BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020022
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/330 (58%), Positives = 239/330 (72%), Gaps = 1/330 (0%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDVNHA V A E V E VKDD+WL GEFITTVQQRGAA+IKARK
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT ++ W IV+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 302
Query: 303 LSIDEFSRKKLDLTAEELSEEKALAYSCLS 332
L I++FSR+K+DLTA+EL+EEK A+ LS
Sbjct: 303 LPINDFSREKMDLTAKELAEEKETAFEFLS 332
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/330 (58%), Positives = 239/330 (72%), Gaps = 1/330 (0%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDVNHA V A E V E VKDD+WL GEFITTVQQRGAA+IKARK
Sbjct: 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT ++ W IV+G
Sbjct: 242 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 301
Query: 303 LSIDEFSRKKLDLTAEELSEEKALAYSCLS 332
L I++FSR+K+DLTA+EL+EEK A+ LS
Sbjct: 302 LPINDFSREKMDLTAKELAEEKETAFEFLS 331
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 216/321 (67%), Gaps = 5/321 (1%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL G+ AT D A + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q+++K V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
+WGNHSS+ +PD+ HA V+ +P ELV D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
+HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LSIDEFSRKKLDLTAEELSEE 323
L I+EF+RK++++TA+EL +E
Sbjct: 297 LEINEFARKRMEITAQELLDE 317
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 332 bits (850), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 216/321 (67%), Gaps = 5/321 (1%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL G+ AT D A + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q+++K V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
+WGNHSS+ +PD+ HA V+ +P ELV D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
+HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LSIDEFSRKKLDLTAEELSEE 323
L I+EF+RK++++TA+EL +E
Sbjct: 297 LEINEFARKRMEITAQELLDE 317
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 330 bits (846), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 173/324 (53%), Positives = 215/324 (66%), Gaps = 7/324 (2%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
V+V VTGAAGQIGYALVP+IARG +LG PV L +LDI PA +AL GV+ EL D AFPL
Sbjct: 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL 84
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
L VV T D A GV IA+M G FPRK GMERKD++ N I+K Q A+ AA +C
Sbjct: 85 LDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDC 144
Query: 126 KVLVVANPANTNALI-LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
+V+VV NPANTNALI LK + +++T +TRLDHNRAL ++ K V VS V+NVII
Sbjct: 145 RVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVII 204
Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXX 244
WGNHSS+Q PD + A + T P RE +KDDA L+ +F+ V+ RGA II+ R
Sbjct: 205 WGNHSSTQVPDTDSAVIGTT----PAREAIKDDA-LDDDFVQVVRGRGAEIIQLRGLSSA 259
Query: 245 XXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCRNGEWTIVQGL 303
DH+ DW+ GTPEG +VSMGVYSD Y VP+GLI+SFP TC GEWT+V G
Sbjct: 260 MSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSGK 319
Query: 304 SIDEFSRKKLDLTAEELSEEKALA 327
+ +++L T EL EE+A A
Sbjct: 320 LNGDLGKQRLASTIAELQEERAQA 343
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 330 bits (845), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 215/321 (66%), Gaps = 5/321 (1%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL G+ AT D A + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q+++K V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
+WGNHSS +PD+ HA V+ +P ELV D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSIMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
+HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LSIDEFSRKKLDLTAEELSEE 323
L I+EF+RK++++TA+EL +E
Sbjct: 297 LEINEFARKRMEITAQELLDE 317
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/326 (51%), Positives = 218/326 (66%), Gaps = 7/326 (2%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMEL 58
MAK P+RV VTGAAGQI Y+L+ IA G MLG DQPVIL +L+IP A +AL GV ME+
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 59 VDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
D AFPLL G+ A D + A ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 119 QHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSD 178
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRAL QI+ K VS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 179 VKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
++ + +WGNHS + Y D +A ++ A+ V++++ DDAW F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query: 239 RKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWT 298
R DHI DWVLGT G W +MG+ SDGSY +P G+I+ FPVT NGE+
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYK 295
Query: 299 IVQGLSIDEFSRKKLDLTAEELSEEK 324
IVQGLSID FS++++++T EL EE+
Sbjct: 296 IVQGLSIDAFSQERINVTLNELLEEQ 321
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 323 bits (829), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 164/321 (51%), Positives = 213/321 (66%), Gaps = 5/321 (1%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L + +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL G+ AT D A + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q+++K V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
