.|+++++||+.+++++..+..+. .+..++|++++..++.+. +.++.+++||..+++.+..+..+.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCA--SDSDTIQVIDLATGEVIGTLPSGPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEeccCCCC-cc
Confidence 3578999999999999999999888887554 356789999998775543 2378999999999888777765544 46
Q ss_pred EEEecCCCCeEE-EeeCCCcEEEEeCCCceEEEEEEecC-ceeEEEcCCCeEEEEEeC--CEEEEEECccCCCCCeeEEE
Q 020021 126 SLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFAVAFG--GYIRMFDARKYEKGPFDIFS 201 (332)
Q Consensus 126 ~v~~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~i~vwd~~~~~~~~~~~~~ 201 (332)
.++|+|+++.++ +++.|+.+++||+++.+....+.... .....+++++.+++.+.. ..+.+||.+.... .....
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE
Confidence 789999998664 55678999999998877666554322 234567777766665543 4577788764321 11111
Q ss_pred ecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeEeEEeeecC--CC--CCcceEEEECCCCCEEEEE-cCCCcE
Q 020021 202 VGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKP--VS--RNSTLEASFSPEGMFVISG-SGDGSV 275 (332)
Q Consensus 202 ~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~--~~--~~~~~~v~~spdg~~l~sg-s~Dg~i 275 (332)
. ......++|+|+|+.++++ ..++.|++||+.+++.+..+.... .+ ......++|+||+++++.+ +.++.+
T Consensus 155 ~---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 155 V---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred c---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 1 1234678999999988654 468999999999988776554221 11 1123468899999986544 556789
Q ss_pred EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc---ceEEEecccccc
Q 020021 276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS---SELSFWIPDLSK 324 (332)
Q Consensus 276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~---~d~~~w~~~~~~ 324 (332)
.+||+.+++.+..+. +...+.+++|+|++++|+++. .++.+|+....+
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 999999887765543 445789999999999887653 359999886654
No 93
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=3e-24 Score=175.76 Aligned_cols=235 Identities=15% Similarity=0.217 Sum_probs=194.6
Q ss_pred eeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC
Q 020021 72 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151 (332)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~ 151 (332)
+.+|..+++-+.++.+|..+++++. |.+..||--.+|+.+.++.||++.|++++..-+.+.++||+.|.++++||.+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaK---D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAK---DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccCccccceEEecCCCcEEEEecC---CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 4578888999999999999999876 8899999988999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEecCc-eeEEEcCCCeEEEEEeC------CEEEEEECccCCC---CCeeEEEecCCCCCceeEEEcCCCCEE
Q 020021 152 AEKCQGLLRVQGR-PAAAYDDQGLVFAVAFG------GYIRMFDARKYEK---GPFDIFSVGGDISDANVVKFSNDGRLM 221 (332)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~i~vwd~~~~~~---~~~~~~~~~~~~~~v~~v~~s~dg~~l 221 (332)
+++++..+..+.. -.+.++.++.++..+.| +.|.++|++.... ..-....+..+.+.++.+.++|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999888776542 34567777777776654 5799999985421 111122333344678889999999999
Q ss_pred EEEcCCCeEEEEEccCCeEe-EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEE
Q 020021 222 LLTTMEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK 300 (332)
Q Consensus 222 ~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~ 300 (332)
++|..||.|.+||+++|..+ .... .|...++.+.||||..|++|+|.|.+.++||+.+.+.++++... .++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~---~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDE---EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechh---hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-cccccee
Confidence 99999999999999998554 3323 45668889999999999999999999999999999988888654 5899999
Q ss_pred eCCCeeEEEeccc
Q 020021 301 WTPGSLMFVTGSS 313 (332)
Q Consensus 301 ~sp~~~~l~t~~~ 313 (332)
++|-...++-|++
T Consensus 239 isP~~d~VilgGG 251 (327)
T KOG0643|consen 239 ISPLLDHVILGGG 251 (327)
T ss_pred cccccceEEecCC
Confidence 9998777777654
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.8e-25 Score=184.47 Aligned_cols=254 Identities=17% Similarity=0.283 Sum_probs=200.8
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc------CC------------------------------
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV------TA------------------------------ 65 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~------~~------------------------------ 65 (332)
.+.+...++.||.|.|++|.|++++.+++|++.|++..||.. ..
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 345667788999999999999999999999999999999962 11
Q ss_pred Ce----eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC
Q 020021 66 AT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL 141 (332)
Q Consensus 66 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~ 141 (332)
+. .+..+.+|...|..+.|-..+++++.++ ||.+..+||+++++.+..+.||..+.+.++-+|..+.++|+|.
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS---WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr 334 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS---WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR 334 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcceeeeee---ccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc
Confidence 00 1234566777777777888888888874 7999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCce-EEEEEEecC--ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC
Q 020021 142 DRTVLLWDQRAEK-CQGLLRVQG--RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG 218 (332)
Q Consensus 142 Dg~i~iWd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 218 (332)
|-+.++||++..- ....|+.+. ....+|..+..+++++.|.+|++||++++..+ +..+.. .++++.+++|..+
T Consensus 335 DtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp-lATIRt---dS~~NRvavs~g~ 410 (481)
T KOG0300|consen 335 DTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP-LATIRT---DSPANRVAVSKGH 410 (481)
T ss_pred CceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc-ceeeec---CCccceeEeecCC
Confidence 9999999998432 234555443 34567777888998889999999999987653 333322 2578889999999
Q ss_pred CEEEEEcCCCeEEEEEccCCeEeEEee--ecCCCCCcceEEEECCC--CCEEEEEcCCCcEEEEECCCC
Q 020021 219 RLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSG 283 (332)
Q Consensus 219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~v~~spd--g~~l~sgs~Dg~i~vWd~~~~ 283 (332)
.+|+.--.+..|++||+. |..+..+. ..-+|...+.+++|..+ -.-|++++-|..+.-|.+...
T Consensus 411 ~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 999999999999999986 44333332 12356778888999743 366789999999999998653
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.5e-22 Score=179.02 Aligned_cols=269 Identities=15% Similarity=0.209 Sum_probs=193.8
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
+.+..+.+.+|.. +.++.|+|+++.+ ++++.|++|++||+.+++.+..+..+. .+..+++++++..+++++ +.++
T Consensus 20 t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~--~~~~ 95 (300)
T TIGR03866 20 TLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIAN--EDDN 95 (300)
T ss_pred CCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEc--CCCC
Confidence 4456677776654 5689999999876 677889999999999998877765543 345678999998776654 2378
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-cEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEE-E
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFA-V 178 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~ 178 (332)
.+++||+.+++.+..+..+ ..+.+++|+|+++.+++++.++ .+.+||.++.+.......... ....+++++..+. .
T Consensus 96 ~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred eEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEE
Confidence 9999999988777766532 3468899999999999988875 467789887766544332222 2356677765443 3
Q ss_pred E-eCCEEEEEECccCCCCCeeEEEec--C-C--CCCceeEEEcCCCCEEEE-EcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021 179 A-FGGYIRMFDARKYEKGPFDIFSVG--G-D--ISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPVSR 251 (332)
Q Consensus 179 ~-~~~~i~vwd~~~~~~~~~~~~~~~--~-~--~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 251 (332)
+ .++.|++||++..+. ...+... + + ......++|+|+|+++++ ...++.+.+||..+++.+.... +.
T Consensus 175 ~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~ 248 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VG 248 (300)
T ss_pred cCCCCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eC
Confidence 3 479999999976432 1111111 0 1 112346889999998554 4567789999999888765443 12
Q ss_pred CcceEEEECCCCCEEEEE-cCCCcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021 252 NSTLEASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 303 (332)
Q Consensus 252 ~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp 303 (332)
..+..++|+|+|++|+++ +.++.|++||+.+++.+..+.. ...++.++|+|
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 356789999999999887 5689999999999998888865 45678888876
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3e-24 Score=204.51 Aligned_cols=250 Identities=18% Similarity=0.266 Sum_probs=197.7
Q ss_pred ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC------------------CeeeEEeeecccceeEEEEccC
Q 020021 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSH 87 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~ 87 (332)
..-+...|.+.|+|+.|+|||.+||+||+|+-|.||+... -++...+.+|...|..++|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3455788999999999999999999999999999999772 1256678899999999999999
Q ss_pred CCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc---
Q 020021 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--- 164 (332)
Q Consensus 88 ~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--- 164 (332)
+..+++++ .|++|.+||..+.+.++++++|+..|.++.|.|-|++|+|-+.|++|++|+...=.+...+..+..
T Consensus 141 ~~~lvS~s---~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 141 DSLLVSVS---LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred ccEEEEec---ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 98888775 499999999999999999999999999999999999999999999999999655334444322211
Q ss_pred -----eeEEEcCCCeEEEEEe--C---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC--------C-----C--
Q 020021 165 -----PAAAYDDQGLVFAVAF--G---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND--------G-----R-- 219 (332)
Q Consensus 165 -----~~~~~~~~~~~~~~~~--~---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--------g-----~-- 219 (332)
.-..++|+|.++++.. . ..+.+.+-...+. ...+-||..++.+++|+|- | .
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~----~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV----DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee----eeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 1235578898887663 2 3566665432221 2345578889999999872 1 1
Q ss_pred --EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021 220 --LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 284 (332)
Q Consensus 220 --~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~ 284 (332)
.+|+|+.|+.|-||.....+++-. .+......+..++|||||..|+.+|.||+|.+..++..+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~v--i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFV--IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhh--hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 678899999999999766555432 223456788899999999999999999999999997643
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=183.84 Aligned_cols=247 Identities=17% Similarity=0.265 Sum_probs=198.5
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
...++|+||+..|..+.|+|+...+++++.|..|+||.+....+......|..+|+.+..++.+.++++++. |++.-
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w~ 328 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTWA 328 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceEE
Confidence 344789999999999999999999999999999999999888887788889999999999999999999876 77899
Q ss_pred EEEccCCceEEEeecc--cccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEEe
Q 020021 105 LLSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVAF 180 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h--~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 180 (332)
..|+.++.++.....- .-.+++.+|+|||..|.+|..|+.++|||++++.....|..+. .....|..+|.+++.+.
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 9999998876554432 2348899999999999999999999999998887655554332 23567888898887775
Q ss_pred -CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC--CeEeEEeeecCCCCCcceEE
Q 020021 181 -GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--GTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 181 -~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~v 257 (332)
|+.|++||+|+.+ -+..+.+... ..+.++.|.+.|++++.++.+=+|++++-.+ ...+..+. .|.+....+
T Consensus 409 dd~~V~lwDLRKl~--n~kt~~l~~~-~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~v 482 (506)
T KOG0289|consen 409 DDGSVKLWDLRKLK--NFKTIQLDEK-KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA---DHSGLSTGV 482 (506)
T ss_pred cCCeEEEEEehhhc--ccceeecccc-ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh---hccccccee
Confidence 5679999999765 2444444322 2689999999999999998888888887433 23333332 344566789
Q ss_pred EECCCCCEEEEEcCCCcEEEEEC
Q 020021 258 SFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 258 ~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.|....++++++|.|..++++.+
T Consensus 483 ~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 483 RFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eecccceEEeeccchhheEEeec
Confidence 99999999999999999988764
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=8.1e-25 Score=182.57 Aligned_cols=250 Identities=14% Similarity=0.267 Sum_probs=192.8
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
..+.++|=.|..+|+++.|+|...+|++|+.|++|+++|...-...+.++ ....+|.++.|+|.|.+++.+.. ..
T Consensus 162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd---Hp 238 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD---HP 238 (430)
T ss_pred CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC---CC
Confidence 46789999999999999999999999999999999999997544333332 23346889999999999998864 68
Q ss_pred eeEEEEccCCceEEEe---ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe-cC---ceeEEEcCCCe
Q 020021 102 SLRLLSLHDNKYLRYF---KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-QG---RPAAAYDDQGL 174 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~---~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-~~---~~~~~~~~~~~ 174 (332)
++++||+++-++.... .+|++.|+++.+++.++.-+|||.||.|++||--+++|+.++.- ++ ...+.|..++.
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence 9999999997765443 47999999999999999999999999999999989999877742 22 33456666665
Q ss_pred -EEEEEeCCEEEEEECccCCCCCeeEEEecC---CCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCeEeEEeeecCC
Q 020021 175 -VFAVAFGGYIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 175 -~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~---~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
+++.+.|..+++|.+.+.+ .+..+.-+| .+.--+...|+....+++.-. ..+.+.-||.+++..+..+. .+
T Consensus 319 yiLsSG~DS~vkLWEi~t~R--~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--lg 394 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGR--MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--LG 394 (430)
T ss_pred EEeecCCcceeeeeeecCCc--eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc--cC
Confidence 4556678999999987643 222333222 111223345777666666543 34678889999887665444 36
Q ss_pred CCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
|++.+..+.-||.+.-+++||.|-.+|.|--
T Consensus 395 Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 395 HNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 7788888999999999999999999999964
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=201.66 Aligned_cols=216 Identities=21% Similarity=0.328 Sum_probs=169.5
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC-EEEEecCCCCCce
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDES 102 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~ 102 (332)
-++...|+||.+.|..|+||.+ ++|+|+|.|+|||+|++...+|++.|. |..-|++++|+|-.+ ++++|+ .|+.
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGS---LD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGS---LDGK 433 (712)
T ss_pred ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecc---cccc
Confidence 3455679999999999999985 599999999999999999999999884 666799999999555 566665 4899
Q ss_pred eEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCC
Q 020021 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 182 (332)
Q Consensus 103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (332)
+|+|++...+......-| +-|++++|+|||+..+.|+.+|.+++++....+.....+.....
T Consensus 434 vRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~----------------- 495 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN----------------- 495 (712)
T ss_pred eEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc-----------------
Confidence 999999887776665544 88999999999999999999999999998877654433221100
Q ss_pred EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (332)
Q Consensus 183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp 261 (332)
.+ ...+ ..|+.+.|.|.. ..+++.++|.+|+|+|.+.-.++..|.... ..+.-....|++
T Consensus 496 ---------~K-------k~~~--~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 496 ---------KK-------KKQG--KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFSS 556 (712)
T ss_pred ---------Cc-------cccC--ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEcc
Confidence 00 0001 146677776543 368889999999999998777777776432 223345678999
Q ss_pred CCCEEEEEcCCCcEEEEECC
Q 020021 262 EGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~ 281 (332)
||++|++|++|..|+||++.
T Consensus 557 Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred CCCEEEEeecCceEEEEeCC
Confidence 99999999999999999973
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=175.28 Aligned_cols=254 Identities=13% Similarity=0.164 Sum_probs=188.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeEEeeecccceeEEEEcc--CCCEEEEecCCCCCceeEE
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~v~v 105 (332)
.+|++-|..+..+--|.+|||++.|++|||+.+..+ ..+.++.+|..+|..++|.. .|..+++++ +|+.|.+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---YDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS---YDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee---cCceEEE
Confidence 568888888888888999999999999999999754 45788999999999999876 555565554 5999999
Q ss_pred EEccCCce--EEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021 106 LSLHDNKY--LRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 106 ~d~~~~~~--~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (332)
|.-+++.- ......|...|++++|.|. |-.|+.+|.||+|.+.+++....-...+.
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki-------------------- 144 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI-------------------- 144 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh--------------------
Confidence 99988753 3456789999999999986 45889999999999988765410000000
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC---C-----------CEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND---G-----------RLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 247 (332)
...|...+++++..|. | +.|++++.|..|+||+...++-+.+-. .
T Consensus 145 --------------------~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~-l 203 (299)
T KOG1332|consen 145 --------------------VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT-L 203 (299)
T ss_pred --------------------hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh-h
Confidence 0012223444444443 2 568999999999999988764322111 1
Q ss_pred CCCCCcceEEEECCCC----CEEEEEcCCCcEEEEECCCCc---eEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021 248 PVSRNSTLEASFSPEG----MFVISGSGDGSVYAWSVRSGK---EVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 248 ~~~~~~~~~v~~spdg----~~l~sgs~Dg~i~vWd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
..|...+..+||.|.. .+|||+|.||++.||...... ....+..++..+..++||+.|+.|+.+++| +++|
T Consensus 204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 2577899999999965 689999999999999875321 123345577889999999999998877666 9999
Q ss_pred cccccccccc
Q 020021 319 IPDLSKLGAY 328 (332)
Q Consensus 319 ~~~~~~~~~~ 328 (332)
-.+.++.=+.
T Consensus 284 ke~~~Gkw~~ 293 (299)
T KOG1332|consen 284 KENVDGKWEE 293 (299)
T ss_pred EeCCCCcEEE
Confidence 8777644333
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=8.9e-24 Score=192.57 Aligned_cols=249 Identities=17% Similarity=0.269 Sum_probs=197.9
Q ss_pred eEecHHHHhcccceeEeccCCCcEEE-EEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEE
Q 020021 14 LELSEEILQSMEVGMSFRDYNGRISS-MDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV 91 (332)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~h~~~I~~-i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 91 (332)
.++|+.-.+..--...|.+|.+-|.. ++|.+ |+..|++|+.|+++.+|.+.+.+.+.++.+|...|.+++....+. +
T Consensus 37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~ 115 (745)
T KOG0301|consen 37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-L 115 (745)
T ss_pred eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-e
Confidence 66777766555555668889999988 88875 556799999999999999999999999999998887776666665 5
Q ss_pred EEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEE
Q 020021 92 IYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAY 169 (332)
Q Consensus 92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~ 169 (332)
+++ +||.++++|-.. ++...+++|+..|+++.+-|.+ .++|||.|++||+|.- ++++.++..+. +-..+.
T Consensus 116 iSg---SWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 116 ISG---SWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred Eec---ccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence 554 589999999864 4455699999999999998877 8999999999999964 66676776543 223455
Q ss_pred cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021 170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
-++..+++++.||.|+.|++... .+....+|.+-+.++...+++..+++++.|++++||+.. ++.+.+. .
T Consensus 188 l~~~~flScsNDg~Ir~w~~~ge-----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~---l 257 (745)
T KOG0301|consen 188 LDDSHFLSCSNDGSIRLWDLDGE-----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT---L 257 (745)
T ss_pred ecCCCeEeecCCceEEEEeccCc-----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe---c
Confidence 56778899999999999998421 234556788888999988999999999999999999965 6666665 3
Q ss_pred CCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
+...++++.+-++|.. ++|++||.||||....
T Consensus 258 PttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 258 PTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVDK 289 (745)
T ss_pred CccceEEEEEeeCCCE-EEeccCceEEEEEecc
Confidence 4457888888788776 5688899999998764
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.1e-23 Score=183.78 Aligned_cols=243 Identities=16% Similarity=0.289 Sum_probs=186.7
Q ss_pred ccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe--------ee--EEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021 31 RDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT--------CL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~--------~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~ 99 (332)
.-|.++|+-+.+.|+. .++||++..+.+.|||...-. +. -.+.+|...-..++|++.....+.++ +.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~--~~ 198 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG--SD 198 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec--cC
Confidence 4599999999999987 567888999999999986422 11 25677876566788988777555543 34
Q ss_pred CceeEEEEccCCc-------eEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCc--eEEEEEEecCceeEEE
Q 020021 100 DESLRLLSLHDNK-------YLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAY 169 (332)
Q Consensus 100 d~~v~v~d~~~~~-------~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~~~~~~~~~ 169 (332)
|+++.+||++... ....+.+|.+.|..++|++ +...|++++.|+.+.|||.|++ ++..
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~------------ 266 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH------------ 266 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc------------
Confidence 8899999997533 3567899999999999998 5679999999999999999853 1100
Q ss_pred cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCe-EeEEeeec
Q 020021 170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVK 247 (332)
Q Consensus 170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~ 247 (332)
....|..++++++|+|- +.+||+++.|++|.+||++... .++++.
T Consensus 267 -------------------------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-- 313 (422)
T KOG0264|consen 267 -------------------------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-- 313 (422)
T ss_pred -------------------------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc--
Confidence 11235578899999985 5677889999999999998754 344444
Q ss_pred CCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCC-ce-------------EEEecCCCCCCceEEeCCCee-EEEec
Q 020021 248 PVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSG-KE-------------VASWMSFDTEPPVIKWTPGSL-MFVTG 311 (332)
Q Consensus 248 ~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~-~~-------------~~~~~~~~~~v~~l~~sp~~~-~l~t~ 311 (332)
.|...+..|.|||.. ..|||.+.|+.+.|||+..- +. +..-.+|...|..++|+|+.- .++++
T Consensus 314 -~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 314 -GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV 392 (422)
T ss_pred -CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence 678899999999964 68889999999999999641 11 122357888999999999875 56667
Q ss_pred cce--EEEeccc
Q 020021 312 SSE--LSFWIPD 321 (332)
Q Consensus 312 ~~d--~~~w~~~ 321 (332)
+.| +++|.+.
T Consensus 393 aeDN~LqIW~~s 404 (422)
T KOG0264|consen 393 AEDNILQIWQMA 404 (422)
T ss_pred cCCceEEEeecc
Confidence 777 9999875
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=183.75 Aligned_cols=248 Identities=17% Similarity=0.275 Sum_probs=191.4
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
-+..++|++|.|.|.+|+++. ..++|+|.|++|+.|..+. ..++++.+.. .+..+.-+.....++++ -..|
T Consensus 99 R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s-~~~gIdh~~~~~~FaTc-----Ge~i 169 (433)
T KOG0268|consen 99 RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKS-VYLGIDHHRKNSVFATC-----GEQI 169 (433)
T ss_pred hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeeccc-ccccccccccccccccc-----Ccee
Confidence 445788999999999999986 7889999999999998764 4556654432 23333333333333333 2479
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEEe-
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVAF- 180 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 180 (332)
-+||.+...++..+.--.+.|.++.|+|- ...|++++.|+.|.++|+++..++..+.+..+ +..++.|....|.++.
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc
Confidence 99999999999999999999999999995 45788888999999999999988776655443 3456777666666664
Q ss_pred CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s 260 (332)
|..+..+|+|....+ +. ...+|.+.|..+.|||.|+.+++|+-|.+|+||....++....+..+- -..+.+|.||
T Consensus 250 D~nlY~~DmR~l~~p-~~--v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR--Mq~V~~Vk~S 324 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRP-LN--VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR--MQHVFCVKYS 324 (433)
T ss_pred cccceehhhhhhccc-ch--hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh--hheeeEEEEe
Confidence 788999999986542 22 233577789999999999999999999999999998887665554322 1357789999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCce
Q 020021 261 PEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
.|.+|++|||+|+.||+|.-...+.
T Consensus 325 ~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 325 MDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999999997655443
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=183.62 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=192.1
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-EEe-----------------eecccceeEEEEccCCC
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTI-----------------NSKKYGVDLVCFTSHPT 89 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-~~~-----------------~~~~~~v~~~~~~~~~~ 89 (332)
..++.|+-+|.++.++|++.+.++++.|++|.=|++.++... ..+ ..|...+..++.+++++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 557889999999999999999999999999999999987743 111 13445577899999999
Q ss_pred EEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEE
Q 020021 90 TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY 169 (332)
Q Consensus 90 ~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 169 (332)
+++++ |.|+.|.+|+..+.+.++.+.+|.+.|.+++|-.....++++|.|+++++|++.....+.+
T Consensus 216 ylatg---g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet----------- 281 (479)
T KOG0299|consen 216 YLATG---GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET----------- 281 (479)
T ss_pred EEEec---CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH-----------
Confidence 99986 4589999999999999999999999999999998888999999999999999864432211
Q ss_pred cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021 170 DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 170 ~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
+-+|+..|..+....-++.+-+|+.|+++++|++..-..+ .|. .
T Consensus 282 --------------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifr---g 325 (479)
T KOG0299|consen 282 --------------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFR---G 325 (479)
T ss_pred --------------------------------HhCCccceeeechhcccceEEeccccceeEEEecccccee-eee---C
Confidence 1145555666666667788888889999999998543222 333 2
Q ss_pred CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec-CC-----------CCCCceEEeCCCeeEEEeccce--E
Q 020021 250 SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-SF-----------DTEPPVIKWTPGSLMFVTGSSE--L 315 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~~-----------~~~v~~l~~sp~~~~l~t~~~d--~ 315 (332)
+...+-+++| -+..+++|||+||+|.+|++.+.+++.+.. +| +..|+.|+..|...++++|+.+ +
T Consensus 326 ~~~sidcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~v 404 (479)
T KOG0299|consen 326 GEGSIDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCV 404 (479)
T ss_pred CCCCeeeEEE-ecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCce
Confidence 3445556676 566788999999999999999988876542 22 2267889999999999999876 9
Q ss_pred EEecccc
Q 020021 316 SFWIPDL 322 (332)
Q Consensus 316 ~~w~~~~ 322 (332)
++|-...
T Consensus 405 rLW~i~~ 411 (479)
T KOG0299|consen 405 RLWKIED 411 (479)
T ss_pred EEEEecC
Confidence 9997643
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=183.87 Aligned_cols=224 Identities=19% Similarity=0.288 Sum_probs=176.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc----
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---- 109 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~---- 109 (332)
.++|.++.-+|+|.+|+.|.--+.+.+|.+.+|+.+..+.+|=..|+++.|+.++..+++++. |+.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEEeecc
Confidence 478999999999999998889999999999999999999888888999999999999998876 8899999863
Q ss_pred -----CCceEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCC
Q 020021 110 -----DNKYLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGG 182 (332)
Q Consensus 110 -----~~~~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (332)
+-++++.+.+|+-+|+.+...+. ..+|+|+|.|.++|+||+..+..+..+..+.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------------------- 218 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------------------- 218 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-------------------
Confidence 23578899999999999988764 4599999999999999998887655443322
Q ss_pred EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe-------------EEeeecCC
Q 020021 183 YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-------------STYNVKPV 249 (332)
Q Consensus 183 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~ 249 (332)
.+.+++.+|.++.+.+|+.+|.|.+.++...... ..+....+
T Consensus 219 -------------------------si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 219 -------------------------SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred -------------------------cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 2445555565666666666666655554322100 00111123
Q ss_pred CCC--cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021 250 SRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304 (332)
Q Consensus 250 ~~~--~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~ 304 (332)
|.+ .+++++++-||..|++|++||.++|||+...++++++....++|+-+.+.|=
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 444 8889999999999999999999999999999999888766778888888654
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-22 Score=159.81 Aligned_cols=265 Identities=18% Similarity=0.314 Sum_probs=188.2
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
+.++.+..|... ..|.+++|+|.|.+.+.|+..+++||--..... ..-.+|..++. + .
T Consensus 21 ~~f~~i~~l~ds-qairav~fhp~g~lyavgsnskt~ric~yp~l~--~~r~~hea~~~-------p------------p 78 (350)
T KOG0641|consen 21 KHFEAINILEDS-QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI--DLRHAHEAAKQ-------P------------P 78 (350)
T ss_pred cceEEEEEecch-hheeeEEecCCCceEEeccCCceEEEEcccccc--CcccccccccC-------C------------C
Confidence 456777777643 469999999999999999999999986432111 00012221110 0 0
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-----EEEecCce--eEEE-c---
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRP--AAAY-D--- 170 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-----~~~~~~~~--~~~~-~--- 170 (332)
.|+ .+.-+.|.+.|.+.+|+|+|..++|||+|++|++--++...|.. .+.++.-. ..++ +
T Consensus 79 ~v~---------~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~ 149 (350)
T KOG0641|consen 79 SVL---------CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE 149 (350)
T ss_pred eEE---------eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC
Confidence 111 12345799999999999999999999999999998876655432 22332211 1222 2
Q ss_pred CCCeEEEEEeCC--EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee--
Q 020021 171 DQGLVFAVAFGG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-- 246 (332)
Q Consensus 171 ~~~~~~~~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 246 (332)
..+.+++.+..| .|.+-|.... ..+. .+.+|...+.+ -++-.|-++++|+.|.+|+.||++-...+.++..
T Consensus 150 s~~~il~s~gagdc~iy~tdc~~g--~~~~--a~sghtghila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 150 SGGAILASAGAGDCKIYITDCGRG--QGFH--ALSGHTGHILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred cCceEEEecCCCcceEEEeecCCC--Ccce--eecCCcccEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 234566655544 4555555432 2333 34567666554 3788899999999999999999988777665432
Q ss_pred --cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021 247 --KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 322 (332)
Q Consensus 247 --~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~ 322 (332)
.......+.+++..|.|+.|++|-+|.++.++|+.-++.+..+..|++.|.++.|||...++.|++.|-++..-++
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 2223456788999999999999999999999999999999999999999999999999999999999966554444
No 107
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=189.35 Aligned_cols=283 Identities=18% Similarity=0.301 Sum_probs=196.8
Q ss_pred cCCCcEE--EEEECCC---CCEEEEEeCCCcEEEEEcCCCee------eEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 32 DYNGRIS--SMDFHKS---SSYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 32 ~h~~~I~--~i~~s~d---g~~l~tgs~D~tv~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
.|.-++. +.+|++- ..+|+-+..||.|+++|.....- +.....|...|..+.+.|....++.++ | |
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas--G-D 121 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS--G-D 121 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc--C-C
Confidence 3444444 4777643 35788999999999999864322 345667888899999999444555554 3 8
Q ss_pred ceeEEEEccCCceEEE--eecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEE----------EEEe------
Q 020021 101 ESLRLLSLHDNKYLRY--FKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQG----------LLRV------ 161 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~--~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~----------~~~~------ 161 (332)
.++++||+++++.+.. +.||+..|.+++|.++ ...|++|++||.|.|||++-..... ....
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 9999999999988766 8999999999999994 5689999999999999987433100 0000
Q ss_pred -----------cC------ceeEEEcCCCeEEEEEe-CCEEEEEECccCCC----CCeeEEEecCC---CCCceeEEEcC
Q 020021 162 -----------QG------RPAAAYDDQGLVFAVAF-GGYIRMFDARKYEK----GPFDIFSVGGD---ISDANVVKFSN 216 (332)
Q Consensus 162 -----------~~------~~~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~----~~~~~~~~~~~---~~~v~~v~~s~ 216 (332)
+. +....+.+...+++++. |+.|++||+|.... ++........+ .-.+..+....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 00 11233344555666555 89999999986532 11111111111 12456667777
Q ss_pred CCCEEEEEcCCCeEEEEEccCCeE--eEEeeecCCCCC--cceEEEECCCCCEEEEEcCCCcEEEEECCCCce-EEEecC
Q 020021 217 DGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-VASWMS 291 (332)
Q Consensus 217 dg~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~--~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~-~~~~~~ 291 (332)
.|.++.+...|+.|+.|++.+-.. +..+. ++.+ ....-..+||+.+|++|+.|+..++|.+.+.+. +..+.+
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s---g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFS---GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcCchhhcc---CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC
Confidence 788888888899999999865322 12222 1211 112446899999999999999999999988654 456789
Q ss_pred CCCCCceEEeCCCe-eEEEeccce--EEEecc
Q 020021 292 FDTEPPVIKWTPGS-LMFVTGSSE--LSFWIP 320 (332)
Q Consensus 292 ~~~~v~~l~~sp~~-~~l~t~~~d--~~~w~~ 320 (332)
|.-+|++++|.|.. .-++|++.| +++|..
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 99999999998854 456666777 888876
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=184.80 Aligned_cols=239 Identities=16% Similarity=0.263 Sum_probs=173.1
Q ss_pred EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc----eEEEee-cccccEEEEEecCCCCeEEEeeCCCc
Q 020021 70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRT 144 (332)
Q Consensus 70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~----~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~ 144 (332)
-.+..|...|..+++.|.|..+++++ +|.+|+.||++... ..+.++ .-.+.|+++.|++.|+.++..+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs---~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGS---LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeecc---ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34667777899999999999999874 59999999986532 223333 23457899999999998888888888
Q ss_pred EEEEeCCCceEEE-EEEe----------cC----ceeEEEcC--CCeEEEEEeCCEEEEEECccCCCCCeeEE---EecC
Q 020021 145 VLLWDQRAEKCQG-LLRV----------QG----RPAAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIF---SVGG 204 (332)
Q Consensus 145 i~iWd~~~~~~~~-~~~~----------~~----~~~~~~~~--~~~~~~~~~~~~i~vwd~~~~~~~~~~~~---~~~~ 204 (332)
.++.|- .+.... ..+. .+ ..+.+++| ...+++++.|+++|+||+.+.+. ...++ ..++
T Consensus 238 akl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~~g 315 (641)
T KOG0772|consen 238 AKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPAGG 315 (641)
T ss_pred eeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccCCC
Confidence 999984 333222 2211 11 22445665 45788899999999999976543 22222 2334
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC--CcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 205 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR--NSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 205 ~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
....+..|+|++||+.||+|..||.|++||..+...--.+.....|. ..++++.||+||++|+|-|.|+++++||+..
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 45578999999999999999999999999975433322233322333 3788999999999999999999999999987
Q ss_pred Cc-eEEEecCCC--CCCceEEeCCCeeEEEeccc
Q 020021 283 GK-EVASWMSFD--TEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 283 ~~-~~~~~~~~~--~~v~~l~~sp~~~~l~t~~~ 313 (332)
-+ ++....+.. -+-+..+|||+.++++||.+
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 44 344433322 23467899999999999875
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=8.7e-23 Score=169.41 Aligned_cols=259 Identities=18% Similarity=0.251 Sum_probs=183.9
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC---EEEEecCCCCCceeEEE
Q 020021 31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLL 106 (332)
Q Consensus 31 ~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~s~~g~d~~v~v~ 106 (332)
.+|.-.|.++-|-| |..++.|+|.|.++++||+++.+....+.... .|..-+++|-.. .++.+. .|..|++.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~gt---r~~~VrLC 173 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAGT---RDVQVRLC 173 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEec---CCCcEEEE
Confidence 46778899888865 66789999999999999999887766665433 355555666443 233332 36789999
Q ss_pred EccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCc-eEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 184 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 184 (332)
|+++|.+-++|.||.+.|.++.|+|... .|+|||.||+||+||++.- .|.
T Consensus 174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf---------------------------- 225 (397)
T KOG4283|consen 174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF---------------------------- 225 (397)
T ss_pred eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee----------------------------
Confidence 9999999999999999999999999766 6789999999999998643 222
Q ss_pred EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE---CC
Q 020021 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF---SP 261 (332)
Q Consensus 185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~---sp 261 (332)
++.|..+....+... .-..|...++.++++.||.++++.+.|.++++|+..+|+..-.-..+-.+ +.....++ +.
T Consensus 226 ~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~-n~~~~~~~~~~~~ 303 (397)
T KOG4283|consen 226 RVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH-NQTTSFAVHIQSM 303 (397)
T ss_pred EEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc-cccccceEEEeec
Confidence 222222211112111 01124467899999999999999999999999999888642111111111 11111111 23
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccccc
Q 020021 262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLS 323 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~ 323 (332)
+...+.--=.|+++.+.++-.+..+..+..|-..+.|-.|.|+=+.+-+++.| +..|.|.++
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~ 367 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPALK 367 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccccc
Confidence 33333333456889999999999999999998889999999999999999888 555666543
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-23 Score=189.48 Aligned_cols=247 Identities=21% Similarity=0.334 Sum_probs=197.5
Q ss_pred ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
....+..|++.|+.+...-+++.|+|+|.|.||++|+...+ -|+.++..|...|.+++.......++++ +|.|..|
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS--gGLD~~I 142 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS--GGLDRKI 142 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEe--cCCCccE
Confidence 45668899999999999889999999999999999999876 6888999999999999984433344433 4789999
Q ss_pred EEEEccCCce----------EEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCC
Q 020021 104 RLLSLHDNKY----------LRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 172 (332)
Q Consensus 104 ~v~d~~~~~~----------~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 172 (332)
.+||++++.. ...+. ||...|.+++-++.|..+++|+..+.+++||.++.+.+.
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim--------------- 207 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM--------------- 207 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccccee---------------
Confidence 9999997732 22334 899999999999999999999999999999998765321
Q ss_pred CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021 173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (332)
Q Consensus 173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (332)
.+.||...|..+..++||+.+++++.||+|++||+...+++.++. .|..
T Consensus 208 ----------------------------kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e 256 (735)
T KOG0308|consen 208 ----------------------------KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKE 256 (735)
T ss_pred ----------------------------eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccC
Confidence 223577788999999999999999999999999998888888877 4566
Q ss_pred cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCC--CeeEEEeccceEEEecc
Q 020021 253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP--GSLMFVTGSSELSFWIP 320 (332)
Q Consensus 253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~t~~~d~~~w~~ 320 (332)
.++++..+|+=.++++|+.||.|+.=|+.+......+-.-.++|..+..+. +.-.+.|-.++++.|-.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 799999999999999999999999999988433222222344566666653 33356666677888853
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-21 Score=163.04 Aligned_cols=241 Identities=16% Similarity=0.256 Sum_probs=189.3
Q ss_pred EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC--CCcEEEE
Q 020021 71 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL--DRTVLLW 148 (332)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~--Dg~i~iW 148 (332)
.+......+..+.|+.+|..+++++. |.++++||..++++++++..++-.|-.++|..+...++.++. |.+||+-
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~---dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSE---DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecC---CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34344556899999999999988764 789999999999999999988888999999888888888887 9999999
Q ss_pred eCCCceEEEEEEecCce--eEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc
Q 020021 149 DQRAEKCQGLLRVQGRP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT 225 (332)
Q Consensus 149 d~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~ 225 (332)
++.+++++..+..+... ....+| +..+++++.|++||+||+|..+.. ....+ ..-..++|.|+|-++|++.
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq--g~l~~----~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ--GLLNL----SGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc--eEEec----CCCcceeECCCCcEEEEec
Confidence 99999999999776543 334445 456777888999999999964422 12222 2234689999999999999
Q ss_pred CCCeEEEEEccCC--eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCC---ceEE
Q 020021 226 MEGHIHVLDSFRG--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEP---PVIK 300 (332)
Q Consensus 226 ~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v---~~l~ 300 (332)
..+.|++||++.- .+-.++............+.|||||++++-....+.+++.|--+|..+.++..+...- ...+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 8889999998753 2333444332223455679999999999999999999999999999888886665332 4677
Q ss_pred eCCCeeEEEeccce--EEEecc
Q 020021 301 WTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 301 ~sp~~~~l~t~~~d--~~~w~~ 320 (332)
|+||++.+.++++| +.+|..
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEc
Confidence 99999999999998 666665
No 112
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=5.5e-23 Score=187.41 Aligned_cols=306 Identities=19% Similarity=0.247 Sum_probs=210.5
Q ss_pred cccccceeEecHHHHhc-------ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--E-----Ee
Q 020021 7 EREDKVSLELSEEILQS-------MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--K-----TI 72 (332)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-------~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~-----~~ 72 (332)
++|+++.+..-+++.-. ..+...+.||++.|.++.|+|++..|+|+|.|+++.||......-+ . ..
T Consensus 233 ~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~ 312 (764)
T KOG1063|consen 233 EREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV 312 (764)
T ss_pred ccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecc
Confidence 45555555444333322 2223446799999999999999999999999999999988754222 1 22
Q ss_pred eecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC-c--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021 73 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-K--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149 (332)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~-~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd 149 (332)
.+...+...+-|++++..++.-+ .-+..++|--+.. . ....+.||.+.|+.++|.|.|++|+|+|.|.|-|++-
T Consensus 313 gg~a~GF~g~lw~~n~~~ii~~g---~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 313 GGSAGGFWGGLWSPNSNVIIAHG---RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cccccceeeEEEcCCCCEEEEec---ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence 23334467788999997776543 3567899983221 1 2335679999999999999999999999999999985
Q ss_pred CCCceEE--EEE---EecCc--eeEEEcC-CCeEEEEEeCCEEEEEECccC-----------------------------
Q 020021 150 QRAEKCQ--GLL---RVQGR--PAAAYDD-QGLVFAVAFGGYIRMFDARKY----------------------------- 192 (332)
Q Consensus 150 ~~~~~~~--~~~---~~~~~--~~~~~~~-~~~~~~~~~~~~i~vwd~~~~----------------------------- 192 (332)
.- ++.. ..+ +.+++ .+..+-+ +..+++++...-+|+|+....
T Consensus 390 ~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 390 RW-GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred cc-ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 43 1111 111 11222 2333334 334444444556677753210
Q ss_pred --CCC------------------------------Cee-------E----EEecCCCCCceeEEEcCCCCEEEEEcCCC-
Q 020021 193 --EKG------------------------------PFD-------I----FSVGGDISDANVVKFSNDGRLMLLTTMEG- 228 (332)
Q Consensus 193 --~~~------------------------------~~~-------~----~~~~~~~~~v~~v~~s~dg~~l~~~~~dg- 228 (332)
++. |+. . ..+=||-..+.+++.||+|.++|++....
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~ 548 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL 548 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC
Confidence 000 000 0 01124446789999999999999987553
Q ss_pred ----eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce----EEEecCCCCCCceEE
Q 020021 229 ----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE----VASWMSFDTEPPVIK 300 (332)
Q Consensus 229 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~----~~~~~~~~~~v~~l~ 300 (332)
.|++|+..+-..+..+. .|.-.++.++|||||+||+++|.|+++.+|....... ....+.|..-|++..
T Consensus 549 ~ehAvI~lw~t~~W~~~~~L~---~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 549 KEHAVIRLWNTANWLQVQELE---GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS 625 (764)
T ss_pred ccceEEEEEeccchhhhheec---ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence 59999987766655554 4667899999999999999999999999999865432 233578998899999
Q ss_pred eCCCeeEEEeccce--EEEec
Q 020021 301 WTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 301 ~sp~~~~l~t~~~d--~~~w~ 319 (332)
|+|++.+|+|+|.| +++|.
T Consensus 626 W~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 626 WSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred cCcccceeEEecCCceEEEEe
Confidence 99999999999998 66664
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.9e-22 Score=175.08 Aligned_cols=278 Identities=15% Similarity=0.262 Sum_probs=211.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~ 111 (332)
.+.|++|.|+|...+|++|+.|++++||-++ .+..++.+.....++..++|.|.|...++.+ |....+..||+++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s--~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS--GRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec--ccceEEEEeecccc
Confidence 3889999999999999999999999999876 4566788888888999999999999544443 34667999999988
Q ss_pred ceE--EEeecccc-cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEc-CCCeEEEEEeCCEEEE
Q 020021 112 KYL--RYFKGHHD-RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYD-DQGLVFAVAFGGYIRM 186 (332)
Q Consensus 112 ~~~--~~~~~h~~-~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~i~v 186 (332)
+.. +-+.|+.. .+....+++++++++.+|..|.|.+-...++..+..++..++. ...++ +...+++++.+|.|.+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 753 34456654 4556778999999999999999999999998888888877653 23344 4556777778899999
Q ss_pred EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC------eEeEEeeecCCCCCcceEEEEC
Q 020021 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~~v~~s 260 (332)
||++.. .....+...|.. .-+.++.|++|+++|+|+..|-|.|||..+. +++..+. .-...|..+.|+
T Consensus 371 ~nl~~~--~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn 444 (514)
T KOG2055|consen 371 WNLRQN--SCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFN 444 (514)
T ss_pred EecCCc--ceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeC
Confidence 999865 233344443332 2367889999999999999999999996432 2222221 234567789999
Q ss_pred CCCCEEEEEcC--CCcEEEEECCCCceEEEecCCC---CCCceEEeCCCeeEEEeccce--EEEec
Q 020021 261 PEGMFVISGSG--DGSVYAWSVRSGKEVASWMSFD---TEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 261 pdg~~l~sgs~--Dg~i~vWd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
||.+.||.+|. +..+|+-.+.....-..+...+ +.++||+|||.+.+++.|-.+ +.+|-
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 99999999976 5588888887766555554433 356999999999999988776 55553
No 114
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.4e-22 Score=182.17 Aligned_cols=287 Identities=16% Similarity=0.246 Sum_probs=209.0
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC----
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW---- 99 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~---- 99 (332)
.+....|+||++.|.+|+.+|.|.+|++|+.||+||||.+.+|.|+.++.... .|.+++|.|.+...+.+...+-
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEE
Confidence 34556789999999999999999999999999999999999999999886543 6899999998875444332221
Q ss_pred ---------------------------CceeEEEEccCC----ceEEEeecccccEEEEEecCCCCeEEEeeCCC---cE
Q 020021 100 ---------------------------DESLRLLSLHDN----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR---TV 145 (332)
Q Consensus 100 ---------------------------d~~v~v~d~~~~----~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg---~i 145 (332)
+.++-.|.-... .-++..-.|...|+.+.|+..|++|++...|+ .|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 122334432210 01234456889999999999999999997754 67
Q ss_pred EEEeCCCceEEEEEEe-cC-ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEE
Q 020021 146 LLWDQRAEKCQGLLRV-QG-RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL 223 (332)
Q Consensus 146 ~iWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~ 223 (332)
.|.++...+...-|+. .+ ...+.|++..-++.++....||+||+..... ....+.+ ..-+..++++|.|..++.
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---vKkL~tg-~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---VKKLLTG-SKWISSMSIHPNGDNLIL 624 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH---HHHHhcC-CeeeeeeeecCCCCeEEE
Confidence 7888766554443422 22 3456788888888899999999999864211 0000001 124677899999999999
Q ss_pred EcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-------CCc--eEEEecCCC
Q 020021 224 TTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR-------SGK--EVASWMSFD 293 (332)
Q Consensus 224 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~-------~~~--~~~~~~~~~ 293 (332)
++.|+.+..+|+..+. +.++++ .|...+.+|+|++-=..+++|+.||++.|+.-. +.. .++.+.+|.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr---~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLR---LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhh---hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 9999999999997653 334444 467788899999999999999999999999421 111 245566776
Q ss_pred CC----CceEEeCCCeeEEEeccce--EEEe
Q 020021 294 TE----PPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 294 ~~----v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
.. |....|||..-.|.+++.| +++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 54 7778899999888887766 7666
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.4e-22 Score=185.56 Aligned_cols=268 Identities=15% Similarity=0.201 Sum_probs=203.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~ 109 (332)
-+|+...+.|+|.|+|..|.|++.|+.||+|+...- +.-.++..+...|.. +......++.++. +++|.+|...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~--ia~~s~~f~~~s~---~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSS--IACYSNHFLTGSE---QNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEE--EeecccceEEeec---cceEEEeeCC
Confidence 368888999999999999999999999999998755 333444333333444 4444557777764 7899999999
Q ss_pred CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc--eeEEEcCCCeEEEEE-eCCEEEE
Q 020021 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFAVA-FGGYIRM 186 (332)
Q Consensus 110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~i~v 186 (332)
+++.-..+..-+-+++.++|+.+|+++|.||.|-.|++-++........++.+.. ....+++++.+++++ .||.|++
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 9887767777888999999999999999999999999999877766666655433 356778888777766 5899999
Q ss_pred EECccCCCCCeeE--EE-ec-CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 187 FDARKYEKGPFDI--FS-VG-GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 187 wd~~~~~~~~~~~--~~-~~-~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
||+.......... .. .. .....+..++|+|+|..++....|+.|.+|+....+....++....+.. +..+.|||.
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~-~~~~~wsPn 243 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK-FSDLQWSPN 243 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc-eEEEEEcCC
Confidence 9987543211100 00 00 0012356689999999999999999999999999988887776554433 778899999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE
Q 020021 263 GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF 308 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 308 (332)
|+|||+++.||.|-|||+.+-.. + -....|.+++|.|++..+
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~~~-~---~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTHER-H---EFKRAVCCEAWKPNANAI 285 (933)
T ss_pred CcEEeeeccCCcEEEEecccchh-c---cccceeEEEecCCCCCee
Confidence 99999999999999999987211 1 223568899999986543
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.9e-21 Score=162.78 Aligned_cols=239 Identities=15% Similarity=0.251 Sum_probs=182.8
Q ss_pred eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC--eEEEeeCCCcEE
Q 020021 69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD--CFISGSLDRTVL 146 (332)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~--~l~s~s~Dg~i~ 146 (332)
+..+.+|...++.++++ +.+++++++ |.+|++||+.....+..+-.|.+.|+++.|.+.-. .|+||+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGss---DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSS---DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCC---CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 45667788778877664 557776654 99999999999999999999999999999998654 999999999999
Q ss_pred EEeCCCceEEEEEEecC--ceeEEEcCCCe-EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEE
Q 020021 147 LWDQRAEKCQGLLRVQG--RPAAAYDDQGL-VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLL 223 (332)
Q Consensus 147 iWd~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~ 223 (332)
+|+...=.+...++.+. .+....+|.+. -++++.|+.+++||+-..+..... .+ . .....+.|+|.|.+++.
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L-~--~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL--NL-K--NKATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee--cc-C--CcceeeEEcCCCCEEEE
Confidence 99987766777766542 44567778775 456777999999998765443221 11 1 12345899999998888
Q ss_pred EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEe--
Q 020021 224 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKW-- 301 (332)
Q Consensus 224 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~-- 301 (332)
+..+ .|-+|.+.+..+..+... ...+.++.| -++.+|++|++|+.|++||.....+...+.+|..+|..+.+
T Consensus 186 ~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASVFREIEN----PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred Eecc-EEEEEecccHhHhhhhhc----cccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence 7665 677888776655444331 122334444 47889999999999999999888889999999999999985
Q ss_pred CCCeeEEEeccce--EEEeccccc
Q 020021 302 TPGSLMFVTGSSE--LSFWIPDLS 323 (332)
Q Consensus 302 sp~~~~l~t~~~d--~~~w~~~~~ 323 (332)
.|++.+|+|+|+| +++|+.+-.
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 6788999999998 888876544
No 117
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=182.80 Aligned_cols=250 Identities=20% Similarity=0.246 Sum_probs=182.9
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEE--eeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
+.+..|-..|+.+.|-|-...|++++.|.|+|.||++++++... +.+|...|..+||.+....+++. +|.|+.+.|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t--GgRDg~ill 171 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT--GGRDGEILL 171 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee--ccCCCcEEE
Confidence 45678999999999999667899999999999999999998866 88999999999999988876654 467999999
Q ss_pred EEccCCce---------------------------EEEeecccccEEE---EEecCCCCeEEEeeC-CCcEEEEeCCCce
Q 020021 106 LSLHDNKY---------------------------LRYFKGHHDRVVS---LSLCSSKDCFISGSL-DRTVLLWDQRAEK 154 (332)
Q Consensus 106 ~d~~~~~~---------------------------~~~~~~h~~~V~~---v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~ 154 (332)
||+..... +..-+.|...|.+ +.+..|...|||+|. |++|++||++.+.
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 99853320 1112234444555 556678889999988 9999999998876
Q ss_pred EEEEEE------ec-------CceeEEEcCC-CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC--ceeEEEcCCC
Q 020021 155 CQGLLR------VQ-------GRPAAAYDDQ-GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD--ANVVKFSNDG 218 (332)
Q Consensus 155 ~~~~~~------~~-------~~~~~~~~~~-~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~--v~~v~~s~dg 218 (332)
+..... .+ +..+...+.. ..+++.+.|+.|.+|+++.....+...+. ++... -..-..|||+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s--g~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS--GKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc--CcccceeeeeeecCCCC
Confidence 543221 11 1223344443 45667778999999999987665543332 22211 1223579999
Q ss_pred CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECCCC
Q 020021 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSG 283 (332)
Q Consensus 219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~~ 283 (332)
.++++++.|.+.++|.+.+.+.--.. ..+|...++.|+|.|. -.-++|+++|-.++||++.++
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~--l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPAL--LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhh--hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999999998876543222 2356677888888763 356677799999999999664
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=185.13 Aligned_cols=248 Identities=12% Similarity=0.229 Sum_probs=200.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC--EEEEecCCCCCceeEEEEccC
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHD 110 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~~v~v~d~~~ 110 (332)
....|.+|++||+|.+||+|..-|++||||+...+....+.+|...|.++.++.... .++++ ++.|..|-++|+..
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS--asrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS--ASRDRLIHVYDVKR 535 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh--ccCCceEEEEeccc
Confidence 445689999999999999999999999999998888888999999999988876432 23332 34589999999976
Q ss_pred C-ceEEEeecccccEEEEEecCCC--CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEE
Q 020021 111 N-KYLRYFKGHHDRVVSLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMF 187 (332)
Q Consensus 111 ~-~~~~~~~~h~~~V~~v~~~~~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vw 187 (332)
. ..+.++.+|...|+++.|...| ...+|++.|+.|.+--.+.. .++.++.-..
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~-----------------~~g~~f~r~t------- 591 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA-----------------SSGRLFPRHT------- 591 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc-----------------cCceeccccc-------
Confidence 3 3577899999999999998766 68999999999776321100 0011110000
Q ss_pred ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021 188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 267 (332)
Q Consensus 188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~ 267 (332)
..+ ....+..++..|..+++++++.|+.|+|||+.+|++...|+....+.+..+.+...|.|.|||
T Consensus 592 ------------~t~--~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 592 ------------QTL--SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred ------------ccc--ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 000 012345567788899999999999999999999999999988777778888999999999999
Q ss_pred EEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 268 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 268 sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
+...|+++.++|.-+++++..+.+|...|+.+.|.+|.++|+++++| +.+|..
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 99999999999999999999999999999999999999999999999 667754
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=5.9e-22 Score=181.28 Aligned_cols=289 Identities=15% Similarity=0.202 Sum_probs=191.3
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~tgs--~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~ 106 (332)
.+..|..++++++||++|+|+|||= .-..+|+|++.....+..+..|.+.|++++|+|.++++++... -.|..|.+|
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs-QHDMIVnv~ 151 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS-QHDMIVNVN 151 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc-ccceEEEhh
Confidence 3556778999999999999999976 6678999999998888999999999999999999999887543 348889999
Q ss_pred EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE------------------------------
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ------------------------------ 156 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~------------------------------ 156 (332)
|+.-+..... ..-...|..++|+.|+.+++|++. ..|++|.+..++..
T Consensus 152 dWr~N~~~as-nkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gi 229 (1080)
T KOG1408|consen 152 DWRVNSSGAS-NKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGI 229 (1080)
T ss_pred hhhhcccccc-cccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcc
Confidence 8754322111 112456889999999999999986 67899987644310
Q ss_pred ---EEEEe--cCc--------------------eeEEEcCCCeEEEEEeCCEEEEEECccCCCC----------------
Q 020021 157 ---GLLRV--QGR--------------------PAAAYDDQGLVFAVAFGGYIRMFDARKYEKG---------------- 195 (332)
Q Consensus 157 ---~~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~---------------- 195 (332)
.++.. .+. ..+..-....++.+..+|.||+|+-.+....
T Consensus 230 cAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~ 309 (1080)
T KOG1408|consen 230 CAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL 309 (1080)
T ss_pred cccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence 00000 000 0000012233444456777777764321100
Q ss_pred --CeeEEEe--cCCCCCceeEEEcCCC-----------------------------------------------------
Q 020021 196 --PFDIFSV--GGDISDANVVKFSNDG----------------------------------------------------- 218 (332)
Q Consensus 196 --~~~~~~~--~~~~~~v~~v~~s~dg----------------------------------------------------- 218 (332)
+-..+.. .....+..++.|++..
T Consensus 310 ~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~ac 389 (1080)
T KOG1408|consen 310 SQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAAC 389 (1080)
T ss_pred ccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCccccc
Confidence 0000000 0000111112222111
Q ss_pred ---CEEEEEcCCCeEEEEEccCCeEeEEeee----------------------------------cCCCCCcceEEEECC
Q 020021 219 ---RLMLLTTMEGHIHVLDSFRGTLLSTYNV----------------------------------KPVSRNSTLEASFSP 261 (332)
Q Consensus 219 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------------~~~~~~~~~~v~~sp 261 (332)
..+.+++.|++|++||+..+..-..++. .......+.+++.||
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP 469 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence 2368899999999999875321111100 011234566799999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCC---CeeEEEeccceEEEecc
Q 020021 262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP---GSLMFVTGSSELSFWIP 320 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~t~~~d~~~w~~ 320 (332)
+|++||+|.--|+++|+++.+.+....+.+|.++|.||.||. ..++|++++.|..|...
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 999999999999999999999888888889999999999976 35799999999554433
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=8.7e-21 Score=167.58 Aligned_cols=293 Identities=16% Similarity=0.249 Sum_probs=204.5
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCC--------cEEEEEcCCCeeeEEeeecccceeEEEEccCCC-EEEEecCC
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDE--------SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKN 97 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~--------tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~~ 97 (332)
.+-+.||+..|.|+..+||.-.+++|-.-+ .+||||..+...++.+.....+|.+++|++... .++.....
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence 345789999999999999988888766555 499999998888888888788999999998544 34444445
Q ss_pred CCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEE---Ee---cCceeEEEc
Q 020021 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLL---RV---QGRPAAAYD 170 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~---~~---~~~~~~~~~ 170 (332)
+.+..+.|||.+.+......+.-+..|..+.|+|... .++|++ .+.+.+|+.+.+...... .- ....+..|.
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 6677899999988776666666677888999999555 555554 588999999887654322 11 223467888
Q ss_pred CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc--------------
Q 020021 171 DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-------------- 236 (332)
Q Consensus 171 ~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~-------------- 236 (332)
+++.++++.++|.|.+|+.+..+..+ ....|...|.+++.-.+|+++- |+.|+.|..||-.
T Consensus 256 engdviTgDS~G~i~Iw~~~~~~~~k----~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTNRISK----QVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCceEEe----EeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcC
Confidence 99999999999999999986533211 1113444555555555555333 5555555555421
Q ss_pred ------------------------------------------------------------------CCeEe--EEe----
Q 020021 237 ------------------------------------------------------------------RGTLL--STY---- 244 (332)
Q Consensus 237 ------------------------------------------------------------------~~~~~--~~~---- 244 (332)
.-+++ ..+
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPA 410 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCce
Confidence 00000 000
Q ss_pred -------------------------------eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc-eEEEe-cC
Q 020021 245 -------------------------------NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EVASW-MS 291 (332)
Q Consensus 245 -------------------------------~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~-~~~~~-~~ 291 (332)
..+ ..+.++..++|+|||.+||.||.|+.|+|+-+.... ..... ..
T Consensus 411 ~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~ 489 (626)
T KOG2106|consen 411 ECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC 489 (626)
T ss_pred eEeeccCcceEEEeeccceEEEEecccceeEEEE-ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence 000 013455568999999999999999999999996543 33222 23
Q ss_pred CCCCCceEEeCCCeeEEEeccce--EEEecccccccc
Q 020021 292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLG 326 (332)
Q Consensus 292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~ 326 (332)
+.+++++|.||+|+++|.+.+.| +.+|.+.++++.
T Consensus 490 ~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 490 SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred cCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 44789999999999999987765 899988777654
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2.2e-20 Score=165.05 Aligned_cols=242 Identities=19% Similarity=0.290 Sum_probs=181.8
Q ss_pred cceeEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 25 EVGMSFRDYN-GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 25 ~~~~~l~~h~-~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
+....|.+++ +-|.|++|.++|+ ++||..+|+|.||+..+....++...|+.+|.++|...+|+.+ ++ |-|..|
T Consensus 236 k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SG---gKDRki 310 (626)
T KOG2106|consen 236 KRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SG---GKDRKI 310 (626)
T ss_pred EEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ec---CccceE
Confidence 3344566655 4599999999884 5699999999999998877777777999999999999888644 33 558888
Q ss_pred EEEEccCCce----------------------------------------EEEeecccccEEEEEecCCCCeEEEeeCCC
Q 020021 104 RLLSLHDNKY----------------------------------------LRYFKGHHDRVVSLSLCSSKDCFISGSLDR 143 (332)
Q Consensus 104 ~v~d~~~~~~----------------------------------------~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg 143 (332)
..||-.-.+. ..+.++|.+..+.++.+|+.++++|++.|+
T Consensus 311 ~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk 390 (626)
T KOG2106|consen 311 ILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK 390 (626)
T ss_pred EeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc
Confidence 8888321110 122458999999999999999999999999
Q ss_pred cEEEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE
Q 020021 144 TVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222 (332)
Q Consensus 144 ~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 222 (332)
.+++|+ ..+++-..... ...++.++|.+.++.+...|..-+.|..+.. +..+..+.++++++.|||||.++|
T Consensus 391 ~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-----lv~~~~d~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-----LVTIHTDNEQLSVVRYSPDGAFLA 463 (626)
T ss_pred eEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce-----eEEEEecCCceEEEEEcCCCCEEE
Confidence 999998 44444444332 3346778888844444457889999987521 223323356889999999999999
Q ss_pred EEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 223 LTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 223 ~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.++.|+.|++|-+..+.. ....... +..+++.+.||+|++||.+-|-|-.|-.|..
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 999999999998865433 3333222 2378889999999999999999999999944
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=5.3e-21 Score=177.74 Aligned_cols=188 Identities=15% Similarity=0.293 Sum_probs=149.8
Q ss_pred ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE---ecCce--eEEEcC-CCeEEEEEeCCEEEEEECccCCCC
Q 020021 122 DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKG 195 (332)
Q Consensus 122 ~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~--~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~ 195 (332)
..+++++.++-|++.+-|+..|+|-+++++++-....+- .+..+ ..+.+. +..+++++.+|.+++||.....
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-- 526 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-- 526 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--
Confidence 678899999999999999999999999999987666551 22222 333333 4467888889999999986532
Q ss_pred CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021 196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 275 (332)
Q Consensus 196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i 275 (332)
....+.++ ..+..+.++....+++.+..|-.|+++|..+.+..+.+. +|.+.+++.+|||||++|++++.|++|
T Consensus 527 l~~~l~l~---~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~---gh~nritd~~FS~DgrWlisasmD~tI 600 (910)
T KOG1539|consen 527 LKKSLRLG---SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW---GHGNRITDMTFSPDGRWLISASMDSTI 600 (910)
T ss_pred eeeeeccC---CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh---ccccceeeeEeCCCCcEEEEeecCCcE
Confidence 11122221 245667778888889999999999999999888888877 577899999999999999999999999
Q ss_pred EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce---EEEe
Q 020021 276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFW 318 (332)
Q Consensus 276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d---~~~w 318 (332)
|+||+.++.++-.+. .+.+.+.++|||+|.+|+|+..| +.+|
T Consensus 601 r~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 601 RTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred EEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 999999999887664 45578999999999999998876 6666
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.7e-22 Score=174.17 Aligned_cols=215 Identities=18% Similarity=0.238 Sum_probs=170.7
Q ss_pred cccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee-------eEEeeecccceeEEEEccCCCEEEEe
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATC-------LKTINSKKYGVDLVCFTSHPTTVIYS 94 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~ 94 (332)
...+...|+||+++=++++|++.. .+|++++.|++|.+||+..... ...+.+|...|..++|++....++.+
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 345556799999988899999765 5799999999999999974322 34577899999999999988887766
Q ss_pred cCCCCCceeEEEEcc--CCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC
Q 020021 95 SKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 171 (332)
Q Consensus 95 s~~g~d~~v~v~d~~--~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 171 (332)
+ +.|+.+.+||.. +.++.+...+|.++|++++|+| ++..|||||.|++|++||+|.-+.
T Consensus 246 v--~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---------------- 307 (422)
T KOG0264|consen 246 V--GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---------------- 307 (422)
T ss_pred e--cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------------
Confidence 5 348899999998 5667788899999999999999 556899999999999999875421
Q ss_pred CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeE--------
Q 020021 172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLS-------- 242 (332)
Q Consensus 172 ~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~-------- 242 (332)
......+|...|..|.|||.. +++++++.|+.+.+||+.+-...+
T Consensus 308 --------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 308 --------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred --------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 112334566788899999976 677888999999999985421111
Q ss_pred ---EeeecCCCCCcceEEEECCCCC-EEEEEcCCCcEEEEECC
Q 020021 243 ---TYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVYAWSVR 281 (332)
Q Consensus 243 ---~~~~~~~~~~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~ 281 (332)
.+-.+.+|...|....|+|+.. .++|+++|+.+.||.+.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1234567888899999999764 67788999999999986
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=9.5e-23 Score=179.82 Aligned_cols=231 Identities=17% Similarity=0.260 Sum_probs=188.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~ 110 (332)
-...|.++.+.|||+.|++|+.-.++-|||+..... ...+.........++.+|+.+..+++.+ |+.|+|||+.+
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhn 540 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHN 540 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEccc
Confidence 446688899999999999999999999999975433 2334333344566788999988887775 78999999999
Q ss_pred CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR 190 (332)
Q Consensus 111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~ 190 (332)
...++.|+||++.+.++++++||..|.||+-|.++|.||+++++.....
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh------------------------------- 589 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH------------------------------- 589 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-------------------------------
Confidence 9999999999999999999999999999999999999999876532110
Q ss_pred cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021 191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 270 (332)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs 270 (332)
. -.+.|.++.++|.+..+++|-.++.+-+.-....+.. .+ ..|..+|.++.|++.|+++++.+
T Consensus 590 -----d--------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-ql---hlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 590 -----D--------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-QL---HLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred -----h--------hhhhheecccCCCccceeeecccCcEEEEecCCccce-ee---cccccEEEEEEecccCceeeecC
Confidence 0 0134667788999999999999999998876554432 22 25778999999999999999999
Q ss_pred CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceE
Q 020021 271 GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSEL 315 (332)
Q Consensus 271 ~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~ 315 (332)
.|.-+..|...-|..+...+ ....|.+...|-|.++++||++|.
T Consensus 653 kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence 99999999998888776543 345788899999999999999983
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.4e-21 Score=158.79 Aligned_cols=246 Identities=11% Similarity=0.226 Sum_probs=177.5
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC----CCeeeEEeeecccceeEEEEcc--CCCEEEEecCCCCCceeE
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT----AATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~----~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~s~~g~d~~v~ 104 (332)
.+|.+-|.+++|++-|+++||++.|.+|+|||.. +-.|....+.|...|..+.|.+ .|+-+++++ +|.+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCCcee
Confidence 5799999999999999999999999999999964 3456777889999999988865 344445454 599999
Q ss_pred EEEccC--Cc-------eEEEeecccccEEEEEecCC--CCeEEEeeCCCcEEEEeCCCceEEE------EEE----ecC
Q 020021 105 LLSLHD--NK-------YLRYFKGHHDRVVSLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQG------LLR----VQG 163 (332)
Q Consensus 105 v~d~~~--~~-------~~~~~~~h~~~V~~v~~~~~--~~~l~s~s~Dg~i~iWd~~~~~~~~------~~~----~~~ 163 (332)
+|.-.. -+ ...++......|+.+.|+|. |-.+|+++.||++||++.-..-.+. .++ .++
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997521 11 24567778889999999984 5689999999999999854322111 111 111
Q ss_pred c---e--eEEEcC---CCeEEEEEeCC------EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC----CEEEEEc
Q 020021 164 R---P--AAAYDD---QGLVFAVAFGG------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTT 225 (332)
Q Consensus 164 ~---~--~~~~~~---~~~~~~~~~~~------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg----~~l~~~~ 225 (332)
+ + +..+.+ ...+++++.+. .+.||......+.-..+..+.++..+|+.++|+|.- .++++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 1 1 222222 23577777765 889997543322222344556788899999999963 5789999
Q ss_pred CCCeEEEEEccCC------------e-----EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 226 MEGHIHVLDSFRG------------T-----LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 226 ~dg~i~i~d~~~~------------~-----~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.|| |+||.+... . .+........|...++++.|.-.|..|+|.|.||+||+|..
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999 999998621 0 11112223467789999999999999999999999999965
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=4.1e-20 Score=171.87 Aligned_cols=302 Identities=12% Similarity=0.239 Sum_probs=229.3
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
++-+.+.+|++|...|+++.=+|-=+.+|.|-.||+|.|+++..++.+.+++.....|+.++|..+|..+++++. ..+
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~--~~G 267 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR--SNG 267 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc--CCc
Confidence 456778899999999999998888889999999999999999999999999876678999999999997766542 257
Q ss_pred eeEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-----------------EEEEE----
Q 020021 102 SLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----------------CQGLL---- 159 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-----------------~~~~~---- 159 (332)
.+-+||++..+.+..++ .|.+.|....|.+....++|++.|..+++|=+.++. |+..+
T Consensus 268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 89999999988777666 688899999999988899999999999998443211 11000
Q ss_pred --Eec----------------------C--------------------ceeEEEc--C-----CCeEEEEEe-CCEEEEE
Q 020021 160 --RVQ----------------------G--------------------RPAAAYD--D-----QGLVFAVAF-GGYIRMF 187 (332)
Q Consensus 160 --~~~----------------------~--------------------~~~~~~~--~-----~~~~~~~~~-~~~i~vw 187 (332)
... . .+...+. . -..++++.. +...+.|
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence 000 0 0001110 0 013444443 3577889
Q ss_pred ECccCCCCCeeEEE--ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021 188 DARKYEKGPFDIFS--VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (332)
Q Consensus 188 d~~~~~~~~~~~~~--~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~ 265 (332)
+.++...+...... .......+.+|+.|+-|.+.+.|...|.|-+|++.+|-....|-..+.|..+++.++..--++.
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence 88876544332211 1112356889999999999999999999999999999877777545567889999999888899
Q ss_pred EEEEcCCCcEEEEECCCCceEEEe-----------------------------------------cCCCCCCceEEeCCC
Q 020021 266 VISGSGDGSVYAWSVRSGKEVASW-----------------------------------------MSFDTEPPVIKWTPG 304 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~~~~~~~~-----------------------------------------~~~~~~v~~l~~sp~ 304 (332)
++|++.||-+..||..++..+..+ .+|+..+++++||||
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred EEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 999999999999999876533222 268999999999999
Q ss_pred eeEEEeccce--EEEeccccccc
Q 020021 305 SLMFVTGSSE--LSFWIPDLSKL 325 (332)
Q Consensus 305 ~~~l~t~~~d--~~~w~~~~~~~ 325 (332)
|+.+++++.| +++||.....|
T Consensus 588 grWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcce
Confidence 9999999998 66676555443
No 127
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-21 Score=176.45 Aligned_cols=241 Identities=16% Similarity=0.293 Sum_probs=194.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee
Q 020021 39 SMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK 118 (332)
Q Consensus 39 ~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~ 118 (332)
-++|+. .+.|| .+....|.+|+..++........+...|+.+.++++|..++.+.. ++.|.+||.++.+.+..+.
T Consensus 182 lldWss-~n~la-Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWSS-ANVLA-VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhccc-CCeEE-EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec---CCeEEEEehhhcccccccc
Confidence 356763 34554 555678999999999876666655778999999999999999876 7799999999999999999
Q ss_pred c-ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCe
Q 020021 119 G-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPF 197 (332)
Q Consensus 119 ~-h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~ 197 (332)
+ |...|.+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--------------------------------------- 295 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--------------------------------------- 295 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh---------------------------------------
Confidence 9 99999999998 57899999999999999876542110
Q ss_pred eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC-CCCEEEEE--cCCCc
Q 020021 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG--SGDGS 274 (332)
Q Consensus 198 ~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp-dg~~l~sg--s~Dg~ 274 (332)
.+.+|...|..+++++|+.++++|+.|+.+.|||....+++..+. .|...|-+++|+| ....||+| +.|++
T Consensus 296 ---~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 296 ---TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred ---hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 022455678889999999999999999999999997777776665 5778888999999 67788888 67999
Q ss_pred EEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc----eEEEecc-cccccccccccC
Q 020021 275 VYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS----ELSFWIP-DLSKLGAYVGRK 332 (332)
Q Consensus 275 i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~----d~~~w~~-~~~~~~~~~~~~ 332 (332)
|++||..+++.+...-. ...|..|.|+|..+-++++-+ ++.+|.+ ...++..+.||.
T Consensus 370 i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred EEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence 99999999998877543 457999999999866665432 4999985 666777777763
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.6e-23 Score=188.68 Aligned_cols=221 Identities=20% Similarity=0.386 Sum_probs=179.7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~ 125 (332)
+..++....+..+++||... +..|...+.++......+.++. +|+|..+.+|.+.....+..|.+|..+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~---Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVT---GGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeecc---CCCceeeccccccCCchhheeeccCCcce
Confidence 34566777788889998753 2344444555444334444443 47788999999888778888999999999
Q ss_pred EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC
Q 020021 126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD 205 (332)
Q Consensus 126 ~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~ 205 (332)
++.|+++...|++|+.||+|++||++..+...+ +.++
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-------------------------------------------Ltgh 111 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-------------------------------------------LTGH 111 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhh-------------------------------------------hhcc
Confidence 999999999999999999999999976553322 1234
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021 206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 206 ~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
..++..+.|+|-+.+.+.++.|..+.+||.+...+.+.+. .|...+..+.|+|+|+++++|++|.+++|||...|+.
T Consensus 112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~ 188 (825)
T KOG0267|consen 112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL 188 (825)
T ss_pred ccCcceeeeccceEEeccccccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeeccccccc
Confidence 4567788899999999999999999999998666666665 3556667789999999999999999999999999999
Q ss_pred EEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021 286 VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 321 (332)
Q Consensus 286 ~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~ 321 (332)
+..|..|.+.+..+.|+|..-++++|+.| +++|+.+
T Consensus 189 ~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 189 SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 99999999999999999999999999998 7778765
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3e-20 Score=155.73 Aligned_cols=274 Identities=18% Similarity=0.324 Sum_probs=197.8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116 (332)
Q Consensus 37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~ 116 (332)
-.|+.|++-|.+||.|..||.|-|||+.|...-+.+.+|-.+|.++||+++|.++++++. |..+.+||+-.|.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeE
Confidence 678999999999999999999999999999888889999999999999999999998875 88999999999998877
Q ss_pred eecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEec------Cc-eeEEEcCCCeEEEEE-eCCEEEEE
Q 020021 117 FKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQ------GR-PAAAYDDQGLVFAVA-FGGYIRMF 187 (332)
Q Consensus 117 ~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~-~~~~i~vw 187 (332)
++ ..++|+.+.|+|.. +.++..-.+..-.+-++..++ ...+... .. ....+++.+.++.+| ..|.+-++
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 76 67899999999944 344444455544555554322 1122111 01 123466777666555 56999999
Q ss_pred ECccCCCC-CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-------CeEeEEeeecC-CCCCcceEEE
Q 020021 188 DARKYEKG-PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GTLLSTYNVKP-VSRNSTLEAS 258 (332)
Q Consensus 188 d~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~-~~~~~~~~v~ 258 (332)
|..+.+-- .+.+.. ...+..+.|+..|+.++..+.|+.|+.++... +++.-..+... .....-.+++
T Consensus 181 ~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 181 DAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred ecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 98765311 111111 13577789999999999999999999999752 11110000000 0011123579
Q ss_pred ECCCCCEEEEEcC-CCcEEEEECCCCceEEEecCCC-CCCceEEeCCCeeEEEeccc-eEEEec
Q 020021 259 FSPEGMFVISGSG-DGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSS-ELSFWI 319 (332)
Q Consensus 259 ~spdg~~l~sgs~-Dg~i~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~t~~~-d~~~w~ 319 (332)
||.||.|+.+++. -..+|||.-..|..++-+-+-. .....+.|+|-.-.+++-.+ -+.+|.
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA 320 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence 9999999988864 4489999999999998886655 45677899999887777544 488884
No 130
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=161.28 Aligned_cols=307 Identities=12% Similarity=0.154 Sum_probs=210.0
Q ss_pred HHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC------CeeeEEeee-cccceeEEEEccCCCEE
Q 020021 19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA------ATCLKTINS-KKYGVDLVCFTSHPTTV 91 (332)
Q Consensus 19 ~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~ 91 (332)
..++.--..|.+.+|.+.|++|.||.++.+|++|+.|..+++|+++. .+.+..... |...|.+++|....+++
T Consensus 41 ~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 41 DFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL 120 (609)
T ss_pred hhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE
Confidence 33333334567889999999999999999999999999999999864 234443333 34678899999888777
Q ss_pred EEecCCCCCceeEEEEccCCceEEEeec--ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecCc----
Q 020021 92 IYSSKNGWDESLRLLSLHDNKYLRYFKG--HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGR---- 164 (332)
Q Consensus 92 ~~~s~~g~d~~v~v~d~~~~~~~~~~~~--h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~~---- 164 (332)
+++ +-+++|.+.|+++.+.+..+.. ..+.|..++.+|..+.|++.+.||.|.+||.+... ....+.....
T Consensus 121 ~SG---~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 121 YSG---ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred ecC---CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 765 3478999999999887776642 23489999999999999999999999999998655 2333322221
Q ss_pred eeEEEcC-CCeEEEEE-eCCEEEEEECccCCCCCee---EEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe
Q 020021 165 PAAAYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 239 (332)
Q Consensus 165 ~~~~~~~-~~~~~~~~-~~~~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~ 239 (332)
..+.++| ...++++. ..+.+-+||.|.....-+. ...+.........+.|+|.|..+++--....-..||..+..
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 2345555 33444444 4678999999875433221 11111111233668899999988876666666677876533
Q ss_pred EeEEeeecCCC----CCc-ceEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eEEEecC
Q 020021 240 LLSTYNVKPVS----RNS-TLEASFSPEGMFVISGSGDGSVYAWSVRSGK-----------------------EVASWMS 291 (332)
Q Consensus 240 ~~~~~~~~~~~----~~~-~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~~~~ 291 (332)
+. .+...... ..+ +-+++| .+.+.+++||.|-.|++|.+.... .+..+.+
T Consensus 278 ~~-V~k~D~N~~GY~N~~T~KS~~F-~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 278 CF-VLKSDHNPNGYCNIKTIKSMTF-IDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred ce-eEeccCCCCcceeeeeeeeeee-ecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 21 12111011 111 123455 566779999999999999885311 1223568
Q ss_pred CCCCCceEEeCCCeeEEEeccce--EEEeccccccccccccc
Q 020021 292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKLGAYVGR 331 (332)
Q Consensus 292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~~~~~~ 331 (332)
|-.-++.+.|+|-..++++.+-+ +++|.+-.+ .+.|+||
T Consensus 356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~-P~~~D~~ 396 (609)
T KOG4227|consen 356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRL-PWSYDLP 396 (609)
T ss_pred ccccccceeecCCcceEeccchhhheeccccccC-CcccCCc
Confidence 88889999999999999887765 888987653 3777664
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6e-21 Score=160.08 Aligned_cols=216 Identities=19% Similarity=0.303 Sum_probs=156.8
Q ss_pred eEEEEccCCce-----EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-----EEE-EEEecCceeEEEcC
Q 020021 103 LRLLSLHDNKY-----LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-----CQG-LLRVQGRPAAAYDD 171 (332)
Q Consensus 103 v~v~d~~~~~~-----~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-----~~~-~~~~~~~~~~~~~~ 171 (332)
.+-|+-+..+. +..|+||.+.|++++|+.||+.|+|++.|++|++|+++.-. ++. .+.......+.|.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 44555554443 34578999999999999999999999999999999976411 111 11222223455555
Q ss_pred C--CeEEEEEeCCEEEEEECccCCCCCeeE--EE------ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe
Q 020021 172 Q--GLVFAVAFGGYIRMFDARKYEKGPFDI--FS------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 241 (332)
Q Consensus 172 ~--~~~~~~~~~~~i~vwd~~~~~~~~~~~--~~------~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~ 241 (332)
+ ..++++..++.+++|.+.....+.... .. ...|..++..+.....+.+|++++.|..|.+|++. |+++
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 4 456677778999999875543332211 11 11234566777888889999999999999999988 8888
Q ss_pred EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC---CCc-----eEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 242 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR---SGK-----EVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~---~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
..+... .......+.||+|+|+|+++----++||.+- .|. .+..+.+|.+.|..++|||+.++.+|+|.
