Query 020023
Match_columns 332
No_of_seqs 125 out of 209
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1.9E-86 4.2E-91 637.2 18.9 309 1-329 2-313 (408)
2 PF03547 Mem_trans: Membrane t 100.0 1.7E-39 3.7E-44 317.5 21.6 292 9-325 1-301 (385)
3 COG0679 Predicted permeases [G 99.9 1.7E-22 3.6E-27 194.9 15.9 220 7-325 2-222 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.8 8.7E-19 1.9E-23 168.9 15.6 224 7-320 3-230 (321)
5 PRK09903 putative transporter 99.8 1.3E-17 2.8E-22 160.7 16.7 216 11-322 6-223 (314)
6 TIGR00841 bass bile acid trans 95.1 0.36 7.8E-06 46.3 12.3 133 14-164 140-276 (286)
7 COG0385 Predicted Na+-dependen 88.4 2.5 5.4E-05 41.6 8.7 44 74-117 224-267 (319)
8 TIGR00832 acr3 arsenical-resis 81.4 3.1 6.6E-05 40.9 5.7 53 72-127 245-297 (328)
9 PRK05274 2-keto-3-deoxyglucona 64.4 13 0.00028 36.8 5.3 100 15-122 174-274 (326)
10 TIGR00783 ccs citrate carrier 62.0 18 0.00039 36.2 5.9 85 18-105 208-298 (347)
11 PF05684 DUF819: Protein of un 61.3 21 0.00045 35.9 6.3 86 17-105 28-117 (378)
12 PRK12460 2-keto-3-deoxyglucona 58.0 36 0.00079 33.5 7.1 103 14-125 166-269 (312)
13 PF13593 DUF4137: SBF-like CPA 55.0 1.7E+02 0.0036 28.5 11.3 76 49-127 197-277 (313)
14 PRK11677 hypothetical protein; 50.6 17 0.00037 31.5 3.2 25 73-100 3-27 (134)
15 PF05684 DUF819: Protein of un 47.0 1.1E+02 0.0023 30.9 8.7 133 14-165 240-373 (378)
16 PF09512 ThiW: Thiamine-precur 45.4 25 0.00053 31.1 3.4 72 22-98 73-148 (150)
17 PF12534 DUF3733: Leucine-rich 45.2 30 0.00065 26.4 3.4 44 61-104 12-60 (65)
18 PF09964 DUF2198: Uncharacteri 44.6 39 0.00085 26.4 4.0 18 82-99 52-69 (74)
19 KOG2718 Na+-bile acid cotransp 44.4 86 0.0019 31.7 7.5 115 42-166 106-227 (371)
20 COG2855 Predicted membrane pro 40.5 45 0.00097 33.2 4.7 102 60-172 79-182 (334)
21 PF06295 DUF1043: Protein of u 38.2 29 0.00062 29.5 2.7 22 79-100 2-23 (128)
22 PRK11339 abgT putative aminobe 38.2 58 0.0013 34.2 5.4 143 13-173 89-241 (508)
23 PRK05326 potassium/proton anti 37.8 1.9E+02 0.0042 30.2 9.3 98 22-125 252-351 (562)
24 PF06305 DUF1049: Protein of u 37.0 46 0.001 24.4 3.3 25 73-97 18-42 (68)
25 PF03812 KdgT: 2-keto-3-deoxyg 36.9 1.3E+02 0.0029 29.7 7.3 107 12-126 169-276 (314)
26 COG0475 KefB Kef-type K+ trans 36.0 96 0.0021 31.2 6.5 64 37-101 264-328 (397)
27 PF03601 Cons_hypoth698: Conse 33.2 47 0.001 32.5 3.6 101 60-172 69-173 (305)
28 PRK01844 hypothetical protein; 32.6 68 0.0015 25.0 3.6 25 72-96 3-27 (72)
29 KOG2262 Sexual differentiation 32.2 13 0.00028 40.2 -0.5 104 58-173 432-537 (761)
30 TIGR03802 Asp_Ala_antiprt aspa 31.9 3E+02 0.0064 29.2 9.5 163 3-181 3-197 (562)
31 COG0385 Predicted Na+-dependen 31.6 1E+02 0.0022 30.6 5.6 69 50-118 41-114 (319)
32 COG3763 Uncharacterized protei 29.7 83 0.0018 24.4 3.6 26 71-96 2-27 (71)
33 PRK03562 glutathione-regulated 29.3 1.3E+02 0.0028 32.2 6.4 104 49-160 271-376 (621)
34 TIGR02185 Trep_Strep conserved 29.1 57 0.0012 29.5 3.2 36 67-104 153-188 (189)
35 TIGR03082 Gneg_AbrB_dup membra 25.8 2E+02 0.0043 25.0 5.9 48 55-102 55-106 (156)
36 PF09605 Trep_Strep: Hypotheti 25.7 73 0.0016 28.7 3.3 44 60-105 137-186 (186)
37 PF10951 DUF2776: Protein of u 25.4 2.8E+02 0.0061 27.4 7.2 145 15-174 16-182 (347)