+WGNHSS+ +PD+ HA V+ +P ELV D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 XXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
+HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 LSIDEFSRKKLDLTAEELSEE 323
L I+EF+RK++++TA+EL +E
Sbjct: 297 LEINEFARKRMEITAQELLDE 317
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 323 bits (828), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 168/324 (51%), Positives = 212/324 (65%), Gaps = 5/324 (1%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAK RV VTGAAGQI Y+L+ IA G +LG DQPVIL +LD+P A A+ GV MEL D
Sbjct: 5 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDD 64
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AFPLL GVV T D A ++A++VG PR +GMERKD++S N I+ Q +AL +
Sbjct: 65 CAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEV 124
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
A+ + KVLVV NPANTNA I + AP +P KN T + RLDHNRAL Q++ K V+ ++
Sbjct: 125 ASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIE 184
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
+ +WGNHS + YPD A TA GE ++ L+ DD W FI TV +RGAAII+AR
Sbjct: 185 KLAVWGNHSPTMYPDFRFA---TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARG 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
DH+RDWVLGT G WV+MG+ SDGSY +P +IY PV C NGE+ V
Sbjct: 241 LSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRV 299
Query: 301 QGLSIDEFSRKKLDLTAEELSEEK 324
+GL ID FSR+K+D T EL EE+
Sbjct: 300 EGLEIDAFSREKMDGTLAELLEER 323
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 187/331 (56%), Gaps = 11/331 (3%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K+ + V V+GAAG I L+ +A G + G DQP+ L +L + AL GV MEL D+
Sbjct: 40 KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSL 99
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+PLL+ V D E A+++G PR GMER D++ N I+ Q AL A+
Sbjct: 100 YPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVAS 159
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
PN KV+VV NP NTNALI + AP+IP KN LTRLD NRA Q++ K V V NV
Sbjct: 160 PNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 219
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
IWGNHS++Q PD +A ++ PV E+++D WL EF VQ RG +IK
Sbjct: 220 TIWGNHSTTQVPDFLNAKIHGI----PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRS 275
Query: 243 XXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWT 298
D IR V TPEG W S GVY++G+ Y + +++S P CR +G++
Sbjct: 276 SAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMP--CRSKGDGDYE 333
Query: 299 IVQGLSIDEFSRKKLDLTAEE-LSEEKALAY 328
V+ + D++ KK+ + +E L+E+K +A+
Sbjct: 334 FVKDVIFDDYLSKKIKKSEDELLAEKKCVAH 364
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 191/331 (57%), Gaps = 11/331 (3%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K+ V + V+GAAG I L+ +A G + G DQP+ L +L + +AL GV MEL D+
Sbjct: 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL 89
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+PLL+ V D E V+ A+++G PR GMER ++ N I+ Q AL A+
Sbjct: 90 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ K V V NV
Sbjct: 150 KNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 209
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
IWGNHS++Q PD +A ++ +PV+E++K WL EF TVQ+RG A+I+
Sbjct: 210 TIWGNHSTTQVPDFLNAKIDG----RPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRS 265
Query: 243 XXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWT 298
D I+ V TPEG W S GVY+ G+ Y + +++S P CR +G++
Sbjct: 266 SAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMP--CRSKGDGDYE 323
Query: 299 IVQGLSIDEFSRKKLDLT-AEELSEEKALAY 328
+ +S D+F +++ + AE L+E+K +A+
Sbjct: 324 LATDVSNDDFLWERIKKSEAELLAEKKCVAH 354
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ + GAAG IG + A M+ + L+ P A L GV E+ F L
Sbjct: 10 KLTIVGAAGMIGSNMAQTAA---MMRLTPNLCLY----DPFAVGLEGVAEEIRHCGFEGL 62
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ T+D EA T V GG PRKEGM R+D++ N I AQ + P+CK
Sbjct: 63 N-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEI-AAQLGKDIKSYCPDCK 120
Query: 127 -VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIW 185
V+++ NPA+ L+ ++ P++ +T L LD R ++++ ++ S V N +
Sbjct: 121 HVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTY 179
Query: 186 GNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRGAAIIKARKXX 242
G H + A VN P+ +L+ D N E V + GA IIK R
Sbjct: 180 GGHGEQMAVFASTAKVNGT----PLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRS 235
Query: 243 XXXXXXXXXCDHIRDWVLGT----PEGTWVSM 270
+ IR + G P G +V++
Sbjct: 236 SFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNV 267
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137
A G ++ ++ G PRK GM R D++ N+ + + + ++++ AP V+ + NP +
Sbjct: 72 AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDAM 130
Query: 138 ALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
L++F+ +PA + + LD R +SE+ NV V DV V + G H S P
Sbjct: 131 VWALQKFS-GLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDV-TVFVLGGHGDSMVPLA 188
Query: 197 NHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR 231
++TV P+ +LVK W + + + + QR
Sbjct: 189 RYSTVAGI----PLPDLVK-MGWTSQDKLDKIIQR 218
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
++ ++ G PR GM R D+++KN I + +P+ ++VVANP + +
Sbjct: 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVE-GSPDSTIIVVANPLDVMTYVAY 129
Query: 143 EFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
E A P + + LD R I+E+L+V V DV+ ++ G H + P + TV