T Consensus 222 ~~idtn---q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 222 QSIDTN---QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeccc---cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 776532 1223357899999999999888889999873 222 24567899999999999999999999999
Q ss_pred e--EEEecccc
Q 020021 314 E--LSFWIPDL 322 (332)
Q Consensus 314 d--~~~w~~~~ 322 (332)
| .++|+.+.
T Consensus 299 DG~wriwdtdV 309 (420)
T KOG2096|consen 299 DGKWRIWDTDV 309 (420)
T ss_pred CCcEEEeeccc
Confidence 8 67776543
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.6e-20 Score=156.06 Aligned_cols=209 Identities=20% Similarity=0.337 Sum_probs=153.7
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCe------------ee---EEeeecccceeEEEEccCCCEEEEe
Q 020021 31 RDYNGRISSMDFHK-SSSYLVTASDDESIRLYDVTAAT------------CL---KTINSKKYGVDLVCFTSHPTTVIYS 94 (332)
Q Consensus 31 ~~h~~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~------------~~---~~~~~~~~~v~~~~~~~~~~~~~~~ 94 (332)
+.|.|.|+++.+.+ .|+|+++|+.|+.+-+||++... |+ .--..|.++|..+-|.|..+.++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 56999999999975 68999999999999999997533 11 1123577889999999999888876
Q ss_pred cCCCCCceeEEEEccCCceEEEeecccccEEEEEecCC---CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC
Q 020021 95 SKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD 171 (332)
Q Consensus 95 s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~---~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 171 (332)
+ ++|.+++|||.++-+....|+ -.+.|.+-+++|- .-.+|+|..|-.|++-|+.++.+-..+.
T Consensus 120 s--SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls----------- 185 (397)
T KOG4283|consen 120 S--SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS----------- 185 (397)
T ss_pred c--cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----------
Confidence 5 469999999999877665554 4566777777773 2356677777889999998887654443
Q ss_pred CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCC-eEeEE------
Q 020021 172 QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLST------ 243 (332)
Q Consensus 172 ~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~-~~~~~------ 243 (332)
||...|.++.+||...+ +++++.||.|++||++.. .+...
T Consensus 186 --------------------------------GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 186 --------------------------------GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred --------------------------------cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence 44555666777776544 455677777777776543 11111
Q ss_pred -----eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021 244 -----YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 244 -----~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
.+..+.|...+..++|+.|++++++++.|..+++|+..+|+.
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 122234566778899999999999999999999999988764
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.1e-21 Score=179.07 Aligned_cols=236 Identities=20% Similarity=0.331 Sum_probs=168.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----eeeEEeeecc---cceeEEEEccCC-CEEEEecCCCCCceeEEEE
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAA----TCLKTINSKK---YGVDLVCFTSHP-TTVIYSSKNGWDESLRLLS 107 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~~~~~~~~~~---~~v~~~~~~~~~-~~~~~~s~~g~d~~v~v~d 107 (332)
...+|+..++-+.++-++. ..++||.++.. .|.......+ ..+..|.|.... +.+++++. .+.|.+||
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~---nG~i~vWd 116 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST---NGVISVWD 116 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC---CCcEEEEe
Confidence 3455666788888877765 45788877532 2222221111 122334555333 34566655 56899999
Q ss_pred ccC---CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCE
Q 020021 108 LHD---NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGY 183 (332)
Q Consensus 108 ~~~---~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (332)
+.. .+.+..|..|...|.+++|++ ...+|+|||+||+|++||++..+...++..
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---------------------- 174 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---------------------- 174 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----------------------
Confidence 987 555678899999999999998 567999999999999999987664433321
Q ss_pred EEEEECccCCCCCeeEEEecCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 184 IRMFDARKYEKGPFDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 184 i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
....++.|.|+| .+.+++++.+.|.+++||++....-. .....|.+++.++.|+|+
T Consensus 175 ---------------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 175 ---------------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPN 231 (839)
T ss_pred ---------------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeecCC
Confidence 223577889988 46788999999999999998765321 112357889999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCce--EEEecCCCCCCceEEeCCCee-EEEeccc--e--EEEeccc
Q 020021 263 GMFVISGSGDGSVYAWSVRSGKE--VASWMSFDTEPPVIKWTPGSL-MFVTGSS--E--LSFWIPD 321 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~~~~~~--~~~~~~~~~~v~~l~~sp~~~-~l~t~~~--d--~~~w~~~ 321 (332)
+.+|||||.|+.|+|||+.+.+. +.++. -.+++.+|+|.|+.. +|++.+. | +.+|+.-
T Consensus 232 r~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred CceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 99999999999999999976443 23332 236789999999875 6777654 3 8888764
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.4e-21 Score=155.47 Aligned_cols=212 Identities=13% Similarity=0.191 Sum_probs=158.2
Q ss_pred cceeEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCe--eeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 25 EVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
.+..+|.||++||..++|.. .|++||++++|+.|+||.-+++. .......|...|.+++|.|+.-.+..++. ..|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca-sSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA-SSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEe-eCC
Confidence 67888999999999999964 68999999999999999988773 33455678888999999998765433332 238
Q ss_pred ceeEEEEccCC-c--eEEEeecccccEEEEEecCC---C-----------CeEEEeeCCCcEEEEeCCCceEEEEEEecC
Q 020021 101 ESLRLLSLHDN-K--YLRYFKGHHDRVVSLSLCSS---K-----------DCFISGSLDRTVLLWDQRAEKCQGLLRVQG 163 (332)
Q Consensus 101 ~~v~v~d~~~~-~--~~~~~~~h~~~V~~v~~~~~---~-----------~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~ 163 (332)
+.|.+.+..+. . ..+....|.-.|++++|.|. | ++|+||+.|..|+||+...+.....-
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~---- 201 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER---- 201 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh----
Confidence 89999987664 1 23456789999999999986 4 67999999999999987654211000
Q ss_pred ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC----CEEEEEcCCCeEEEEEccCCe
Q 020021 164 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSFRGT 239 (332)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg----~~l~~~~~dg~i~i~d~~~~~ 239 (332)
.+++|..-++.++..|.- .++++++.||++.||.... +
T Consensus 202 -------------------------------------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~-e 243 (299)
T KOG1332|consen 202 -------------------------------------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE-E 243 (299)
T ss_pred -------------------------------------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC-c
Confidence 123454556677777753 6799999999999998652 1
Q ss_pred EeEEeeec--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 240 LLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 240 ~~~~~~~~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
....... ......+.++.||+.|+.|+.++.|..+++|.-
T Consensus 244 -~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 244 -YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred -cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1111100 112356789999999999999999999999964
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=4.8e-20 Score=161.19 Aligned_cols=297 Identities=16% Similarity=0.223 Sum_probs=209.5
Q ss_pred hcccceeEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCe----eeEEeeecccceeEEEEccCCCEEEEec
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s 95 (332)
..++.....+-|.+.|++++|+|.. +++|.|..-|.|-+||+.+.+ .+..+..|..+|.++.|+|.....++++
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 4455566678899999999999976 478999999999999995322 2344566777899999999887655554
Q ss_pred CCCCCceeEEEEccCCceEE--EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE-EEEEEecC--ceeEEEc
Q 020021 96 KNGWDESLRLLSLHDNKYLR--YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQG--RPAAAYD 170 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~~~~~~--~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~--~~~~~~~ 170 (332)
++|+++|+-|++.+..-. .+..-......++|+.+...++.+..=|...+||.+++.. ...+.++. .....+.
T Consensus 254 --SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 254 --SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred --ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 369999999998865433 3332344567888998888888888778999999987764 22222222 2233444
Q ss_pred C--CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc----CCeEeEEe
Q 020021 171 D--QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF----RGTLLSTY 244 (332)
Q Consensus 171 ~--~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~----~~~~~~~~ 244 (332)
| +..+++++.|++.++||+|+....+-.++..-.|.-.|+++.|||+|-.+++.+.|..|+|||.. .-+++.++
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 4 34566677899999999998765433344444566789999999998779999999999999972 22222222
Q ss_pred eecCCCCC--cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC-CCCce-EEeCCCeeEEEeccc-eEEEec
Q 020021 245 NVKPVSRN--STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-TEPPV-IKWTPGSLMFVTGSS-ELSFWI 319 (332)
Q Consensus 245 ~~~~~~~~--~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~-~~v~~-l~~sp~~~~l~t~~~-d~~~w~ 319 (332)
.....+.. .....+|.||-.+++.|-.-..|-|+|-..++.+..+..-. ..|.+ ..|+|-+..+++|+. -.++|.
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 21111112 33467899999999999888899999987777676653322 23444 669998886666654 366665
Q ss_pred c
Q 020021 320 P 320 (332)
Q Consensus 320 ~ 320 (332)
+
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 4
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=2.1e-20 Score=159.83 Aligned_cols=246 Identities=17% Similarity=0.273 Sum_probs=177.5
Q ss_pred eEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCC----------------CeeeEEeeecccceeEEEEccCCC
Q 020021 28 MSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPT 89 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~ 89 (332)
+...+|.+.|+-+.-++-+ .+.++=+.-|.|.|||+.. .+.+.++.+|...-..++|+|...
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3456788899988888765 5667777889999999742 234667777776667889998555
Q ss_pred EEEEecCCCCCceeEEEEccCCce---EEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCce
Q 020021 90 TVIYSSKNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 165 (332)
Q Consensus 90 ~~~~~s~~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~ 165 (332)
..+.+ +..-..|++|...++.- ..-+.+|+..|-.++|+|. ...|+|||.||+|+|||++.+.....+.
T Consensus 225 g~Lls--GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~----- 297 (440)
T KOG0302|consen 225 GRLLS--GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS----- 297 (440)
T ss_pred ccccc--CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-----
Confidence 42222 12345689999887653 2346789999999999995 4589999999999999998763211110
Q ss_pred eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC---CeEeE
Q 020021 166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLS 242 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~---~~~~~ 242 (332)
..-|.++|+.+.++..-.+|++|+.||+++|||++. ++++.
T Consensus 298 ------------------------------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 298 ------------------------------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred ------------------------------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 012346789999999888999999999999999975 45566
Q ss_pred EeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECCCCce----------------EEEecCCC--CCCceEEeCC
Q 020021 243 TYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSGKE----------------VASWMSFD--TEPPVIKWTP 303 (332)
Q Consensus 243 ~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~~~~----------------~~~~~~~~--~~v~~l~~sp 303 (332)
.|. .|..+|+++.|+|. ...||++|+|..|.|||+.-..- ...+..|. ..+..|.|++
T Consensus 342 ~fk---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~ 418 (440)
T KOG0302|consen 342 TFK---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHR 418 (440)
T ss_pred eEE---eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheecc
Confidence 666 46789999999984 56778889999999999964321 11223342 4678899999
Q ss_pred C--eeEEEeccceEEEec
Q 020021 304 G--SLMFVTGSSELSFWI 319 (332)
Q Consensus 304 ~--~~~l~t~~~d~~~w~ 319 (332)
+ |.++.|+-....+|-
T Consensus 419 QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 419 QIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred CCCCeEEEecccceeEEE
Confidence 6 444444545577764
No 137
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=6.6e-21 Score=160.39 Aligned_cols=269 Identities=17% Similarity=0.303 Sum_probs=188.1
Q ss_pred CCCcEEEEEECCC----CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 33 YNGRISSMDFHKS----SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 33 h~~~I~~i~~s~d----g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
|......++|+-| ..++|.||.-|-|||.|+.++++...+.+|...|..+.+.|+..+++.+++ -|.+||+|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S--kD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS--KDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec--CCceEEEEec
Confidence 6777888888633 468999999999999999999999999999999999999998876655543 3899999999
Q ss_pred cCCceEEEee---cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEE
Q 020021 109 HDNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 185 (332)
Q Consensus 109 ~~~~~~~~~~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 185 (332)
++..++..+. ||.+.|.+++|+.++++++|+|.|.++++|++........+... ..+.+++.. +
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s----~~~~~~~t~---------~ 232 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS----ITYSPNKTT---------R 232 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh----cccCCCCcc---------C
Confidence 9999988774 79999999999999999999999999999999754332222111 011111000 0
Q ss_pred EEECccCCCCCeeEE-EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEc-cCCeE-------------eEEeeecCCC
Q 020021 186 MFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FRGTL-------------LSTYNVKPVS 250 (332)
Q Consensus 186 vwd~~~~~~~~~~~~-~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~-~~~~~-------------~~~~~~~~~~ 250 (332)
=+-. ...++..+ +-..|...|.++.|- |.++++-+-++.|..|.. .-.+. +.++.+. ..
T Consensus 233 pfpt---~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c 306 (385)
T KOG1034|consen 233 PFPT---PKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MC 306 (385)
T ss_pred cCCc---cccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-cc
Confidence 0000 00011111 111233445555554 578888888999999987 21221 1122211 11
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE--EEecC--CCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV--ASWMS--FDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 322 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~--~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~ 322 (332)
......-+|.|-+++||.|...|.+++||+.+.+.. .++.. -.+.|...+||.|+..|+...+|..+|.|+.
T Consensus 307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 122234567788999999999999999999886653 22222 2356788999999999999999999998874
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.6e-19 Score=150.55 Aligned_cols=236 Identities=14% Similarity=0.196 Sum_probs=178.0
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC--EEEEecCCCCCc
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDE 101 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~s~~g~d~ 101 (332)
....+....|+++|.+++|+.||..+++|+.|+.+++||+.++ +..++..|..+|..+.|.+... -++++ +||.
T Consensus 62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDK 137 (347)
T KOG0647|consen 62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDK 137 (347)
T ss_pred cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEec---cccc
Confidence 3344667889999999999999999999999999999999998 6778889999999999988776 33433 5899
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-----EEEecCceeEEEcCCCeEE
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGLVF 176 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 176 (332)
++|.||..+.+++.+++ -.++|.+++.- ..+++-+..++.|.+++++.+.... .++...+..+++.+...++
T Consensus 138 TlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a 214 (347)
T KOG0647|consen 138 TLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA 214 (347)
T ss_pred ceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE
Confidence 99999999888887765 45667777654 3567778889999999996543221 1222334455666666666
Q ss_pred EEEeCCEEEEEECccCC-CCCeeEEEec------CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021 177 AVAFGGYIRMFDARKYE-KGPFDIFSVG------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 177 ~~~~~~~i~vwd~~~~~-~~~~~~~~~~------~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
.++..|.+.+..+...+ ...+.+.+.. +..-.|++++|+|.-..|++.+.||+...||-.....+.+.. .
T Consensus 215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~---~ 291 (347)
T KOG0647|consen 215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE---T 291 (347)
T ss_pred eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC---c
Confidence 67778988887765432 2223322222 112357889999999999999999999999987766655544 5
Q ss_pred CCCcceEEEECCCCCEEEEE
Q 020021 250 SRNSTLEASFSPEGMFVISG 269 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sg 269 (332)
+..++.+++|+.+|.++|-+
T Consensus 292 ~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 292 HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCccceeEecCCCCEEEEE
Confidence 66789999999999998877
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.9e-20 Score=160.96 Aligned_cols=234 Identities=14% Similarity=0.214 Sum_probs=175.8
Q ss_pred CEEEEEeCC-CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021 47 SYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (332)
Q Consensus 47 ~~l~tgs~D-~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~ 125 (332)
.|++++..- ..+.+|.+......+...--+.++.+++-+|.|.+++.+.- .+.+.+|.+.+|..+..+.+|=..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i---~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTI---SGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecc---cCcEEEEEeccccHHHHHHhhcccee
Confidence 566665544 47888988654444433334556888888999988876633 57899999999999999999999999
Q ss_pred EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC
Q 020021 126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD 205 (332)
Q Consensus 126 ~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~ 205 (332)
++.|+.|+.+|+|||.||.|.+|++..- +. .+++. .-..++.| ..|
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~l-----v~--------a~~~~------~~~p~~~f---------------~~H 173 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDL-----VS--------ADNDH------SVKPLHIF---------------SDH 173 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEee-----cc--------cccCC------Cccceeee---------------ccC
Confidence 9999999999999999999999986210 00 00000 00111222 234
Q ss_pred CCCceeEEEcCC--CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021 206 ISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG 283 (332)
Q Consensus 206 ~~~v~~v~~s~d--g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~ 283 (332)
.-+|+.+...+. ...+++++.|.++++||+..|.++.++. ....+.+++.+|-++.++.|++||.|.+.++.+.
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 445555555554 4678999999999999999999887764 3456778999999999999999999999988542
Q ss_pred c----------------eEEEecCCCC--CCceEEeCCCeeEEEeccce--EEEeccc
Q 020021 284 K----------------EVASWMSFDT--EPPVIKWTPGSLMFVTGSSE--LSFWIPD 321 (332)
Q Consensus 284 ~----------------~~~~~~~~~~--~v~~l~~sp~~~~l~t~~~d--~~~w~~~ 321 (332)
. .+..+.+|.. +|+||+.+-||.+|++|+.| +.+|++.
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 2 2445678887 99999999999999999998 7777663
No 140
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1e-20 Score=169.19 Aligned_cols=259 Identities=25% Similarity=0.352 Sum_probs=187.4
Q ss_pred ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC--------CeeeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN 97 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 97 (332)
...+++.|...|..+.|.|....|++++.|+++++|++.. -+.+.++.+|..+|.++++.+.+..++++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg--- 362 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG--- 362 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee---
Confidence 3348999999999999999999999999999999999931 34678899999999999999999999877
Q ss_pred CCCceeEEEEccCC----------ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE---EecCc
Q 020021 98 GWDESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---RVQGR 164 (332)
Q Consensus 98 g~d~~v~v~d~~~~----------~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~---~~~~~ 164 (332)
|.|++|+.|++... ....++.||++.|+.+++|+...+|+++|.|||++.|+...... .++ +..+.
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 45999999966422 12457889999999999999999999999999999999765544 122 11222
Q ss_pred eeE-EEcCCC-eEEEEEe-CCEEEEEECccCCCCCeeEEEe---cC--CCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021 165 PAA-AYDDQG-LVFAVAF-GGYIRMFDARKYEKGPFDIFSV---GG--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (332)
Q Consensus 165 ~~~-~~~~~~-~~~~~~~-~~~i~vwd~~~~~~~~~~~~~~---~~--~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~ 236 (332)
+.. .+.... ....+++ -+.-.+.++.... .+.++.. .+ ....++.+.-.|.+.+..++-.|+.|+++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s--~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS--DLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhh--heeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 211 110000 0111111 1111111211110 1111110 01 11356777888899999999999999999999
Q ss_pred CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC
Q 020021 237 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD 293 (332)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~ 293 (332)
++.+++... .|...+.++++.|+|-||++++.|+.+++|.+....++.....|.
T Consensus 520 ~~~~l~s~~---a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 520 TGKILHSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccchhee---eccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999887765 345667789999999999999999999999998877776666654
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.7e-21 Score=175.85 Aligned_cols=230 Identities=14% Similarity=0.215 Sum_probs=179.0
Q ss_pred EEEEC-CCCCEEEEEeCCCcEEEEEcCC---CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 39 SMDFH-KSSSYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 39 ~i~~s-~dg~~l~tgs~D~tv~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
.|.|+ -+.++|||++..|.|-+||+.. .+.+..|..|...++.++|++....++.+. +.|++|++||+...+..
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG--SQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG--SQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec--CCCceEEEEeeeccccc
Confidence 35554 3468999999999999999986 566678889999999999999887766653 56999999999999888
Q ss_pred EEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCC
Q 020021 115 RYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYE 193 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~ 193 (332)
.++.+....|+.|.|+| .+..|+++...|.++.||++....-
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------------------- 212 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------------------- 212 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH-------------------------------------
Confidence 99999999999999998 6779999999999999998754210
Q ss_pred CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEcC-
Q 020021 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSG- 271 (332)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs~- 271 (332)
...+.-|.+.+.++-++|++.+||+|+.|++|+|||+.+++.-..... ....++.+|.|-|+.+ +||+++.
T Consensus 213 -----~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 213 -----EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred -----HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceeeeeeeccCccchhhhhhcc
Confidence 011123556788999999999999999999999999986543322222 1235778899999865 5666644
Q ss_pred -CCcEEEEECCCCc-eEEEecCCCCCCceEEeCC-CeeEEEeccce
Q 020021 272 -DGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTP-GSLMFVTGSSE 314 (332)
Q Consensus 272 -Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp-~~~~l~t~~~d 314 (332)
|-.|+|||++-.= +..++..|...++.++|.. |...|.+++.|
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCc
Confidence 7799999995422 2356788998899999955 45677778777
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.4e-19 Score=161.24 Aligned_cols=240 Identities=14% Similarity=0.187 Sum_probs=189.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee-EEeeec-ccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL-KTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~ 111 (332)
-.+|.+++|+.+.+.||.+=.|++|-||++..+=+. ..+.++ +..+..+||.+.+ .++++ |.++.|.-||+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~---g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSS---GLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEee---cCCceEEEEecccC
Confidence 367999999999999999999999999999876544 345554 3468899999555 44443 34789999999999
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECcc
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARK 191 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~ 191 (332)
+.+..+..-.+.|++++.+|.++.++-|+.||.+.+.+...++...... +
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~--------------------------l---- 150 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS--------------------------L---- 150 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee--------------------------c----
Confidence 9999999889999999999999999999999977776665543321110 0
Q ss_pred CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec-----CCCCCcceEEEECCCCCEE
Q 020021 192 YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVSRNSTLEASFSPEGMFV 266 (332)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~v~~spdg~~l 266 (332)
.-+.+.+.+++|+|++..++.|+.||.|++||..++..++..... ......++++.|=.| ..|
T Consensus 151 -----------~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI 218 (691)
T KOG2048|consen 151 -----------MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STI 218 (691)
T ss_pred -----------ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcE
Confidence 011245778999999999999999999999999998877633211 112335567777655 478
Q ss_pred EEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEec
Q 020021 267 ISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWI 319 (332)
Q Consensus 267 ~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~ 319 (332)
++|..-|+|..||-..+..+.++..|.+.|.+|+-++++.++.+++.|-++..
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence 89999999999999999999999999999999999999999999988855443
No 143
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.4e-17 Score=149.55 Aligned_cols=287 Identities=26% Similarity=0.453 Sum_probs=212.0
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-eeEEeeeccc-ceeEEEE-ccCCCEEEEecCCCCCceeEE
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CLKTINSKKY-GVDLVCF-TSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~~~s~~g~d~~v~v 105 (332)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... .+..+.+ .+++..++... ...|+.+++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS-SSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc-CCCCccEEE
Confidence 577899999999999999999999999999999998876 6666666432 4555555 66666344433 234889999
Q ss_pred EEccC-CceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEec--CceeEEEcCCCe-EEEE-E
Q 020021 106 LSLHD-NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGL-VFAV-A 179 (332)
Q Consensus 106 ~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~-~ 179 (332)
|+... ......+.+|...|..+.|+|+++.+++++. |+.+++|+.........+..+ ......+.+.+. ++.+ +
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99988 7788889999999999999999999999986 999999999876666555442 233445555554 4444 5
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~ 258 (332)
.++.|++||.... ........++.... ...|+|++.++++++.++.+++||...... +..+ ..|...+..+.
T Consensus 219 ~d~~i~~wd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~ 291 (466)
T COG2319 219 SDGTIRLWDLSTG---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVA 291 (466)
T ss_pred CCCcEEEEECCCC---cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEE
Confidence 6899999987622 11111234444443 338999998899999999999999986654 3333 24467788889
Q ss_pred ECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEeCCCeeEEEec-cce--EEEeccccc
Q 020021 259 FSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTG-SSE--LSFWIPDLS 323 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~t~-~~d--~~~w~~~~~ 323 (332)
|+|++..+++++.|+.+++||..+........ .|...+..+.|.+++..++.+ ..| +.+|.....
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 99999999999999999999998877666655 777778999994342344444 444 555655443
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=3.3e-20 Score=163.90 Aligned_cols=236 Identities=12% Similarity=0.220 Sum_probs=183.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---eeEEee--ecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---CLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (332)
Q Consensus 32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~ 106 (332)
.|...|-++.+|...+++.||+.- -|+|||+.... .+..+. .....+..+.+.++++.++.+. .-.++.+|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG---eastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG---EASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc---ccceeeee
Confidence 588889999999989999999875 48999997432 222222 1234577888999999999874 35689999
Q ss_pred EccCCceEEE--eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEE
Q 020021 107 SLHDNKYLRY--FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYI 184 (332)
Q Consensus 107 d~~~~~~~~~--~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 184 (332)
|+......-. +....-...+++.+||.+...++..||.|.|||+..+..+..+
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf------------------------- 547 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF------------------------- 547 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-------------------------
Confidence 9987654322 2222235677899999999999999999999999766443322
Q ss_pred EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264 (332)
Q Consensus 185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~ 264 (332)
.||+..+.++.+|+||+.|=+|+.|.+|+.||++.+..+..+.. ..-|.++.++|++.
T Consensus 548 ------------------qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF----~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 548 ------------------QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF----SSQIFSLGYCPTGD 605 (705)
T ss_pred ------------------cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh----hhhheecccCCCcc
Confidence 35666788999999999999999999999999999887655432 34577888999999
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 265 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 265 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
+||.|-+.+.+.|-..... .-..+.-|..-|.+|.|++-|+.+++.+.| +..|.
T Consensus 606 WlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 606 WLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred ceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhcc
Confidence 9999999998888876443 334455688889999999999999999988 67774
No 145
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=3.3e-21 Score=179.05 Aligned_cols=275 Identities=17% Similarity=0.268 Sum_probs=199.4
Q ss_pred cHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecC
Q 020021 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK 96 (332)
Q Consensus 17 ~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 96 (332)
-.-|.++++.++.|.||-.+|.|+.|+..|.+++||++|.-++||..+++.|+....+|...++.++.+.....+++++
T Consensus 173 Pgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS- 251 (1113)
T KOG0644|consen 173 PGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS- 251 (1113)
T ss_pred cHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc-
Confidence 3458889999999999999999999999999999999999999999999999999999999999999888777776655
Q ss_pred CCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-------CceeEEE
Q 020021 97 NGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------GRPAAAY 169 (332)
Q Consensus 97 ~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-------~~~~~~~ 169 (332)
.|..|++|-+..+.++..++||++.|++++|+|-. +.+.||++++||.+-.-.. ....+ ......+
T Consensus 252 --~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~-y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 252 --NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI-YVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred --cCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc-cCCCCCCcccccceeeeec
Confidence 38899999999999999999999999999999844 8899999999998711100 00000 0011122
Q ss_pred cCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeec
Q 020021 170 DDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVK 247 (332)
Q Consensus 170 ~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 247 (332)
...+ ...++..+++-+.|.+... +.+...+..+.++.|- .+.+++-.+-.+.+|++.+|.+++...
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-- 392 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-- 392 (1113)
T ss_pred cccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--
Confidence 2222 2333334555555543221 1222223333444333 355566677788999999998877665
Q ss_pred CCCCCcceEEEECC-CCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccc
Q 020021 248 PVSRNSTLEASFSP-EGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 248 ~~~~~~~~~v~~sp-dg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
+|...+..+.++| +-+...+++.||...|||+..+-.++.. .+|. .+..-+||+||+.++....
T Consensus 393 -ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 393 -GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred -ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCC
Confidence 4556666778888 5567788999999999999888776543 4444 3556678888876655433
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.6e-19 Score=159.48 Aligned_cols=257 Identities=14% Similarity=0.238 Sum_probs=187.4
Q ss_pred EEEEEECCCCCE-EEEEeCCCcEEEEEcCC--Ceee--EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021 37 ISSMDFHKSSSY-LVTASDDESIRLYDVTA--ATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (332)
Q Consensus 37 I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~ 111 (332)
++++.|+....+ +++.+.|+.+++|.-.. ++.. ....+. ...++++.....++++ +|..++|++||+...
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~s---gG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEIS---GGQSGCVKIWDLRAK 111 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeec---cCcCceeeehhhHHH
Confidence 889999876643 46677899999997542 2221 122222 2334444444444443 466889999999987
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-ce--eEEEcCCCe--EEEEEeCCEEEE
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RP--AAAYDDQGL--VFAVAFGGYIRM 186 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~--~~~~~~~~~--~~~~~~~~~i~v 186 (332)
-+++.+++|++.|+++.++-...++|+++.-|.|.+....++.....+..+. .. -..|++..+ +..++.+|.|.+
T Consensus 112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 7888999999999999999988999999999999999988876665665432 11 234555433 333445799999
Q ss_pred EECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (332)
Q Consensus 187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~ 265 (332)
||+.... ++..+ ...|.++...|+|||... ++++-+.|..|.+||.........+.+ ..+...++|+++|.+
T Consensus 192 wDv~g~s--p~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 192 WDVQGMS--PIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTY 264 (673)
T ss_pred EeccCCC--cccch-hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceE
Confidence 9987543 22222 234667888999999775 567779999999999987666555543 235568999999999
Q ss_pred EEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCCe
Q 020021 266 VISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGS 305 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~~ 305 (332)
|+.|+..|.|.-||++..+ ++..+..|...|++|+|-|.-
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999997644 577788999999999996653
No 147
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.2e-19 Score=164.35 Aligned_cols=135 Identities=17% Similarity=0.264 Sum_probs=109.2
Q ss_pred eEecHHHHhcccceeEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeE------EeeecccceeEEEEcc
Q 020021 14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKS-SSYLVTASDDESIRLYDVTAATCLK------TINSKKYGVDLVCFTS 86 (332)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~~~~------~~~~~~~~v~~~~~~~ 86 (332)
|+|.+..-+ .+....|.+|..-|+.+.|+|= ..+|||+|.|..|+||.+..+.... .+...+..+.++.|+|
T Consensus 60 lPl~~~Gr~-~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 60 LPLTAKGRR-TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred EeccccCcc-ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeeccc
Confidence 444444432 3466778999999999999973 4689999999999999987432111 1233345678899999
Q ss_pred CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~ 152 (332)
....++++.. .+++++||+.+++.+..+.+|.+.|.+++|+.||+.|++++.|+.|+|+|.+.
T Consensus 139 TaDgil~s~a---~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 139 TADGILASGA---HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred CcCceEEecc---CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9888877654 56899999999999999999999999999999999999999999999999874
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=146.36 Aligned_cols=278 Identities=17% Similarity=0.302 Sum_probs=187.0
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCC----e--------eeEEeeec-ccceeEEEEcc-----CCCEEEEecCCC
Q 020021 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAA----T--------CLKTINSK-KYGVDLVCFTS-----HPTTVIYSSKNG 98 (332)
Q Consensus 37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~----~--------~~~~~~~~-~~~v~~~~~~~-----~~~~~~~~s~~g 98 (332)
..+..|||||.-|++-+.|..+++|++... . ...++... ...|...||.+ ++..-+++++ .
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s-s 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS-S 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec-c
Confidence 347889999999999999999999987421 0 00111111 12245566653 2222222222 3
Q ss_pred CCceeEEEEccCCceEEEee--cccccEE---EEEecCCCCeEEEeeCCCcEEEEeC-CCceEEEEEEe--c-------C
Q 020021 99 WDESLRLLSLHDNKYLRYFK--GHHDRVV---SLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQGLLRV--Q-------G 163 (332)
Q Consensus 99 ~d~~v~v~d~~~~~~~~~~~--~h~~~V~---~v~~~~~~~~l~s~s~Dg~i~iWd~-~~~~~~~~~~~--~-------~ 163 (332)
.|+-|.+||.-+|+....++ .|.++++ +++|+|||.+|..| ..+.|+++|+ +.++-...... . .
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 48899999999998777665 4666665 68999999998765 6689999998 44432211110 0 1
Q ss_pred ceeEEEcC-CCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEEccCCe-
Q 020021 164 RPAAAYDD-QGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT- 239 (332)
Q Consensus 164 ~~~~~~~~-~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~~- 239 (332)
..+..++| +...++++ +...+-++.-... -..+.+.+|...|+-+.|.+||..+.+|. .+..|-.||++...
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 12345555 33344444 5556655543322 22445668889999999999999888876 46799999997643
Q ss_pred EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC-CceEEEecCCCCCCceEEeCCCeeEEEeccceEEEe
Q 020021 240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS-GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFW 318 (332)
Q Consensus 240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w 318 (332)
.+..+..+....+--+-....|++++||+|+.||.|++||+.+ +..+..+..++..++.++++|-.-+++|+++...+-
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK 365 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence 3333332222122222335579999999999999999999988 676777888888999999999998999998876665
Q ss_pred cc
Q 020021 319 IP 320 (332)
Q Consensus 319 ~~ 320 (332)
.+
T Consensus 366 ~~ 367 (406)
T KOG2919|consen 366 YP 367 (406)
T ss_pred CC
Confidence 55
No 149
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=8.6e-19 Score=146.58 Aligned_cols=229 Identities=18% Similarity=0.251 Sum_probs=168.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (332)
Q Consensus 32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~ 111 (332)
.|..++.+.+|.++ ..+++|+.|+.||.+|+++++.. .+..|..++.+++..+....++++ |||++|++||..+.
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNK 126 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEc---ccCccEEEEecccc
Confidence 48999999999874 58889999999999999987654 466788899999999777777765 68999999998764
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-----EEEecCceeEEEcCCCeEEEEEeCCEEEE
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-----LLRVQGRPAAAYDDQGLVFAVAFGGYIRM 186 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 186 (332)
....++. ..+.|.+++.. ++.|+-|+.|..+.+||++...... .++.+.+....+...+.+++++.+|.|.+
T Consensus 127 ~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 127 VVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred ccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 4444443 33478888765 6789999999999999998654322 22333344455555667888888998766
Q ss_pred EECccC---CCCCeeEEEec---CC---CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 187 FDARKY---EKGPFDIFSVG---GD---ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 187 wd~~~~---~~~~~~~~~~~---~~---~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
=.+... +..++...++. .. .-+|++++|+|-...+++|+.||.|.+||+...+.+..+.. -...+..+
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI~sl 280 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSISSL 280 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCceEEE
Confidence 433221 11122221111 11 13689999999999999999999999999988877766542 23567789
Q ss_pred EECCCCCEEEEEcC
Q 020021 258 SFSPEGMFVISGSG 271 (332)
Q Consensus 258 ~~spdg~~l~sgs~ 271 (332)
+|+.||..||.|+.
T Consensus 281 sfs~dG~~LAia~s 294 (323)
T KOG1036|consen 281 SFSMDGSLLAIASS 294 (323)
T ss_pred EeccCCCeEEEEec
Confidence 99999999999974
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1e-18 Score=164.36 Aligned_cols=239 Identities=14% Similarity=0.222 Sum_probs=181.6
Q ss_pred ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC-ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021 74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~-~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~ 152 (332)
+|..+-+.+|+.+++.+++++.+ |+.||+|+..+. +...++..|...|.+++.. +.+|++++.+++|..+.+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgs---dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGS---DGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecC---CCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 56667788999999998877754 889999987665 4444454477888887654 45999999999999998866
Q ss_pred ceEEE---EEEecCceeEEEcCCCeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC
Q 020021 153 EKCQG---LLRVQGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228 (332)
Q Consensus 153 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg 228 (332)
+.... .+.++.. ..+++.++..++++ .|-.|++.++..... ...+.+|.++|..+.|+|.+.++|+.+.||
T Consensus 86 ~~~~~iL~Rftlp~r-~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 86 GEEDTILARFTLPIR-DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred CCccceeeeeeccce-EEEEecCCcEEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 55432 3333333 34555566555555 566899988765332 345567889999999999999999999999
Q ss_pred eEEEEEccCCeEeEEeeec-----CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEe
Q 020021 229 HIHVLDSFRGTLLSTYNVK-----PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKW 301 (332)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~ 301 (332)
.|++||+..+.+...+... ......+..++|+|+|..+|....|++|.+++..+......+. .+.+.+.++.|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 9999999988776655321 1113455678999999999999999999999999888766653 34445899999
Q ss_pred CCCeeEEEeccce--EEEecccc
Q 020021 302 TPGSLMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 302 sp~~~~l~t~~~d--~~~w~~~~ 322 (332)
+|.|+++++++.+ +.+|+++.
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999877 88899884
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=6.2e-18 Score=154.71 Aligned_cols=289 Identities=16% Similarity=0.248 Sum_probs=196.1
Q ss_pred ceeEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEEcCC--CeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 26 VGMSFRDYNGRISSMDFHKSSS---YLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~---~l~tgs~D~tv~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
...+++||.++|+|+.+-|+.. ++++|+.|+.|++|.+.. ..++.++.+| ...++|+......+... ..|
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~--~~~~~cv~a~~~~~~~~---~ad 120 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH--CKECVCVVARSSVMTCK---AAD 120 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCc--ceeEEEEEeeeeEEEee---ccC
Confidence 3456899999999999998887 899999999999999873 2345555553 34444544433322221 125
Q ss_pred ceeEEEEccCCc--------------------------------------------------eEEEeecccccEEEEEec
Q 020021 101 ESLRLLSLHDNK--------------------------------------------------YLRYFKGHHDRVVSLSLC 130 (332)
Q Consensus 101 ~~v~v~d~~~~~--------------------------------------------------~~~~~~~h~~~V~~v~~~ 130 (332)
+++++||.+..+ ....+.||.+.|.+++|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 666666663332 124578999999999998
Q ss_pred CCCC---eEEEeeCCCcEEEEeCCCce---------------------EEEEEEe--------cCc----eeEEEcCCC-
Q 020021 131 SSKD---CFISGSLDRTVLLWDQRAEK---------------------CQGLLRV--------QGR----PAAAYDDQG- 173 (332)
Q Consensus 131 ~~~~---~l~s~s~Dg~i~iWd~~~~~---------------------~~~~~~~--------~~~----~~~~~~~~~- 173 (332)
..+. +|+|+|+|..||+|.+.-+. +...++. .+. ....+++.+
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 6544 89999999999999764221 1111110 011 134455666
Q ss_pred eEEEEEeCCEEEEEECccCCCCCeeE---EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021 174 LVFAVAFGGYIRMFDARKYEKGPFDI---FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250 (332)
Q Consensus 174 ~~~~~~~~~~i~vwd~~~~~~~~~~~---~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (332)
.+++++.|.++.+|.-.....--... -.++|.......+-|+|++..+++-+.-|-.++|.......-.......+|
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 57777789999999754321101111 123344445778899999999999999999999983322211111223467
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce-----EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE-----VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
...+..++|+|.|.||+|+|.|-+-|+|-.- |+. +....-|....+|++|-+...+|++|..+ ++.+.+
T Consensus 361 ~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 361 VDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred cccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence 8889999999999999999999999999653 222 33446688889999999877788888776 555543
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=8.9e-19 Score=150.80 Aligned_cols=246 Identities=14% Similarity=0.197 Sum_probs=173.6
Q ss_pred EeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 29 SFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
.+.||+++|..++|+|-+ ..|||||.|.+|.||.+-.+ +.+..+.+|...|-.+.|+|....++.++ |.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa--g~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA--GSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc--cCC
Confidence 368999999999999855 67899999999999998532 34567889999999999999998877664 569
Q ss_pred ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec--C-ceeEEEcCCCeEEE
Q 020021 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--G-RPAAAYDDQGLVFA 177 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 177 (332)
++|.+||+.+++.+-++. |.+.|.+++|+.+|.+|+|.+.|+.||+||.++++.+.....+ . ..-+++-.++.+++
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999888888 9999999999999999999999999999999999877655222 1 23355556677888
Q ss_pred EEe----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE-EEEEcCCCeEEEEEccCCeE-eEEeeecCCCC
Q 020021 178 VAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSR 251 (332)
Q Consensus 178 ~~~----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~-l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~ 251 (332)
.++ +..+.+||-.+.+.+ .....+.. .+.|.-==+.+|-.+ +++|-.|+.|+-|.+..-.. ++-+. .....
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP-~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln-~f~S~ 309 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEP-IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN-TFSSK 309 (472)
T ss_pred eccccccccceeccCcccccCc-ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec-ccccC
Confidence 776 468999998776543 33332211 122222234566554 46777899999999765432 22221 11222
Q ss_pred CcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
.+-..+.|.|.-.. ..+.....|.|.+.+
T Consensus 310 epQRG~g~mPKRGl--~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 310 EPQRGMGFMPKRGL--DVSKCEIARFYKLHE 338 (472)
T ss_pred Cccccccccccccc--cchHHHHHHHHHhhc
Confidence 33445677775322 223333344444433
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=153.57 Aligned_cols=206 Identities=17% Similarity=0.312 Sum_probs=150.8
Q ss_pred cccceeEEEEccCCCEEEEecCCCCCceeEEEEccC----------------CceEEEeecccccEEEEEecCC-CCeEE
Q 020021 75 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----------------NKYLRYFKGHHDRVVSLSLCSS-KDCFI 137 (332)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~----------------~~~~~~~~~h~~~V~~v~~~~~-~~~l~ 137 (332)
|...+.++...+.++..++++- .-.+.|.|||+.. .+++.++.+|...-.+++|||- ...|+
T Consensus 150 h~g~~NRvr~~~~~~~~~~asw-se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASW-SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred cccccceeeecccCCcceeeee-cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 3445566666666665555543 2257899999743 2357889999999999999993 33688
Q ss_pred EeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021 138 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217 (332)
Q Consensus 138 s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 217 (332)
||..-+.|++|...++... +. .....+|...|..+++||.
T Consensus 229 sGDc~~~I~lw~~~~g~W~--------------------------------vd--------~~Pf~gH~~SVEDLqWSpt 268 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK--------------------------------VD--------QRPFTGHTKSVEDLQWSPT 268 (440)
T ss_pred cCccccceEeeeeccCcee--------------------------------ec--------CccccccccchhhhccCCc
Confidence 9988899999987665321 00 0011245667888999996
Q ss_pred C-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC---CceEEEecCCC
Q 020021 218 G-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS---GKEVASWMSFD 293 (332)
Q Consensus 218 g-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~---~~~~~~~~~~~ 293 (332)
. .++++++.||.|+|||++.+.....+..+ .|..-|+-+.|+-.-.+||+|+.||+++|||++. ++.+.++..|.
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEee-ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 5 68899999999999999988433222222 3556777889999888999999999999999965 56688999999
Q ss_pred CCCceEEeCCCe-eEEEeccce--EEEecccc
Q 020021 294 TEPPVIKWTPGS-LMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 294 ~~v~~l~~sp~~-~~l~t~~~d--~~~w~~~~ 322 (332)
++|++|.|+|.. ..++.++.| +.+|+..+
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999954 344444444 99998654
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=152.58 Aligned_cols=245 Identities=14% Similarity=0.264 Sum_probs=188.3
Q ss_pred CCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeE--Eeeec-ccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 33 YNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLK--TINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 33 h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~--~~~~~-~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
-..+|.+..|.|+|. .+++++.-..+..||+.+.+..+ ...++ ...+.....++++.++++... .+.|.+.-.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLha 332 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHA 332 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehh
Confidence 357899999999998 89999999999999998876543 23333 234667788899998887654 567999988
Q ss_pred cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc---eeEEEcCCCeEEEEEeC-CEE
Q 020021 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVFAVAFG-GYI 184 (332)
Q Consensus 109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~i 184 (332)
++++.+.+++ -.+.|..+.|+.|++.|+..+.+|.|.+||++.++|+..+.-.+. ...+.+.++.+++++++ |.|
T Consensus 333 kT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 333 KTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred hhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence 8988887776 567899999999999999999999999999999999888865442 23455677778888875 899
Q ss_pred EEEECccCC--CCCeeEEEecCCCCCceeEEEcCCCCEEEEEc--CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021 185 RMFDARKYE--KGPFDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 185 ~vwd~~~~~--~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s 260 (332)
.|||..+.. ..+..+..+..-...|+.+.|+||+++++.++ .+..+++.-+.+......+-.....-..+++++||
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 999954321 11222222223345789999999999988776 45678888777766555554333344567899999
Q ss_pred CCCCEEEEEcCCCcEEEEECC
Q 020021 261 PEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd~~ 281 (332)
|.+.|||-|.++|.+.+|.+.
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 999999999999999999874
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-17 Score=152.61 Aligned_cols=254 Identities=17% Similarity=0.199 Sum_probs=194.8
Q ss_pred ccceeEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021 24 MEVGMSFRDYN-GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (332)
Q Consensus 24 ~~~~~~l~~h~-~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 102 (332)
--+.+.+.|+. ..|.+|+|+ ++..|+|.+.+|+|.-||+.+++++..+......+..++.+|..+.+..++. |+.
T Consensus 58 w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGv 133 (691)
T KOG2048|consen 58 WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGV 133 (691)
T ss_pred ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---Cce
Confidence 34556677765 669999999 5678999999999999999999999999888888999999999999998876 566
Q ss_pred eEEEEccCCceE--EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021 103 LRLLSLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180 (332)
Q Consensus 103 v~v~d~~~~~~~--~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (332)
+...+...++.. ..|...+++|.++.|+|++..+++|+.||.|++||...+.......+.. ...+.
T Consensus 134 l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~------------d~l~k 201 (691)
T KOG2048|consen 134 LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL------------DRLSK 201 (691)
T ss_pred EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc------------ccccc
Confidence 777777776543 3455677999999999999999999999999999998776544222110 00011
Q ss_pred CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC
Q 020021 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 260 (332)
Q Consensus 181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s 260 (332)
...+-+|. +.|-.|+ .+++|...|+|+.||...+++++.+. .|...+.+++.+
T Consensus 202 ~~~~iVWS-----------------------v~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~ 254 (691)
T KOG2048|consen 202 REPTIVWS-----------------------VLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVA 254 (691)
T ss_pred CCceEEEE-----------------------EEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEc
Confidence 12233332 3344454 47899999999999999999988776 456778899999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCce--EE--EecCCCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021 261 PEGMFVISGSGDGSVYAWSVRSGKE--VA--SWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 322 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd~~~~~~--~~--~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~ 322 (332)
+++.++.+++.|+.|.-+...+.+. +. ....|...+.+++..++ .+++|+.|..+-....
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 9999999999999999888766533 22 23467777889998777 8889998866655443
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3e-16 Score=143.31 Aligned_cols=291 Identities=25% Similarity=0.438 Sum_probs=209.9
Q ss_pred ceeEeccCC-CcEEEEEE-CCCCC-EEEEEeC-CCcEEEEEcCC-CeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 26 VGMSFRDYN-GRISSMDF-HKSSS-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 26 ~~~~l~~h~-~~I~~i~~-s~dg~-~l~tgs~-D~tv~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
....+.++. ..+..+.+ ++++. +++..+. |+++++||... ......+..|...+..++|++++..++.+.. .|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~ 177 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LD 177 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CC
Confidence 445555544 37888888 88887 5555455 99999999998 7888888899989999999999986666532 48
Q ss_pred ceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEE-EEEecCce-eEEEcCCC-eEE
Q 020021 101 ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG-LLRVQGRP-AAAYDDQG-LVF 176 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~ 176 (332)
+.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|++|++||.+.+.... .+..+... ...+.+.+ .++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (466)
T COG2319 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA 257 (466)
T ss_pred CceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEE
Confidence 8999999999888999999999999999999988 66666999999999988666555 33322221 22566665 555
Q ss_pred EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE
Q 020021 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE 256 (332)
Q Consensus 177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 256 (332)
+++.++.+++|+++.... ..... .++...+..+.|+|++..+++++.|+.+.+||........... ...+...+..
T Consensus 258 ~~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 333 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSS-LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSS 333 (466)
T ss_pred EecCCCcEEEeeecCCCc-EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEE
Confidence 566789999999986543 12222 3456788899999988888888888899999988776655443 1133445777
Q ss_pred EEECCCCCEEEEE-cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEe-ccce--EEEecccccc
Q 020021 257 ASFSPEGMFVISG-SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVT-GSSE--LSFWIPDLSK 324 (332)
Q Consensus 257 v~~spdg~~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t-~~~d--~~~w~~~~~~ 324 (332)
+.|.+++..++.+ ..|+.+++|++............. .+..+.+++ ...... +..+ +.+|+.....
T Consensus 334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred EEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 8884443555555 788999999998876333332222 278888988 544443 3443 7888765433
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.5e-18 Score=151.40 Aligned_cols=235 Identities=16% Similarity=0.206 Sum_probs=162.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCee---eEE------------------eeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 46 SSYLVTASDDESIRLYDVTAATC---LKT------------------INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~---~~~------------------~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
|+|+|.|..|..|-|||+.-... ..+ ..+|...|..+++...-+.++++ ++.|.+|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS--gsaD~TV~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS--GSADKTVK 269 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe--cCCCceEE
Confidence 68999999999999999852111 011 12455566667777666666554 35699999
Q ss_pred EEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEE-EEEEec-CceeEEEcC-CCeEEEEE-
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQ-GRPAAAYDD-QGLVFAVA- 179 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~~- 179 (332)
+||+.++++..++..|.+.|.++.|+| .+..|++||+|+++++.|.+...+. ...+.. ......+.+ ....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999999999999999999998 5679999999999999999853322 122222 223344444 33444444
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
.||+++-+|+|+...+ .+.+..|..+|..+++++.- .++++++.|+.+++|+............ ...-+...+.+
T Consensus 350 ddG~v~~~D~R~~~~~---vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~c~~ 425 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKP---VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLHCFA 425 (463)
T ss_pred CCceEEeeecCCCCCc---eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-cccccceeecc
Confidence 5799999999986533 44555577789999998865 4677889999999999754332111110 00011122345
Q ss_pred ECCCC-CEEEEEcCCCcEEEEECCCCceE
Q 020021 259 FSPEG-MFVISGSGDGSVYAWSVRSGKEV 286 (332)
Q Consensus 259 ~spdg-~~l~sgs~Dg~i~vWd~~~~~~~ 286 (332)
+.|+- -++|.|+.-+.++|||+.+...+
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhH
Confidence 55654 46677788888999999886654
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=145.33 Aligned_cols=240 Identities=14% Similarity=0.193 Sum_probs=170.8
Q ss_pred eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEE
Q 020021 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 158 (332)
Q Consensus 79 v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 158 (332)
..++.|++-|..++.++. |+.+.+||+.+...-+.+.+|..+|.+++|+++|+.|+|+|.|..|++||+..+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 467889999999999886 67899999999888888999999999999999999999999999999999999998887
Q ss_pred EEecC-ceeEEEcCC--CeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCC-CceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021 159 LRVQG-RPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLD 234 (332)
Q Consensus 159 ~~~~~-~~~~~~~~~--~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~v~~s~dg~~l~~~~~dg~i~i~d 234 (332)
++.+. ...+.++|. ...+++-.+..-.+.++.... .........++.. ......|.+.|+++.+|+..|.+.++|
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 77654 234455542 234444444333444433211 0000000011111 122235889999999999999999999
Q ss_pred ccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc------eE---EEec--CCCCCCceEEeCC
Q 020021 235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK------EV---ASWM--SFDTEPPVIKWTP 303 (332)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~------~~---~~~~--~~~~~v~~l~~sp 303 (332)
..+-+++..++... ...+-.+.|+..|++|+.-+.|+.||.++++.-. .+ +.+. .....=++++||.
T Consensus 182 a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 182 AETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred cchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 99999888887543 2456678899999999999999999999986311 11 1111 0111225688999
Q ss_pred CeeEEEeccce---EEEecccccc
Q 020021 304 GSLMFVTGSSE---LSFWIPDLSK 324 (332)
Q Consensus 304 ~~~~l~t~~~d---~~~w~~~~~~ 324 (332)
+|.+++.++.- +.+|.-....
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred CccEEEeccccceeEEEEecCCcc
Confidence 99999888753 7777654433
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=3.3e-18 Score=147.78 Aligned_cols=277 Identities=18% Similarity=0.244 Sum_probs=183.4
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC--------C--------CeeeEEeeecccceeEEEEcc
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT--------A--------ATCLKTINSKKYGVDLVCFTS 86 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~ 86 (332)
+.+.+.+|.+|+.+|+++.|+|+|++||||++++.+.+|-.. + -.....+.+|...+..++|++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 567778899999999999999999999999999999999765 2 122345667777888899999
Q ss_pred CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee
Q 020021 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 166 (332)
Q Consensus 87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~ 166 (332)
++..+++++. |+++++||+..|+....+.+|...|..++|.|-+.++++-|.|...+..++...+..........+.
T Consensus 134 d~~~l~s~s~---dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 134 DSNFLVSGSV---DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CCceeeeeec---cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 9999998864 9999999999999999999999999999999999999999999976766654433222111100000
Q ss_pred EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC----CC-----eEEEEEccC
Q 020021 167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM----EG-----HIHVLDSFR 237 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~----dg-----~i~i~d~~~ 237 (332)
....+ ......|++.-++.. .=...++|+|||.++++... .+ +.++++.
T Consensus 211 ~~~~~-------~e~~s~rLfhDeTlk-------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr-- 268 (434)
T KOG1009|consen 211 KAFNE-------REGKSTRLFHDETLK-------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR-- 268 (434)
T ss_pred cccCC-------CCcceeeeeecCchh-------------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc--
Confidence 00000 001123443322111 11345688999998876431 12 2344432
Q ss_pred CeEeEE-eeecCCCCCcceEEEECC------------------CCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCc
Q 020021 238 GTLLST-YNVKPVSRNSTLEASFSP------------------EGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPP 297 (332)
Q Consensus 238 ~~~~~~-~~~~~~~~~~~~~v~~sp------------------dg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~ 297 (332)
+.+.. ...-+....+...+.|+| .+..+|.++ -..++|+|.++.+++... .-|=..++
T Consensus 269 -k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iT 346 (434)
T KOG1009|consen 269 -KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAIT 346 (434)
T ss_pred -ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeec
Confidence 21111 000112223333444443 334455554 457999999886665432 23556899
Q ss_pred eEEeCCCeeEEEeccce--EEEecccccccc
Q 020021 298 VIKWTPGSLMFVTGSSE--LSFWIPDLSKLG 326 (332)
Q Consensus 298 ~l~~sp~~~~l~t~~~d--~~~w~~~~~~~~ 326 (332)
.++|++||..|+..|-| +.+-..+...||
T Consensus 347 Diaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 347 DIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 99999999888777766 666555555555
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=5.4e-18 Score=148.47 Aligned_cols=256 Identities=13% Similarity=0.168 Sum_probs=175.3
Q ss_pred EcCCCeeeEEeeecccceeEEEEccCCC-EEEE-ecCCCCCceeEEEEccCCc----eEEEeecccccEEEEEecC-CCC
Q 020021 62 DVTAATCLKTINSKKYGVDLVCFTSHPT-TVIY-SSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS-SKD 134 (332)
Q Consensus 62 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~s~~g~d~~v~v~d~~~~~----~~~~~~~h~~~V~~v~~~~-~~~ 134 (332)
|+.+-.....+.-+...|++++|+|..+ .+++ +.. -++|-+||+.+.+ -+..+..|..+|.++.|+| +..
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK---~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDK---GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS 248 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccC---CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh
Confidence 3334444455666677899999999887 4444 433 4689999994222 3567788999999999999 556
Q ss_pred eEEEeeCCCcEEEEeCCCceEEEEEEecCcee----EEE-cCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCc
Q 020021 135 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA----AAY-DDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 209 (332)
Q Consensus 135 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v 209 (332)
++++.|+||+|++=|++.......+....... ..+ ..++.++.+..-|...+||.|..... + .....|...|
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-~--~~~~lh~kKI 325 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-Y--ENLRLHKKKI 325 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-c--hhhhhhhccc
Confidence 99999999999999998765443333321111 111 13445666665568999999875432 2 2222344578
Q ss_pred eeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEE-eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC----CC
Q 020021 210 NVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR----SG 283 (332)
Q Consensus 210 ~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~----~~ 283 (332)
..++++|-. .++++++.|++.+|||++.-..... +-....|...|.++.|||++-.|+|.+.|.+|+|||.. .-
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 999999976 5788999999999999976433221 11122467888899999998889999999999999983 22
Q ss_pred ceEEEecCCCC----CC--ceEEeCCCeeEEEeccce--EEEecccccc
Q 020021 284 KEVASWMSFDT----EP--PVIKWTPGSLMFVTGSSE--LSFWIPDLSK 324 (332)
Q Consensus 284 ~~~~~~~~~~~----~v--~~l~~sp~~~~l~t~~~d--~~~w~~~~~~ 324 (332)
....++ .|+. .. ..-.|.|+..+++.|-.- +-+++...++
T Consensus 406 ~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 406 EPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred Ccccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 222332 2332 22 335699999999888653 7777776655
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=6.6e-17 Score=135.36 Aligned_cols=243 Identities=14% Similarity=0.249 Sum_probs=166.0
Q ss_pred ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc----eEEEeecccccEEEEEecC--CCCeEEEeeCCCcEEE
Q 020021 74 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLL 147 (332)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~----~~~~~~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~i 147 (332)
+|..=|+++.|.+.|+.++++++ |+++++||.+... +....+.|.+.|..+.|.+ -|..+|++|.|++++|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 45566899999999999999986 8999999965433 4556789999999999874 4889999999999999
Q ss_pred EeCC--CceE-----EEEEEec----CceeEEEcC--CCe-EEEEEeCCEEEEEECccCCCC-------Cee--EEEecC
Q 020021 148 WDQR--AEKC-----QGLLRVQ----GRPAAAYDD--QGL-VFAVAFGGYIRMFDARKYEKG-------PFD--IFSVGG 204 (332)
Q Consensus 148 Wd~~--~~~~-----~~~~~~~----~~~~~~~~~--~~~-~~~~~~~~~i~vwd~~~~~~~-------~~~--~~~~~~ 204 (332)
|.-. ..++ .....+. ....+.|.| -|. +.+++.||.+|+|+....-.- .+. ....+.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9742 1111 1111111 122334444 344 445557999999986432110 000 001112
Q ss_pred CCCCceeEEEcCCC---CEEEEEcCC-----CeEEEEEccCCe-EeEEeeecCCCCCcceEEEECCCC----CEEEEEcC
Q 020021 205 DISDANVVKFSNDG---RLMLLTTME-----GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEG----MFVISGSG 271 (332)
Q Consensus 205 ~~~~v~~v~~s~dg---~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~spdg----~~l~sgs~ 271 (332)
+.....++.++|.. .+|++|+.+ +.++||....+. ......--+.+..+|..++|.|+- ..||+|+.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 22355667777643 578888777 478888765432 222222223677899999999963 68999999
Q ss_pred CCcEEEEECCCC--------------------ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 272 DGSVYAWSVRSG--------------------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 272 Dg~i~vWd~~~~--------------------~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
|| |+||.+... +.+..+-.|+++|+.+.|+-.|..|++.+.| +++|--
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99 999999731 1244567899999999999999999999888 777743
No 162
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.1e-19 Score=154.71 Aligned_cols=299 Identities=19% Similarity=0.292 Sum_probs=213.7
Q ss_pred HHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCC--EEEEec
Q 020021 19 EILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT--TVIYSS 95 (332)
Q Consensus 19 ~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~s 95 (332)
.+++.+.+.+.|..|.|.|+.|.|...|..|+|||+|..|.+||-..+.....+. +|...|.-..|.|... .++.++
T Consensus 127 ~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 127 LFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred HHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence 4456678888999999999999999999999999999999999988777665553 4555555555666443 345443
Q ss_pred CCCCCceeEEEEccCCce---EEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEec--Cc-----
Q 020021 96 KNGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GR----- 164 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~----- 164 (332)
.|+++|+-.+-...+ .+.+..|.++|..++.-|+ ...|.|++.|+.+.-.|++.+.+...+... ..
T Consensus 207 ---~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 207 ---RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred ---ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence 488999887544333 3456789999999998884 568999999999999999887665444221 11
Q ss_pred -eeEEEcC-CCeEEE-EEeCCEEEEEECccCCCC----CeeEE----EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEE
Q 020021 165 -PAAAYDD-QGLVFA-VAFGGYIRMFDARKYEKG----PFDIF----SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 233 (332)
Q Consensus 165 -~~~~~~~-~~~~~~-~~~~~~i~vwd~~~~~~~----~~~~~----~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~ 233 (332)
.....+| +...++ ++.+...|+||.|..... .++.+ .+......|++++||.++.-++++-.|-.|++|
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 1222333 333444 446789999998865432 11111 112334578999999999999999999999999
Q ss_pred EccCCeE----------eEEeeecCCCCC--cceEE-EECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEE
Q 020021 234 DSFRGTL----------LSTYNVKPVSRN--STLEA-SFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK 300 (332)
Q Consensus 234 d~~~~~~----------~~~~~~~~~~~~--~~~~v-~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~ 300 (332)
....+.- ........+|.+ .|-.+ -|.|...|+++||.-|.|.||+-.+++.+..+.+...-|+||.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence 6432211 001110113333 23334 4789999999999999999999999998887776666889999
Q ss_pred eCCCeeEEEeccc--eEEEecc
Q 020021 301 WTPGSLMFVTGSS--ELSFWIP 320 (332)
Q Consensus 301 ~sp~~~~l~t~~~--d~~~w~~ 320 (332)
-+|--=.|++.+- |++||.|
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CCCCCchhhccCCccceeeecC
Confidence 9998888888775 5999998
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=3.7e-18 Score=139.99 Aligned_cols=281 Identities=12% Similarity=0.188 Sum_probs=179.5
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~ 106 (332)
..|++|.+.|+++.|..++ +|.+|..-|.|++|++.+...+-.+. .+...++.+--.|++ .+.+ .|.|..+.+|
T Consensus 8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~t---qgRd~~L~lw 82 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDT---QGRDPLLILW 82 (323)
T ss_pred eEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhh---cCCCceEEEE
Confidence 4678999999999998866 58899999999999999877766666 344445555444442 2222 3668999999
Q ss_pred EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-cEEEE-----------eCCCceEEEEEEec--Cc--eeEEEc
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLW-----------DQRAEKCQGLLRVQ--GR--PAAAYD 170 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-~i~iW-----------d~~~~~~~~~~~~~--~~--~~~~~~ 170 (332)
++.-+.++.. |.-.++++.||+.. +...+... ..-.+ |............+ .+ ...+.+
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred EccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 9988765543 55667777777532 11111111 01111 11100000000000 00 011111
Q ss_pred ----CCC-eEEEEEe-CCEEEEEECccCCC------CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-
Q 020021 171 ----DQG-LVFAVAF-GGYIRMFDARKYEK------GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR- 237 (332)
Q Consensus 171 ----~~~-~~~~~~~-~~~i~vwd~~~~~~------~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~- 237 (332)
... .++.+++ +|.+-+||+..... ..........+..++.++.|.+.-..=++++.+.++..|.+..
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 122 3444444 69999999875311 0011122334556788888876555556777788888887643
Q ss_pred -CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--
Q 020021 238 -GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE-- 314 (332)
Q Consensus 238 -~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d-- 314 (332)
+.+....+.. ..+..+..+..-||++.+||++.|+.||||+.++.+.+..++.|.+.|++++|+||...++.++.|
T Consensus 238 ~gslq~~~e~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 238 TGSLQIRKEIT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred cCcccccceEE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 3332222111 123345567888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 020021 315 LSFWI 319 (332)
Q Consensus 315 ~~~w~ 319 (332)
+.+|.
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 66664
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=1.2e-18 Score=146.89 Aligned_cols=225 Identities=20% Similarity=0.323 Sum_probs=161.3
Q ss_pred cccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEe---eecccceeEEEEccCCCEEEEecCCC
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNG 98 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~s~~g 98 (332)
+.++.+.++||.++|+.|.|.|+. ++++++|.|.+||+|++.+..|+..+ .+|.+.|.++.|++++.+++++ |
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc---G 200 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC---G 200 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeecc---C
Confidence 356678899999999999999986 68899999999999999999999876 4688899999999999988765 6
Q ss_pred CCceeEEEEccCCce---------------------------E-EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021 99 WDESLRLLSLHDNKY---------------------------L-RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 150 (332)
Q Consensus 99 ~d~~v~v~d~~~~~~---------------------------~-~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~ 150 (332)
+|.++++|++...+. . .+-.-|.++|-++.|- |++++|-|.++.|..|.+
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP 278 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence 799999999973221 0 0223477777777775 488999999999999975
Q ss_pred -CCceEEEEEEecCceeEEEcCCCeEEEEEeC-CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC
Q 020021 151 -RAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 228 (332)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg 228 (332)
+-+........+ .....+..-++ ....+|= .-.+|.|-++.+|.+...|
T Consensus 279 gkl~e~~~~vkp~--------es~~Ti~~~~~~~~c~iWf---------------------irf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 279 GKLEESIHNVKPP--------ESATTILGEFDYPMCDIWF---------------------IRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred chhhhhhhccCCC--------ccceeeeeEeccCccceEE---------------------EEEeecHHHHHHhhccCCC
Confidence 211111111000 00011111111 1111221 1235677789999999999
Q ss_pred eEEEEEccCCeEe-EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021 229 HIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 229 ~i~i~d~~~~~~~-~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
.|++||++..+.. .+-..++.....+...+||.||.+|+...+|++|.-||.-
T Consensus 330 ~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999876552 2222233445677788999999999999999999999864
No 165
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-18 Score=153.87 Aligned_cols=233 Identities=18% Similarity=0.282 Sum_probs=166.5
Q ss_pred cHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCC-EEEEe
Q 020021 17 SEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPT-TVIYS 94 (332)
Q Consensus 17 ~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~ 94 (332)
..++++.+.+.+.|.||+|.|+|+.|+.+|.+|++||+|..+.|||....+.++.+. +|...|.++.|.|... .++.+
T Consensus 33 ~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 33 NSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred ccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe
Confidence 456788899999999999999999999999999999999999999999888888885 5777899999998655 33333
Q ss_pred cCCCCCceeEEEEccCC----------ceEEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceE-EEEEEec
Q 020021 95 SKNGWDESLRLLSLHDN----------KYLRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKC-QGLLRVQ 162 (332)
Q Consensus 95 s~~g~d~~v~v~d~~~~----------~~~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~ 162 (332)
+ +| |..|+|+|+... +....+..|+++|..++..|++ ..|.+++.||+|+.+|++.... ......+
T Consensus 113 g-Ag-Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 113 G-AG-DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred c-cC-cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 2 23 889999999752 2356678899999999999987 7999999999999999986431 1000000
Q ss_pred CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCC---
Q 020021 163 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG--- 238 (332)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~--- 238 (332)
. . +. .+.++.....++++||.. .++++|+.+--.++||.+.-
T Consensus 191 ~---------------------~---l~----------ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks 236 (758)
T KOG1310|consen 191 S---------------------I---LV----------NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKS 236 (758)
T ss_pred H---------------------H---HH----------HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccC
Confidence 0 0 00 000111234567888866 57788889989999994211
Q ss_pred -----e----------EeEEeeecCCCC-----------CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021 239 -----T----------LLSTYNVKPVSR-----------NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA 287 (332)
Q Consensus 239 -----~----------~~~~~~~~~~~~-----------~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~ 287 (332)
. .+.-| .+.|. .+++-+.|+|+|..|+..-....|+++|+..++.+.
T Consensus 237 ~~s~~~~~~~pp~~~~cv~yf--~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 237 FRSDGTMNTCPPKDCRCVRYF--SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCCccccCCCCcccchhhee--cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0 01001 01111 123447899999888766555689999998877654
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=2.3e-15 Score=135.67 Aligned_cols=267 Identities=10% Similarity=0.122 Sum_probs=167.5
Q ss_pred EEEEeCCCcEEEEEcCC-Ce--eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-Cce--EEEeecccc
Q 020021 49 LVTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--LRYFKGHHD 122 (332)
Q Consensus 49 l~tgs~D~tv~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~~--~~~~~~h~~ 122 (332)
.++...|++|++||+.+ ++ .++++.. ......++++|+++.+++++. .++.|.+|++.. ++. +.... ...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeec-CCC
Confidence 45567899999999964 33 4455543 234567899999988877653 267899999863 332 12111 223
Q ss_pred cEEEEEecCCCCeEEEeeC-CCcEEEEeCCCc-e---EEEEEEe-cCceeEEEcCCCeEEEE-E-eCCEEEEEECccCCC
Q 020021 123 RVVSLSLCSSKDCFISGSL-DRTVLLWDQRAE-K---CQGLLRV-QGRPAAAYDDQGLVFAV-A-FGGYIRMFDARKYEK 194 (332)
Q Consensus 123 ~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~-~---~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~i~vwd~~~~~~ 194 (332)
....+.|+|+++++++++. ++.|.+||+.+. . ....+.. .......+++++..+.+ . .++.|.+||+.....
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 4678999999998887764 889999998642 1 1122111 11234456777655543 3 358999999865211
Q ss_pred C-C--eeEEEecCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccC--Ce--EeEEeeecCC---CCCcceEEEECCCC
Q 020021 195 G-P--FDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GT--LLSTYNVKPV---SRNSTLEASFSPEG 263 (332)
Q Consensus 195 ~-~--~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~---~~~~~~~v~~spdg 263 (332)
- . ....... .......++|+|||+++.+... ++.|.+||+.. ++ .+..+...+. .......+.|+|||
T Consensus 161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 0 0 0001111 1123567899999999877665 89999999873 33 2333322111 11123358899999
Q ss_pred CEEEEEc-CCCcEEEEECCCCce----EEEecCCCCCCceEEeCCCeeEEEeccc---eEEEeccc
Q 020021 264 MFVISGS-GDGSVYAWSVRSGKE----VASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPD 321 (332)
Q Consensus 264 ~~l~sgs-~Dg~i~vWd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~t~~~---d~~~w~~~ 321 (332)
++++++. .+++|.+|++.+... +..... ...+..+.|+|||++|.++.. .+.+|..+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999985 478999999965332 222222 234678999999988776543 38888764
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=5.7e-17 Score=148.00 Aligned_cols=268 Identities=16% Similarity=0.240 Sum_probs=195.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 115 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~ 115 (332)
.|..++|-|||..|+-+..| .+.|||++.|..++++++|...|.+++++.+|+.++++++ |..|.+|+-+-...++
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccceee
Confidence 79999999999988766655 5899999999999999999999999999999999987754 8899999864422221
Q ss_pred EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEE-eCCEEEEEECccCCC
Q 020021 116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVA-FGGYIRMFDARKYEK 194 (332)
Q Consensus 116 ~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~ 194 (332)
-.|.+.|.++.|+|-...|+|++-. ..-+|.................++.+..+|.+++.+ .+|+|.+=+-...
T Consensus 90 --YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-- 164 (1081)
T KOG1538|consen 90 --YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-- 164 (1081)
T ss_pred --eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC--
Confidence 2599999999999999999999873 567897654332222112223456777889988877 5799887643221
Q ss_pred CCeeEEEecCCCCCceeEEEcCCCC-----EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021 195 GPFDIFSVGGDISDANVVKFSNDGR-----LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (332)
Q Consensus 195 ~~~~~~~~~~~~~~v~~v~~s~dg~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg 269 (332)
+...+-..+|..+++-+++++|... .+++..=..++..+.+ +|+.+..-+ ...-...++.+.|+|.|++.|
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r---~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDR---ALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccc---cCCCCchhheeccCCcEEEEc
Confidence 2223334456777899999998643 3344443444444433 244332111 011122357888999999999
Q ss_pred cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEE
Q 020021 270 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 317 (332)
Q Consensus 270 s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~ 317 (332)
+.|+-+.++- +.|-.+.+.......|+.++.+|+++.++.|+.|.++
T Consensus 241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 9999999995 5677888888888899999999999999999988544
No 168
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=2e-16 Score=147.32 Aligned_cols=221 Identities=14% Similarity=0.169 Sum_probs=156.1
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDDE---SIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~---tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
.+.+..|...+.+.+|||||++|+.++.+. .|.+||+.+++. +..+.++ ....+|+|++..++++... ++
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~--~g 270 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSK--DG 270 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEec--CC
Confidence 456778888999999999999999887653 699999988754 3333332 3357999999998886531 44
Q ss_pred eeE--EEEccCCceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021 102 SLR--LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 102 ~v~--v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (332)
.+. ++|+.+++ ...+..|...+....|+|||+.++.++ .++..++|++......
T Consensus 271 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------------------- 327 (429)
T PRK01742 271 VLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------------------- 327 (429)
T ss_pred cEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------------------
Confidence 444 45666655 445666777788999999999776554 6788888875422100
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
.+. . . ... ....+||||+.++..+.++ +.+||+.+++...... .. ......
T Consensus 328 -----~~~-------------l--~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~ 378 (429)
T PRK01742 328 -----ASL-------------V--G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPS 378 (429)
T ss_pred -----eEE-------------e--c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCce
Confidence 000 0 0 000 2356899999998887765 5569998876542211 11 123568
Q ss_pred ECCCCCEEEEEcCCCcEEEEEC--CCCceEEEecCCCCCCceEEeCCC
Q 020021 259 FSPEGMFVISGSGDGSVYAWSV--RSGKEVASWMSFDTEPPVIKWTPG 304 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg~i~vWd~--~~~~~~~~~~~~~~~v~~l~~sp~ 304 (332)
|+|||++|+.++.++.+++|++ .+++.+..+..|++.+...+|||-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9999999999999999998886 357778888888888899999984
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.9e-17 Score=146.36 Aligned_cols=241 Identities=14% Similarity=0.189 Sum_probs=171.3
Q ss_pred cccceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCC
Q 020021 9 EDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP 88 (332)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 88 (332)
.+++.++--+-.++...++..+.|.. -+|++......|+++||..+.|+|||+....+.+.++.|...|+.+.+....
T Consensus 56 dk~~~~~~K~g~~~~Vp~~~k~~gd~--~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D 133 (673)
T KOG4378|consen 56 DKVMRIKEKDGKTPEVPRVRKLTGDN--AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD 133 (673)
T ss_pred ceeEEEecccCCCCccceeeccccch--HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc
Confidence 34444443333344455555555542 2344444444899999999999999999878888899999999999999888
Q ss_pred CEEEEecCCCCCceeEEEEccCCceEEEeecc-cccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEE-ecCce
Q 020021 89 TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH-HDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLR-VQGRP 165 (332)
Q Consensus 89 ~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h-~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~ 165 (332)
.++++.+.+ +.|.+..++++.....|..- ...|+-+.|++..+ +|.++|.+|+|.+||.....+..... .+..+
T Consensus 134 eyiAsvs~g---Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP 210 (673)
T KOG4378|consen 134 EYIASVSDG---GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP 210 (673)
T ss_pred ceeEEeccC---CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence 899888764 46889999888766666544 34566889999776 67889999999999987766554332 12222
Q ss_pred --eEEEcC--CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe-E
Q 020021 166 --AAAYDD--QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-L 240 (332)
Q Consensus 166 --~~~~~~--~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~-~ 240 (332)
..++++ ...+++++.|..|.+||++.........+. .+...++|+++|.+|++|+..|.|..||++.-+ +
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeeec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 345554 346777889999999999864332222221 357889999999999999999999999998643 3
Q ss_pred eEEeeecCCCCCcceEEEECCC
Q 020021 241 LSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~spd 262 (332)
+.... .|...|.+++|=|.
T Consensus 286 v~v~s---ah~~sVt~vafq~s 304 (673)
T KOG4378|consen 286 VAVRS---AHDASVTRVAFQPS 304 (673)
T ss_pred ceEee---ecccceeEEEeeec
Confidence 33333 45667888988554
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=8.3e-17 Score=146.96 Aligned_cols=234 Identities=18% Similarity=0.319 Sum_probs=170.0
Q ss_pred ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE
Q 020021 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157 (332)
Q Consensus 78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~ 157 (332)
.|..+||.|+|..++.++ ++.+.+||.+.|..+.++++|++-|.+++|+.||++|+||+.|+.|.+|..+- .+
T Consensus 14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EG 86 (1081)
T ss_pred chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cc
Confidence 577899999999998876 56899999999999999999999999999999999999999999999997543 33
Q ss_pred EEEec---CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021 158 LLRVQ---GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (332)
Q Consensus 158 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d 234 (332)
.++.. ...+..+.|-...++...=+..-+|......-.+ ......+.++++..||++++.|-.+|+|.+-+
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K------~kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK------HKSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh------hhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 44332 2334555564444444333334556543211000 00123578899999999999999999999986
Q ss_pred ccCCeEeEEeeecCCCCCcceEEEECCCC-----CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021 235 SFRGTLLSTYNVKPVSRNSTLEASFSPEG-----MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV 309 (332)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~spdg-----~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 309 (332)
.+|+....+....+.+.+++.++|+|.. ..++......++..+.+ +|+.+..-...+=.+-|+++-|+|.++.
T Consensus 161 -k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 161 -KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred -CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEE
Confidence 4466555566666677899999999964 46677777777777776 4666664444444567899999999888
Q ss_pred eccce--EEEecccccccc
Q 020021 310 TGSSE--LSFWIPDLSKLG 326 (332)
Q Consensus 310 t~~~d--~~~w~~~~~~~~ 326 (332)
.|+.| ++++.-+.-+||
T Consensus 239 iGGsdk~L~~fTR~GvrLG 257 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGVRLG 257 (1081)
T ss_pred EccCCCceEEEeecCeEEe
Confidence 88776 666665544443
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.1e-14 Score=131.31 Aligned_cols=253 Identities=9% Similarity=0.097 Sum_probs=159.2
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEE-eCCCcEEEEEcC-CCee--eEEeeecccceeEEEEccCCCEEEEecCC
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTA-SDDESIRLYDVT-AATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKN 97 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tg-s~D~tv~iwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 97 (332)
+.+++.+++. +.+....++++|++++|+.+ ..++.|.+|++. ++.. +..... ......++++++++.++.+..
T Consensus 23 g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~- 99 (330)
T PRK11028 23 GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSPTHISTDHQGRFLFSASY- 99 (330)
T ss_pred CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCceEEEECCCCCEEEEEEc-
Confidence 3445556665 34567788999999988655 458899999996 3432 222221 223457899999998887753
Q ss_pred CCCceeEEEEccC-Cc---eEEEeecccccEEEEEecCCCCeEE-EeeCCCcEEEEeCCCceEEE-----EEEe---cCc
Q 020021 98 GWDESLRLLSLHD-NK---YLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQG-----LLRV---QGR 164 (332)
Q Consensus 98 g~d~~v~v~d~~~-~~---~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~-----~~~~---~~~ 164 (332)
.++.+.+|+++. +. .+..+.+ .....+++++|++++++ +...++.|.+||+++..... .... ...
T Consensus 100 -~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p 177 (330)
T PRK11028 100 -NANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP 177 (330)
T ss_pred -CCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence 278999999964 22 2333332 23456788999998875 55567999999997632221 1111 111
Q ss_pred eeEEEcCCCeEEEEEe--CCEEEEEECccCCCCCeeEE-EecCC------CCCceeEEEcCCCCEEEEEc-CCCeEEEEE
Q 020021 165 PAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIF-SVGGD------ISDANVVKFSNDGRLMLLTT-MEGHIHVLD 234 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~-~~~~~------~~~v~~v~~s~dg~~l~~~~-~dg~i~i~d 234 (332)
....+++++.++.+.. ++.|.+|++.... +.+... .+... ......+.++|||+++.++. .++.|.+|+
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 2457778877665554 6899999986321 122111 11110 01123588999999888874 478999999
Q ss_pred ccCCe-EeEEeeecCCCCCcceEEEECCCCCEEEEEcC-CCcEEEEECC
Q 020021 235 SFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVYAWSVR 281 (332)
Q Consensus 235 ~~~~~-~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-Dg~i~vWd~~ 281 (332)
+.... .+......+. ......++|+|||++|+++.. +++|.+|++.