38 COG4129 Predicted membrane pro 23.6 2.2E+02 0.0047 28.3 6.3 90 8-102 51-152 (332)
39 PF13858 DUF4199: Protein of u 22.7 4.2E+02 0.0092 22.4 7.4 94 2-98 62-161 (163)
40 TIGR00793 kdgT 2-keto-3-deoxyg 22.4 1.7E+02 0.0037 28.9 5.3 53 83-156 82-134 (314)
41 COG5505 Predicted integral mem 22.4 6.8E+02 0.015 25.1 9.3 144 18-171 35-184 (384)
42 TIGR00366 conserved hypothetic 22.1 4E+02 0.0087 27.6 8.1 103 2-123 50-159 (438)
43 PLN03159 cation/H(+) antiporte 21.2 1.5E+02 0.0033 33.0 5.2 91 39-133 315-408 (832)
44 PF05145 AmoA: Putative ammoni 21.1 2.3E+02 0.0051 27.6 6.0 49 54-102 32-84 (318)
45 TIGR00698 conserved hypothetic 21.1 1.4E+02 0.003 29.7 4.5 93 60-169 75-176 (335)
46 PRK10669 putative cation:proto 20.7 2.3E+02 0.0051 29.5 6.3 53 49-102 279-332 (558)
47 COG1301 GltP Na+/H+-dicarboxyl 20.7 4.4E+02 0.0096 27.0 8.1 88 14-102 9-105 (415)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.9e-86 Score=637.24 Aligned_cols=309 Identities=48% Similarity=0.867 Sum_probs=247.8
Q ss_pred CchhHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH
Q 020023 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (332)
Q Consensus 1 m~~~~l~~~a~--~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~ 78 (332)
|||++++..|. +||+||++||++||++|+||.|+|++|+||.+|++||++|+|||||+|||+++|++||.+|||||||
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhh
Q 020023 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (332)
Q Consensus 79 ~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~i 158 (332)
++++|++|.++||+++|++|+|+++|||++|||+|||+||||+++++|+|+++++||||+|+|.+||++|++++||+|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcchhhHH-hhhccCCCCccCcccccccchhhhhhcccCCCCCcccchhhhccCCCCCCCccccccCccc
Q 020023 159 FIWSYSYQLIKQSSVRYK-ALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQAS 237 (332)
Q Consensus 159 l~WS~gy~llr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
+||||+||++.++..++. ..+++ +++... +.. .++..+++.|+++++..+ ++.++++++...
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~~-------~~~-~~~s~e~~~~~~~k~~ll----~~~en~~~~~~g---- 224 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKES-PVEALL-------ESV-PQPSVESDEDSTCKTLLL----ASKENRNNQVVG---- 224 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChh-hhhhhh-------hcc-CCCCcccccccccccccc----cccccCCCceee----
Confidence 999999997777743221 11111 111000 000 000001111111221111 111111111100
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhchhhhhHhhccCCCCchhHHHHHHHhcCchhHHHHHhhhcc
Q 020023 238 HLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGN 317 (332)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~PP~~Aailg~iVg~ippLr~~lfg~~apL~~i~~ai~~lG~asIP~illVLGan 317 (332)
.++.. .++......+..++++++|||||+++|+++|+|||||+++||+|||+|+||||++++|+++|||||+|||||
T Consensus 225 ~~~~~---~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgn 301 (408)
T KOG2722|consen 225 REGKV---KRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGN 301 (408)
T ss_pred ccccc---eEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccc
Confidence 00000 000011112234899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcCCcCC
Q 020023 318 LIQGENTTLSNF 329 (332)
Q Consensus 318 L~~G~~~s~~~~ 329 (332)
|++|+++|..-.