Sbjct: 130 E-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQ-ALLMGGHGDTMVPLPRYTTV 187
Query: 202 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
G PV +L+ DDA + E + + G I+
Sbjct: 188 ----GGIPVPQLI-DDARIE-EIVERTKGAGGEIV 216
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 37/243 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDI---PPAAEALNGVKMELVDA 61
+V V GA+G IG L +L + P++ L + DI P A L+ ++
Sbjct: 2 KVAVLGASGGIGQPLS-------LLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRAT-- 52
Query: 62 AFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
+KG + + G ++ V+ G PRK GM R D+ + N +I +A QH
Sbjct: 53 ----VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH- 107
Query: 122 APNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVS 177
P+ + +++NP N+ A + K+ P K I +T LD RA ++E + +
Sbjct: 108 CPDAMICIISNPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANAFVAELKGLDPA 166
Query: 178 DVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-AWLNGEFITTVQQRGAAII 236
V +I G+ + P ++ T P + +D + L G +Q+ G ++
Sbjct: 167 RVSVPVIGGHAGKTIIPLISQCT--------PKVDFPQDQLSTLTGR----IQEAGTEVV 214
Query: 237 KAR 239
KA+
Sbjct: 215 KAK 217
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 37/248 (14%)
Query: 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDI---PPAAEALNGVKM 56
A+ +V V GA+G IG L +L + P++ L + DI P A L+ ++
Sbjct: 25 AQNNAKVAVLGASGGIGQPLS-------LLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 77
Query: 57 ELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 116
+ +KG + + G ++ V+ G PRK GM R D+ + N +I +A
Sbjct: 78 KAA------VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAA 131
Query: 117 LEQHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL 172
QH P + V+ANP N+ A + K+ P K I +T LD RA ++E
Sbjct: 132 CAQH-CPEAMICVIANPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANTFVAELK 189
Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-AWLNGEFITTVQQR 231
+ + V +I G+ + P ++ T P + +D L G +Q+
Sbjct: 190 GLDPARVNVPVIGGHAGKTIIPLISQCT--------PKVDFPQDQLTALTGR----IQEA 237
Query: 232 GAAIIKAR 239
G ++KA+
Sbjct: 238 GTEVVKAK 245
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 33/246 (13%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAF 63
++V + GA+G++G A ++A+ +P + L ++ + L G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLAK-------EPFMKDLVLIGREHSINKLEGLREDIYDA-- 51
Query: 64 PLLKGV-------VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 116
L G V + + + ++ ++ G PRKEGM R D+ N I A
Sbjct: 52 --LAGTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKK 109
Query: 117 LEQHAAPNCKVLVVANPANT---NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173
+ + + K+ V+ NP + AL+ +F + + T LD R I++
Sbjct: 110 IAEIC--DTKIFVITNPVDVMTYKALVDSKFERN---QVFGLGTHLDSLRFKVAIAKFFG 164
Query: 174 VQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 233
V + +V+ II G H S P ++ T+ G P+++ + E I V+ +G
Sbjct: 165 VHIDEVRTRII-GEHGDSMVPLLSA----TSIGGIPIQKFERFKELPIDEIIEDVKTKGE 219
Query: 234 AIIKAR 239
II+ +
Sbjct: 220 QIIRLK 225
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDAA 62
+V + GAAG IG L ML P++ LH+ D+ A GV ++ +D
Sbjct: 10 KVAILGAAGGIGQPLA-------MLMKMNPLVSVLHLYDVVNAP----GVTADISHMDTG 58
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+++G + A TG+++ ++ G PRK GM R D+ N I K + +
Sbjct: 59 -AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK-CC 116
Query: 123 PNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
P V +++NP N+ I E A + K + +T LD RA ++E L + DV
Sbjct: 117 PRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDV 176
Query: 180 KNVIIWGNHS 189
+V + G H+
Sbjct: 177 -DVPVVGGHA 185
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDAA 62
+V + GAAG IG L ML P++ LH+ D+ A GV ++ +D
Sbjct: 46 KVAILGAAGGIGQPLA-------MLMKMNPLVSVLHLYDVVNAP----GVTADISHMDTG 94
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+++G + A TG+++ ++ G PRK GM R D+ N I K + +
Sbjct: 95 -AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAK-CC 152
Query: 123 PNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
P V +++NP N+ I E A + K + +T LD RA ++E L + DV
Sbjct: 153 PRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDV 212
Query: 180 KNVIIWGNHS 189
+V + G H+
Sbjct: 213 -DVPVVGGHA 221
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
+I ++ G PRK GM R+D++ KN I K + +H+ N ++VV+NP + I+
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
A +P + + + LD R I+ +L V + D+ N + G H + P V +
Sbjct: 126 HVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY 184
Query: 199 ATV 201
TV
Sbjct: 185 TTV 187
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
+I ++ G PRK GM R+D++ KN I K + +H+ N ++VV+NP + I+
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
A +P + + + LD R I+ +L V + D+ N + G H + P V +
Sbjct: 126 HVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY 184
Query: 199 ATV 201
TV
Sbjct: 185 TTV 187
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
+I V+ G PRK GM R+D++S N I + + +H + N ++VV+NP + I+
Sbjct: 71 DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEH-SKNPIIVVVSNPLD----IMT 125
Query: 143 EFA---PSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
A +P + + + LD R I+ +L V + DV + G H + P V +
Sbjct: 126 HVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDV-TACVLGGHGDAMVPVVKY 184
Query: 199 ATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
TV AG PV +L+ A E + + GA I+ K
Sbjct: 185 TTV---AG-IPVADLIS--AERIAELVERTRTGGAEIVNHLK 220