T Consensus 257 i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 257 VSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 85432 1111111011 123446899999999998865 8999999874
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.4e-17 Score=160.18 Aligned_cols=273 Identities=16% Similarity=0.250 Sum_probs=181.9
Q ss_pred EEEECCCCC-EEEEE----------eCCCcEEEEEcCC--Ce----eeEEeeecccceeEEEEccCCCE---EEEecCCC
Q 020021 39 SMDFHKSSS-YLVTA----------SDDESIRLYDVTA--AT----CLKTINSKKYGVDLVCFTSHPTT---VIYSSKNG 98 (332)
Q Consensus 39 ~i~~s~dg~-~l~tg----------s~D~tv~iwd~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g 98 (332)
.++|+|++. ++++| +.+.++-||.+.. .+ ....+. .......++|.+.+.. ++.++ .
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG--~ 87 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG--L 87 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc--c
Confidence 457888885 44433 4456777776642 22 111111 1234567888876665 45443 4
Q ss_pred CCceeEEEEccC---Cc---eEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEE---e-cCceeE
Q 020021 99 WDESLRLLSLHD---NK---YLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLR---V-QGRPAA 167 (332)
Q Consensus 99 ~d~~v~v~d~~~---~~---~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~-~~~~~~ 167 (332)
.|+.|-+||... +. .+..+..|++.|.+++|++. ++.||||+.||.|.|||++....-...- . ....+.
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 589999999654 22 35667889999999999995 5599999999999999987532211110 0 011122
Q ss_pred EEcCC-CeEEEEE-eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCC---eEEEEEccCCe-E
Q 020021 168 AYDDQ-GLVFAVA-FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEG---HIHVLDSFRGT-L 240 (332)
Q Consensus 168 ~~~~~-~~~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg---~i~i~d~~~~~-~ 240 (332)
.+..+ ..+++.+ .+|++.+||+|..+ +.-.+...+....++.++++|++ +.+++++.|. .|.+||++... .
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 22221 2445544 46899999999752 22222322222457889999998 4455555543 69999986532 3
Q ss_pred eEEeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEeccce--EE
Q 020021 241 LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGSSE--LS 316 (332)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~~d--~~ 316 (332)
++++. +|...+.++.|++.+ ++|+|++.|+.|.+|+..+++.+..+..-...+..+.|.|..= .++.++-| +.
T Consensus 246 ~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 246 LKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 44443 577888999999866 9999999999999999999999999988778899999999653 55556555 55
Q ss_pred Eec
Q 020021 317 FWI 319 (332)
Q Consensus 317 ~w~ 319 (332)
+..
T Consensus 323 I~s 325 (1049)
T KOG0307|consen 323 IYS 325 (1049)
T ss_pred eee
Confidence 543
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.1e-17 Score=156.33 Aligned_cols=242 Identities=18% Similarity=0.229 Sum_probs=184.5
Q ss_pred CcEEEEEECCCCCE----EEEEeCCCcEEEEEcCC---C---eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 35 GRISSMDFHKSSSY----LVTASDDESIRLYDVTA---A---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 35 ~~I~~i~~s~dg~~----l~tgs~D~tv~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
...+.+.|.+.|.. ||.|..||+|.+||... + +.+.+...|...|..+.|++....++.+. +-|+.|.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG--a~~geI~ 142 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG--ADDGEIL 142 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc--CCCCcEE
Confidence 34678889877755 99999999999999864 2 23456677888999999999887544332 2388999
Q ss_pred EEEccCCceEEEee--cccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecC----ceeEEEcCCC--eE
Q 020021 105 LLSLHDNKYLRYFK--GHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQG--LV 175 (332)
Q Consensus 105 v~d~~~~~~~~~~~--~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~--~~ 175 (332)
+||++.-+...++. .-.+.|.+++|+.. ...|+|++.+|.+.|||++.++.+..+.... .....++++. .+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence 99998865555542 24678999999974 4588999999999999999887655443322 1245666644 45
Q ss_pred EEEEeC---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021 176 FAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251 (332)
Q Consensus 176 ~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 251 (332)
+.++.| -.|.+||+|.-.. +..++ .+|...+.++.+++.+ +++++++.|++|.+|+..+++.+..+- ...
T Consensus 223 ~~As~dd~~PviqlWDlR~ass-P~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~ 296 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASS-PLKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---AQG 296 (1049)
T ss_pred eeecCCCCCceeEeecccccCC-chhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---CCC
Confidence 544443 3799999996542 33333 5677889999999877 899999999999999999999988775 356
Q ss_pred CcceEEEECCCCC-EEEEEcCCCcEEEEECCCCc
Q 020021 252 NSTLEASFSPEGM-FVISGSGDGSVYAWSVRSGK 284 (332)
Q Consensus 252 ~~~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~~ 284 (332)
+++..+.|.|-.- .++.++-||.|.|+.+..+.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7889999999776 77888999999999997654
No 174
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.8e-17 Score=139.78 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=144.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (332)
Q Consensus 38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~ 117 (332)
.+++|+++|..|++|+.||++|||+..+.+.+.....|...|..+.|+|+++.+++.+. | ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchhhhc
Confidence 68899999999999999999999998777777777788889999999999999988754 5 7999999998655544
Q ss_pred e--cccccEEEEEecCCC-----CeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021 118 K--GHHDRVVSLSLCSSK-----DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDAR 190 (332)
Q Consensus 118 ~--~h~~~V~~v~~~~~~-----~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~ 190 (332)
. ........+.|+.|+ ..++....-+.|+.||+ .+|+-.
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~----------------------------------~~w~~~ 269 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI----------------------------------SLWSGS 269 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------------------eeeccc
Confidence 3 222234455666554 12222233334444432 122110
Q ss_pred cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021 191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 270 (332)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs 270 (332)
+..+. .+.-.....+++++.|+||++++.|+.||.|-|++..+.+.++.. +..|...|+.+.|+||.+++++.|
T Consensus 270 ~~l~~----~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 270 NFLRL----RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVS 343 (398)
T ss_pred cccch----hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccc
Confidence 00000 000011236789999999999999999999999999887765533 335677899999999999999999
Q ss_pred CCCcEEEEECCC
Q 020021 271 GDGSVYAWSVRS 282 (332)
Q Consensus 271 ~Dg~i~vWd~~~ 282 (332)
.|..+.|..+.-
T Consensus 344 s~~~~~v~~l~v 355 (398)
T KOG0771|consen 344 SDNEAAVTKLAV 355 (398)
T ss_pred cCCceeEEEEee
Confidence 999999887743
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.8e-14 Score=134.34 Aligned_cols=285 Identities=13% Similarity=0.185 Sum_probs=193.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC----CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~ 106 (332)
+.|+..+++.++||.++++|+|..||.|.+|.-.. ....+.+..|...|.+++|+++|..+++| |+++.+-+|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG---G~E~VLv~W 278 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG---GREGVLVLW 278 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeec---ccceEEEEE
Confidence 45788899999999999999999999999996432 22345678899999999999999999976 678999999
Q ss_pred EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-------------ceeEEEcC-C
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDD-Q 172 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-------------~~~~~~~~-~ 172 (332)
.+++++ .+-|..-.++|..+.++||++..+....|..|.+-...+......+.... ......+| .
T Consensus 279 q~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 279 QLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred eecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 999988 44455567899999999999999999999999988764433322222110 11234445 3
Q ss_pred CeEEEEEeCCEEEEEECccCCCC-CeeEEEecCC------CCCceeEEEcCCCCEEEEEcC--------CC--eEEEEEc
Q 020021 173 GLVFAVAFGGYIRMFDARKYEKG-PFDIFSVGGD------ISDANVVKFSNDGRLMLLTTM--------EG--HIHVLDS 235 (332)
Q Consensus 173 ~~~~~~~~~~~i~vwd~~~~~~~-~~~~~~~~~~------~~~v~~v~~s~dg~~l~~~~~--------dg--~i~i~d~ 235 (332)
+..+..+..+.|.+||+-+...- .+.+.....+ .-.+++++.+-.|.++++.-. || .++.|-.
T Consensus 358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 34444555689999997543211 1111111111 123566777778888776542 22 4666764
Q ss_pred cCCe---EeEEeeecCCCCCcceEEE-ECCCCC-EEEEEcCCCcEEEEECCCCc------------eEEEecCCCCCCce
Q 020021 236 FRGT---LLSTYNVKPVSRNSTLEAS-FSPEGM-FVISGSGDGSVYAWSVRSGK------------EVASWMSFDTEPPV 298 (332)
Q Consensus 236 ~~~~---~~~~~~~~~~~~~~~~~v~-~spdg~-~l~sgs~Dg~i~vWd~~~~~------------~~~~~~~~~~~v~~ 298 (332)
.... .+.+....| |.+.....+ ++|... .++++|.||.++||-+...+ .+.. .|..+++.
T Consensus 438 n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s--y~k~~i~a 514 (792)
T KOG1963|consen 438 NPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS--YHKTPITA 514 (792)
T ss_pred cCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec--cccCcccc
Confidence 3322 222222223 344444444 444444 89999999999999883321 1222 37888999
Q ss_pred EEeCCCeeEEEeccce-EEEecccc
Q 020021 299 IKWTPGSLMFVTGSSE-LSFWIPDL 322 (332)
Q Consensus 299 l~~sp~~~~l~t~~~d-~~~w~~~~ 322 (332)
++|+.||..|+.+-++ +.+|+++.
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecCCC
Confidence 9999999888777666 99999987
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=6.7e-15 Score=140.70 Aligned_cols=284 Identities=15% Similarity=0.223 Sum_probs=185.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc---cceeEEEEccCCC--EEEEecCCCCCceeEEEEc
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~--~~~~~s~~g~d~~v~v~d~ 108 (332)
..+-..+.|+|=.+.++++..--+|++||-+.++++.-|..+. ..|+.+++-.... .+++++. |+.||+|+-
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~---dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS---DGVIRIWKD 1140 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc---CceEEEecc
Confidence 3456678899888899988888899999999999887776543 3467766654333 3455544 889999963
Q ss_pred -cCC----ceEEE---eeccc----ccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-EEE---cCC
Q 020021 109 -HDN----KYLRY---FKGHH----DRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAY---DDQ 172 (332)
Q Consensus 109 -~~~----~~~~~---~~~h~----~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~---~~~ 172 (332)
... +.+.. +.++. +.=.-++|.....+|+++|.-+.|+|||...+.+...+....... ... ...
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 332 11211 22221 111335677655566666668999999998877665553322211 111 123
Q ss_pred CeEEEEE-eCCEEEEEECccCCCC-CeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCC
Q 020021 173 GLVFAVA-FGGYIRMFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 173 ~~~~~~~-~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
+.++++| .||.||+||.|..... ....+.......+|.-+.+-+.|- .+++++.+|.|++||++.......+.....
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 4555555 5899999999865432 222222222223477788877663 599999999999999987533222221110
Q ss_pred C--CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-------CCCCceEEeCCCeeEEEeccce--EEEe
Q 020021 250 S--RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-------DTEPPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 250 ~--~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
. ....+++..+++...+|+|+. +.|.||++. |+.+..+..+ .+.+.|++|||-..+++.|+.| +.+.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 0 123667888999999999998 999999984 5555544322 2456899999999999999877 7777
Q ss_pred cccc
Q 020021 319 IPDL 322 (332)
Q Consensus 319 ~~~~ 322 (332)
....
T Consensus 1379 s~~k 1382 (1387)
T KOG1517|consen 1379 SCEK 1382 (1387)
T ss_pred ecCC
Confidence 6544
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.7e-14 Score=122.53 Aligned_cols=235 Identities=16% Similarity=0.259 Sum_probs=164.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
..+..+.|..+...|..|+.||. ++|+.+..... +.....++..+..-.....++..+. ..-..+++.+.+.+..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~--~~~~~~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC--FSKDTEGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHh--hcccCCCeEEEEeecccceeEEEec-CCCceEEEEEcccCceE
Confidence 45777789999988988999986 89988754431 1111223344443333334444332 22356888888887766
Q ss_pred EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-Cce--eEEEc--CCCeEEEEE---eCCEEEE
Q 020021 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRP--AAAYD--DQGLVFAVA---FGGYIRM 186 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~--~~~~~--~~~~~~~~~---~~~~i~v 186 (332)
..+. ...+|.+|.++. ++|+.+=.+ .|.|+|++..+.+.++... .++ ..+++ +.+.+++-- ..|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 6554 456888888875 556655444 4999999999888777543 111 22333 333454432 2489999
Q ss_pred EECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021 187 FDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (332)
Q Consensus 187 wd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~ 265 (332)
||+.+.+. . ....-|...+-+++||++|.++|++++.|+ ||+|....|+.+.+|+.... ...+.+++|+||+++
T Consensus 158 ~d~~nl~~--v--~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 158 FDTINLQP--V--NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQF 232 (391)
T ss_pred EEccccee--e--eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCe
Confidence 99876542 2 222357788999999999999999999996 89999999999999986543 456678999999999
Q ss_pred EEEEcCCCcEEEEECCC
Q 020021 266 VISGSGDGSVYAWSVRS 282 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~ 282 (332)
|++.|.-++|.||.+.+
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998865
No 178
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=9.5e-16 Score=134.05 Aligned_cols=204 Identities=14% Similarity=0.204 Sum_probs=146.2
Q ss_pred ccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021 31 RDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~ 109 (332)
.+|+..|.+++|+..- +.|||||.|.||++||+++++|..++..|...|..+.|++....++... ++|++|++.|..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG--s~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG--SYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec--cccceEEeeecc
Confidence 3799999999998654 6899999999999999999999999999999999999999877665543 469999999987
Q ss_pred CCceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCc-eEEEEEEecCc--eeEEEc--CCCeEEEEEeCCE
Q 020021 110 DNKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGR--PAAAYD--DQGLVFAVAFGGY 183 (332)
Q Consensus 110 ~~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~ 183 (332)
........=.-.+.|-.+.|.+. ...++.+..||+++..|+|.. ++...++.+.. ....+. .++.+.+++.++.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 42221111124567888899885 457888899999999999876 67767665532 233333 3566777778999
Q ss_pred EEEEECccCCCCCee--EEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeE
Q 020021 184 IRMFDARKYEKGPFD--IFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL 240 (332)
Q Consensus 184 i~vwd~~~~~~~~~~--~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~ 240 (332)
+++|++...+..... -+.+ ....+.++.|+- -.++.|+..+.+++||..++..
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~----~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKL----GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred EEEEeecCCCCcccccccccc----cceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999998654321110 0111 123344555554 3567778888899999877543
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.8e-15 Score=140.06 Aligned_cols=274 Identities=17% Similarity=0.275 Sum_probs=181.8
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE---EEEecCCCCCceeEEE
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT---VIYSSKNGWDESLRLL 106 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~s~~g~d~~v~v~ 106 (332)
|.|-+..-..-.||+|+++++ +..+.+|.||.+.+++|+..+..|..++..+.+.+.... ++.++ .|+.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~-~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s---l~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLF-LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS---LDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEE-EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe---cCccEEEe
Confidence 566666666677999998886 555678999999999999999999999998888876663 33343 38899999
Q ss_pred EccCCceEEEeecccccEEEEEecC---CCCeEEEeeC-CCcEEE-EeCCCceEE-----EEE--------Eec-CceeE
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCS---SKDCFISGSL-DRTVLL-WDQRAEKCQ-----GLL--------RVQ-GRPAA 167 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~---~~~~l~s~s~-Dg~i~i-Wd~~~~~~~-----~~~--------~~~-~~~~~ 167 (332)
|...+..++++..+.. +..+.+.| +...++..+. |..+-. -.....+.. .++ ... .....
T Consensus 88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 9999998888764432 22222211 1112222221 111110 000000000 000 000 01234
Q ss_pred EEcCCCeEEEEEeCCEEEEEECccCCC--CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC--CeE--e
Q 020021 168 AYDDQGLVFAVAFGGYIRMFDARKYEK--GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--GTL--L 241 (332)
Q Consensus 168 ~~~~~~~~~~~~~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~--~~~--~ 241 (332)
++.+.+.+.....+..+.+|+...... ..... .-.|...+++.++||.+++++++..||+|.+|.-.. +.. .
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~--~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI--TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccceeeccchh--hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence 555667777777888899998765221 11110 112334478899999999999999999999998543 111 1
Q ss_pred EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 242 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
..++ =|...+..++||+||.+|+|||.+|.+-+|.+.+++ ..-+....++|..+.+|||+...+....|
T Consensus 245 t~lH---WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 245 TLLH---WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred eEEE---ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 1222 245688899999999999999999999999999987 44456778899999999999877666556
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=128.24 Aligned_cols=219 Identities=14% Similarity=0.240 Sum_probs=158.3
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-----cceeEEEEccCCCEEEEecCCCCCceeEEEEccC-Cc--eEE
Q 020021 44 KSSSYLVTASDDESIRLYDVTAATCLKTINSKK-----YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NK--YLR 115 (332)
Q Consensus 44 ~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-~~--~~~ 115 (332)
|+.+++|+.+.|.-|++||.-+|+....+.+.+ .+..+++|+|+|.+++++ ..+.|+++|+.. |. ...
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcch
Confidence 788999999999999999999999988776532 245789999999999965 478999999854 32 122
Q ss_pred Ee-----ecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEec--CceeEEEcCCCe-EEEEEe-CCEEE
Q 020021 116 YF-----KGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--GRPAAAYDDQGL-VFAVAF-GGYIR 185 (332)
Q Consensus 116 ~~-----~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-~~~i~ 185 (332)
.. .+..+-|.+++|+| +.+.++-++.-.++-|+.-..+.+..++..+ +..-..+.+++. +++++. +.+|-
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL 276 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence 22 23466788999999 5568999999888888776666665555432 344556677664 454443 78999
Q ss_pred EEECccCCCCCeeEEEecCCCC---CceeEEEcCCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcceEEEECC
Q 020021 186 MFDARKYEKGPFDIFSVGGDIS---DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSP 261 (332)
Q Consensus 186 vwd~~~~~~~~~~~~~~~~~~~---~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~sp 261 (332)
.||+|..... ++.+..+.. .-.-....|+|+.|++|+.+|.|++||+.. |.....+ ..+..++..++++|
T Consensus 277 ~WDiR~~~~p---v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 277 CWDIRYSRDP---VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---GNYSDTVNGVSLNP 350 (406)
T ss_pred EEeehhccch---hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---ccccccccceecCc
Confidence 9999976432 233333332 222345579999999999999999999987 4433222 24567788899999
Q ss_pred CCCEEEEEcCC
Q 020021 262 EGMFVISGSGD 272 (332)
Q Consensus 262 dg~~l~sgs~D 272 (332)
--..+|++|-.
T Consensus 351 ~mpilatssGq 361 (406)
T KOG2919|consen 351 IMPILATSSGQ 361 (406)
T ss_pred ccceeeeccCc
Confidence 98888888753
No 181
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.5e-14 Score=132.12 Aligned_cols=224 Identities=14% Similarity=0.147 Sum_probs=150.1
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~---D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
+.+..+...+.+.+|||||+.|+..+. +..+.+||+.+++..... .....+....|+|+++.+++.....-+..|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445556778999999999999886543 457999999887643322 2222244578999999988764322234688
Q ss_pred EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC-CcEEEE--eCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-RTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D-g~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (332)
+||+++++... +..+...+....|+|||+.|+..+.+ +..++| |+.++... .
T Consensus 271 ~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~----------------------- 325 (429)
T PRK03629 271 VMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-R----------------------- 325 (429)
T ss_pred EEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-E-----------------------
Confidence 99998877544 34444567889999999988777654 455555 33322110 0
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---CeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
+ .. .........+||||+.++..+.+ ..|.+||+.+++.. .+.. . .......
T Consensus 326 ----l--------------t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~--~--~~~~~p~ 380 (429)
T PRK03629 326 ----I--------------TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD--T--FLDETPS 380 (429)
T ss_pred ----e--------------ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC--C--CCCCCce
Confidence 0 00 00112346899999998776543 36888999877643 2221 1 1123468
Q ss_pred ECCCCCEEEEEcCCCc---EEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021 259 FSPEGMFVISGSGDGS---VYAWSVRSGKEVASWMSFDTEPPVIKWTP 303 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg~---i~vWd~~~~~~~~~~~~~~~~v~~l~~sp 303 (332)
|+|||++|+.++.|+. ++++++ +++....+..|++.+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 9999999999998875 777787 5666677777888889999998
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.8e-14 Score=115.40 Aligned_cols=204 Identities=16% Similarity=0.273 Sum_probs=135.6
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC----CeeeEE----eeecc-----cceeEEEEccCCCEEEEec
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTA----ATCLKT----INSKK-----YGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~----~~~~~~----~~~~~-----~~v~~~~~~~~~~~~~~~s 95 (332)
.+++|.++|..+.|. ..+|++|+. |.|+=|.-.. ..+... ...+. ..|..+.+.|..+.++.+.
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred eccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence 458999999999998 457777765 9999996532 111111 11111 2356677777777777764
Q ss_pred CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021 96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 175 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (332)
| |+.+.-||+++|+..+.++||++.|.++.--.....+.||+.||++|+||.+++++..++....++.....+-+.
T Consensus 134 --G-D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~- 209 (325)
T KOG0649|consen 134 --G-DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK- 209 (325)
T ss_pred --C-CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc-
Confidence 3 899999999999999999999999999987555668999999999999999999998877543322111100000
Q ss_pred EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021 176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL 255 (332)
Q Consensus 176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 255 (332)
-+.+++.+ ...++ ++....+.+|.+++.+....+... ..+-
T Consensus 210 --------------------------------wigala~~--edWlv-CGgGp~lslwhLrsse~t~vfpip----a~v~ 250 (325)
T KOG0649|consen 210 --------------------------------WIGALAVN--EDWLV-CGGGPKLSLWHLRSSESTCVFPIP----ARVH 250 (325)
T ss_pred --------------------------------eeEEEecc--CceEE-ecCCCceeEEeccCCCceEEEecc----ccee
Confidence 12223332 22333 334456777887777666555421 2333
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 256 EASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 256 ~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.+.| +...+++++....+.-|.+
T Consensus 251 ~v~F--~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 251 LVDF--VDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred Eeee--ecceEEEeccccceeeeee
Confidence 4555 4556777777778888876
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.8e-16 Score=130.31 Aligned_cols=183 Identities=18% Similarity=0.236 Sum_probs=134.4
Q ss_pred CceeEEEEccCCceEEEeecccccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCceEEEEEEec---CceeEEEcC--C
Q 020021 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDD--Q 172 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---~~~~~~~~~--~ 172 (332)
.++|++||..+++.+..+++|...++.+.|.. .+..+.||+.||+||+||++.......+... +.+...++. +
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 56899999999999999999999999999986 5678999999999999999887655544332 233344443 5
Q ss_pred CeEEEEEe-----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021 173 GLVFAVAF-----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (332)
Q Consensus 173 ~~~~~~~~-----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (332)
..+++++. +..+.+||+|..+.. +..+. ..|..+|+.+.|.|.. .++++|+.||-|.+||+....-...+..
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~-eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQL-LRQLN-ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccch-hhhhh-hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 66777664 468999999976531 22222 2355689999999965 7899999999999999865432222211
Q ss_pred cCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCc
Q 020021 247 KPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK 284 (332)
Q Consensus 247 ~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~ 284 (332)
...+...|..+.|..++ +.|.+-+.+++..+|++..+.
T Consensus 207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 11234456678888887 347778889999999887765
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.3e-14 Score=135.14 Aligned_cols=207 Identities=16% Similarity=0.185 Sum_probs=136.6
Q ss_pred CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce--EEEeecccccEEEEEecCC
Q 020021 55 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSS 132 (332)
Q Consensus 55 D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~--~~~~~~h~~~V~~v~~~~~ 132 (332)
+.+|.+||....+ .+.+..+...+...+|+|+++.+++.+...-+..|.+||+.+++. +..+.+|. ..++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC
Confidence 5799999987544 556666666788899999999998876533346799999988754 33344443 46799999
Q ss_pred CCeEEEee-CCCcEEEEe--CCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCc
Q 020021 133 KDCFISGS-LDRTVLLWD--QRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDA 209 (332)
Q Consensus 133 ~~~l~s~s-~Dg~i~iWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v 209 (332)
|+.|+.++ .||.+.+|. +.++..... ..+...+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~l--------------------------------------------t~~~~~~ 294 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQL--------------------------------------------TSGAGNN 294 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEee--------------------------------------------ccCCCCc
Confidence 99888764 688776664 333221100 0011234
Q ss_pred eeEEEcCCCCEEEEEc-CCCeEEEEEccCC-eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021 210 NVVKFSNDGRLMLLTT-MEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA 287 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~ 287 (332)
....|||||+.++..+ .+|..++|++... .....+. +.. ....|||||++|+.++.++ +.+||+.+++...
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG----GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec----CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence 5678999999776554 5677788876432 1122221 111 2467999999999888765 5669998876543
Q ss_pred EecCCCCCCceEEeCCCeeEEEeccce--EEEe
Q 020021 288 SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW 318 (332)
Q Consensus 288 ~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w 318 (332)
....+ ....++|+|||++++.++.+ ..+|
T Consensus 368 lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 368 LSSTF--LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred ecCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 22222 23568899999999987765 4444
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.6e-15 Score=136.21 Aligned_cols=275 Identities=17% Similarity=0.219 Sum_probs=181.2
Q ss_pred EEECCCC--CEEEEEeCCCcEEEE--EcCCC--------------------eeeEEeeecccceeEEEEccCCCEEEEec
Q 020021 40 MDFHKSS--SYLVTASDDESIRLY--DVTAA--------------------TCLKTINSKKYGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 40 i~~s~dg--~~l~tgs~D~tv~iw--d~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 95 (332)
|++.|.+ +..++...|.-.++| ++... ....++..|...+....|++....++.++
T Consensus 234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~s 313 (577)
T KOG0642|consen 234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITAS 313 (577)
T ss_pred ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEec
Confidence 5555544 566777777888888 43211 11224556666777788888888888886
Q ss_pred CCCCCceeEEEEccC--------CceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce----------EEE
Q 020021 96 KNGWDESLRLLSLHD--------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK----------CQG 157 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~--------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~----------~~~ 157 (332)
. |+.+++|+++. -+++.+|++|.++|.++++.+.+.++.||+-||+|+.|++..+. ...
T Consensus 314 e---d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 314 E---DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred c---ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 5 88999999922 23688999999999999999999999999999999999653211 112
Q ss_pred EEEecCce--eEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEE
Q 020021 158 LLRVQGRP--AAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVL 233 (332)
Q Consensus 158 ~~~~~~~~--~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~ 233 (332)
.+..+... ...++. ..+++++++||++|.|+........+......+ --.++.+-... .+.++...-+.-.+.
T Consensus 391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g---~Plsvd~~ss~~a~~~~s~~~~~~~~~ 467 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG---YPLSVDRTSSRPAHSLASFRFGYTSID 467 (577)
T ss_pred ceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC---CcceEeeccchhHhhhhhcccccccch
Confidence 22222222 234443 456788889999999987654432122111111 11223332111 122222222333333
Q ss_pred EccCCeEeEEeeec--CC--CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021 234 DSFRGTLLSTYNVK--PV--SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV 309 (332)
Q Consensus 234 d~~~~~~~~~~~~~--~~--~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 309 (332)
|......+..+... +. ....+..+...|.+.+.+++.+|+.|+++|..+++.++....|...++++++.|+|-+|+
T Consensus 468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred hhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence 43333333332211 11 113445678889999999999999999999999999999999999999999999999999
Q ss_pred eccce--EEEecc
Q 020021 310 TGSSE--LSFWIP 320 (332)
Q Consensus 310 t~~~d--~~~w~~ 320 (332)
+++.| +.+|..
T Consensus 548 s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 548 SGSHDGSVRLWKL 560 (577)
T ss_pred eecCCceeehhhc
Confidence 99998 555544
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=1.8e-15 Score=130.95 Aligned_cols=214 Identities=20% Similarity=0.285 Sum_probs=152.9
Q ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021 34 NGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (332)
Q Consensus 34 ~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~ 112 (332)
..+|.++.|.+.+. .||||+.|..||||-++.++. . +-+..| +
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~------------------~----------~~~~~V--------~ 56 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP------------------G----------GGDMKV--------E 56 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCC------------------C----------CCceeE--------E
Confidence 35799999988765 999999999999998764321 0 001111 3
Q ss_pred eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY 192 (332)
Q Consensus 113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~ 192 (332)
++..|.+|+..|+.+.|+|+|+.|+||+.+|.+.+|-....... . .+. -...+.
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~--------~d~---e~~~~k---------- 110 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----D--------ADT---EADLNK---------- 110 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----c--------ccc---hhhhCc----------
Confidence 35567889999999999999999999999999999965321100 0 000 000000
Q ss_pred CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC
Q 020021 193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD 272 (332)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D 272 (332)
........+.+|..++..++++||+.++++++.|..+++||+..|.++..+. .|...+..++|.|-++|+++-|.|
T Consensus 111 -e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 111 -EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred -cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccC
Confidence 0011122344577788999999999999999999999999999999887665 456677789999999999999999
Q ss_pred CcEEEEECCCCceEEEec-------------------CCCC----CCceEEeCCCeeEEEeccc
Q 020021 273 GSVYAWSVRSGKEVASWM-------------------SFDT----EPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 273 g~i~vWd~~~~~~~~~~~-------------------~~~~----~v~~l~~sp~~~~l~t~~~ 313 (332)
...+++.+...+.+.... -|+. ....++|+|||.+|++.+.
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 988888876544322111 1111 1244899999999998654
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.2e-15 Score=127.93 Aligned_cols=257 Identities=16% Similarity=0.251 Sum_probs=157.2
Q ss_pred ccceeEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc-eeEEEEccC--CCEEEEecC-C
Q 020021 24 MEVGMSFRDYNGRISSMDFHK--SSSYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSH--PTTVIYSSK-N 97 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~--dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~--~~~~~~~s~-~ 97 (332)
...+..|++|.+.++.+.|.. ....+.+++.||+||+||+.+......+...+.+ -...+|..+ ...+.++.- .
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 345667899999999999976 4578899999999999999876554443332222 223444443 333333321 1
Q ss_pred CCCceeEEEEccCCce-EEE-eecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceE----EEEEEecC-ceeEEE
Q 020021 98 GWDESLRLLSLHDNKY-LRY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKC----QGLLRVQG-RPAAAY 169 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~-~~~-~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~----~~~~~~~~-~~~~~~ 169 (332)
+.+-.+.+||+...+. +.. ...|.+.|+++.|+| +.+.|+|||-||.|.++|++.... ..++.... .....+
T Consensus 140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw 219 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGW 219 (376)
T ss_pred cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeee
Confidence 2356799999977554 443 457999999999999 678999999999999999865432 11222111 223444
Q ss_pred cCCC--eEEEEEeCCEEEEEECccCCCCC-eeE--EEec---CCCC-CceeEEEcC-CCCEEEEE-cCCCeEEEEEc---
Q 020021 170 DDQG--LVFAVAFGGYIRMFDARKYEKGP-FDI--FSVG---GDIS-DANVVKFSN-DGRLMLLT-TMEGHIHVLDS--- 235 (332)
Q Consensus 170 ~~~~--~~~~~~~~~~i~vwd~~~~~~~~-~~~--~~~~---~~~~-~v~~v~~s~-dg~~l~~~-~~dg~i~i~d~--- 235 (332)
..++ ++++.+...+..+|++....... +.. .... ...+ .-..=+.+| ++...+.+ +.-++..++-+
T Consensus 220 ~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~ 299 (376)
T KOG1188|consen 220 LSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDT 299 (376)
T ss_pred ecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeec
Confidence 4555 68888888899999876543100 000 0000 0000 000012333 33444444 33455444433
Q ss_pred cCCeEeEEe-eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 236 FRGTLLSTY-NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 236 ~~~~~~~~~-~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.++..+... ....++...|.++.|...+.++.||++||.+.+|..
T Consensus 300 ~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 300 SSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 233322211 122335556777889899999999999999999986
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=1.5e-14 Score=120.52 Aligned_cols=257 Identities=14% Similarity=0.190 Sum_probs=172.9
Q ss_pred ccceeEeccCCCcEEEEEEC--CC-CCEEEEEeC----CCcEEEEEc--CCCeeeEEe-eecccceeEEEEccCCC----
Q 020021 24 MEVGMSFRDYNGRISSMDFH--KS-SSYLVTASD----DESIRLYDV--TAATCLKTI-NSKKYGVDLVCFTSHPT---- 89 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s--~d-g~~l~tgs~----D~tv~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~---- 89 (332)
.+.+..+.++- .++++.|| |+ +.+||-|+. ...|.|-.+ ++++.+..- ..|.++++.+-|.|+..
T Consensus 35 ~~eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 35 RKEIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred cceEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence 33333444333 57788888 33 356888873 244555433 355554433 25778899999999874
Q ss_pred EEEEecCCCCCceeEEEEccC--Cce--EEE-----eecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEE
Q 020021 90 TVIYSSKNGWDESLRLLSLHD--NKY--LRY-----FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLL 159 (332)
Q Consensus 90 ~~~~~s~~g~d~~v~v~d~~~--~~~--~~~-----~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 159 (332)
.+++.+ +..+|+|.+.. ++. ... -..+-+++++.+|+. +.+++.+.|-|-|+.|||++++... ..
T Consensus 114 dlLATs----~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~v 188 (364)
T KOG0290|consen 114 DLLATS----SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TV 188 (364)
T ss_pred chhhcc----cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-ce
Confidence 234333 35799999863 221 111 234667899999997 7889999999999999999775210 00
Q ss_pred EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCC
Q 020021 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG 238 (332)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~ 238 (332)
+ + .+-.|..+|..++|+.++ .++++.+.||.+++||++..
T Consensus 189 -------------------------k-------------T-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 189 -------------------------K-------------T-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred -------------------------e-------------e-EEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence 0 0 011244567888998866 57889999999999999875
Q ss_pred eEeEEeeecCCCCCcceEEEECCC-CCEEEEEcCCC-cEEEEECCC-CceEEEecCCCCCCceEEeCCC-eeEEEeccce
Q 020021 239 TLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDG-SVYAWSVRS-GKEVASWMSFDTEPPVIKWTPG-SLMFVTGSSE 314 (332)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg-~i~vWd~~~-~~~~~~~~~~~~~v~~l~~sp~-~~~l~t~~~d 314 (332)
+--..+.-.+....+..+++|+++ -+|+|+-..|. .|.|-|++. +..+..+..|.+.|+.++|.|. ...++|++.|
T Consensus 230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 433222212333456677888874 57888887776 688999975 4567889999999999999996 4789999999
Q ss_pred EEEeccccccc
Q 020021 315 LSFWIPDLSKL 325 (332)
Q Consensus 315 ~~~w~~~~~~~ 325 (332)
.+...|+++..
T Consensus 310 ~qaliWDl~q~ 320 (364)
T KOG0290|consen 310 CQALIWDLQQM 320 (364)
T ss_pred ceEEEEecccc
Confidence 55555555443
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=7.6e-15 Score=122.16 Aligned_cols=248 Identities=13% Similarity=0.232 Sum_probs=171.5
Q ss_pred cceeEeccCCCcEEEEEECCCCC-EEEEEeCC-------CcEEEEEcCC---------CeeeEEee-ecccceeEEEEcc
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSS-YLVTASDD-------ESIRLYDVTA---------ATCLKTIN-SKKYGVDLVCFTS 86 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D-------~tv~iwd~~~---------~~~~~~~~-~~~~~v~~~~~~~ 86 (332)
-.-++|..|.++|..|+-+|-.. +|+|+-.| ..+-||.+.. .+++..+. .+-..+.++.|.|
T Consensus 54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P 133 (370)
T KOG1007|consen 54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP 133 (370)
T ss_pred hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence 34467888999999999998664 55665543 4578997642 33444444 2334688999999
Q ss_pred CCCEEEEecCCCCCceeEEEEccCCce-EEEe-----ecccccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCceEEEE
Q 020021 87 HPTTVIYSSKNGWDESLRLLSLHDNKY-LRYF-----KGHHDRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGL 158 (332)
Q Consensus 87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~-----~~h~~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 158 (332)
++.++++.. |+.|.+|++..+.. ...+ .+|+...++-.|+| +++.|++. .|++++.||+++.++...
T Consensus 134 ns~klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s 208 (370)
T KOG1007|consen 134 NSDKLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS 208 (370)
T ss_pred CCCeeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc
Confidence 999998775 78999999988664 2222 23566677777887 45666554 568888888877654322
Q ss_pred EEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccC
Q 020021 159 LRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFR 237 (332)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~ 237 (332)
+.- .|...++.+.|+|..+ +|++++.||.|++||.+.
T Consensus 209 I~d------------------------------------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 209 IED------------------------------------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred hhh------------------------------------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 210 0112356678888775 567889999999999986
Q ss_pred Ce-EeEEeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEECCCC-----------------------------ceE
Q 020021 238 GT-LLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSVRSG-----------------------------KEV 286 (332)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~~-----------------------------~~~ 286 (332)
.+ ++.++. .|.-.+++|.|.|- .+.++|||.|..|.+|....- ..+
T Consensus 247 tk~pv~el~---~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l 323 (370)
T KOG1007|consen 247 TKFPVQELP---GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQL 323 (370)
T ss_pred CCccccccC---CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccc
Confidence 54 333333 56778999999984 688999999999999955320 013
Q ss_pred EEecCCCCCCceEEeCCC-eeEEEeccceEEEecccc
Q 020021 287 ASWMSFDTEPPVIKWTPG-SLMFVTGSSELSFWIPDL 322 (332)
Q Consensus 287 ~~~~~~~~~v~~l~~sp~-~~~l~t~~~d~~~w~~~~ 322 (332)
.++..|...|.+++||.- ==.|++-++|.++-.-..
T Consensus 324 ~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 324 ETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 345578888999999774 457788888866654433
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=9.5e-16 Score=132.32 Aligned_cols=166 Identities=20% Similarity=0.351 Sum_probs=131.5
Q ss_pred EeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCC
Q 020021 116 YFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEK 194 (332)
Q Consensus 116 ~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~ 194 (332)
.+.||+++|..++|+|. ...+||||.|.+|++|.+-.+.....+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 35799999999999995 4588999999999999985543211110
Q ss_pred CCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC
Q 020021 195 GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273 (332)
Q Consensus 195 ~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg 273 (332)
-....+.||...|..++++|.. ..|++++.|.+|.+|++.+|+.+-++. |...+.++.|+.||.+|+|.+.|+
T Consensus 122 --epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 122 --EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred --cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCceeeeecccc
Confidence 0112334566677788898876 678899999999999999998776654 678899999999999999999999
Q ss_pred cEEEEECCCCceEEEecCCCC-CCceEEeCCCeeEEEeccc---e--EEEeccc
Q 020021 274 SVYAWSVRSGKEVASWMSFDT-EPPVIKWTPGSLMFVTGSS---E--LSFWIPD 321 (332)
Q Consensus 274 ~i~vWd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~t~~~---d--~~~w~~~ 321 (332)
.|||||..+++.+..-+.|.+ ....+.|-.++..+.||-+ + +.+|+++
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 999999999999988888875 4566778888888888754 3 7778763
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.5e-15 Score=132.13 Aligned_cols=189 Identities=19% Similarity=0.168 Sum_probs=134.4
Q ss_pred eEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE
Q 020021 80 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159 (332)
Q Consensus 80 ~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 159 (332)
..++|..++..++++. .|+++|+|++.+...+.....|.+.|..++|+|||+.|+|-+.| ..++|+.+++.+....
T Consensus 148 k~vaf~~~gs~latgg---~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG---TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeecc---ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 4688999988888774 48999999998888888888999999999999999999999999 8899999887543322
Q ss_pred EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-----CEEEEEcCCCeEEEEE
Q 020021 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLD 234 (332)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-----~~l~~~~~dg~i~i~d 234 (332)
.... .......|.|+-|+ ++++....-+.|+.+|
T Consensus 224 t~~~-----------------------------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 224 TPFS-----------------------------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred CCcc-----------------------------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence 1000 00112234454444 2222233334455544
Q ss_pred ccCCe---EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-ecCCCCCCceEEeCCCeeEEEe
Q 020021 235 SFRGT---LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVT 310 (332)
Q Consensus 235 ~~~~~---~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~t 310 (332)
+.... .+.... .....+.+.+++.|+||+++|-|+.||.|-|++..+-+.+.- ...|...|+.|.|+||.+.+++
T Consensus 263 ~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 263 ISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred eeeeccccccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 32211 111000 011124677899999999999999999999999988776554 3678899999999999999988
Q ss_pred ccce
Q 020021 311 GSSE 314 (332)
Q Consensus 311 ~~~d 314 (332)
.+++
T Consensus 342 vSs~ 345 (398)
T KOG0771|consen 342 VSSD 345 (398)
T ss_pred cccC
Confidence 7776
No 192
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.4e-13 Score=128.35 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=149.0
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.+.+..|...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +...........|+|+++.+++.....-+..|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 45566778889999999999999988754 469999998877543 22223234467899999988765322224579
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEE--EeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLL--WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~i--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (332)
.+||+.+++. ..+..|.......+|+|||+.++..+. ++...+ +|+.+++....
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l---------------------- 331 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL---------------------- 331 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----------------------
Confidence 9999988764 445556555677899999998887663 444333 34333221100
Q ss_pred CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
...+ ......++||||+.++..+.++ .|.+||+.+++.. .+. +.......
T Consensus 332 --------------------t~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p 384 (433)
T PRK04922 332 --------------------TFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESP 384 (433)
T ss_pred --------------------ecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCc
Confidence 0000 1123468999999988765443 6999999877654 222 11123356
Q ss_pred EECCCCCEEEEEcCC---CcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021 258 SFSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 303 (332)
Q Consensus 258 ~~spdg~~l~sgs~D---g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp 303 (332)
.|+|||++++..+.+ +.++++++. +.....+..+.+.+...+|+|
T Consensus 385 ~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 385 SFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 899999998877664 368888884 445555655666778888887
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=8.3e-13 Score=111.51 Aligned_cols=237 Identities=15% Similarity=0.236 Sum_probs=155.7
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC----CCCceeEEEEccCCc
Q 020021 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN----GWDESLRLLSLHDNK 112 (332)
Q Consensus 37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~----g~d~~v~v~d~~~~~ 112 (332)
..+++|+.|..-+ +.+.|.-.|||+.+..+....-..+..+...+..-...+.++....+ -.-+.+-+||-....
T Consensus 8 ~lsvs~NQD~ScF-ava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCF-AVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceE-EEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 3458998877555 56667778999998643322222222222222211122222222111 124679999966666
Q ss_pred eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEEEecCce--eEEEcC--CCeEEEEEe--CCEEE
Q 020021 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRP--AAAYDD--QGLVFAVAF--GGYIR 185 (332)
Q Consensus 113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~--~~~i~ 185 (332)
++..+. -..+|.++.+.++. +|.. .+..|.+|.+. ..+.+..+.....| .+.+.+ +..+++.-. -|.|+
T Consensus 87 ~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 666665 67889999998744 4333 46789999886 34444444332222 122222 223333222 48999
Q ss_pred EEECccCCCC-CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-EEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021 186 MFDARKYEKG-PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (332)
Q Consensus 186 vwd~~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg 263 (332)
+-|+...... +.. ...|.+++.+++.+-+|+++|+++..|+ |||||..+|+++.+++... ....+.+++||||.
T Consensus 163 i~dL~~~~~~~p~~---I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 163 IVDLASTKPNAPSI---INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNS 238 (346)
T ss_pred EEEhhhcCcCCceE---EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCc
Confidence 9998765442 222 2246788999999999999999999997 8999999999999998653 34677899999999
Q ss_pred CEEEEEcCCCcEEEEECCC
Q 020021 264 MFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 264 ~~l~sgs~Dg~i~vWd~~~ 282 (332)
.+||.+|+-|++.|+.+..
T Consensus 239 s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEcCCCeEEEEEeec
Confidence 9999999999999999865
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=4.7e-14 Score=119.50 Aligned_cols=274 Identities=14% Similarity=0.267 Sum_probs=181.7
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeec
Q 020021 40 MDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKG 119 (332)
Q Consensus 40 i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~ 119 (332)
.+|||+|+++|+.+.- .+-|-|.++.+..+.+.- -..|.-+.|..+...++.+.. -++.|.+|++...+.-..+..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~y--k~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAY--KDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeee--ccceEEEEEeecceeEEEecc
Confidence 4799999999998876 788889887665443322 224555677777777776542 377899999999998888998
Q ss_pred ccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEe--C--------------
Q 020021 120 HHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAF--G-------------- 181 (332)
Q Consensus 120 h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~-------------- 181 (332)
-.+.+..++|+|||+ .|.+...|-.|.+|.+.+.++....... ......+++++++.+... |
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 999999999999996 5567778999999999887764332111 122345566665555443 1
Q ss_pred ---------------------CEEEEEECccCCCCCeeEEEecCCC-CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe
Q 020021 182 ---------------------GYIRMFDARKYEKGPFDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 239 (332)
Q Consensus 182 ---------------------~~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~ 239 (332)
+.+.+||.- ++..-.+.+. ..+..+++||-++++++|+.|+.+++.+-.+-+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~------Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNV------LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecch------hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 223333321 1101111122 256778999999999999999999886543322
Q ss_pred EeEEe----------------------------------------------------------ee-----cCCCCCcceE
Q 020021 240 LLSTY----------------------------------------------------------NV-----KPVSRNSTLE 256 (332)
Q Consensus 240 ~~~~~----------------------------------------------------------~~-----~~~~~~~~~~ 256 (332)
...++ .. .+.+...+..
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 21111 00 0111112335
Q ss_pred EEECCCCCEEEEEcCC--CcEEEEECCCCceEEEecCCCCCCceEEeCCCee--EEEeccceEEEecccccc
Q 020021 257 ASFSPEGMFVISGSGD--GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL--MFVTGSSELSFWIPDLSK 324 (332)
Q Consensus 257 v~~spdg~~l~sgs~D--g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~t~~~d~~~w~~~~~~ 324 (332)
++||+|..|+||-.+. ..+-+||+++.+. +...-...+|....|+|..- .+++|++-+.+|.|....
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 8999999999998432 3799999988654 33333345788999999864 445667778889876543
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.6e-15 Score=133.34 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=180.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 115 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~ 115 (332)
.-..+.++.+|.+|+-|+.-|-|-.+|-.++.....+..-. .|..+.|-.+..+++.+- ...+.+||- .|..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDN-NGTELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecC-CCcEEe
Confidence 34578899999999999999999999999988877665432 466677776666665543 456888885 457788
Q ss_pred EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCC
Q 020021 116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG 195 (332)
Q Consensus 116 ~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~ 195 (332)
+++.| ..|..+.|-|..=.|++++.-|-+++-|+++++.+..+....
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-------------------------------- 251 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-------------------------------- 251 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC--------------------------------
Confidence 88866 568999999988899999999999999998887643332110
Q ss_pred CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021 196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 275 (332)
Q Consensus 196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i 275 (332)
..+..++.+|-..++-.|..+|+|.+|...+.+++..+- .|..++.++++.++|+|+||.+.|..+
T Consensus 252 -----------G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 252 -----------GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred -----------CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccce
Confidence 123345667777788899999999999998877765544 477889999999999999999999999
Q ss_pred EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccceEEEecc
Q 020021 276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIP 320 (332)
Q Consensus 276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~ 320 (332)
+|||+.+...+.+... +-+...++||.-|.+.++-+.-+++|--
T Consensus 318 kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 318 KIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKD 361 (545)
T ss_pred eEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehh
Confidence 9999998877766544 3456789998888777777777999954
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=1.1e-13 Score=129.47 Aligned_cols=260 Identities=12% Similarity=0.171 Sum_probs=170.8
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce--EE----EeecccccEEEEEe
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--LR----YFKGHHDRVVSLSL 129 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~--~~----~~~~h~~~V~~v~~ 129 (332)
..+.||++......+..-..+..|.+++|.|....++++. ..+++|.+||+..+.. .. ....|..+|+.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG--~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGG--CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEee--ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 4789999987633333333455789999999877766654 3589999999987654 21 23468899999998
Q ss_pred cCCC--CeEEEeeCCCcEEEEeCCCceEE------EEEE--------ecCceeEEEcC--CCeEEEEEeCCEEEEEECcc
Q 020021 130 CSSK--DCFISGSLDRTVLLWDQRAEKCQ------GLLR--------VQGRPAAAYDD--QGLVFAVAFGGYIRMFDARK 191 (332)
Q Consensus 130 ~~~~--~~l~s~s~Dg~i~iWd~~~~~~~------~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~i~vwd~~~ 191 (332)
..+. .-|+|+|.||.|..|+++.-..- .... ..+.....+.+ ...++.++.+|.|.--+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7543 45999999999999987543220 0000 01112334433 33455555668776633222
Q ss_pred CCCCC---ee-EEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc-CCeEeEEeeecCCCCCcceEEEECCCC-CE
Q 020021 192 YEKGP---FD-IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEG-MF 265 (332)
Q Consensus 192 ~~~~~---~~-~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~v~~spdg-~~ 265 (332)
..... +. +.....+...++++.++|=+..+...+.|-+++||... ...++..+. .+...+.+++|||-- -.
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCceE
Confidence 22222 01 11223456789999999988766666669999999976 444443333 233457899999976 46
Q ss_pred EEEEcCCCcEEEEECCC--CceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 266 VISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
+|++..||.|.+||+.. .+.+.+........+.+.|+++++.++.|... +.++..
T Consensus 457 F~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred EEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 77778899999999954 33455554456667889999999999999876 455543
No 197
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.7e-13 Score=127.81 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=135.6
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~ 135 (332)
.+|.+||... ...+.+..+...+....|+|+++.+++.+..+.+..+.+||+.+++... +..+........|+|||+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4699999864 4445565666677888999999999887654445679999998876533 3344445557899999987
Q ss_pred EE-EeeCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021 136 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 212 (332)
Q Consensus 136 l~-s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v 212 (332)
++ +.+.++ .|.+||+.++...... .+.......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt--------------------------------------------~~~~~~~~~ 297 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLT--------------------------------------------NHFGIDTEP 297 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECc--------------------------------------------cCCCCccce
Confidence 65 556665 4777777655321100 001112346
Q ss_pred EEcCCCCEEEEEcC-CC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 020021 213 KFSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV 286 (332)
Q Consensus 213 ~~s~dg~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~ 286 (332)
+|||||+.++..+. +| .|+++|+.+++... +.. ........+|||||++|+..+.++ .|++||+.+++..
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 89999998887654 44 47777776665432 221 112233579999999998765443 6999999877643
Q ss_pred EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 287 ASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.+. +.......+|+|||++++..+.
T Consensus 374 -~Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 374 -TLT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred -ECC-CCCCCCCceECCCCCEEEEEEe
Confidence 333 3334556799999998776554
No 198
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.5e-13 Score=123.25 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=146.7
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +...........|+|++..++++... ++..
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~ 264 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSR--DGNS 264 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEcc--CCCc
Confidence 34566788889999999999999887754 359999999887543 32223334567899999988765422 4444
Q ss_pred EEE--EccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCC--CceEEEEEEecCceeEEEcCCCeEEEE
Q 020021 104 RLL--SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 104 ~v~--d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (332)
.+| |+.++. ...+..|........|+|||+.++..+. ++...+|.+. ++...
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---------------------- 321 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---------------------- 321 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----------------------
Confidence 555 555544 4556556666677899999998876654 4666777542 11110
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccCCeEeEEeeecCCCCCcce
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTL 255 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 255 (332)
++ ...+ .......|||||++++..+.++ .|.+||+.+++... +.. . ....
T Consensus 322 ------~l--------------t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~--~~~~ 374 (427)
T PRK02889 322 ------RV--------------TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--T--TRDE 374 (427)
T ss_pred ------EE--------------ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--C--CCcc
Confidence 00 0000 0112357999999998776554 69999998776432 211 1 1224
Q ss_pred EEEECCCCCEEEEEcCCC---cEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021 256 EASFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304 (332)
Q Consensus 256 ~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~ 304 (332)
...|+|||++|+.++.++ .+++-++ +++....+..+.+.+...+|+|-
T Consensus 375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 375 SPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 568999999999887655 3666666 45555556556677788888883
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.4e-12 Score=110.70 Aligned_cols=152 Identities=13% Similarity=0.226 Sum_probs=108.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCC--CEEEEecCCCCCceeEEEEccCC
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHP--TTVIYSSKNGWDESLRLLSLHDN 111 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~--~~~~~~s~~g~d~~v~v~d~~~~ 111 (332)
.+|.+|.++. ++|+..=.+. |.|||+.+.+.++++..- ..+--.++++++. .++++-++.. .+.|.+||..+-
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl 163 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-SGDVVLFDTINL 163 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-CceEEEEEcccc
Confidence 5677888875 4555555554 999999999999998654 2222244555544 4666643322 578999999998
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeCCCc-EEEEeCCCceEEEEEEecCce----eEEEcCCCeEEEEEe-CCEEE
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQGRP----AAAYDDQGLVFAVAF-GGYIR 185 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~i~ 185 (332)
+.+..+..|.+.+.+++|+++|.++||+|..|| ||++.+.+++....++....+ ..+|++++.+++++. .++|.
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 999999999999999999999999999999997 689998888776666543322 234455555554443 35666
Q ss_pred EEECc
Q 020021 186 MFDAR 190 (332)
Q Consensus 186 vwd~~ 190 (332)
+|.+.
T Consensus 244 iFKL~ 248 (391)
T KOG2110|consen 244 IFKLE 248 (391)
T ss_pred EEEec
Confidence 66554
No 200
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.8e-13 Score=123.50 Aligned_cols=267 Identities=19% Similarity=0.270 Sum_probs=183.0
Q ss_pred HHhcccceeEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeE----------------------------
Q 020021 20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLK---------------------------- 70 (332)
Q Consensus 20 ~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~---------------------------- 70 (332)
.....++.+.|. |...-+.|..+|||.|+ |||-+--.|++||+.+.....
T Consensus 38 ~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 38 YRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred HHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc
Confidence 334566666664 66677889999999985 677788899999997644321
Q ss_pred Eeeeccc-------ce----eEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEe
Q 020021 71 TINSKKY-------GV----DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISG 139 (332)
Q Consensus 71 ~~~~~~~-------~v----~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~ 139 (332)
++..|.. .| ..++++.....++++++ ...|.-.+++.|..+.-+..-.+.+++|..++-..+|+.|
T Consensus 117 ~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 117 TIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG 193 (703)
T ss_pred eeeehhhcCeeeeeecCcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEec
Confidence 1111110 00 12223333333444432 3467778999999888888888999999999988899999
Q ss_pred eCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021 140 SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219 (332)
Q Consensus 140 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 219 (332)
+.||.|.+||.+.......+...... . ..+ -......|+++.|+.||=
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v--~-------------------------s~p-----g~~~~~svTal~F~d~gL 241 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSV--N-------------------------SHP-----GGDAAPSVTALKFRDDGL 241 (703)
T ss_pred ccCceEEEecchhhhhheeeeccccc--C-------------------------CCc-----cccccCcceEEEecCCce
Confidence 99999999999876655444321110 0 000 001123688999999999
Q ss_pred EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC--CCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCc
Q 020021 220 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP 297 (332)
Q Consensus 220 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd--g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~ 297 (332)
.+++|+.+|.+.|+|++..+++..... ...-++..+.|-+. +..++|. ....++|||-.+|+....+-.- ..++
T Consensus 242 ~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lN 317 (703)
T KOG2321|consen 242 HVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLN 317 (703)
T ss_pred eEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc-CCcC
Confidence 999999999999999998877654331 22346667788665 4566665 3468999999999987766443 3589
Q ss_pred eEEeCCCeeEEEeccce---EEEecccccccc
Q 020021 298 VIKWTPGSLMFVTGSSE---LSFWIPDLSKLG 326 (332)
Q Consensus 298 ~l~~sp~~~~l~t~~~d---~~~w~~~~~~~~ 326 (332)
.+++-|++.++.+|-.. ..++.|++..-+
T Consensus 318 D~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 318 DFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred ceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 99999998888777554 666777775433
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=3.5e-14 Score=127.09 Aligned_cols=189 Identities=17% Similarity=0.232 Sum_probs=143.7
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
++.++.+...+|.+.|.+-.|+|||.-|+|+|.||.|+||.- +|-...++.....+|.+++|.|+...++++.. +
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g----~ 166 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG----G 166 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC----C
Confidence 567788889999999999999999999999999999999984 45555555566678999999999999998863 3
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC--ceeEEEcCCCeEEEEE
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQGLVFAVA 179 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 179 (332)
.+.+-.++-+.-+-..+.|.+-|.+++|++..+.++||+.|-..++||-.. ..+..-..+. ...+++.|+ ..++++
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeee
Confidence 466666665555666789999999999999999999999999999999643 3222222222 234555565 556666
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i 232 (332)
+-++.|+=. .....+..+++|+||+.+++|+..|.+.+
T Consensus 245 S~nt~R~~~---------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYNTARFSS---------------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeecC---------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 555555211 12246778999999999999999998655
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.1e-12 Score=122.56 Aligned_cols=226 Identities=11% Similarity=0.055 Sum_probs=147.9
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~---D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+...+....|+|+++.+++.....-..
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 344567788899999999999999888764 468999999888653 3444444556778999999887654322245
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (332)
.|.++|+.+++. ..+..+........|+|||+.++..+. +| .|.+||+..+......
T Consensus 271 ~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt------------------- 330 (435)
T PRK05137 271 DIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS------------------- 330 (435)
T ss_pred eEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee-------------------
Confidence 678889888765 446666666778899999998887663 33 3555555433211100
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---CeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTL 255 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 255 (332)
. .........+||||+.++....+ ..|.+||+..+.. ..+.. ...+.
T Consensus 331 -----------------------~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~----~~~~~ 380 (435)
T PRK05137 331 -----------------------F--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS----GFLVE 380 (435)
T ss_pred -----------------------c--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC----CCCCC
Confidence 0 00123346799999998876543 3688889765443 22221 11244
Q ss_pred EEEECCCCCEEEEEcCC------CcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021 256 EASFSPEGMFVISGSGD------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 303 (332)
Q Consensus 256 ~v~~spdg~~l~sgs~D------g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp 303 (332)
...|+|||++|+..+.+ ..+++.|+..++ ...+. .+..+...+|+|
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-EREVP-TPGDASDPAWSP 432 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-eEEcc-CCCCccCcccCC
Confidence 57899999998776543 258888886544 34443 244466677877
No 203
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.7e-13 Score=124.10 Aligned_cols=252 Identities=14% Similarity=0.208 Sum_probs=175.6
Q ss_pred eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEE
Q 020021 68 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVL 146 (332)
Q Consensus 68 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~ 146 (332)
|-..+.+|...|.+++..+.|..+++|+. |+++|+|.+.++.++++++ -.+.|.+++|+|.++ .++.+..+..+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsd---DGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSD---DGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCC---CCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence 33457889999999999999999998875 8899999999999998776 456899999999765 344444444455
Q ss_pred EEeCCCceEE--------------------------------------EEEEec-CceeEEEcCCCeEEEEEeC----CE
Q 020021 147 LWDQRAEKCQ--------------------------------------GLLRVQ-GRPAAAYDDQGLVFAVAFG----GY 183 (332)
Q Consensus 147 iWd~~~~~~~--------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~----~~ 183 (332)
+-+..-+..+ .+++.. ......++..|.++++... ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 5443211000 011110 1123345556666665431 45
Q ss_pred EEEEECccCCC-CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 184 IRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 184 i~vwd~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
|-|.++..... .+|. .....+..+.|.|...++++++. ..|+|||+...+++..+. .....+..++.+|.
T Consensus 548 VliHQLSK~~sQ~PF~-----kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFR-----KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPN 618 (733)
T ss_pred EEEEecccccccCchh-----hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecCC
Confidence 66776653221 1111 11245788999999998888765 489999998876665543 23456777899999
Q ss_pred CCEEEEEcCCCcEEEEECCCC-ceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEe----------ccccccccccc
Q 020021 263 GMFVISGSGDGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFW----------IPDLSKLGAYV 329 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w----------~~~~~~~~~~~ 329 (332)
|..|+.|+.|+.+..+|+.-. +..++++.|...+..|+||+.--+|++|+.| +.++ +|-+-.|..+.
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 999999999999999999643 4577889999999999999999999999987 3333 34455566666
Q ss_pred ccC
Q 020021 330 GRK 332 (332)
Q Consensus 330 ~~~ 332 (332)
||+
T Consensus 699 gH~ 701 (733)
T KOG0650|consen 699 GHE 701 (733)
T ss_pred Cce
Confidence 663
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=8.8e-14 Score=113.31 Aligned_cols=212 Identities=16% Similarity=0.219 Sum_probs=142.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEE
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLR 115 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~ 115 (332)
.|++-+++|.+++|+.|+.+|+|-+..++.... +. + -+ +....+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s-----~s-------a-~~----------------------~gk~~iv 56 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS-----GS-------A-EP----------------------PGKLKIV 56 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc-----cc-------c-CC----------------------CCCccee
Confidence 355667899999999999999999887653210 00 0 00 0112234
Q ss_pred EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCC
Q 020021 116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG 195 (332)
Q Consensus 116 ~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~ 195 (332)
..++|..+|..+.|+ .++|++|+. |.|+-|..+....- .+.=++|.+...
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es------------------------~~~K~lwe~~~P--- 106 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEES------------------------LATKRLWEVKIP--- 106 (325)
T ss_pred eccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhh------------------------ccchhhhhhcCc---
Confidence 457899999999998 356777655 99999987543210 011133433211
Q ss_pred CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021 196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 275 (332)
Q Consensus 196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i 275 (332)
...- .....+++++-..|....++.++.|+.++-||+.+|+..++++ +|...+.++.--..+..++||++||++
T Consensus 107 -~~~~--~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 107 -MQVD--AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred -cccC--cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccE
Confidence 1110 1123468888898877777777799999999999999999888 566777777774556678899999999
Q ss_pred EEEECCCCceEEEecCC---------C-CCCceEEeCCCeeEEEecc-ceEEEecc
Q 020021 276 YAWSVRSGKEVASWMSF---------D-TEPPVIKWTPGSLMFVTGS-SELSFWIP 320 (332)
Q Consensus 276 ~vWd~~~~~~~~~~~~~---------~-~~v~~l~~sp~~~~l~t~~-~d~~~w~~ 320 (332)
||||.++++++..+-.. . ..|-+++ -+...++.|+ ..+.+|..
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHL 234 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEec
Confidence 99999999988765322 1 2233444 3444666654 45899964
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.1e-12 Score=120.20 Aligned_cols=221 Identities=11% Similarity=0.092 Sum_probs=139.3
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~ 135 (332)
..|.+||.+..+. +.+..+...+...+|+|+++.+++.+..+-+..+.+||+.+++... +......+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 3788889875544 3344455567889999999999876543335679999998876432 2222333456899999998
Q ss_pred EEEe-eCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021 136 FISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 212 (332)
Q Consensus 136 l~s~-s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v 212 (332)
|+.. +.+| .|.+||+.++...... .....+...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt--------------------------------------------~~~~~~~~~ 292 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVT--------------------------------------------DGRSNNTEP 292 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEcc--------------------------------------------CCCCCcCce
Confidence 8754 4455 4777777654321110 001123457
Q ss_pred EEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCceE
Q 020021 213 KFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEV 286 (332)
Q Consensus 213 ~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~~ 286 (332)
.|||||+.++..+.+ + .|+.+|+.+++.. .+.. .........|||||++|+..+.+ ..|++||+.+++.
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~- 367 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV- 367 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-
Confidence 899999988777654 3 4566677666543 2221 11223457899999999887544 3688999987763
Q ss_pred EEecCCCCCCceEEeCCCeeEEEeccce-----EEEecccccccccc
Q 020021 287 ASWMSFDTEPPVIKWTPGSLMFVTGSSE-----LSFWIPDLSKLGAY 328 (332)
Q Consensus 287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~d-----~~~w~~~~~~~~~~ 328 (332)
..+... ......+|+|||++++.++.+ +.+++.+...+..+
T Consensus 368 ~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 368 QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 333321 223467899999998887654 44455554444433
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=2e-14 Score=130.90 Aligned_cols=199 Identities=18% Similarity=0.311 Sum_probs=140.3
Q ss_pred CcEEEEEECC-CCCEEEEEeCCCcEEEEEcCCC-------eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021 35 GRISSMDFHK-SSSYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (332)
Q Consensus 35 ~~I~~i~~s~-dg~~l~tgs~D~tv~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~ 106 (332)
..|+.+.|+| |...||.++.|+.|+||.+..+ +.-..+..|...|..+.|+|-...++..+ .+|.+|++|
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a--syd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA--SYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh--hccceeeee
Confidence 4588889987 5678999999999999998643 22345678888899999999776655543 358999999
Q ss_pred EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC----c-eeEEEc-CCCeEEEEEe
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG----R-PAAAYD-DQGLVFAVAF 180 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----~-~~~~~~-~~~~~~~~~~ 180 (332)
|+.+++....|.||++.|.+++|+|+|++++|.+.||+|++++.+++..- ....++ + ....+. ++..++.+++
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-v~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-VYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-cccCCCCccCcceeEEEEecCcEEEEecc
Confidence 99999988899999999999999999999999999999999998765321 111111 1 112233 3344555666
Q ss_pred C----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccC
Q 020021 181 G----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR 237 (332)
Q Consensus 181 ~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~ 237 (332)
| ..|.+||.......++....+.... ....=.+.+|. .++++|-.|..|.+|.+.-
T Consensus 785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccchhhhhhhhhhhccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEecC
Confidence 5 4788888776554444333322111 11112345554 4567788899999998643
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.1e-12 Score=119.59 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=136.3
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~ 135 (332)
..|.+||... ...+.+..+...+...+|+|+++.+++.+..+-+..|.+||+.+++. ..+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence 4788888754 44455666666788899999999998876433357899999988765 345566677788999999997
Q ss_pred EE-EeeCCCc--EEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021 136 FI-SGSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 212 (332)
Q Consensus 136 l~-s~s~Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v 212 (332)
|+ +.+.++. |.+||+.++...... .+.......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt--------------------------------------------~~~~~~~~~ 295 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLT--------------------------------------------DSPAIDTSP 295 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEcc--------------------------------------------CCCCccCce
Confidence 65 6666665 555566554321100 001122346
Q ss_pred EEcCCCCEEEEEcC-CC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCceE
Q 020021 213 KFSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEV 286 (332)
Q Consensus 213 ~~s~dg~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~~ 286 (332)
.|||||+.++..+. +| .|+++|+..++... +.. .........|||||++|+..+.+ ..|.+||+..+. .
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~ 370 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E 370 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e
Confidence 89999998887654 33 68888987665432 221 12233456899999999887654 368888985543 3
Q ss_pred EEecCCCCCCceEEeCCCeeEEEecc
Q 020021 287 ASWMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 287 ~~~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
..+. ....+..++|+|||++++..+
T Consensus 371 ~~lt-~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 371 RILT-SGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred Eecc-CCCCCCCCeECCCCCEEEEEE
Confidence 3332 233467789999998876643
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=4e-12 Score=115.36 Aligned_cols=279 Identities=13% Similarity=0.146 Sum_probs=166.5
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCce
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 102 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~ 102 (332)
+.+..+.+.........+.|+|||+++..++.|+.|.++|+.+++.+.++..... ...++++++++.++.+.. .++.
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~--~~~~ 101 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANY--EPGT 101 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEE--ETTE
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEec--CCCc
Confidence 3566677776555555688999999999999999999999999999999876553 466899999999887753 4789
Q ss_pred eEEEEccCCceEEEeecc-------cccEEEEEecCCCCeEEEeeCC-CcEEEEeCCCceEEE--EEEecC-ceeEEEcC
Q 020021 103 LRLLSLHDNKYLRYFKGH-------HDRVVSLSLCSSKDCFISGSLD-RTVLLWDQRAEKCQG--LLRVQG-RPAAAYDD 171 (332)
Q Consensus 103 v~v~d~~~~~~~~~~~~h-------~~~V~~v~~~~~~~~l~s~s~D-g~i~iWd~~~~~~~~--~~~~~~-~~~~~~~~ 171 (332)
+.++|.++.+.++.+... ..++.++..++....++..-.| +.|-+-|....+... .+.... .....+++
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 999999999988876532 3467888888888867666665 566666766544332 222221 23467778
Q ss_pred CCeEEEEEe--CCEEEEEECccCCCCCeeEEEecCC--CCCcee---------EEEcCCCCEEEEEcCCCeEEEEEccCC
Q 020021 172 QGLVFAVAF--GGYIRMFDARKYEKGPFDIFSVGGD--ISDANV---------VKFSNDGRLMLLTTMEGHIHVLDSFRG 238 (332)
Q Consensus 172 ~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~---------v~~s~dg~~l~~~~~dg~i~i~d~~~~ 238 (332)
+++++.++. .+.|.++|.+.... ......+.. ...... -..+..+...++.-....+.+||....
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~--v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKL--VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEE--EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred ccceeeecccccceeEEEeeccceE--EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 887666653 47899999765321 111111100 001000 111223333323333345667888888
Q ss_pred eEeEEeeecCCCCCcceEEEECCCCCEEEEE----cCCCcEEEEECCCCceEEEecCCC-CCCceEEeCCCeeEEEe
Q 020021 239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISG----SGDGSVYAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVT 310 (332)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg----s~Dg~i~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~t 310 (332)
+.+.++.... .. .-+.-+||++++... ...++|.|+|.++.+.+.++.... ..+.++.|++||+.+-.
T Consensus 260 kvv~~I~~~G---~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 260 KVVKTIPTQG---GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp SEEEEEE-SS---SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred eEEEEEECCC---Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence 8888877432 22 456779999999998 445899999999987777764332 24789999999976533
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=7.9e-13 Score=111.68 Aligned_cols=240 Identities=14% Similarity=0.169 Sum_probs=175.8
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
.+|.---.+|+|-+|++|+..+|.+-....|.||..... +..++++.|...|+.++|.|..+.|+.++. |..-.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnay 80 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAY 80 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCcc
Confidence 445556689999999999999999999999999987644 467899999999999999999999999865 88899
Q ss_pred EEEc-cCCc--eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021 105 LLSL-HDNK--YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 105 v~d~-~~~~--~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (332)
||.. ..++ +.-.+..|+..++++.|+|..+.||.||.-+.|.+|=++.+.--
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW------------------------- 135 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW------------------------- 135 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-------------------------
Confidence 9988 4444 34456779999999999999999999999999999876543211
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC------------------CeEeEE
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR------------------GTLLST 243 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~------------------~~~~~~ 243 (332)
|-.+..++ ...+.|.++.+.|.+-++++|+.|+..++|...- |+++.+
T Consensus 136 -----WVsKhikk---------PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 136 -----WVSKHIKK---------PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred -----ehhhhhCC---------ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 00000000 1124577888888888888888888888876421 122222
Q ss_pred eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
+. ...+.+..+.|+|+|..|+=.+.|+++.+=|-.... .+.+...-.-+..++.|-.+. .++.++.
T Consensus 202 ~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~ 268 (361)
T KOG1523|consen 202 AS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGY 268 (361)
T ss_pred hc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCC
Confidence 21 234677889999999999999999999999986654 344433333456667775443 3334433
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.5e-12 Score=112.66 Aligned_cols=289 Identities=14% Similarity=0.135 Sum_probs=184.9
Q ss_pred CCCCccccccceeE--ecHHHHhcccceeEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeeeEEe-----
Q 020021 2 VGSQSEREDKVSLE--LSEEILQSMEVGMSFRDYNGRISSMDFHKSS--SYLVTASDDESIRLYDVTAATCLKTI----- 72 (332)
Q Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~~~~~~----- 72 (332)
||--++..+.+-++ .+-++-.+.........-...|+++.|..++ ..+...+.|..+.+.+.....+...+
T Consensus 21 Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~ 100 (412)
T KOG3881|consen 21 VGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKT 100 (412)
T ss_pred EeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccc
Confidence 34444444444332 2222233344444444455678888886544 56777778888888888766654433
Q ss_pred -eecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc----eEEEeecccccEEEEEecC-CCCeEEEeeCC--Cc
Q 020021 73 -NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YLRYFKGHHDRVVSLSLCS-SKDCFISGSLD--RT 144 (332)
Q Consensus 73 -~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~----~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~D--g~ 144 (332)
......|.. .......++++.. ++.+.+|..+.+- .+..+..+ ..+..+.-++ +...+++||.. ..
T Consensus 101 ~~l~~~~I~g--l~~~dg~Litc~~---sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 101 VSLGTKSIKG--LKLADGTLITCVS---SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred cccccccccc--hhhcCCEEEEEec---CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 122222322 2233345555544 5789999987332 23333333 3344555555 44577779998 89
Q ss_pred EEEEeCCCceEEEEEEecCc---------e----eEEEcC---CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC
Q 020021 145 VLLWDQRAEKCQGLLRVQGR---------P----AAAYDD---QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD 208 (332)
Q Consensus 145 i~iWd~~~~~~~~~~~~~~~---------~----~~~~~~---~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~ 208 (332)
+++||+...+.+ +..... + ...|-+ ...++++..-+++|+||.+..++ |...+... ..+
T Consensus 175 lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~~--E~~ 249 (412)
T KOG3881|consen 175 LKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDFL--ENP 249 (412)
T ss_pred eeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEeccc--cCc
Confidence 999998776433 322111 1 122323 33555566679999999996544 34333332 357
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE-eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021 209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA 287 (332)
Q Consensus 209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~ 287 (332)
++++..-|+|..+.++..-|.+..||.++++++.. +. ...+.+..+-.+|.++++|++|.|+.+||+|+.+.+.++
T Consensus 250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred ceeeeecCCCcEEEEecccchhheecccCceeeccccC---CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 88899999999999999999999999999988765 33 345677889999999999999999999999999977665
Q ss_pred EecCCCCCCceEEeCCCe
Q 020021 288 SWMSFDTEPPVIKWTPGS 305 (332)
Q Consensus 288 ~~~~~~~~v~~l~~sp~~ 305 (332)
.. ...+.+++|-+.++-
T Consensus 327 kv-YvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 327 KV-YVKSRLTFILLRDDV 343 (412)
T ss_pred hh-hhhccccEEEecCCc
Confidence 43 234556777776653
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=1.3e-13 Score=123.46 Aligned_cols=165 Identities=20% Similarity=0.336 Sum_probs=113.7
Q ss_pred cccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeE
Q 020021 121 HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI 199 (332)
Q Consensus 121 ~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~ 199 (332)
+..|+++.|-| +...|+.+-++|.+.++|..-.. ....+.....+++..++.. .|.-.... .+...
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t~p~~~~~k~~~~f~i~------t~ksk~~r-NPv~~ 285 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GATAPSYQALKDGDQFAIL------TSKSKKTR-NPVAR 285 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCCCCcccccCCCCeeEEe------eeeccccC-Cccce
Confidence 36899999988 44577777889999999862110 0111112222222222222 11111000 12222
Q ss_pred EEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021 200 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 200 ~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd 279 (332)
+.. -...++..+|||||+++|+-+.||.++|||..+.+++..++-.. ....+|+|||||+||++|++|--|.||.
T Consensus 286 w~~--~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 286 WHI--GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred eEe--ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEE
Confidence 221 12368889999999999999999999999998877665443221 3456899999999999999999999999
Q ss_pred CCCCceEEEecCCCCCCceEEeCC
Q 020021 280 VRSGKEVASWMSFDTEPPVIKWTP 303 (332)
Q Consensus 280 ~~~~~~~~~~~~~~~~v~~l~~sp 303 (332)
+..++.+.--.+|..+|+.|+|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 999999988899999999999983
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.8e-13 Score=112.75 Aligned_cols=251 Identities=14% Similarity=0.182 Sum_probs=148.6
Q ss_pred hcccceeEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeee--EEeeecccceeEEEEccCCCE---EEEec
Q 020021 22 QSMEVGMSFR-DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTT---VIYSS 95 (332)
Q Consensus 22 ~~~~~~~~l~-~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~---~~~~s 95 (332)
.+.+..-.++ .|...|+.+.--|+ ..|.|-+.|..+.+|++..+.-+ +.+....-..-..++.+.++. ++..-
T Consensus 43 qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp 121 (323)
T KOG0322|consen 43 QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYP 121 (323)
T ss_pred ecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecC
Confidence 3344444566 57788999988886 68889999999999999764322 222211111111222222221 11111
Q ss_pred CCCCCceeEEEEccCCceEEEe----ecccccEEEEEecC-CCC--eEEEeeCCCcEEEEeCCCceEEEEEEecCc----
Q 020021 96 KNGWDESLRLLSLHDNKYLRYF----KGHHDRVVSLSLCS-SKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGR---- 164 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~~~~~~~~----~~h~~~V~~v~~~~-~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---- 164 (332)
..|.|. +.+-|......+... .+..+.+++..+.. .++ .++.|-.+|.+.+||++++... ++.+..
T Consensus 122 ~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~--~~~~~~~kv~ 198 (323)
T KOG0322|consen 122 SRGSDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI--IQLPQSSKVE 198 (323)
T ss_pred Ccccch-hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee--eccccccccc
Confidence 122222 222232222222222 23456677766432 333 5677788999999999887332 222211
Q ss_pred --------ee--EEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEE-EecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021 165 --------PA--AAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIF-SVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (332)
Q Consensus 165 --------~~--~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i 232 (332)
+. ..+.+ ...=+.++.+..+..|.+.... +.+.+- ...-....++.+.+=||++++++++=|++|++
T Consensus 199 ~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~-gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRV 277 (323)
T KOG0322|consen 199 SPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST-GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRV 277 (323)
T ss_pred cchhhccCcceeeeechhhcCCcCCCccccceeeeecccc-CcccccceEEecCCCccceEEccCCcEEeecccCCcEEE
Confidence 11 11111 0011122234567777764321 111110 00011246778899999999999999999999
Q ss_pred EEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 233 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 233 ~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
|..++...+..+. .|...+.+++|+||...+|+||.|+.|.+|++
T Consensus 278 yswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 278 YSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999888776 45678899999999999999999999999986
No 213
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=1.2e-12 Score=109.29 Aligned_cols=232 Identities=12% Similarity=0.109 Sum_probs=151.4
Q ss_pred ccCCCcEEEEEECCCC-----CEEEEEeCCCcEEEEEcCC--Cee--eEEee-----ecccceeEEEEccCCCEEEEecC
Q 020021 31 RDYNGRISSMDFHKSS-----SYLVTASDDESIRLYDVTA--ATC--LKTIN-----SKKYGVDLVCFTSHPTTVIYSSK 96 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg-----~~l~tgs~D~tv~iwd~~~--~~~--~~~~~-----~~~~~v~~~~~~~~~~~~~~~s~ 96 (332)
-.|.-+++.+-|.|+. .+|||.+ -.+|+|.+.. .+. ...+. .+..+.++..|..-...++..+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS- 169 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS- 169 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee-
Confidence 4688999999999986 3566655 4699999873 211 11121 2233566666665444444333
Q ss_pred CCCCceeEEEEccCCce---EEEeecccccEEEEEecCCC-CeEEEeeCCCcEEEEeCCCceEEEEEEe--cC--ceeEE
Q 020021 97 NGWDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRV--QG--RPAAA 168 (332)
Q Consensus 97 ~g~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~--~~~~~ 168 (332)
+.|-++.+||++++.. ..-|-.|..+|..++|...+ +.|||+|.||.+|++|++.-.- .++.. +. .+-..