T Consensus 302 L~~g~~ss~~~~ 313 (408)
T KOG2722|consen 302 LIQGLRSSALKT 313 (408)
T ss_pred cccCchhcccCc
Confidence 999999876543
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.7e-39 Score=317.47 Aligned_cols=292 Identities=26% Similarity=0.473 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 020023 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88 (332)
Q Consensus 9 ~a~~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~ig~~ 88 (332)
+++++++++++++++||+++ |.|+++++.+|.+|++++++|+|||+|++++++.+.+++.++|++++..++.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhhhhhh
Q 020023 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168 (332)
Q Consensus 89 lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~gy~ll 168 (332)
++|++.|++|.|+++|+.++.+|+|+|.+++|+.++.+++.+ +|++|++++.+++.++.|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999443 8899999999999999999999999
Q ss_pred hcchhhHHhhhccCCCC-c-cCcccccccchhhhh-hc-ccCCCCCcccchhhhccCCCCCCCccccccCcccccchhh-
Q 020023 169 KQSSVRYKALAQAAEPE-E-VPKEVNKDFDANAQT-QL-LRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRK- 243 (332)
Q Consensus 169 r~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (332)
+..+++.+..++.++.. . ..+.++.++...++. +. .++..+++++ .... +.+..++..... + ..+.++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~-~~~~~~~~~ 220 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGS-PSST-PSQSSASAPSSV--S-TSPSPSNST 220 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCcccccccccccccCCc-cccc-ccccccccchhh--c-cCCcccccc
Confidence 87754432211110000 0 000000000000000 00 0000000000 0000 000000000000 0 00001111
Q ss_pred ---hhhHHHHHHH-HHHHHHHhhChhHHHHHHHHHHhchhhhhHhhccCCCCchhHHHHHHHhcCchhHHHHHhhhcccc
Q 020023 244 ---ESFWKRSLEF-LHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLI 319 (332)
Q Consensus 244 ---~~~~~~~~~~-~~~~l~~~~~PP~~Aailg~iVg~ippLr~~lfg~~apL~~i~~ai~~lG~asIP~illVLGanL~ 319 (332)
.+.+++.++. .+..++.++|||+||+++|++++++|++|++++. .+++++++++|++++|+.|++||++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~ 295 (385)
T PF03547_consen 221 GAEQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLA 295 (385)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1111111111 1233689999999999999999999999999886 789999999999999999999999999
Q ss_pred CCCCcC
Q 020023 320 QGENTT 325 (332)
Q Consensus 320 ~G~~~s 325 (332)
.+++.+
T Consensus 296 ~~~~~~ 301 (385)
T PF03547_consen 296 RGPRKS 301 (385)
T ss_pred cCCccc
Confidence 987653
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=194.88 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 020023 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (332)
Q Consensus 7 ~~~a~~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~ig 86 (332)
+...+.++++++++.++||+++ |.|+++++..|.+|++++++++|||+|++++++-.-++ .++..+++.++.+...+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4567899999999999999999 99999999999999999999999999999999986555 88888888888888888
Q ss_pred HHHHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhhhh
Q 020023 87 GILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (332)
Q Consensus 87 ~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~gy~ 166 (332)
.+..++..|.++.+++++.....+++|+|++++++.+..++ ||+ +|++|.+++++++++++|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999988888 775 79999999999999999999999
Q ss_pred hhhcchhhHHhhhccCCCCccCcccccccchhhhhhcccCCCCCcccchhhhccCCCCCCCccccccCcccccchhhhhh
Q 020023 167 LIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESF 246 (332)
Q Consensus 167 llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (332)
++...+.+.+ + +.