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 97/236 (41%), Gaps = 29/236 (12%)
Query: 13 AAGQIGYALVPMIARGVMLGTDQPVILHMLDI---PPAAEALN-GVKMELVDAAFPLLKG 68
AGQIG + ++LG ++M DI P +AL+ M L+ + +
Sbjct: 21 GAGQIGSTI------ALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG- 73
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+ E ++ ++ G PRK M R D+++ N I + A + ++ PN V+
Sbjct: 74 ----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVIIWGN 187
+ NP + KE IPA + ++ LD R +S L V+ SDV + I+ G
Sbjct: 129 CITNPLDAMVYYFKE-KSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDV-SAIVVGG 186
Query: 188 HSSSQYPDVNHATV----------NTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 233
H P + T+ + E++K A+ GE + ++ A
Sbjct: 187 HGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGSA 242
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 25/206 (12%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
++V V GAAG IG AL ++ + G++ L + DI P + V + + A +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
KG + DA A G ++ ++ G RK GM+R D+ + N I K L Q A C
Sbjct: 56 -KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK----NLVQQVAKTC 109
Query: 126 K---VLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDV 179
+ ++ NP NT I E + KN + +T LD R+ ++E Q +V
Sbjct: 110 PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV 169
Query: 180 KNVIIWGNHSS-------SQYPDVNH 198
+ V + G HS SQ P V+
Sbjct: 170 E-VPVIGGHSGVTILPLLSQVPGVSF 194
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
++ ++ G PRK G R D++ N+ + + + +H PN V+ + NP + L+
Sbjct: 75 DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGI-KHNCPNAFVICITNPLDIXVNXLQ 133
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
+F+ K + LD R ++++LNV V V+ + G H + P + V
Sbjct: 134 KFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHGDTXVPLTKXSNVA 192
Query: 203 TAAGEKPVRE 212
+ E+ V+E
Sbjct: 193 GVSLEQLVKE 202
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 25/206 (12%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
++V V GAAG IG AL ++ + G++ L + DI P + V + + A +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
KG + DA A G ++ ++ G RK GM+R D+ + N I K L Q A C
Sbjct: 56 -KGF-SGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVK----NLVQQVAKTC 109
Query: 126 K---VLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDV 179
+ ++ NP NT I E + KN + +T LD R+ ++E Q +V
Sbjct: 110 PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV 169
Query: 180 KNVIIWGNHSS-------SQYPDVNH 198
+ V + G HS SQ P V+
Sbjct: 170 E-VPVIGGHSGVTILPLLSQVPGVSF 194
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 17/194 (8%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL- 65
+V V GAAG IG AL ++ + G+D L + DI P GV +L + P
Sbjct: 5 KVAVIGAAGGIGQALALLLKNRLPAGSD----LALYDIAPVTP---GVAADL--SHIPTH 55
Query: 66 --LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
+KG A D A G ++ ++ G RK G +R D+ + N I K+ A + P
Sbjct: 56 VSIKG-YAGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAV-VCP 113
Query: 124 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
N + ++ NP NT I E A + + +T LD R+ ++E +V+
Sbjct: 114 NACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVR 173
Query: 181 NVIIWGNHSSSQYP 194
+I G+ + P
Sbjct: 174 VPVIGGHSGVTILP 187
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138
C ++ V+ G P+K G R D+++KN++I + + LV ANP +
Sbjct: 70 CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGI-FLVAANPVDILT 128
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
+F+ + I T LD +R + ++ NV V + I G H S++ +
Sbjct: 129 YATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYST 187
Query: 199 ATVNTAAGEKPVRELVKD 216
AT+ T +PVR++ K+
Sbjct: 188 ATIGT----RPVRDVAKE 201
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
++V V GAAG IG AL ++ + G++ L + DI P + V + + A +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI 55
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
KG + DA A G ++ ++ G RK GM+R D+ + N I K L Q A C
Sbjct: 56 -KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK----NLVQQVAKTC 109
Query: 126 K---VLVVANPANTNALILKE 143
+ ++ NP NT I E
Sbjct: 110 PKACIGIITNPVNTTVAIAAE 130
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 39 LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGME 98
L M+D+ + L G M+L + L +V D + V+ G ++EG
Sbjct: 48 LAMVDV--MEDKLKGEVMDLQHGSLFLKTKIVGDKD-YSVTANSKVVVVTAGARQQEGES 104
Query: 99 RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR 158
R +++ +NV+I+K + ++ +PNC ++VV+NP + + + + + I T
Sbjct: 105 RLNLVQRNVNIFKFIIPNIVKY-SPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTN 163
Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
LD R I EKL++ S I+ G H S P
Sbjct: 164 LDSARFRHLIGEKLHLHPSSCHAWIV-GEHGDSSVP 198
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
++ V+ G RK G R D+ KNV I K + ++ +LVV+NP + +++
Sbjct: 76 DVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGV-ILVVSNPVDIITYMIQ 134
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
+++ K I T LD R +SEKL V V +V II G H SQ P
Sbjct: 135 KWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYII-GEHGDSQLP 185
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + V+ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + ++ +PNC +LVV+NP + + + + + I T LD R +
Sbjct: 116 IFKFIIPNIIKY-SPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRHLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
EKL + S+ +I G H S P