T Consensus 170 -SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 170 -SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLR 247 (364)
T ss_pred -cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCccee
Confidence 3489999999998743 33467899999999999855 4899999999999999986432 22211 11 11111
Q ss_pred E--cC-CCeEE-EEEeC-CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeE--
Q 020021 169 Y--DD-QGLVF-AVAFG-GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTL-- 240 (332)
Q Consensus 169 ~--~~-~~~~~-~~~~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~-- 240 (332)
. .+ +..++ +.+.| ..|.+.|+|... ..+..+.+|.+.|+.+++.|.. ..+++++.|-.+-+||+...-.
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN 324 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence 1 11 22233 23333 689999998743 2345677899999999999965 6788999999999999865322
Q ss_pred eEEeeecCCCCCcceEEEECC-CCCEEEEEc
Q 020021 241 LSTYNVKPVSRNSTLEASFSP-EGMFVISGS 270 (332)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~sp-dg~~l~sgs 270 (332)
+..-.........+..+.|+| ....++.+.
T Consensus 325 ~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 325 GEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 111011112345677888985 566777664
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.3e-12 Score=118.92 Aligned_cols=206 Identities=12% Similarity=0.126 Sum_probs=131.5
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~ 135 (332)
..|.+||.. +...+.+..+...+...+|+|+++.+++.+...-...+.+||+.+++... +......+....|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 456777764 44444555556677888999999999887643334579999998886543 3334455668899999998
Q ss_pred EE-EeeCCCcEEEEeCC--CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021 136 FI-SGSLDRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 212 (332)
Q Consensus 136 l~-s~s~Dg~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v 212 (332)
|+ +.+.|+...+|.+. .+... . +..+.......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~-~-------------------------------------------lt~~~~~~~~~ 289 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLR-R-------------------------------------------LTQSSGIDTEP 289 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcE-E-------------------------------------------CCCCCCCCcCe
Confidence 76 66788887777542 11100 0 00011122346
Q ss_pred EEcCCCCEEEEEcC-CCeEEEE--EccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 020021 213 KFSNDGRLMLLTTM-EGHIHVL--DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV 286 (332)
Q Consensus 213 ~~s~dg~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~ 286 (332)
.|||||+.++..+. +|...+| |...+... .+... .......+|||||++|+..+.++ .|++||+.+++.
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~---g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~- 364 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT---GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV- 364 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC---CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-
Confidence 79999998876554 4555555 44444432 22111 12223568999999999877655 699999988764
Q ss_pred EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 287 ASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
..+.. .......+|+||+++++..+.
T Consensus 365 ~~lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 365 TALTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred EEccC-CCCccCceECCCCCEEEEEEe
Confidence 33332 233467899999998877654
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.53 E-value=4.6e-13 Score=120.04 Aligned_cols=256 Identities=13% Similarity=0.143 Sum_probs=155.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccce-eEEEEc-------cCCCEEEEecCCCCCcee
Q 020021 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGV-DLVCFT-------SHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v-~~~~~~-------~~~~~~~~~s~~g~d~~v 103 (332)
.|...|-|+.|+.....+.+++++..++-||+.+.+. +.+...+.-+ +..... .....++.+++ |+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~---DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSN---DGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcC---CceE
Confidence 3555566888887776776666666666666654322 1111111000 000000 01123444443 5566
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE--ecCceeEEEcCCCeEEEEEeC
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 181 (332)
.+.+- +++.-+....|.+.|.+-.|+|||.-|+|++.||.|++|. +++-...++. ....-++.+.|+..-+.-..+
T Consensus 88 ~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 88 VILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred EEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 65542 3444556778999999999999999999999999999997 4443322221 112234556665433222333
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 261 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp 261 (332)
+.+.+=.+.. ......-..|..-+.++.+++...++++|+.|=.-++||.. |..+.+- ..|..++++++|.|
T Consensus 166 ~h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S---~~~ey~ITSva~np 237 (737)
T KOG1524|consen 166 GHISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS---AAEEYAITSVAFNP 237 (737)
T ss_pred CeEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC---Chhccceeeeeecc
Confidence 4444333221 11122233455668889999999999999999999999976 4444322 24667899999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 262 EGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
| ..++.+|. .++| .. ....+.|..++|||||.+++.|.+.
T Consensus 238 d-~~~~v~S~-nt~R---------~~--~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 238 E-KDYLLWSY-NTAR---------FS--SPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred c-cceeeeee-eeee---------ec--CCCccceEEEEEcCCCceeeccccC
Confidence 9 55555543 3343 11 1233568889999999999988775
No 216
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.5e-12 Score=124.93 Aligned_cols=242 Identities=15% Similarity=0.248 Sum_probs=158.2
Q ss_pred eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeeccc---ccEEEEEecC--CCCeEEEeeCCCcEEEEeCCCc
Q 020021 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHH---DRVVSLSLCS--SKDCFISGSLDRTVLLWDQRAE 153 (332)
Q Consensus 79 v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~---~~V~~v~~~~--~~~~l~s~s~Dg~i~iWd~~~~ 153 (332)
...+.|++....++++.. ...|++||.+.++.+..|..+. ..|+.+.+-. |...+++|+.||.||||+--..
T Consensus 1067 pk~~~~hpf~p~i~~ad~---r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADD---RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CceeeecCCCceeEEcCC---cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345667777777776532 4679999999988877776543 4688887654 4558999999999999973222
Q ss_pred -----eEEEEEE-ec------CceeE--EEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc-CC
Q 020021 154 -----KCQGLLR-VQ------GRPAA--AYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS-ND 217 (332)
Q Consensus 154 -----~~~~~~~-~~------~~~~~--~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s-~d 217 (332)
+.+.-.. +. ..... .+. ..|.++++|.-..||+||...... ..-... +....++++.-+ +.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--~~diP~-~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--VADIPY-GSSTLVTALSADLVH 1220 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--Eeeccc-CCCccceeecccccC
Confidence 2221111 00 01112 222 245555555568999999875321 111111 111233443332 34
Q ss_pred CCEEEEEcCCCeEEEEEccCCeE---eEEeeecCCCCCc--ceEEEECCCCC-EEEEEcCCCcEEEEECCCCceE--EEe
Q 020021 218 GRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNS--TLEASFSPEGM-FVISGSGDGSVYAWSVRSGKEV--ASW 289 (332)
Q Consensus 218 g~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~--~~~v~~spdg~-~l~sgs~Dg~i~vWd~~~~~~~--~~~ 289 (332)
|.++++|..||.|++||.+.... +..++ .|... |..+.+-+.|. .|++|+.||.|++||++..... .+.
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYR---EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeec---ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee
Confidence 79999999999999999876543 23333 23333 77888888664 5999999999999999764222 222
Q ss_pred cCC---CCCCceEEeCCCeeEEEeccc-eEEEeccccccccccc
Q 020021 290 MSF---DTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYV 329 (332)
Q Consensus 290 ~~~---~~~v~~l~~sp~~~~l~t~~~-d~~~w~~~~~~~~~~~ 329 (332)
..| .+..+++..|+....+++|+. .+++|+.+..+|+.++
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence 232 234899999999999999984 5999999988887764
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=2.5e-12 Score=106.41 Aligned_cols=134 Identities=19% Similarity=0.396 Sum_probs=94.3
Q ss_pred eEEEEccC-CceEEEeec-ccccEEEEEecCCCCeEE--EeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021 103 LRLLSLHD-NKYLRYFKG-HHDRVVSLSLCSSKDCFI--SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 103 v~v~d~~~-~~~~~~~~~-h~~~V~~v~~~~~~~~l~--s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (332)
..+|.+.. +.....+.- ..++|..++|+|+++.|+ +|..++.|.+||++.. .+..+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-~i~~~------------------- 98 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-KIFSF------------------- 98 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc-EeEee-------------------
Confidence 44554422 233444432 345799999999999864 4456789999998521 11110
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNSTL 255 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 255 (332)
.....+.+.|||+|++++.++. .|.+.+||..+.+.+...+ ...+.
T Consensus 99 --------------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t 147 (194)
T PF08662_consen 99 --------------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDAT 147 (194)
T ss_pred --------------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEE
Confidence 0124567899999999998864 4679999999888876654 23467
Q ss_pred EEEECCCCCEEEEEcC------CCcEEEEECCCCceEEE
Q 020021 256 EASFSPEGMFVISGSG------DGSVYAWSVRSGKEVAS 288 (332)
Q Consensus 256 ~v~~spdg~~l~sgs~------Dg~i~vWd~~~~~~~~~ 288 (332)
.++|||||+++++++. |..++||+. .|+.+..
T Consensus 148 ~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred EEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence 8999999999999975 788999998 4776654
No 218
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.52 E-value=9.4e-13 Score=109.81 Aligned_cols=217 Identities=15% Similarity=0.191 Sum_probs=148.8
Q ss_pred CCceeEEEEccCCce---EEEeecccccEEEEEecC-CCCeEEEeeCC-------CcEEEEeCCCceEEEE---E----E
Q 020021 99 WDESLRLLSLHDNKY---LRYFKGHHDRVVSLSLCS-SKDCFISGSLD-------RTVLLWDQRAEKCQGL---L----R 160 (332)
Q Consensus 99 ~d~~v~v~d~~~~~~---~~~~~~h~~~V~~v~~~~-~~~~l~s~s~D-------g~i~iWd~~~~~~~~~---~----~ 160 (332)
.|++|.+.++..... -+.|..|.++|+.++-+| +.+.|+|+-.| -.+-||.+..+..... + .
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 467777777655332 346778899999999999 55677777553 2367998754322110 1 1
Q ss_pred e-----cCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEe--cCCCCCceeEEEcC--CCCEEEEEcCCCeEE
Q 020021 161 V-----QGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV--GGDISDANVVKFSN--DGRLMLLTTMEGHIH 231 (332)
Q Consensus 161 ~-----~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~--~~~~~~v~~v~~s~--dg~~l~~~~~dg~i~ 231 (332)
+ ....+..+.|++..+++-.+..|.+|++.....-....... ....-...+-++|| ||..+++ ..|++++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~ 196 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQ 196 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEE
Confidence 1 12356778888877777779999999987654311111110 01112344556777 6776554 5788999
Q ss_pred EEEccCCeEeEEeeecCCCCCcceEEEECCCC-CEEEEEcCCCcEEEEECCCCc-eEEEecCCCCCCceEEeCCC-eeEE
Q 020021 232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVYAWSVRSGK-EVASWMSFDTEPPVIKWTPG-SLMF 308 (332)
Q Consensus 232 i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~~~~~v~~l~~sp~-~~~l 308 (332)
.||+++.+....++ ..|...+..+.|.|+- .+|+||++||.|+|||.++.+ .+.++..|...|+++.|+|- .+++
T Consensus 197 ~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999766544443 2455678889999975 578899999999999997654 57888999999999999995 5677
Q ss_pred Eeccce--EEEe
Q 020021 309 VTGSSE--LSFW 318 (332)
Q Consensus 309 ~t~~~d--~~~w 318 (332)
.++++| +.+|
T Consensus 275 Ls~~SDs~V~Ls 286 (370)
T KOG1007|consen 275 LSGGSDSAVNLS 286 (370)
T ss_pred EecCCCceeEEE
Confidence 888888 6666
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=2.2e-11 Score=102.99 Aligned_cols=183 Identities=13% Similarity=0.223 Sum_probs=132.2
Q ss_pred ccccceeEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeeeEEeeecccceeEEEEcc
Q 020021 8 REDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTS 86 (332)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~ 86 (332)
+-+.-.|.+||+.+..--.... ...+|.+|.+.++ .|+ .-....|.+|... +.+.++.+.....+--.++..+
T Consensus 71 ky~pNkviIWDD~k~~~i~el~---f~~~I~~V~l~r~--riV-vvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCIIELS---FNSEIKAVKLRRD--RIV-VVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred CCCCceEEEEecccCcEEEEEE---eccceeeEEEcCC--eEE-EEecCeEEEEEcCCChhheeeeecccCCCceEeecC
Confidence 3445567888877644332222 4578999999864 454 3456789999987 5566677665443333556666
Q ss_pred CCCEEEEecCCCCCceeEEEEccCCce--EEEeecccccEEEEEecCCCCeEEEeeCCCc-EEEEeCCCceEEEEEEecC
Q 020021 87 HPTTVIYSSKNGWDESLRLLSLHDNKY--LRYFKGHHDRVVSLSLCSSKDCFISGSLDRT-VLLWDQRAEKCQGLLRVQG 163 (332)
Q Consensus 87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~--~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~~~ 163 (332)
.....+.+..+-.-++|++-|+...+. ...+..|...|.+++.+.+|..+||+|..|| |||||..++..+..++..
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG- 223 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG- 223 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-
Confidence 555544444433457899999877554 4788899999999999999999999999997 799999888766554321
Q ss_pred ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC
Q 020021 164 RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (332)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~ 237 (332)
.+.+.+.+++|||++++++++++.|+++||.++.
T Consensus 224 ----------------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 ----------------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ----------------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 1234677889999999999999999999988764
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=3.4e-12 Score=124.25 Aligned_cols=229 Identities=13% Similarity=0.140 Sum_probs=142.7
Q ss_pred ccceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCC-------CeeeEEeeecccceeEEEEccCCCEEEEec
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 95 (332)
..++..|..|...|..++.+++. .+++|||.||+||+||... ..+..++......+..+.+-+.+..++.++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 55777899999999999987655 9999999999999999852 233445554556788888888999998886
Q ss_pred CCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEEEecCceeEEEcCCC-
Q 020021 96 KNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQG- 173 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~- 173 (332)
. ||.|++.++...+.. ++.++... +=|.. .+. ...+..... ....
T Consensus 1118 ~---DG~v~~~~id~~~~~-------------------~~~~~~~r-----i~n~~~~g~---vv~m~a~~~---~~~S~ 1164 (1431)
T KOG1240|consen 1118 K---DGSVRVLRIDHYNVS-------------------KRVATQVR-----IPNLKKDGV---VVSMHAFTA---IVQSH 1164 (1431)
T ss_pred C---CCeEEEEEccccccc-------------------cceeeeee-----cccccCCCc---eEEeecccc---cccce
Confidence 5 788999887552110 00111100 00000 000 000110000 0111
Q ss_pred eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021 174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (332)
Q Consensus 174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (332)
.++.+..-+.|..||+|....... .......+-+++++.+|.+..++.|+..|.+.+||++-+.++..+... +..+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~--lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~ 1240 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWR--LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAP 1240 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHh--hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCC
Confidence 223333345666666664322111 111122356899999999999999999999999999988888776543 2245
Q ss_pred ceEEEECC---CCCEEEEEc--CCCcEEEEECCCCceEEEe
Q 020021 254 TLEASFSP---EGMFVISGS--GDGSVYAWSVRSGKEVASW 289 (332)
Q Consensus 254 ~~~v~~sp---dg~~l~sgs--~Dg~i~vWd~~~~~~~~~~ 289 (332)
+..+...| .....++++ ..+.|.+|++.+|.+...+
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 55555443 445555554 4779999999998765444
No 221
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=1.6e-11 Score=114.14 Aligned_cols=223 Identities=15% Similarity=0.126 Sum_probs=141.7
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.+.+..+...+.+.+|+|||++|+.++.+ ..|.+||+.+++... +..+...+...+|+|+++.+++.....-+..+
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 35566677788999999999999887754 489999999876543 22233344567899999988765433224568
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF 180 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (332)
.+||+.+++.. .+..|........|+|+++.|+..+. ++ .|.++|+.+++....
T Consensus 261 ~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l---------------------- 317 (417)
T TIGR02800 261 YVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL---------------------- 317 (417)
T ss_pred EEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe----------------------
Confidence 89999887543 34445555556789999998876654 33 344555443321100
Q ss_pred CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---eEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 181 GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 181 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
.. .........+||||++++.+..++ .|.++|+.++.... +.. . ......
T Consensus 318 --------------------~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~---~-~~~~~p 370 (417)
T TIGR02800 318 --------------------TF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD---T-GLDESP 370 (417)
T ss_pred --------------------ec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC---C-CCCCCc
Confidence 00 001234568999999999887775 89999987754422 211 1 112345
Q ss_pred EECCCCCEEEEEcCCC---cEEEEECCCCceEEEecCCCCCCceEEe
Q 020021 258 SFSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKW 301 (332)
Q Consensus 258 ~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~~~~~v~~l~~ 301 (332)
+|+|||++|+..+.++ .+++.+. +++....+....+.+..++|
T Consensus 371 ~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 371 SFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred eECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 8999999998887765 4556554 45555555444444444444
No 222
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.48 E-value=9.1e-10 Score=98.22 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=159.8
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeEEeeeccc-------ceeEEEEcc
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTS 86 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~----------D~tv~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~ 86 (332)
.+...++..-..+-. + +||||+.|..+.. +..|.+||+.+++.+..+..... ....+++++
T Consensus 37 ~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred CEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence 344444443333332 4 8999988766655 78999999999999988864322 123678999
Q ss_pred CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC-ceEE-EEEEe--c
Q 020021 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQ-GLLRV--Q 162 (332)
Q Consensus 87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~-~~~~-~~~~~--~ 162 (332)
+++.++..... -++.+-+.|+.+++.+..+.--. ...-...++ ..+..-+.||....-.+.. ++.. ..... .
T Consensus 115 dgk~l~V~n~~-p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e--~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 115 DNKTLLFYQFS-PSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN--DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred CCCEEEEecCC-CCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC--CccEEEeecCceEEEEecCCCceEEeeeeeecC
Confidence 99988876532 26889999999998877655311 111111111 1122234455444332211 1110 01010 1
Q ss_pred ------CceeEEEcCCCeEEEEEeCCEEEEEECccCCCC---CeeEEEecC-----CCCCceeEEEcCCCCEEEEEc---
Q 020021 163 ------GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKG---PFDIFSVGG-----DISDANVVKFSNDGRLMLLTT--- 225 (332)
Q Consensus 163 ------~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~---~~~~~~~~~-----~~~~v~~v~~s~dg~~l~~~~--- 225 (332)
..+ .....++..+.+++.|.|.+.|+...... +...+..+. .+....-++++|||+.+.+..
T Consensus 191 ~~~~v~~rP-~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 191 EDEYLINHP-AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred CccccccCC-ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 111 11222667777787899999996433221 122221111 223445599999998776632
Q ss_pred -------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEEc-CCCcEEEEECCCCceEEEecCCC
Q 020021 226 -------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVYAWSVRSGKEVASWMSFD 293 (332)
Q Consensus 226 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~~ 293 (332)
..++|.++|..+++.+..+.. ...+..++||||++ +|++.. .++.|.+.|..+++.++++....
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 225899999999999887763 24667899999999 877665 57889999999999998874443
No 223
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.48 E-value=1e-11 Score=116.36 Aligned_cols=242 Identities=14% Similarity=0.143 Sum_probs=157.2
Q ss_pred CCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCee--eEE----eeecccceeEEEEccCCCE--EEEecCCCCCceeE
Q 020021 34 NGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLR 104 (332)
Q Consensus 34 ~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~v~ 104 (332)
..+|.++.|+|.. ++||.|.++|.|-+||+..+.. ... ...|..++..+.|..+... +++++. |+.|.
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i~ 318 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSIC 318 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcEe
Confidence 4679999999865 7789999999999999976543 221 2346667888888765554 887775 88999
Q ss_pred EEEccCCce-E-----EEee------cccccEEEEEecC-CCCeEEEeeCCCcEEE---EeCCCceE-----EEEEEecC
Q 020021 105 LLSLHDNKY-L-----RYFK------GHHDRVVSLSLCS-SKDCFISGSLDRTVLL---WDQRAEKC-----QGLLRVQG 163 (332)
Q Consensus 105 v~d~~~~~~-~-----~~~~------~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~i---Wd~~~~~~-----~~~~~~~~ 163 (332)
.|++..-.. . .... .-...++++.|.+ +...|+-|+.+|.|.. ++.+.... ......+.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 998654221 1 1111 1234688999998 6678999999998876 22222210 10111111
Q ss_pred --ceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCe
Q 020021 164 --RPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT 239 (332)
Q Consensus 164 --~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~ 239 (332)
.......| ...++.++.|-++++|...... .++ +....+...+..+++||.. .+++++..+|.+.+||+....
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-~Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-SPL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCC-Ccc--hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 11222233 2356666669999999876322 122 2222233348889999987 567778889999999986543
Q ss_pred EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
..-..... ........+.|+++|+.|+.|...|++.+|++..
T Consensus 476 ~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 22111111 1234445678999999999999999999999964
No 224
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.1e-11 Score=111.32 Aligned_cols=225 Identities=12% Similarity=0.144 Sum_probs=143.1
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
+.+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +......+....|+|+++.+++.....-+..+.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4566677789999999999999877655 368889998886543 222222344578999999887654322245788
Q ss_pred EEEccCCceEEEeecccccEEEEEecCCCCeEEEeeC-CCc--EEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (332)
++|+.+++.. .+..+........|+||++.++..+. ++. |.++|+.+++.....
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt---------------------- 327 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT---------------------- 327 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----------------------
Confidence 8899887643 45556666677889999997765553 333 444455443321100
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
..+ .......+||||+.++....+ + .|.++|+.+++.. .+.. . .......
T Consensus 328 --------------------~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~--~~~~~p~ 380 (430)
T PRK00178 328 --------------------FVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--T--SLDESPS 380 (430)
T ss_pred --------------------cCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--C--CCCCCce
Confidence 000 011235799999988876543 3 5888998877643 2221 1 1122458
Q ss_pred ECCCCCEEEEEcCC---CcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021 259 FSPEGMFVISGSGD---GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304 (332)
Q Consensus 259 ~spdg~~l~sgs~D---g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~ 304 (332)
|+|||++++-.+.+ ..++++++. +.....+..+.+.+...+|+|-
T Consensus 381 ~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 381 VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 99999999887654 357788874 4444445555566777788873
No 225
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.2e-11 Score=112.07 Aligned_cols=224 Identities=16% Similarity=0.124 Sum_probs=138.7
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCC-C--cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDD-E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D-~--tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
+.+..+...+.+..|||||++|+-.+.+ + .|.+||+.+++... +...........|+|+++.+++.....-...|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3444556678889999999998876654 2 58888998876432 222222234578999999887754322134588
Q ss_pred EEEccCCceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEE--EeCCCceEEEEEEecCceeEEEcCCCeEEEEEeC
Q 020021 105 LLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLL--WDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFG 181 (332)
Q Consensus 105 v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~i--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (332)
++|+++++. ..+..+........|+||++.++..+ .++...+ +|+.+++....
T Consensus 290 ~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L----------------------- 345 (448)
T PRK04792 290 VVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL----------------------- 345 (448)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-----------------------
Confidence 889887764 34555555667889999999776554 3444333 34433321100
Q ss_pred CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 182 GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 182 ~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
...+. .....++||||++++..+.+ + .|.++|+.+++... +.. . .......
T Consensus 346 -------------------t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~--~--~~d~~ps 399 (448)
T PRK04792 346 -------------------TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS--T--RLDESPS 399 (448)
T ss_pred -------------------ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC--C--CCCCCce
Confidence 00000 11235799999988776543 3 56678887776432 211 1 1112347
Q ss_pred ECCCCCEEEEEcCCC---cEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021 259 FSPEGMFVISGSGDG---SVYAWSVRSGKEVASWMSFDTEPPVIKWTP 303 (332)
Q Consensus 259 ~spdg~~l~sgs~Dg---~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp 303 (332)
|+|||++|+..+.++ .+++++. +++....+..+.+.+...+|+|
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 999999887765543 3778887 5666666666666677888887
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=128.20 Aligned_cols=247 Identities=16% Similarity=0.243 Sum_probs=180.0
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
...+...+++||++.|+.++.+.++.+++++|.|..||+|-+.++..+..+.+|...|+.++|+|.. + .+.|+
T Consensus 220 et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s---ss~dg 292 (1113)
T KOG0644|consen 220 ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S---SSDDG 292 (1113)
T ss_pred cchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c---CCCCC
Confidence 3456678899999999999999999999999999999999999999999999999999999999976 1 24489
Q ss_pred eeEEEEccCCceEEE---ee-cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE--EEEecCceeEEEcCCCeE
Q 020021 102 SLRLLSLHDNKYLRY---FK-GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDDQGLV 175 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~---~~-~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~~ 175 (332)
++++||..-...+.. ++ .-.+.+-.+.|...+..++|++.|++-+.|.+....+.. ++-... ..+.+..+
T Consensus 293 t~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~----ssd~~~~~ 368 (1113)
T KOG0644|consen 293 TCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR----SSDLSSIV 368 (1113)
T ss_pred ceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec----cccccccc
Confidence 999999751111111 01 123556778888899999999999999999865332211 110000 00112334
Q ss_pred EEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021 176 FAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (332)
Q Consensus 176 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 254 (332)
++.-.+-.+.+|++-.+... ..+.++...+..+.++|=. +...+++-||...|||+-.|..+..+.. .....
T Consensus 369 ~~ar~~~~~~vwnl~~g~l~----H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---gh~kl 441 (1113)
T KOG0644|consen 369 VTARNDHRLCVWNLYTGQLL----HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---GHGKL 441 (1113)
T ss_pred eeeeeeeEeeeeecccchhh----hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec---cccee
Confidence 44445677888987654221 1233555677888888855 4556789999999999999988877662 24556
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~ 286 (332)
...+||+||..++....-|.++|.....++..
T Consensus 442 ~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 442 VDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred eccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 67799999999998888899999987655543
No 227
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.7e-11 Score=106.27 Aligned_cols=245 Identities=15% Similarity=0.191 Sum_probs=168.1
Q ss_pred EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC------CceEEEeec-ccccEEEEEecCCCCeEEEeeCC
Q 020021 70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYLRYFKG-HHDRVVSLSLCSSKDCFISGSLD 142 (332)
Q Consensus 70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~------~~~~~~~~~-h~~~V~~v~~~~~~~~l~s~s~D 142 (332)
+.+..|..-|..+.|+.++..++++ |-|..+++|+++. .+++..... |...|.+++|...++.|.||+.+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SG---GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASG---GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeec---CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3455677778889999998877765 4488999999853 345555544 44899999999999999999999
Q ss_pred CcEEEEeCCCceEEEEEEecCceeEEE----cCCC-eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC
Q 020021 143 RTVLLWDQRAEKCQGLLRVQGRPAAAY----DDQG-LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND 217 (332)
Q Consensus 143 g~i~iWd~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 217 (332)
++|..-|+++.+.+-++.....-..++ +|-. .++.++.++.|.+||.|...+ +...+..+.-......+.|.|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-PISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC-CCceeeecCCCccceeeeecCC
Confidence 999999999887665554333222222 3433 445555679999999997653 3334444444456778899996
Q ss_pred C-CEEEEEcCCCeEEEEEccCCeEe-EEeee-c--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021 218 G-RLMLLTTMEGHIHVLDSFRGTLL-STYNV-K--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF 292 (332)
Q Consensus 218 g-~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~ 292 (332)
- .+|++.+..+-+.+||.+..... ..+.. . +.....-..+.|+|.|..+++--.-..=-++|+...++..-...|
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 6 67788888999999998764321 11111 1 111122356889999999998866667778898775553333333
Q ss_pred CC-------CCceEEeCCCeeEEEeccce--EEEec
Q 020021 293 DT-------EPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 293 ~~-------~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
+. .+.+++|..|.. +++|+.+ +.+|.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK 320 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence 32 456688876655 8888888 66663
No 228
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=2.6e-09 Score=95.35 Aligned_cols=263 Identities=11% Similarity=0.053 Sum_probs=161.3
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-------CCCceeEEEEccCCceEEEeeccc-------
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYLRYFKGHH------- 121 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-------g~d~~v~v~d~~~~~~~~~~~~h~------- 121 (332)
++|.+.|..+++.+.++.....+-. + ++++++.++.++.. --+..|.+||.++.+.+..+.--.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998876544433 4 99999998887640 026789999999999887776311
Q ss_pred ccEEEEEecCCCCeEEEee--CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeE
Q 020021 122 DRVVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI 199 (332)
Q Consensus 122 ~~V~~v~~~~~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~ 199 (332)
..-..++++|||+++.... .+..+-+.|+.+++.+..+..+.-...........+..+.|+......+..........
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 1234678999999887654 37899999999999888776654222222222222223334333322221111100000
Q ss_pred EEe-cCCCCC--ceeEEEcC-CCCEEEEEcCCCeEEEEEccCC-----eEeEEeeecCC----CCCcceEEEECCCCCEE
Q 020021 200 FSV-GGDISD--ANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKPV----SRNSTLEASFSPEGMFV 266 (332)
Q Consensus 200 ~~~-~~~~~~--v~~v~~s~-dg~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~----~~~~~~~v~~spdg~~l 266 (332)
..+ .+.... .+- .|++ ||+.+..+.. |.|++.|+... +....+..... .....--++++||++.+
T Consensus 185 ~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 185 TEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 000 000000 011 4566 7877666655 99999995432 22222211100 01111128999999988
Q ss_pred EEEc----------CCCcEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEecc---ceEEEeccccc
Q 020021 267 ISGS----------GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVTGS---SELSFWIPDLS 323 (332)
Q Consensus 267 ~sgs----------~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t~~---~d~~~w~~~~~ 323 (332)
+... ..+.|.++|..+++.+..+.. ..++..|+++||++ +|.+.. +++.+.+....
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 8743 224799999999998887653 45788999999998 665433 45888886443
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2e-11 Score=104.86 Aligned_cols=224 Identities=17% Similarity=0.325 Sum_probs=148.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeec-ccceeEEEEccCCCE-EEEecCCCCCceeEEEEccCC-
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDN- 111 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~s~~g~d~~v~v~d~~~~- 111 (332)
-.+..++|++--.-+|.+..|-+|||||-+. ++...++.. +..|.+++|.|.+.. ++.++. .-|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCccc
Confidence 4467888988555679999999999999876 554455443 446899999997654 555554 34888875321
Q ss_pred ---ce----------EEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021 112 ---KY----------LRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 177 (332)
Q Consensus 112 ---~~----------~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (332)
.. +....|| .+|+++.|.+||..++++|. |..|++||..++.+......
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------- 236 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---------------- 236 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc----------------
Confidence 11 1122355 78999999999999999986 56899999988765433210
Q ss_pred EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
. ...+.-+.+||||.++.+++-|+.-++|.....--..... ...+.+...
T Consensus 237 -----------------------g----lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqta 286 (445)
T KOG2139|consen 237 -----------------------G----LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTA 286 (445)
T ss_pred -----------------------C----CCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee---ccCCceeee
Confidence 0 1235568899999999999999999999643221111122 223467778
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCC-ce-----------E---EEe------c---CCCCCCceEEeCCCeeEEEec
Q 020021 258 SFSPEGMFVISGSGDGSVYAWSVRSG-KE-----------V---ASW------M---SFDTEPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 258 ~~spdg~~l~sgs~Dg~i~vWd~~~~-~~-----------~---~~~------~---~~~~~v~~l~~sp~~~~l~t~ 311 (332)
+|+|+|++|+-+.. |.=+++.+.-. +. + ..+ . --.+++.+++|.|.|.+|+.-
T Consensus 287 cWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 287 CWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred eecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 99999998776643 44455554321 10 0 011 0 113456789999998877764
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=1.4e-10 Score=107.86 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=133.6
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCe
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDC 135 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~ 135 (332)
..|.++|....+ .+.+..+...+....|+|+++.+++....+-...+.+||+.+++.. .+..+...+.++.|+||++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCE
Confidence 357788875433 3445455555777889999999988765433468999999887643 33445566777899999987
Q ss_pred EE-EeeCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeE
Q 020021 136 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVV 212 (332)
Q Consensus 136 l~-s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v 212 (332)
|+ +.+.++ .|.+||+.++...... .+.......
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~--------------------------------------------~~~~~~~~~ 283 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLT--------------------------------------------NGPGIDTEP 283 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECC--------------------------------------------CCCCCCCCE
Confidence 65 445544 4777776554321110 000112235
Q ss_pred EEcCCCCEEEEEcCC-C--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---cEEEEECCCCceE
Q 020021 213 KFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVYAWSVRSGKEV 286 (332)
Q Consensus 213 ~~s~dg~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---~i~vWd~~~~~~~ 286 (332)
.|+|||+.++..+.. + .|+++|+.+++... +.. ........+|+|||++++.++.++ .|.+||+.++..
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~- 358 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE- 358 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-
Confidence 789999988766543 3 68888887765432 221 223345678999999999988876 899999987543
Q ss_pred EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 287 ASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 287 ~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
..+... ......+|+||+++|+..+.
T Consensus 359 ~~l~~~-~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 359 RVLTDT-GLDESPSFAPNGRMILYATT 384 (417)
T ss_pred EEccCC-CCCCCceECCCCCEEEEEEe
Confidence 333222 23455689999988877654
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.42 E-value=3.8e-10 Score=102.56 Aligned_cols=255 Identities=17% Similarity=0.135 Sum_probs=154.3
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEE
Q 020021 49 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLS 128 (332)
Q Consensus 49 l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~ 128 (332)
+++-..+++|.+.|..+.+.+..+......-..+.+++++++++.++. |+.+.++|+.+++.+..++...+ -.+++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~~-~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGGN-PRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCCC-cceEE
Confidence 356778899999999999999999865433344779999998888754 78999999999999888876544 47799
Q ss_pred ecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecC--------ceeEE-EcCCCe-EEEEEe-CCEEEEEECccCCCCC
Q 020021 129 LCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG--------RPAAA-YDDQGL-VFAVAF-GGYIRMFDARKYEKGP 196 (332)
Q Consensus 129 ~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~--------~~~~~-~~~~~~-~~~~~~-~~~i~vwd~~~~~~~~ 196 (332)
+++||++++.+. .++.+.++|.++.+.+..+.... +.... ..+... ++..-. .+.|-+.|........
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999888665 68999999999988877765432 12222 233333 332333 4778777866542211
Q ss_pred eeEEEecCCCCCceeEEEcCCCCEEEE-EcCCCeEEEEEccCCeEeEEeeecCC-CCCcceE-------EEE--CCCCCE
Q 020021 197 FDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLE-------ASF--SPEGMF 265 (332)
Q Consensus 197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~-------v~~--spdg~~ 265 (332)
......+ .......|+|+|+++++ ...++.|-++|..++++......... +..+... .-| +..+.+
T Consensus 165 ~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 165 VTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred eeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 1222221 13456789999998765 46678999999999887765432111 1111111 111 223344
Q ss_pred EEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021 266 VISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~ 311 (332)
..+.-....+.+||..+.+.+..+.....+ .-++-||+++++...
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 433323346778999999999988776655 567779999988776
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=1.1e-08 Score=92.69 Aligned_cols=270 Identities=13% Similarity=0.185 Sum_probs=163.6
Q ss_pred EEEEeCC----CcEEEEEc--CCCeee--EEeeecccceeEEEEccCCCEEEEecCCC-CCceeEEEEccCC--ce--EE
Q 020021 49 LVTASDD----ESIRLYDV--TAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDESLRLLSLHDN--KY--LR 115 (332)
Q Consensus 49 l~tgs~D----~tv~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g-~d~~v~v~d~~~~--~~--~~ 115 (332)
++.|++. +.|.+|++ ++++.. ..+. ......-+++++++..+++....+ .++.|..|.+... +. +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3455655 68888887 444432 2221 223355688999998888776532 4678999988764 22 22
Q ss_pred EeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCC-ceEEEE---EEe------------cCceeEEEcCCCeEEEE
Q 020021 116 YFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQGL---LRV------------QGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 116 ~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~-~~~~~~---~~~------------~~~~~~~~~~~~~~~~~ 178 (332)
.....-..-..++++|++++|+.+. .+|++.++++.. +..... +.. +....+.+++++..+.+
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 2221223345688999999888886 589999999876 333322 111 01125677888776655
Q ss_pred Ee--CCEEEEEECccCCCCCee---EEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEcc--CCeEe--EEeeec-
Q 020021 179 AF--GGYIRMFDARKYEKGPFD---IFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSF--RGTLL--STYNVK- 247 (332)
Q Consensus 179 ~~--~~~i~vwd~~~~~~~~~~---~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~--~~~~~--~~~~~~- 247 (332)
.. .+.|.+|++..... .+. .... ..-..-+-++|+|||+++ ++...+++|.++++. .+... ......
T Consensus 161 ~dlG~D~v~~~~~~~~~~-~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTG-KLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EETTTTEEEEEEE-TTS--TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EecCCCEEEEEEEeCCCc-eEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 53 46899999865331 121 1121 122355789999999866 556778899999987 55432 222211
Q ss_pred --CCCCCcceEEEECCCCCEEEEEc-CCCcEEEEECC--CCce--EEEecCCCCCCceEEeCCCeeEEEeccc---eEEE
Q 020021 248 --PVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSVR--SGKE--VASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSF 317 (332)
Q Consensus 248 --~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~~--~~~~--~~~~~~~~~~v~~l~~sp~~~~l~t~~~---d~~~ 317 (332)
.........++++|||++|+... .+.+|.++++. +++. +..+......+..++++|+|++|+.+.. .+.+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 11122456799999999988774 46689999993 2332 3333333445789999999998876543 4888
Q ss_pred eccc
Q 020021 318 WIPD 321 (332)
Q Consensus 318 w~~~ 321 (332)
+.++
T Consensus 319 f~~d 322 (345)
T PF10282_consen 319 FDID 322 (345)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=1.6e-11 Score=101.56 Aligned_cols=115 Identities=11% Similarity=0.268 Sum_probs=92.2
Q ss_pred CCCcEEEEEECCCCCEEEE--EeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021 33 YNGRISSMDFHKSSSYLVT--ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~t--gs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~ 110 (332)
..++|.+++|+|+|+.+|. |..++++.+||+. ++.+..+. ...+..+.|+|+|+.+++++.++..+.+.+||+.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 3467999999999998654 4567899999996 66666664 34567799999999999987666678899999998
Q ss_pred CceEEEeecccccEEEEEecCCCCeEEEeeC------CCcEEEEeCCC
Q 020021 111 NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL------DRTVLLWDQRA 152 (332)
Q Consensus 111 ~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~------Dg~i~iWd~~~ 152 (332)
.+.+.... | ..++.++|+|+|++|+++.. |..++||++..
T Consensus 135 ~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 88776654 3 34789999999999999874 78899999853
No 234
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.40 E-value=2.5e-11 Score=102.74 Aligned_cols=199 Identities=17% Similarity=0.186 Sum_probs=144.4
Q ss_pred ccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc---eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC-C
Q 020021 76 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ-R 151 (332)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~---~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~-~ 151 (332)
..+|++-+|.++.+.++.+.. ...+-+|...... ..+++..|...|++++|+|..++++|++.|+.-.+|.. .
T Consensus 10 ~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred cCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 456888899999999988764 4578888876654 57889999999999999999999999999999999987 3
Q ss_pred CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEE
Q 020021 152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 231 (332)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~ 231 (332)
.++...++.+ .. ....+.+|.+||.+..+++++.-..|.
T Consensus 87 ~~~WkptlvL--------------------------------------lR---iNrAAt~V~WsP~enkFAVgSgar~is 125 (361)
T KOG1523|consen 87 GGTWKPTLVL--------------------------------------LR---INRAATCVKWSPKENKFAVGSGARLIS 125 (361)
T ss_pred CCeeccceeE--------------------------------------EE---eccceeeEeecCcCceEEeccCccEEE
Confidence 3333222211 00 012357789999999999999999999
Q ss_pred EEEccCCeEe--EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC-----CC-------------CceEEEecC
Q 020021 232 VLDSFRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV-----RS-------------GKEVASWMS 291 (332)
Q Consensus 232 i~d~~~~~~~--~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~-----~~-------------~~~~~~~~~ 291 (332)
++-...-.-- .....++ ....+.+++|.|++-.||+||.|+.+||+.. +. |..+..+..
T Consensus 126 Vcy~E~ENdWWVsKhikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS 204 (361)
T ss_pred EEEEecccceehhhhhCCc-cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence 9876432110 0001112 3467788999999999999999999999964 11 111122224
Q ss_pred CCCCCceEEeCCCeeEEEeccce--EEEec
Q 020021 292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWI 319 (332)
Q Consensus 292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~ 319 (332)
..+.+..+.|+|+|..|+-.+-| +.+=+
T Consensus 205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 45678889999999999887776 55444
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4.9e-12 Score=113.84 Aligned_cols=207 Identities=15% Similarity=0.217 Sum_probs=136.8
Q ss_pred EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce---eEEEc---CCCeEEEEEeCCEEEEEE
Q 020021 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYD---DQGLVFAVAFGGYIRMFD 188 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~i~vwd 188 (332)
..|.||++.|++++|+.+|.+|+|||.|-.+.|||.-..+.+..+...... ++.|- .+..+++++.|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 468899999999999999999999999999999998777766666543321 22222 345677788899999999
Q ss_pred CccCCCCCe------eEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEee--------ecCCCCCc
Q 020021 189 ARKYEKGPF------DIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYN--------VKPVSRNS 253 (332)
Q Consensus 189 ~~~~~~~~~------~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~ 253 (332)
+...+.+.. .......|...|-.++..|++ ..+-+++.||+|+-+|++..+.-..-. +.+ ....
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~-~lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP-QLIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch-hhhe
Confidence 875432211 122233455567778889999 778889999999999997643211100 000 0111
Q ss_pred ceEEEECCC-CCEEEEEcCCCcEEEEECCC--------Cc----------eEEEe-cCCC---C-----C---CceEEeC
Q 020021 254 TLEASFSPE-GMFVISGSGDGSVYAWSVRS--------GK----------EVASW-MSFD---T-----E---PPVIKWT 302 (332)
Q Consensus 254 ~~~v~~spd-g~~l~sgs~Dg~i~vWd~~~--------~~----------~~~~~-~~~~---~-----~---v~~l~~s 302 (332)
.-++..+|. -.+||.|+.|--.+++|... ++ ++..+ ..|- . . .+-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 225678885 47888999999999999421 11 11111 1111 1 1 2448899
Q ss_pred CCee-EEEe-ccceEEEecccc
Q 020021 303 PGSL-MFVT-GSSELSFWIPDL 322 (332)
Q Consensus 303 p~~~-~l~t-~~~d~~~w~~~~ 322 (332)
|+|. +|++ +++.|.+++...
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecC
Confidence 9974 5555 555588887644
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=7.5e-10 Score=103.49 Aligned_cols=205 Identities=12% Similarity=0.102 Sum_probs=128.7
Q ss_pred cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE
Q 020021 57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136 (332)
Q Consensus 57 tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l 136 (332)
.|.++|.+.++ .+.+..+...+....|+|+++.+++.+...-...+.+||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777877544 34454555567788999999999887644324578999998876533 33333445578999999977
Q ss_pred E-EeeCCC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEE
Q 020021 137 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213 (332)
Q Consensus 137 ~-s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~ 213 (332)
+ +.+.++ .|.+||+.++...... .+........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt--------------------------------------------~~~~~~~~~~ 293 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVT--------------------------------------------NHPAIDTEPF 293 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcc--------------------------------------------cCCCCcCCeE
Confidence 6 555555 4666676554321100 0001123457
Q ss_pred EcCCCCEEEEEcC-CC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-C--cEEEEECCCCceEE
Q 020021 214 FSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVYAWSVRSGKEVA 287 (332)
Q Consensus 214 ~s~dg~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g--~i~vWd~~~~~~~~ 287 (332)
|||||+.++..+. +| .|+++|+.+++... +... ........|||||++|+..+.+ + .|.+||+.+++. .
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~---~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~ 368 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV---GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R 368 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC---CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-E
Confidence 9999988776654 33 68888887776432 2211 1122346899999999877653 3 588999987754 3
Q ss_pred EecCCCCCCceEEeCCCeeEEEeccc
Q 020021 288 SWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 288 ~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.+.. ........|+|||++++..+.
T Consensus 369 ~lt~-~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 369 ILTD-TSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EccC-CCCCCCceECCCCCEEEEEEe
Confidence 3322 222335689999998876553
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.35 E-value=3.2e-12 Score=114.69 Aligned_cols=99 Identities=21% Similarity=0.371 Sum_probs=86.1
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 109 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~ 109 (332)
+.=-++.|...+|+|||.+||+.|.|+.+||+|..+.+.+...+..=.+..++||+|++++|+++ |.|.-|.||.+.
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG---GEDDLVtVwSf~ 362 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG---GEDDLVTVWSFE 362 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec---CCcceEEEEEec
Confidence 33345689999999999999999999999999999887766555444567899999999999987 458899999999
Q ss_pred CCceEEEeecccccEEEEEecC
Q 020021 110 DNKYLRYFKGHHDRVVSLSLCS 131 (332)
Q Consensus 110 ~~~~~~~~~~h~~~V~~v~~~~ 131 (332)
.++.+..-+||+..|..|+|.|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 9999999999999999999983
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=1.6e-10 Score=98.88 Aligned_cols=245 Identities=20% Similarity=0.323 Sum_probs=155.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-----eeEEeeeccc------------ceeEEEEccCCCE--EEEe
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-----CLKTINSKKY------------GVDLVCFTSHPTT--VIYS 94 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~~~~~~~--~~~~ 94 (332)
..-|++|.|+..|.+||||..+|.|-++.-+... ....++.|.. .|..+.|.+++.. ++.+
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568999999999999999999999999654322 1222333322 2445666665552 2322
Q ss_pred cCCCCCceeEEEEccCCce-----------------------------------EEEe-ecccccEEEEEecCCCCeEEE
Q 020021 95 SKNGWDESLRLLSLHDNKY-----------------------------------LRYF-KGHHDRVVSLSLCSSKDCFIS 138 (332)
Q Consensus 95 s~~g~d~~v~v~d~~~~~~-----------------------------------~~~~-~~h~~~V~~v~~~~~~~~l~s 138 (332)
. -|.++++|-+..... .+.+ ..|+-.|+++.++.|...++|
T Consensus 105 t---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 105 T---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred c---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 2 288999998753211 1112 368888999999999999988
Q ss_pred eeCCCcEEEEeCCC-ceEEEEE--Eec-------CceeEEEcCC--CeEEEEEeCCEEEEEECccCCCCC--eeEEEec-
Q 020021 139 GSLDRTVLLWDQRA-EKCQGLL--RVQ-------GRPAAAYDDQ--GLVFAVAFGGYIRMFDARKYEKGP--FDIFSVG- 203 (332)
Q Consensus 139 ~s~Dg~i~iWd~~~-~~~~~~~--~~~-------~~~~~~~~~~--~~~~~~~~~~~i~vwd~~~~~~~~--~~~~~~~- 203 (332)
+ .|=.|.+|+++- .++.... +.. ....+.++|. ..+..+++.|+||+-|+|...... ...+...
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 7 567899998753 2222111 111 0123455553 344556678999999998532110 0011110
Q ss_pred ---------CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEc-cCCeEeEEeeecCC---------CCCcc---eEEEECC
Q 020021 204 ---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDS-FRGTLLSTYNVKPV---------SRNST---LEASFSP 261 (332)
Q Consensus 204 ---------~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~---------~~~~~---~~v~~sp 261 (332)
.-.+.+..+.||+.|+++++..- -+|++||+ ...+++.++..+.. ...++ ..++||-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11246788999999999998754 48999998 33444444432211 11222 3589999
Q ss_pred CCCEEEEEcCCCcEEEEECCCC
Q 020021 262 EGMFVISGSGDGSVYAWSVRSG 283 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~~ 283 (332)
++.+++|||....++++++..|
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999996544
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.34 E-value=3.7e-12 Score=112.48 Aligned_cols=192 Identities=17% Similarity=0.219 Sum_probs=140.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
..|..+.|-|-.-+|++++.-|.++.-|+.+|+.+..+......+...+-.|....+-.+- ..++|.+|.....+++
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~skePL 286 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNSKEPL 286 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCCcchH
Confidence 4677889999988999999999999999999999888877766777777777766555553 3789999999999999
Q ss_pred EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE-CccCC
Q 020021 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD-ARKYE 193 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd-~~~~~ 193 (332)
..+..|.++|.++++.++|.++||.|.|..++|||++.-.....+..+.......-.+..+++++.+..+.+|. .....
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGS 366 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCC
Confidence 99999999999999999999999999999999999987665545444322222222334566788888999994 32211
Q ss_pred C---CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021 194 K---GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (332)
Q Consensus 194 ~---~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i 232 (332)
. .++...... ..|..+.|-|=..+|..|-..|--.+
T Consensus 367 ~~~~~pYm~H~~~---~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 367 GHGETPYMNHRCG---GPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred CCCCcchhhhccC---cccccceeccHHHeeeccccCCceeE
Confidence 1 111111111 25677778777666666655554333
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=2.7e-11 Score=116.39 Aligned_cols=200 Identities=16% Similarity=0.252 Sum_probs=147.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc----ceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
-.+.|+.-.+..+...++.+..+..+-|||...+..+..+..... ....+-+++..-++++++. -+.+.+|+.
T Consensus 86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~ 162 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKP 162 (967)
T ss_pred ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEec
Confidence 345566666777788999999999999999987766655543321 1222334455555666554 568999998
Q ss_pred cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 188 (332)
Q Consensus 109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd 188 (332)
...+....+.||.+.|..+.++-||++++|.|.|+++|+|++.+.+... .++++...|+|
T Consensus 163 ~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------~~~fgHsaRvw- 222 (967)
T KOG0974|consen 163 HEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------CTGFGHSARVW- 222 (967)
T ss_pred cccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------cccccccceeE-
Confidence 7544334689999999999999999999999999999999998765321 12233334444
Q ss_pred CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (332)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s 268 (332)
.++|.|. .+++.+.|-+.++|+.. ++.+..+.. +....+++++..++...++|
T Consensus 223 ----------------------~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~--h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 223 ----------------------ACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDE--HSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred ----------------------EEEeccc--eeEEeccceEEEEEecc-cceehhhhh--hhhcceeEEEEcCCceEEEe
Confidence 4677777 88999999999999754 555555543 23457788999999999999
Q ss_pred EcCCCcEEEEECCC
Q 020021 269 GSGDGSVYAWSVRS 282 (332)
Q Consensus 269 gs~Dg~i~vWd~~~ 282 (332)
++.|+.+++|++..
T Consensus 276 ~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 276 GGNDSTLKLWDLNG 289 (967)
T ss_pred eccCcchhhhhhhc
Confidence 99999999999865
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=1.7e-08 Score=91.53 Aligned_cols=275 Identities=15% Similarity=0.179 Sum_probs=161.5
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeC----CCcEEEEEcCCC--ee--eEEeeecccceeEEEEccCCCEEEE
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASD----DESIRLYDVTAA--TC--LKTINSKKYGVDLVCFTSHPTTVIY 93 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~----D~tv~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~ 93 (332)
+.++....+. -....+-++++|++++|.++.. ++.|..|++... +. +...........-+++.++++.++.
T Consensus 25 g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 25 GTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp TEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE
T ss_pred CCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE
Confidence 3444444432 2233556789999999988776 579999988753 33 3333323333456889999999888
Q ss_pred ecCCCCCceeEEEEccC-CceEEE---ee----------cccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCce--EE
Q 020021 94 SSKNGWDESLRLLSLHD-NKYLRY---FK----------GHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEK--CQ 156 (332)
Q Consensus 94 ~s~~g~d~~v~v~d~~~-~~~~~~---~~----------~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~--~~ 156 (332)
+.- .++++.++++.. +..... +. .-.....++.++|++++++.... ...|.++++.... ..
T Consensus 104 any--~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 104 ANY--GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EET--TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred EEc--cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 753 378999999977 333221 11 11234678999999998777643 2368888886554 32
Q ss_pred E--EEEecC---ceeEEEcCCCeEEEEEe--CCEEEEEECccCCCCCeeE---EEec---CC-CCCceeEEEcCCCCEEE
Q 020021 157 G--LLRVQG---RPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDI---FSVG---GD-ISDANVVKFSNDGRLML 222 (332)
Q Consensus 157 ~--~~~~~~---~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~~---~~~~---~~-~~~v~~v~~s~dg~~l~ 222 (332)
. .+..+. ---..+++++.++.+.. ++.|.++++.... +.+.. .... .. ......+++||||+++.
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence 2 222221 12357778776665554 6899999877221 22221 1111 01 11456789999999766
Q ss_pred EE-cCCCeEEEEEcc--CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc-CCCcEEEEEC--CCCceEEEec-CCCCC
Q 020021 223 LT-TMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVYAWSV--RSGKEVASWM-SFDTE 295 (332)
Q Consensus 223 ~~-~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs-~Dg~i~vWd~--~~~~~~~~~~-~~~~~ 295 (332)
++ ...+.|.+|++. ++++...-.. +........++++|+|++|+.+. .++.|.+|++ .+|.....-. ..-..
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~ 339 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS 339 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCC
Confidence 54 567899999983 3443222111 12233456799999999999886 5668999977 4555432221 11234
Q ss_pred CceEEe
Q 020021 296 PPVIKW 301 (332)
Q Consensus 296 v~~l~~ 301 (332)
+.||.|
T Consensus 340 p~ci~f 345 (345)
T PF10282_consen 340 PVCIVF 345 (345)
T ss_dssp EEEEEE
T ss_pred CEEEeC
Confidence 566665
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.5e-09 Score=96.89 Aligned_cols=281 Identities=14% Similarity=0.233 Sum_probs=168.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEE-------ecCCCCCceeEEEEc
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY-------SSKNGWDESLRLLSL 108 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~s~~g~d~~v~v~d~ 108 (332)
+....++|++|.++| -+.+..++|++..++..+.+.... .+..+-|+|-+.++.. .....-...+++|++
T Consensus 36 ~~~v~~~S~~G~lfA-~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFA-YSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred cceeEEEcCCCcEEE-EEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 355667888876665 677788999999887543333222 4567788887766522 111122456889999
Q ss_pred cCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEecCceeEEEcCCC--eEEEEE---eC-
Q 020021 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQG--LVFAVA---FG- 181 (332)
Q Consensus 109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~---~~- 181 (332)
+++.....++.....-+...|+.|....+=- ..+.+.+++...-+ ....++..+.....+++.+ ..+++- .+
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred ccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 9855444444333333678888876532211 22567888865422 2223333333333333321 111110 01
Q ss_pred --CEEEEEECccCC---------------------------------------C-----CCeeEEEecC--------CCC
Q 020021 182 --GYIRMFDARKYE---------------------------------------K-----GPFDIFSVGG--------DIS 207 (332)
Q Consensus 182 --~~i~vwd~~~~~---------------------------------------~-----~~~~~~~~~~--------~~~ 207 (332)
+.+|+|...... . ..+..+...+ ..+
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 244444322000 0 0000111111 136
Q ss_pred CceeEEEcCCCCEEEE--EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC---CCcEEEEECCC
Q 020021 208 DANVVKFSNDGRLMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVYAWSVRS 282 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~---Dg~i~vWd~~~ 282 (332)
+|.+++++|+|+.+++ |-+=-.+.|+|++ +.++..+- .++-.++-|+|.|++|+-+|- -|.|-|||+.+
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 8999999999987665 4566789999976 56655442 344456889999999999876 46999999999
Q ss_pred CceEEEecCCCCCCceEEeCCCeeEEEeccc--------eEEEecccccccccc
Q 020021 283 GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--------ELSFWIPDLSKLGAY 328 (332)
Q Consensus 283 ~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~--------d~~~w~~~~~~~~~~ 328 (332)
.+++..+...+ -+...|+|||.+|.|+.- .++||......|.+.
T Consensus 346 ~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 346 RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 88888776544 356889999999988642 289998887776553
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=8.7e-11 Score=101.05 Aligned_cols=187 Identities=13% Similarity=0.255 Sum_probs=129.9
Q ss_pred cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec---CceeEEEcC-CCeEEEEEeCCEEEEEECccC------
Q 020021 123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRPAAAYDD-QGLVFAVAFGGYIRMFDARKY------ 192 (332)
Q Consensus 123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~------ 192 (332)
.+..++|+++-..|+.+..|-+|+++|-+. .+...++.. ...+.++.| ....++++-.+.|-+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 467788998777899999999999999765 333333322 233455655 345777777788999964321
Q ss_pred ----CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEE
Q 020021 193 ----EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI 267 (332)
Q Consensus 193 ----~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~ 267 (332)
...+..+....+| ..|+++.+.+||..+++++. +..|.|||..++..+.... -..+.+.-+.|||||.+|+
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc---cCCCceeeEEEcCCCCEEE
Confidence 1223334455555 57899999999999998874 5789999999887653321 1234455689999999999
Q ss_pred EEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE-Eeccce
Q 020021 268 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF-VTGSSE 314 (332)
Q Consensus 268 sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~t~~~d 314 (332)
++.-|+..++|+.....--..+..-++.|..-+|+|+|+.| .+.+..
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence 99999999999654332223333345588889999999754 344443
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2e-09 Score=100.80 Aligned_cols=205 Identities=10% Similarity=0.092 Sum_probs=123.2
Q ss_pred cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeE
Q 020021 57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCF 136 (332)
Q Consensus 57 tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l 136 (332)
.+.++|.+..+. +.+......+....|+|+++.+++.+...-...+.++|+.+++... +...........|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 666778765443 3444455567778999999999887643223468889998876432 22222333467899999977
Q ss_pred EE-eeCCCc--EEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEE
Q 020021 137 IS-GSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVK 213 (332)
Q Consensus 137 ~s-~s~Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~ 213 (332)
+. .+.++. |.+||+.+++..... .+.......+
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt--------------------------------------------~~~~~~~~p~ 312 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRIT--------------------------------------------RHRAIDTEPS 312 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECc--------------------------------------------cCCCCccceE
Confidence 64 566665 555555443321000 0011224468
Q ss_pred EcCCCCEEEEEcC-C--CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-C--cEEEEECCCCceEE
Q 020021 214 FSNDGRLMLLTTM-E--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVYAWSVRSGKEVA 287 (332)
Q Consensus 214 ~s~dg~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g--~i~vWd~~~~~~~~ 287 (332)
|||||+.++..+. + ..|+++|+.+++... +... .......+|+|||++|+..+.+ + .|.++|+.+++. .
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~---g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~ 387 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE---GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-Q 387 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC---CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-E
Confidence 9999998876553 3 357777887776432 2111 1122346899999999877553 3 456678877654 3
Q ss_pred EecCCCCCCceEEeCCCeeEEEeccc
Q 020021 288 SWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 288 ~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.+... ......+|+|||++++..+.
T Consensus 388 ~lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 388 VLTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EccCC-CCCCCceECCCCCEEEEEEe
Confidence 33322 12234589999988766543
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.8e-09 Score=99.10 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=133.8
Q ss_pred eccCCCcEEEEEECCCCCEE---EEEeCCC--cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC-C-CCce
Q 020021 30 FRDYNGRISSMDFHKSSSYL---VTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-G-WDES 102 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l---~tgs~D~--tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-g-~d~~ 102 (332)
|......+.+-.|||||+.+ .+...++ .|.+.++.+++..+. ...........|+|+++.+++.+.. | .+-.
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 44445566677999999752 2444444 456668877754332 2222233456899999998887632 2 2323
Q ss_pred eEEEEccCC---ceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021 103 LRLLSLHDN---KYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 103 v~v~d~~~~---~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (332)
+..|++..+ +......++........|+|||+.|+..+ .+|..++|.+.....
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~----------------------- 315 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE----------------------- 315 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc-----------------------
Confidence 444676642 33333333334456789999999877665 466666664321000
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---CeEEEEEccCCeEeEEeeecCCCCCcce
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTL 255 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 255 (332)
++..+. +......+....+||||+.++....+ ..|++||+.+++...... ....+.
T Consensus 316 --g~~~~~---------------lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~ 374 (428)
T PRK01029 316 --GQSPRL---------------LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKE 374 (428)
T ss_pred --ccceEE---------------eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCcc
Confidence 000000 00001123456899999988876543 479999998886543221 112344
Q ss_pred EEEECCCCCEEEEEcC---CCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021 256 EASFSPEGMFVISGSG---DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304 (332)
Q Consensus 256 ~v~~spdg~~l~sgs~---Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~ 304 (332)
...|+|||++|+..+. ...|++||+..++. ..+....+.+...+|+|-
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceecCC
Confidence 5789999998875433 34799999977654 334344455667888874
No 246
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.29 E-value=3.2e-10 Score=110.80 Aligned_cols=215 Identities=18% Similarity=0.227 Sum_probs=139.5
Q ss_pred CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCc-------eEEEEEEecC--ceeEEEcCCCeEEE-EE
Q 020021 111 NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE-------KCQGLLRVQG--RPAAAYDDQGLVFA-VA 179 (332)
Q Consensus 111 ~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~-~~ 179 (332)
|..+..+..|...|..++.++ ++.+|+|||.||+||+||.+.- ++.-++...+ .........+..++ ++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 455677888999999888876 4589999999999999997532 1122222111 11223334444444 45
Q ss_pred eCCEEEEEECccCCCCCeeEEEec----CCCCCc-eeEEEc-CCCC-EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVG----GDISDA-NVVKFS-NDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN 252 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~----~~~~~v-~~v~~s-~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 252 (332)
.||.|++.++...+.......... .....+ ..-+|. .+++ .++.++..+.|..||.++....-+..... ..+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHG 1196 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-ccc
Confidence 689999999876432222111110 001111 222222 2344 78888999999999998766554444332 346
Q ss_pred cceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe-cCCCCCCceEEeCCC---eeEEEeccc----eEEEecccccc
Q 020021 253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW-MSFDTEPPVIKWTPG---SLMFVTGSS----ELSFWIPDLSK 324 (332)
Q Consensus 253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~---~~~l~t~~~----d~~~w~~~~~~ 324 (332)
.+++++.+|-++++++|+.-|.+-+||++-+..+.++ .++..++..|..+|- ....++++. ++.+|....+
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g- 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG- 1275 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-
Confidence 7889999999999999999999999999988888775 344477888887663 244555443 4999987663
Q ss_pred ccc
Q 020021 325 LGA 327 (332)
Q Consensus 325 ~~~ 327 (332)
+++
T Consensus 1276 ~~~ 1278 (1431)
T KOG1240|consen 1276 LRQ 1278 (1431)
T ss_pred cce
Confidence 443
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=4.5e-10 Score=95.67 Aligned_cols=279 Identities=12% Similarity=0.130 Sum_probs=162.9
Q ss_pred eEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-------
Q 020021 28 MSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW------- 99 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~------- 99 (332)
-....-++.+.+++||||| .+|.+...|-.|.+|.+.+.++.. ++.....+..++|++++++.+..+....
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 3345566889999999999 566788899999999998876643 2233445678899999998776643211
Q ss_pred --------------------------CceeEEEEccCCceEEEeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021 100 --------------------------DESLRLLSLHDNKYLRYFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 100 --------------------------d~~v~v~d~~~~~~~~~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~ 152 (332)
++.+-|||---.- +.+.-|. -.+..+.|+|.+.+++-|+.|+.+|+-+--+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh--eeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 2345556521111 1111122 3577788888888999999999888865433
Q ss_pred ceEEEEEE-ecC--cee--EEE----cCCCeEE-EEEe---CCEEEEEECccC--CC----CCeeEEE----ecCCCCCc
Q 020021 153 EKCQGLLR-VQG--RPA--AAY----DDQGLVF-AVAF---GGYIRMFDARKY--EK----GPFDIFS----VGGDISDA 209 (332)
Q Consensus 153 ~~~~~~~~-~~~--~~~--~~~----~~~~~~~-~~~~---~~~i~vwd~~~~--~~----~~~~~~~----~~~~~~~v 209 (332)
=+....+- ... .+. ..+ ..-.... ..++ +-.-.+|..... +. ..++... .......+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 33322220 000 000 000 0000000 0000 001111111100 00 0000000 00112356
Q ss_pred eeEEEcCCCCEEEEEcCC--CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021 210 NVVKFSNDGRLMLLTTME--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA 287 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~ 287 (332)
.-++||+|.+++++..+. +.+.+||++.-++-..+ ....++....|.|....|+.+.....++.|...-...+.
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL----iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh----hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe
Confidence 778999999999987665 57999998765543333 234567778899998888877767789999876544443
Q ss_pred EecCCCCCCceEEeCCCeeEEEeccce
Q 020021 288 SWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 288 ~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
.. .-.=.|..+.|.-+|..++-.+.|
T Consensus 398 vP-~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 398 VP-KKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred cC-CCCceeeeEEecCCCcEEEEEcCC
Confidence 32 222357889999999888888887
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.1e-09 Score=99.42 Aligned_cols=236 Identities=17% Similarity=0.235 Sum_probs=157.7
Q ss_pred ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccc-cEEE-EEecCCCCeEEEeeCCCcEEEEeCCCceE
Q 020021 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHD-RVVS-LSLCSSKDCFISGSLDRTVLLWDQRAEKC 155 (332)
Q Consensus 78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~-~V~~-v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~ 155 (332)
..+.+.++|+|.++++.. -+...|++||+.+-. -.+..|.+ .+.. .-++.|-..++--..|++|.+-..- +.
T Consensus 53 ast~ik~s~DGqY~lAtG--~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~- 126 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATG--TYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GR- 126 (703)
T ss_pred ccceeEecCCCcEEEEec--ccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ce-
Confidence 346788999999987664 367899999997643 23445543 3443 3445565666666778888875422 21
Q ss_pred EEEEEec--CceeEEEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021 156 QGLLRVQ--GRPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (332)
Q Consensus 156 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i 232 (332)
.-.++.+ +. ...++ +..-++.++.+..|.-+++... .+. .......+.+++|..++-..++++|+.+|.|..
T Consensus 127 hy~~RIP~~GR-Dm~y~~~scDly~~gsg~evYRlNLEqG---rfL-~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 127 HYRTRIPKFGR-DMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFL-NPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred eeeeecCcCCc-cccccCCCccEEEeecCcceEEEEcccc---ccc-cccccccccceeeeecCccceEEecccCceEEE
Confidence 1111221 11 12333 3344666777778888887643 221 122223467899999999999999999999999
Q ss_pred EEccCCeEeEEeeecCC---C-----CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC--CCceEEeC
Q 020021 233 LDSFRGTLLSTYNVKPV---S-----RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT--EPPVIKWT 302 (332)
Q Consensus 233 ~d~~~~~~~~~~~~~~~---~-----~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~--~v~~l~~s 302 (332)
||.+......++..... + ...++++.|+-||-.++.|..+|.+.|+|+.+.+++.. ..|.. +|..+.|.
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQ 280 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeeccc
Confidence 99988766665543221 1 23478899999999999999999999999998776543 44543 56778887
Q ss_pred CC--eeEEEeccce-EEEeccccccc
Q 020021 303 PG--SLMFVTGSSE-LSFWIPDLSKL 325 (332)
Q Consensus 303 p~--~~~l~t~~~d-~~~w~~~~~~~ 325 (332)
+. ...++|...- ++||+....+.
T Consensus 281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred ccCCCceEEecchHHhhhcccccCCc
Confidence 75 4556665544 99998866554
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=9.8e-09 Score=95.52 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=122.7
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE--EEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCC
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSK 133 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~ 133 (332)
+.|.+.|.+.++.. .+.........=.|+|+++. +++.+...-...|.+.++.+++... +....+......|+|||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 35666676654433 34333333445589999986 3333332224578888998776433 33334445567999999
Q ss_pred CeEEEeeC-CC----cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCC
Q 020021 134 DCFISGSL-DR----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISD 208 (332)
Q Consensus 134 ~~l~s~s~-Dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~ 208 (332)
+.|+..+. +| .+..|++..+.. ....++.+ +....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~-------------------------g~~~~lt~---------------~~~~~ 282 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAI-------------------------GKPRRLLN---------------EAFGT 282 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCC-------------------------CcceEeec---------------CCCCC
Confidence 98876543 23 122233322100 00000000 01112
Q ss_pred ceeEEEcCCCCEEEEEc-CCCe--EEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECC
Q 020021 209 ANVVKFSNDGRLMLLTT-MEGH--IHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVR 281 (332)
Q Consensus 209 v~~v~~s~dg~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~ 281 (332)
....+|||||+.|+..+ .+|. |+++++.. +.....+. .....+....|||||++|+..+.+ ..|++||+.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 23568999999877655 4564 44444432 22222222 112334567899999999876543 369999998
Q ss_pred CCceEEEecCCCCCCceEEeCCCeeEEEecc-----ceEEEecccccc
Q 020021 282 SGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-----SELSFWIPDLSK 324 (332)
Q Consensus 282 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~-----~d~~~w~~~~~~ 324 (332)
+++. ..+......+....|+|||++++... .++.+++.+..+
T Consensus 360 ~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 360 TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8765 33443334567799999998776432 235555554433
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2e-09 Score=98.13 Aligned_cols=189 Identities=17% Similarity=0.271 Sum_probs=138.2
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc---cceeEEEEc-------------------cCCC-EEEEecCCCC
Q 020021 43 HKSSSYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFT-------------------SHPT-TVIYSSKNGW 99 (332)
Q Consensus 43 s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~---~~v~~~~~~-------------------~~~~-~~~~~s~~g~ 99 (332)
+|...|+|....||.+||||+..++..+.+.... .......|. ..++ .++.+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~--- 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP--- 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC---
Confidence 4556899999999999999999888766554221 111111111 1112 2333432
Q ss_pred CceeEEEEccCCceEEEee--cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021 100 DESLRLLSLHDNKYLRYFK--GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 177 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~--~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (332)
.+.|.+|++..++....+. +|-+.|+++.++.+-..|.|++.|+.+.+|+....+.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~---------------------- 136 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI---------------------- 136 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----------------------
Confidence 4679999999988776665 6999999999998889999999999999999865532
Q ss_pred EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
+++|... +..+.+++++|||..+++++ +.|.+||+.+.+.+..|. +|..++..+
T Consensus 137 ------~~~~~~~---------------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~ 190 (541)
T KOG4547|consen 137 ------IRIWKEQ---------------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTL 190 (541)
T ss_pred ------eeeeccC---------------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEE
Confidence 3444432 23467789999999888765 589999999999998887 677888888
Q ss_pred EECCC-----CCEEEEE-cCCCcEEEEECCC
Q 020021 258 SFSPE-----GMFVISG-SGDGSVYAWSVRS 282 (332)
Q Consensus 258 ~~spd-----g~~l~sg-s~Dg~i~vWd~~~ 282 (332)
+|..+ |.|+++. ..+.-|.+|-+..
T Consensus 191 ~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 191 SFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEeccccccceeeeccccccceeEEEEEc
Confidence 88776 6666555 6677889997754
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=3.6e-10 Score=108.83 Aligned_cols=189 Identities=16% Similarity=0.201 Sum_probs=141.1
Q ss_pred cEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce------eEEEcCCCeEEEEE-eCCEEEEEECccCCCC
Q 020021 123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP------AAAYDDQGLVFAVA-FGGYIRMFDARKYEKG 195 (332)
Q Consensus 123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~i~vwd~~~~~~~ 195 (332)
.|....+.-..+.++.+..+..+-+||...+.....+....+. ....+....+++++ .-+.|.+|+....+ .
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-K 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-C
Confidence 3444555667788999999999999998766655444333221 12223444555444 46899999976322 2
Q ss_pred CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcE
Q 020021 196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 275 (332)
Q Consensus 196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i 275 (332)
+. .+.||...+.++.+|.||+++++.++|..+++|++.+++.+. -....|...++.+.|.|+ +++|+++|-++
T Consensus 168 p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 168 PI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred cc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--eeEEeccceEE
Confidence 22 355788889999999999999999999999999999887664 122357888999999998 99999999999
Q ss_pred EEEECCCCceEEEecCCC-CCCceEEeCCCeeEEEeccce--EEEecc
Q 020021 276 YAWSVRSGKEVASWMSFD-TEPPVIKWTPGSLMFVTGSSE--LSFWIP 320 (332)
Q Consensus 276 ~vWd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~t~~~d--~~~w~~ 320 (332)
++|+. +++.+..+..|. ..++.++..++..+.+|++.| +++|+.
T Consensus 241 rvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 241 RVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 99976 456666676665 568999999999999999988 666654
No 252
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=4.5e-08 Score=100.18 Aligned_cols=253 Identities=12% Similarity=0.191 Sum_probs=157.2
Q ss_pred EEEECCC-CCEEEEEeCCCcEEEEEcCCCeeeEEeee-cc-------------cceeEEEEccCCCEEEEecCCCCCcee
Q 020021 39 SMDFHKS-SSYLVTASDDESIRLYDVTAATCLKTINS-KK-------------YGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 39 ~i~~s~d-g~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~-------------~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
.++++++ +.++++-+..+.|++||... ..+..+.. .. .....+++.+++..++++.. ..+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt--~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT--ENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC--CCceE
Confidence 6788875 56778888889999999864 44433332 11 12456788887776666532 35679
Q ss_pred EEEEccCCceEEEeecc-----------------cccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce
Q 020021 104 RLLSLHDNKYLRYFKGH-----------------HDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 165 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h-----------------~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~ 165 (332)
+++|..++. +.++.+- ...-..++++| ++..+++.+.++.|++||..++... .+..
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G---- 722 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG---- 722 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec----
Confidence 999987754 3333210 11235789998 5667788888899999998665431 1110
Q ss_pred eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC-EEEEEcCCCeEEEEEccCCeEeEEe
Q 020021 166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTY 244 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (332)
++.....+ +... ..........++++|+|. ++++.+.++.|++||+.++......
T Consensus 723 ---------------~G~~~~~~------g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 723 ---------------DGYERNLN------GSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred ---------------CCccccCC------CCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 11000000 0000 000112346789999997 6667778899999998876532110
Q ss_pred eecC------------------CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC--------------
Q 020021 245 NVKP------------------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-------------- 292 (332)
Q Consensus 245 ~~~~------------------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-------------- 292 (332)
...+ ........++++|+|+.+++-+.++.|++||..++... ++...
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccc
Confidence 0000 00112347899999999999999999999999876543 22211
Q ss_pred CCCCceEEeCCCeeEEEeccce--EEEeccccccc
Q 020021 293 DTEPPVIKWTPGSLMFVTGSSE--LSFWIPDLSKL 325 (332)
Q Consensus 293 ~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~~~~ 325 (332)
-..+..|+++|+|+++++.+.+ +++|+.+..++
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1246779999999988887655 77887765443
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.8e-09 Score=93.84 Aligned_cols=237 Identities=12% Similarity=0.168 Sum_probs=154.4
Q ss_pred ceeEEEEccCCCE-EEEecCCCCCceeEEEEccCCceEE------EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeC
Q 020021 78 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLR------YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQ 150 (332)
Q Consensus 78 ~v~~~~~~~~~~~-~~~~s~~g~d~~v~v~d~~~~~~~~------~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~ 150 (332)
.+..++|..+++. ++.+.+. +..+...+++...... ....-+++|.++... ...|++|-.+|.+.+|..
T Consensus 57 ris~l~~~~d~~tevl~~r~~--~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSA--DDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhheeecCCceeEeecccc--CcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4555666655543 3333211 3344444544433222 233455666666543 357899999999999998
Q ss_pred CCce-----EEEEEEecCceeEEEcC-CCeEEE-EEeC--CEEEEEECccCCCCCeeEEEecCC------CCCceeEEEc
Q 020021 151 RAEK-----CQGLLRVQGRPAAAYDD-QGLVFA-VAFG--GYIRMFDARKYEKGPFDIFSVGGD------ISDANVVKFS 215 (332)
Q Consensus 151 ~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~i~vwd~~~~~~~~~~~~~~~~~------~~~v~~v~~s 215 (332)
+.+. .......++.....-.+ ...+++ ++.. +.+++||+.... ..+....+..+ +.-++.+.|-
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccceeeeeeccceec
Confidence 7332 22222222222222222 223444 5555 689999987541 11110000000 1234667888
Q ss_pred CC--CCEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEE-ecC
Q 020021 216 ND--GRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVAS-WMS 291 (332)
Q Consensus 216 ~d--g~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~ 291 (332)
++ ...+++++.-+.+++||.+.+.. +..+. ...+++.++...|+|+++++|..-|.+..||++.++.+.. +.+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 87 78999999999999999876543 33333 3457788899999999999999999999999999888766 788
Q ss_pred CCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021 292 FDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 292 ~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~ 322 (332)
..+.+..|--+|+...+++++-| +++++.+.
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 89999999999999999999998 77777766
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.6e-09 Score=98.76 Aligned_cols=184 Identities=10% Similarity=0.158 Sum_probs=134.1
Q ss_pred CCCCeEEEeeCCCcEEEEeCCCceEEEEEEec----Cce---eEEE------------------cCCCeEEE-EEeCCEE
Q 020021 131 SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRP---AAAY------------------DDQGLVFA-VAFGGYI 184 (332)
Q Consensus 131 ~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~----~~~---~~~~------------------~~~~~~~~-~~~~~~i 184 (332)
|...+||....||.+||||...++....+... +.. .+.. ..+...+. +...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44578999999999999999888765555321 100 0000 11223333 3346888
Q ss_pred EEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCC
Q 020021 185 RMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 264 (332)
Q Consensus 185 ~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~ 264 (332)
-+|++...+. .-.+.-+.|...++++..+.+-..|-+++.|+++-.|+...+..+..+.. ....+..++.+|||.
T Consensus 83 ~~ys~~~g~i--t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEI--TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCeE--EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCC
Confidence 8888754321 11234456778899988898999999999999999999988888777653 345566789999999
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC-----eeEEEec-cc--eEEEeccc
Q 020021 265 FVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG-----SLMFVTG-SS--ELSFWIPD 321 (332)
Q Consensus 265 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~t~-~~--d~~~w~~~ 321 (332)
.+++|| +.|++||+++++.+.+|.+|.++|.+++|-.+ |.++.++ .. ...+|..+
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999997 67999999999999999999999999999776 5555543 33 37777554
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=5.4e-10 Score=99.56 Aligned_cols=207 Identities=9% Similarity=0.116 Sum_probs=139.7
Q ss_pred EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-e-----eEEEcCCCeEEEEEeCCEEEEE
Q 020021 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-P-----AAAYDDQGLVFAVAFGGYIRMF 187 (332)
Q Consensus 114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~i~vw 187 (332)
...|..|.+.|..|.|...|..++|+|.|..|.+||+..++....+..... + ..-+..+..++.++.||.+++-
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 456889999999999999999999999999999999877665443322111 0 1112234456777789999887
Q ss_pred ECccCCCCCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC---cceEEEECCCC
Q 020021 188 DARKYEKGPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN---STLEASFSPEG 263 (332)
Q Consensus 188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~v~~spdg 263 (332)
.+..... ......++.|...+..++.-|+. ..+.+++.|+.+.-+|++.+..-..+.......+ ....++..|-+
T Consensus 215 ~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 6543211 11133455666788888888876 4578899999999999987765444432222223 33467888866
Q ss_pred C-EEEEEcCCCcEEEEECCCCce------EEEec------CCCCCCceEEeCCCe-eEEEeccc-eEEEeccc
Q 020021 264 M-FVISGSGDGSVYAWSVRSGKE------VASWM------SFDTEPPVIKWTPGS-LMFVTGSS-ELSFWIPD 321 (332)
Q Consensus 264 ~-~l~sgs~Dg~i~vWd~~~~~~------~~~~~------~~~~~v~~l~~sp~~-~~l~t~~~-d~~~w~~~ 321 (332)
. ++|+|+.|-.++++|...-.. +..+. ...-.|++++|+.++ .+|++-.. ++.++..+
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 5 889999999999999864221 22221 234568999999654 56666443 47777543
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1.1e-06 Score=76.23 Aligned_cols=267 Identities=13% Similarity=0.178 Sum_probs=167.8
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEEcCC--CeeeEE--eeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 31 RDYNGRISSMDFHKSSSYLVTASDD---ESIRLYDVTA--ATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 31 ~~h~~~I~~i~~s~dg~~l~tgs~D---~tv~iwd~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
..+.+.++=|.|+|++++|.++..+ +.|-.|.++. |+.... ......+-.-+++.++++.++.+.-. -+.|
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v 113 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSV 113 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc--CceE
Confidence 4456678889999999988877655 7888887764 443221 11112223568899999988887642 4789
Q ss_pred EEEEccC-CceEE--Eeeccccc----------EEEEEecCCCCeEEEee--CCCcEEEEeCCCceEEEEEEec-----C
Q 020021 104 RLLSLHD-NKYLR--YFKGHHDR----------VVSLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQ-----G 163 (332)
Q Consensus 104 ~v~d~~~-~~~~~--~~~~h~~~----------V~~v~~~~~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~-----~ 163 (332)
.++-++. |.... .+..|.+. +-...+.|++++|++.. .| .|.++++..++....-... +
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCC
Confidence 9998865 33211 12234444 77888999999998885 44 4688888876654322211 1
Q ss_pred ceeEEEcCCCeEEEEEe--CCEEEEEECccCCCCCeeEEEe----c---CCCCCceeEEEcCCCCEEEEEcC-CCeEEEE
Q 020021 164 RPAAAYDDQGLVFAVAF--GGYIRMFDARKYEKGPFDIFSV----G---GDISDANVVKFSNDGRLMLLTTM-EGHIHVL 233 (332)
Q Consensus 164 ~~~~~~~~~~~~~~~~~--~~~i~vwd~~~~~~~~~~~~~~----~---~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~ 233 (332)
.--.+|++++.++.+.. +++|.+|..... .+.+...+. . .......++.++|||++|.++.. ...|.+|
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 11357888888776664 699999987653 222221110 0 01234577899999999877642 2366666
Q ss_pred Ecc--CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-cEEEEECC--CCceEEEec-CCCCCCceEEeC
Q 020021 234 DSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVR--SGKEVASWM-SFDTEPPVIKWT 302 (332)
Q Consensus 234 d~~--~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-~i~vWd~~--~~~~~~~~~-~~~~~v~~l~~s 302 (332)
.+. +++ +......+.+........|+|+|++|+.+..|+ +|.++.+. +|+.-.... .....+.||.|.