T Consensus 146 ~l~~~~~~~~----------------------------------------------------------------~---~~ 158 (311)
T COG0679 146 LLARSGGGTN----------------------------------------------------------------K---SL 158 (311)
T ss_pred HHHHhcCCch----------------------------------------------------------------h---HH
Confidence 7775521000 0 01
Q ss_pred HHHHHHHHHHHHHHhhChhHHHHHHHHHHhchhhhhHhhccCCCCchhHHHHHHHhcCchhHHHHHhhhccccC-CCCcC
Q 020023 247 WKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQ-GENTT 325 (332)
Q Consensus 247 ~~~~~~~~~~~l~~~~~PP~~Aailg~iVg~ippLr~~lfg~~apL~~i~~ai~~lG~asIP~illVLGanL~~-G~~~s 325 (332)
++ ...+-+-|||+||.++|++..... + ..=.++.++++++|++++||.++++|..|.. .++++
T Consensus 159 ~~-------~~~~~~~nP~i~a~i~g~~~~~~~------i---~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~ 222 (311)
T COG0679 159 LS-------VLKKLLTNPLIIALILGLLLNLLG------I---SLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGS 222 (311)
T ss_pred HH-------HHHHHHhCcHHHHHHHHHHHHHcC------C---CCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccc
Confidence 10 112456899999999999998655 1 1112799999999999999999999999997 44443
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.80 E-value=8.7e-19 Score=168.90 Aligned_cols=224 Identities=19% Similarity=0.206 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHH
Q 020023 7 FEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLI 85 (332)
Q Consensus 7 ~~~a~~~vlkV~li~~~G~~l-A~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~i 85 (332)
++..+..++.++++.++||++ . |.++++++..|.+|++++++.+||++|+++++.-.-+.....|...+.....+.+
T Consensus 3 ~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T TIGR00946 3 TYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSG 80 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999 7 8999999999999999999999999999999853322344444444556667778
Q ss_pred HHHHHHHhHh-hcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhh
Q 020023 86 GGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (332)
Q Consensus 86 g~~lg~~~~~-i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~g 164 (332)
.++++|++.| .+|.+++.++....+++++|.+.+-+-++.++ ||++.. ..+.|...+.....++.|+.|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~~~~---~~~~~~~~~~~~~~~~~~~~~ 150 (321)
T TIGR00946 81 SYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGEEGA---KILIAALFIDTGAVLMTIALG 150 (321)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcccch---hhhHHHHHHHhccchhHHHHH
Confidence 8999999999 88999999999999999999999999999999 665311 125677777766678899999
Q ss_pred hhhhhcchhhHHhhhccCCCCccCcccccccchhhhhhcccCCCCCcccchhhhccCCCCCCCccccccCcccccchhhh
Q 020023 165 YQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKE 244 (332)
Q Consensus 165 y~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (332)
+.+.+...++ . + ++ . +
T Consensus 151 ~~~~~~~~~~------~---~--------------------------~~------------------------~-----~ 166 (321)
T TIGR00946 151 LFLVSEDGAG------G---E--------------------------GS------------------------G-----E 166 (321)
T ss_pred HHHhcccccc------c---c--------------------------cc------------------------c-----h
Confidence 8544311000 0 0 00 0 0
Q ss_pred hhHHHHHHHHHHHH-HHhhChhHHHHHHHHHHhchhhhhHhhccCCCCc-hhHHHHHHHhcCchhHHHHHhhhccccC
Q 020023 245 SFWKRSLEFLHQLL-EELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQ 320 (332)
Q Consensus 245 ~~~~~~~~~~~~~l-~~~~~PP~~Aailg~iVg~ippLr~~lfg~~apL-~~i~~ai~~lG~asIP~illVLGanL~~ 320 (332)
+.+++.+ +.+ +-+-||++||.++|+++..... ++ .++.++++++|++++|+.|+++|..|..
T Consensus 167 ~~~~~~~----~~~~~~~~nP~iia~i~Gl~~~~~~i----------~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~ 230 (321)
T TIGR00946 167 STRLMLI----FVWKKLIKFPPLWAPLLSVILSLVGF----------KMPGLILKSISILSGATTPMALFSLGLALSP 230 (321)
T ss_pred hHHHHHH----HHHHHHHhCCChHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 1111111 123 3447999999999999998752 23 4799999999999999999999998873
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.76 E-value=1.3e-17 Score=160.73 Aligned_cols=216 Identities=16% Similarity=0.236 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020023 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILG 90 (332)
Q Consensus 11 ~~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~ig~~lg 90 (332)
...++-++++.++||++. |+++++++..|.+|++++++.+||++|+++++. ..+++.+-|.+.+..++.+++.++++
T Consensus 6 ~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 6 IGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345677789999999999 999999999999999999999999999999975 66777644556677888888888899
Q ss_pred HHhHh-hcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhhhhhhh
Q 020023 91 WIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (332)
Q Consensus 91 ~~~~~-i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~gy~llr 169 (332)
|++.| ..|.+++.++.....++++|.+.+-+-++.++ ||++.. -|+.|..++. +..++.|++|..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~~-~~~~~~~~~g~~~~~ 151 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIISI-IVNAITIPIGLYLLN 151 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHHH-HHHHHHHHHHHHHHc
Confidence 98875 56777777778888889999999999999999 776421 1555555543 578899999987765
Q ss_pred cchhhHHhhhccCCCCccCcccccccchhhhhhcccCCCCCcccchhhhccCCCCCCCccccccCcccccchhhhhhHHH
Q 020023 170 QSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKR 249 (332)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (332)
..+. . + ++ . + ..++.