Sbjct: 175 GEKLGIHPSNCHGWVI-GEHGDSSVP 199
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
E G ++ V+ G PR+ G R D+ N I + S+L++H + L +NP +
Sbjct: 67 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDL 125
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
L E + I RLD R +SE+ + V +V+ I+ G H +Q P
Sbjct: 126 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
E G ++ V+ G PR+ G R D+ N I + S+L++H + L +NP +
Sbjct: 66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDL 124
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
L E + I RLD R +SE+ + V +V+ I+ G H +Q P
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVPVF 183
Query: 197 NHATVN 202
+ +V+
Sbjct: 184 SKVSVD 189
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
E G ++ V+ G PR+ G R D+ N I + S+L++H + L +NP +
Sbjct: 66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDL 124
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
L E + I RLD R +SE+ + V +V+ I+ G H +Q P
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
E G ++ V+ G PR+ G R D+ N I + S+L++H + L +NP +
Sbjct: 67 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDL 125
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
L E + I RLD R +SE+ + V +V+ I+ G H +Q P
Sbjct: 126 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVPVF 184
Query: 197 NHATVN 202
+ +V+
Sbjct: 185 SKVSVD 190
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
E G ++ V+ G PR+ G R D+ N I + S+L++H + L +NP +
Sbjct: 66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDL 124
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
L E + I RLD R +SE+ + V +V+ I+ G H +Q P
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
+ E + + I LD R I+ + V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDD 217
T++ PV E + D
Sbjct: 187 TISGI----PVSEFIAPD 200
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
+ E + + I LD R I+ + V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDD 217
T++ PV E + D
Sbjct: 187 TISGI----PVSEFIAPD 200
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
+ E + + I LD R I+ + V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDD 217
T++ PV E + D
Sbjct: 187 TISGI----PVSEFIAPD 200
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140
G I V+ G RK GM R D+ KN I K A + ++A P K+LVV NP + I
Sbjct: 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYI 127
Query: 141 L-KEFAPSIPAKNITCL-TRLDHNRALGQISEKL-NVQVSDVKNVIIWGNHSSSQY 193
+ KE P + + +LD R + E+L N +++ I G H S +
Sbjct: 128 MWKESGK--PRNEVFGMGNQLDSQR----LKERLYNAGARNIRRAWIIGEHGDSMF 177
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 10/239 (4%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
E C +I + G +K G R +++ KN+ I+K S + + + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEV-MASGFDGIFLVATNPVDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
+F+ + I T LD R +SE +V II G H ++ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHII-GEHGDTELPVW 186
Query: 197 NHATVNTAAGEKPVRELV-KDDAWLNGEFITTVQQ-RGAAIIKARKXXXXXXXXXXXCDH 254
+HA V G PV ELV K+DA+ E V + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 255 IRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKL 313
I +L E + +++ Y DG Y I P G + L+++E +++
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 9/221 (4%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
++ V+ G P++ G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 77 DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVD-SGFNLIFLVAANPVDILTYATW 135
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
+ + + + T LD R I+E +NV V + I G H +++P +HA +
Sbjct: 136 KLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANIG 194
Query: 203 --TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVL 260
T A +K+D + + V+ IIK + I +L
Sbjct: 195 GVTIAEWVKAHPEIKEDKLV--KMFEDVRDAAYEIIKLKGATFYGIATALA--RISKAIL 250
Query: 261 GTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQ 301
E + + VY DG Y + I + V RNG I++
Sbjct: 251 -NDENAVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILE 290
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + G + V+ G ++EG R +++ +NV+
Sbjct: 57 DKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVN 116
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + +H +P+C +LVV+NP + + + + + I LD R +
Sbjct: 117 IFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLM 175
Query: 169 SEKLNVQVSDVKNVIIWGNHSSS 191
E+L V +I G H S
Sbjct: 176 GERLGVHSCSCHGWVI-GEHGDS 197
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + G + V+ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + +H +P+C +LVV+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSS 191
E+L V +I G H S
Sbjct: 175 GERLGVHSCSCHGWVI-GEHGDS 196
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 7 RVLVTGAAGQIGYAL-VPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
++ V G GQ+G A + ++ + + TD+ ++ +L+ + L G M+L + L
Sbjct: 23 KITVVGV-GQVGMACAISILGKSL---TDELALVDVLE-----DKLKGEMMDLQHGSLFL 73
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
+ I V+ G ++EG R +++ +NV+++K + ++ +PNC
Sbjct: 74 QTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPNC 132
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIW 185
++VV+NP + + + + + I LD R + EKL V S I+
Sbjct: 133 IIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWIL- 191
Query: 186 GNHSSS 191
G H S
Sbjct: 192 GEHGDS 197
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143
+ ++ G G R D++ +NV+I KA + Q++ P+CK++VV NP + ++ +