T Consensus 272 ~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 272 SVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 553 343 333333344445566788999999999998776 78888774 444322222 233456777775
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=8.9e-10 Score=111.28 Aligned_cols=200 Identities=17% Similarity=0.300 Sum_probs=150.2
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 30 FRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 30 l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
.+.|-..|.++.=+|...+.+||+.|+.+++|.-..+..+..+.. .+..|+.+.|+..|+.+-.+. | |+.+.+|..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d--~-dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD--G-DGDLSLWQA 2280 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec--c-CCceeeccc
Confidence 444556677777788889999999999999999887777766643 336788889999988776654 2 888999988
Q ss_pred cCCceEEEeecccccEEEEEecCCCCeEEEee---CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEE
Q 020021 109 HDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIR 185 (332)
Q Consensus 109 ~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s---~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 185 (332)
. .++....+.|........|-. ..+++++ .++.+.+||..-......+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------------------------- 2331 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------------------------- 2331 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee--------------------------
Confidence 6 456667788988888888875 5567765 3678888884221110000
Q ss_pred EEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCE
Q 020021 186 MFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF 265 (332)
Q Consensus 186 vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~ 265 (332)
. ..|...++.+++.|..+++++|+.+|.|.+||++..++++++.. +. ...+
T Consensus 2332 ---------------~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------~~-~~~~ 2382 (2439)
T KOG1064|consen 2332 ---------------H-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LD-TREY 2382 (2439)
T ss_pred ---------------e-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------hh-hhhe
Confidence 0 12445678899999999999999999999999998887765531 33 5678
Q ss_pred EEEEcCCCcEEEEECCCCceEEEec
Q 020021 266 VISGSGDGSVYAWSVRSGKEVASWM 290 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~~~~~~~~~ 290 (332)
+.+|+..|.|+||++..-..++++.
T Consensus 2383 f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eeccCcccceEEEEccccchhhcCc
Confidence 9999999999999998876666653
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=3.4e-09 Score=90.85 Aligned_cols=249 Identities=12% Similarity=0.215 Sum_probs=159.4
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeeeEEeee-cccceeEEEEccCCCEEEEecCCCCC
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
...+...++||.+.|+....-|-.+-+.+.+.|.++|||-- +.++--..+.. -+.+++...+.+....++.+-. +
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---n 89 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---N 89 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---c
Confidence 34556678899999999888888889999999999999943 22221111111 1234555556555555555543 2
Q ss_pred ceeEEE----EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe-CCCceEEEEEEecCceeEEEcCCCeE
Q 020021 101 ESLRLL----SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLLRVQGRPAAAYDDQGLV 175 (332)
Q Consensus 101 ~~v~v~----d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd-~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (332)
+++.-+ |.+....++....|..+|..+-|+-....+++.+.|+.+. |. .+.++.+.-......+. +....
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t----~~~~d 164 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPAS----ALQFD 164 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCC----CCcee
Confidence 233333 3344456677788999999999999899999999998854 54 34443333222211110 11111
Q ss_pred EEEE----eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC
Q 020021 176 FAVA----FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR 251 (332)
Q Consensus 176 ~~~~----~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 251 (332)
+..+ ..+.|.+-.+.....+ .+....++...+.+.++.|....+.++..|..+.+||+-..+-+ .++.. .|.
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~-gh~ 240 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQ-GHN 240 (404)
T ss_pred eEEEEecccccceEEEEEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeec-cch
Confidence 1122 2345544433222112 23455577788999999999999999999999999998543322 22221 355
Q ss_pred CcceEEEECCCCCEEEEEcCCCcEEEEECCCC
Q 020021 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSG 283 (332)
Q Consensus 252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~ 283 (332)
..+..+..-+--+.+.++++||-|-+||+...
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 66666666677789999999999999999653
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=4.1e-10 Score=101.85 Aligned_cols=210 Identities=18% Similarity=0.325 Sum_probs=145.3
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcC-------CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCC
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVT-------AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
..|.||+..|..|+--.+.+.+++++.|+||++|.+. +..|..++..|..+|..+.|-.+-+.++++ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----c
Confidence 4588999999998876677889999999999999875 345888999999999999998888777754 6
Q ss_pred ceeEEEEccCCceEEEee-----cccccEEEEEecCCCCeEEEe-eCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCe
Q 020021 101 ESLRLLSLHDNKYLRYFK-----GHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 174 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~-----~h~~~V~~v~~~~~~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (332)
+-+.+||.-.+..+..+. +.-..|.++. +-+...++.+ +...|+++.|.+.......++.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV------------- 869 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKV------------- 869 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEe-------------
Confidence 779999975555433111 1122333332 1133344444 6788899988776543322221
Q ss_pred EEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcc
Q 020021 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST 254 (332)
Q Consensus 175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 254 (332)
-+ ..+...-+++++..+.|..++++-.+|+|.+.|.++|+++..++- .... .
T Consensus 870 ------------cn-------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp--mecd-l 921 (1034)
T KOG4190|consen 870 ------------CN-------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP--MECD-L 921 (1034)
T ss_pred ------------cc-------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc--ccch-h
Confidence 10 011223467889999999999999999999999999998865541 1100 0
Q ss_pred eEEEECCCCCEEEEEcCCCcEEE-EECCCCce
Q 020021 255 LEASFSPEGMFVISGSGDGSVYA-WSVRSGKE 285 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~v-Wd~~~~~~ 285 (332)
.. .-.|..+.|+....|.++-| |....+..
T Consensus 922 lq-laapsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 922 LQ-LAAPSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred hh-hcCchhHHHHhhcccceeEeeehhcCCee
Confidence 01 12477888888888999999 97766544
No 260
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=3.2e-07 Score=84.28 Aligned_cols=230 Identities=15% Similarity=0.137 Sum_probs=136.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~ 125 (332)
+..++.++.|+.+..+|..+|+.+............... .+..++.... ++.+..+|.++|+.+..+......+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCcee
Confidence 456666777788888887777776544322111000011 2334554432 67899999999988776654332211
Q ss_pred -----EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc------------eeEEEcCCCeEEEEEeCCEEEEEE
Q 020021 126 -----SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR------------PAAAYDDQGLVFAVAFGGYIRMFD 188 (332)
Q Consensus 126 -----~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~vwd 188 (332)
...+ .+..++.+..++.+..+|.++++..-....... .....-.++.++..+.++.+..+|
T Consensus 180 ~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 180 LRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred ecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 1111 234677888889999999988876543321100 000011245677777789999999
Q ss_pred CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (332)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s 268 (332)
..+.+. .+.... .... ....++..+..++.+|.++.+|..+|+.+-..... ......... ..+.+|+.
T Consensus 258 ~~tG~~----~W~~~~--~~~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~--i~g~~l~~ 325 (377)
T TIGR03300 258 LRSGRV----LWKRDA--SSYQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTAPA--VVGGYLVV 325 (377)
T ss_pred CCCCcE----EEeecc--CCcc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCccccCE--EECCEEEE
Confidence 865421 122111 1111 12234566777789999999999999876443211 111111111 14678899
Q ss_pred EcCCCcEEEEECCCCceEEEecCCCC
Q 020021 269 GSGDGSVYAWSVRSGKEVASWMSFDT 294 (332)
Q Consensus 269 gs~Dg~i~vWd~~~~~~~~~~~~~~~ 294 (332)
++.||.++++|..+++.+..+..+..
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 99999999999999999887765553
No 261
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.2e-07 Score=86.05 Aligned_cols=194 Identities=7% Similarity=0.003 Sum_probs=116.8
Q ss_pred cEEEEEECCCCCE-EEEEeCC---CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021 36 RISSMDFHKSSSY-LVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (332)
Q Consensus 36 ~I~~i~~s~dg~~-l~tgs~D---~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~ 111 (332)
.+..-.|+|||+. ++-.+.+ ..|.++|+.+++...... .........|+|+++.++......-+..+.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778899999984 6654544 457888988886644332 3333445679999998877654333667888898887
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeC-CC--cEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD 188 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd 188 (332)
+.. .+..+........|+|||+.++-.+. .+ .|.+.|+.++... ++
T Consensus 268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----------------------------rl-- 316 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----------------------------QV-- 316 (419)
T ss_pred cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE----------------------------eC--
Confidence 643 34434433345579999987765553 22 2333333322210 00
Q ss_pred CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC---------CeEEEEEccCCeEeEEeeecCCCCCcceEEEE
Q 020021 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 259 (332)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (332)
...+. ....+||||+.++..... ..|.+.|+.++... .+.. . .......|
T Consensus 317 ------------t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~--~--~~~~~p~~ 375 (419)
T PRK04043 317 ------------VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA--N--GVNQFPRF 375 (419)
T ss_pred ------------ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC--C--CCcCCeEE
Confidence 00011 113789999988776543 37888898877643 2221 1 12224689
Q ss_pred CCCCCEEEEEcCCC---cEEEEECCC
Q 020021 260 SPEGMFVISGSGDG---SVYAWSVRS 282 (332)
Q Consensus 260 spdg~~l~sgs~Dg---~i~vWd~~~ 282 (332)
+|||++|+-.+.++ .+.+.++..
T Consensus 376 SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 376 SSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCCEEEEEEccCCcEEEEEEecCC
Confidence 99999887765433 466667643
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=5.1e-10 Score=101.26 Aligned_cols=200 Identities=13% Similarity=0.222 Sum_probs=134.6
Q ss_pred EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC-------CceEEEeecccccEEEEEecCCCCeEEEeeCC
Q 020021 70 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-------NKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD 142 (332)
Q Consensus 70 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~-------~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D 142 (332)
..+.+|+..|..+..-.+.+.++++++ |.+|++|.++. ..+..+++.|+.+|..+.|-.+.+.++|+ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASk---DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASK---DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccC---CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 456667666666555555566676665 89999999853 34788999999999999999998888765 9
Q ss_pred CcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE
Q 020021 143 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222 (332)
Q Consensus 143 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 222 (332)
|-|.+||.--++..... .|+-+.... ..+ .+--+-|..++.
T Consensus 804 ~giHlWDPFigr~Laq~--------------------------~dapk~~a~------------~~i-kcl~nv~~~ili 844 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQM--------------------------EDAPKEGAG------------GNI-KCLENVDRHILI 844 (1034)
T ss_pred CcceeecccccchhHhh--------------------------hcCcccCCC------------cee-EecccCcchhee
Confidence 99999996433322100 000000000 000 011111333333
Q ss_pred -EEcCCCeEEEEEccCCeEeEEeeec--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceE
Q 020021 223 -LTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI 299 (332)
Q Consensus 223 -~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l 299 (332)
.++.+.+|+++|.+.++...+++.. +.++..+.+++..|.|+.+|.|=..|+|-+.|.++|+.+.++.........+
T Consensus 845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql 924 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL 924 (1034)
T ss_pred eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh
Confidence 3478889999999999888777654 4455566788999999999999999999999999999888776655555445
Q ss_pred EeCCCeeEEEeccce
Q 020021 300 KWTPGSLMFVTGSSE 314 (332)
Q Consensus 300 ~~sp~~~~l~t~~~d 314 (332)
+ .|..+.|+....|
T Consensus 925 a-apsdq~L~~sald 938 (1034)
T KOG4190|consen 925 A-APSDQALAQSALD 938 (1034)
T ss_pred c-CchhHHHHhhccc
Confidence 4 4555555444333
No 263
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.03 E-value=8e-10 Score=66.15 Aligned_cols=38 Identities=26% Similarity=0.535 Sum_probs=36.2
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd 62 (332)
++.++|.+|+++|++|+|+|++++|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46789999999999999999999999999999999997
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=4e-06 Score=72.91 Aligned_cols=270 Identities=13% Similarity=0.192 Sum_probs=166.9
Q ss_pred CCcEEEEEcCCC--eee-EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC--CceEE----EeecccccEE
Q 020021 55 DESIRLYDVTAA--TCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYLR----YFKGHHDRVV 125 (332)
Q Consensus 55 D~tv~iwd~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~--~~~~~----~~~~h~~~V~ 125 (332)
+.-|.+|++.+. +.- ..+..+...++-++++++.+.++.+...|-++.|-.|.+.. |.... .+.|+ +-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCe
Confidence 577999988732 221 11223344567789999998888877666567777777664 43211 11222 227
Q ss_pred EEEecCCCCeEEEeeC-CCcEEEEeCCC-ceEEEEE---Eec-----------CceeEEEcCCCeEEEEEe--CCEEEEE
Q 020021 126 SLSLCSSKDCFISGSL-DRTVLLWDQRA-EKCQGLL---RVQ-----------GRPAAAYDDQGLVFAVAF--GGYIRMF 187 (332)
Q Consensus 126 ~v~~~~~~~~l~s~s~-Dg~i~iWd~~~-~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~--~~~i~vw 187 (332)
.+++++++++|+++.. -|.|.+.-++. +...... ... ..-.+.+.|++.++.+.. ...|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 7899999999988875 46888887754 3332221 111 112456667776555443 3689999
Q ss_pred ECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EEEcCCCeEEEEEccC--CeE--eEEeee---cCCCCCcceEEEE
Q 020021 188 DARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFR--GTL--LSTYNV---KPVSRNSTLEASF 259 (332)
Q Consensus 188 d~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~~~~dg~i~i~d~~~--~~~--~~~~~~---~~~~~~~~~~v~~ 259 (332)
++......+.....+ ..-..-+-++|+|+|++. +++-.+++|-+|.... ++. ++++.. .....+...++..
T Consensus 173 ~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 173 DLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 987443333222222 122355779999999986 4566789999999866 322 222211 1223445567889
Q ss_pred CCCCCEEEEEcC-CCcEEEEECCCC-ceE---EEecCCCCCCceEEeCCCeeEEEeccce---EEEe--ccccccccc
Q 020021 260 SPEGMFVISGSG-DGSVYAWSVRSG-KEV---ASWMSFDTEPPVIKWTPGSLMFVTGSSE---LSFW--IPDLSKLGA 327 (332)
Q Consensus 260 spdg~~l~sgs~-Dg~i~vWd~~~~-~~~---~~~~~~~~~v~~l~~sp~~~~l~t~~~d---~~~w--~~~~~~~~~ 327 (332)
+|||+||.+... ...|-++.+... ..+ .....+...+....|+|++++|+.+..+ +.++ ++...+|.+
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 999999998732 227888887542 222 2334555557889999999999988764 5555 455555544
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.3e-09 Score=99.03 Aligned_cols=279 Identities=20% Similarity=0.306 Sum_probs=174.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeeeEEeeec--ccceeEEEEccCCCE---EEEecCCCCCceeEEEE
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTA-ATCLKTINSK--KYGVDLVCFTSHPTT---VIYSSKNGWDESLRLLS 107 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~---~~~~s~~g~d~~v~v~d 107 (332)
.+++.+++++|.|+-+|.++.-| +.+-|+.. ++...-+ .| .-.|..+-|++++.. ++..+ ...-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts----~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTS----NQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecC----cchhhhhh
Confidence 46788899999999998888776 44557753 2221111 12 122455667776653 33322 34456788
Q ss_pred ccC---CceEEEeecccccEEEEEecCC-CCeEEEeeCCCcEEEEeCCCceEEEEEE---ecCceeEEEcC-CCeEEEEE
Q 020021 108 LHD---NKYLRYFKGHHDRVVSLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDD-QGLVFAVA 179 (332)
Q Consensus 108 ~~~---~~~~~~~~~h~~~V~~v~~~~~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~ 179 (332)
+.- ...-..+.||...|+.+-|+|+ ...+++++-|-.+..||+++...-.-.. ....+.+.+.. ++.+++.+
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 643 2234567899999999999995 5689999999999999998765321111 11233344443 55677777
Q ss_pred eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEE
Q 020021 180 FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS 258 (332)
Q Consensus 180 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~ 258 (332)
.++.|++||.|.... ....+.++.+.++.+.|..- -..+.+++.|++|+.||..+......... ....+++.-.
T Consensus 178 hg~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r 252 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGR 252 (1081)
T ss_pred cCCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceecc
Confidence 788999999987543 23344456677777777643 35678899999999999876543222221 1223445555
Q ss_pred ECCCC--CEEEEEcC---------CCcEEEEECCCC-ceEEEecCCCCCCceEEeCCC----------eeEEEeccce--
Q 020021 259 FSPEG--MFVISGSG---------DGSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPG----------SLMFVTGSSE-- 314 (332)
Q Consensus 259 ~spdg--~~l~sgs~---------Dg~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~----------~~~l~t~~~d-- 314 (332)
|-|=| .++.---. +..-..|++.++ +.++++.+|+..|...-|... .-+|+|=|.|
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 55533 22221111 222334554433 458999999998877777442 2489998887
Q ss_pred EEEeccccc
Q 020021 315 LSFWIPDLS 323 (332)
Q Consensus 315 ~~~w~~~~~ 323 (332)
+++|-.+.+
T Consensus 333 lrlWpI~~~ 341 (1081)
T KOG0309|consen 333 LRLWPIDSQ 341 (1081)
T ss_pred eEeeeccHH
Confidence 788865443
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-08 Score=86.88 Aligned_cols=266 Identities=15% Similarity=0.234 Sum_probs=163.0
Q ss_pred CcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCe-----------------------------------eeEEe-eecc
Q 020021 35 GRISSMDFHKSS--SYLVTASDDESIRLYDVTAAT-----------------------------------CLKTI-NSKK 76 (332)
Q Consensus 35 ~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~-----------------------------------~~~~~-~~~~ 76 (332)
..|+.|.|.+++ ..++....|++|++|.+.... |.+.+ .+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 568889998776 457788999999999874211 11112 2456
Q ss_pred cceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc-e--EEEeec-----ccccEEEEEecC-CCCeEEEeeCCCcEEE
Q 020021 77 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-Y--LRYFKG-----HHDRVVSLSLCS-SKDCFISGSLDRTVLL 147 (332)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~-~--~~~~~~-----h~~~V~~v~~~~-~~~~l~s~s~Dg~i~i 147 (332)
+.+.++++..+...++++- |-.|.+|+++--. . +..++. -+.-|++..|+| .-+.|+..|..|+|++
T Consensus 165 yhiNSIS~NsD~Et~lSAD----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred eEeeeeeecCccceEeecc----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 6677888888888877653 6789999876422 1 223333 345688999999 4678999999999999
Q ss_pred EeCCCce-EEE---EEEec--------------CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC----
Q 020021 148 WDQRAEK-CQG---LLRVQ--------------GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD---- 205 (332)
Q Consensus 148 Wd~~~~~-~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~---- 205 (332)
-|++... |.. .+..+ ......+++.|.++..-.--+|++||+.... .+...+.+...
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~-~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA-KPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC-CcceEEeehHhHHHH
Confidence 9998432 111 11111 1123566788888877666899999985433 33433333211
Q ss_pred ---------CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC-cceEEEECCCCCEEEEEcCCCcE
Q 020021 206 ---------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN-STLEASFSPEGMFVISGSGDGSV 275 (332)
Q Consensus 206 ---------~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~v~~spdg~~l~sgs~Dg~i 275 (332)
..+-..|++|.++.++++|+-..-.++++...|.... +.......+ ....+ +.-+.+.+++.....
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d-~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~ 395 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED-FTLEASRKNMKPRKV---LKLRLVSSSGKRKRD 395 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCccee-ecccccccCCccccc---ccceeeecCCCcccc
Confidence 1233568999999999999999999999977665432 221111111 11111 122444455544432
Q ss_pred EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc-ceEEE
Q 020021 276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS-SELSF 317 (332)
Q Consensus 276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~-~d~~~ 317 (332)
.+| +-. ..+...+.+.+|+|..+.++.+. ..+.+
T Consensus 396 ~~~-------vd~-ldf~kkilh~aWhp~en~ia~aatnnlyi 430 (433)
T KOG1354|consen 396 EIS-------VDA-LDFRKKILHTAWHPKENSIAVAATNNLYI 430 (433)
T ss_pred ccc-------cch-hhhhhHHHhhccCCccceeeeeecCceEE
Confidence 222 111 12334566788999887666543 33444
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.00 E-value=1.2e-08 Score=87.58 Aligned_cols=217 Identities=16% Similarity=0.260 Sum_probs=143.5
Q ss_pred eEecHHHHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEc-CCCe-------------------------
Q 020021 14 LELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDV-TAAT------------------------- 67 (332)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~-~~~~------------------------- 67 (332)
+.+.|++- ++...+....|++.|+.+-|+....++++.+.|+.+ .|-. +.+.
T Consensus 95 fs~sedfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 95 FALSEDFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEhhhhhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 55666554 556677888999999999999888999999999875 3422 2211
Q ss_pred ----------------eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc-eEEEeecccccEEEEEec
Q 020021 68 ----------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLC 130 (332)
Q Consensus 68 ----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~ 130 (332)
.+.++.+|...+.+++|.+....+++++. |..+.+||+..++ ....+.+|.+.|..+...
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~---d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS---DHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc---cCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 12245566667778888888888887765 7899999997655 356789999999999988
Q ss_pred CCCCeEEEeeCCCcEEEEeCCCceEEEE--E---------Ee------------------c-----C--ceeEEEcCCCe
Q 020021 131 SSKDCFISGSLDRTVLLWDQRAEKCQGL--L---------RV------------------Q-----G--RPAAAYDDQGL 174 (332)
Q Consensus 131 ~~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~---------~~------------------~-----~--~~~~~~~~~~~ 174 (332)
+.-++++|++.||.|.+||++....... + +. + + .+....+....
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~ 329 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSS 329 (404)
T ss_pred hhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccc
Confidence 8889999999999999999864332100 0 00 0 0 00011112222
Q ss_pred EEEEEeCCEEEEEECcc-----CCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC
Q 020021 175 VFAVAFGGYIRMFDARK-----YEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (332)
Q Consensus 175 ~~~~~~~~~i~vwd~~~-----~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~ 237 (332)
+...++.-.+|+-|.-. ..+.++.++... + ..+..+.+-.+-..+++++.|+.|+|||++.
T Consensus 330 ~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~-tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 330 YPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-K-TGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccceeEEEEecccchhhhcCCCCcccccccc-c-cceeEEEhhhhccceeecCCceEEEEEechh
Confidence 33334444555554321 111223222211 1 3567777777778899999999999999753
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.99 E-value=1.1e-06 Score=80.82 Aligned_cols=227 Identities=17% Similarity=0.096 Sum_probs=136.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~ 125 (332)
+..+..++.++.|.-+|..+|+.+-............ ..++..++.++. ++.+..+|.++|+.+...... +.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p--~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~~ 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV--GADGGLVFVGTE---KGEVIALDAEDGKELWRAKLS-SEVL 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce--EEcCCEEEEEcC---CCEEEEEECCCCcEeeeeccC-ceee
Confidence 6788889999999999999999876554332111111 123556666543 678999999999877654422 2222
Q ss_pred EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-------eEEEcCCCeEEEEEeCCEEEEEECccCCCCCee
Q 020021 126 SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFD 198 (332)
Q Consensus 126 ~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~ 198 (332)
+.... .++.++.++.|+.+..||.++++.+-........ .... .++.++.+..++.+..+|.++.+.. -
T Consensus 139 ~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~--W 214 (377)
T TIGR03300 139 SPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPL--W 214 (377)
T ss_pred cCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEe--e
Confidence 21111 3456777788999999999988876554432211 1111 1345555556788888887654311 0
Q ss_pred EEEecCCCC--C---ceeEEEcC--CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021 199 IFSVGGDIS--D---ANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 271 (332)
Q Consensus 199 ~~~~~~~~~--~---v~~v~~s~--dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~ 271 (332)
......... . ...+.-+| .+..+..++.+|.++.+|..+|+.+-..... . . .....++..++.++.
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~-~--~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS----S-Y--QGPAVDDNRLYVTDA 287 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC----C-c--cCceEeCCEEEEECC
Confidence 001100000 0 00000011 2456677778999999999999876443311 1 1 112236778888889
Q ss_pred CCcEEEEECCCCceEEEe
Q 020021 272 DGSVYAWSVRSGKEVASW 289 (332)
Q Consensus 272 Dg~i~vWd~~~~~~~~~~ 289 (332)
||.++.+|..+++.+...
T Consensus 288 ~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCeEEEEECCCCcEEEcc
Confidence 999999999999877654
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=5.6e-07 Score=92.29 Aligned_cols=223 Identities=13% Similarity=0.203 Sum_probs=136.2
Q ss_pred EEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeeeEEeeec-----------------ccceeEEEEccCCCEEEEecCCC
Q 020021 37 ISSMDFHKSSSYLVT-ASDDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNG 98 (332)
Q Consensus 37 I~~i~~s~dg~~l~t-gs~D~tv~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~s~~g 98 (332)
...|+++++++.|.. -...+.|+.+|..++.. .++.+. -.....+++++.+..++.+..
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-- 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-- 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence 468899998876544 44557899999877543 333210 012346888886666655532
Q ss_pred CCceeEEEEccCCceEEEeec---------c------cccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEEEEEEec
Q 020021 99 WDESLRLLSLHDNKYLRYFKG---------H------HDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQ 162 (332)
Q Consensus 99 ~d~~v~v~d~~~~~~~~~~~~---------h------~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 162 (332)
.++.|++||..++... .+.+ + .....+++++|+++ .+++-+.++.|++||+.++..... . .
T Consensus 703 ~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~-~-g 779 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL-A-G 779 (1057)
T ss_pred CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE-E-e
Confidence 2678999998776532 2211 1 12346799999988 556667789999999876542111 0 0
Q ss_pred CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE
Q 020021 163 GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 242 (332)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~ 242 (332)
+.+. + +. .. .++.+.. +.... ........++++++|.++++...+++|++||..++....
T Consensus 780 g~~~--~-~~-~l--------~~fG~~d----G~g~~----~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 780 GDPT--F-SD-NL--------FKFGDHD----GVGSE----VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred cccc--c-Cc-cc--------ccccCCC----Cchhh----hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 0000 0 00 00 0001000 00000 001123578999999999999999999999998776543
Q ss_pred Eeeec----------CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021 243 TYNVK----------PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 243 ~~~~~----------~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
..... ...-+....++++++|+.+++-+.+++|++||+.+++.
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 22110 00112455789999999999889999999999988764
No 270
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=4.4e-10 Score=106.62 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=99.6
Q ss_pred HHhcccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC
Q 020021 20 ILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW 99 (332)
Q Consensus 20 ~~~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~ 99 (332)
++..++.-++|+.|+...+|++|+-+.++|+.|+.-|.|++|++.+|.....+..|+.+++.+.-+.++..++++++.+
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S- 1165 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS- 1165 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-
Confidence 4577889999999999999999999999999999999999999999999999999999999988888888877765422
Q ss_pred CceeEEEEccC-CceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEEEeCCCceEE
Q 020021 100 DESLRLLSLHD-NKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQ 156 (332)
Q Consensus 100 d~~v~v~d~~~-~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~iWd~~~~~~~ 156 (332)
..-..+|++.+ +...+++.+ -.++.|+.... +++.... ....+||+.++...
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEA-DDALLYDVQTCSPL 1219 (1516)
T ss_pred CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccc-cceEEEecccCcHH
Confidence 33577999865 444555543 24566765422 2232233 45678888876543
No 271
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=7.8e-07 Score=82.46 Aligned_cols=182 Identities=11% Similarity=0.073 Sum_probs=110.9
Q ss_pred ceeEEEEccCCCE-EEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEE-EeeCCC--cEEEEeCCCc
Q 020021 78 GVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFI-SGSLDR--TVLLWDQRAE 153 (332)
Q Consensus 78 ~v~~~~~~~~~~~-~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~-s~s~Dg--~i~iWd~~~~ 153 (332)
....-.|+|+++. +++.+..+-+..|.++|+.+++...... ..+......|+|||+.++ +.+.++ .|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4566789999986 6655544335689999998887544433 445556678999998665 444443 3444444333
Q ss_pred eEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--eE
Q 020021 154 KCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G--HI 230 (332)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g--~i 230 (332)
...... ........-.|||||+.++..+.. + .|
T Consensus 268 ~~~~LT--------------------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 268 TLTQIT--------------------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNI 303 (419)
T ss_pred cEEEcc--------------------------------------------cCCCccCccEECCCCCEEEEEECCCCCceE
Confidence 211100 000001223699999877766543 3 68
Q ss_pred EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---------CcEEEEECCCCceEEEecCCCCCCceEEe
Q 020021 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVYAWSVRSGKEVASWMSFDTEPPVIKW 301 (332)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---------g~i~vWd~~~~~~~~~~~~~~~~v~~l~~ 301 (332)
++.|+.+++...... . . .. ...|||||++|+-.+.. ..|++.|+.++.. ..+... ......+|
T Consensus 304 y~~dl~~g~~~rlt~-~-g--~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~ 375 (419)
T PRK04043 304 FMKKLNSGSVEQVVF-H-G--KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRF 375 (419)
T ss_pred EEEECCCCCeEeCcc-C-C--Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEE
Confidence 888988776533221 1 1 11 24899999998877654 2688888877653 444433 23345889
Q ss_pred CCCeeEEEecc
Q 020021 302 TPGSLMFVTGS 312 (332)
Q Consensus 302 sp~~~~l~t~~ 312 (332)
+|||++++-.+
T Consensus 376 SPDG~~I~f~~ 386 (419)
T PRK04043 376 SSDGGSIMFIK 386 (419)
T ss_pred CCCCCEEEEEE
Confidence 99998765543
No 272
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=9.3e-06 Score=69.94 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=138.8
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEc-cCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021 39 SMDFHK-SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116 (332)
Q Consensus 39 ~i~~s~-dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~ 116 (332)
++.|.+ ++.++++--..+.|..||..+++... +.... ...+++. ++ ..++.+.. ..+.++|.++++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~----~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADS----GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEET----TCEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEc----CceEEEecCCCcEEEE
Confidence 567887 77778887788999999998876532 22222 4455666 45 45555542 3466779988865433
Q ss_pred eec-----ccccEEEEEecCCCCeEEEeeCC--------CcEEEEeCCCceEEEEEE-ecCceeEEEcCCCeEEEEE--e
Q 020021 117 FKG-----HHDRVVSLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFAVA--F 180 (332)
Q Consensus 117 ~~~-----h~~~V~~v~~~~~~~~l~s~s~D--------g~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~ 180 (332)
+.. .....+.+++.++|+..++-... |.+..++.. ++...... ....+..++++++..+.++ .
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence 332 45678899999999987776644 457777766 44433332 2334567788877654444 3
Q ss_pred CCEEEEEECccCCC--C-CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 181 GGYIRMFDARKYEK--G-PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 181 ~~~i~vwd~~~~~~--~-~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
.+.|..+++..... . +...............+++..+|.+.++....+.|.++|.. |+++..+... ...++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEE
Confidence 57888888753221 0 11112222222235679999999999998899999999987 9988887753 2367789
Q ss_pred EE-CCCCCEEEEEc
Q 020021 258 SF-SPEGMFVISGS 270 (332)
Q Consensus 258 ~~-spdg~~l~sgs 270 (332)
+| .|+.+.|+..+
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99 57766665443
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=1.8e-08 Score=88.13 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=97.5
Q ss_pred EEecCCCCeEEEeeCCCcEEEEeCCCce----EEEEEEecCceeE--EEcCCCeEEEEEeCC---EEEEEECccCCCCCe
Q 020021 127 LSLCSSKDCFISGSLDRTVLLWDQRAEK----CQGLLRVQGRPAA--AYDDQGLVFAVAFGG---YIRMFDARKYEKGPF 197 (332)
Q Consensus 127 v~~~~~~~~l~s~s~Dg~i~iWd~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~i~vwd~~~~~~~~~ 197 (332)
+..+++++.||.+-.++...+.++..+. +......+..+.+ ....+..++.+-..| .+.+|.....
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~----- 142 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG----- 142 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-----
Confidence 3455666667666666665555554332 2222222222211 111222222222223 3444443321
Q ss_pred eEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEE
Q 020021 198 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA 277 (332)
Q Consensus 198 ~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~v 277 (332)
......||.+.+..|++|||++.++++..|++|++-.......+..|-. +|...|..++.- +++.|+|||-|+++++
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~-~~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLT-DNYLLLSGSGDKTLRL 219 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeec-cCceeeecCCCCcEEE
Confidence 1123347778899999999999999999999999988766666655543 466677777764 5677999999999999
Q ss_pred EECCCCceEEEe
Q 020021 278 WSVRSGKEVASW 289 (332)
Q Consensus 278 Wd~~~~~~~~~~ 289 (332)
||+.+|+.+.++
T Consensus 220 Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 220 WDITSGKLLDTC 231 (390)
T ss_pred EecccCCccccc
Confidence 999999987765
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=1.9e-08 Score=87.90 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=105.2
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----eeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (332)
Q Consensus 37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~ 112 (332)
+..+..++++.++|.+-.++...++++.... ++....... .-..+.|.........+-..|-...+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 4456677888888888888876677665332 222222111 1233444444444444444454566777776653
Q ss_pred eEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021 113 YLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKY 192 (332)
Q Consensus 113 ~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~ 192 (332)
+..-+-||-..++.|+++||+++++|+.+|..||+=.......+..+
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--------------------------------- 189 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--------------------------------- 189 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh---------------------------------
Confidence 34456789999999999999999999999999998554221111111
Q ss_pred CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021 193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (332)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (332)
. .||..-|..++.-+ ++.|++++.|+++++||..+|+.++++.+
T Consensus 190 --------c-lGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 190 --------C-LGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred --------c-cccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccch
Confidence 1 13333444455543 45589999999999999999988877643
No 275
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=3.2e-09 Score=63.44 Aligned_cols=38 Identities=34% Similarity=0.660 Sum_probs=36.3
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd 149 (332)
+++.++++|.+.|++++|+|++.+|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=5.6e-07 Score=82.02 Aligned_cols=248 Identities=19% Similarity=0.356 Sum_probs=151.0
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE--EEE--ecCCCCCceeEEEEccCCce
Q 020021 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIY--SSKNGWDESLRLLSLHDNKY 113 (332)
Q Consensus 38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~--~s~~g~d~~v~v~d~~~~~~ 113 (332)
++++|++|..+.| =-.-+.+.+|+....+.+. -.-|..++....++|.+.. ++. -.+.|.-..+|+|-..-...
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 4788998875532 2223569999987633221 1223456777788887542 211 12346667899998752211
Q ss_pred -----EEEeecccccEEEEEecCCCC---eEEEeeCCC---------cEEEEeCCCceEEEEEE-ecCceeEEEcCCCeE
Q 020021 114 -----LRYFKGHHDRVVSLSLCSSKD---CFISGSLDR---------TVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLV 175 (332)
Q Consensus 114 -----~~~~~~h~~~V~~v~~~~~~~---~l~s~s~Dg---------~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 175 (332)
.++|- ...=..+.|++-|. .|++..-|+ ++.+.++....+.-.+. ..-.....+.+++.-
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11111 11123455665554 233433444 56666666444432221 122335677788866
Q ss_pred EEEEeC---CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEEccCCeEeEEeeecCC
Q 020021 176 FAVAFG---GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 176 ~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~ 249 (332)
|++.++ ..+.++|++-.- .+.. ...+-+.+-|||.|++++.++. .|.|-+||+.+.+++..+..
T Consensus 285 F~VvyGfMPAkvtifnlr~~~-----v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--- 354 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGKP-----VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--- 354 (566)
T ss_pred EEEEEecccceEEEEcCCCCE-----eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---
Confidence 666654 789999987421 1221 1235578889999999988765 48999999998877776652
Q ss_pred CCCcceEEEECCCCCEEEEEcC------CCcEEEEECCCCceEEEecCCCCCCceEEeCC
Q 020021 250 SRNSTLEASFSPEGMFVISGSG------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTP 303 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sgs~------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp 303 (332)
...+-+.|+|||+|++|+.. |..++||++ +|..+..-+ +..+...+.|-|
T Consensus 355 --~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~-f~sEL~qv~W~P 410 (566)
T KOG2315|consen 355 --ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM-FKSELLQVEWRP 410 (566)
T ss_pred --CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh-hhHhHhheeeee
Confidence 22334799999999999966 788999999 577665422 233577788876
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.2e-06 Score=79.85 Aligned_cols=261 Identities=13% Similarity=0.201 Sum_probs=150.0
Q ss_pred cEEEEEECCCCCEEEEEeCC-----------CcEEEEEcCCCeeeEEeeec--ccce-eEEEEccCCCEEEEecCCCCCc
Q 020021 36 RISSMDFHKSSSYLVTASDD-----------ESIRLYDVTAATCLKTINSK--KYGV-DLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D-----------~tv~iwd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
.|.-+.|||..+||+|=|.- ..++|||+.+|...+.+... ...+ ....|+.+.++++-... +
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----~ 326 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----N 326 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----c
Confidence 36788999999999996632 57999999999998887652 2222 34678888888776542 5
Q ss_pred eeEEEEccCCceEEEeec---ccccEEEEEecCCCCeEEEeeCC-----CcEEEEeCCCceEEEEEEecCcee--EEEcC
Q 020021 102 SLRLLSLHDNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQGRPA--AAYDD 171 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~---h~~~V~~v~~~~~~~~l~s~s~D-----g~i~iWd~~~~~~~~~~~~~~~~~--~~~~~ 171 (332)
.|.+++...- .-+.+ .-..|....|+|.+..||.-... ..+-+-.+-+.+.+.+..+..+.. .-+..
T Consensus 327 sisIyEtpsf---~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 327 SISIYETPSF---MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred eEEEEecCce---eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence 6888876552 22222 23456777899986555533211 011122222222222211111111 12234
Q ss_pred CCeEEEEEeCC-----------EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC---CCeEEEEEccC
Q 020021 172 QGLVFAVAFGG-----------YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFR 237 (332)
Q Consensus 172 ~~~~~~~~~~~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~---dg~i~i~d~~~ 237 (332)
+|.+++.-.+. .+.|+-++..+. +.....+ ...+...++-|.|..+++-+. ..++..|...+
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeec---chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 55555544321 233343433221 1111211 134566778899977665432 34677776652
Q ss_pred -C---eEeEEeeecCCCCCcceEEEECCCCCEEEEE---cCCCcEEEEECCCCceE-EEecCCCCCCceEEeCCCeeEEE
Q 020021 238 -G---TLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRSGKEV-ASWMSFDTEPPVIKWTPGSLMFV 309 (332)
Q Consensus 238 -~---~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg---s~Dg~i~vWd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~ 309 (332)
+ .++..+. ...++.+-|||.|++++.+ |..|.+..+|....... .....|. ..+.+-|.|.|++++
T Consensus 480 ~~~~~~lVk~~d-----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 480 NIKKPSLVKELD-----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVV 553 (698)
T ss_pred CCCchhhhhhhc-----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEE
Confidence 1 1222221 2345578999999999887 55789999998742222 1223344 357799999999999
Q ss_pred eccc
Q 020021 310 TGSS 313 (332)
Q Consensus 310 t~~~ 313 (332)
|+++
T Consensus 554 T~ss 557 (698)
T KOG2314|consen 554 TSSS 557 (698)
T ss_pred Eeee
Confidence 9875
No 278
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.8e-08 Score=88.11 Aligned_cols=236 Identities=16% Similarity=0.180 Sum_probs=153.7
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCE--EEEecCCCCC
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWD 100 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~-D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d 100 (332)
.+.++.|+.|.+.|.+++.+-|+-++.|.+. |+.+|++|+++-..+.-+....-+-...++...+.. .++.+. .-+
T Consensus 43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~-~~s 121 (558)
T KOG0882|consen 43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL-FKS 121 (558)
T ss_pred eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeec-ccC
Confidence 5678889999999999999999999999888 999999999865544322221111112223333322 222221 225
Q ss_pred ceeEEEEccCCc-eEE-EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021 101 ESLRLLSLHDNK-YLR-YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 101 ~~v~v~d~~~~~-~~~-~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (332)
+.+.++|-.... +.. .-+-|..+|..+.+.+.++.++|....|.|..|..... ++-+.. ...
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-----~qfPr~-~l~---------- 185 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP-----FQFPRT-NLN---------- 185 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc-----ccCccc-ccc----------
Confidence 678888854433 222 23459999999999999999999999999999986531 110000 000
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee------------
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV------------ 246 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------ 246 (332)
|.++. ...++..........++.|||+|..+..-+.|..|++++..+|.+.+.+.-
T Consensus 186 --------~~~K~----eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~ 253 (558)
T KOG0882|consen 186 --------FELKH----ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP 253 (558)
T ss_pred --------ccccc----cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence 00000 000111111223456789999999999999999999999998876655410
Q ss_pred ------------------cCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEe
Q 020021 247 ------------------KPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASW 289 (332)
Q Consensus 247 ------------------~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~ 289 (332)
.-.....-+.+.|...|+||+-|+.=| |+|.++.+++.+..+
T Consensus 254 y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 254 YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 000111223578999999999998877 999999998776554
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=1.2e-06 Score=73.11 Aligned_cols=232 Identities=15% Similarity=0.115 Sum_probs=138.8
Q ss_pred CEEEEEeCCCcEEEEEcCCCeee-EEeeecccceeEEEEccCCC-EEEEecCCCCCceeEEEEccCCceEEEeecccccE
Q 020021 47 SYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 124 (332)
Q Consensus 47 ~~l~tgs~D~tv~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V 124 (332)
.+||.||.-|...+|...+.+.. +....+...|..+.-..+.. .+..++. |.++++.++..+.....+....-.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~h~~~~~~ 161 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAVHNQNLTQ 161 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCcccceeeccccce
Confidence 58999999999999999876543 22333333333221111111 2333332 7788888887654433322222237
Q ss_pred EEEEecCCCCeEEEeeCCCcEEEEeCCCceE--EEEEEec---CceeEEEcCCCeEEEEEe-CCEEEEEECccCCCCCee
Q 020021 125 VSLSLCSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRVQ---GRPAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFD 198 (332)
Q Consensus 125 ~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~~~~~ 198 (332)
.++++++|++++++.+.-..|-.+.+..... ......+ +--...++.....+++++ ||++.+||+|.....-..
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 8899999999999999999999998754332 2211111 112345555566666665 899999999976543222
Q ss_pred EEE-ecCCCCCceeEEEcCCCC--EEEEEcCCCeEEEEEccCCeEeEEeeecC-----CCCCcceEEEECCCCCEEEEEc
Q 020021 199 IFS-VGGDISDANVVKFSNDGR--LMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPEGMFVISGS 270 (332)
Q Consensus 199 ~~~-~~~~~~~v~~v~~s~dg~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~v~~spdg~~l~sgs 270 (332)
.-+ -..|...++.|.||+.|. +|...---+.+++.|++++...+.+...+ .....+....|+.++.-+...+
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 111 123456789999999774 56666666789999999876544332211 1112244456666666555555
Q ss_pred CCCcEEEEECCC
Q 020021 271 GDGSVYAWSVRS 282 (332)
Q Consensus 271 ~Dg~i~vWd~~~ 282 (332)
++. +.-|++.+
T Consensus 322 e~~-~ae~ni~s 332 (344)
T KOG4532|consen 322 ELQ-GAEYNILS 332 (344)
T ss_pred chh-hheeeccc
Confidence 443 44555544
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=3e-07 Score=86.07 Aligned_cols=271 Identities=13% Similarity=0.143 Sum_probs=167.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe---------------eeEEeeecccceeEEEEccCCCEEEEecCC
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT---------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKN 97 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 97 (332)
.+....+++|+.+..++|.||.||-+++-.+.+.. .-+++.+|+..|..+.|....+++-++..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt- 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT- 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC-
Confidence 34567899999999999999999999999775421 23567899999999999988877766543
Q ss_pred CCCceeEEEEccCCceEEEe--ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-EEEecCceeEEEcCCCe
Q 020021 98 GWDESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQGL 174 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~~~~~--~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~ 174 (332)
++-|-||-+-.+.-...+ ...++-|.+++|..||..+..+-.||.|.+=.+..++.-. .++.....-+..+++..
T Consensus 92 --~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 --SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLE 169 (1189)
T ss_pred --CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHH
Confidence 678999988766532222 2345678899999999888777777776654443332211 11111112233344333
Q ss_pred -EEEEEeCCEEEEEECccCCCCCe----eEEEecCC---CCCceeEE--------EcCCCCEEEEEcCCCeEEEEEccCC
Q 020021 175 -VFAVAFGGYIRMFDARKYEKGPF----DIFSVGGD---ISDANVVK--------FSNDGRLMLLTTMEGHIHVLDSFRG 238 (332)
Q Consensus 175 -~~~~~~~~~i~vwd~~~~~~~~~----~~~~~~~~---~~~v~~v~--------~s~dg~~l~~~~~dg~i~i~d~~~~ 238 (332)
.+..-..|.+.++|....-..++ .....++. ...+-.+. .-||-..++++-.+|.++|..-...
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 22233457888887532100000 00000000 00111121 2358889999999999888654332
Q ss_pred eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC---------cEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEE
Q 020021 239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFV 309 (332)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg---------~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 309 (332)
.....+.. .-.+....|+|+|..||.++.|. .|..+ -.-|+.+.+++.....|+.++|-..|..++
T Consensus 250 ~~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy-sp~G~i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 250 PEPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY-SPYGHIVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred CCCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEe-ccchhheEEEecCCceeeeeEEcCCceEEE
Confidence 21111111 12344678999999999998754 23333 235677788887788899999987775554
Q ss_pred ec
Q 020021 310 TG 311 (332)
Q Consensus 310 t~ 311 (332)
.+
T Consensus 325 ~A 326 (1189)
T KOG2041|consen 325 IA 326 (1189)
T ss_pred EE
Confidence 43
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=8.3e-06 Score=73.81 Aligned_cols=267 Identities=12% Similarity=0.167 Sum_probs=163.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCc---------------EEEEEcCCCeeeEEeeecccc--ee-EEEEccCCCEEEEecCC
Q 020021 36 RISSMDFHKSSSYLVTASDDES---------------IRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSSKN 97 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~t---------------v~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~s~~ 97 (332)
.|.-+.|||.+.||.|=+.-.. +.+||..++..+..+.....+ .. .+.|+.+....+-..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-- 150 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-- 150 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc--
Confidence 4667889999999998765444 999999999998887665443 33 566776666544332
Q ss_pred CCCceeEEEEccCCce----EEEeecccccEEEEEecCCCC--eEE-----EeeCCCcEEEEeCCCceEEEEEEecCc--
Q 020021 98 GWDESLRLLSLHDNKY----LRYFKGHHDRVVSLSLCSSKD--CFI-----SGSLDRTVLLWDQRAEKCQGLLRVQGR-- 164 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~----~~~~~~h~~~V~~v~~~~~~~--~l~-----s~s~Dg~i~iWd~~~~~~~~~~~~~~~-- 164 (332)
.+.+.++++ ++.. .+.++ ...|....|+|-++ .|+ ..+.++.+++|.+..++.+.+..+-..
T Consensus 151 --~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~ 225 (561)
T COG5354 151 --GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG 225 (561)
T ss_pred --cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc
Confidence 246888887 3221 12222 24566777887533 344 245678899998876655443322111
Q ss_pred eeEEEcCCCeEEEEEe------------CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE--cCCCeE
Q 020021 165 PAAAYDDQGLVFAVAF------------GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT--TMEGHI 230 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~------------~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~--~~dg~i 230 (332)
...-+...+.++++-. ...+.+++++.... .. .. ....+|...+++|+++.+++. -..-.+
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V-~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~ 300 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PV-EK-DLKDPVHDFTWEPLSSRFAVISGYMPASV 300 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---ce-ec-cccccceeeeecccCCceeEEecccccce
Confidence 1122233332222110 13566776653221 11 10 224578899999999877654 477789
Q ss_pred EEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCceEE-EecCCCCCCceEEeCCCee
Q 020021 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKEVA-SWMSFDTEPPVIKWTPGSL 306 (332)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~~~-~~~~~~~~v~~l~~sp~~~ 306 (332)
.++|++.. +. +....+ .-..+.|||.+++++.++-| |.|-+||......+. .+.+.+ ..-..|+||+.
T Consensus 301 s~~~lr~N-l~--~~~Pe~---~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~q 372 (561)
T COG5354 301 SVFDLRGN-LR--FYFPEQ---KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQ 372 (561)
T ss_pred eecccccc-eE--EecCCc---ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCce
Confidence 99998754 32 222222 23356899999999998765 589999987655544 443332 24466999998
Q ss_pred EEEecc--c----e--EEEecccc
Q 020021 307 MFVTGS--S----E--LSFWIPDL 322 (332)
Q Consensus 307 ~l~t~~--~----d--~~~w~~~~ 322 (332)
++-++. . | +++|+...
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEecCCCcccccCcceEEEEecC
Confidence 776643 2 2 78886544
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.79 E-value=2.9e-06 Score=71.78 Aligned_cols=240 Identities=16% Similarity=0.185 Sum_probs=130.3
Q ss_pred cEEEEEEC---CCCC-EEEEEeCCCcEEEEEcCCCeeeEEeee---cccc---eeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 36 RISSMDFH---KSSS-YLVTASDDESIRLYDVTAATCLKTINS---KKYG---VDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 36 ~I~~i~~s---~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
.++.+.|. .+|. .++-+-.+|.|.+|...-.+....+.+ ..-. ...+.|++.++.++.+-+ ++.+..
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~~ 147 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSISG 147 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEEE
Confidence 34445553 2344 456677778888887654333333322 1111 224567788888777654 345554
Q ss_pred EEccCCce--EEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCC-ceEEEE---EEecCceeEEEc-CCC-eEE
Q 020021 106 LSLHDNKY--LRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA-EKCQGL---LRVQGRPAAAYD-DQG-LVF 176 (332)
Q Consensus 106 ~d~~~~~~--~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~-~~~~~~---~~~~~~~~~~~~-~~~-~~~ 176 (332)
-+...... .+.++.|.-+++.+.|+. +.+.+.|||.|+.+..||++. ++++.. .+..++.....+ +.+ .++
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 44433333 337889999999999986 567999999999999999983 333221 122233222222 223 566
Q ss_pred EEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCC--CEEEEEcCCCeEEEEEccCCeEe--EEeeecCCCCC
Q 020021 177 AVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDG--RLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVSRN 252 (332)
Q Consensus 177 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~ 252 (332)
++++|..|++||.|+..++-+... + ...|=.+..+|.- ++++++--+| .+|.+...+... ..+.....|..
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~-v---~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK-V---GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred EeccccceeeeehhcccCccccCc-c---ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccc
Confidence 677899999999997654332211 1 1345556666542 3333333333 345554433211 11222223333
Q ss_pred cceEEEECCCCCEEEEEc-CCCcEE-EEECCCC
Q 020021 253 STLEASFSPEGMFVISGS-GDGSVY-AWSVRSG 283 (332)
Q Consensus 253 ~~~~v~~spdg~~l~sgs-~Dg~i~-vWd~~~~ 283 (332)
-+..-.|.....+|||++ .|+.|+ +|-..++
T Consensus 303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 222233333345678864 466655 6654443
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=1.7e-05 Score=67.18 Aligned_cols=169 Identities=13% Similarity=0.179 Sum_probs=105.9
Q ss_pred EEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC---------ceeEEEcC-------CCeEEEEEeCCEEEEE
Q 020021 124 VVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------RPAAAYDD-------QGLVFAVAFGGYIRMF 187 (332)
Q Consensus 124 V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~-------~~~~~~~~~~~~i~vw 187 (332)
=+.++|+||+..||.+...|+|+++|+....+. .+.... .....+-+ ...++...+.|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 457899999999999999999999998654332 221110 11112211 1256666677888777
Q ss_pred ECccCCCCC---eeEEEecCC-CCCceeEEEcCCCCEEEEEcCCCe-----------EEEEEccCCeEeEE---------
Q 020021 188 DARKYEKGP---FDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGH-----------IHVLDSFRGTLLST--------- 243 (332)
Q Consensus 188 d~~~~~~~~---~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~~dg~-----------i~i~d~~~~~~~~~--------- 243 (332)
-+....... ...++...+ +..++++.++|..++|++++.... +..|.+-++.+-..
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 653221111 123333333 347899999999999888764321 34454432211100
Q ss_pred --------------e---eecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC
Q 020021 244 --------------Y---NVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD 293 (332)
Q Consensus 244 --------------~---~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~ 293 (332)
+ .........+..+..||||+.||+...+|.|.+|++.+.+....+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 0 0011234567789999999999999999999999999988877765443
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=1.8e-07 Score=79.58 Aligned_cols=264 Identities=14% Similarity=0.244 Sum_probs=142.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-ee----EEeeeccc------------ceeEEEEcc-CCCEEEEec
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAAT-CL----KTINSKKY------------GVDLVCFTS-HPTTVIYSS 95 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~-~~----~~~~~~~~------------~v~~~~~~~-~~~~~~~~s 95 (332)
...|+++.|...|.||+||..-|.|-+|.-+... |- ..+++|.. .|..+.|.. .+..-+..+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3569999999999999999999999999765322 21 12334432 233344443 333222222
Q ss_pred CCCCCceeEEEEccCCceEEEee----------cccccEEEEE------ecCCCCeEEEeeCCCcEEEEeCCCceEEEEE
Q 020021 96 KNGWDESLRLLSLHDNKYLRYFK----------GHHDRVVSLS------LCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 159 (332)
Q Consensus 96 ~~g~d~~v~v~d~~~~~~~~~~~----------~h~~~V~~v~------~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 159 (332)
+-|.++++|.+..... +... ...+++++.. .+. ...++.+- -.|++. . ....
T Consensus 106 --tNdktiKlWKiyeknl-k~va~nnls~~~~~~~~g~~~s~~~l~lprls~-hd~iiaa~---p~rvya--N---aH~y 173 (460)
T COG5170 106 --TNDKTIKLWKIYEKNL-KVVAENNLSDSFHSPMGGPLTSTKELLLPRLSE-HDEIIAAK---PCRVYA--N---AHPY 173 (460)
T ss_pred --cCCceeeeeeeecccc-hhhhccccccccccccCCCcCCHHHhhcccccc-cceEEEec---cceecc--c---ccee
Confidence 1288999998855321 1100 0011111110 011 11111111 112221 0 0000
Q ss_pred EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCC-----CCceeEEEcCCC-CEEEEEcCCCeEEEE
Q 020021 160 RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDI-----SDANVVKFSNDG-RLMLLTTMEGHIHVL 233 (332)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~-----~~v~~v~~s~dg-~~l~~~~~dg~i~i~ 233 (332)
......+..+...+..+.+-.|.+|++.... +.+.+....++. .-+++..|+|.- ..+.-++..|.|++-
T Consensus 174 ---hiNSiS~NsD~et~lSaDdLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 174 ---HINSISFNSDKETLLSADDLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred ---EeeeeeecCchheeeeccceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 1112233334445555566678888765432 334444333321 235677888865 456667888999999
Q ss_pred EccCCeEeEE----e--eecC-------CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC-ceEEEecCC-------
Q 020021 234 DSFRGTLLST----Y--NVKP-------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-KEVASWMSF------- 292 (332)
Q Consensus 234 d~~~~~~~~~----~--~~~~-------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~~------- 292 (332)
|++...+-.. + ...+ .-...+..+.|+|+|+|+++-+. -+++|||+... +++.++.-|
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHH
Confidence 9874332110 1 0000 11234557889999999998864 58999999764 456665433
Q ss_pred -----CCCC---ceEEeCCCeeEEEeccce
Q 020021 293 -----DTEP---PVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 293 -----~~~v---~~l~~sp~~~~l~t~~~d 314 (332)
+..| ..+.||.|.+.+.+|+..
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccc
Confidence 2222 337889888888888865
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.69 E-value=6.1e-06 Score=74.12 Aligned_cols=168 Identities=13% Similarity=0.170 Sum_probs=114.8
Q ss_pred CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-cEEEEeCCCceEEEEEEecCce
Q 020021 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGRP 165 (332)
Q Consensus 87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-~i~iWd~~~~~~~~~~~~~~~~ 165 (332)
+|..++..|. +...+.+...+-.+ -.+|...|.-..+..+++-++-|..|| .+-++|..+++....
T Consensus 331 ~Gd~ia~VSR----GkaFi~~~~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~------- 397 (668)
T COG4946 331 NGDYIALVSR----GKAFIMRPWDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI------- 397 (668)
T ss_pred CCcEEEEEec----CcEEEECCCCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-------
Confidence 3444544442 34455444333322 236777788888888888888888888 778888766542211
Q ss_pred eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021 166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (332)
......+.++..+|||++++++.....+.++|+.+|.....-.
T Consensus 398 -------------------------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 398 -------------------------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred -------------------------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence 1123457788999999999999999999999999987643211
Q ss_pred ecCCCCCcceEEEECCCCCEEEEEcCCC----cEEEEECCCCceEEEecCCCCCCceEEeCCCeeEE
Q 020021 246 VKPVSRNSTLEASFSPEGMFVISGSGDG----SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMF 308 (332)
Q Consensus 246 ~~~~~~~~~~~v~~spdg~~l~sgs~Dg----~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 308 (332)
....-++..+|+|+++++|-+=.+| .|+++|+.+++... .+...+.=.+-+|.||++.|
T Consensus 441 ---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 441 ---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred ---cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEE
Confidence 1235677889999999999998887 79999998877543 22222223456788998755
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.68 E-value=0.00021 Score=64.54 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=87.9
Q ss_pred CCCceeEEEcCCCCEEEEEcCCC-eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021 206 ISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 284 (332)
Q Consensus 206 ~~~v~~v~~s~dg~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~ 284 (332)
...|....+.-++.-++.|..|| .+-|+|..+++.... + ..-+.+.++..+|||++++.+..-..+-+.|+.+++
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-E---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-e---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 34577777888888889999999 899999988875432 2 234567789999999999999888899999999987
Q ss_pred eEEEecCCCCCCceEEeCCCeeEEEeccce------EEEecccc
Q 020021 285 EVASWMSFDTEPPVIKWTPGSLMFVTGSSE------LSFWIPDL 322 (332)
Q Consensus 285 ~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d------~~~w~~~~ 322 (332)
....=+.-.+-|+.+.|||+++.++-+-.+ +++.+.+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 543334445678999999999999988654 66665554
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.67 E-value=1.9e-07 Score=95.10 Aligned_cols=186 Identities=20% Similarity=0.328 Sum_probs=127.6
Q ss_pred eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEE-EEeCCEEEEEECccC
Q 020021 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFA-VAFGGYIRMFDARKY 192 (332)
Q Consensus 117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~i~vwd~~~~ 192 (332)
++.|-..|.++.-+|..-+-+||+.||.+++|....+..+-.++..+.. ...+...|.-+. +..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 4556678888888898888999999999999998887777666654432 234445555444 44689999998751
Q ss_pred CCCCeeEEEecCCCCCceeEEEcCCCCEEEEE---cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021 193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (332)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg 269 (332)
.++ ..-..|....+.+.|-. +.++++ +.++.+.+||........- .+..|...++.+++-|..+.|+||
T Consensus 2283 --k~~--~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~--v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 --KPY--TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL--VHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred --cce--eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce--eeeecCCCceEEEEcCcceEEEec
Confidence 222 22222323334444433 445544 3567899999654322111 113466677889999999999999
Q ss_pred cCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce--EEEeccc
Q 020021 270 SGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPD 321 (332)
Q Consensus 270 s~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~ 321 (332)
|.+|.|++||+...+.++++.. +. ...+|++|+.+ +++|..+
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcc
Confidence 9999999999988887777654 34 55688888876 7777654
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.67 E-value=2.9e-05 Score=66.24 Aligned_cols=220 Identities=19% Similarity=0.191 Sum_probs=128.1
Q ss_pred CCCcEEEEEcCCCeeeEEeeecccceeEEE-EccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCC
Q 020021 54 DDESIRLYDVTAATCLKTINSKKYGVDLVC-FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSS 132 (332)
Q Consensus 54 ~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~ 132 (332)
.+++|..||..+|+.+-........-..++ ..+.+..++.+.. ++.+..+|..+|+.+..... ...+.... ...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-ccccccee-eec
Confidence 378999999999999877754221111121 2334556666532 78899999999998766653 11111111 223
Q ss_pred CCeEEEeeCCCcEEEEeCCCceEEEEE-EecC-----ceeEEEc-CCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCC
Q 020021 133 KDCFISGSLDRTVLLWDQRAEKCQGLL-RVQG-----RPAAAYD-DQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGD 205 (332)
Q Consensus 133 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~~~-----~~~~~~~-~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~ 205 (332)
+..++.++.|+.+..+|.++++..-.. .... ....... .+..++....++.|..+|.++.+. .-.......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~--~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL--LWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE--EEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE--EEEeecCCC
Confidence 456666668889999999999887663 3221 1111111 134455555588999999875431 111122111
Q ss_pred CC--------CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEE
Q 020021 206 IS--------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYA 277 (332)
Q Consensus 206 ~~--------~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~v 277 (332)
.. ....-....++ .+..++.++.+..+|..+++.+- ... .. ... ....+++..|+.++.|+.|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~-~~--~~~-~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKP-IS--GIY-SLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EEC-SS---EC-ECEECCCTEEEEEETTTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--Eec-CC--Ccc-CCceeeCCEEEEEeCCCEEEE
Confidence 10 11122223345 66667777754444999998652 221 11 111 124578888888889999999
Q ss_pred EECCCCceEE
Q 020021 278 WSVRSGKEVA 287 (332)
Q Consensus 278 Wd~~~~~~~~ 287 (332)
||+.+++.+.
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999998764
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.67 E-value=2.4e-05 Score=66.73 Aligned_cols=216 Identities=19% Similarity=0.150 Sum_probs=124.9
Q ss_pred CceeEEEEccCCceEEEeec---ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCCCeE
Q 020021 100 DESLRLLSLHDNKYLRYFKG---HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLV 175 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~---h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~ 175 (332)
+++|..+|..+|+.+....- ....+.. ..++++.++.++.++.+..||..+++..-.+..+... ......++.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT--AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET--EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce--EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 56788999989888776642 2222211 2235677888899999999999999887777654321 1123345566
Q ss_pred EEEEeCCEEEEEECccCCCCCeeE-EEecCCCCC-ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCc
Q 020021 176 FAVAFGGYIRMFDARKYEKGPFDI-FSVGGDISD-ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS 253 (332)
Q Consensus 176 ~~~~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~-v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 253 (332)
+....++.+..+|.++.+. .-. ......... ........++..++++..++.|+.+|+.+|+.+-.+.........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccceeeeEecccCCcce--eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6666778999999765432 111 111111111 112233334778888888999999999999998766542211111
Q ss_pred -------ceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc--ceEEEeccccc
Q 020021 254 -------TLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS--SELSFWIPDLS 323 (332)
Q Consensus 254 -------~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~--~d~~~w~~~~~ 323 (332)
...-....++ .++.++.++.+..+|+.+++.+.... .. .+..+ ..+++..+..++ ..+..|++...
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~-~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS-GIYSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC-CccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1112222345 66677777864444999998664333 22 22221 234444444433 44777776553
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.67 E-value=5.5e-05 Score=76.61 Aligned_cols=246 Identities=13% Similarity=0.157 Sum_probs=141.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeC----C--CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE
Q 020021 33 YNGRISSMDFHKSSSYLVTASD----D--ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 106 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~----D--~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~ 106 (332)
+...-..|+|=.||.++|..+. . +.+|||+-+ |+...+-+.-..=-..++|.|.|..+++.....-...|..|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4444557899999999988875 2 689999876 55333322222223468999999888776542223344445
Q ss_pred EccCCceEEE--e--ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE--EEEEecC---ceeEEEcCC-C---
Q 020021 107 SLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLLRVQG---RPAAAYDDQ-G--- 173 (332)
Q Consensus 107 d~~~~~~~~~--~--~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~~~~---~~~~~~~~~-~--- 173 (332)
.- +|-.... + ......|..+.|++|+..||-.-.|. |++|-...-+.- ..+..+. .....+++. .
T Consensus 287 Er-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 287 ER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred ec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 43 3322222 2 24556899999999999999877665 999976544321 1122111 111333331 1
Q ss_pred -----------------------------eEEEEEeCCEEEEEECccCC-CCCeeEEEecCCCCCceeEEEcCCCCEEEE
Q 020021 174 -----------------------------LVFAVAFGGYIRMFDARKYE-KGPFDIFSVGGDISDANVVKFSNDGRLMLL 223 (332)
Q Consensus 174 -----------------------------~~~~~~~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~ 223 (332)
..+++..+..+.+-.++... ++|+-.+.+.- ...++.++|++++..+++
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEE
Confidence 12222222333443333221 12222222222 357899999999998999
Q ss_pred EcCCCeEEEEEccCCeEe--------EEeee-------cCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCC
Q 020021 224 TTMEGHIHVLDSFRGTLL--------STYNV-------KPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRS 282 (332)
Q Consensus 224 ~~~dg~i~i~d~~~~~~~--------~~~~~-------~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~ 282 (332)
-..||.+.+|........ ..+.. ..........++|..++..++..+.+ ..+.++++..
T Consensus 444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 999999999985432211 11111 01122344567787777777666554 5788888743
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=2.9e-06 Score=70.94 Aligned_cols=175 Identities=9% Similarity=-0.035 Sum_probs=113.0
Q ss_pred EEEecCC-----CCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-----EEEcCCCeEEEEEeCCEEEEEECccCCCC
Q 020021 126 SLSLCSS-----KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-----AAYDDQGLVFAVAFGGYIRMFDARKYEKG 195 (332)
Q Consensus 126 ~v~~~~~-----~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~vwd~~~~~~~ 195 (332)
++.|.|. -.+|+.||.-|...+|.+.++.....+.-..... ...+....++-++.|.+++++++......
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4555543 3488999999999999988665432222111110 11122334555667888888887643332
Q ss_pred CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCc
Q 020021 196 PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS 274 (332)
Q Consensus 196 ~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~ 274 (332)
....+ ..-..+.+++|+|++.+++-+....|-.|.+.. ++.+......+. ...-....||.....+|.+..||+
T Consensus 152 ~~~h~----~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-~D~gF~~S~s~~~~~FAv~~Qdg~ 226 (344)
T KOG4532|consen 152 FAVHN----QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-SDHGFYNSFSENDLQFAVVFQDGT 226 (344)
T ss_pred ceeec----cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-CCCceeeeeccCcceEEEEecCCc
Confidence 22111 112368899999999999999999998888754 333322222221 223346789999999999999999
Q ss_pred EEEEECCCCceEE-----EecCCCCCCceEEeCCCe
Q 020021 275 VYAWSVRSGKEVA-----SWMSFDTEPPVIKWTPGS 305 (332)
Q Consensus 275 i~vWd~~~~~~~~-----~~~~~~~~v~~l~~sp~~ 305 (332)
+.|||++.-..+. +-..|++.+..+.|+|.|
T Consensus 227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred EEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 9999998743321 224688899999999854
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.66 E-value=2.9e-06 Score=76.70 Aligned_cols=240 Identities=14% Similarity=0.190 Sum_probs=152.2
Q ss_pred EEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEE
Q 020021 59 RLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFIS 138 (332)
Q Consensus 59 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s 138 (332)
..|+..+...-..+.....++..++++|.|..+++.-. ..|.+|+-.+...+..+. ...|..++|+|.+++|+|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~----~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA----AGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhc----cceEEccccchhheeeee--cCCceecccCcccceeee
Confidence 34444443333334446667888999999998887643 348899877765443333 457899999999999999
Q ss_pred eeCCCc---------------EEEEeCCCceEEEEEEecCce-----eEEEcCCCeEEEEEeCCEEEEEEC-ccCCCCCe
Q 020021 139 GSLDRT---------------VLLWDQRAEKCQGLLRVQGRP-----AAAYDDQGLVFAVAFGGYIRMFDA-RKYEKGPF 197 (332)
Q Consensus 139 ~s~Dg~---------------i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~vwd~-~~~~~~~~ 197 (332)
-+.... +.+||+.++..+..+.....+ ...++.+..+.+--....+.++++ .+....++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~ 168 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPF 168 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCch
Confidence 886544 899999999887766543322 344444454444335667888884 33333333
Q ss_pred eEEEecCCCCCceeEEEcCCC--CEEEE-----EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021 198 DIFSVGGDISDANVVKFSNDG--RLMLL-----TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 270 (332)
Q Consensus 198 ~~~~~~~~~~~v~~v~~s~dg--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs 270 (332)
.... ...+....+||.| ..++. .+...++++|.+..+..+.+...... .-..+-|.+.|.+|+.--
T Consensus 169 ~~lr----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~---~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 169 KNLR----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV---SGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred hhcc----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---cccEEEEecCCceEEEEE
Confidence 3222 2346677788864 33332 23456899999887776655443211 112466777777765431
Q ss_pred C-----------CCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021 271 G-----------DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 271 ~-----------Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
. +.+++|.+++... +.....-.++|...+|.|.++.|++.+
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred EEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEe
Confidence 1 3468888886433 333235567899999999998877755
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=0.00022 Score=61.33 Aligned_cols=216 Identities=13% Similarity=0.155 Sum_probs=127.9
Q ss_pred EEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEec-CCCCeEEEeeCCCcEEEEeCCCceEEEEEE
Q 020021 82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLLR 160 (332)
Q Consensus 82 ~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~-~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 160 (332)
.+|.+....+++... ..+.|..|+..+++... +... ...++.+. ++++. +.+..++. .++|+.+++......
T Consensus 5 p~~d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l-~v~~~~~~-~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDI--PGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRL-YVADSGGI-AVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEETTTTEEEEEET--TTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEE-EEEETTCE-EEEETTTTEEEEEEE
T ss_pred eEEECCCCEEEEEEc--CCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEE-EEEEcCce-EEEecCCCcEEEEee
Confidence 456664445555432 25678888888876432 2211 16677777 56544 44445444 555998887655554
Q ss_pred ec--C-----ceeEEEcCCCeEEEEEeC---------CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEE-EE
Q 020021 161 VQ--G-----RPAAAYDDQGLVFAVAFG---------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLM-LL 223 (332)
Q Consensus 161 ~~--~-----~~~~~~~~~~~~~~~~~~---------~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~~ 223 (332)
.. . .+..++++++.++.+... +.+..++.. . ...... ......+.++|+||++.+ ++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---~~~~~~--~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---KVTVVA--DGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S---EEEEEE--EEESSEEEEEEETTSSEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C---eEEEEe--cCcccccceEECCcchheeec
Confidence 41 1 124566777766655442 345555544 1 111111 112345889999999865 56
Q ss_pred EcCCCeEEEEEccCCeE-e---EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceE
Q 020021 224 TTMEGHIHVLDSFRGTL-L---STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVI 299 (332)
Q Consensus 224 ~~~dg~i~i~d~~~~~~-~---~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l 299 (332)
-+..+.|..+|+..... + ..+..........-.+++.++|+.+++.-..+.|.++|.. |+.+..+..-...++++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 78889999999863221 2 1121111111234568999999999888788999999986 88877665444578999
Q ss_pred Ee-CCC-eeEEEec
Q 020021 300 KW-TPG-SLMFVTG 311 (332)
Q Consensus 300 ~~-sp~-~~~l~t~ 311 (332)
+| .|+ ..+++|.
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99 466 4566654
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.64 E-value=3.1e-07 Score=86.19 Aligned_cols=124 Identities=21% Similarity=0.293 Sum_probs=93.9
Q ss_pred ceeEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe-eeEEeeecccceeEEEEccCCCEEEEecCCCCCcee
Q 020021 26 VGMSFRDYNGRISSMDFHKSS-SYLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg-~~l~tgs~D~tv~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
....+.||...|+.+.|.|+. ..++|++.|..+..||..+.. .+..+..-..+..-|.|+.-...+++.+. .+.+
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlassh---g~~i 182 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSH---GNDI 182 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhcc---CCce
Confidence 345589999999999999886 578999999999999987543 23333333334455666655555554442 4679
Q ss_pred EEEEccC-CceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCC
Q 020021 104 RLLSLHD-NKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 104 ~v~d~~~-~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~ 152 (332)
++||..- +.++.++++|...|..++|.. -...+.+.+.||++++||...
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 9999754 568899999999999999986 345789999999999999754
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=1.5e-05 Score=69.26 Aligned_cols=201 Identities=20% Similarity=0.250 Sum_probs=126.6
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEEcC-CCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-
Q 020021 27 GMSFRDYNGRISSMDFHKSSSYLVTASDD-----ESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW- 99 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~l~tgs~D-----~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~- 99 (332)
.+.|-||. .||+||++|.|.=.| |.|-|||+. +...+.++..+.-+.+.+.+.++++.++.+. +|.
T Consensus 49 gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI~ 121 (305)
T PF07433_consen 49 GRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN-GGIE 121 (305)
T ss_pred CCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc-CCCc
Confidence 34455554 699999999886554 799999998 7777888888877777888999998888874 232
Q ss_pred ---------------CceeEEEEccCCceEEE--e--ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEE
Q 020021 100 ---------------DESLRLLSLHDNKYLRY--F--KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 160 (332)
Q Consensus 100 ---------------d~~v~v~d~~~~~~~~~--~--~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~ 160 (332)
+.++-+.|..+|+.+.. + .-|+..|..+++.++|..++..-+.|.-. + .
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~--~---~------- 189 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG--D---A------- 189 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC--c---c-------
Confidence 34566667777776554 4 34778899999888876555544433210 0 0
Q ss_pred ecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEEccCCe
Q 020021 161 VQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGT 239 (332)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~~~ 239 (332)
...+..-..++.++..+........ -...+-+|+++++|..+++++- -+.+.+||..+++
T Consensus 190 -----------~PLva~~~~g~~~~~~~~p~~~~~~--------l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 190 -----------PPLVALHRRGGALRLLPAPEEQWRR--------LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred -----------CCeEEEEcCCCcceeccCChHHHHh--------hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 0011111112223333322111000 1134678999999988876664 5689999999999
Q ss_pred EeEEeeecCCCCCcceEEEECCCCCEEEEEcC
Q 020021 240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 271 (332)
Q Consensus 240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~ 271 (332)
++..... .-+..++-.+++ |++|.+.
T Consensus 251 ~~~~~~l-----~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 251 LLGSVPL-----PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred Eeecccc-----CceeeeeecCCc-eEEeCCC
Confidence 8865542 223345555666 6666654
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=3.2e-07 Score=79.05 Aligned_cols=153 Identities=20% Similarity=0.150 Sum_probs=100.8
Q ss_pred EEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc
Q 020021 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 215 (332)
Q Consensus 137 ~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s 215 (332)
++.+.+-.+-+-|.+++.......-..+-+..|.. +..++.+...|.|-.+|+|..+.+.......-.|.+.++++..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 55666677777777776533222111111112222 45677778899999999997654432222222355667766665
Q ss_pred C-CCCEEEEEcCCCeEEEEEccCCeE---eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec
Q 020021 216 N-DGRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM 290 (332)
Q Consensus 216 ~-dg~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~ 290 (332)
. ++.++++++.+|+|++||.+--+. +..++.+.... ...-+-..+....+++++.|...|||.+..+..+.++.
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~-a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS-AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccc-cccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 5 788999999999999999976555 66676432111 11223456788899999999999999999998877654
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.57 E-value=0.00014 Score=73.78 Aligned_cols=283 Identities=15% Similarity=0.231 Sum_probs=167.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEE----EcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
..+.|-++.|-++...++.+..+|.|.+. |..+. .+.....-..+|.+.+|+|+...++.... ++++.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEec
Confidence 45779999999999999999999999999 44432 22333445668999999999998877653 333333211
Q ss_pred ---------------cCCceE--------EEeec------------------------ccccEEEEEecCCCCeEEEeeC
Q 020021 109 ---------------HDNKYL--------RYFKG------------------------HHDRVVSLSLCSSKDCFISGSL 141 (332)
Q Consensus 109 ---------------~~~~~~--------~~~~~------------------------h~~~V~~v~~~~~~~~l~s~s~ 141 (332)
...+.+ .-|+| +.+.-..++|-.||.+||..+.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 100110 00111 2234456889999999987774
Q ss_pred ---C---CcEEEEeCCCceEEEEEEe-cC-ceeEEEcCCCeEEEEEeC----CEEEEEECccCCCCCeeEEEecCCCCCc
Q 020021 142 ---D---RTVLLWDQRAEKCQGLLRV-QG-RPAAAYDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDA 209 (332)
Q Consensus 142 ---D---g~i~iWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v 209 (332)
+ +.+|+|+- .+....+-.. .+ .....+.|.|.++++.-. ..|.+|.-.-.+.+.|... .......+
T Consensus 230 ~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~~~~~~~v 307 (928)
T PF04762_consen 230 EPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-FDPEEEKV 307 (928)
T ss_pred EcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-CCCCCcee
Confidence 2 57999984 4543332221 11 234567788888877742 3555554322222222221 11233568
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEEccCCeE--eEEeeecCCCCCcceEEEECCC-CCEEEEEcCCCcEEEEEC----CC
Q 020021 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVYAWSV----RS 282 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~v~~spd-g~~l~sgs~Dg~i~vWd~----~~ 282 (332)
..+.+++|+.+|+....|. |++|-....+- .+++.. ........+.|+|. -..|.....+|.+..+++ ..