T Consensus 152 ~~~~--~----~------------------------------~~------------------------~--~---~~~~~ 166 (314)
T PRK09903 152 PSSG--A----D------------------------------GK------------------------K--N---SNLSA 166 (314)
T ss_pred cccc--c----c------------------------------cc------------------------c--c---hHHHH
Confidence 3310 0 0 00 0 0 01111
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHhchhhhhHhhccCCCCc-hhHHHHHHHhcCchhHHHHHhhhccccCCC
Q 020023 250 SLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGE 322 (332)
Q Consensus 250 ~~~~~~~~l~~~~~PP~~Aailg~iVg~ippLr~~lfg~~apL-~~i~~ai~~lG~asIP~illVLGanL~~G~ 322 (332)
+ .+-+-||+++|.++|+++-.. + =++ .++.++++++|++++|+.|+.+|+.|++-.
T Consensus 167 ----l---~~~~~nP~iia~~~gl~~~l~--------~--i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~ 223 (314)
T PRK09903 167 ----L---ISAAKEPVVWAPVLATILVLV--------G--VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHK 223 (314)
T ss_pred ----H---HHHHhchHHHHHHHHHHHHHc--------C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 233578999999999997542 1 123 489999999999999999999999998643
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.12 E-value=0.36 Score=46.33 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCChhHHhh---ccchhhhhhhhHHHHHhhhcccchhhH-HHHHHHHHHHHHHHHHHHHH
Q 020023 14 IVQVLLISVLGALMATQYWNLLTADARRS---LNKMVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLIGGIL 89 (332)
Q Consensus 14 vlkV~li~~~G~~lA~~~~gil~~~~~k~---ls~lv~~~F~P~LiFs~la~~lt~~~l-~~lw~iPv~~~l~~~ig~~l 89 (332)
..-+++=..+|..+.+. . + +.+|. ++++... ++=++++.-++.+. +.+ .+.|-+-+..++...+|+++
T Consensus 140 ~~~v~vPl~lG~~~r~~-~---p-~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~~~~~ 211 (286)
T TIGR00841 140 LVAVLIPVSIGMLVKHK-L---P-QIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLAGFLL 211 (286)
T ss_pred HHHHHHHHHHHHHHHHH-h---H-HHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45555566778877632 1 2 22222 3333322 22244444444332 222 23444555567778999999
Q ss_pred HHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhh
Q 020023 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (332)
Q Consensus 90 g~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~g 164 (332)
||+++|.+|.+++.|+.+.-.++..|++ +-+++..+. |++ + ...-...|..++...++++.+-|.
T Consensus 212 g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~~~~~~~~~a~~~~ 276 (286)
T TIGR00841 212 GYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLIYALFQLAFALLFL 276 (286)
T ss_pred HHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998889999987 444444443 432 1 233355677777777777665433
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=88.42 E-value=2.5 Score=41.62 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcc
Q 020023 74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLG 117 (332)
Q Consensus 74 ~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~ 117 (332)
.+-+..++...+|+.+||..+|.++.++..|..+..|++-.|++
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 56677888999999999999999999999999999999999986
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=81.39 E-value=3.1 Score=40.90 Aligned_cols=53 Identities=25% Similarity=0.190 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhh
Q 020023 72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (332)
Q Consensus 72 lw~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~sl 127 (332)
++.+-+.+++.+.+++.+||.++|.+|.++++|.-+..+++..|+ .+++.-|.