Sbjct: 90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNPVDILTYVVWK 148
Query: 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194
+ + I LD R I EKL V + ++ G H S P
Sbjct: 149 ISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVL-GEHGDSSVP 198
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 9/221 (4%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD-SGFNGIFLVAANPVDILTYATW 136
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
+ + + + T LD R I+E +NV V + I G H +++P +HA +
Sbjct: 137 KLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANIG 195
Query: 203 --TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVL 260
T A +K+D + + V+ IIK + I +L
Sbjct: 196 GVTIAEWVKAHPEIKEDKLV--KMFEDVRDAAYEIIKLKGATFYGIATALA--RISKAIL 251
Query: 261 GTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQ 301
E + + VY DG Y + I + V RNG I++
Sbjct: 252 -NDENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILE 291
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + + V+ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + ++ +PNCK+LVV+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNIVKY-SPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
E+L V I+ G H S P
Sbjct: 175 GERLGVHPLSCHGWIL-GEHGDSSVP 199
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 10/239 (4%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
E C +I + G +K G R +++ KN+ I+K S + + + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEV-MASGFDGIFLVATNPVDI 127
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196
+F+ + I T LD R +SE +V II G H ++ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII-GEHGDTELPVW 186
Query: 197 NHATVNTAAGEKPVRELV-KDDAWLNGEFITTVQQ-RGAAIIKARKXXXXXXXXXXXCDH 254
+HA V G PV ELV K+DA+ E V + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 255 IRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKL 313
I +L E + +++ Y DG Y I P G + L+++E +++
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD-SGFNGIFLVAANPVDILTYATW 136
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
+ + + + T LD R I++ +NV V + I G H +++P +HA +
Sbjct: 137 KLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSV-HAYIMGEHGDTEFPVWSHANIG 195
Query: 203 --TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVL 260
T A +K+D + + V+ + IIK + I +L
Sbjct: 196 GVTIAEWVKAHPEIKEDKLV--KMFEDVRNKAYEIIKLKGATFYGIATALA--RISKAIL 251
Query: 261 GTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQ 301
E + + VY DG Y + I + V RNG I++
Sbjct: 252 -NDENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILE 291
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEQHAAPNCKVLVVANPANTNAL 139
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHA 199
+ E + + I LD R I+ + V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 200 TVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
++ PV E + D + + ++ G I+ K
Sbjct: 187 CISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLK 221
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + ++ +P+CK+LVV+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKY-SPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
E+L V I+ G H S P
Sbjct: 174 GERLGVHALSCHGWIL-GEHGDSSVP 198
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + ++ +PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKY-SPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
E+L V ++ G H S P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + ++ +PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKY-SPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
E+L V ++ G H S P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 22 KITVVGV-GQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ I V+ G ++EG R +++ +NV+++K + ++ +P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
++VV+NP + + + + + I LD R ++EKL + S I+ G
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL-G 191
Query: 187 NHSSS 191
H S
Sbjct: 192 EHGDS 196
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 22 KITVVGV-GQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ I V+ G ++EG R +++ +NV+++K + ++ +P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
++VV+NP + + + + + I LD R ++EKL + S I+ G
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL-G 191
Query: 187 NHSSS 191
H S
Sbjct: 192 EHGDS 196
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V +++ + G ++ ++ GF + G R D++ N I + ++ PN
Sbjct: 60 VTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNLCPN 118
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L E + +P I L LD +R IS+KLNV DV N +
Sbjct: 119 AFIIVVTNPVDVMVQLLFEHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAL 176
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + D + G F TV
Sbjct: 177 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDEEVEGIFDRTVN 222
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + ++ + ++ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 115
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + ++ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
E+L V ++ G H S P
Sbjct: 175 GERLGVHPLSCHGWVL-GEHGDSSVP 199
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + ++ + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQI 168
I+K + ++ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYP 194
E+L V ++ G H S P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138
C ++ V+ G +K G R D++SKN+ I+K+ + + + LV NP + A