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~--~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF--SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc--cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 8999999999999977554 99998776653 233332 22223334788884 344555555565654433 11
Q ss_pred C----------------ceE--EEe-------------cCCCCCCceEEeCCCeeEEEe--ccceEEEecccccc
Q 020021 283 G----------------KEV--ASW-------------MSFDTEPPVIKWTPGSLMFVT--GSSELSFWIPDLSK 324 (332)
Q Consensus 283 ~----------------~~~--~~~-------------~~~~~~v~~l~~sp~~~~l~t--~~~d~~~w~~~~~~ 324 (332)
+ ..+ ..+ ...+..|.+++|+++...++. ....+.+|.++...
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 1 110 001 134677899999998854433 44448888876543
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=2.4e-06 Score=82.16 Aligned_cols=181 Identities=15% Similarity=0.237 Sum_probs=127.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEE
Q 020021 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVS 126 (332)
Q Consensus 47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~ 126 (332)
..++-|+.-..+.-+|+.+.+..+...-...++..+ ..+++.++++.. .++|.+-|.++.+.++++..|++.|..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecc---cceEEeecCCcCceeeeeeccccceee
Confidence 445556666667777888777666555444444443 345566666654 578999999999999999999999987
Q ss_pred EEecCCCCeEEEeeC---------CCcEEEEeCCCceEEEEEEecCcee-EEEcC--CCeEEEEEeCCEEEEEECccCCC
Q 020021 127 LSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQGRPA-AAYDD--QGLVFAVAFGGYIRMFDARKYEK 194 (332)
Q Consensus 127 v~~~~~~~~l~s~s~---------Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~vwd~~~~~~ 194 (332)
++. .|+.|+|+|. |.=|++||++.-+.+.-++.+.-+. ..+.| ...++.++..|...+-|.....+
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 655 5899999985 5568999999877665555543332 23333 33455555678888888554444
Q ss_pred CCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021 195 GPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (332)
Q Consensus 195 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d 234 (332)
++..++......+.+....+|+.|..++.+..+|+|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4444444434445688899999999999999999999997
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.7e-06 Score=77.07 Aligned_cols=238 Identities=15% Similarity=0.156 Sum_probs=159.9
Q ss_pred CCEEEEecCCCCCceeEEEEccC---CceEEEeecccccEEEEEecCCCCeEEEeeC-CCcEEEEeCCCceEEEEEEec-
Q 020021 88 PTTVIYSSKNGWDESLRLLSLHD---NKYLRYFKGHHDRVVSLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQ- 162 (332)
Q Consensus 88 ~~~~~~~s~~g~d~~v~v~d~~~---~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~- 162 (332)
.+.++.++ .|+.++.|--.. -+.++.+..|...|.+++.+.++..+.|.+. |+.+|++|+..-.....+++.
T Consensus 20 a~fiiqAS---lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 20 AKFIIQAS---LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hheEEeee---cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc
Confidence 34555554 488899996433 3456677889999999999999999999888 999999998765544444443
Q ss_pred --CceeEEEcCCC--eEEEEE--eCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021 163 --GRPAAAYDDQG--LVFAVA--FGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (332)
Q Consensus 163 --~~~~~~~~~~~--~~~~~~--~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~ 236 (332)
+...+...++. ..++++ .++.+.++|-+..... . .+...-|.++|..+.+++-+..+++....|.|.-|...
T Consensus 97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-~-~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-D-GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-c-ceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 33344444432 233333 3588999986643211 1 12233466789999999999999999999999999876
Q ss_pred C------CeEeEEee------ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--------------
Q 020021 237 R------GTLLSTYN------VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM-------------- 290 (332)
Q Consensus 237 ~------~~~~~~~~------~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~-------------- 290 (332)
. .++.-.+. ..+-......++.|+|+|..+++-+.|..|++++..+++.+..+-
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y 254 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPY 254 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccc
Confidence 2 11110110 011123344578999999999999999999999999987543320
Q ss_pred ------------------CCCC-CCceEEeCCCeeEEEeccc-eEEEecccccccccccc
Q 020021 291 ------------------SFDT-EPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYVG 330 (332)
Q Consensus 291 ------------------~~~~-~v~~l~~sp~~~~l~t~~~-d~~~w~~~~~~~~~~~~ 330 (332)
.|.. .-+.+.|...+++|.-++. .+++...+..++--+.|
T Consensus 255 ~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 255 GLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred ccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence 1221 1244778888888888775 37777666655544444
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=3.6e-05 Score=65.17 Aligned_cols=190 Identities=13% Similarity=0.186 Sum_probs=103.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-------cceeEEEEccCCC------EEEEecCCCCCceeE
Q 020021 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK-------YGVDLVCFTSHPT------TVIYSSKNGWDESLR 104 (332)
Q Consensus 38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~------~~~~~s~~g~d~~v~ 104 (332)
.-++||||+.+||-+..-|+|+++|+.. ..+..+.... .+|..+.|.+... .++... +++.++
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~---Y~G~L~ 122 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN---YRGQLR 122 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe---ccceee
Confidence 4689999999999999999999999975 4444443321 2344455544321 122221 245566
Q ss_pred EEEccC-----CceEEEe--e-cccccEEEEEecCCCCeEEEeeCC-Cc----------EEEEeCCCceEEEEEEecCce
Q 020021 105 LLSLHD-----NKYLRYF--K-GHHDRVVSLSLCSSKDCFISGSLD-RT----------VLLWDQRAEKCQGLLRVQGRP 165 (332)
Q Consensus 105 v~d~~~-----~~~~~~~--~-~h~~~V~~v~~~~~~~~l~s~s~D-g~----------i~iWd~~~~~~~~~~~~~~~~ 165 (332)
-+-+.. .+...++ . .+...|.++.++|..+.|+-||.. .. +..|.+-++.+ ...
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-------yyk 195 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-------YYK 195 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC-------cEE
Confidence 555422 1122222 2 346789999999988876655542 22 12222111110 000
Q ss_pred eEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEe-cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe
Q 020021 166 AAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 244 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~ 244 (332)
.+...++.........+..++..+ ..+.. ......+..+..||||+.+++...+|.|.+|++.+-.++..+
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~--------~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSF--------KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred EccccCccccccccccceeeccce--------eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 000000000000001111222111 11211 112346788999999999999999999999999877766655
Q ss_pred ee
Q 020021 245 NV 246 (332)
Q Consensus 245 ~~ 246 (332)
..
T Consensus 268 ~~ 269 (282)
T PF15492_consen 268 KQ 269 (282)
T ss_pred ch
Confidence 43
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.46 E-value=0.00028 Score=65.21 Aligned_cols=229 Identities=13% Similarity=0.081 Sum_probs=130.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~ 125 (332)
+..+..++.++.+..+|.++|+.+-...........-.. .+..++.... ++.+..+|.++|+.+..+........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence 446667788999999999999987655433211111011 1334555443 67899999999998776653211110
Q ss_pred E-EEecC--CCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc------------eeEEEcCCCeEEEEEeCCEEEEEECc
Q 020021 126 S-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR------------PAAAYDDQGLVFAVAFGGYIRMFDAR 190 (332)
Q Consensus 126 ~-v~~~~--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~vwd~~ 190 (332)
. ..-+| .+..++.++.++.+...|.++++..-....... .....-.++.++.++.++.+..+|..
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0 00111 134566677888888888887765443322110 00000124566667778899988886
Q ss_pred cCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021 191 KYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 270 (332)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs 270 (332)
+.+. .+... ....... ..++..+..++.+|.++.+|..+|+.+=..... .......... .+.+|+.++
T Consensus 275 tG~~----~W~~~--~~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 275 SGQI----VWKRE--YGSVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred CCCE----EEeec--CCCccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccCCEE--ECCEEEEEe
Confidence 5431 12111 0111111 124556667778999999999988764222110 0011111111 356777889
Q ss_pred CCCcEEEEECCCCceEEEecC
Q 020021 271 GDGSVYAWSVRSGKEVASWMS 291 (332)
Q Consensus 271 ~Dg~i~vWd~~~~~~~~~~~~ 291 (332)
.||.+++.|..+|+.+.....
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEc
Confidence 999999999999998776543
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=6.9e-05 Score=68.72 Aligned_cols=221 Identities=14% Similarity=0.199 Sum_probs=141.9
Q ss_pred eeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC-----------CcEEE
Q 020021 79 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD-----------RTVLL 147 (332)
Q Consensus 79 v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D-----------g~i~i 147 (332)
-+-+.|+|.|+++++--. .-|.+|--++-..++.+. | -.|.-++|||..++|+|-|.- ..+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk----~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK----QGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEec----cceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 456889999999887643 337888655543333332 3 357889999999999998742 47899
Q ss_pred EeCCCceEEEEEEec--C---ceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEE
Q 020021 148 WDQRAEKCQGLLRVQ--G---RPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLML 222 (332)
Q Consensus 148 Wd~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 222 (332)
||++++.....+... . -+...++.++.+++.-..+.|.+++..++.. ++. -....+.+....+||.+.+||
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~l--ld~--Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFML--LDK--KSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceee--ecc--cccCCccccCcccCCCcceEE
Confidence 999999887777552 1 2456777888998888888999998754321 110 112335677888999998887
Q ss_pred EEcCC-----CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE----------cCCCcEEEEECCCCceEE
Q 020021 223 LTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG----------SGDGSVYAWSVRSGKEVA 287 (332)
Q Consensus 223 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg----------s~Dg~i~vWd~~~~~~~~ 287 (332)
-=+.. -++.+..+.+++.+++.++.. -.-..+-|-.+|.||+-- +.=..+-|+.+.......
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfn---VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKNLFN---VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeecccee---eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 54432 256677777766665544322 112234566677776532 222245566665544332
Q ss_pred EecCCCCCCceEEeCCCeeEEEecc
Q 020021 288 SWMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 288 ~~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
.-......+...+|-|.|..+++-+
T Consensus 440 e~velke~vi~FaWEP~gdkF~vi~ 464 (698)
T KOG2314|consen 440 EVVELKESVIAFAWEPHGDKFAVIS 464 (698)
T ss_pred eeeecchheeeeeeccCCCeEEEEE
Confidence 2233456678899999987776643
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=5.1e-05 Score=71.58 Aligned_cols=244 Identities=13% Similarity=0.223 Sum_probs=149.6
Q ss_pred ccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee--ecccceeEEEEccCCCEEEEecCCCCCc
Q 020021 24 MEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 24 ~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
+..-++|.||++.|.-+.|+.+...|-|...+|-|.+|-+-.|.=..... .....|.+.+|..+|..+...-. |+
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe---DG 137 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE---DG 137 (1189)
T ss_pred cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc---cC
Confidence 44557899999999999999988999999999999999987654332221 12344777899999988765543 55
Q ss_pred eeEEEEccCCce-EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-------EEEEEEe-----cCc----
Q 020021 102 SLRLLSLHDNKY-LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-------CQGLLRV-----QGR---- 164 (332)
Q Consensus 102 ~v~v~d~~~~~~-~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-------~~~~~~~-----~~~---- 164 (332)
.|.|=.+..+.. -+.++|.. ...+.|++|.+.+.-+=..|.+.++|...+- |.-.... +.+
T Consensus 138 avIVGsvdGNRIwgKeLkg~~--l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 138 AVIVGSVDGNRIWGKELKGQL--LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred CEEEEeeccceecchhcchhe--ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence 566555543221 12233322 2468899999988888888999999965331 1111100 000
Q ss_pred -----eeEEEcCCCeEEEEEe-CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCC---------e
Q 020021 165 -----PAAAYDDQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---------H 229 (332)
Q Consensus 165 -----~~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg---------~ 229 (332)
+.....|+.-.+++++ .|.+.+.--.+... |. ++.. + -.+..+.++++|..+++++.+. .
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-Pv-v~dt-g--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~ 290 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-PV-VVDT-G--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK 290 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-Ce-EEec-c--cEeecceecCCCcEEEEccCcccccCccccce
Confidence 0111123444556665 46666653322211 11 1111 1 2456678999999999988653 4
Q ss_pred EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
|+.+.. -|+.+.++. .+..+++.++|-..|-.+|-+ .|+.|++=+++.
T Consensus 291 v~Fysp-~G~i~gtlk---vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 291 VHFYSP-YGHIVGTLK---VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred EEEecc-chhheEEEe---cCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 555543 366666665 345677778887666666655 467676665543
No 304
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.33 E-value=1.4e-05 Score=67.70 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=87.9
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEcc-CCceE
Q 020021 38 SSMDFHKSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYL 114 (332)
Q Consensus 38 ~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~-~~~~~ 114 (332)
.++.|++.+..++++-.+|.+.+-+...... .++++.|+.....+.|+.....+++.. |-|+.+.-||+. .++++
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytG--gDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG--GDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEec--CCCceEEEEEecCCccee
Confidence 4678888899999999999988444433333 347889999999899988777666653 458999999997 34454
Q ss_pred EE-eecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCC
Q 020021 115 RY-FKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 115 ~~-~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~ 152 (332)
.. -+-|+..|.++.-+| .+..++||+.|-.|++||.+.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 44 567899999998776 577999999999999999873
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.31 E-value=0.00093 Score=61.78 Aligned_cols=228 Identities=14% Similarity=0.082 Sum_probs=130.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc-ce-e-----EEE--EccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY-GV-D-----LVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~-~v-~-----~~~--~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~ 116 (332)
+..+..++.++.+.-+|..+|+.+-....... .. . .+. ..-.+..++.+.. ++.+..+|.++|+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCccc
Confidence 56888888899999999999998755433210 00 0 000 0112345555542 67899999999988776
Q ss_pred eecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-------eeEEEcCCCeEEEEEeCCEEEEEEC
Q 020021 117 FKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGLVFAVAFGGYIRMFDA 189 (332)
Q Consensus 117 ~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~vwd~ 189 (332)
..-.. .+.+--.- .+..++.+..++.+...|.++++..-....... ..... ..+.++....++.+..+|.
T Consensus 146 ~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEc
Confidence 55332 22221111 245666677889999999999887655543211 01111 1345565666788887776
Q ss_pred ccCCCCCeeEEEecCCCC-----CceeEEEcC--CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 190 RKYEKGPFDIFSVGGDIS-----DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-----~v~~v~~s~--dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
.+.+..- ......... ....+..+| .+..+..++.+|.++.+|..+|+.+=..... . ..... .+
T Consensus 223 ~~G~~~W--~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~---~~~~~--~~ 293 (394)
T PRK11138 223 EQGQLIW--QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--S---VNDFA--VD 293 (394)
T ss_pred cCChhhh--eeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--C---ccCcE--EE
Confidence 5432110 000000000 000011122 2344556667899999999999865332211 1 11111 25
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEE
Q 020021 263 GMFVISGSGDGSVYAWSVRSGKEVAS 288 (332)
Q Consensus 263 g~~l~sgs~Dg~i~vWd~~~~~~~~~ 288 (332)
+..++.++.||.++.+|..+++.+..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 66777788999999999999987654
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.28 E-value=7.9e-06 Score=69.75 Aligned_cols=214 Identities=19% Similarity=0.319 Sum_probs=130.3
Q ss_pred CcEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCee-------------------------------------e-----E
Q 020021 35 GRISSMDFHKSS--SYLVTASDDESIRLYDVTAATC-------------------------------------L-----K 70 (332)
Q Consensus 35 ~~I~~i~~s~dg--~~l~tgs~D~tv~iwd~~~~~~-------------------------------------~-----~ 70 (332)
..|..|.|-.++ +.++-...|++|++|.+...+. + +
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 457788886544 4577788999999998643210 0 0
Q ss_pred Ee-eecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC--c-eEEEeecc-----cccEEEEEecCC-CCeEEEee
Q 020021 71 TI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--K-YLRYFKGH-----HDRVVSLSLCSS-KDCFISGS 140 (332)
Q Consensus 71 ~~-~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~--~-~~~~~~~h-----~~~V~~v~~~~~-~~~l~s~s 140 (332)
.+ ..|...+.+++|..+...++++- |-.|.+|+++-. . .+..++.| +.-|++..|+|. ...|...+
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaD----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSAD----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred eccccceeEeeeeeecCchheeeecc----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 11 24455566777887777776553 667889987542 2 13334444 345888899984 56788888
Q ss_pred CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCE
Q 020021 141 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRL 220 (332)
Q Consensus 141 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 220 (332)
..|+|++-|++....- +.+..++....|+ ....-..+-...+..+.||+.|++
T Consensus 242 SkG~Ikl~DlRq~alc-------------dn~~klfe~~~D~--------------v~~~ff~eivsSISD~kFs~ngry 294 (460)
T COG5170 242 SKGEIKLNDLRQSALC-------------DNSKKLFELTIDG--------------VDVDFFEEIVSSISDFKFSDNGRY 294 (460)
T ss_pred CCCcEEehhhhhhhhc-------------cCchhhhhhccCc--------------ccchhHHHHhhhhcceEEcCCCcE
Confidence 8999999998754210 0000011000000 000000112245778899999999
Q ss_pred EEEEcCCCeEEEEEccCCe-EeEEeeecCC---------CCCcc---eEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 221 MLLTTMEGHIHVLDSFRGT-LLSTYNVKPV---------SRNST---LEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 221 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~---------~~~~~---~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
+++.+.. +++|||....+ ++.+...+.. ....+ ..+.||-|...+++||.....-++-.
T Consensus 295 IlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 295 ILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 9887554 89999986532 3333321100 11222 35889999999999999888888864
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=9.1e-06 Score=67.71 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=67.6
Q ss_pred ceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee-eEEeeecccceeEEEEccCCCEEEEecCCCC--Cce
Q 020021 26 VGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DES 102 (332)
Q Consensus 26 ~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--d~~ 102 (332)
..++|.-|+++=.+=+.+--++.++++..|+.+-+.+.+.-.. .+.+..-...-...+.-.+++.+.+..-+-+ -.+
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 3344555665554444555578899999999999998864211 1112111111111222233333332211000 123
Q ss_pred eEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEeCCCc
Q 020021 103 LRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWDQRAE 153 (332)
Q Consensus 103 v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~ 153 (332)
.+.|++...+.+..-..-.+.|.+++-+| +...++.|+.||.+-+||++..
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~ 212 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV 212 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc
Confidence 45555543322211122233488888888 4557778888999999998754
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=0.00012 Score=69.66 Aligned_cols=240 Identities=14% Similarity=0.174 Sum_probs=153.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCC----------EEEEecCCCCCceeEEE
Q 020021 37 ISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT----------TVIYSSKNGWDESLRLL 106 (332)
Q Consensus 37 I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~s~~g~d~~v~v~ 106 (332)
-.++.|+|.| ++|=|+.. .|-+-|..+.+.++.++-|+..|..+.|.|-+- .++.++ +...+.|.+|
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs-aD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS-ADISGRIILV 94 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe-ccccCcEEEE
Confidence 6688999977 77767654 467779999999999999999999999876332 223333 2346889999
Q ss_pred EccCCceEEEeecccccEEEEEecC---CC-CeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcC--CCeEEEE
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD--QGLVFAV 178 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~---~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~ 178 (332)
|...+..+..+..|.++|..++|-+ +. ..|+.-..-.++.+|+..++...-.......+ +..++| ...+...
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 9999988899999999999999874 33 35555566779999998888755433332222 122222 2233334
Q ss_pred EeCCEEEEEECccCC--CCCeeEEEecCC--------------------CCC------ceeEEEcCCCCEEEEEcCCCeE
Q 020021 179 AFGGYIRMFDARKYE--KGPFDIFSVGGD--------------------ISD------ANVVKFSNDGRLMLLTTMEGHI 230 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~--~~~~~~~~~~~~--------------------~~~------v~~v~~s~dg~~l~~~~~dg~i 230 (332)
+..|.+-+-+..-.. ..+.+.+....+ ... .-..+|+|.-+-++.......+
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel 254 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL 254 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence 445554444322111 001111100000 000 1124678888888888888899
Q ss_pred EEEEccCCeEeEEeeecCCCCCcceEEEECCCC--CEEEEEcCCCcEEEEECCC
Q 020021 231 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--MFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 231 ~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg--~~l~sgs~Dg~i~vWd~~~ 282 (332)
.++|+.-.+.+.... ..++.+--+.+-||+ ..|++.-.||.+.+|-.+.
T Consensus 255 lv~dle~~~~l~vvp---ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 255 LVFDLEYECCLAVVP---IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEcchhhceeEEEE---eccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 999987766665544 333433345555654 6899999999999996543
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.26 E-value=6.8e-06 Score=68.44 Aligned_cols=94 Identities=12% Similarity=0.200 Sum_probs=68.9
Q ss_pred cEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce-EEEeecccccEEEEEecC-CCC
Q 020021 57 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDRVVSLSLCS-SKD 134 (332)
Q Consensus 57 tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~~~h~~~V~~v~~~~-~~~ 134 (332)
..++|++...+.+-.-......|+.+|-+|....++.+.. -|+.+-+||+.+... ...++.|+++|+.+.|+| ++.
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 3456665433222111112234888999998888777643 388999999987654 456789999999999999 678
Q ss_pred eEEEeeCCCcEEEEeCCC
Q 020021 135 CFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 135 ~l~s~s~Dg~i~iWd~~~ 152 (332)
.|.+++.||.+-.||.++
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 999999999999999764
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.22 E-value=0.0033 Score=55.58 Aligned_cols=247 Identities=14% Similarity=0.156 Sum_probs=143.0
Q ss_pred EEEECCCCCEEEEEeC----------CCcEEEEEcCCCeeeEEeeec---ccc----eeEEEEccCCCEEEEecCCCCCc
Q 020021 39 SMDFHKSSSYLVTASD----------DESIRLYDVTAATCLKTINSK---KYG----VDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 39 ~i~~s~dg~~l~tgs~----------D~tv~iwd~~~~~~~~~~~~~---~~~----v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
.+.+|||++.+.+++. .--|.+||..+......+.-. ... .....++.+++.++..... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-PAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES-SSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC-CCC
Confidence 3567899998877552 235889999998887755322 111 2346778888877664321 245
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC-CceEEEEEEe---c-Cce---eEEE-cCC
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRV---Q-GRP---AAAY-DDQ 172 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~~~---~-~~~---~~~~-~~~ 172 (332)
+|-|-|++.++.+..+.-- + +..+ +-..++.|.+-|.||++.-..+. .++....... . ..+ ...+ ...
T Consensus 119 SVtVVDl~~~kvv~ei~~P-G-C~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP-G-CWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT-S-EEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecCC-C-EEEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 7889999888877655421 1 1111 11123578899999998888776 4444311110 0 000 1122 234
Q ss_pred CeEEEEEeCCEEEEEECccCCCCCeeEEEecC--------CCCCceeEEEcCCC-CEEEEE--cCCC-------eEEEEE
Q 020021 173 GLVFAVAFGGYIRMFDARKYEKGPFDIFSVGG--------DISDANVVKFSNDG-RLMLLT--TMEG-------HIHVLD 234 (332)
Q Consensus 173 ~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~--------~~~~v~~v~~s~dg-~~l~~~--~~dg-------~i~i~d 234 (332)
+.++..++.|.|+-.|+..........+++.. .+..-..+++++.. ++++.. +.++ .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 45666788888888777543321112222110 01234567887644 444432 2222 499999
Q ss_pred ccCCeEeEEeeecCCCCCcceEEEECCCCC-EEEEE-cCCCcEEEEECCCCceEEEecCCC
Q 020021 235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVYAWSVRSGKEVASWMSFD 293 (332)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~spdg~-~l~sg-s~Dg~i~vWd~~~~~~~~~~~~~~ 293 (332)
+.+++.+.++.+. ..+.++..|.|.+ +|++. ..++.+.|||..+++.++++....
T Consensus 276 ~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 276 LKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 9999999888753 3455788888876 55444 457999999999999998876544
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.0014 Score=62.88 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=91.0
Q ss_pred cccceeEeccCCCcEEEEEECCCC------------CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCC--
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSS------------SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP-- 88 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg------------~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-- 88 (332)
++++++++.-|+..|+.|.|.|.. -+||++.-.|.|.+||+..+..+..+..+..++..+||.+..
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 466777888899999999998642 256777778999999999988888888888888888887633
Q ss_pred -CEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecC-CCCeEEEeeCCCcEEEEe
Q 020021 89 -TTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCS-SKDCFISGSLDRTVLLWD 149 (332)
Q Consensus 89 -~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~-~~~~l~s~s~Dg~i~iWd 149 (332)
+.++.+-. | .+++.+|+..+|+.+....--.....++.+.| |.+.|.--+..|-+.+-+
T Consensus 124 Srd~LlaIh-~-ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 124 SRDVLLAIH-G-SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred chheeEEec-C-CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence 23333322 2 46899999999988777665555566677777 666665555556655554
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=1.8e-05 Score=68.49 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=98.9
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC-----ceEEEeecccccE
Q 020021 50 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-----KYLRYFKGHHDRV 124 (332)
Q Consensus 50 ~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~-----~~~~~~~~h~~~V 124 (332)
++.|.+-.+-+-|+++|.... +. ....|...-|...++.++.+.. ++.|.+.|+..+ .+...+ -|...|
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRL-YHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence 778888888998998875432 22 2233555566666666776665 567999998654 233333 388899
Q ss_pred EEEEecC-CCCeEEEeeCCCcEEEEeCCCceEEE---EEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEE
Q 020021 125 VSLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIF 200 (332)
Q Consensus 125 ~~v~~~~-~~~~l~s~s~Dg~i~iWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~ 200 (332)
+++..-. ++..|++.+++|+|++||.+.-+|.. ....+...
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~----------------------------------- 346 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL----------------------------------- 346 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc-----------------------------------
Confidence 9988766 67889999999999999998776622 11111000
Q ss_pred EecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee
Q 020021 201 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 245 (332)
Q Consensus 201 ~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~ 245 (332)
..-.-+.+.+....+++++.|-..+||.++.|+++.++.
T Consensus 347 ------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 347 ------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ------ccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 001112344555667778888888899988888887654
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0004 Score=67.02 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=121.1
Q ss_pred EecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce--eEEEcCC--CeEEEEEeCC-----EEEEEECccCCC-C-C
Q 020021 128 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQ--GLVFAVAFGG-----YIRMFDARKYEK-G-P 196 (332)
Q Consensus 128 ~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~-----~i~vwd~~~~~~-~-~ 196 (332)
++++.+..+|-|+.||.|.+.+-+ -+...-++..... ...+..+ ..+++++.|+ .+++||+...+. . |
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 456788899999999999887632 2222233221111 1122222 3566666552 689999876522 1 2
Q ss_pred eeE-----EEec--CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC-eEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021 197 FDI-----FSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (332)
Q Consensus 197 ~~~-----~~~~--~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~v~~spdg~~l~s 268 (332)
..+ +... ....++.++++|.+-..+|+|-.+|.|..+.-+-- ..-...........+++.++|-.|+.-++=
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1211 12457889999999999999999999998763210 000011111234568889999888876222
Q ss_pred EcCCCcEEEEECCCCce-EEEecCCCCCCceEEeCCCeeEE-EeccceEEEecccccc
Q 020021 269 GSGDGSVYAWSVRSGKE-VASWMSFDTEPPVIKWTPGSLMF-VTGSSELSFWIPDLSK 324 (332)
Q Consensus 269 gs~Dg~i~vWd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l-~t~~~d~~~w~~~~~~ 324 (332)
+..-..|.++.+....+ ...+..|....+|-+|++....| +++++-+.+++.+..+
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG 246 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence 23345699999974442 34466777888999999977645 4455559999876543
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.12 E-value=0.00015 Score=67.22 Aligned_cols=73 Identities=27% Similarity=0.457 Sum_probs=58.0
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc--eEEEeccccccc
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS--ELSFWIPDLSKL 325 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~--d~~~w~~~~~~~ 325 (332)
...+.+++++|+...++.|..||+|.+||...+ +..+....-.++.++|||+|..++.|+. ++++||..+..+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 356778999999999999999999999998664 3334444456789999999999988876 488888765543
No 315
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.10 E-value=0.0047 Score=56.20 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCCCCEEEEE---------eCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCce
Q 020021 43 HKSSSYLVTA---------SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY 113 (332)
Q Consensus 43 s~dg~~l~tg---------s~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~ 113 (332)
|||+++++.. +..+.+-|||+++++....... ...+....|+|++..+++.. ++.+.+.++.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence 5788777653 2346789999998766543333 44577789999999998885 57899998877754
Q ss_pred EEE-eecc----------------cccEEEEEecCCCCeEEEeeCC
Q 020021 114 LRY-FKGH----------------HDRVVSLSLCSSKDCFISGSLD 142 (332)
Q Consensus 114 ~~~-~~~h----------------~~~V~~v~~~~~~~~l~s~s~D 142 (332)
.+. ..|- .+.-.++-||||+++|+..-.|
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 432 2220 1112457799999999888654
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.10 E-value=0.0036 Score=59.71 Aligned_cols=172 Identities=11% Similarity=0.097 Sum_probs=98.6
Q ss_pred CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC----cEEEEeCCCceEEEEEEecCceeEEEcCCCeE
Q 020021 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV 175 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (332)
.+.+.+.|.++.+....+.-- ..-..++++++|+++.+.+.+. ++..-+.........+.... ...+.+++..
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~ 290 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKF 290 (635)
T ss_pred eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCE
Confidence 456667777766554443321 1334567888888887776422 23332222211111111111 0111233443
Q ss_pred EEEEeCCEEEEEECccCC---CCCeeEEEecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeE-----------
Q 020021 176 FAVAFGGYIRMFDARKYE---KGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTL----------- 240 (332)
Q Consensus 176 ~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~----------- 240 (332)
... .++.|.+.|.++.. ......+.++ .....+.+||||++++++ ..+.++.++|..+.+.
T Consensus 291 ~~V-~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 291 KTI-GGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred EEE-CCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 333 36789999987610 1112222222 234678999999987765 5689999999977442
Q ss_pred -eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 241 -LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 241 -~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
..+... .....-.+|.++|+-+.|--.|..|-.||+.+
T Consensus 367 vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 222221 11223478999999888889999999999976
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.08 E-value=0.0086 Score=57.02 Aligned_cols=234 Identities=15% Similarity=0.186 Sum_probs=131.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeEEeeecccc-----ee-EEEEccCCCEEEEecCC------CCCceeEEEEccCCceE
Q 020021 47 SYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VD-LVCFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYL 114 (332)
Q Consensus 47 ~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~~~~~s~~------g~d~~v~v~d~~~~~~~ 114 (332)
..++.++.|+.|.-+|.++|+.+-.+...... +. ...+. +..++.++.. +.++.+..+|.++|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57777889999999999999988665433210 11 01111 2334444321 23578888999999987
Q ss_pred EEeecccc--------------------cEE-EEEecCCCCeEEEeeCCC------------------cEEEEeCCCceE
Q 020021 115 RYFKGHHD--------------------RVV-SLSLCSSKDCFISGSLDR------------------TVLLWDQRAEKC 155 (332)
Q Consensus 115 ~~~~~h~~--------------------~V~-~v~~~~~~~~l~s~s~Dg------------------~i~iWd~~~~~~ 155 (332)
..+..... .|. ...+.+.+.+++.++.|+ .+...|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 76653211 011 123333456677676554 788889998887
Q ss_pred EEEEEecCce--------e-EEEc---CCC----eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021 156 QGLLRVQGRP--------A-AAYD---DQG----LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219 (332)
Q Consensus 156 ~~~~~~~~~~--------~-~~~~---~~~----~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 219 (332)
.-.++..... . .... -++ .++.+..+|.+...|.++.+. +-..... ...++.+| +.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--~W~~~~~-----~~~~~~~~-~~ 340 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--ISARPEV-----EQPMAYDP-GL 340 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE--eeEeEee-----ccccccCC-ce
Confidence 7665432110 0 1110 112 244455678898888876532 1111110 01123333 33
Q ss_pred EEEE-----------------EcCCCeEEEEEccCCeEeEEeeecCCC-C----CcceEEEECCCCCEEEEEcCCCcEEE
Q 020021 220 LMLL-----------------TTMEGHIHVLDSFRGTLLSTYNVKPVS-R----NSTLEASFSPEGMFVISGSGDGSVYA 277 (332)
Q Consensus 220 ~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~-~----~~~~~v~~spdg~~l~sgs~Dg~i~v 277 (332)
+++. ...+|.+..+|+.+|+.+=+....... . .+...-.....+..|+.++.||.++.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 3332 124678889999888866333321000 0 01100011126678899999999999
Q ss_pred EECCCCceEEEec
Q 020021 278 WSVRSGKEVASWM 290 (332)
Q Consensus 278 Wd~~~~~~~~~~~ 290 (332)
+|..+|+.+....
T Consensus 421 ld~~tG~~lW~~~ 433 (488)
T cd00216 421 FDATTGKELWKFR 433 (488)
T ss_pred EECCCCceeeEEE
Confidence 9999999887754
No 318
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.02 E-value=1.5e-05 Score=45.96 Aligned_cols=38 Identities=34% Similarity=0.639 Sum_probs=34.6
Q ss_pred cceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 020021 25 EVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYD 62 (332)
Q Consensus 25 ~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd 62 (332)
+..+.+.+|...|.++.|++++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00036 Score=61.76 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=70.3
Q ss_pred eeEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEE
Q 020021 27 GMSFRDYNGRISSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 105 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v 105 (332)
...+.+|...|..++|||..+ ++..++.+.+|+|.|+++..+...+..+ ..+.++||..+....+++.. .++.|.+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl--~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL--QNGMVLV 262 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec--cCceEEE
Confidence 336788999999999999887 7888999999999999999999888887 57899999998887777643 3678999
Q ss_pred EEccCCc
Q 020021 106 LSLHDNK 112 (332)
Q Consensus 106 ~d~~~~~ 112 (332)
+|+...+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9997644
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.01 E-value=0.0056 Score=58.49 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=104.6
Q ss_pred ecCCCCeEE-EeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCCCeEEEEE-e----CCEEEEEECccCCCCCeeEEE
Q 020021 129 LCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFAVA-F----GGYIRMFDARKYEKGPFDIFS 201 (332)
Q Consensus 129 ~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~~~i~vwd~~~~~~~~~~~~~ 201 (332)
+.+||+.+. +.-..+.+.+.|.++.+....+.....+ ...+++++..+.+. + +.++...+.... .....+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--DWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC--ceEEEEc
Confidence 455676543 3334566777787776666666555443 34555555544433 2 133444433211 1111111
Q ss_pred ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC-----CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC-CCcE
Q 020021 202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSV 275 (332)
Q Consensus 202 ~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-Dg~i 275 (332)
.. ...++.++|++... .+++|.++|..+ .+.+..+.. ......+++||||++++.++. +.++
T Consensus 278 i~------~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 278 IA------RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred hH------HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECCCCCEEEEeCCCCCcE
Confidence 10 01134567877665 367899999987 344443321 234457899999998887754 8899
Q ss_pred EEEECCCCce------------EEEecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021 276 YAWSVRSGKE------------VASWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 276 ~vWd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~ 322 (332)
.|.|+.+.+. +... .......+.+|.++|+...|-.-| +--|+.+.
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9999987552 2222 224456789999999877775444 66677654
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.98 E-value=0.0032 Score=63.27 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=127.5
Q ss_pred ceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE
Q 020021 78 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 157 (332)
Q Consensus 78 ~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~ 157 (332)
.|..+.|..++..+..+.. .+.|.+.|.++.. +.....-.+.|.+++|+||...++-...++++.+-+-. =.++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITA---LGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEec---CCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 5666777777777666654 4567777776643 33334456789999999999999988888887764321 00111
Q ss_pred EEEecCceeEEEcCCCeEEEEEeCC---EEEEEECccCCCCCeeEEEecC---CCCCceeEEEcCCCCEEEEE-----cC
Q 020021 158 LLRVQGRPAAAYDDQGLVFAVAFGG---YIRMFDARKYEKGPFDIFSVGG---DISDANVVKFSNDGRLMLLT-----TM 226 (332)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~---~i~vwd~~~~~~~~~~~~~~~~---~~~~v~~v~~s~dg~~l~~~-----~~ 226 (332)
...+ .+...+.+..+.++.+. ..+.=--|.....+...-...+ ....-..|++--||.++++. ..
T Consensus 145 E~~L----~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 145 EKPL----DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cccc----ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 1111 00111223344444432 1111000000000000000000 11233568899999999883 23
Q ss_pred CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE---cCCCcEEEEECCCCceEEE----ecCCCCCCceE
Q 020021 227 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVYAWSVRSGKEVAS----WMSFDTEPPVI 299 (332)
Q Consensus 227 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg---s~Dg~i~vWd~~~~~~~~~----~~~~~~~v~~l 299 (332)
.+.|++||.. |.+-..-+. ..+.-..++|-|.|..+|+- +.|..|.++.- +|..-.. +.....++..|
T Consensus 221 ~RkirV~drE-g~Lns~se~---~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEP---VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred ceeEEEeccc-chhhcccCc---ccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhee
Confidence 3799999976 544322111 11122368999999999987 44667999975 4443222 23334458999
Q ss_pred EeCCCeeEEEecc----ce-EEEec
Q 020021 300 KWTPGSLMFVTGS----SE-LSFWI 319 (332)
Q Consensus 300 ~~sp~~~~l~t~~----~d-~~~w~ 319 (332)
+|+.++..|+..- .+ +++|.
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEE
Confidence 9999998887722 23 78874
No 322
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.015 Score=53.98 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=99.6
Q ss_pred eeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec------CceeE-----EEc
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ------GRPAA-----AYD 170 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~------~~~~~-----~~~ 170 (332)
.|++|+.. |+.+..+.--.+.|.++.|.. ...|+....||+++++|+.... .+.+. ....+ .+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC-CCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccC
Confidence 47777763 344444433338999999987 4567778899999999986443 12111 11111 111
Q ss_pred CCCeEEEEEeCCEEEEEE-CccCCC-CCe-eEEE----ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEE
Q 020021 171 DQGLVFAVAFGGYIRMFD-ARKYEK-GPF-DIFS----VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST 243 (332)
Q Consensus 171 ~~~~~~~~~~~~~i~vwd-~~~~~~-~~~-~~~~----~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~ 243 (332)
..|.++ ...++.+.+.. ...... ..+ .... ............++.+....+....++.+++.+....+.
T Consensus 137 ~~Givv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 137 KNGIVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CCCEEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 233333 23333333322 111000 000 0000 000111111134555666666666666777555332211
Q ss_pred eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC-CCCCceEEeCCC
Q 020021 244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF-DTEPPVIKWTPG 304 (332)
Q Consensus 244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~-~~~v~~l~~sp~ 304 (332)
. ...+++..++.||+|+++|.-..+|.+.|.+..-.+.+..+... ...+..+.|--+
T Consensus 213 i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 213 I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 1 12356788999999999999999999999986555555444332 234556666444
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=7e-06 Score=78.92 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=125.3
Q ss_pred EEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcC--CC-eEEEEE-eCC-EEEEEE
Q 020021 114 LRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD--QG-LVFAVA-FGG-YIRMFD 188 (332)
Q Consensus 114 ~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~-~i~vwd 188 (332)
.++++.|+..-++++|+.+.++|+-|+..|.|++++..++........++.+.....| ++ ..++.+ +.. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4567889999999999999999999999999999999988776665555444333322 33 344433 333 467888
Q ss_pred CccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC-CCCCcceEEEECCCCCEEE
Q 020021 189 ARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVI 267 (332)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~ 267 (332)
+...- ++.+.+ ..-.++.||..-..-+.|+......+||..++..+.++-... .....-..+.|||+...++
T Consensus 1174 ~~s~~-~~~Hsf------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1174 ASSTG-GPRHSF------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccc-Cccccc------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 76421 111111 234567888765555667666788999999998877642211 1112223568999999988
Q ss_pred EEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 268 SGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 268 sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.|| -+||++..+.++.|-.++-. -.=.|+|.|..++.-+.
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech
Confidence 566 37999888777766444311 11238999999988765
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00081 Score=64.51 Aligned_cols=175 Identities=11% Similarity=0.152 Sum_probs=106.6
Q ss_pred CCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee
Q 020021 87 HPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 166 (332)
Q Consensus 87 ~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~ 166 (332)
++..++.+.. ++.+.+.+..... .+...|... .-+|.+++|||.||+|.|-.+-+.+.
T Consensus 48 ~~~~~~~GtH---~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~----------- 105 (846)
T KOG2066|consen 48 HDKFFALGTH---RGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE----------- 105 (846)
T ss_pred hcceeeeccc---cceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-----------
Confidence 4456666654 5567777754422 333334332 34688999999999988865433221
Q ss_pred EEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-----CCEEEEEcCCCeEEEEEccCCeEe
Q 020021 167 AAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-----GRLMLLTTMEGHIHVLDSFRGTLL 241 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-----g~~l~~~~~dg~i~i~d~~~~~~~ 241 (332)
+..+|.. -++.+++++|| .+.+++|+..| +.++.-.=-...
T Consensus 106 -----------------~~~~df~----------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 106 -----------------ITQYDFK----------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred -----------------ceeEecC----------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 1112211 23567788887 36688888888 666542110001
Q ss_pred EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCC------CCceEEeCCCeeEEEeccceE
Q 020021 242 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDT------EPPVIKWTPGSLMFVTGSSEL 315 (332)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~------~v~~l~~sp~~~~l~t~~~d~ 315 (332)
..... ....+++.++.| -|.++|=++.+| |+|+|+.+++.+..+..... ...++.|.++.++++-=+..+
T Consensus 152 ~~v~l-~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v 227 (846)
T KOG2066|consen 152 DSVVL-SEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSV 227 (846)
T ss_pred cceee-ecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeE
Confidence 11111 123467778888 788999998888 99999999888776543222 236688988877666555557
Q ss_pred EEeccc
Q 020021 316 SFWIPD 321 (332)
Q Consensus 316 ~~w~~~ 321 (332)
++....
T Consensus 228 ~i~~I~ 233 (846)
T KOG2066|consen 228 KICSIK 233 (846)
T ss_pred EEEEEe
Confidence 776554
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00035 Score=67.33 Aligned_cols=111 Identities=12% Similarity=0.218 Sum_probs=80.1
Q ss_pred CcEEEEEECCCCCEEEEEeC----CCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC-CceeEEEEcc
Q 020021 35 GRISSMDFHKSSSYLVTASD----DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DESLRLLSLH 109 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~----D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~-d~~v~v~d~~ 109 (332)
+.-+-++|+|..+++|.++- -|+|.|| +++|+...... .+..+.++||+|..- +.+. || -+.+-+|.-+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~--vLa~--gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEF--VLAQ--GWEMGVSDVQKTN 89 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHH--HHhh--ccccceeEEEecC
Confidence 33344678999999988774 4788888 46676432221 122345688987643 3322 33 3568889887
Q ss_pred CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCC
Q 020021 110 DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQR 151 (332)
Q Consensus 110 ~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~ 151 (332)
+.+.......|+.+|..++|+++|..++|+..=|.+.+|...
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 776666667899999999999999999999999999999764
No 326
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.92 E-value=0.012 Score=53.02 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=110.0
Q ss_pred EECCCCCEE-EEEeCCCc--EEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021 41 DFHKSSSYL-VTASDDES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (332)
Q Consensus 41 ~~s~dg~~l-~tgs~D~t--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~ 117 (332)
+|.+||+.| +.+..|+. +.+-|+.+++..+...+........++++..+.+++-.. ...++..|+.+.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEE
Confidence 467888665 44555654 555578888876655443222334566777777766432 347888899888766555
Q ss_pred ecccccEEEEEe--cCCCCeEEEeeC---C-------------------CcEEEEeCCCceEEEEEEecCce-eEEEcC-
Q 020021 118 KGHHDRVVSLSL--CSSKDCFISGSL---D-------------------RTVLLWDQRAEKCQGLLRVQGRP-AAAYDD- 171 (332)
Q Consensus 118 ~~h~~~V~~v~~--~~~~~~l~s~s~---D-------------------g~i~iWd~~~~~~~~~~~~~~~~-~~~~~~- 171 (332)
.-....+-...| +.++..++-.-. | ..|.--|+++++....+....-. =..++|
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 555555443333 344554432211 1 11222244444433333222100 112222
Q ss_pred -CCeEEEEEeC---C-EEEEEECccCCCCCeeEEEecCCCC--CceeEEEcCCCCEEEEE-----cCCCeEEEEEccCCe
Q 020021 172 -QGLVFAVAFG---G-YIRMFDARKYEKGPFDIFSVGGDIS--DANVVKFSNDGRLMLLT-----TMEGHIHVLDSFRGT 239 (332)
Q Consensus 172 -~~~~~~~~~~---~-~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~v~~s~dg~~l~~~-----~~dg~i~i~d~~~~~ 239 (332)
+..+..|-.+ . .-|+|-++...... ..+..+.. .+.---|+|||..+.-- +.+..|.-+|+.+++
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 2333334432 2 23677655322111 11111111 11112478999866432 223467778888876
Q ss_pred EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC----------------cEEEEECCCCceEEEecCCC----------
Q 020021 240 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG----------------SVYAWSVRSGKEVASWMSFD---------- 293 (332)
Q Consensus 240 ~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg----------------~i~vWd~~~~~~~~~~~~~~---------- 293 (332)
....... ..+.-.-.++||++++-=+.|. -|+++++..++... +..|.
T Consensus 276 ~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 276 RRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDR 349 (386)
T ss_dssp EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBS
T ss_pred ceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCC
Confidence 5332221 1233345678998876544442 56778887766432 21121
Q ss_pred C-CCceEEeCCCeeEEEeccc
Q 020021 294 T-EPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 294 ~-~v~~l~~sp~~~~l~t~~~ 313 (332)
. .-+..+|+||+++++-.|.
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp STT----EE-TTSSEEEEEE-
T ss_pred ccCCCCCccCCCCCEEEEECC
Confidence 1 1356899999998876654
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.91 E-value=0.013 Score=51.23 Aligned_cols=246 Identities=11% Similarity=0.116 Sum_probs=128.0
Q ss_pred EEEECCC-CCEEEEEeCCC-cEEEEEcCCCeeeEEeeecccce--eEEEEccCCCEEEEecCC--CCCceeEEEEcc-CC
Q 020021 39 SMDFHKS-SSYLVTASDDE-SIRLYDVTAATCLKTINSKKYGV--DLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-DN 111 (332)
Q Consensus 39 ~i~~s~d-g~~l~tgs~D~-tv~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~s~~--g~d~~v~v~d~~-~~ 111 (332)
.++.+|. +..++-+-.-| ...+||..+++.++.+......- --.+|+++++.+++.-.+ .-.+.|-|||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 4566774 45556666665 46788999999887765433221 125899999988876432 114679999998 44
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEec-CceeEEEcCCCeEEEEEeCCE-EEEEEC
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFAVAFGGY-IRMFDA 189 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-i~vwd~ 189 (332)
+.+..+..|--.--.+.+.||++.|+-+-. =|.- +..+++. .+.+. ..+... +.=..+|. +.-|.+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~--kLNl~tM~psL~-------~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRA--KLNLDTMQPSLV-------YLDARSGALLEQVEL 156 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCce--ecChhhcCCceE-------EEecCCCceeeeeec
Confidence 445555554333345678899976665521 1110 0111110 00000 001111 11011111 111111
Q ss_pred ccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-------EEEEEccCCeEeEEeeec----CCCCCcceEEE
Q 020021 190 RKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-------IHVLDSFRGTLLSTYNVK----PVSRNSTLEAS 258 (332)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~----~~~~~~~~~v~ 258 (332)
. ...+...++-++++++|..+...=..|. +.+++. ++.+..+... ....+.+-+|+
T Consensus 157 p-----------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 157 P-----------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred C-----------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEE
Confidence 0 0112234556677777766554433222 223322 2212222110 11235677899
Q ss_pred ECCCCCEEEEEcC-CCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021 259 FSPEGMFVISGSG-DGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 259 ~spdg~~l~sgs~-Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
+++++.+++..|- -+.+.+||..+++.+....-.. +-.|+-.+++ +++|.+
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeeeecCCc-eEEeCC
Confidence 9999988866655 5689999999999887643222 2345555555 444443
No 328
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.90 E-value=3.9e-05 Score=44.06 Aligned_cols=38 Identities=34% Similarity=0.573 Sum_probs=34.1
Q ss_pred ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021 112 KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD 149 (332)
Q Consensus 112 ~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd 149 (332)
+++..+..|...|.++.|++.+..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.90 E-value=0.00033 Score=65.11 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=59.0
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 206 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 206 ~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
.+.+.+++++|+.+.++.|..||.|.+||...+..... . ..-....++|+|+|.+++.|+.-|.+.+||+.-
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 46789999999999999999999999999876643322 1 112334689999999999999999999999964
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.018 Score=52.90 Aligned_cols=219 Identities=15% Similarity=0.154 Sum_probs=140.6
Q ss_pred EEEEECCCCC-EEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021 38 SSMDFHKSSS-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116 (332)
Q Consensus 38 ~~i~~s~dg~-~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~ 116 (332)
..+.+++.++ ..++...+..|.+.|..+.++.+...-.. ....+++.++++.++.+..+..++++.+.|-.+++.+.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 4667888887 56667777999999988888887765544 456788999998888776432478899999988887776
Q ss_pred eecccccEEEEEecCCCCeEE-EeeCCCcEEEEeCCCceEEE-E----E-EecCceeEEEcCCCeEEEEEeC----CEEE
Q 020021 117 FKGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQG-L----L-RVQGRPAAAYDDQGLVFAVAFG----GYIR 185 (332)
Q Consensus 117 ~~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iWd~~~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~~~----~~i~ 185 (332)
...-..+ ..+++.|++..+. +-..++++.+.|.+...... . . .........+++++..+.+..+ +.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 5443345 8899999998554 44578999999977665442 1 1 1112234455666654444432 4677
Q ss_pred EEECccCCCCCeeE-EEecCCCCCceeEEEcCCCCEEEEE-cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 186 MFDARKYEKGPFDI-FSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 186 vwd~~~~~~~~~~~-~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
..|...... +.. ... +.. ....+.++|+|+.+-+. ...+.+.+.|..+..+................+++.+.
T Consensus 235 ~id~~~~~v--~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 235 KIDTATGNV--TATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeCCCceE--EEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 777654321 100 011 111 23568899999988777 44589999998887776554332222233444555443
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0023 Score=61.59 Aligned_cols=153 Identities=10% Similarity=0.167 Sum_probs=101.8
Q ss_pred eccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccC-----CCEE
Q 020021 30 FRDYNGRISSMDFHKS-------------SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-----PTTV 91 (332)
Q Consensus 30 l~~h~~~I~~i~~s~d-------------g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~ 91 (332)
|.-|.|.|.-..+.-. |.+++|||.||+|.|-.+.+.+...++..+. ++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r-piksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR-PIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC-cceeEEeccchhhhhhhhe
Confidence 6778888877666544 9999999999999999998877776665543 5778899887 3345
Q ss_pred EEecCCCCCceeEEEEcc--CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCc-----
Q 020021 92 IYSSKNGWDESLRLLSLH--DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----- 164 (332)
Q Consensus 92 ~~~s~~g~d~~v~v~d~~--~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~----- 164 (332)
+++.. -+ +.++.-. ..+-...+..-.++|.++.|. |+++|=++.+|. +++|..+++.+..+..+..
T Consensus 133 v~GG~---ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv-~vyd~~~~~~l~~i~~p~~~~R~e 205 (846)
T KOG2066|consen 133 VSGGM---AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV-KVYDTPTRQRLTNIPPPSQSVRPE 205 (846)
T ss_pred eecCc---ce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCc-EEEeccccceeeccCCCCCCCCcc
Confidence 65532 33 4444311 111111355567889999996 567777776665 9999988876665543321
Q ss_pred ---eeEEEcCCCeEEEEEeCCEEEEEECcc
Q 020021 165 ---PAAAYDDQGLVFAVAFGGYIRMFDARK 191 (332)
Q Consensus 165 ---~~~~~~~~~~~~~~~~~~~i~vwd~~~ 191 (332)
+-..+. +...+..|...+|++..++.
T Consensus 206 ~fpphl~W~-~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 206 LFPPHLHWQ-DEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred cCCCceEec-CCCeEEEecCCeEEEEEEec
Confidence 112222 33445578888999998873
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.0019 Score=59.88 Aligned_cols=182 Identities=16% Similarity=0.195 Sum_probs=102.1
Q ss_pred ceeEEEEccCCCEEEEecCCCCC-ceeEEEEccCCceEEEe--ecccccEEEEEecCCCCeEE-EeeCCCcEEEE--eCC
Q 020021 78 GVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYLRYF--KGHHDRVVSLSLCSSKDCFI-SGSLDRTVLLW--DQR 151 (332)
Q Consensus 78 ~v~~~~~~~~~~~~~~~s~~g~d-~~v~v~d~~~~~~~~~~--~~h~~~V~~v~~~~~~~~l~-s~s~Dg~i~iW--d~~ 151 (332)
.+..-.|++++..+++.+...-. ..+.++|+++++....+ .++. ..-+|+|||+.|+ +...||...+| |+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 34445678888877666443323 46888999887754433 3333 3457999998654 66778876666 333
Q ss_pred CceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCC-C--
Q 020021 152 AEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTME-G-- 228 (332)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d-g-- 228 (332)
.+........ .+. -..=.+||||+.++..+.. |
T Consensus 271 ~~~~~~Lt~~-----------------------------------------~gi---~~~Ps~spdG~~ivf~Sdr~G~p 306 (425)
T COG0823 271 GKNLPRLTNG-----------------------------------------FGI---NTSPSWSPDGSKIVFTSDRGGRP 306 (425)
T ss_pred CCcceecccC-----------------------------------------Ccc---ccCccCCCCCCEEEEEeCCCCCc
Confidence 3321000000 000 0012589999988876554 3
Q ss_pred eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-Cc--EEEEECCCCceEEEecCCCCCCceEEeCCCe
Q 020021 229 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GS--VYAWSVRSGKEVASWMSFDTEPPVIKWTPGS 305 (332)
Q Consensus 229 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-g~--i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~ 305 (332)
.|.+.|+..+.. ..+..... +.. .-.+||||++++-.+.. |. |.+.|+.++..+. ....+.....-+|.|++
T Consensus 307 ~I~~~~~~g~~~-~riT~~~~--~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 307 QIYLYDLEGSQV-TRLTFSGG--GNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNG 381 (425)
T ss_pred ceEEECCCCCce-eEeeccCC--CCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCC
Confidence 477777665544 22222111 111 34689999999988753 44 6666666655322 22333333445677777
Q ss_pred eEEEec
Q 020021 306 LMFVTG 311 (332)
Q Consensus 306 ~~l~t~ 311 (332)
++++..
T Consensus 382 ~~i~~~ 387 (425)
T COG0823 382 RMIMFS 387 (425)
T ss_pred ceEEEe
Confidence 766543
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0025 Score=56.62 Aligned_cols=83 Identities=10% Similarity=0.178 Sum_probs=64.1
Q ss_pred eEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eEEEeeCCCcEEE
Q 020021 69 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CFISGSLDRTVLL 147 (332)
Q Consensus 69 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l~s~s~Dg~i~i 147 (332)
.+-+..+...|..++|+|....++..+ ..++.|++.|+++......+..| +.+++++|..+.. ++..|-..|.|.+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~a--sl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLA--SLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccccchhhhhhccCccccceeeee--ccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 333445555678899999988654433 24789999999999888888878 8999999998766 5556668999999
Q ss_pred EeCCCce
Q 020021 148 WDQRAEK 154 (332)
Q Consensus 148 Wd~~~~~ 154 (332)
+|++...
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998654
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.005 Score=57.42 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=93.7
Q ss_pred EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEE-CccCC
Q 020021 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFD-ARKYE 193 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd-~~~~~ 193 (332)
+.+....-....+.++|+++.++- +.||.-.++.....+.. ....+. ..++...+.++..-..+.|.++. .....
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k--~~G~g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK--AFGSGL-SFVWSSRNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE--EEEE-S-EEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc--ccCcee-EEEEecCccEEEEECCCeEEEEEcCcccc
Confidence 344445556788999999987766 66777777763322221 122222 34555556655555578888863 32211
Q ss_pred CCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC
Q 020021 194 KGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG 273 (332)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg 273 (332)
...+... ..+..+ | + |.++...+.+ .|.+||..+++.+.++.. ..+..|.||++|.++|-.+.|
T Consensus 102 ---~k~i~~~---~~~~~I-f-~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 102 ---VKSIKLP---FSVEKI-F-G-GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp ---T-----S---S-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--
T ss_pred ---ceEEcCC---cccceE-E-c-CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-
Confidence 1111111 012222 2 2 8877777555 899999999999887763 236789999999999999755
Q ss_pred cEEEEECCCC-----------ceEEEecCCCCCCceEEeCCCeeEEEeccceEEE
Q 020021 274 SVYAWSVRSG-----------KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELSF 317 (332)
Q Consensus 274 ~i~vWd~~~~-----------~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~ 317 (332)
+++|.+.... .......-....|.+..|..|- ++-|...-+++
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~-fiYtT~~~lkY 219 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC-FIYTTSNHLKY 219 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE-EEEE-TTEEEE
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCE-EEEEcCCeEEE
Confidence 6888886443 0233332225578888888773 33333224544
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.67 E-value=0.029 Score=51.69 Aligned_cols=269 Identities=14% Similarity=0.110 Sum_probs=131.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC----
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---- 111 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~---- 111 (332)
.|+.++|.++..-|+.|-..|.|-||....++.-. ...........+.+- . ..+..-.+-|+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~-----~----~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF-----S----LNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc-----c----ccCCCcceEEehhhCCcc
Confidence 58999999999899999999999999765332111 000000000000000 0 00111222333221
Q ss_pred -----ceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC---------c-e-----eEEEcC
Q 020021 112 -----KYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------R-P-----AAAYDD 171 (332)
Q Consensus 112 -----~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---------~-~-----~~~~~~ 171 (332)
.+...++..+++|++++.+.= .+++.|..+|.+.+-|+|....+..-.... . . ...+..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 133445556889999998743 489999999999999999887655433222 0 0 112233
Q ss_pred CC---eEEEEE-eCCEEEEEECccCCCCCeeEEE--ec-CCCCCceeE-EEcCC-C-------------------CEEEE
Q 020021 172 QG---LVFAVA-FGGYIRMFDARKYEKGPFDIFS--VG-GDISDANVV-KFSND-G-------------------RLMLL 223 (332)
Q Consensus 172 ~~---~~~~~~-~~~~i~vwd~~~~~~~~~~~~~--~~-~~~~~v~~v-~~s~d-g-------------------~~l~~ 223 (332)
++ ..+.++ ..|.+.+|.+.-...+.+.... .. .+...+..+ .|+.+ | .-++.
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 33 333344 4589988887522222232111 10 122233322 23222 1 12455
Q ss_pred EcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE-----CCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC----C
Q 020021 224 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF-----SPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD----T 294 (332)
Q Consensus 224 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~-----spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~----~ 294 (332)
...+..|+++...+.+..+.... ....+..+.+ ...+..|++-..+|.|+++.+..-+.+....-.. .
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred EEcccceEEEeCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 55677899999887766543321 1112223344 2367788888999999999999988877654322 2
Q ss_pred CCceEEeCCCeeEEEec-cceEEEec
Q 020021 295 EPPVIKWTPGSLMFVTG-SSELSFWI 319 (332)
Q Consensus 295 ~v~~l~~sp~~~~l~t~-~~d~~~w~ 319 (332)
.....+++++|..+.-. -.+..++.
T Consensus 308 ~~~~ssis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred cccccEECCCCCEEEEeCcccEEEEE
Confidence 23557788888776554 44655554
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0087 Score=58.19 Aligned_cols=194 Identities=17% Similarity=0.248 Sum_probs=111.4
Q ss_pred EEEEccCCCEEEEecCCCCCceeEEEEccCCce-EEEeeccccc-EEEEEecCCCCeEEEeeCCCc-----EEEEeCCC-
Q 020021 81 LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-LRYFKGHHDR-VVSLSLCSSKDCFISGSLDRT-----VLLWDQRA- 152 (332)
Q Consensus 81 ~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~-~~~~~~h~~~-V~~v~~~~~~~~l~s~s~Dg~-----i~iWd~~~- 152 (332)
.-|+.+.+..++.++. ++ +||-++++-. ++.++.+... |..+....+...|++.+.|+. +++||++.
T Consensus 28 isc~~s~~~~vvigt~---~G--~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTA---DG--RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred eeEEcCCCceEEEeec---cc--cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 3467777778888764 34 4444544433 3677777777 444444444568999988765 89999753
Q ss_pred -----ceEEEEEEe-----c--C--ceeEEEcCCCeEEEEEe-CCEEEEEE--CccCCCCCeeEEEecCCCCCceeEEEc
Q 020021 153 -----EKCQGLLRV-----Q--G--RPAAAYDDQGLVFAVAF-GGYIRMFD--ARKYEKGPFDIFSVGGDISDANVVKFS 215 (332)
Q Consensus 153 -----~~~~~~~~~-----~--~--~~~~~~~~~~~~~~~~~-~~~i~vwd--~~~~~~~~~~~~~~~~~~~~v~~v~~s 215 (332)
+.|....+. + . .+....+.+-..+++|+ +|.|..+. +...+ +....+...+ ..+|+.+++-
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr-gsr~~~~~~~-~~pITgL~~~ 180 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR-GSRQDYSHRG-KEPITGLALR 180 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc-ccceeeeccC-CCCceeeEEe
Confidence 334322221 1 1 12344455556667776 68888773 32211 1112222222 2579999999
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCeE-eEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021 216 NDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 216 ~dg~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
.|++.++......+|.+|.+....+ ...+. .+.....+.+|++....+++|+. ..+++++....+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGP 247 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEecC-ceEEEEcCCCcce
Confidence 9998744444555788888763221 11122 33445556778776654555543 4588888764433
No 337
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.65 E-value=0.0022 Score=62.57 Aligned_cols=173 Identities=18% Similarity=0.305 Sum_probs=115.2
Q ss_pred CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCC-eEE
Q 020021 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG-LVF 176 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 176 (332)
|.-..+..+|+.+.+..+...--...|+-+. .+++.+..|..-|+|.+-|.++-+.+.++..+......++-.| .++
T Consensus 154 g~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLi 231 (1118)
T KOG1275|consen 154 GLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLI 231 (1118)
T ss_pred chhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEE
Confidence 3345566778877766555543343455443 4578999999999999999999888888877665555565444 566
Q ss_pred EEEe---------CCEEEEEECccCCC-CCeeEEEecCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEEccC-CeE-eEE
Q 020021 177 AVAF---------GGYIRMFDARKYEK-GPFDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR-GTL-LST 243 (332)
Q Consensus 177 ~~~~---------~~~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg-~~l~~~~~dg~i~i~d~~~-~~~-~~~ 243 (332)
++|. |..|+|||+|.++. .++.+ + ..-.-+.|.|.- +.+++.+..|..++.|..+ +.. ...
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-----~-~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~ 305 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-----P-YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGV 305 (1118)
T ss_pred EeecccccccccccchhhhhhhhhhhccCCccc-----c-cCchhhhhcccccceEEEEecccceeeccccccCCCccce
Confidence 6664 35789999997642 11111 0 112345677654 4577888889999988322 111 223
Q ss_pred eeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEE
Q 020021 244 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 244 ~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd 279 (332)
+...+. ...+...++|++++.+|-|..+|.|.+|.
T Consensus 306 ~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 306 KMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 333222 23367789999999999999999999997
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.64 E-value=0.032 Score=47.82 Aligned_cols=214 Identities=12% Similarity=0.190 Sum_probs=105.4
Q ss_pred eeEeccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEEcCCCeeeEEeeeccc-ceeEEEEccCCCEEEEecCCCCCceeE
Q 020021 27 GMSFRDYNGRISSMDFHKSSSY-LVTASDDESIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNGWDESLR 104 (332)
Q Consensus 27 ~~~l~~h~~~I~~i~~s~dg~~-l~tgs~D~tv~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~s~~g~d~~v~ 104 (332)
.+.+.+-...+++|+|+|+.+. ++.....+.|...+. +|+.++.+..... -...+++..++..++.. ..++.+.
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~---Er~~~L~ 89 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE---ERDQRLY 89 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE---TTTTEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE---cCCCcEE
Confidence 4567787888999999998665 555666677777776 5788887765432 25567776666444433 2256777
Q ss_pred EEEccCCc---eE---EEe-----ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCC
Q 020021 105 LLSLHDNK---YL---RYF-----KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG 173 (332)
Q Consensus 105 v~d~~~~~---~~---~~~-----~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 173 (332)
+.++.... .. ..+ ..++..+-+++|.+.++.|+.+-...-.+++.++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~------------------- 150 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP------------------- 150 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-------------------
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-------------------
Confidence 77763321 11 111 1244557888888877777666544444444332100
Q ss_pred eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCC-
Q 020021 174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR- 251 (332)
Q Consensus 174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~- 251 (332)
....+.+.+...... ......+..++++.|. |++++.+..+..+..+| .+|+.+..+.+.....
T Consensus 151 ------~~~~~~~~~~~~~~~-------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 151 ------GGFDLFVSDDQDLDD-------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG 216 (248)
T ss_dssp -------SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG
T ss_pred ------Cccceeecccccccc-------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC
Confidence 000111111100000 0011134567888774 67888888899999999 6788777666543211
Q ss_pred -----CcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021 252 -----NSTLEASFSPEGMFVISGSGDGSVYAW 278 (332)
Q Consensus 252 -----~~~~~v~~spdg~~l~sgs~Dg~i~vW 278 (332)
.-.-.++|.++|+..++. +-...+++
T Consensus 217 l~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 217 LSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 112358999988766654 44455544
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.62 E-value=0.095 Score=53.22 Aligned_cols=199 Identities=12% Similarity=0.204 Sum_probs=119.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc----cC
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL----HD 110 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~----~~ 110 (332)
+.|.++.|..+++.++-+..+|.|.+=|.++... .....-..+|...+|+|+...++.... .+++.+-.- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccchh
Confidence 6899999999999998999999999988876432 222334567899999999988776643 233332211 00
Q ss_pred -----------CceE--------EEeec---------------------ccccEEEEEecCCCCeEEEee----CC-CcE
Q 020021 111 -----------NKYL--------RYFKG---------------------HHDRVVSLSLCSSKDCFISGS----LD-RTV 145 (332)
Q Consensus 111 -----------~~~~--------~~~~~---------------------h~~~V~~v~~~~~~~~l~s~s----~D-g~i 145 (332)
++.+ ..|+| -.+.=+.++|-.||.+||... .+ ++|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0000 01111 111123588889999888732 34 899
Q ss_pred EEEeCCCceEEEEEE--ecCceeEEEcCCCeEEEEEe----CCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCC
Q 020021 146 LLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFAVAF----GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGR 219 (332)
Q Consensus 146 ~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 219 (332)
++||-+ +....+-. ........+-|.|..+++.. ++.|.+|.-.-...+.+.+.- .-+...+..++++.++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCC
Confidence 999965 33222111 11123456667776666542 467888864322223222111 01112378899999999
Q ss_pred EEEE---EcCCCeEEEEEccCCe
Q 020021 220 LMLL---TTMEGHIHVLDSFRGT 239 (332)
Q Consensus 220 ~l~~---~~~dg~i~i~d~~~~~ 239 (332)
.+++ ......|++|-....+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ceeeeecccccceEEEEEecCeE
Confidence 9988 4455569999875543
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.51 E-value=0.043 Score=51.30 Aligned_cols=227 Identities=12% Similarity=0.130 Sum_probs=111.4
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEE-
Q 020021 28 MSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL- 106 (332)
Q Consensus 28 ~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~- 106 (332)
+.+....-....++++|+|+.++. ..|+.-.||.......... + .....+|.+.+. ++.... .++|+++
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G---~g~~~vw~~~n~-yAv~~~---~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--G---SGLSFVWSSRNR-YAVLES---SSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--E---E-SEEEE-TSSE-EEEE-T---TS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--C---ceeEEEEecCcc-EEEEEC---CCeEEEEE
Confidence 345555566889999999988876 7788888888544333221 1 123467777554 333322 4578885
Q ss_pred EccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEE
Q 020021 107 SLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRM 186 (332)
Q Consensus 107 d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 186 (332)
+.+... .+.++-. ..+..+- + |..|...+.+ .|.+||+.+++.+..+..+....+.+++++.+++...+..+.+
T Consensus 96 n~~~~~-~k~i~~~-~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 96 NFKNEV-VKSIKLP-FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp TTEE-T-T-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred cCcccc-ceEEcCC-cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEE
Confidence 443322 1122211 1222222 2 7766666554 8999999999888777655445677888888888888888888
Q ss_pred EECccC------CCC---CeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEE
Q 020021 187 FDARKY------EKG---PFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 257 (332)
Q Consensus 187 wd~~~~------~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v 257 (332)
++.... ..+ .+..... -...|.+.+|-.| .++-.+.. +++- +..|+.-.... -..+..-+
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~----ld~~~yll 238 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH----LDKPLYLL 238 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-----SS--EEE
T ss_pred EEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE----cCCceEEE
Confidence 764321 000 2222221 0245667777655 44444444 6665 44454321111 12344445
Q ss_pred EECCCCCEEEEEcCCCcEEEEECC
Q 020021 258 SFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 258 ~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
.+.|..+.+.....|+.+..+.+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEccCCEEEEEECCCCEEEEEEC
Confidence 666766677777777777777664
No 341
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.043 Score=48.71 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=72.3
Q ss_pred CCceeEEEcCCCCEEEEEcC-----------CCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc-CCCc
Q 020021 207 SDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGS 274 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs-~Dg~ 274 (332)
...+.+...|+|++.+.... -|.++.+|. .+..+.... .+-...+.++||||++.|+.+. ..+.
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---DDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec---CcEEecCceEECCCCCEEEEEeCCCCe
Confidence 35577889999998776544 134666664 344433222 1112334689999998777774 4578
Q ss_pred EEEEECCC--Cce-----EEEecCCCCCCceEEeCCCeeEEEeccc---eEEEeccccccccccc
Q 020021 275 VYAWSVRS--GKE-----VASWMSFDTEPPVIKWTPGSLMFVTGSS---ELSFWIPDLSKLGAYV 329 (332)
Q Consensus 275 i~vWd~~~--~~~-----~~~~~~~~~~v~~l~~sp~~~~l~t~~~---d~~~w~~~~~~~~~~~ 329 (332)
|+-+++.. +.. ...+....+..-.++...+|.+.+.+.. .+.+|+|+...+++++
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~ 251 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIK 251 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEE
Confidence 88887752 111 1112223445555777777777744322 6999999977777664
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0063 Score=56.50 Aligned_cols=97 Identities=21% Similarity=0.301 Sum_probs=60.2
Q ss_pred eEEEcCCCCEEEEEc-CCC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC-CC--cEEEEECCCCc
Q 020021 211 VVKFSNDGRLMLLTT-MEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DG--SVYAWSVRSGK 284 (332)
Q Consensus 211 ~v~~s~dg~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-Dg--~i~vWd~~~~~ 284 (332)
.-+|||||+.++... .|| .|+++|+..++... +... ......=.|+|||++++=.|. .| .|.+.+.....
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~---~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG---FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccC---CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 347999998877654 444 58888887766433 2211 111123479999998887754 34 55666665443
Q ss_pred eEEEecCCCCCCceEEeCCCeeEEEecc
Q 020021 285 EVASWMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 285 ~~~~~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
+..++.....-..-.|||||++++..+
T Consensus 318 -~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 318 -VTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred -eeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 333333333334677999999887766
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.41 E-value=0.063 Score=45.47 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=74.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 125 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~ 125 (332)
..+++.||..+.++--|..+|+.+-...-. ..+.+-+.. -+++++.+.. .+-+.+.+.++|.....+..-. .|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~-~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILE-TVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehh-hhc
Confidence 467888999999999999988876432211 112221111 3556777765 4568888999987666555322 222
Q ss_pred -EEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC
Q 020021 126 -SLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG 163 (332)
Q Consensus 126 -~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~ 163 (332)
.....+++..+.-++.|++...-|.++..|+-..+..+
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 22344678899999999999999999988876555444
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.29 E-value=0.079 Score=52.62 Aligned_cols=220 Identities=18% Similarity=0.240 Sum_probs=122.8
Q ss_pred CCEEEEecCCCCCceeEEEEccCCceEEEeeccccc-EEEEEecCC-------CCeEEEeeCCCcEEEEeCCCce--EEE
Q 020021 88 PTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDR-VVSLSLCSS-------KDCFISGSLDRTVLLWDQRAEK--CQG 157 (332)
Q Consensus 88 ~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~-V~~v~~~~~-------~~~l~s~s~Dg~i~iWd~~~~~--~~~ 157 (332)
.+.++..... -.+.+.-.|++.|+.+..+.-|... |..+ .|+ +.....|=.+..+..||+|-.. ++.
T Consensus 492 d~~mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCC-CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 3344444321 2467888899999999999887754 5544 443 3345667778889999988542 221
Q ss_pred --EEEec---CceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE
Q 020021 158 --LLRVQ---GRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 232 (332)
Q Consensus 158 --~~~~~---~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i 232 (332)
..... ...+.+...+|.++.++.+|.||+||-. ..+.+..+. +--.+|..|..+.||+.+++.+.. .+.+
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp---~lG~pI~~iDvt~DGkwilaTc~t-yLlL 643 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP---GLGDPIIGIDVTADGKWILATCKT-YLLL 643 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC---CCCCCeeEEEecCCCcEEEEeecc-eEEE
Confidence 00111 1234555677888888889999999932 222221111 222578999999999987766544 5556
Q ss_pred EEcc--CC----e-------------EeEEeeecCCCC--------C--cceEEEECC----CCCEEEEEcCCCcEEEEE
Q 020021 233 LDSF--RG----T-------------LLSTYNVKPVSR--------N--STLEASFSP----EGMFVISGSGDGSVYAWS 279 (332)
Q Consensus 233 ~d~~--~~----~-------------~~~~~~~~~~~~--------~--~~~~v~~sp----dg~~l~sgs~Dg~i~vWd 279 (332)
++.. .| + ....+.+.+.|. . ..+..-|+- ..+.|+|. ....+-+||
T Consensus 644 i~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivts-tG~f~v~Wn 722 (794)
T PF08553_consen 644 IDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTS-TGPFVVTWN 722 (794)
T ss_pred EEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEe-ccCEEEEEE
Confidence 6642 11 0 111122222111 1 111223431 34455544 567899999
Q ss_pred CCC---Cc-eEEEecCCCCCCce--EEeCCCeeEEEeccceEE
Q 020021 280 VRS---GK-EVASWMSFDTEPPV--IKWTPGSLMFVTGSSELS 316 (332)
Q Consensus 280 ~~~---~~-~~~~~~~~~~~v~~--l~~sp~~~~l~t~~~d~~ 316 (332)
+.. +. ....++.....|.+ ..|..|...+++--.||.
T Consensus 723 f~kV~~g~~~~Y~ikry~~~V~~dnF~fg~d~~vival~~dV~ 765 (794)
T PF08553_consen 723 FKKVKRGKKDPYQIKRYDENVVADNFKFGSDKNVIVALPNDVN 765 (794)
T ss_pred HHHHhCCCCCceEEEEcCCceEEccceeCCCCcEEEEccchhh
Confidence 954 22 22334444445543 446666666666555543
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.26 E-value=0.16 Score=47.15 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=123.2
Q ss_pred cEEEEEECCCCCEEEEE-eCC----CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCC--------Cce
Q 020021 36 RISSMDFHKSSSYLVTA-SDD----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------DES 102 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tg-s~D----~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~--------d~~ 102 (332)
.+...++||||+++|-+ +.. .++++.|+.+++.+...-... ....++|.++++.+++...+.. ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999987633 333 469999999997765321111 1223899999998888764331 445
Q ss_pred eEEEEccCCce--EEEeeccccc--EEEEEecCCCCeEEEe-eCC---CcEEEEeCCCc-----eEEEEEE-ecCceeEE
Q 020021 103 LRLLSLHDNKY--LRYFKGHHDR--VVSLSLCSSKDCFISG-SLD---RTVLLWDQRAE-----KCQGLLR-VQGRPAAA 168 (332)
Q Consensus 103 v~v~d~~~~~~--~~~~~~h~~~--V~~v~~~~~~~~l~s~-s~D---g~i~iWd~~~~-----~~~~~~~-~~~~~~~~ 168 (332)
|..|.+.+... ...+.+.... ...+..++|+++++.. ... ..+.+-|...+ ....... .......+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888876543 3455554433 5678889999976543 332 23666676653 2221211 11221222
Q ss_pred EcCCCeEEEEEeC----CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEE-cCCC--eEEEEEccCCeEe
Q 020021 169 YDDQGLVFAVAFG----GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLT-TMEG--HIHVLDSFRGTLL 241 (332)
Q Consensus 169 ~~~~~~~~~~~~~----~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~-~~dg--~i~i~d~~~~~~~ 241 (332)
...++.++..+.+ +.|...++...........-. .+...+....++..+.+++.. ..++ .|+++|+..+...
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 2234444433332 455556665443211111111 122223333444445444444 4443 6888998734444
Q ss_pred EEeeecCCCCCcceEEEECCCCC-EEEEEcC---CCcEEEEECCCCce
Q 020021 242 STYNVKPVSRNSTLEASFSPEGM-FVISGSG---DGSVYAWSVRSGKE 285 (332)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~spdg~-~l~sgs~---Dg~i~vWd~~~~~~ 285 (332)
....... ...+..+...+++. +.++.+. =++++.+|+.+++.
T Consensus 363 ~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 363 REIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4433221 22233333334443 2222222 23788888877764
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.0009 Score=63.38 Aligned_cols=104 Identities=13% Similarity=0.249 Sum_probs=77.9
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE--
Q 020021 209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV-- 286 (332)
Q Consensus 209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~-- 286 (332)
+.--+++..+++++.|+.-|.+++|....++...... . .....+.....|++.+++|.|+..|.|.|+.+.++...
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-E-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-c-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3344677889999999999999999977665442221 1 12344455688999999999999999999988764321
Q ss_pred ---EEe-cCCCCCCceEEeCCCeeEEEeccce
Q 020021 287 ---ASW-MSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 287 ---~~~-~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
..+ +.|+..|++++|++|++.|-+|...
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCC
Confidence 111 3578899999999999999998765
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.08 E-value=0.14 Score=45.79 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=78.4
Q ss_pred CcEEEEeCCCc-----eEEE--EEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEc
Q 020021 143 RTVLLWDQRAE-----KCQG--LLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFS 215 (332)
Q Consensus 143 g~i~iWd~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s 215 (332)
|.|.++++... +... ....++.......-++. +.++.++.|.+|++...+ .+.... ........+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~--~l~~~~--~~~~~~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSK--TLLKKA--FYDSPFYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTS--SEEEEE--EE-BSSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcc--cchhhh--eecceEEEEEEe
Confidence 88999998774 2221 11223322222223555 667788999999987654 122111 111223444555
Q ss_pred CCCCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021 216 NDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 216 ~dg~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
.-+.+++++..-..+.++.... +..+..+... .....+.++.|-+|++.++.+..+|.+.++...
T Consensus 137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 5577899999888888774432 3333333222 224556777887677799999999999999886
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.05 E-value=0.31 Score=46.46 Aligned_cols=229 Identities=19% Similarity=0.257 Sum_probs=123.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc------c-ee-EEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEe
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKY------G-VD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYF 117 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~------~-v~-~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~ 117 (332)
+..+..++.|+.|.-.|..+|+.+-.+..... . +. .++.. ++..++.++. ++.+..+|.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence 45677788899999999999988765543221 0 00 01111 2245555543 678999999999987766
Q ss_pred eccccc-----EEE-EEecCCCCeEEEee---------CCCcEEEEeCCCceEEEEEEecCc------------------
Q 020021 118 KGHHDR-----VVS-LSLCSSKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGR------------------ 164 (332)
Q Consensus 118 ~~h~~~-----V~~-v~~~~~~~~l~s~s---------~Dg~i~iWd~~~~~~~~~~~~~~~------------------ 164 (332)
...... +.+ ..+. +..++.++ .++.+...|..+++..-.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 533221 111 1111 23444443 467888889988887665543210
Q ss_pred -----eeEEEcC-CCeEEEEEeCC------------------EEEEEECccCCCCCeeEEEecCCC-------CCceeEE
Q 020021 165 -----PAAAYDD-QGLVFAVAFGG------------------YIRMFDARKYEKGPFDIFSVGGDI-------SDANVVK 213 (332)
Q Consensus 165 -----~~~~~~~-~~~~~~~~~~~------------------~i~vwd~~~~~~~~~~~~~~~~~~-------~~v~~v~ 213 (332)
....+++ .+.++....++ .+..+|..+.+. .-.+....+. .......
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~--~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV--KWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE--EEEeeCCCCCCcccccCCCCeEEe
Confidence 0112232 34455544333 566666654321 1111111110 0000000
Q ss_pred E-cCCCC---EEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE-----------------EcCC
Q 020021 214 F-SNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-----------------GSGD 272 (332)
Q Consensus 214 ~-s~dg~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s-----------------gs~D 272 (332)
. .-+|. .++.++.+|.++.+|..+|+.+=...... ..++.+| +..++. ...+
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec------cccccCC-ceEEEccccccccCcccccCCCCCCCc
Confidence 1 12343 57788899999999999999875543210 1123344 222221 1246
Q ss_pred CcEEEEECCCCceEEEe
Q 020021 273 GSVYAWSVRSGKEVASW 289 (332)
Q Consensus 273 g~i~vWd~~~~~~~~~~ 289 (332)
|.+.-.|+.+++.+-..
T Consensus 366 G~l~AlD~~tG~~~W~~ 382 (488)
T cd00216 366 GGLAALDPKTGKVVWEK 382 (488)
T ss_pred eEEEEEeCCCCcEeeEe
Confidence 78888899888876654
No 349
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.99 E-value=0.19 Score=43.12 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=118.5
Q ss_pred hcccceeEecc-CCCcEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeeeEEeeecc-cceeEEEEccCCCEEEEecCC
Q 020021 22 QSMEVGMSFRD-YNGRISSMDFHKSSSYLVTASDDE--SIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKN 97 (332)
Q Consensus 22 ~~~~~~~~l~~-h~~~I~~i~~s~dg~~l~tgs~D~--tv~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~ 97 (332)
.+.+.++++.- .+.-..++.|..+|.++-|.|.-| +|+.+|+.+++.++...-.. .--..++...+ .++--.
T Consensus 31 ~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT-- 106 (264)
T PF05096_consen 31 YSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT-- 106 (264)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE--
T ss_pred eeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE--
Confidence 35666777763 334466899988888888888877 89999999998876554322 22233444433 332222
Q ss_pred CCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEE
Q 020021 98 GWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFA 177 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (332)
-.++...+||.++-+.+..+. ....=++++ .+++.|+.......+.++|.++-+....+..
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V---------------- 167 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV---------------- 167 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-----------------
T ss_pred ecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE----------------
Confidence 126788999999888777765 345667776 4666777666667888888766544333321
Q ss_pred EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC-------C
Q 020021 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-------S 250 (332)
Q Consensus 178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~ 250 (332)
.+-. .+ ...++.+.+- +|.+.|---....|...|..+|++...+..... .
T Consensus 168 ---------~~~g----~p---------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~ 224 (264)
T PF05096_consen 168 ---------TDNG----RP---------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK 224 (264)
T ss_dssp ---------EETT----EE------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT
T ss_pred ---------EECC----EE---------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc
Confidence 1100 00 0123334443 677777777788899999999998877643211 0
Q ss_pred -----CCcceEEEECCCC-CEEEEE
Q 020021 251 -----RNSTLEASFSPEG-MFVISG 269 (332)
Q Consensus 251 -----~~~~~~v~~spdg-~~l~sg 269 (332)
....+.+|+.|.. ++++||
T Consensus 225 ~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 225 SRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccCCeeEeEeEeCCCCEEEEEe
Confidence 2344679998765 455555
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.95 E-value=0.065 Score=39.43 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=59.0
Q ss_pred EEEEEEC---CCC-CEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCc
Q 020021 37 ISSMDFH---KSS-SYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK 112 (332)
Q Consensus 37 I~~i~~s---~dg-~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~ 112 (332)
|+++++. -|| +.|+.||.|..||+|+-+ +.+..+.... .|..++-... ..++++-. +++|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~---NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG-GRFAYALA---NGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC-CEEEEEec---CCEEEEEeCcc--
Confidence 5666653 343 679999999999999854 5555554433 4555554444 45666654 56777776522
Q ss_pred eEEEeecccccEEEEEecC---CC-CeEEEeeCCCcEE
Q 020021 113 YLRYFKGHHDRVVSLSLCS---SK-DCFISGSLDRTVL 146 (332)
Q Consensus 113 ~~~~~~~h~~~V~~v~~~~---~~-~~l~s~s~Dg~i~ 146 (332)
.+...+. +..++++++.. || ..|++|=.+|.|-
T Consensus 73 RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2233332 23356665543 22 2688887777654
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.90 E-value=0.3 Score=43.79 Aligned_cols=176 Identities=11% Similarity=0.101 Sum_probs=94.1
Q ss_pred cEEEEEcCCCeeeEEeeecccc-eeE---EEEccC----CCEEEEecCC--C----CC-ceeEEEEccCC----ceEEEe
Q 020021 57 SIRLYDVTAATCLKTINSKKYG-VDL---VCFTSH----PTTVIYSSKN--G----WD-ESLRLLSLHDN----KYLRYF 117 (332)
Q Consensus 57 tv~iwd~~~~~~~~~~~~~~~~-v~~---~~~~~~----~~~~~~~s~~--g----~d-~~v~v~d~~~~----~~~~~~ 117 (332)
.|++.|..+.+.+.++...... +.+ +.+..+ ...++.|..- + .. +.+.++++... ..++.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888888877666543322 222 333332 3455555321 1 12 77999998874 223222
Q ss_pred --ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCce-EEEEEEec--CceeEEEcCCCeEEEEEeCCEEEEEECccC
Q 020021 118 --KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQ--GRPAAAYDDQGLVFAVAFGGYIRMFDARKY 192 (332)
Q Consensus 118 --~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~ 192 (332)
....++|++++-. .++ |+.+. .+.|.+|++...+ ....-... .........+..++.+....-+.++..+.
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~- 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE- 158 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET-
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc-
Confidence 3456789988755 344 44333 3789999987776 44332222 11111112233444444445555553322
Q ss_pred CCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEcc
Q 020021 193 EKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF 236 (332)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~ 236 (332)
....+....-......+.++.|-+|++.++++..+|.+.++...
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 11123333322233456778888676799999999999998865
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.85 E-value=0.28 Score=42.75 Aligned_cols=227 Identities=11% Similarity=0.144 Sum_probs=117.1
Q ss_pred CCCCEEEEEeCCCcEEEEEcC-CCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE------
Q 020021 44 KSSSYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY------ 116 (332)
Q Consensus 44 ~dg~~l~tgs~D~tv~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~------ 116 (332)
..++.|+.|..|| +.+++.. .....+.... ..|..+...+.-+.++.-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc----CCccEEEEchhhccccccccccc
Confidence 4578888898888 9999983 2222222222 2377777777777666654 57899999865433221
Q ss_pred --------eecccccEEEEE--ecCCCCeEEEeeCCCcEEEEeCCCc-----eEEEEEEecCcee-EEEcCCCeEEEEEe
Q 020021 117 --------FKGHHDRVVSLS--LCSSKDCFISGSLDRTVLLWDQRAE-----KCQGLLRVQGRPA-AAYDDQGLVFAVAF 180 (332)
Q Consensus 117 --------~~~h~~~V~~v~--~~~~~~~l~s~s~Dg~i~iWd~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 180 (332)
-......+...+ -...+...+.....++|.+|.+... +....+.++..+. ..+. +..+.++.
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 011222333333 1123334444445568888887553 2334455554332 2222 34445555
Q ss_pred CCEEEEEECccCCCCCeeEEEecC----------CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCC
Q 020021 181 GGYIRMFDARKYEKGPFDIFSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 250 (332)
Q Consensus 181 ~~~i~vwd~~~~~~~~~~~~~~~~----------~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 250 (332)
.+...+.|+.+.....+ ..... ...++..+..+ ++.++++.. ..-...| ..|+..+.... .-
T Consensus 156 ~~~f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~--~~g~fv~-~~G~~~r~~~i--~W 227 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD--NIGVFVN-KNGEPSRKSTI--QW 227 (275)
T ss_pred CCceEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEEeC-CceEEEEec--ceEEEEc-CCCCcCcccEE--Ec
Confidence 66677777764332211 11111 01123333333 456555432 2222333 34543331111 01
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM 290 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~ 290 (332)
......+++ ...||+..+.+ .|.||++.+++.+..+.
T Consensus 228 ~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 228 SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 123334555 33588877764 49999999999887764
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.0079 Score=57.21 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=77.9
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEee---ecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc-
Q 020021 209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN---VKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK- 284 (332)
Q Consensus 209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~- 284 (332)
+..+.+|++..++|+|+..|.|.++-+..+....... ....|...|++++|++|+..+++|..-|.|.+-.+....
T Consensus 79 ~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~ 158 (726)
T KOG3621|consen 79 TCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA 158 (726)
T ss_pred EEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh
Confidence 4456788999999999999999999876633221111 112246788999999999999999999999998887621
Q ss_pred ---eEEEecCCCCCCceEEeCCCeeEEEeccceEEEeccccccc
Q 020021 285 ---EVASWMSFDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKL 325 (332)
Q Consensus 285 ---~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~ 325 (332)
....++...++|-.|.. -++.+|++...-..++..+.++.
T Consensus 159 ~~~~~q~il~~ds~IVQlD~-~q~~LLVStl~r~~Lc~tE~eti 201 (726)
T KOG3621|consen 159 FLSKSQEILSEDSEIVQLDY-LQSYLLVSTLTRCILCQTEAETI 201 (726)
T ss_pred hccccceeeccCcceEEeec-ccceehHhhhhhhheeecchhHH
Confidence 12334455566655553 34566666655555555444433
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.01 Score=55.78 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=69.8
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcce-EEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~ 286 (332)
.+..+.++|.-.++|.++.+|.+-+..+. .+.+-++ +.+...++ +++|.|||+.||.|=.||+|++-|+.++..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti---p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI---PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEec---cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45668899999999999999988877654 3433333 23444444 8999999999999999999999999999887
Q ss_pred EEe-cCCCCCCceEEeCC
Q 020021 287 ASW-MSFDTEPPVIKWTP 303 (332)
Q Consensus 287 ~~~-~~~~~~v~~l~~sp 303 (332)
... ......|.++-|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 763 23345677777764
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.73 E-value=0.32 Score=41.76 Aligned_cols=198 Identities=12% Similarity=0.148 Sum_probs=101.2
Q ss_pred EeecccccEEEEEecCCCCeEEEe-eCCCcEEEEeCCCceEEEEEEecC---ceeEEEcCCCeEEEEEe-CCEEEEEECc
Q 020021 116 YFKGHHDRVVSLSLCSSKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGLVFAVAF-GGYIRMFDAR 190 (332)
Q Consensus 116 ~~~~h~~~V~~v~~~~~~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~vwd~~ 190 (332)
.+.+-.+.+.++.|.|+.+.|++. ...+.|...+. .++.+..+...+ .....+-.++.++.... ++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455666779999999987755555 55667766675 466666665543 23445555555554442 6788888773
Q ss_pred cCC----CCCeeEEEecC---CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC---CeEeEEeee-----cCCCCCcce
Q 020021 191 KYE----KGPFDIFSVGG---DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLSTYNV-----KPVSRNSTL 255 (332)
Q Consensus 191 ~~~----~~~~~~~~~~~---~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~---~~~~~~~~~-----~~~~~~~~~ 255 (332)
... ......+.+.. .......++++|.+..++++-......++.... +..+..... .........
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 11122233222 123578899999877776776666656655442 211111110 111223345
Q ss_pred EEEECCC-CCEEEEEcCCCcEEEEECCCCceEEEecCCC---------CCCceEEeCCCeeEEEeccceE
Q 020021 256 EASFSPE-GMFVISGSGDGSVYAWSVRSGKEVASWMSFD---------TEPPVIKWTPGSLMFVTGSSEL 315 (332)
Q Consensus 256 ~v~~spd-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~---------~~v~~l~~sp~~~~l~t~~~d~ 315 (332)
.+++.|. |.+++-......|-+.| .+|+.+..+.-.. ...-.|+|.|+|++.++.-..+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNl 243 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNL 243 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCce
Confidence 7888886 45666667778899999 5677655442111 2345699999999888876553
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.42 Score=42.44 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=65.1
Q ss_pred CceeEEEcCCCCEEEEE-cCCCeEEEEEccC--CeEeEE--eeecCCCCCcceEEEECCCCCEEEEEcCCC-cEEEEECC
Q 020021 208 DANVVKFSNDGRLMLLT-TMEGHIHVLDSFR--GTLLST--YNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVR 281 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~-~~dg~i~i~d~~~--~~~~~~--~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-~i~vWd~~ 281 (332)
-.+.++||||++.+..+ +..+.|+.++... +..-.. +..........-..+...+|++.+++-.+| .|.+|+..
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 34789999999655554 5668899988752 211110 111111122222456677888887665555 89999987
Q ss_pred CCceEEEecCCCCCCceEEeC-CCe-eEEEeccc
Q 020021 282 SGKEVASWMSFDTEPPVIKWT-PGS-LMFVTGSS 313 (332)
Q Consensus 282 ~~~~~~~~~~~~~~v~~l~~s-p~~-~~l~t~~~ 313 (332)
++.+......-..+++++|- |+. .+++|+..
T Consensus 244 -G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 244 -GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred -CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 88887765554678889984 443 45566543
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.66 E-value=0.081 Score=52.53 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=62.4
Q ss_pred EEEEcCCCeEEEEEccCCe--EeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE-EEecCCCCCCc
Q 020021 221 MLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV-ASWMSFDTEPP 297 (332)
Q Consensus 221 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~-~~~~~~~~~v~ 297 (332)
...|-.+..+..||++... ++..-.......+...+++-+.+| +||.||.+|.||++|- .++.- ..+.+...+|.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPII 622 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCee
Confidence 4566677788999987632 221111011122333445555555 7888999999999995 34433 33567788999
Q ss_pred eEEeCCCeeEEEeccce-EEEec
Q 020021 298 VIKWTPGSLMFVTGSSE-LSFWI 319 (332)
Q Consensus 298 ~l~~sp~~~~l~t~~~d-~~~w~ 319 (332)
.|.-+.||+++++.+.. +.+.+
T Consensus 623 ~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 623 GIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred EEEecCCCcEEEEeecceEEEEE
Confidence 99999999988776665 44443
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0087 Score=59.61 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=74.6
Q ss_pred EEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCC
Q 020021 213 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSF 292 (332)
Q Consensus 213 ~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~ 292 (332)
+...-+..++.++..|++-.+|.... +..+........++.+++|+.||+.++.|=.+|-|.+||+..++.++.+.-|
T Consensus 94 s~a~~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 94 SSAIVVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeeeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 33334566888999999999887642 1111111123467889999999999999999999999999999988888777
Q ss_pred CCCCceEE---eCCCeeEEEeccceEEEecc
Q 020021 293 DTEPPVIK---WTPGSLMFVTGSSELSFWIP 320 (332)
Q Consensus 293 ~~~v~~l~---~sp~~~~l~t~~~d~~~w~~ 320 (332)
.++.+.+- +..++..+.++.....+|..
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 77665543 33344456666555557754
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.53 Score=43.34 Aligned_cols=245 Identities=14% Similarity=0.170 Sum_probs=139.6
Q ss_pred EEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCC-eE
Q 020021 58 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD-CF 136 (332)
Q Consensus 58 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~-~l 136 (332)
+.+++..+......+..+. ....+...+.+..+...... ...+...+............-...-.++++++.++ ..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~--~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSG--SNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeec--CceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence 6666666555554444333 34456777788776665432 22444444332111111111112234677778776 55
Q ss_pred EEeeCCCcEEEEeCCCceEEEEEEecCc-eeEEEcCCCeEEEEE-e---CCEEEEEECccCCCCCeeEEEecCCCCCcee
Q 020021 137 ISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFAVA-F---GGYIRMFDARKYEKGPFDIFSVGGDISDANV 211 (332)
Q Consensus 137 ~s~s~Dg~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 211 (332)
++...+..|.+-|..+.+.......... ....+++++..+.++ . ++.+.+.|...... ......+. .+ ..
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~~~~~vG~--~P-~~ 164 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--TATIPVGN--TP-TG 164 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--EEEEecCC--Cc-ce
Confidence 6666678999999887777665544322 245556555333322 2 46777777654321 11122211 12 67
Q ss_pred EEEcCCCCEE-EEEcCCCeEEEEEccCCeEeEEeee--cCCCCCcceEEEECCCCCEEEEEcCC---CcEEEEECCCCce
Q 020021 212 VKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGD---GSVYAWSVRSGKE 285 (332)
Q Consensus 212 v~~s~dg~~l-~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~v~~spdg~~l~sgs~D---g~i~vWd~~~~~~ 285 (332)
++++|+|..+ ++...++.|.++|........ ... ..........++++|||.++...-.. +.+.+.|..++..
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 8999999854 455688999999976655442 110 00111233468999999976666433 5899999988776
Q ss_pred EEEecCCCC-CCceEEeCCCeeEEEec
Q 020021 286 VASWMSFDT-EPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 286 ~~~~~~~~~-~v~~l~~sp~~~~l~t~ 311 (332)
...-..... ....+..+|+|+.+-..
T Consensus 244 ~~~~~~~~~~~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 244 TATDLPVGSGAPRGVAVDPAGKAAYVA 270 (381)
T ss_pred EEeccccccCCCCceeECCCCCEEEEE
Confidence 554222222 45678889998766544
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.63 E-value=0.36 Score=41.07 Aligned_cols=70 Identities=9% Similarity=-0.032 Sum_probs=50.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEEee
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFK 118 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~ 118 (332)
|++++-|.+.+.+.+-++++|++...+.....--......+++..+..++. |++....|..+..++...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccceEEecc
Confidence 677889999999999999999887766544321122345566666776654 8889999998887776654
No 361
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.57 E-value=0.00076 Score=63.23 Aligned_cols=191 Identities=15% Similarity=0.232 Sum_probs=109.0
Q ss_pred cEEEEEecCCCC--eEEEeeCCCcEEEEeCCCceEEE-EE-EecCcee--EEEcC-CCeEEEEEe-----CCEEEEEECc
Q 020021 123 RVVSLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQG-LL-RVQGRPA--AAYDD-QGLVFAVAF-----GGYIRMFDAR 190 (332)
Q Consensus 123 ~V~~v~~~~~~~--~l~s~s~Dg~i~iWd~~~~~~~~-~~-~~~~~~~--~~~~~-~~~~~~~~~-----~~~i~vwd~~ 190 (332)
.+.+++...+.+ .++.|..+|.|-+-..+...-.. .+ .....++ .++.+ +...++++. +..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456666555443 56778888998887765443221 11 1111111 12222 334555554 3579999987
Q ss_pred cCCCCCeeEEEecC-CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCe-EeEEeeecCCCCCcceEEEECC-CCCEEE
Q 020021 191 KYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSP-EGMFVI 267 (332)
Q Consensus 191 ~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~v~~sp-dg~~l~ 267 (332)
.....|+......+ .....+++++-.+.+++++|...+.++++|++... ....+ .+..+..+..+| .+.|++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----hhhhcccceecCCCCCcee
Confidence 65433433322222 23456678888888999999999999999987322 11111 122333466777 677887
Q ss_pred EEcCCCcEEEEEC-CCCc-eEEEec----CCCCCCceEEeCCCee-EEEeccce---EEEec
Q 020021 268 SGSGDGSVYAWSV-RSGK-EVASWM----SFDTEPPVIKWTPGSL-MFVTGSSE---LSFWI 319 (332)
Q Consensus 268 sgs~Dg~i~vWd~-~~~~-~~~~~~----~~~~~v~~l~~sp~~~-~l~t~~~d---~~~w~ 319 (332)
+-+ ||.|-+||. .+-+ .+..+. .-...+..++|.|... ++++-..| +++.+
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 765 999999993 3322 111111 1223478899999653 44444433 44444
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.57 E-value=0.00071 Score=63.42 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=117.5
Q ss_pred cEEEEEEC--CCCCEEEEEeCCCcEEEEEcCCCee--eEEeeecccceeEEEEccCCCEEEEecCC--CCCceeEEEEcc
Q 020021 36 RISSMDFH--KSSSYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH 109 (332)
Q Consensus 36 ~I~~i~~s--~dg~~l~tgs~D~tv~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--g~d~~v~v~d~~ 109 (332)
.+.|++.. .+..+++.|..+|.|-+=.+....- -.....+....+.++|.+-...+++++.+ -.|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 35566554 3345788899999988876643211 12233444556777887764444433221 125679999998
Q ss_pred CC--ceEE--Eeec-ccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceE-EEEEEecCceeEEEcC-CCeEEEEEeCC
Q 020021 110 DN--KYLR--YFKG-HHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDD-QGLVFAVAFGG 182 (332)
Q Consensus 110 ~~--~~~~--~~~~-h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (332)
++ .+.. .|.+ -.....+++|-.+.+.|.+|..-+.+++.|++.... ...+....+.....+| .+.+++...++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg 217 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG 217 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC
Confidence 76 2211 1222 334455788888889999999999999999874321 1122222223344455 56777777899
Q ss_pred EEEEEE-CccCCCCCeeEEEecC--CCCCceeEEEcCCC--CEEEEEcCCCeEEEEEcc
Q 020021 183 YIRMFD-ARKYEKGPFDIFSVGG--DISDANVVKFSNDG--RLMLLTTMEGHIHVLDSF 236 (332)
Q Consensus 183 ~i~vwd-~~~~~~~~~~~~~~~~--~~~~v~~v~~s~dg--~~l~~~~~dg~i~i~d~~ 236 (332)
.|.+|| .++.+. ++....... ....+..+++.|.. ...+..-..++|+.+|+.
T Consensus 218 ~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 218 DIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999999 443322 111111000 01136678888854 333444566899999974
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.48 E-value=0.012 Score=36.20 Aligned_cols=30 Identities=17% Similarity=0.436 Sum_probs=27.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDV 63 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~ 63 (332)
...|.+++|+|..++||.|..||.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 356999999999999999999999999998
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.46 E-value=0.021 Score=51.98 Aligned_cols=94 Identities=20% Similarity=0.370 Sum_probs=61.2
Q ss_pred cCCCCEEEEEc---------CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021 215 SNDGRLMLLTT---------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 215 s~dg~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
|||+++++... ..+.+.++|+.+++....... ........|||||+++|-.. ++.|++++..+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP----PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E----ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC----ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 67777776633 235789999998765543221 24455789999999999884 78999999877643
Q ss_pred EEEecCCC------------------CCCceEEeCCCeeEEEeccce
Q 020021 286 VASWMSFD------------------TEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 286 ~~~~~~~~------------------~~v~~l~~sp~~~~l~t~~~d 314 (332)
. .++... ..-..+-||||+++|+...-|
T Consensus 76 ~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 76 T-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp E-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred E-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3 222111 123568899999999887654
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.42 E-value=0.8 Score=42.59 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=99.8
Q ss_pred EEECCCCCEEEEEeCC-----------CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 40 MDFHKSSSYLVTASDD-----------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 40 i~~s~dg~~l~tgs~D-----------~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
++.+|.|..+|..-.+ ..|+||+.. |+.+.++......+..+.|+.+...++... |+.++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~----dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQS----DGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEc----CCEEEEEeC
Confidence 3446666666655444 158999865 667777766556788889988665555543 789999998
Q ss_pred cCCceEEEe-------ecccccEEEEEecCCCCeEEEeeCCCcEEEEe-CCCceEEEEE-EecCc---------e--eEE
Q 020021 109 HDNKYLRYF-------KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLL-RVQGR---------P--AAA 168 (332)
Q Consensus 109 ~~~~~~~~~-------~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd-~~~~~~~~~~-~~~~~---------~--~~~ 168 (332)
.... ...+ .-....+....+..+|-.+.|. ++.+.+-+ .........+ ..+.. . ...
T Consensus 109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred CCce-eechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6332 1111 1111222222333344334443 23333221 2111000000 00000 0 001
Q ss_pred EcC-CCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeee
Q 020021 169 YDD-QGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 246 (332)
Q Consensus 169 ~~~-~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 246 (332)
+.. ....+....++.+.+.+....+. +. ...++..+++||+|+++|.-..+|.+.+....-.+.+.++..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ-------ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc-------cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 111 12233334445555444322100 10 124688899999999999999999999988766666555543
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.42 E-value=0.8 Score=42.56 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=105.6
Q ss_pred eEEEEccCCCEEEEec-CCCCC-ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCC-----------cEE
Q 020021 80 DLVCFTSHPTTVIYSS-KNGWD-ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDR-----------TVL 146 (332)
Q Consensus 80 ~~~~~~~~~~~~~~~s-~~g~d-~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg-----------~i~ 146 (332)
...+++|+++.++++. .+|.| ..+++.|+++++.+...-.... -..+.|.++++.|+....|. .|.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3578899999988763 33432 4699999999976543211111 12389999988877666544 277
Q ss_pred EEeCCCceEE--EEEEecC----ceeEEEcCCCeEEEEE-e---C-CEEEEEECccC--CCCCeeEEEecCCCCCceeEE
Q 020021 147 LWDQRAEKCQ--GLLRVQG----RPAAAYDDQGLVFAVA-F---G-GYIRMFDARKY--EKGPFDIFSVGGDISDANVVK 213 (332)
Q Consensus 147 iWd~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~-~---~-~~i~vwd~~~~--~~~~~~~~~~~~~~~~v~~v~ 213 (332)
+|.+.+.... ..+.... ...+..+.++.++.+. . + ..+.+.|+... .......+.. ....+....
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--~~~~~~~~v 283 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--REDGVEYYV 283 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--SSSS-EEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--CCCceEEEE
Confidence 7777654322 2333322 1233445555544433 2 2 45777777653 1112222221 122232222
Q ss_pred EcCCCCEEEEEcC---CCeEEEEEccCCeE---eEEeeecCCCCCcceEEEECCCC-CEEEEEcCCC--cEEEEECCCCc
Q 020021 214 FSNDGRLMLLTTM---EGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDG--SVYAWSVRSGK 284 (332)
Q Consensus 214 ~s~dg~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~v~~spdg-~~l~sgs~Dg--~i~vWd~~~~~ 284 (332)
....+.+++.... ++.|...++..... ...+- .+...+.-..+...+ ..++.--.++ .|+++++..+.
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 2334455544432 35676677766542 11111 112212222333444 4444445555 78899998233
Q ss_pred eEEEe-cCCCCCCceEEeCCCe
Q 020021 285 EVASW-MSFDTEPPVIKWTPGS 305 (332)
Q Consensus 285 ~~~~~-~~~~~~v~~l~~sp~~ 305 (332)
..... ..-.+.+..+...+++
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~ 382 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDS 382 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-
T ss_pred EEeeecCCcceEEeccCCCCCC
Confidence 33332 2222334455545544
No 367
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.39 E-value=0.27 Score=47.63 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=80.3
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEE--CCCCCEEEEEcCCCcEEEEECC----
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVISGSGDGSVYAWSVR---- 281 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~--spdg~~l~sgs~Dg~i~vWd~~---- 281 (332)
...-+..|.-++..++.....++.|||...+.+..+-.. .....|..+.| .|||+.+++.|-...|.++.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344556666777777777777999999998876544332 23456667765 5899999999999999998431
Q ss_pred -CC----ceEEE--ecCCC-CCCceEEeCCCeeEEEeccceEEEeccccc
Q 020021 282 -SG----KEVAS--WMSFD-TEPPVIKWTPGSLMFVTGSSELSFWIPDLS 323 (332)
Q Consensus 282 -~~----~~~~~--~~~~~-~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~ 323 (332)
+. ..+.. +..|+ .+|.+..|.++|.+++..+....+.+....
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD 158 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence 11 12222 23343 468999999999999999998888775443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.27 Score=45.85 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=82.9
Q ss_pred CceeEEEEccCCceEEEeecccccEEEEEecCCCC--eEE-----EeeCCCcEEEEeCCCceEE--EEEEecC------c
Q 020021 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKD--CFI-----SGSLDRTVLLWDQRAEKCQ--GLLRVQG------R 164 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~--~l~-----s~s~Dg~i~iWd~~~~~~~--~~~~~~~------~ 164 (332)
...+.-.|++.|+.+...+-|.+ |+-+.+.|+.+ .+. -|=.|..|.-||++-+... ...+.+. .
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 35577789999999998888877 78888888765 332 3445788899998754331 1111111 1
Q ss_pred eeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEc
Q 020021 165 PAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS 235 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~ 235 (332)
.+..-..+|.++.++.+|.||+||-. ....+..+. +--.+|.-|..+.||+.+++.+. ..+.+.|.
T Consensus 434 sc~aTT~sG~IvvgS~~GdIRLYdri-~~~AKTAlP---gLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 434 SCFATTESGYIVVGSLKGDIRLYDRI-GRRAKTALP---GLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ceeeecCCceEEEeecCCcEEeehhh-hhhhhhccc---ccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 23344467788888889999999952 222221111 22246778899999998776554 45555554
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.0073 Score=58.69 Aligned_cols=106 Identities=12% Similarity=0.223 Sum_probs=79.9
Q ss_pred EEEcCCCCEEEEEc----CCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE
Q 020021 212 VKFSNDGRLMLLTT----MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA 287 (332)
Q Consensus 212 v~~s~dg~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~ 287 (332)
..++|...++++++ ..|.|.||- .+|++...... |. .+.+++|+|..-.||.|-+-|.+.+|...+.+.-.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ce---ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 45667777666654 346788874 67776543332 22 23468999999999999999999999988776655
Q ss_pred EecCCCCCCceEEeCCCeeEEEeccce--EEEecccc
Q 020021 288 SWMSFDTEPPVIKWTPGSLMFVTGSSE--LSFWIPDL 322 (332)
Q Consensus 288 ~~~~~~~~v~~l~~sp~~~~l~t~~~d--~~~w~~~~ 322 (332)
....|+.++..+.|||+|..++|+..- +.+|..+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 567899999999999999999998753 88887763
No 370
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.017 Score=47.90 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-eeeEEeeecccceeEEEEccCCCE--EEEecCCCCCceeEEEEccCCceEEEeeccc-
Q 020021 46 SSYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYLRYFKGHH- 121 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~--~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~- 121 (332)
+.-++.|+.|+.|.+|....- .....+..... ...+..|.++. +.+. ..+|+.||.|+++-++.+....+|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e--~i~~~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE--SIDLGIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccc--cceeccccccccceeEE--eccCCceeeeccccCceeeeeccccC
Confidence 456788999999999987621 11111111111 12233444443 3333 3568999999999988887777787
Q ss_pred ccEEEEEecCCCCeEEEe--eCCCcEEEEeCCC
Q 020021 122 DRVVSLSLCSSKDCFISG--SLDRTVLLWDQRA 152 (332)
Q Consensus 122 ~~V~~v~~~~~~~~l~s~--s~Dg~i~iWd~~~ 152 (332)
.++........++.++.+ |.|..++.|++..
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 566666666666777777 7777777777653
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.021 Score=35.11 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021 251 RNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286 (332)
Q Consensus 251 ~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~ 286 (332)
...+..++|+|....||.|+.||.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 345678899999999999999999999998 66554
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.99 E-value=0.42 Score=35.24 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=39.8
Q ss_pred EEEEEecC-CC---CeEEEeeCCCcEEEEeCCCceEEEEEEecCcee-EEEcCCCeEEEEEeCCEEEEEEC
Q 020021 124 VVSLSLCS-SK---DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFAVAFGGYIRMFDA 189 (332)
Q Consensus 124 V~~v~~~~-~~---~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~vwd~ 189 (332)
|++++++. ++ +.|+.||.|..||+|+- ...+..+....... ......+.+..+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 56666654 32 58999999999999963 34444554444333 23334455555556788877764
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.98 E-value=1.7 Score=42.36 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=89.3
Q ss_pred ccEEEEEecCCCCeEEEee------CCCcEEEE--eCCCceEEEEEEecCceeEEEcCCCe-EEEEEeC-----------
Q 020021 122 DRVVSLSLCSSKDCFISGS------LDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGL-VFAVAFG----------- 181 (332)
Q Consensus 122 ~~V~~v~~~~~~~~l~s~s------~Dg~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------- 181 (332)
..+...+++|+|+.++..- .|..-.+| +.... ............-.+++++. +.++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4678889999999876665 34444445 43222 22222222222345556533 3333221
Q ss_pred -CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE---EEccCCeE-e-EEeeecCCCCCcce
Q 020021 182 -GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV---LDSFRGTL-L-STYNVKPVSRNSTL 255 (332)
Q Consensus 182 -~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i---~d~~~~~~-~-~~~~~~~~~~~~~~ 255 (332)
+.+.+.++...... . .....+..+.+||||..++... +|+|++ -....|+. + ............+.
T Consensus 429 ~gql~~~~vd~ge~~---~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 429 TGQLARTPVDASAVA---S----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CceEEEEeccCchhh---h----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 22222233211100 0 0123588999999999887765 578877 44444541 1 11112122223346
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC-CceEEEecC--CCCCCceEEeCCCeeEEEe
Q 020021 256 EASFSPEGMFVISGSGDGSVYAWSVRS-GKEVASWMS--FDTEPPVIKWTPGSLMFVT 310 (332)
Q Consensus 256 ~v~~spdg~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~--~~~~v~~l~~sp~~~~l~t 310 (332)
.++|.+++..+ .+..++.-.+|.+.- |.....+.. ...++..|+=+|+ .++++
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~ 556 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVT 556 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEE
Confidence 78999999855 555555555665532 222222122 2455667776764 34444
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.035 Score=55.51 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=59.8
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.+|.+++|+.||+.++.|-.+|.|.+||+..+..++.+..+..+...+.-+.+..++..++++..-|. +|.+
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 57899999999999999999999999999998888877655555556666778888888999988886 5654
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.061 Score=50.83 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=63.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccccee-EEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
.|.-+.|+|.-.++|++-.+|.+.+..++ ...+.++..+.-.+. ++||.|+|+.++.+-. |++|++.|++.+..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeEEEEEccCCCce
Confidence 36678899999999999999999999888 667777775655555 8999999999998876 789999999887544
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.65 E-value=0.13 Score=49.94 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=56.2
Q ss_pred CceeEEEcCCCCEEEEEc------CCC--eEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-------
Q 020021 208 DANVVKFSNDGRLMLLTT------MEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------- 272 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D------- 272 (332)
.+...++||||+.++... .|+ .+.+++.. +.. ..+.. ......-.|+|||+.|++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~----g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE----GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec----CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 567789999999887655 233 56666642 222 22211 1123455899999988887532
Q ss_pred -----CcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021 273 -----GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 273 -----g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~ 311 (332)
+.+++.++..++... .....|..+.|||||..++..
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEE
Confidence 223322333322211 335679999999999866553
No 377
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.59 E-value=1.6 Score=39.01 Aligned_cols=266 Identities=12% Similarity=0.083 Sum_probs=144.5
Q ss_pred CcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCC---C----CCceeEEEEccCCceEEEee---cccc---
Q 020021 56 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---G----WDESLRLLSLHDNKYLRYFK---GHHD--- 122 (332)
Q Consensus 56 ~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~---g----~d~~v~v~d~~~~~~~~~~~---~h~~--- 122 (332)
+++.++|.++++.+-.+...-.+ .+.++|+++.++.+..- + ....|.+||.++-.....+. .|..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 37899999999988777654322 35678999888765320 1 13458899998876554332 1111
Q ss_pred -cEEEEEecCCCCeEEE--eeCCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeE
Q 020021 123 -RVVSLSLCSSKDCFIS--GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDI 199 (332)
Q Consensus 123 -~V~~v~~~~~~~~l~s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~ 199 (332)
......++.|++++.- .+---+|.+-|+..++...++..++-.......+..+.+.+.||.+....+...-+.....
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 1123456677775443 3445567777888887777776665433333334456667777776666554221111000
Q ss_pred EEec-CCCC-CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeE--eEEeeecCCC---CCc----ceEEEECCCCCEEEE
Q 020021 200 FSVG-GDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVS---RNS----TLEASFSPEGMFVIS 268 (332)
Q Consensus 200 ~~~~-~~~~-~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~---~~~----~~~v~~spdg~~l~s 268 (332)
-..- .... -...-+++..+..++.-+-+|.|+-.|+..... ...+...... .++ ---+++++..+.|+.
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 0000 0001 112223455555667788999999988765432 2222211000 010 012678765544443
Q ss_pred E---cCCC-------cEEEEECCCCceEEEecCCCCCCceEEeCCCee-EEEe--c-cceEEEecccccc
Q 020021 269 G---SGDG-------SVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSL-MFVT--G-SSELSFWIPDLSK 324 (332)
Q Consensus 269 g---s~Dg-------~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~t--~-~~d~~~w~~~~~~ 324 (332)
- +.+| .|-++|+.+++.+..+.. ..++.+|+.+.|.+ +|.+ . ..++.++++...+
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 2 2222 677889999999887653 23577899988875 4432 2 3468889875543
No 378
>PHA02713 hypothetical protein; Provisional
Probab=95.52 E-value=2.6 Score=40.95 Aligned_cols=70 Identities=4% Similarity=-0.032 Sum_probs=41.6
Q ss_pred cCCCCEEEEEcCCC------eEEEEEccC-CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC--cEEEEECCCCce
Q 020021 215 SNDGRLMLLTTMEG------HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVYAWSVRSGKE 285 (332)
Q Consensus 215 s~dg~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg--~i~vWd~~~~~~ 285 (332)
.-+|++++.|+.++ .+..||..+ .+-...-.. +........+++ +|+..+.|+.|| ++..+|..+.+.
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 44678888887542 467788876 332211111 111122222333 889999999998 788888877665
Q ss_pred EE
Q 020021 286 VA 287 (332)
Q Consensus 286 ~~ 287 (332)
..
T Consensus 538 ~~ 539 (557)
T PHA02713 538 NH 539 (557)
T ss_pred cc
Confidence 43
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=0.46 Score=44.38 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=64.1
Q ss_pred ceeEEEcCCCCE-------EEEEcCCCeEEEEEccCCeE--eEEeeecCCCC-CcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021 209 ANVVKFSNDGRL-------MLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSR-NSTLEASFSPEGMFVISGSGDGSVYAW 278 (332)
Q Consensus 209 v~~v~~s~dg~~-------l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~-~~~~~v~~spdg~~l~sgs~Dg~i~vW 278 (332)
++-+.+.||++. -+.|-.+..|.-||++-... +..-..+...+ +...+.+=. ...+++.||.+|-||++
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEee
Confidence 555666666532 24566777888899863221 11111110111 111222333 34588899999999999
Q ss_pred ECCCCce-EEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 279 SVRSGKE-VASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 279 d~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
|- .+.. -..+++...+|..|.-+.||+.++..+..
T Consensus 457 dr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 457 DR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred hh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 97 4444 34567888999999999999977666554
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.41 E-value=1.6 Score=37.68 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=112.4
Q ss_pred cEEEEEecCCCCeEEEeeCCC--cEEEEeCCCceEEEEEEecCce---eEEEcCCCeEEEEEe-CCEEEEEECccCCCCC
Q 020021 123 RVVSLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFAVAF-GGYIRMFDARKYEKGP 196 (332)
Q Consensus 123 ~V~~v~~~~~~~~l~s~s~Dg--~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~i~vwd~~~~~~~~ 196 (332)
..-++.|..++..+-|.|.-| .|+.+|+.+++......++... .... -+..++.... ++..-+||...++.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~-~~d~l~qLTWk~~~~f~yd~~tl~~-- 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI-LGDKLYQLTWKEGTGFVYDPNTLKK-- 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE-ETTEEEEEESSSSEEEEEETTTTEE--
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE-ECCEEEEEEecCCeEEEEccccceE--
Confidence 455788877888888888776 7999999999877666665432 1111 1345555664 57888888875432
Q ss_pred eeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--CCCcceEEEECCCCCEEEEEcCCCc
Q 020021 197 FDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGS 274 (332)
Q Consensus 197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg~ 274 (332)
...+...+ .. =.++ .||+.+..+.....++.+|..+-+....+..... .....+.+.| -+|...|-.-..-.
T Consensus 123 ~~~~~y~~--EG-WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~ 196 (264)
T PF05096_consen 123 IGTFPYPG--EG-WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDR 196 (264)
T ss_dssp EEEEE-SS--S---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSE
T ss_pred EEEEecCC--cc-eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCe
Confidence 22233222 11 2233 6777788888888999999988777666654311 1223445666 38888888877778
Q ss_pred EEEEECCCCceEEEec------------CC---CCCCceEEeCCC-eeEEEeccc
Q 020021 275 VYAWSVRSGKEVASWM------------SF---DTEPPVIKWTPG-SLMFVTGSS 313 (332)
Q Consensus 275 i~vWd~~~~~~~~~~~------------~~---~~~v~~l~~sp~-~~~l~t~~~ 313 (332)
|...|..+|+.+..+. .. ..-.+.+||.|. +++++||-.
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 9999999998766441 01 123477999875 577888753
No 381
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.33 E-value=1.9 Score=39.78 Aligned_cols=229 Identities=12% Similarity=0.134 Sum_probs=101.0
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeecc--------cceeEEEEcc-----CC-
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKK--------YGVDLVCFTS-----HP- 88 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~-----~~- 88 (332)
++...--+...+++|++++.|. =.++|.|..||++.|-|......+..-.-.. ..++.+.|.- ++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 3555555677799999999974 4599999999999999998777776532111 1244454441 11
Q ss_pred --CEEEEecCCCCCceeEEEEcc--C-CceEEEee----cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEE-E
Q 020021 89 --TTVIYSSKNGWDESLRLLSLH--D-NKYLRYFK----GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-L 158 (332)
Q Consensus 89 --~~~~~~s~~g~d~~v~v~d~~--~-~~~~~~~~----~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~-~ 158 (332)
..++.+.. .+.+.+|.+- . +.....+. .|.++|..+. ..|..++.... .
T Consensus 154 SSi~L~vGTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At 212 (395)
T PF08596_consen 154 SSICLLVGTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALAT 212 (395)
T ss_dssp EEEEEEEEET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-B
T ss_pred cceEEEEEeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCc
Confidence 12333332 2345555432 1 11111110 1112222221 11222221100 0
Q ss_pred E-EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEE-----cCCCCEEEEEcCCCeEEE
Q 020021 159 L-RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKF-----SNDGRLMLLTTMEGHIHV 232 (332)
Q Consensus 159 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~-----s~dg~~l~~~~~dg~i~i 232 (332)
. .+..... . ..-..++.+.....+|++...+.+. ..... ........+++ ...+..|++-..+|.|++
T Consensus 213 ~~~~~~l~~-g-~~i~g~vVvvSe~~irv~~~~~~k~---~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 213 ISAMQGLSK-G-ISIPGYVVVVSESDIRVFKPPKSKG---AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp HHHHHGGGG-T-----EEEEEE-SSEEEEE-TT---E---EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred hhHhhcccc-C-CCcCcEEEEEcccceEEEeCCCCcc---cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 0 0000000 0 0011244455677888887654321 11111 11111223334 235677788899999999
Q ss_pred EEccCCeEeEEeeecC-CCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 233 LDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 233 ~d~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
+-+-.-+.+....... ...+......|+++|..++-.|... +.++.+
T Consensus 287 ~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE-~~l~sv 334 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE-IQLFSV 334 (395)
T ss_dssp EETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE-EEEEEE
T ss_pred EECCCchHhhcccCCCccccccccccEECCCCCEEEEeCccc-EEEEEE
Confidence 9998877776665421 1222344578899999887765433 444433
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.95 E-value=4.8 Score=40.76 Aligned_cols=285 Identities=10% Similarity=0.140 Sum_probs=141.9
Q ss_pred cCCCcEEEEEECCCC---C---EEEEEeCCCcEEEEEcCCCeeeEE---eeec--ccceeEEEEccCCCEEEEecCCCCC
Q 020021 32 DYNGRISSMDFHKSS---S---YLVTASDDESIRLYDVTAATCLKT---INSK--KYGVDLVCFTSHPTTVIYSSKNGWD 100 (332)
Q Consensus 32 ~h~~~I~~i~~s~dg---~---~l~tgs~D~tv~iwd~~~~~~~~~---~~~~--~~~v~~~~~~~~~~~~~~~s~~g~d 100 (332)
..+.+|.|+.++|-| + +++.|.++..+.+--....-++.. +... +..+-..++-.+..+++.+.. |
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalg---d 604 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALG---D 604 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcC---C
Confidence 345779999999753 3 789999998877765543333222 2221 112333445444556666553 5
Q ss_pred ceeEEE--EccCCceE--EEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCce-eEEEcCC--C
Q 020021 101 ESLRLL--SLHDNKYL--RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQ--G 173 (332)
Q Consensus 101 ~~v~v~--d~~~~~~~--~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~--~ 173 (332)
+.+.-+ |..++..- +.-.--+.++.=-.|+..++.-+-+..|+-..++..+..-+...+.+.... .+.+..+ +
T Consensus 605 G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 605 GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYP 684 (1096)
T ss_pred ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCC
Confidence 666654 45554421 111112334444456555555555556666666654333222222222111 1112111 1
Q ss_pred eEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcC-----------CC---eEEEEEccCCe
Q 020021 174 LVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTM-----------EG---HIHVLDSFRGT 239 (332)
Q Consensus 174 ~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~-----------dg---~i~i~d~~~~~ 239 (332)
--++.+..+.+++..+...+.-......+. ...+.+++.+....+.+.+. +. .++++|-.+-+
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvpl~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVPLG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeecCC---CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 233444566677765543221111122222 23445566553333333222 11 36666666555
Q ss_pred EeEEeeecC-CCCCcceEEEECCC-CCEEEEEcC----------CCcEEEEECCCCceEEEec--CCCCCCceEEeCCCe
Q 020021 240 LLSTYNVKP-VSRNSTLEASFSPE-GMFVISGSG----------DGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGS 305 (332)
Q Consensus 240 ~~~~~~~~~-~~~~~~~~v~~spd-g~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp~~ 305 (332)
.++..+... ...-.+.++.|.-| +.+++.|.. .|.|.|+.+..++.+.... ...+.+.++. --+|
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fng 840 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNG 840 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCC
Confidence 544332211 01123334558777 777777753 4677777776644333321 1233344443 2378
Q ss_pred eEEEeccceEEEeccccc
Q 020021 306 LMFVTGSSELSFWIPDLS 323 (332)
Q Consensus 306 ~~l~t~~~d~~~w~~~~~ 323 (332)
+++|.-...++++.|-..
T Consensus 841 kllA~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 841 KLLAGINQSVRLYEWTTE 858 (1096)
T ss_pred eEEEecCcEEEEEEcccc
Confidence 899988888999999776
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.93 E-value=0.12 Score=43.02 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCeEEEEEccC-CeEeEEeeecCCCCCcc-eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCC-C
Q 020021 218 GRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNST-LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFD-T 294 (332)
Q Consensus 218 g~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~-~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~-~ 294 (332)
+..+++|+.+|.|++|.... |.....+. .....+ .-+.-..++.+..++..||.||.|++...+.+.....|+ .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~---s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC---SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh---cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 46689999999999998641 11111111 111111 112233456688899999999999999888777666666 3
Q ss_pred CCceEEeCCCeeEEEec--cce--EEEecc
Q 020021 295 EPPVIKWTPGSLMFVTG--SSE--LSFWIP 320 (332)
Q Consensus 295 ~v~~l~~sp~~~~l~t~--~~d--~~~w~~ 320 (332)
+...+.-+..++.++.+ |.+ +++|+.
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcch
Confidence 33333334444444444 444 555644
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.52 E-value=2 Score=37.32 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=41.4
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEEcCCC-eeeEEeeecccceeEEEEccCCCEEEEec
Q 020021 41 DFHKSSSYLVTASDD-----ESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 41 ~~s~dg~~l~tgs~D-----~tv~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 95 (332)
.|||||.+|...=.| |-|-|||...+ ..+..+..|.-+.+.+.+.+++..++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 489999998665444 67899998743 33456777777778899999999888764
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.29 E-value=4.1 Score=37.13 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=42.6
Q ss_pred EEEccCCCEEEEecCCCCCceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEe
Q 020021 82 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV 161 (332)
Q Consensus 82 ~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~ 161 (332)
=||.++|+.++.++...-..++.+.|+++++..+.-.+-.....+..++++.+.++-......++--|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 47888998887766433345677778988876554443222233456678888877776667788888888765544444
Q ss_pred c
Q 020021 162 Q 162 (332)
Q Consensus 162 ~ 162 (332)
+
T Consensus 121 p 121 (386)
T PF14583_consen 121 P 121 (386)
T ss_dssp -
T ss_pred C
Confidence 3
No 386
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.23 E-value=0.17 Score=30.26 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=25.4
Q ss_pred CceeEEEcCCC---CEEEEEcCCCeEEEEEccC
Q 020021 208 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFR 237 (332)
Q Consensus 208 ~v~~v~~s~dg---~~l~~~~~dg~i~i~d~~~ 237 (332)
.++++.|||+. .+++.+-..|.|+++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36789999855 4899999999999999985
No 387
>PHA02713 hypothetical protein; Provisional
Probab=93.80 E-value=3.7 Score=39.94 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=16.7
Q ss_pred CCCEEEEEcCCC--eEEEEEccCCe
Q 020021 217 DGRLMLLTTMEG--HIHVLDSFRGT 239 (332)
Q Consensus 217 dg~~l~~~~~dg--~i~i~d~~~~~ 239 (332)
+|+++++|+.++ .+-.||..+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 789999998887 56666665543
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=1.8 Score=37.61 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=80.2
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 203 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 203 ~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
.|....+++++|+|+.+.+.+-.+...-.++=...|.++.++.....+.. -.+.+.-+|+|+++=-.++.++++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~Dp--E~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDP--ETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCCh--hHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455689999999999988888887766665567898887765443322 2478888999999888899999998876
Q ss_pred CceEEEe---------cCC-CCCCceEEeCCCeeEEEeccc-e-EEEeccc
Q 020021 283 GKEVASW---------MSF-DTEPPVIKWTPGSLMFVTGSS-E-LSFWIPD 321 (332)
Q Consensus 283 ~~~~~~~---------~~~-~~~v~~l~~sp~~~~l~t~~~-d-~~~w~~~ 321 (332)
...+..+ ..+ +...-.++|.|....|..+-+ + +.++.+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 5332211 112 455667999997765554433 3 5555443
No 389
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.66 E-value=4.6 Score=35.48 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECC------CCCEEEEEcCCCcEEEEECCCCceEEEe
Q 020021 216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP------EGMFVISGSGDGSVYAWSVRSGKEVASW 289 (332)
Q Consensus 216 ~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~sp------dg~~l~sgs~Dg~i~vWd~~~~~~~~~~ 289 (332)
++++.=+.+..-|.|-+||.. |++++++... ..-+..+.++..| .|..|+--=-||+|..+|..+++.+..+
T Consensus 210 ~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 210 ADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 333333445556789999964 7888777432 2335556676654 5677766556999999999999988777
Q ss_pred cCCCC------CCceEEeCC
Q 020021 290 MSFDT------EPPVIKWTP 303 (332)
Q Consensus 290 ~~~~~------~v~~l~~sp 303 (332)
..-.+ ..+.|+|..
T Consensus 288 ~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 288 LDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred cCCCCCeEEecCeEEeeeCC
Confidence 54332 246788865
No 390
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.63 E-value=5.6 Score=36.36 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=54.4
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEE-EccC-------CeEeE-EeeecCC-CCCcceEEEECCCCCEEEEEcCC------
Q 020021 209 ANVVKFSNDGRLMLLTTMEGHIHVL-DSFR-------GTLLS-TYNVKPV-SRNSTLEASFSPEGMFVISGSGD------ 272 (332)
Q Consensus 209 v~~v~~s~dg~~l~~~~~dg~i~i~-d~~~-------~~~~~-~~~~~~~-~~~~~~~v~~spdg~~l~sgs~D------ 272 (332)
...+++.++| ++++ ... .|..+ |... .+.+. .+..... +......++|.|||.+.++-+..
T Consensus 74 p~Gi~~~~~G-lyV~-~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 74 VTGLAVAVGG-VYVA-TPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred ccceeEecCC-EEEe-CCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 4678888888 5554 333 45444 4321 11111 1211100 12234568999999987766621
Q ss_pred -------------CcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 273 -------------GSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 273 -------------g~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
|.|.-++...++ +..+..--.....++|+|+|.++++-..
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccC
Confidence 345555554433 2322222234578999999998887543
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.60 E-value=3.5 Score=34.77 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=39.6
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC
Q 020021 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE 262 (332)
Q Consensus 212 v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd 262 (332)
+++..+|.+.++.-..++|..+|..+|+.+.++.. +...+++++|--.
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEecCC
Confidence 45567899999999999999999999999999885 3567778888543
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.60 E-value=7.3 Score=37.58 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=47.0
Q ss_pred CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCc--eEEeCCCe
Q 020021 228 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPP--VIKWTPGS 305 (332)
Q Consensus 228 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~--~l~~sp~~ 305 (332)
|.+.-+|+.+|+..=...... ..... ...-.+..++.++.||.++++|..+|+.+....... .+. =+.|.-+|
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~---p~~~~-~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~-~~~a~P~ty~~~G 515 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDF---PLWGG-VLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS-GIVGPPVTYEQDG 515 (527)
T ss_pred eeEEEEeCCCCceeeEecCCC---CCCCc-ceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC-CceecCEEEEeCC
Confidence 468888888887654332110 00111 112255677788889999999999999987764322 221 14455577
Q ss_pred eEEEe
Q 020021 306 LMFVT 310 (332)
Q Consensus 306 ~~l~t 310 (332)
++.+.
T Consensus 516 ~qYv~ 520 (527)
T TIGR03075 516 KQYVA 520 (527)
T ss_pred EEEEE
Confidence 65443
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.53 E-value=7.9 Score=37.75 Aligned_cols=227 Identities=12% Similarity=0.133 Sum_probs=108.1
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCeeeEE--eeecccceeEEEEccCCCEEEEecCCCCC------ceeEEEEccC
Q 020021 45 SSSYLVTASDD------ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWD------ESLRLLSLHD 110 (332)
Q Consensus 45 dg~~l~tgs~D------~tv~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~s~~g~d------~~v~v~d~~~ 110 (332)
.+.+++.||.+ .++..||..+++-... +..... ...++...+ .+++. +|.| .++..||...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~--~lYv~--GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNG--KLYVV--GGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECC--EEEEE--ccccCCCcccceEEEecCCC
Confidence 35677778887 4788888877633222 221111 122333322 33322 2444 4566777766
Q ss_pred CceEEE--eecccccEEEEEecCCCCeEEEeeCCC-----cEEEEeCCCceEEEEEEecC-c-eeEEEcCCCe-EEEEEe
Q 020021 111 NKYLRY--FKGHHDRVVSLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQG-R-PAAAYDDQGL-VFAVAF 180 (332)
Q Consensus 111 ~~~~~~--~~~h~~~V~~v~~~~~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~~~-~-~~~~~~~~~~-~~~~~~ 180 (332)
++-... +....... +++. -+|...|.||.|| ++-.||..+++....-.+.. . ...+..-++. ++.+|.
T Consensus 359 ~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence 552211 11111111 1111 2577888999986 47788887776543322211 1 1122223444 444443
Q ss_pred C------CEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCe-----EEEEEccCCeEeEEeeecCC
Q 020021 181 G------GYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-----IHVLDSFRGTLLSTYNVKPV 249 (332)
Q Consensus 181 ~------~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~ 249 (332)
+ ..+..||..+..=. ..-... ......-.-.-++.+++.|+.++. |..+|..+.+-...-... .
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~--~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~ 511 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWT--LIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-S 511 (571)
T ss_pred CCCccccceEEEEcCCCCcee--ecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-c
Confidence 3 34666765432100 000000 000011123346788888887763 667887765543221110 1
Q ss_pred CCCcceEEEECCCCCEEEEEcCCC-----cEEEEECCCCce
Q 020021 250 SRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGKE 285 (332)
Q Consensus 250 ~~~~~~~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~~ 285 (332)
....+..++ -+++..+.|+.|| +|..||..+.+.
T Consensus 512 ~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 512 PRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 111111122 3778888888887 666777665543
No 394
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=3.8 Score=33.95 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=83.9
Q ss_pred CceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEee-CCCcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEE
Q 020021 100 DESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAV 178 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s-~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (332)
...|++||+.+++.+..-.-....+.+=-...-++.+.--. .||....+|.++-++...+..++.-=....++..++.+
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~Lims 146 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIMS 146 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeecCCcceEee
Confidence 45799999999887654322112222111111223332222 36667777777766666655444311111222233333
Q ss_pred EeCCEEEEEECccCCCCCeeEEEecCC-CCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCC--------
Q 020021 179 AFGGYIRMFDARKYEKGPFDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-------- 249 (332)
Q Consensus 179 ~~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------- 249 (332)
....+++.=|-..+...........+. ....+.+.+= ||.+++---.+..|...|..+|++...+...+.
T Consensus 147 dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~ 225 (262)
T COG3823 147 DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDK 225 (262)
T ss_pred CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccc
Confidence 333455554443332111111111111 1223333332 677777666777788888888888776654321
Q ss_pred -CCCcceEEEECCCC-CEEEEE
Q 020021 250 -SRNSTLEASFSPEG-MFVISG 269 (332)
Q Consensus 250 -~~~~~~~v~~spdg-~~l~sg 269 (332)
+.+....+|+.|++ ++++||
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 12244568888876 666666
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.49 E-value=5.2 Score=39.02 Aligned_cols=213 Identities=14% Similarity=0.207 Sum_probs=103.0
Q ss_pred ceeEEEEccCCceEEEee-cccccEEEEEecCCCCeEEEeeCC------CcEEEEeCCCceEEEEEEecCc--eeEEEcC
Q 020021 101 ESLRLLSLHDNKYLRYFK-GHHDRVVSLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQGR--PAAAYDD 171 (332)
Q Consensus 101 ~~v~v~d~~~~~~~~~~~-~h~~~V~~v~~~~~~~~l~s~s~D------g~i~iWd~~~~~~~~~~~~~~~--~~~~~~~ 171 (332)
..+..+|..++....... .+...-.++++. .+...+.||.| .++-.+|.+.++....-.+... ......-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 467788887764332211 111122233333 45788899999 3567788877764432222211 1112222
Q ss_pred CCeEEE-EEeCC-----EEEEEECccCCCCCeeEEEecCCCC-CceeEEEcCCCCEEEEEcCCC------eEEEEEccCC
Q 020021 172 QGLVFA-VAFGG-----YIRMFDARKYEKGPFDIFSVGGDIS-DANVVKFSNDGRLMLLTTMEG------HIHVLDSFRG 238 (332)
Q Consensus 172 ~~~~~~-~~~~~-----~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~v~~s~dg~~l~~~~~dg------~i~i~d~~~~ 238 (332)
.+.+++ +|.+| .+-.||.+..+ ... ++.... .-..-...-+|+++++|+.++ .+..||..++
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNK---WTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCc---ccc--cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 444444 44554 46666654321 000 000000 111122345788889988554 4677887765
Q ss_pred eEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-----cEEEEECCCCceEEE-ecCCCCCCceEEeCCCeeEEEecc
Q 020021 239 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----SVYAWSVRSGKEVAS-WMSFDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-----~i~vWd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~t~~ 312 (332)
+-...-... ..+.. ..++ .-++..++.||.|+ +|..+|..+.+.... .+........++ .-+++..+.|+
T Consensus 455 ~W~~~~~M~-~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG 530 (571)
T KOG4441|consen 455 TWTLIAPMN-TRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGG 530 (571)
T ss_pred ceeecCCcc-ccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEec
Confidence 432211100 01111 1122 24788888888877 377788877654322 122222111222 23456666666
Q ss_pred ce-------EEEeccccc
Q 020021 313 SE-------LSFWIPDLS 323 (332)
Q Consensus 313 ~d-------~~~w~~~~~ 323 (332)
.| +..|+|...
T Consensus 531 ~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 531 FDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccCccccceeEEcCCCCC
Confidence 54 555665543
No 396
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=2.2 Score=39.36 Aligned_cols=99 Identities=10% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecC-CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCC-c
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSG-K 284 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~-~ 284 (332)
+++.++.||+|.+.+++--.+..|..++..-.+....+...+ .....+....|+.. +.+|-.+..| +-++.+... +
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh
Confidence 478999999999999999999999999863322222221111 11223455667554 6777776555 667766443 3
Q ss_pred eEEEecCCCCCCceEEeCCCeeE
Q 020021 285 EVASWMSFDTEPPVIKWTPGSLM 307 (332)
Q Consensus 285 ~~~~~~~~~~~v~~l~~sp~~~~ 307 (332)
.+.....|+..|+.-.|.|+.+.
T Consensus 145 slRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 145 SLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hhhhhhhcccCccEEEEccccce
Confidence 35555678888999999998753
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.27 E-value=10 Score=38.29 Aligned_cols=229 Identities=11% Similarity=0.119 Sum_probs=113.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecccc--------eeEEEEcc----------------CCCEEEEecCCCCCc
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCFTS----------------HPTTVIYSSKNGWDE 101 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~~~~~s~~g~d~ 101 (332)
+..|..++.++.|.-.|..+|+.+-.+...... ...+++.. .+..++.++. |+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence 567777888899999999999988666432210 11122221 2235555543 77
Q ss_pred eeEEEEccCCceEEEeecccccEE-------------EEEecC--CCCeEEEeeC----------CCcEEEEeCCCceEE
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVV-------------SLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ 156 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~-------------~v~~~~--~~~~l~s~s~----------Dg~i~iWd~~~~~~~ 156 (332)
.+.-.|.++|+.+..+.. .+.|. ...-.| .+..++.|+. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 888889999988766532 22110 011111 1345666643 688999999999877
Q ss_pred EEEEecCceeEEEcCCCeEEEEEeCC--EEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEE
Q 020021 157 GLLRVQGRPAAAYDDQGLVFAVAFGG--YIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD 234 (332)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d 234 (332)
-.+.............+.....+..+ ..-.+|.+.. +..+.. +.... .+-...+........+.|...|
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g----lvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG----LVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC----eEEEeC-CCccc----cccCCccccCcccccceEEEEe
Confidence 65543110000000112222211111 1111221110 011111 11000 0000001001112245677778
Q ss_pred ccCCeEeEEeeecCC-------CCCcceEEEECC-CCC---EEEEEcCCCcEEEEECCCCceEEE
Q 020021 235 SFRGTLLSTYNVKPV-------SRNSTLEASFSP-EGM---FVISGSGDGSVYAWSVRSGKEVAS 288 (332)
Q Consensus 235 ~~~~~~~~~~~~~~~-------~~~~~~~v~~sp-dg~---~l~sgs~Dg~i~vWd~~~~~~~~~ 288 (332)
..+|+..=.+...++ ...+ .-+.+.. +|+ .++.++.+|.+++.|-.+|+.+..
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p-~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQP-SLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCCCceEEEecccCCccccccccCCc-eEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 888876533321110 0111 1123333 664 899999999999999999998754
No 398
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.20 E-value=2.2 Score=37.85 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=57.5
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceE
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEV 286 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~ 286 (332)
..+..+..++||++++++..-.-..-||.-... -..+.. .....+-.+.|+||+...+.+ ..|.|+.=+... ..
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~ 218 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DG 218 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCC--Cc
Confidence 456777889999988888666566677753211 112221 134667789999999887766 788888887222 12
Q ss_pred EEecC-------CCCCCceEEeCCCeeEEEeccceEEE
Q 020021 287 ASWMS-------FDTEPPVIKWTPGSLMFVTGSSELSF 317 (332)
Q Consensus 287 ~~~~~-------~~~~v~~l~~sp~~~~l~t~~~d~~~ 317 (332)
.++.. -.-.+..++|.+++...+.|++...+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 22211 11125778999998888887765333
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.09 E-value=11 Score=38.25 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=56.4
Q ss_pred CceeEEEcCC-CCEEEEEcC----------CCeEEEEEccCCeEeEEeeecCCCCCcceEE-EECCCCCEEEEEcCCCcE
Q 020021 208 DANVVKFSND-GRLMLLTTM----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVISGSGDGSV 275 (332)
Q Consensus 208 ~v~~v~~s~d-g~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v-~~spdg~~l~sgs~Dg~i 275 (332)
.+.++.|..| ++++++|+. .|+|.+|....+..+....-. .-.+.+.++ .| +|++||+-+ -.|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f--ngkllA~In--~~v 850 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF--NGKLLAGIN--QSV 850 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh--CCeEEEecC--cEE
Confidence 3455668777 788888863 478888887663332221111 111223222 33 788887664 569
Q ss_pred EEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021 276 YAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 276 ~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~ 311 (332)
+++++.+++.+..--.+..++..+...-.+..++.|
T Consensus 851 rLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg 886 (1096)
T KOG1897|consen 851 RLYEWTTERELRIECNISNPIIALDLQVKGDEIAVG 886 (1096)
T ss_pred EEEEccccceehhhhcccCCeEEEEEEecCcEEEEe
Confidence 999998886655443444445555444444444444
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.95 E-value=9.3 Score=36.90 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeecc-cceeE-EEE-------ccCCCEEEEecCCCCCceeEEEEccCCceEEE
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDL-VCF-------TSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY 116 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~-~~v~~-~~~-------~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~ 116 (332)
+..|..++.++.|.-.|..+|+.+-.+.... ..+.. .+. .-.+..++.+. .|+.+...|.++|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t---~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT---LDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc---CCCEEEEEECCCCCEEee
Confidence 4577778888899999999999886654321 11110 000 11223455554 367888999999998765
Q ss_pred eec--ccc--cEEEEEecCCCCeEEEee------CCCcEEEEeCCCceEEEEE
Q 020021 117 FKG--HHD--RVVSLSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGLL 159 (332)
Q Consensus 117 ~~~--h~~--~V~~v~~~~~~~~l~s~s------~Dg~i~iWd~~~~~~~~~~ 159 (332)
... +.. .+++--.-.++ .++.++ .+|.|...|.++++.+-.+
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 542 111 12221111134 444433 3688999999888765443
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.82 E-value=1.5 Score=39.52 Aligned_cols=103 Identities=19% Similarity=0.350 Sum_probs=55.3
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeE---Ee-eecCCCCCcceEEEECCC----CCEEEEEcCC--------
Q 020021 209 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS---TY-NVKPVSRNSTLEASFSPE----GMFVISGSGD-------- 272 (332)
Q Consensus 209 v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~---~~-~~~~~~~~~~~~v~~spd----g~~l~sgs~D-------- 272 (332)
...++|.|||+++++- ..|.|++++ ..+.... .. ........-...++|+|+ +...++.+..
T Consensus 4 P~~~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999987764 599999999 4455412 22 111222334567899994 4444444422
Q ss_pred CcEEEEECCCC-------ceE-EEecC---CCCCCceEEeCCCeeEEEeccc
Q 020021 273 GSVYAWSVRSG-------KEV-ASWMS---FDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 273 g~i~vWd~~~~-------~~~-~~~~~---~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
..|.-|.+..+ +.+ ..+.. ....-..|.|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 24555555433 111 11222 1122356999999988777553
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.81 E-value=5.8 Score=39.67 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=50.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEEccC----------CeE---eEEeee-----cCCCCCcceEEEECCC---CCE
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFR----------GTL---LSTYNV-----KPVSRNSTLEASFSPE---GMF 265 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~----------~~~---~~~~~~-----~~~~~~~~~~v~~spd---g~~ 265 (332)
..|..+.+||+|++++..+..|-..+ .+.. |.. -+++.. .......+..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36788999999999999888765433 3211 111 011111 1122345667899986 588
Q ss_pred EEEEcCCCcEEEEECCCCc
Q 020021 266 VISGSGDGSVYAWSVRSGK 284 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~~~ 284 (332)
|+.=..|+++|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9888999999999997644
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.79 E-value=0.46 Score=40.02 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=46.0
Q ss_pred EECCCCCEEEEEcCCCcEEEEECCCCceEEEe------c--------CCCCCCceEEeCCCeeEEEeccc-eEEEecccc
Q 020021 258 SFSPEGMFVISGSGDGSVYAWSVRSGKEVASW------M--------SFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDL 322 (332)
Q Consensus 258 ~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~------~--------~~~~~v~~l~~sp~~~~l~t~~~-d~~~w~~~~ 322 (332)
.+..++.+|++-+.+|.+++||+.+++.+... . .....|..+..+.+|.-+++-+. +...|+.++
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 35568899999999999999999998765432 1 23345677778888887776543 455565544
No 404
>PHA03098 kelch-like protein; Provisional
Probab=92.60 E-value=8.2 Score=37.25 Aligned_cols=53 Identities=4% Similarity=0.034 Sum_probs=27.4
Q ss_pred EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCce
Q 020021 230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGKE 285 (332)
Q Consensus 230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~~ 285 (332)
+.+||..+++-...-. .+........+. .+++.++.|+.+ ..+.++|..+.+.
T Consensus 458 v~~yd~~~~~W~~~~~-~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 458 VESYNPVTNKWTELSS-LNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEecCCCCceeeCCC-CCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 7788877654322111 011111111222 377777777764 4678888776543
No 405
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.52 E-value=0.81 Score=26.80 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCCCEEEEEc-CCCcEEEEECCCCceEEEecCCCCCCceEEeC
Q 020021 261 PEGMFVISGS-GDGSVYAWSVRSGKEVASWMSFDTEPPVIKWT 302 (332)
Q Consensus 261 pdg~~l~sgs-~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~s 302 (332)
||+++|+.+. .+++|.++|..+++.+..+.. ......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 5777666654 578999999998888777654 3445555553
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.47 E-value=1.9 Score=39.94 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=45.0
Q ss_pred cccceeEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeeeccc
Q 020021 23 SMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINSKKY 77 (332)
Q Consensus 23 ~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~ 77 (332)
.+...-.|......+.+|..+|.+++.|....=|.|.++|+.++..++.+++..+
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 3455556788888899999999998888877779999999999988887776544
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.10 E-value=0.84 Score=27.31 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=26.1
Q ss_pred CcEEEEEECCCC---CEEEEEeCCCcEEEEEcCC
Q 020021 35 GRISSMDFHKSS---SYLVTASDDESIRLYDVTA 65 (332)
Q Consensus 35 ~~I~~i~~s~dg---~~l~tgs~D~tv~iwd~~~ 65 (332)
|+|.++.|||++ .+|+-+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999865 4888888889999999974
No 408
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.03 E-value=7.5 Score=33.66 Aligned_cols=224 Identities=12% Similarity=0.174 Sum_probs=115.3
Q ss_pred ccCCCEEEEecCCCCCceeEEEEcc-CCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEE----
Q 020021 85 TSHPTTVIYSSKNGWDESLRLLSLH-DNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL---- 159 (332)
Q Consensus 85 ~~~~~~~~~~s~~g~d~~v~v~d~~-~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~---- 159 (332)
...++.++.|.. ++ +.++++. .....+.. +...|..+...++-+.|+.-+ |+.+.++++..-......
T Consensus 4 ~~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 4 DSWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred ccCCCEEEEEEC---CC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 345667777764 33 7888883 33333322 333499999988777666554 499999997543322200
Q ss_pred ---------Eec-CceeEEE-----cCCCeEEEEEeCCEEEEEECccCCCC---CeeEEEecCCCCCceeEEEcCCCCEE
Q 020021 160 ---------RVQ-GRPAAAY-----DDQGLVFAVAFGGYIRMFDARKYEKG---PFDIFSVGGDISDANVVKFSNDGRLM 221 (332)
Q Consensus 160 ---------~~~-~~~~~~~-----~~~~~~~~~~~~~~i~vwd~~~~~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l 221 (332)
..+ .+.+..+ ......+.++....|.+|........ .+.-+.+ +..+..++|. +..+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL--GNKI 151 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe--CCEE
Confidence 111 1111112 23446677777889999887653211 1122222 2456778887 5566
Q ss_pred EEEcCCCeEEEEEccCCeEeEEeeecCC---------CCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEE-EecC
Q 020021 222 LLTTMEGHIHVLDSFRGTLLSTYNVKPV---------SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVA-SWMS 291 (332)
Q Consensus 222 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~ 291 (332)
+.+..+ ...+.|+.++.....+..... ...+. .+---+++.+|++.. . +-++=-..|+... ....
T Consensus 152 ~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Ll~~~--~-~g~fv~~~G~~~r~~~i~ 226 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL-GIFQLSDNEFLLCYD--N-IGVFVNKNGEPSRKSTIQ 226 (275)
T ss_pred EEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCce-EEEEeCCceEEEEec--c-eEEEEcCCCCcCcccEEE
Confidence 666544 467788887665443321110 01122 222224567777542 2 3333223454433 1111
Q ss_pred CCCCCceEEeCCCeeEEEeccceEEEecccccccc
Q 020021 292 FDTEPPVIKWTPGSLMFVTGSSELSFWIPDLSKLG 326 (332)
Q Consensus 292 ~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~~~~ 326 (332)
-+..+..+++... -.++....-+.+|+...++|-
T Consensus 227 W~~~p~~~~~~~p-yli~~~~~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 227 WSSAPQSVAYSSP-YLIAFSSNSIEVRSLETGELV 260 (275)
T ss_pred cCCchhEEEEECC-EEEEECCCEEEEEECcCCcEE
Confidence 2334455665333 233333444888887655543
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.99 E-value=5.2 Score=36.59 Aligned_cols=100 Identities=12% Similarity=0.239 Sum_probs=55.6
Q ss_pred CCceeEEEcCCCCEEEEEc-----------CCC-eEEEEEccC--CeEe--EEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021 207 SDANVVKFSNDGRLMLLTT-----------MEG-HIHVLDSFR--GTLL--STYNVKPVSRNSTLEASFSPEGMFVISGS 270 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~-----------~dg-~i~i~d~~~--~~~~--~~~~~~~~~~~~~~~v~~spdg~~l~sgs 270 (332)
.....+++.++|+++++-. ..+ .|.+++-.. |+.. ..+. ........+++.++| .++ ++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---~~l~~p~Gi~~~~~G-lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---EELSMVTGLAVAVGG-VYV-AT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---cCCCCccceeEecCC-EEE-eC
Confidence 3456789999999888753 223 788887543 3322 1221 112234568888999 444 34
Q ss_pred CCCcEEEE-ECCCC-----c--eE-EEecC----CCCCCceEEeCCCeeEEEecc
Q 020021 271 GDGSVYAW-SVRSG-----K--EV-ASWMS----FDTEPPVIKWTPGSLMFVTGS 312 (332)
Q Consensus 271 ~Dg~i~vW-d~~~~-----~--~~-~~~~~----~~~~v~~l~~sp~~~~l~t~~ 312 (332)
... |..+ |.... + .+ ..+.. +......++|.|||.+.++.+
T Consensus 89 ~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 89 PPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 443 4433 44210 1 12 12222 123367899999998777644
No 410
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.89 E-value=4.4 Score=38.11 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEeccc-eEEEeccccccccccccc
Q 020021 261 PEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS-ELSFWIPDLSKLGAYVGR 331 (332)
Q Consensus 261 pdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~-d~~~w~~~~~~~~~~~~~ 331 (332)
....|+|.||.-|-|+++|--..+.-..+.+...+|..+.-+.+|.++.+.+. .+.+-+... +-|++.||
T Consensus 571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i-k~g~~aGr 641 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI-KYGQPAGR 641 (776)
T ss_pred ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc-ccCCcccc
Confidence 35679999999999999997543333446677788999999999987655554 466666555 55666665
No 411
>PRK10115 protease 2; Provisional
Probab=91.73 E-value=16 Score=36.67 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=68.9
Q ss_pred CcEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeeeEE-eeecccceeEEEEccCCCEEEEecCC---CCCceeEE
Q 020021 35 GRISSMDFHKSSSYLVTASDD-----ESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRL 105 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D-----~tv~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~---g~d~~v~v 105 (332)
-.+..+.+||||++|+-+-+. .+|++-|+.+++.+.. +..-. ..++|.++++.++++... .....+..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 447788899999987654322 3688889988764322 22211 348999999888877542 12356778
Q ss_pred EEccCC--ceEEEeecccccEE-EEEecCCCCeEEEee---CCCcEEEEeC
Q 020021 106 LSLHDN--KYLRYFKGHHDRVV-SLSLCSSKDCFISGS---LDRTVLLWDQ 150 (332)
Q Consensus 106 ~d~~~~--~~~~~~~~h~~~V~-~v~~~~~~~~l~s~s---~Dg~i~iWd~ 150 (332)
+++.++ +-...+.+...... .+..+.++++++..+ .++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 888887 33444554333333 333444777554333 3457888884
No 412
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.25 E-value=1.2 Score=37.43 Aligned_cols=71 Identities=21% Similarity=0.351 Sum_probs=51.3
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe-eecC----------CCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKP----------VSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 212 v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~----------~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
+.+...+.++++-+.+|.+++||+.+++.+... ...+ .....+..+.++.+|.-+++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 446678899999999999999999988765432 1111 2334566778888888888775 578899987
Q ss_pred CCC
Q 020021 281 RSG 283 (332)
Q Consensus 281 ~~~ 283 (332)
.=+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 543
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.10 E-value=2.5 Score=39.17 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=54.2
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCC----------------CCE-EEEEc
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE----------------GMF-VISGS 270 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spd----------------g~~-l~sgs 270 (332)
.+..++.+|++++.++...-|+|.++|+.++..++-++...-. .+-+--...+. ..+ ++-+-
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 4677899999999999888899999999988777655421100 00000001111 112 33345
Q ss_pred CCCcEEEEECCCCceEEEecC
Q 020021 271 GDGSVYAWSVRSGKEVASWMS 291 (332)
Q Consensus 271 ~Dg~i~vWd~~~~~~~~~~~~ 291 (332)
.-|.|.||.+.+|..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 578999999999998877643
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.36 E-value=1 Score=38.99 Aligned_cols=59 Identities=19% Similarity=0.425 Sum_probs=46.2
Q ss_pred EECCCCCEEEEEcCC-----CcEEEEECCCC-ceEEEecCCCCCCceEEeCCCeeEEEeccceEE
Q 020021 258 SFSPEGMFVISGSGD-----GSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVTGSSELS 316 (332)
Q Consensus 258 ~~spdg~~l~sgs~D-----g~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~~ 316 (332)
.|||||++|+..-.| |.|-|||...+ ..+..+..|.=....+.|.+||+.++.+...+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIe 184 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIE 184 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCcee
Confidence 699999999876433 58999999753 346778888877888999999999888765433
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=2.2 Score=39.41 Aligned_cols=99 Identities=18% Similarity=0.327 Sum_probs=67.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE----EeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK----TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
..|+|.+|.||+|.+.||.--.|++|-+.+....+... +-+.....+...+|+.+ ..++..+..| +.+|-+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G----~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG----IEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC----eEEEEE
Confidence 45799999999999999999999999999884333221 11223334677788766 4555554334 455554
Q ss_pred cCCc-eEEEeecccccEEEEEecCCCCeE
Q 020021 109 HDNK-YLRYFKGHHDRVVSLSLCSSKDCF 136 (332)
Q Consensus 109 ~~~~-~~~~~~~h~~~V~~v~~~~~~~~l 136 (332)
...+ .++..+.|...|+.-.|+++.+.+
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceE
Confidence 3322 345567788899999999987743
No 416
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.46 E-value=1.9 Score=41.81 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=42.8
Q ss_pred CCCCEEEEEcCCCeEEEEEccC----CeEeEEeeec-------------------CCCCCcceEEEECC----CCCEEEE
Q 020021 216 NDGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVK-------------------PVSRNSTLEASFSP----EGMFVIS 268 (332)
Q Consensus 216 ~dg~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~-------------------~~~~~~~~~v~~sp----dg~~l~s 268 (332)
++...++.+..||.+..++... +......... .........++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3556677777788777776553 2111111100 00112334566666 7889999
Q ss_pred EcCCCcEEEEECCCCceEEEe
Q 020021 269 GSGDGSVYAWSVRSGKEVASW 289 (332)
Q Consensus 269 gs~Dg~i~vWd~~~~~~~~~~ 289 (332)
.+.|+.+|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=89.31 E-value=20 Score=34.09 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCC-----CcEEEEECCCCc
Q 020021 216 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVYAWSVRSGK 284 (332)
Q Consensus 216 ~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~D-----g~i~vWd~~~~~ 284 (332)
-+|++++.|+ .+.+||..+++-...-.. +........+. .+|+..+.||.+ .++.++|..+.+
T Consensus 406 ~~~~IYv~GG---~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 406 FGRRLFLVGR---NAEFYCESSNTWTLIDDP-IYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ECCEEEEECC---ceEEecCCCCcEeEcCCC-CCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4566666663 456677665433211111 11111111222 377777888754 246666665543
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.15 E-value=0.12 Score=51.14 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=66.3
Q ss_pred eccCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEEcC--CCeeeEEeeec-----ccceeEEEEccCCCEEEEecCCCCCc
Q 020021 30 FRDYNGRISSMDFH-KSSSYLVTASDDESIRLYDVT--AATCLKTINSK-----KYGVDLVCFTSHPTTVIYSSKNGWDE 101 (332)
Q Consensus 30 l~~h~~~I~~i~~s-~dg~~l~tgs~D~tv~iwd~~--~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~s~~g~d~ 101 (332)
++|..|.|-.|.|- -+-..++ -.=|.+.+||++ .|+....+.-+ ...+..+.|.|.-..-++.+-+--++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 57788888888884 2222222 233788999986 45443333211 12233444443222111111112256
Q ss_pred eeEEEEccCCceEEEeecccccEEEEE-----------ecCCCCeEEEeeCCCcEEEEeC
Q 020021 102 SLRLLSLHDNKYLRYFKGHHDRVVSLS-----------LCSSKDCFISGSLDRTVLLWDQ 150 (332)
Q Consensus 102 ~v~v~d~~~~~~~~~~~~h~~~V~~v~-----------~~~~~~~l~s~s~Dg~i~iWd~ 150 (332)
++++..+.+... ..+++|...++.++ .+|||+.|++++.||.+++|-+
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 677766654332 44556666554433 5789999999999999999964
No 419
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.72 E-value=16 Score=32.04 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=35.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEeee
Q 020021 32 DYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTINS 74 (332)
Q Consensus 32 ~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~ 74 (332)
|-...|+++.|+|+.+.|++...-..-.+|=...|+.+.++.-
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL 125 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL 125 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc
Confidence 4445599999999999999999888888887778998887753
No 420
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.63 E-value=22 Score=33.55 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=35.3
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec---C-CCCCcceEEEECCCC
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---P-VSRNSTLEASFSPEG 263 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~-~~~~~~~~v~~spdg 263 (332)
....++|.|||+++++--..|+|++++...+......... . ....-...++|+|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4567899999998777665799999986554321111110 0 113445679999874
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.55 E-value=1.1 Score=43.38 Aligned_cols=38 Identities=26% Similarity=0.564 Sum_probs=29.2
Q ss_pred CcEEEEEECC----CCCEEEEEeCCCcEEEEEcCCCeeeEEe
Q 020021 35 GRISSMDFHK----SSSYLVTASDDESIRLYDVTAATCLKTI 72 (332)
Q Consensus 35 ~~I~~i~~s~----dg~~l~tgs~D~tv~iwd~~~~~~~~~~ 72 (332)
+.+.++.+++ +..+|++.+.|+++|+||+.++.++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455666666 6789999999999999999999997665
No 422
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.25 E-value=22 Score=35.59 Aligned_cols=197 Identities=14% Similarity=0.219 Sum_probs=95.0
Q ss_pred cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc----e---------EEEEE-----------EecCceeEEEc----
Q 020021 119 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE----K---------CQGLL-----------RVQGRPAAAYD---- 170 (332)
Q Consensus 119 ~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~----~---------~~~~~-----------~~~~~~~~~~~---- 170 (332)
.-.+.|...+|+.|.+.+.-...+.+|.+.+-.-. . ....+ +..+.-+..-+
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp 189 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMP 189 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCc
Confidence 34567888999999986666666778887763211 0 00000 00000000001
Q ss_pred ---CCCeEEEEEeCCEEEEE--ECccC--------CCCCeeEEEecCC--------CCCceeEEEcCCCCEEEEEcCCCe
Q 020021 171 ---DQGLVFAVAFGGYIRMF--DARKY--------EKGPFDIFSVGGD--------ISDANVVKFSNDGRLMLLTTMEGH 229 (332)
Q Consensus 171 ---~~~~~~~~~~~~~i~vw--d~~~~--------~~~~~~~~~~~~~--------~~~v~~v~~s~dg~~l~~~~~dg~ 229 (332)
+-|.++++.....+-.| |..-. .+..+..++-.|+ ...-..+.+-|.|+.+++-..||.