Sbjct: 72 CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEV-MASKFDGIFLVATNPVDILA 130
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
+F+ + I T LD R +SE +V V II G H ++ P +H
Sbjct: 131 YATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWSH 189
Query: 199 ATVNTAAGEKPVRELVK 215
A + AG+ P++ L++
Sbjct: 190 ANI---AGQ-PLKTLLE 202
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138
C ++ V+ G +K G R D++SKN+ I+K+ + + + LV NP + A
Sbjct: 72 CHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEV-MASKFDGIFLVATNPVDILA 130
Query: 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNH 198
+F+ + I T LD R +SE +V V II G H ++ P +H
Sbjct: 131 YATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWSH 189
Query: 199 ATVNTAAGEKPVRELVK 215
A + AG+ P++ L++
Sbjct: 190 ANI---AGQ-PLKTLLE 202
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V+ ++ + G ++ ++ GF + G R D++ N I ++++ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS+KLNV DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + DA L F TV
Sbjct: 177 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVN 222
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V+ ++ + G ++ ++ GF + G R D++ N I ++++ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS+KLNV DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + DA L F TV
Sbjct: 177 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVN 222
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V+ ++ + G ++ ++ GF + G R D++ N I ++++ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS+KLNV DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + DA L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V+ ++ + G ++ ++ GF + G R D++ N I ++++ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS+KLNV DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + DA L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V+ ++ + G ++ ++ GF + G R D++ N I ++++ PN
Sbjct: 61 VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS+KLNV DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + DA L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V+ ++ + G ++ ++ GF + G R D++ N I ++++ PN
Sbjct: 61 VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS+KLNV DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + DA L F TV
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVN 223
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140
G V+ G ++ G R ++ +N ++ AQ AAP +LV NP + +
Sbjct: 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVXTQV 125
Query: 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ 192
+ P + + T LD R ++E L V V ++ G H S+
Sbjct: 126 AYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142
+ ++ G +K G R D++ KN I++ + + AAP+ +LV +NP + +
Sbjct: 69 QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITR-AAPDAVLLVTSNPVDLLTDLAT 127
Query: 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ 192
+ AP P I T LD R +++ V + ++ G H S+
Sbjct: 128 QLAPGQPV--IGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSE 174
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140
G V+ G ++ G R ++ +N ++ AQ AAP +LV NP + +
Sbjct: 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQV 125
Query: 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ 192
+ P + + T LD R ++E L V V ++ G H S+
Sbjct: 126 AYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140
G V+ G ++ G R ++ +N ++ AQ AAP +LV NP + +
Sbjct: 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQV 125
Query: 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ 192
+ P + + T LD R ++E L V V ++ G H S+
Sbjct: 126 AYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140
G V+ G ++ G R ++ +N ++ AQ AAP +LV NP + +
Sbjct: 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQV 125
Query: 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ 192
+ P + + T LD R ++E L V V ++ G H S+
Sbjct: 126 AYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 17/170 (10%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPN 124
V+ ++ + ++ ++ GF + G R D++ N I ++ + PN
Sbjct: 61 VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNC-PN 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRALGQISEKLNVQVSDVKNVI 183
++VV NP + +L + + +P I L LD +R IS+KLNV DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQ 229
I G H + + TV G P++E + + D L+ F T+
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDQELDAIFDRTIN 223
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV-PMIARGVMLG------TDQPVILHMLDIPPAAEALNG 53
M + V VTGA+G IG LV ++ RG + T+ + H+LD+P A L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 54 VKMELVDAAFPLLKGVVATTDAVEACTGV 82
K +L D + +A++ CTGV
Sbjct: 61 WKADLADEG--------SFDEAIKGCTGV 81
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 49 EALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS 108
+ L G M+L + L + + G + V+ G ++EG R +++ +NV+
Sbjct: 57 DKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVN 116
Query: 109 IYKAQASALEQHAAPNC 125
I+K + +H +P+C
Sbjct: 117 IFKFIIPNIVKH-SPDC 132
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 1 MAKEPVRVLVTGAAG-QIGYALVPMIARGVMLGTDQPVILHMLD 43
+A EP + LV G +G IG L ARGV++ QP +LH D
Sbjct: 174 LAMEPSQTLVCGDSGNDIG--LFETSARGVIVRNAQPELLHWYD 215
>pdb|3JVD|A Chain A, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
pdb|3JVD|B Chain B, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
Length = 333
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 68 GVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK- 126