T Consensus 190 ~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~ 269 (1243)
T COG5290 190 YMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGC 269 (1243)
T ss_pred ccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCC
Confidence 22445555556677777 43211 1112333332222 122344788899999999876653
Q ss_pred -----EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCC
Q 020021 230 -----IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPG 304 (332)
Q Consensus 230 -----i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~ 304 (332)
|..+.. .|-.-..+...-........++|......+| .+....+.+|-..+-...-.....-..+.-++|+|.
T Consensus 270 ~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 270 STSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred CCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 444442 1211011110000111222345544444443 345678999976654332221112234667889995
Q ss_pred --eeEEEeccceEEE
Q 020021 305 --SLMFVTGSSELSF 317 (332)
Q Consensus 305 --~~~l~t~~~d~~~ 317 (332)
..++.+++.-+..
T Consensus 348 ~~nTl~f~d~~~I~~ 362 (1243)
T COG5290 348 EKNTLLFRDGERILR 362 (1243)
T ss_pred cCcEEEEecCCeEEE
Confidence 4566666654333
No 423
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.50 E-value=21 Score=32.05 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=63.9
Q ss_pred CceeEEEcCCCCEEEEEcCC------CeEEEEEccCCeEeEEeeecCC------------CCCcceEEEECCCCCEEEEE
Q 020021 208 DANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPV------------SRNSTLEASFSPEGMFVISG 269 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~------------~~~~~~~v~~spdg~~l~sg 269 (332)
+..++++.++|.++++.-.+ -.|+.+|.. |+.+..+..... .+...-.++++|||+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45567888899988888777 789999876 776655532211 12233368999999977766
Q ss_pred cC-----CC--c-------EEEEEC--CC-CceEEEe----cC-----CCCCCceEEeCCCeeEEEe
Q 020021 270 SG-----DG--S-------VYAWSV--RS-GKEVASW----MS-----FDTEPPVIKWTPGSLMFVT 310 (332)
Q Consensus 270 s~-----Dg--~-------i~vWd~--~~-~~~~~~~----~~-----~~~~v~~l~~sp~~~~l~t 310 (332)
.+ |+ . ++|+.. .+ ++....+ .. ....++.+.+-|++++|+-
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 44 22 1 555544 33 2222222 11 2346788889999887765
No 424
>PHA03098 kelch-like protein; Provisional
Probab=87.40 E-value=29 Score=33.50 Aligned_cols=175 Identities=8% Similarity=0.105 Sum_probs=79.1
Q ss_pred CCCCeEEEeeCCC------cEEEEeCCCceEEEEEEec---CceeEEEcCCCeEEEEEeC-----CEEEEEECccCCCCC
Q 020021 131 SSKDCFISGSLDR------TVLLWDQRAEKCQGLLRVQ---GRPAAAYDDQGLVFAVAFG-----GYIRMFDARKYEKGP 196 (332)
Q Consensus 131 ~~~~~l~s~s~Dg------~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~i~vwd~~~~~~~~ 196 (332)
.++..++.||.++ .+..+|..+++....-.++ .....+...+..++.+|.+ ..+..||.....
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--- 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK--- 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc---
Confidence 3456777777643 4667887776653322111 1112222233334444433 345667654321
Q ss_pred eeEEEecCCCCCceeEEEcCCCCEEEEEcCC------CeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc
Q 020021 197 FDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 270 (332)
Q Consensus 197 ~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs 270 (332)
...... .........+..-++++++.|+.+ ..+..||..+.+-...-. .+..... ..+...+++.++.||
T Consensus 370 W~~~~~-lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~--~~~~~~~~~iyv~GG 445 (534)
T PHA03098 370 WREEPP-LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYG--GCAIYHDGKIYVIGG 445 (534)
T ss_pred eeeCCC-cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccC--ceEEEECCEEEEECC
Confidence 100000 000111112233467888888732 357888887654321111 0111111 122334677777776
Q ss_pred CCC--------cEEEEECCCCceEEEe-cCCCCCCceEEeCCCeeEEEeccc
Q 020021 271 GDG--------SVYAWSVRSGKEVASW-MSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 271 ~Dg--------~i~vWd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.+. .+.++|..+.+..... ...+..-..++ ..++++++.|+.
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~ 496 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGD 496 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCC
Confidence 432 3888998876543221 11111111122 226677777753
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.07 E-value=15 Score=36.41 Aligned_cols=104 Identities=10% Similarity=0.116 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCeEEEEEccC-------C----eE------eEE-eeecCCCCCcceEEEEC--CCCCEEEEEcCCCcE
Q 020021 216 NDGRLMLLTTMEGHIHVLDSFR-------G----TL------LST-YNVKPVSRNSTLEASFS--PEGMFVISGSGDGSV 275 (332)
Q Consensus 216 ~dg~~l~~~~~dg~i~i~d~~~-------~----~~------~~~-~~~~~~~~~~~~~v~~s--pdg~~l~sgs~Dg~i 275 (332)
-+..+|+.+.+||.|.+|...+ . .. +.. +.. .....++.+++. ...++||.++.-..|
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceE
Confidence 3557889999999999996521 0 00 000 111 112466788888 788999988888889
Q ss_pred EEEECCC--CceEEE-ecCCCCCCceEEeCCCe------eEEEeccceEEEeccc
Q 020021 276 YAWSVRS--GKEVAS-WMSFDTEPPVIKWTPGS------LMFVTGSSELSFWIPD 321 (332)
Q Consensus 276 ~vWd~~~--~~~~~~-~~~~~~~v~~l~~sp~~------~~l~t~~~d~~~w~~~ 321 (332)
.||-... .+.... -..+...|++|+|-++. ..+++++-...+|.++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 9887654 222111 11355679999997653 2566555444444433
No 426
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.89 E-value=24 Score=36.86 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=26.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLYDVTA 65 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~ 65 (332)
.....++|+|...++|-+..++.+++|-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4566789999999999999999999997643
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=35 Score=33.86 Aligned_cols=93 Identities=20% Similarity=0.329 Sum_probs=54.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC-----
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR----- 281 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~----- 281 (332)
+.+.-+.+||.+++++.-+..|.|.+.+.+..+.+.+++... + .+ |+ .++=+|.|..+..|+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~-~~-------p~--qm~WcgndaVvl~~e~~l~lvg 285 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-H-DP-------PK--QMAWCGNDAVVLSWEVNLMLVG 285 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-C-Cc-------hH--hceeecCCceEEEEeeeEEEEc
Confidence 456778999999999999999999999887766665554221 1 11 22 22234455666666541
Q ss_pred -CCceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 282 -SGKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 282 -~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.|..+.-+..++. -+.-=+||-.+.|.++
T Consensus 286 p~gd~V~f~yd~t~---~l~~E~DGVRI~t~t~ 315 (829)
T KOG2280|consen 286 PPGDSVQFYYDETA---ILSAEVDGVRIITSTS 315 (829)
T ss_pred CCCCccccccCCCc---eeeeccCeeEEeccch
Confidence 2222332222322 2555567766666543
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=38 Score=33.66 Aligned_cols=51 Identities=20% Similarity=0.393 Sum_probs=36.1
Q ss_pred CcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEeCC
Q 020021 252 NSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTP 303 (332)
Q Consensus 252 ~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp 303 (332)
..+..+..||+.++||--..+|.|.+-++...+..-.+. .|. ....++|--
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcg 269 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCG 269 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeec
Confidence 456678999999999999999999999887666544432 332 233556543
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.55 E-value=23 Score=30.53 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=62.6
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEE-ccCCeEeE-EeeecCCCCCcceEEEECCCCCEEEEEc---CCCcEEEEECC---
Q 020021 210 NVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVYAWSVR--- 281 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~dg~i~i~d-~~~~~~~~-~~~~~~~~~~~~~~v~~spdg~~l~sgs---~Dg~i~vWd~~--- 281 (332)
..-.|+++|...+....+...+++. ...+.... ..... .....|.++.+||||..+|-.. .++.|+|=-+.
T Consensus 69 ~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 69 TRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred ccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 3447888988888777666666663 33333221 11111 1112788999999999888776 35677776553
Q ss_pred CC--ceE----EEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 282 SG--KEV----ASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 282 ~~--~~~----~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.+ ..+ .........+..++|.+++.+++.+..
T Consensus 148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 23 111 111233457889999999988877654
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.46 E-value=26 Score=31.13 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEE-ccCCeEeEEeeecC-CCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCc
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLD-SFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGK 284 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~-~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~ 284 (332)
..+..+.|+|++.+.+.+ ..|.|+.-| ...++.-..-.... .....+..++|.+++...|+|+. |++.+ ....|+
T Consensus 187 ~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGk 263 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGK 263 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTS
T ss_pred ceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCc
Confidence 357788999998877755 788888877 22222211111110 12223578899999888887764 55544 344444
Q ss_pred e-EEE--ecCCCCCCceEEeCCCeeEEEeccceE
Q 020021 285 E-VAS--WMSFDTEPPVIKWTPGSLMFVTGSSEL 315 (332)
Q Consensus 285 ~-~~~--~~~~~~~v~~l~~sp~~~~l~t~~~d~ 315 (332)
. .+. ....++....|.|.++.+-|+-|...+
T Consensus 264 tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 264 TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp S-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred cceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 3 222 123445678899977777787776553
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.91 E-value=33 Score=31.83 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEe--EEeeecCC--CCCcceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 207 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 207 ~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~--~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
..+..+.+.++|.+++++ ..|.+..-+ ..+..- .++..... ....+..+.|.+++..+++| ..|.+.... ..
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~ 356 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DG 356 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CC
Confidence 456788899999988766 555554332 333211 01211111 12346678898888777655 678777764 33
Q ss_pred Cce---EEEecCCCCCCceEEeCCCeeEEEeccceE
Q 020021 283 GKE---VASWMSFDTEPPVIKWTPGSLMFVTGSSEL 315 (332)
Q Consensus 283 ~~~---~~~~~~~~~~v~~l~~sp~~~~l~t~~~d~ 315 (332)
++. +............+.|.++++.+++|...+
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 433 111123345677899988888888886653
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.40 E-value=26 Score=30.19 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=77.7
Q ss_pred cEEEEEecCCCCeEEEee--CC-CcEEEEeCCCceEEEEEEecCceeEEEcCCCeEEEEEe-CCEEEEEE-CccCCCCCe
Q 020021 123 RVVSLSLCSSKDCFISGS--LD-RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF-GGYIRMFD-ARKYEKGPF 197 (332)
Q Consensus 123 ~V~~v~~~~~~~~l~s~s--~D-g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~vwd-~~~~~~~~~ 197 (332)
.+...+++++++.++... .+ ..+.++...... ...........-.+++.+.+.+... +...+++. .......+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 577889999999877666 33 344444432221 1111111222234455566666554 34445442 221111111
Q ss_pred eEEEecCCCCCceeEEEcCCCCEEEEEc---CCCeEEEEEcc---CC---eEeEEeeecCCCCCcceEEEECCCCCEEEE
Q 020021 198 DIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLLSTYNVKPVSRNSTLEASFSPEGMFVIS 268 (332)
Q Consensus 198 ~~~~~~~~~~~v~~v~~s~dg~~l~~~~---~dg~i~i~d~~---~~---~~~~~~~~~~~~~~~~~~v~~spdg~~l~s 268 (332)
.. ........|..+.+||||..++.-. .++.|.+--+. .+ .+.............+..++|.+++.+++.
T Consensus 104 ~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 104 EV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred Ee-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11 1111111688999999998776654 35677775432 22 111122222222356778999999998888
Q ss_pred EcCCC
Q 020021 269 GSGDG 273 (332)
Q Consensus 269 gs~Dg 273 (332)
+...+
T Consensus 183 ~~~~~ 187 (253)
T PF10647_consen 183 GRSAG 187 (253)
T ss_pred eCCCC
Confidence 85544
No 433
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.36 E-value=45 Score=32.96 Aligned_cols=157 Identities=12% Similarity=0.149 Sum_probs=85.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeE--Eeeec-ccceeEEEEcc------CCCEEEEecC-CCCCcee
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRLYDVTAATCLK--TINSK-KYGVDLVCFTS------HPTTVIYSSK-NGWDESL 103 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~--~~~~~-~~~v~~~~~~~------~~~~~~~~s~-~g~d~~v 103 (332)
.+.|-+|.|.++++.++..-..|.|.+||...+..-. .+... ...+.--+|.+ ....++..+. .+..-..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 4567799999999999999999999999993222111 11111 11010001211 1223333332 2333567
Q ss_pred EEEEcc-CCceEEEee---cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC-c------eeEEEcCC
Q 020021 104 RLLSLH-DNKYLRYFK---GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-R------PAAAYDDQ 172 (332)
Q Consensus 104 ~v~d~~-~~~~~~~~~---~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~------~~~~~~~~ 172 (332)
|++.+. ....+..+. -+........|+.....|.-- .+++|.+|++..-+....+..+. . ......+.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 888871 122233332 222333445566533322222 67899999987666666665541 1 11222344
Q ss_pred CeEEEEEeCCEEEEEECcc
Q 020021 173 GLVFAVAFGGYIRMFDARK 191 (332)
Q Consensus 173 ~~~~~~~~~~~i~vwd~~~ 191 (332)
...+..+.+++|.+.|+..
T Consensus 288 ~nRvLLs~~nkIyLld~~~ 306 (670)
T PF10395_consen 288 PNRVLLSVNNKIYLLDLKF 306 (670)
T ss_pred CCeEEEEcCCEEEEEeehh
Confidence 5555677788999999753
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.30 E-value=0.86 Score=45.39 Aligned_cols=105 Identities=21% Similarity=0.362 Sum_probs=61.8
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceE-----------EEECCCCCEEEEEcCCCcEEEE
Q 020021 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE-----------ASFSPEGMFVISGSGDGSVYAW 278 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~spdg~~l~sgs~Dg~i~vW 278 (332)
..+-|-+...++..+-.++.|++....+... ..++ .|...++. -..||||..+|.+..||.++.|
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r---sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR---SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHH---hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 3344555556667777778888766543221 1122 13232222 2479999999999999998888
Q ss_pred ECC-----CCceEEEecCCCCCCceEEe--CCC---------eeEEEeccc---eEEEec
Q 020021 279 SVR-----SGKEVASWMSFDTEPPVIKW--TPG---------SLMFVTGSS---ELSFWI 319 (332)
Q Consensus 279 d~~-----~~~~~~~~~~~~~~v~~l~~--sp~---------~~~l~t~~~---d~~~w~ 319 (332)
.+- .-++++.+..|++.. .++| +.. -+++++++. +.++|.
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p-~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHP-RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCC-ceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 762 234466677777432 2333 222 245666654 377774
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.87 E-value=12 Score=36.59 Aligned_cols=109 Identities=10% Similarity=0.126 Sum_probs=64.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEc--cCCCEEEEecCCCCCceeEEEEcc---
Q 020021 36 RISSMDFHKSSSYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFT--SHPTTVIYSSKNGWDESLRLLSLH--- 109 (332)
Q Consensus 36 ~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~s~~g~d~~v~v~d~~--- 109 (332)
..+-+.-|.-++..+.-+.-.++.|||...+.....-. .....|..+.|. |++..+++. |..+.|.++--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV---Gf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV---GFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE---EcCcEEEEEEccchh
Confidence 34444555544444444445689999998877443322 234456666665 455555544 446777776432
Q ss_pred --CCc----eEE--Eeeccc-ccEEEEEecCCCCeEEEeeCCCcEEEEe
Q 020021 110 --DNK----YLR--YFKGHH-DRVVSLSLCSSKDCFISGSLDRTVLLWD 149 (332)
Q Consensus 110 --~~~----~~~--~~~~h~-~~V~~v~~~~~~~~l~s~s~Dg~i~iWd 149 (332)
+.. .++ .+..|+ .+|....|.++|..++.+|. .+.+.|
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 111 122 234566 68999999999987776654 455655
No 436
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.24 E-value=27 Score=29.64 Aligned_cols=103 Identities=13% Similarity=0.202 Sum_probs=65.2
Q ss_pred eeEEEcCCCCE-EEEEcCCCeEEEEE--ccCCeEeEE---eeecC-C--CCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 210 NVVKFSNDGRL-MLLTTMEGHIHVLD--SFRGTLLST---YNVKP-V--SRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 210 ~~v~~s~dg~~-l~~~~~dg~i~i~d--~~~~~~~~~---~~~~~-~--~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
+.++++.|.+. ...-+.+-.|..|| ..+|.+... +.+.. . .....-..+...+|...++.-..++|.-.|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 56778877754 45567788888888 555543321 11111 0 0011112344557777777777889999999
Q ss_pred CCCceEEEecCCCCCCceEEeCCC--eeEEEecc
Q 020021 281 RSGKEVASWMSFDTEPPVIKWTPG--SLMFVTGS 312 (332)
Q Consensus 281 ~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~t~~ 312 (332)
.+|+.+.++.--...+++.+|--- ..+.+|+.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 999999888766788999999543 23444443
No 437
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=81.78 E-value=51 Score=31.90 Aligned_cols=70 Identities=7% Similarity=0.094 Sum_probs=42.0
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE-cCCCcEEEEECC
Q 020021 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVYAWSVR 281 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg-s~Dg~i~vWd~~ 281 (332)
..|.++|...++++=+....-.+.+.......-.... ...+.+.+.+|.+||+.|+.+ +.-=.-+|||-.
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4577888888877766555444444432221111111 123567788999999877766 433367899854
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.50 E-value=63 Score=32.57 Aligned_cols=93 Identities=9% Similarity=0.111 Sum_probs=53.7
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCC--CeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccC
Q 020021 33 YNGRISSMDFHKSSSYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD 110 (332)
Q Consensus 33 h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~ 110 (332)
-...|..|.++|+|.+||-.|..+ |.|-.+-. |.. ..+......+ .+|.+.+..
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i----------------------~Crt~~v~~ 138 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEI----------------------NCRTVPVDE 138 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcce----------------------eEEEEEech
Confidence 345688999999999998888755 33433321 000 0011111111 122222211
Q ss_pred CceEEEeecccccEEEEEecCC---CCeEEEeeCCCcEEEEeCCC
Q 020021 111 NKYLRYFKGHHDRVVSLSLCSS---KDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 111 ~~~~~~~~~h~~~V~~v~~~~~---~~~l~s~s~Dg~i~iWd~~~ 152 (332)
. +. ...+...|..+.|+|. +.+|+-=..|+++|+||+..
T Consensus 139 ~--~~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 139 R--FF-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred h--hc-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1 11 1234567889999986 46888888999999999864
No 439
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.38 E-value=22 Score=30.39 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=61.7
Q ss_pred EEcCCCCEEEEEcCC---CeEEEEEccC---CeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-cEEEEECCC--C
Q 020021 213 KFSNDGRLMLLTTME---GHIHVLDSFR---GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRS--G 283 (332)
Q Consensus 213 ~~s~dg~~l~~~~~d---g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-~i~vWd~~~--~ 283 (332)
++-+||+++.+|+.. ..+++++... .....+....-....+-..+.--|||+.|+.|+.+. +...|.-.. .
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 467899999887642 3588888644 111111100001122223345558999999998875 344444321 1
Q ss_pred ceEEE-ecCC------CCCCceEEeCCCeeEEEeccceEEEeccccc
Q 020021 284 KEVAS-WMSF------DTEPPVIKWTPGSLMFVTGSSELSFWIPDLS 323 (332)
Q Consensus 284 ~~~~~-~~~~------~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~~ 323 (332)
..... +... ...-.-+-..|||++|+.+..+-.++++...
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n 199 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN 199 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence 11111 1110 0111345568999999999988888888654
No 440
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.94 E-value=59 Score=30.72 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=26.3
Q ss_pred cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCc
Q 020021 119 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153 (332)
Q Consensus 119 ~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~ 153 (332)
.....-+.++|.||++.|++--..|.|++++....
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34456688999999988887765699999875443
No 441
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=78.88 E-value=7.7 Score=37.63 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=51.1
Q ss_pred hcccceeEeccCCCcEEEEEECCCCCEEEEEeCCC-cEEEEEcCC-----CeeeEEeeec-----ccceeEEEEccCCCE
Q 020021 22 QSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDE-SIRLYDVTA-----ATCLKTINSK-----KYGVDLVCFTSHPTT 90 (332)
Q Consensus 22 ~~~~~~~~l~~h~~~I~~i~~s~dg~~l~tgs~D~-tv~iwd~~~-----~~~~~~~~~~-----~~~v~~~~~~~~~~~ 90 (332)
.++....+|++|..+|..++|.+.+..+++++--| .|.++.+.. +.+.+.+..+ ...+..+||+.....
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~ 382 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTI 382 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcce
Confidence 46788889999999999999999999999998765 344444321 1112222222 123456778877777
Q ss_pred EEEecCCC
Q 020021 91 VIYSSKNG 98 (332)
Q Consensus 91 ~~~~s~~g 98 (332)
+..++..|
T Consensus 383 r~~gsc~G 390 (788)
T KOG2109|consen 383 RTAGSCEG 390 (788)
T ss_pred EeecccCC
Confidence 77665544
No 442
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.78 E-value=80 Score=32.13 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=44.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeEEeeeccccee-------------EEEEcc--CCCEEEEecCC-------CCCcee
Q 020021 46 SSYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-------------LVCFTS--HPTTVIYSSKN-------GWDESL 103 (332)
Q Consensus 46 g~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~~~~s~~-------g~d~~v 103 (332)
+..++.++.|+.+.-.|..+|+.+..+.... .+. ...-.| .+..++.++.. ..++.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 4578888899999999999999886553211 000 000000 12345555321 124679
Q ss_pred EEEEccCCceEEEee
Q 020021 104 RLLSLHDNKYLRYFK 118 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~ 118 (332)
+-+|.++|+.+..+.
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999999887664
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.77 E-value=37 Score=28.33 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=86.7
Q ss_pred CCCeEEEeeCC--CcEEEEeCCCceEEEEEEecCceeEEEc-----CCCeEEEEEe-CCEEEEEECccCCCCCeeEEEec
Q 020021 132 SKDCFISGSLD--RTVLLWDQRAEKCQGLLRVQGRPAAAYD-----DQGLVFAVAF-GGYIRMFDARKYEKGPFDIFSVG 203 (332)
Q Consensus 132 ~~~~l~s~s~D--g~i~iWd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~ 203 (332)
++..+.|.+.- ..|+.||+++++.......+. ...|. -...+..... ++.-..+|.++.+. +..++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~--lg~~~y~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE--LGRFSYE 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhh--hcccccC
Confidence 45667777654 479999999887655444331 11111 1122222332 34444455443321 1111211
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeec--CCCCCcceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021 204 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 204 ~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
|+ .=....|+.-+..+....+++.-|..+-..+.+.... ..+......+.| -||..+|-.-.+-.|-.-+..
T Consensus 131 Ge-----GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 131 GE-----GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred Cc-----ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence 11 1223345555666655556666665443222222111 111122233333 477777777666667777778
Q ss_pred CCceEEEe------------cCCCCCCceEEeCCCe-eEEEeccc
Q 020021 282 SGKEVASW------------MSFDTEPPVIKWTPGS-LMFVTGSS 313 (332)
Q Consensus 282 ~~~~~~~~------------~~~~~~v~~l~~sp~~-~~l~t~~~ 313 (332)
+|+.+.-+ ..+..-.+.+++-|++ ++++||--
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 87765432 1233345779999987 78888753
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.69 E-value=10 Score=21.84 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCCEEEE-EeCCCcEEEEEcCCCeeeEEeee
Q 020021 44 KSSSYLVT-ASDDESIRLYDVTAATCLKTINS 74 (332)
Q Consensus 44 ~dg~~l~t-gs~D~tv~iwd~~~~~~~~~~~~ 74 (332)
|++++|.. .-.+++|.++|+.+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56765544 55688999999998887776654
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.69 E-value=22 Score=28.60 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=24.7
Q ss_pred cceEEEECCCC------CEEEEEcCCCcEEEEECCC
Q 020021 253 STLEASFSPEG------MFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 253 ~~~~v~~spdg------~~l~sgs~Dg~i~vWd~~~ 282 (332)
.+..++|||-| ..||....++.+.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 56789999954 5888889999999998763
No 446
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.26 E-value=23 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=25.0
Q ss_pred cCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEE
Q 020021 225 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG 269 (332)
Q Consensus 225 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sg 269 (332)
..+|++..||+.+++..-.... -.....|+++||+.+|+.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~----L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDG----LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEE----ESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhC----CCccCeEEEcCCCCEEEEE
Confidence 3456788899988765322221 1233579999999998877
No 447
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.77 E-value=7.7 Score=21.10 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEcCCCcEEEEECCCCceEEE
Q 020021 265 FVISGSGDGSVYAWSVRSGKEVAS 288 (332)
Q Consensus 265 ~l~sgs~Dg~i~vWd~~~~~~~~~ 288 (332)
.++.++.+|.++..|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 567788899999999999887654
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.76 E-value=29 Score=32.99 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=22.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEE
Q 020021 35 GRISSMDFHKSSSYLVTASDDESIRLY 61 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~tv~iw 61 (332)
-+|.-|..++.|..++-+|-||-+..+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 457788899999999999999977654
No 449
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=74.03 E-value=9.2 Score=20.28 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=17.1
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEE
Q 020021 210 NVVKFSNDGRLMLLTTMEGHIHVL 233 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~dg~i~i~ 233 (332)
..++++++|.++++-....+|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 456777888877777777777654
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.68 E-value=14 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=20.5
Q ss_pred EeccCCCcEEEEEECCCCCEEEE-EeCC--CcEEEE
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVT-ASDD--ESIRLY 61 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~t-gs~D--~tv~iw 61 (332)
.+....+.-....|||||++|+= +..+ +...||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34445566778899999987754 4444 565555
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.61 E-value=87 Score=29.10 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=39.3
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEE
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAW 278 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vW 278 (332)
.+..+.|.++++.+++| ..|.+.... ..|+.-........-.....++.|.++++-+++| .+|.|--|
T Consensus 329 ~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 46778899888865554 666666543 3344322211001112345578888887777766 67876554
No 452
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=70.70 E-value=1.1e+02 Score=29.84 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=66.6
Q ss_pred CCCCCceeEEEcCCC----CEEEEEcCCCeEEEEEcc-----CCeEeEEeeecCCCCCcc--eEEEECCCCCEEEEEcCC
Q 020021 204 GDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSF-----RGTLLSTYNVKPVSRNST--LEASFSPEGMFVISGSGD 272 (332)
Q Consensus 204 ~~~~~v~~v~~s~dg----~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~~--~~v~~spdg~~l~sgs~D 272 (332)
|+...|..+.++|-+ .-+++---..+|.+|.+. +++.+......-...-++ -.+.|+|....|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 344567788888754 345566677899999974 223332211110000111 135688988877766555
Q ss_pred CcEEEEECCCC-ceEEEecCCCCCCceEEeCCCeeEEEe-ccceEEEecc
Q 020021 273 GSVYAWSVRSG-KEVASWMSFDTEPPVIKWTPGSLMFVT-GSSELSFWIP 320 (332)
Q Consensus 273 g~i~vWd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~t-~~~d~~~w~~ 320 (332)
..--+.++... ..++.=..-.+.|.|-+|.+||++|+. .++-+.-+.|
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiW 183 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIW 183 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEe
Confidence 54445666432 233322244567999999999976655 4555554444
No 453
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=70.27 E-value=94 Score=28.95 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=23.7
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccC
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR 237 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~ 237 (332)
.+..++..+..+.+.+-+.+|.|++||+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 367778888889999999999999999974
No 454
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=70.17 E-value=36 Score=34.73 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEE-EcCCC-----cEEEEECCC-CceEEEe
Q 020021 217 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-GSGDG-----SVYAWSVRS-GKEVASW 289 (332)
Q Consensus 217 dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~s-gs~Dg-----~i~vWd~~~-~~~~~~~ 289 (332)
.+++.......+.+.+.|........ .+. ....++..=+|||||++||- .+-++ .|++-|+.+ +..+..+
T Consensus 318 ~tkiAfv~~~~~~L~~~D~dG~n~~~-ve~--~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl 394 (912)
T TIGR02171 318 KAKLAFRNDVTGNLAYIDYTKGASRA-VEI--EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL 394 (912)
T ss_pred eeeEEEEEcCCCeEEEEecCCCCceE-EEe--cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe
Confidence 34444444445688888876544332 211 12345555689999999998 45555 599999966 3334455
Q ss_pred cCCCCCCceEEeCCCee
Q 020021 290 MSFDTEPPVIKWTPGSL 306 (332)
Q Consensus 290 ~~~~~~v~~l~~sp~~~ 306 (332)
...++.|+.-...++|-
T Consensus 395 ~ve~aaiprwrv~e~gd 411 (912)
T TIGR02171 395 PVENAAIPRWRVLENGD 411 (912)
T ss_pred ecccccccceEecCCCC
Confidence 55677777766667664
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=69.58 E-value=1.1e+02 Score=29.28 Aligned_cols=105 Identities=9% Similarity=0.076 Sum_probs=47.9
Q ss_pred CCCEEEEEeCC--CcEEEEEcCCCeee--EEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceEEE--ee
Q 020021 45 SSSYLVTASDD--ESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRY--FK 118 (332)
Q Consensus 45 dg~~l~tgs~D--~tv~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~~~--~~ 118 (332)
+|.+.+.||.+ .++-.||..+++=. ..+....... .+...++...+.|...+....+..||..+++-... +.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 46666777764 35777887654321 1111111111 11222333333333222234577788766542211 11
Q ss_pred cccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEE
Q 020021 119 GHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ 156 (332)
Q Consensus 119 ~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~ 156 (332)
...... ++ ..-+++..+.|+ .+.++|.++++..
T Consensus 396 ~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 396 YPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWT 428 (480)
T ss_pred Cccccc-eE-EEECCEEEEECC---ceEEecCCCCcEe
Confidence 011111 11 123456666664 4678888777654
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.36 E-value=71 Score=30.56 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=50.3
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEc---------cCCeEeE---Eeee-----cCCCCCcceEEEECCCC---CEEE
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDS---------FRGTLLS---TYNV-----KPVSRNSTLEASFSPEG---MFVI 267 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~---------~~~~~~~---~~~~-----~~~~~~~~~~v~~spdg---~~l~ 267 (332)
.|..+..|+.|+.++-.+.+|-+.+.=. ..|+..- ++.. .....-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4566788999999999999987655321 1221111 1100 00112233457899975 6777
Q ss_pred EEcCCCcEEEEECCCCceE
Q 020021 268 SGSGDGSVYAWSVRSGKEV 286 (332)
Q Consensus 268 sgs~Dg~i~vWd~~~~~~~ 286 (332)
.-+.|.+||+||+...+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7889999999999876654
No 457
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=68.82 E-value=1e+02 Score=28.87 Aligned_cols=181 Identities=13% Similarity=0.176 Sum_probs=82.6
Q ss_pred CCCCCEEEEEeCC------CcEEEEEcCCCeeeEEeeecccc---eeEEEEccCCCEEEEecCCC---------------
Q 020021 43 HKSSSYLVTASDD------ESIRLYDVTAATCLKTINSKKYG---VDLVCFTSHPTTVIYSSKNG--------------- 98 (332)
Q Consensus 43 s~dg~~l~tgs~D------~tv~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~s~~g--------------- 98 (332)
-|+|++++|+=.| +.+.+.|-++.+.+......... -..+-+.|..+.++++.-+.
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 3778777774322 46788888888877776543221 23455667666676664221
Q ss_pred --CCceeEEEEccCCceEEEeeccc--ccEEEEEecCCC--C-eEEEeeCCCcEEEEeC-CCceEE--EEEEecCc----
Q 020021 99 --WDESLRLLSLHDNKYLRYFKGHH--DRVVSLSLCSSK--D-CFISGSLDRTVLLWDQ-RAEKCQ--GLLRVQGR---- 164 (332)
Q Consensus 99 --~d~~v~v~d~~~~~~~~~~~~h~--~~V~~v~~~~~~--~-~l~s~s~Dg~i~iWd~-~~~~~~--~~~~~~~~---- 164 (332)
+-+++.+||+..++.++++.--. .....+.|..+. . -|+.+--.++|-.|-- +.+... .++..+..
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 13689999999999988876332 235677776443 2 3454444455544432 333321 12222111
Q ss_pred -----------------eeEEEcCCCeEEEEE--eCCEEEEEECccCCCCCee-EEEecCCC--------------CCce
Q 020021 165 -----------------PAAAYDDQGLVFAVA--FGGYIRMFDARKYEKGPFD-IFSVGGDI--------------SDAN 210 (332)
Q Consensus 165 -----------------~~~~~~~~~~~~~~~--~~~~i~vwd~~~~~~~~~~-~~~~~~~~--------------~~v~ 210 (332)
.....+.+.+++.++ ..|.||-||+....++++. ...+++.. ...+
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 122344455544444 3799999999876544332 12233221 1225
Q ss_pred eEEEcCCCCEEEE
Q 020021 211 VVKFSNDGRLMLL 223 (332)
Q Consensus 211 ~v~~s~dg~~l~~ 223 (332)
-+..|.||+.+-.
T Consensus 378 MvqlS~DGkRlYv 390 (461)
T PF05694_consen 378 MVQLSLDGKRLYV 390 (461)
T ss_dssp -EEE-TTSSEEEE
T ss_pred eEEEccCCeEEEE
Confidence 5778888865443
No 458
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=68.37 E-value=1e+02 Score=28.68 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=24.7
Q ss_pred ceEEEECCCCCEEEEEcCCCcEEEEECCC
Q 020021 254 TLEASFSPEGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 254 ~~~v~~spdg~~l~sgs~Dg~i~vWd~~~ 282 (332)
+..++..+..+.+++.+.+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 77888888889999999999999999975
No 459
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.58 E-value=18 Score=37.50 Aligned_cols=106 Identities=10% Similarity=0.052 Sum_probs=59.3
Q ss_pred ceeEEEcCCCCEEEE--EcCCCeEEEEEccCCeEeE-----Eee---ecCCCCCcceEEEECCCC-CEEEEEcCCCcEEE
Q 020021 209 ANVVKFSNDGRLMLL--TTMEGHIHVLDSFRGTLLS-----TYN---VKPVSRNSTLEASFSPEG-MFVISGSGDGSVYA 277 (332)
Q Consensus 209 v~~v~~s~dg~~l~~--~~~dg~i~i~d~~~~~~~~-----~~~---~~~~~~~~~~~v~~spdg-~~l~sgs~Dg~i~v 277 (332)
+.....++|++..++ .+++-.|..||+++-..-. .+. ..........++.|.|.= -..|....|+.|+|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 344556677765443 3444478899986432111 010 000011222345566532 23445677899999
Q ss_pred EECCCCceEEEecCCCCCCceEEeCCCeeEEEeccce
Q 020021 278 WSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTGSSE 314 (332)
Q Consensus 278 Wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~d 314 (332)
..+.-......-.......++++|+|-|++++.|..-
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn 219 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN 219 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCC
Confidence 8775433322222344567999999999999998754
No 460
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=65.70 E-value=2e+02 Score=31.06 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=18.0
Q ss_pred CCCceEEeCCCeeEEEeccceEEEe
Q 020021 294 TEPPVIKWTPGSLMFVTGSSELSFW 318 (332)
Q Consensus 294 ~~v~~l~~sp~~~~l~t~~~d~~~w 318 (332)
..+.+|+.+|||...++.....++.
T Consensus 662 nsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 662 NSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred CCcceEEECCCCcEEEecCCchhhh
Confidence 3456799999998877766655554
No 461
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.05 E-value=36 Score=30.66 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCeEEEEEccCCeEe-EEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEE
Q 020021 217 DGRLMLLTTMEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVY 276 (332)
Q Consensus 217 dg~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~ 276 (332)
.|.++++.-..+.|...++..+..+ ..-.........+..+++.|||.++++-+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 5667777777788888887655332 22222222333677899999999999888888875
No 462
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=64.99 E-value=1.2e+02 Score=28.38 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=82.7
Q ss_pred CCCEEEEEe-CCCcEEEEEcCC----CeeeEEeeec---c----cceeEEEEccCCCEEEEec--CCC-CCceeEEEEcc
Q 020021 45 SSSYLVTAS-DDESIRLYDVTA----ATCLKTINSK---K----YGVDLVCFTSHPTTVIYSS--KNG-WDESLRLLSLH 109 (332)
Q Consensus 45 dg~~l~tgs-~D~tv~iwd~~~----~~~~~~~~~~---~----~~v~~~~~~~~~~~~~~~s--~~g-~d~~v~v~d~~ 109 (332)
+.++|+..+ ....|.|.|+.+ .+..+.++.. . ...+-+-+-|++..++++- ..| .-+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456666666 667899999874 2333444431 1 1122334456665554431 111 12456677777
Q ss_pred CCceEEEeecc---cccEEEEEecCCCCeEEEeeC--------------------CCcEEEEeCCCceEEEEEEecCc--
Q 020021 110 DNKYLRYFKGH---HDRVVSLSLCSSKDCFISGSL--------------------DRTVLLWDQRAEKCQGLLRVQGR-- 164 (332)
Q Consensus 110 ~~~~~~~~~~h---~~~V~~v~~~~~~~~l~s~s~--------------------Dg~i~iWd~~~~~~~~~~~~~~~-- 164 (332)
+.+........ ...-...-+.|..+.++|..+ -.++.+||+++.+.+.++.+...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 66555444322 222344556777778888764 35899999999998888866532
Q ss_pred -e-eEEE-c-CCC--eEEEEEeCCEEEEE-ECccCCCCCeeEEEe-----cCC------------CCCceeEEEcCCCCE
Q 020021 165 -P-AAAY-D-DQG--LVFAVAFGGYIRMF-DARKYEKGPFDIFSV-----GGD------------ISDANVVKFSNDGRL 220 (332)
Q Consensus 165 -~-~~~~-~-~~~--~~~~~~~~~~i~vw-d~~~~~~~~~~~~~~-----~~~------------~~~v~~v~~s~dg~~ 220 (332)
+ -..+ + +.. .++.++..+.|-.| ......=....+..+ .+- +.-++.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 1 1122 2 222 23334444444333 211110000001111 111 123577889999987
Q ss_pred E-EEEcCCCeEEEEEccCC
Q 020021 221 M-LLTTMEGHIHVLDSFRG 238 (332)
Q Consensus 221 l-~~~~~dg~i~i~d~~~~ 238 (332)
| +++-..|.|+-||+...
T Consensus 326 LYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEETTTTEEEEEE-SST
T ss_pred EEEEcccCCcEEEEecCCC
Confidence 6 55679999999998654
No 463
>PRK13684 Ycf48-like protein; Provisional
Probab=64.97 E-value=1.1e+02 Score=27.63 Aligned_cols=107 Identities=10% Similarity=0.113 Sum_probs=54.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEE-EEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCC
Q 020021 34 NGRISSMDFHKSSSYLVTASDDESIRL-YDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN 111 (332)
Q Consensus 34 ~~~I~~i~~s~dg~~l~tgs~D~tv~i-wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~ 111 (332)
.+.+.++.+.|++.+++. +..|.+.. +|- .++.-..+. .....+..+.+.+++..++.+. .+.+++-.-..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEEEEccCCCC
Confidence 467889999998766654 44454332 221 122112222 1223466677778777665543 234433222233
Q ss_pred ceEEEeecc----cccEEEEEecCCCCeEEEeeCCCcEEE
Q 020021 112 KYLRYFKGH----HDRVVSLSLCSSKDCFISGSLDRTVLL 147 (332)
Q Consensus 112 ~~~~~~~~h----~~~V~~v~~~~~~~~l~s~s~Dg~i~i 147 (332)
..-.....+ ...+.++.+.+++. ++.++.+|.+..
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~ 284 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV 284 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE
Confidence 221111111 13467888888765 455666776543
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=64.19 E-value=76 Score=31.75 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=66.2
Q ss_pred EEEEEEC--CCCCEEEEEeCCCcEEEEEcCC-------C----e---------eeEEeeecccceeEEEEc--cCCCEEE
Q 020021 37 ISSMDFH--KSSSYLVTASDDESIRLYDVTA-------A----T---------CLKTINSKKYGVDLVCFT--SHPTTVI 92 (332)
Q Consensus 37 I~~i~~s--~dg~~l~tgs~D~tv~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~~ 92 (332)
|+-|... -....|+.+.+||.|.+|.+++ . . +...+ .....++.++++ .....++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEE
Confidence 5555544 2346899999999999997631 0 0 00111 112245677777 4444455
Q ss_pred EecCCCCCceeEEEEccCCc-eEEEeecccccEEEEEecCCC---C---eEEEeeCCCcEEEEeC
Q 020021 93 YSSKNGWDESLRLLSLHDNK-YLRYFKGHHDRVVSLSLCSSK---D---CFISGSLDRTVLLWDQ 150 (332)
Q Consensus 93 ~~s~~g~d~~v~v~d~~~~~-~~~~~~~h~~~V~~v~~~~~~---~---~l~s~s~Dg~i~iWd~ 150 (332)
.++ ++..=+|..+.+...+ +...-..|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 182 VSs-Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSS-NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eec-CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 444 4444445555553222 221122367789999998643 2 7888999999888877
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=63.72 E-value=90 Score=29.37 Aligned_cols=164 Identities=12% Similarity=0.127 Sum_probs=83.0
Q ss_pred EeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecCcee--------EEE-cCCC-eEEEEEeCCEEE
Q 020021 116 YFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--------AAY-DDQG-LVFAVAFGGYIR 185 (332)
Q Consensus 116 ~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~--------~~~-~~~~-~~~~~~~~~~i~ 185 (332)
.+..-...|..+-..|||+.+.--+. .++.+.++.+.......-....+. ..+ -..+ .++.+..||-|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 34445566777888899996654433 567777765543322111111000 000 1122 344455577665
Q ss_pred EE-ECccCCCCCeeEEEecC-CCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC
Q 020021 186 MF-DARKYEKGPFDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG 263 (332)
Q Consensus 186 vw-d~~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg 263 (332)
=| |+|......+....... ..+++..+.--...+.+.+-..+|++..+....-+.+ -+.. ......-+++||.+
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~---~~~~~~~~~~Sp~~ 369 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFER---AYQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-ehhh---hhcCcceeeeCccc
Confidence 54 77765443333221100 1122332222222344556666777777664432222 1110 01123347999999
Q ss_pred CEEEEEcCCCcEEEEECCCCce
Q 020021 264 MFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 264 ~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
.++++- ..|.|+++.+++...
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred chheee-cCCceEEEEecCCCC
Confidence 999876 457799999988654
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=63.12 E-value=28 Score=29.11 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=35.7
Q ss_pred CEEEEEcCCCcEEEEECCC--CceEEEecCCCCCCceEEeCCCeeEEEeccc
Q 020021 264 MFVISGSGDGSVYAWSVRS--GKEVASWMSFDTEPPVIKWTPGSLMFVTGSS 313 (332)
Q Consensus 264 ~~l~sgs~Dg~i~vWd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~t~~~ 313 (332)
.+|+.+.....|.+|++.+ .+....+... +.|..+.++..|.+++|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 4554445567899999973 3345566665 57889999999999999644
No 467
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=62.87 E-value=1.3e+02 Score=28.06 Aligned_cols=146 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred cCCCCeEEEeeCCCcEEEEeCCCce-----EEEEEEecCce------eEEEcCCCeEEEEEeCCEEEEEECccCCCC---
Q 020021 130 CSSKDCFISGSLDRTVLLWDQRAEK-----CQGLLRVQGRP------AAAYDDQGLVFAVAFGGYIRMFDARKYEKG--- 195 (332)
Q Consensus 130 ~~~~~~l~s~s~Dg~i~iWd~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~--- 195 (332)
....+.++.||..|.++|++...+. ..-..++.... ..........+++=.-..+.+|.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Q ss_pred ----Cee-EEEecCCCCCceeEEEcCCC----CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEE
Q 020021 196 ----PFD-IFSVGGDISDANVVKFSNDG----RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV 266 (332)
Q Consensus 196 ----~~~-~~~~~~~~~~v~~v~~s~dg----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l 266 (332)
.+. .+.+.-+....+-+...-.| .++.+-+.||.+.+|+-..-.....+.. ....++ ++|.|....+
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgP---l~Y~~~tDsf 189 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGP---LCYCPRTDSF 189 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcC---eEEeecCCEE
Q ss_pred EEEcCCCcEEEEE
Q 020021 267 ISGSGDGSVYAWS 279 (332)
Q Consensus 267 ~sgs~Dg~i~vWd 279 (332)
++++.+..+..+.
T Consensus 190 vt~sss~~l~~Yk 202 (418)
T PF14727_consen 190 VTASSSWTLECYK 202 (418)
T ss_pred EEecCceeEEEec
No 468
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=62.44 E-value=27 Score=30.07 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=36.6
Q ss_pred CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEEC-CCCCEEEEEcCCCcEEEE
Q 020021 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISGSGDGSVYAW 278 (332)
Q Consensus 219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~s-pdg~~l~sgs~Dg~i~vW 278 (332)
..++.|+.+|.|+|.|...-..+...........-...=.|. -|.+.+ .+..||.|++-
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~-Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIV-VACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEE-EEeCCCEEEEE
Confidence 578999999999999988777777666543221000011243 344444 45578888764
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.96 E-value=1.2e+02 Score=32.36 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=48.5
Q ss_pred ecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccC--------CeEeE-----------E-eeecCCCCCcceEEEECC
Q 020021 202 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--------GTLLS-----------T-YNVKPVSRNSTLEASFSP 261 (332)
Q Consensus 202 ~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~--------~~~~~-----------~-~~~~~~~~~~~~~v~~sp 261 (332)
+..+...+++++...+|+.+.+|-++ .++=+-... ...+. + +.....+..++..++...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 33344578888888999987766554 433211111 00000 0 011113345667777777
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 020021 262 EGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~ 282 (332)
.-+.+.+-++-|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 778888889999999999976
No 470
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=61.84 E-value=25 Score=20.01 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEcCCCcEEEEECCCCceEEEec
Q 020021 266 VISGSGDGSVYAWSVRSGKEVASWM 290 (332)
Q Consensus 266 l~sgs~Dg~i~vWd~~~~~~~~~~~ 290 (332)
+..++.||.|+-.|..+|+.+-.+.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4456899999999999999887654
No 471
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=60.97 E-value=47 Score=33.15 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=26.0
Q ss_pred cEEEEEecCCCCeEEEeeCCCcEEEEeCCCc
Q 020021 123 RVVSLSLCSSKDCFISGSLDRTVLLWDQRAE 153 (332)
Q Consensus 123 ~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~ 153 (332)
.++++.-+|.+.-+++++.||.|+++++...
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 4567777899999999999999999997544
No 472
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=60.68 E-value=48 Score=23.26 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=22.6
Q ss_pred ceEEEECCCCCEEEEEc-CCCcEEEEECCC
Q 020021 254 TLEASFSPEGMFVISGS-GDGSVYAWSVRS 282 (332)
Q Consensus 254 ~~~v~~spdg~~l~sgs-~Dg~i~vWd~~~ 282 (332)
...++++|++++|..++ ..+.|+++..++
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34689999999888874 467999998753
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=60.62 E-value=2e+02 Score=29.35 Aligned_cols=122 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCceeEEEc-------CCCCEEEEEcCCCeEEEE--------------EccCCeEeEEeeecCCCCCcceEEEECC-CCC
Q 020021 207 SDANVVKFS-------NDGRLMLLTTMEGHIHVL--------------DSFRGTLLSTYNVKPVSRNSTLEASFSP-EGM 264 (332)
Q Consensus 207 ~~v~~v~~s-------~dg~~l~~~~~dg~i~i~--------------d~~~~~~~~~~~~~~~~~~~~~~v~~sp-dg~ 264 (332)
.+|..|+|+ +..+++++-....+..+- -.....++.++........+...++|+| +.+
T Consensus 80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 80 SPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccc
Q ss_pred EEEEEcCCCcEEEEEC-----CCCceEEEecCCCCCC------c----eEEeCCCeeEEEeccce-EEEecccccccccc
Q 020021 265 FVISGSGDGSVYAWSV-----RSGKEVASWMSFDTEP------P----VIKWTPGSLMFVTGSSE-LSFWIPDLSKLGAY 328 (332)
Q Consensus 265 ~l~sgs~Dg~i~vWd~-----~~~~~~~~~~~~~~~v------~----~l~~sp~~~~l~t~~~d-~~~w~~~~~~~~~~ 328 (332)
.+|.....|.-.||++ .....+.....+.+.+ . .+.|.++-..|+..+.. +.+.+.+.....++
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~ 239 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEY 239 (765)
T ss_pred eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCccch
No 474
>PLN02193 nitrile-specifier protein
Probab=59.94 E-value=1.6e+02 Score=27.97 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCC----CeEEEEEccCCeEeEEeee--cCCCCCcceEEEECCCCCEEEEEcCC--------------CcE
Q 020021 216 NDGRLMLLTTME----GHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGD--------------GSV 275 (332)
Q Consensus 216 ~dg~~l~~~~~d----g~i~i~d~~~~~~~~~~~~--~~~~~~~~~~v~~spdg~~l~sgs~D--------------g~i 275 (332)
.++++++.++.+ ..+.+||+.+.+-...-.. .+..+... .+...+++.++.|+.+ ..+
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv 404 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF--ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGT 404 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee--EEEEECCEEEEECCccCCccccccCccceeccE
Confidence 367888877755 4688999887654321111 11111111 1223467888888753 247
Q ss_pred EEEECCCCce
Q 020021 276 YAWSVRSGKE 285 (332)
Q Consensus 276 ~vWd~~~~~~ 285 (332)
.++|+.+.+.
T Consensus 405 ~~~D~~t~~W 414 (470)
T PLN02193 405 FALDTETLQW 414 (470)
T ss_pred EEEEcCcCEE
Confidence 8889887654
No 475
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.71 E-value=17 Score=20.98 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=16.2
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 020021 262 EGMFVISGSGDGSVYAWSVRS 282 (332)
Q Consensus 262 dg~~l~sgs~Dg~i~vWd~~~ 282 (332)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 566888899999999999764
No 476
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=58.24 E-value=87 Score=32.58 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=47.4
Q ss_pred CEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCC------CEEEEEcCCCcEEEEECCCCceEEEe--c
Q 020021 219 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG------MFVISGSGDGSVYAWSVRSGKEVASW--M 290 (332)
Q Consensus 219 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg------~~l~sgs~Dg~i~vWd~~~~~~~~~~--~ 290 (332)
+.++.+..+|...-+....+..+.++.-.......+.++++.++. ++++.|+.|+++++..+....++..+ .
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 344455555554444443222222332111223445567777765 79999999999999999876666544 3
Q ss_pred CCCCCCceEEe
Q 020021 291 SFDTEPPVIKW 301 (332)
Q Consensus 291 ~~~~~v~~l~~ 301 (332)
..+.++.++.+
T Consensus 630 ~l~~~~~s~~i 640 (1205)
T KOG1898|consen 630 GLSSPPESLCI 640 (1205)
T ss_pred ccCCCccceEE
Confidence 44445555444
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=56.95 E-value=72 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=23.2
Q ss_pred ccEEEEEecCCC-----C-eEEEeeCCCcEEEEeCC
Q 020021 122 DRVVSLSLCSSK-----D-CFISGSLDRTVLLWDQR 151 (332)
Q Consensus 122 ~~V~~v~~~~~~-----~-~l~s~s~Dg~i~iWd~~ 151 (332)
..|..++|||.| + .|+.-..++.+.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378899999854 2 67777888999998754
No 478
>PRK10115 protease 2; Provisional
Probab=56.74 E-value=2.2e+02 Score=28.62 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=46.7
Q ss_pred ceeEEEEccCCCEEEEecCCCCC--ceeEEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCC------CcEEEEe
Q 020021 78 GVDLVCFTSHPTTVIYSSKNGWD--ESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLD------RTVLLWD 149 (332)
Q Consensus 78 ~v~~~~~~~~~~~~~~~s~~g~d--~~v~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~D------g~i~iWd 149 (332)
.+..+.++|+++.++++...+-+ ..+++.|+.++..+...-.... ..++|.+|++.|+-...| ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 35567889999988887543222 3578889988763322211211 458999998866655443 3566777
Q ss_pred CCCc
Q 020021 150 QRAE 153 (332)
Q Consensus 150 ~~~~ 153 (332)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 7766
No 479
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=56.49 E-value=32 Score=32.65 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=46.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeEEeeecccceeEEEEccCCCEEEEecCCCCCceeEEEEc
Q 020021 45 SSSYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 108 (332)
Q Consensus 45 dg~~l~tgs~D~tv~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~ 108 (332)
.+.|+|.||.-|-||+||--.-+....+++-...|..+..+.+|+.+++.+ .+.+.+-|+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEEec
Confidence 456999999999999999765555555666666788888889999888776 456777765
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=56.30 E-value=1.4e+02 Score=26.21 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCce---E
Q 020021 210 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKE---V 286 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~---~ 286 (332)
..++.+|||..-..+...+.|--.|..+|+....-. ........|...|||...++=+.. .|.-.|-++.+. .
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL---g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL---GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEec---CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Q ss_pred EEecCCCCCCceEEeCCCeeEEEec
Q 020021 287 ASWMSFDTEPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 287 ~~~~~~~~~v~~l~~sp~~~~l~t~ 311 (332)
.....-.+......|.+.|++-.|+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~ 165 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTG 165 (353)
T ss_pred cccccCCCcccceeeCCCccEEEee
No 481
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=56.07 E-value=53 Score=27.45 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=60.3
Q ss_pred CEEEEEcCCCeEEEEEcc--CCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC------cEEEE---ECC--CCce
Q 020021 219 RLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG------SVYAW---SVR--SGKE 285 (332)
Q Consensus 219 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg------~i~vW---d~~--~~~~ 285 (332)
..+..+.....|-+|++. ..+++.+|. .-+.+..+.++..|+||+|--++. .+|+| ... ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 444444667789999987 334445553 236778899999999999984432 44554 222 1111
Q ss_pred EE-Eec---------------------CCCCCCceEEeCC-CeeEEEeccceEEEecccc
Q 020021 286 VA-SWM---------------------SFDTEPPVIKWTP-GSLMFVTGSSELSFWIPDL 322 (332)
Q Consensus 286 ~~-~~~---------------------~~~~~v~~l~~sp-~~~~l~t~~~d~~~w~~~~ 322 (332)
+. .+. +.+.++.+++--| .|++++...+.+.+|...-
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 11 111 2234556677656 5778877777788886543
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=55.31 E-value=2.3 Score=39.59 Aligned_cols=106 Identities=14% Similarity=0.223 Sum_probs=69.1
Q ss_pred EEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeeeEEee-ecccceeEEEEccCCCEEEEecCCCCCceeEEEEccCCceE
Q 020021 37 ISSMDFHKSSSYL-VTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYL 114 (332)
Q Consensus 37 I~~i~~s~dg~~l-~tgs~D~tv~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~g~d~~v~v~d~~~~~~~ 114 (332)
--.++++.+++.+ +-+-.-+.+-+||+++... +++. +..+.-....|++.....+.+. ..+.+++++..+...+
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRI 152 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhh
Confidence 3467777777654 4566778999999975322 1221 1222223356666666666553 2567999998776555
Q ss_pred EEeecccccEEEEEecCCCCeEEEeeCCCcEEE
Q 020021 115 RYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLL 147 (332)
Q Consensus 115 ~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~i 147 (332)
-.+..|..+++++++.+.+ +++.++.|.++.+
T Consensus 153 iv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 153 IVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred hhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 4555599999999998755 6788888776554
No 483
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=54.46 E-value=1.6e+02 Score=26.34 Aligned_cols=59 Identities=10% Similarity=0.266 Sum_probs=41.2
Q ss_pred EEEEEECCCCCEEEEEeCC------CcEEEEEcCCCeeeEEee---------------ecccceeEEEEccCCCEEEEec
Q 020021 37 ISSMDFHKSSSYLVTASDD------ESIRLYDVTAATCLKTIN---------------SKKYGVDLVCFTSHPTTVIYSS 95 (332)
Q Consensus 37 I~~i~~s~dg~~l~tgs~D------~tv~iwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~s 95 (332)
.-+|++.++|.++++-=.+ ..|+-++.. |+.+..+. ..+.+...+++++++..++.+.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 3478888888888887777 778888866 65554431 1233567899999998776654
Q ss_pred C
Q 020021 96 K 96 (332)
Q Consensus 96 ~ 96 (332)
.
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 3
No 484
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=53.99 E-value=1.8e+02 Score=29.73 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=25.8
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEcCCCee
Q 020021 29 SFRDYNGRISSMDFHKSSSYLVTASDDESIRLYDVTAATC 68 (332)
Q Consensus 29 ~l~~h~~~I~~i~~s~dg~~l~tgs~D~tv~iwd~~~~~~ 68 (332)
-|.||. |.+|+.+.+..+++| .+|.|.-|-++...+
T Consensus 225 gL~gh~--~~qisvs~~HslvLT--~~g~Vys~GlN~~hq 260 (1267)
T KOG0783|consen 225 GLIGHK--VIQISVSHTHSLVLT--KFGSVYSWGLNGSHQ 260 (1267)
T ss_pred cccccc--eEEEEeecceeEEEe--ecceEEEeecCcccc
Confidence 356665 888888887766665 678899998875443
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=53.56 E-value=59 Score=27.85 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=48.4
Q ss_pred EEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcC-C--CcEEEEECCC----CceEEE--ecCCCCCCceEE
Q 020021 230 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-D--GSVYAWSVRS----GKEVAS--WMSFDTEPPVIK 300 (332)
Q Consensus 230 i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~-D--g~i~vWd~~~----~~~~~~--~~~~~~~v~~l~ 300 (332)
-.+||+.+++.. .+.. .....|..-+|-|||+.|.+|+. | ..+++++..+ ...... .+.....-....
T Consensus 48 s~~yD~~tn~~r-pl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEE-eccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 357888877653 2221 11223333467799999999975 3 3688888643 122211 133344444555
Q ss_pred eCCCeeEEEeccce
Q 020021 301 WTPGSLMFVTGSSE 314 (332)
Q Consensus 301 ~sp~~~~l~t~~~d 314 (332)
-=|||+.++.|+..
T Consensus 125 ~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 125 TLPDGRVLIVGGSN 138 (243)
T ss_pred ECCCCCEEEEeCcC
Confidence 56799999888775
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=53.30 E-value=18 Score=25.38 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCEE-EEEeCCCcEEEEEcC
Q 020021 36 RISSMDFHKSSSYL-VTASDDESIRLYDVT 64 (332)
Q Consensus 36 ~I~~i~~s~dg~~l-~tgs~D~tv~iwd~~ 64 (332)
.-++|.++|++++| ++....++|++|...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34578999998876 556677899998754
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.73 E-value=63 Score=34.29 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred ecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021 118 KGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 118 ~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~ 152 (332)
..+.++|..+.+......+.+=+..|+|++||+..
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 36788999999987778889999999999999876
No 488
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.90 E-value=38 Score=35.37 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=63.7
Q ss_pred EEEEEECCCCCE--EEEEeCCCcEEEEEcCCCee-----eEEeeecc----cc--eeEEEEccCCCEEEEecCCCCCcee
Q 020021 37 ISSMDFHKSSSY--LVTASDDESIRLYDVTAATC-----LKTINSKK----YG--VDLVCFTSHPTTVIYSSKNGWDESL 103 (332)
Q Consensus 37 I~~i~~s~dg~~--l~tgs~D~tv~iwd~~~~~~-----~~~~~~~~----~~--v~~~~~~~~~~~~~~~s~~g~d~~v 103 (332)
|.-+...+|+.. ++..+.+-.|..||+..... ...+..+. .+ ..++.|.|.-......+. .|..|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dlsl 180 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLSL 180 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccch
Confidence 444445566543 44455566888999864321 11111111 11 234455554432222111 25667
Q ss_pred EEEEccCCceEEEeecccccEEEEEecCCCCeEEEeeCCCcEEEEeCCC
Q 020021 104 RLLSLHDNKYLRYFKGHHDRVVSLSLCSSKDCFISGSLDRTVLLWDQRA 152 (332)
Q Consensus 104 ~v~d~~~~~~~~~~~~h~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~ 152 (332)
++.-+........--.-...+++++|+|.|++++.|-..|++..+...-
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 7665543222111112456789999999999999999999999987543
No 489
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=51.01 E-value=1.4e+02 Score=26.61 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=44.2
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEEcc------CCeE-eEEeeecCC--CCCcceEEEECCCCCE------------EEE
Q 020021 210 NVVKFSNDGRLMLLTTMEGHIHVLDSF------RGTL-LSTYNVKPV--SRNSTLEASFSPEGMF------------VIS 268 (332)
Q Consensus 210 ~~v~~s~dg~~l~~~~~dg~i~i~d~~------~~~~-~~~~~~~~~--~~~~~~~v~~spdg~~------------l~s 268 (332)
=.++++|.+.+-++....+...+||.. ..+. +-++-..+. .....+-+.|+....+ ++-
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 357899999999999999999999975 1211 111111011 1123445555533322 456
Q ss_pred EcCCCcEEEEEC
Q 020021 269 GSGDGSVYAWSV 280 (332)
Q Consensus 269 gs~Dg~i~vWd~ 280 (332)
+++||+|.-|.-
T Consensus 106 ~tEdGTisaW~p 117 (336)
T TIGR03118 106 VTEDGTLSGWAP 117 (336)
T ss_pred EeCCceEEeecC
Confidence 789999999985
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.58 E-value=44 Score=33.34 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.4
Q ss_pred cceEEEECCCCCEEEEEcCCCcEEEEECCCCce
Q 020021 253 STLEASFSPEGMFVISGSGDGSVYAWSVRSGKE 285 (332)
Q Consensus 253 ~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~ 285 (332)
.++++.-+|.|+-+++++.||+|++++....+.
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 445566679999999999999999999977654
No 491
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=50.42 E-value=1.8e+02 Score=25.79 Aligned_cols=136 Identities=9% Similarity=0.062 Sum_probs=75.7
Q ss_pred EEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEEEEccCC---eEeEEeeecCCCCCcc
Q 020021 178 VAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG---TLLSTYNVKPVSRNST 254 (332)
Q Consensus 178 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~ 254 (332)
.-.+.-+++.|+.....+... ..+ ... -..-.+.=.|++.-++..+.-.-+.|+... .+..++... ....
T Consensus 102 ad~ssGL~IvDIS~P~sP~~~-~~l--nt~-gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~---~~d~ 174 (370)
T COG5276 102 ADWSSGLRIVDISTPDSPTLI-GFL--NTD-GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP---GGDT 174 (370)
T ss_pred EcCCCceEEEeccCCCCccee-ccc--cCC-ceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccC---CCCc
Confidence 334578999999876543221 111 000 111223334677666665555556666543 333333322 1222
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEec--CCCCCCceEEeCCCeeEEEeccceEEEecccc
Q 020021 255 LEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWM--SFDTEPPVIKWTPGSLMFVTGSSELSFWIPDL 322 (332)
Q Consensus 255 ~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~t~~~d~~~w~~~~ 322 (332)
..++. .|++-..+..|+-+.|-|+.+.....-+- .....+..+..+++.-+++.....+.+-+.+.
T Consensus 175 ~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~ 242 (370)
T COG5276 175 HDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSG 242 (370)
T ss_pred eeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCC
Confidence 34555 45666667788999999998754432221 22225667778888888877776677665544
No 492
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=48.45 E-value=3.5e+02 Score=28.50 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=82.9
Q ss_pred CCCceeEEEEccCCceEEEeecccc----cEEEEEecCCCCe-EEEeeCCCcEEEE------------eC-CCceEEEEE
Q 020021 98 GWDESLRLLSLHDNKYLRYFKGHHD----RVVSLSLCSSKDC-FISGSLDRTVLLW------------DQ-RAEKCQGLL 159 (332)
Q Consensus 98 g~d~~v~v~d~~~~~~~~~~~~h~~----~V~~v~~~~~~~~-l~s~s~Dg~i~iW------------d~-~~~~~~~~~ 159 (332)
||-..+++.|..+++.+..+.-..+ .|..+.|+..... ++.++-+-+-.+| ++ +.++.+..+
T Consensus 850 ~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell 929 (1205)
T KOG1898|consen 850 GWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL 929 (1205)
T ss_pred CccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee
Confidence 4666799999998886665542222 3566677764443 5555544443333 32 122211111
Q ss_pred ---EecCceeEEEcCCCeEEEEEeCCEEEEEECccCCCCCeeEEEecCCCCCceeEEEcCCCCEEEEEcCCCeEEE--EE
Q 020021 160 ---RVQGRPAAAYDDQGLVFAVAFGGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV--LD 234 (332)
Q Consensus 160 ---~~~~~~~~~~~~~~~~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~~~~~dg~i~i--~d 234 (332)
..++.+.+. .+-...+.++.+..+++||+-+.+.-+...+.. -+..+..+. -.+..+++|.....++. |+
T Consensus 930 h~T~~~~~v~Ai-~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~--~p~~Is~iq--t~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 930 HKTEIPGPVGAI-CPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF--IPNRISSIQ--TYGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred eccCCCccceEE-eccCCEEEEecccEEEEeeCChHHHHhhhhhcc--CceEEEEEe--ecceEEEEeeccceEEEEEEe
Confidence 112222233 333336667788999999985432111000000 011222222 23455666665555544 33
Q ss_pred ccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEEC
Q 020021 235 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSV 280 (332)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~ 280 (332)
.. +..+..+...+.+ ..++.+.+ -|-..+|-|..=|.+.+-.+
T Consensus 1005 ~~-~n~l~~fadD~~p-R~Vt~~~~-lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1005 RE-DNQLIVFADDPVP-RHVTALEL-LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred cC-CCeEEEEeCCCcc-ceeeEEEE-ecCCceeeccccCcEEEEEC
Confidence 33 2333344333322 33333333 35555665655556655544
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=46.62 E-value=1.5e+02 Score=28.32 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEc--------------CCCcEEE
Q 020021 212 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS--------------GDGSVYA 277 (332)
Q Consensus 212 v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs--------------~Dg~i~v 277 (332)
+.+-++|.++.... ..+..+|+. |+.+..+.........-..+..-|+|++|+.+. .|. |..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEE
Q ss_pred EECCCCceEEEe
Q 020021 278 WSVRSGKEVASW 289 (332)
Q Consensus 278 Wd~~~~~~~~~~ 289 (332)
+| .+|+.+..+
T Consensus 229 vd-~tG~vv~~w 239 (477)
T PF05935_consen 229 VD-PTGEVVWEW 239 (477)
T ss_dssp E--TTS-EEEEE
T ss_pred EC-CCCCEEEEE
No 494
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.63 E-value=1.3e+02 Score=30.40 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=50.8
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCC-cEEEEECCCCceE
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVYAWSVRSGKEV 286 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg-~i~vWd~~~~~~~ 286 (332)
.++...+++..+.+++.+..|-+.-.++++|+.+=+....+..... +....-+-|.|| .+|+||..+|...
T Consensus 37 k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~--------~~~~~~~iS~dg~~lr~wn~~~g~l~ 108 (910)
T KOG2103|consen 37 KVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGL--------GVPLTNTISVDGRYLRSWNTNNGILD 108 (910)
T ss_pred eEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCccc--------CcceeEEEccCCcEEEeecCCCceee
Confidence 4566788888899999999999999999999876333222111110 112222355555 7899999888665
Q ss_pred EEecCCCC
Q 020021 287 ASWMSFDT 294 (332)
Q Consensus 287 ~~~~~~~~ 294 (332)
..+.-+.+
T Consensus 109 ~~i~l~~g 116 (910)
T KOG2103|consen 109 WEIELADG 116 (910)
T ss_pred eecccccc
Confidence 55444433
No 495
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=42.80 E-value=1.3e+02 Score=26.84 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=45.9
Q ss_pred EEEccCCeEeEEeeecCCCCCcceEEEECCCCCEEEEEcCCCcEEEEECCCCceEEEecCCCCCCceEEeCCCeeEEEec
Q 020021 232 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIKWTPGSLMFVTG 311 (332)
Q Consensus 232 i~d~~~~~~~~~~~~~~~~~~~~~~v~~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~t~ 311 (332)
++|+.+++.+.+--..++ .+ .| .+|+..++-+..|.+.-+|..+|+... ....++....|+|. |.+++.+
T Consensus 189 vidv~s~evl~~GLsmPh--SP----RW-hdgrLwvldsgtGev~~vD~~~G~~e~-Va~vpG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 189 VIDIPSGEVVASGLSMPH--SP----RW-YQGKLWLLNSGRGELGYVDPQAGKFQP-VAFLPGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred EEEeCCCCEEEcCccCCc--CC----cE-eCCeEEEEECCCCEEEEEcCCCCcEEE-EEECCCCCccccee--CCEEEEE
Confidence 357777766543222111 11 11 389999999999999999988776432 23344566778888 6666655
Q ss_pred cce
Q 020021 312 SSE 314 (332)
Q Consensus 312 ~~d 314 (332)
-+.
T Consensus 259 mSk 261 (335)
T TIGR03032 259 LSK 261 (335)
T ss_pred ecc
Confidence 443
No 496
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=40.71 E-value=60 Score=18.64 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCC
Q 020021 35 GRISSMDFHKSSSYLVTASDDE 56 (332)
Q Consensus 35 ~~I~~i~~s~dg~~l~tgs~D~ 56 (332)
....+|+++++|+..++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 3478999999999999998876
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=39.85 E-value=1e+02 Score=31.42 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=48.5
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEe----eec--------CCCC----CcceEEEECCCCCEEEEEcC
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVK--------PVSR----NSTLEASFSPEGMFVISGSG 271 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~--------~~~~----~~~~~v~~spdg~~l~sgs~ 271 (332)
.|.+++...-+.+++..-.||.|.++|..+.+.+... ... .+-. ....-++|||.+.-++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 4666777777789999999999999998776554333 100 0000 12234889999999999999
Q ss_pred CCcEE
Q 020021 272 DGSVY 276 (332)
Q Consensus 272 Dg~i~ 276 (332)
||.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 99865
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=39.35 E-value=2.7e+02 Score=24.62 Aligned_cols=27 Identities=4% Similarity=-0.105 Sum_probs=18.2
Q ss_pred EEcCCCCEEEEEcCCC----eEEEEEccCCe
Q 020021 213 KFSNDGRLMLLTTMEG----HIHVLDSFRGT 239 (332)
Q Consensus 213 ~~s~dg~~l~~~~~dg----~i~i~d~~~~~ 239 (332)
+...++++++.|+.++ .+.+||..+.+
T Consensus 167 ~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 167 CVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3455788888888664 35678877654
No 499
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=38.41 E-value=3.1e+02 Score=24.91 Aligned_cols=186 Identities=16% Similarity=0.119 Sum_probs=83.8
Q ss_pred CceeEEEEccCCceEEEeecc--cccEEEEEecCCCCeEEEeeCCCcEEEEeCCCceEEEEEEecC---ceeEEEcCCCe
Q 020021 100 DESLRLLSLHDNKYLRYFKGH--HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RPAAAYDDQGL 174 (332)
Q Consensus 100 d~~v~v~d~~~~~~~~~~~~h--~~~V~~v~~~~~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~ 174 (332)
++.+.-.|.+++..+.....- ...+.+=.+..+|+ +..++.++.+...|.+++...-...... ........++.
T Consensus 77 ~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~ 155 (370)
T COG1520 77 DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGT 155 (370)
T ss_pred CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcE
Confidence 556777777777654322211 12222222223554 7778888888888887777665555544 11111112233
Q ss_pred EEEEEeCCEEEEEECccCCCCCeeEEEecCC---CCCceeEEEcCCCCEEEEEcC-CCeEEEEEccCCeEeEEeeecC-C
Q 020021 175 VFAVAFGGYIRMFDARKYEKGPFDIFSVGGD---ISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKP-V 249 (332)
Q Consensus 175 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~~---~~~v~~v~~s~dg~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~ 249 (332)
++....++.+...|..+... .+..... ...+..--...++..++.... ++.+.-+|+.+|+..-...... .
T Consensus 156 v~~~s~~g~~~al~~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~ 231 (370)
T COG1520 156 VYVGTDDGHLYALNADTGTL----KWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTI 231 (370)
T ss_pred EEEecCCCeEEEEEccCCcE----EEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeeccc
Confidence 33332344444444332111 0000000 000000001223443333222 5678888888887664422110 0
Q ss_pred CCCcc---eEEE---ECCCCCEEEEEcCCCcEEEEECCCCceEEEecC
Q 020021 250 SRNST---LEAS---FSPEGMFVISGSGDGSVYAWSVRSGKEVASWMS 291 (332)
Q Consensus 250 ~~~~~---~~v~---~spdg~~l~sgs~Dg~i~vWd~~~~~~~~~~~~ 291 (332)
....+ ..+. .--++ -+..++.++.+...|..+++.+..+..
T Consensus 232 ~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 232 GRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEec
Confidence 10000 0010 00122 224566677788888888887766544
No 500
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=38.05 E-value=2.9e+02 Score=24.50 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=49.2
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEEccCCeEeEEeeecCCCCC--cceEEEECCCCCEEEEEcCCCcEEEEECC
Q 020021 208 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN--STLEASFSPEGMFVISGSGDGSVYAWSVR 281 (332)
Q Consensus 208 ~v~~v~~s~dg~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~v~~spdg~~l~sgs~Dg~i~vWd~~ 281 (332)
.+++|...++|.+|++.-.-..|.++|..+|+.+=.+..+....- .-...++=.|-+++-.+..+++|.++|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 467788889999999999999999999999987655432200000 00112333455666566778888888873
Done!