G T++V +G+NIA +VG ER +S SIY A+ + H +
Sbjct: 161 GFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGE 220
Query: 127 --VLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
VV N +ALI+ +P + A + TRL+
Sbjct: 221 EMAQVVFNNGLPDALIVA--SPRLMAGVMRAFTRLN 254
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From
Hyperthermophilic Archaeon Thermoplasma Volcanium
Length = 317
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 8 VLVTGAAGQIGYALVPMIA 26
+LVTG++GQIG LVP +A
Sbjct: 2 ILVTGSSGQIGTELVPYLA 20
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 8 VLVTGAAGQIGYALVPMIA 26
+LVTG++GQIG LVP +A
Sbjct: 2 ILVTGSSGQIGTELVPYLA 20
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
+ +R+LVTG +G +G A+ ++A G L + V + D +L D A
Sbjct: 5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD------------ADLTDTA- 51
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPR--KEGME--RKDV-MSKNV 107
A + V+ +++A MVGG R K ++ RK+V M+ NV
Sbjct: 52 ----QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNV 96
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
+ +R+LVTG +G +G A+ ++A G L + V + D +L D A
Sbjct: 6 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD------------ADLTDTA- 52
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPR--KEGME--RKDV-MSKNV 107
A + V+ +++A MVGG R K ++ RK+V M+ NV
Sbjct: 53 ----QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNV 97
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 255 IRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNG 295
+ W L + E W+S DGS V G+ FPV +N
Sbjct: 31 VYSWKLKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNS 71
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 255 IRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNG 295
+ W L + E W+S DGS V G+ FPV +N
Sbjct: 31 VYSWKLKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNS 71
>pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|B Chain B, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|C Chain C, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|D Chain D, M. Smegmatis Arylamine N-Acetyl Transferase
Length = 284
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 219
+HN LG + E+L +V + ++W + P H ++ A R LV D
Sbjct: 81 EHNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGADGRYLV--DVG 138
Query: 220 LNGEFITT 227
G+ +T+
Sbjct: 139 FGGQTLTS 146
>pdb|1SEP|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Sepiapterin
Length = 261
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKG 68
++TGA+ G AL P +AR + G+ ML + L +K EL A P LK
Sbjct: 12 VLTGASRGFGRALAPQLARLLSPGS------VMLVSARSESMLRQLKEEL-GAQQPDLKV 64
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMER 99
V+A D + V PR EG++R
Sbjct: 65 VLAAADLGTEAGVQRLLSAVRELPRPEGLQR 95
>pdb|1NAS|A Chain A, Sepiapterin Reductase Complexed With N-acetyl Serotonin
pdb|1OAA|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Oxaloacetate
Length = 259
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKG 68
++TGA+ G AL P +AR + G+ ML + L +K EL A P LK
Sbjct: 10 VLTGASRGFGRALAPQLARLLSPGS------VMLVSARSESMLRQLKEEL-GAQQPDLKV 62
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMER 99
V+A D + V PR EG++R
Sbjct: 63 VLAAADLGTEAGVQRLLSAVRELPRPEGLQR 93
>pdb|1W6F|A Chain A, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|B Chain B, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|C Chain C, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|D Chain D, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site
Length = 278
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 219
+HN LG + E+L +V + ++W + P H ++ A R LV D
Sbjct: 75 EHNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGADGRYLV--DVG 132
Query: 220 LNGEFITT 227
G+ +T+
Sbjct: 133 FGGQTLTS 140
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 81 GVNIAVMV--GGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138
G N+ ++ GGFP +D K I +ALE+H P+ K+ +VA P
Sbjct: 226 GFNMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYV 280
Query: 139 LILKEFAPSIPAKNIT 154
A ++ AK +T
Sbjct: 281 ASAFTLAVNVIAKKVT 296
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 81 GVNIAVMV--GGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138
G N+ ++ GGFP +D K I +ALE+H P+ K+ +VA P
Sbjct: 226 GFNMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYV 280
Query: 139 LILKEFAPSIPAKNIT 154
A ++ AK +T
Sbjct: 281 ASAFTLAVNVIAKKVT 296
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 81 GVNIAVMV--GGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138
G N+ ++ GGFP +D K I +ALE+H P+ K+ +VA P
Sbjct: 226 GFNMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYV 280
Query: 139 LILKEFAPSIPAKNIT 154
A ++ AK +T
Sbjct: 281 ASAFTLAVNVIAKKVT 296
>pdb|1W5R|A Chain A, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
pdb|1W5R|B Chain B, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
Length = 278
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW 219
+HN LG + E+L +V + ++W + P H ++ A R LV D
Sbjct: 75 EHNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGADGRYLV--DVG 132
Query: 220 LNGEFITT 227
G+ +T+
Sbjct: 133 FGGQTLTS 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,335,694
Number of Sequences: 62578
Number of extensions: 363547
Number of successful extensions: 1100
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 100
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)