T Consensus 245 i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 245 IALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 344444567889999999999999999999999999888887775 45555555
No 9
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=64.44 E-value=13 Score=36.80 Aligned_cols=100 Identities=23% Similarity=0.258 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 020023 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIV 93 (332)
Q Consensus 15 lkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw-~iPv~~~l~~~ig~~lg~~~ 93 (332)
+.+++.-++|..+. + ++++.|+.+++=+- +.+|+.+|. ++.+++++++.+-. --++-.++..++...+++.+
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~Gi~-~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKAVP-VLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCCcE-EEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 45558888898887 3 78887877777643 399999998 99999999998884 44444444444455557777
Q ss_pred HhhcCCCCCCCCeeeEEeecCCcchhHHH
Q 020023 94 VKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (332)
Q Consensus 94 ~~i~~~p~~~~~~~ia~~~fgN~~~LPl~ 122 (332)
.|+++-.+...+..+. .+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~a~~-ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGAAAG-STAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchHHHH-HHHHHHHHHHHH
Confidence 7888655554444444 566777666655
No 10
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=62.02 E-value=18 Score=36.15 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhccCCCCChhHHhhccchh---hhhhhhHHHHHhhh-cccchhhHHHHHHHHHH-HHHHHHHH-HHHHH
Q 020023 18 LLISVLGALMATQYWNLLTADARRSLNKMV---FTVFTPSLMFASLA-KTVTLEEIISWWFMPVN-VAMTFLIG-GILGW 91 (332)
Q Consensus 18 ~li~~~G~~lA~~~~gil~~~~~k~ls~lv---~~~F~P~LiFs~la-~~lt~~~l~~lw~iPv~-~~l~~~ig-~~lg~ 91 (332)
+....+|.++. ..|+++++.+..-++.. ...+++.+++. ++ ..++++++.+.-=.|.. .++...+| .+.++
T Consensus 208 v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~ 284 (347)
T TIGR00783 208 AFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGA 284 (347)
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHH
Confidence 44556677676 79999998877655554 34466666552 33 34788998886522332 22333333 45567
Q ss_pred HhHhhcCCCCCCCC
Q 020023 92 IVVKLLRPKPHLEG 105 (332)
Q Consensus 92 ~~~~i~~~p~~~~~ 105 (332)
+++|+++.=|-+..
T Consensus 285 lvGKllG~YPiE~a 298 (347)
T TIGR00783 285 FLGKLMGMYPVESA 298 (347)
T ss_pred HHHHHhCCChHHHH
Confidence 88899877554443
No 11
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=61.32 E-value=21 Score=35.93 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHH----HHHHHHHHHHHHHHHHHHH
Q 020023 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW----FMPVNVAMTFLIGGILGWI 92 (332)
Q Consensus 17 V~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw----~iPv~~~l~~~ig~~lg~~ 92 (332)
+++..+.|.+++ ..|++|......+.+.+..+++|.-++-=|= +..++++.+.- .+-+...+.+++|.++++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl-~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLL-SADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHH-HccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888 8999965566678888888888887776543 34555554443 3333356677788888877
Q ss_pred hHhhcCCCCCCCC
Q 020023 93 VVKLLRPKPHLEG 105 (332)
Q Consensus 93 ~~~i~~~p~~~~~ 105 (332)
+.+..--|..|+.
T Consensus 105 l~~~~l~~~~wk~ 117 (378)
T PF05684_consen 105 LFGGFLGPEGWKI 117 (378)
T ss_pred HHhhcccchHHHH
Confidence 7666533444443
No 12
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=57.98 E-value=36 Score=33.53 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH-HHHHHHHHHHHHHH
Q 020023 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWI 92 (332)
Q Consensus 14 vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~-~~l~~~ig~~lg~~ 92 (332)
++-+++=.++|.++. | ++++.|+.+++-.-. ..|-.+ --++.+++++++.+.++--+- .+++..+..++++.
T Consensus 166 lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~f-~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 166 LVAALLPLVLGMILG----N-LDPDMRKFLTKGGPL-LIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHHHHh----c-cchhhHHHHhccceE-eHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 344666777888887 4 777888888776443 444433 358999999999999755444 34566677788888
Q ss_pred hHhhcCCCCCCCCeeeEEeecCCcchhHHHHHH
Q 020023 93 VVKLLRPKPHLEGLVIATCASGNLGNLLLIIVP 125 (332)
Q Consensus 93 ~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~ 125 (332)
+.|.+|.+++. + ....+..||.--=|-++..
T Consensus 239 i~rllg~~~~~-g-~li~stAGnAIcgpAAVaA 269 (312)
T PRK12460 239 ADRLVGGTGIA-G-AAASSTAGNAVATPLAIAA 269 (312)
T ss_pred HHHHhCCChhH-H-HHHHHHhhHHHHHHHHHHH
Confidence 88999766655 2 2222457887666655543
No 13
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=54.95 E-value=1.7e+02 Score=28.54 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=47.0
Q ss_pred hhhhhHHHHHhhhcccchh-----hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHH
Q 020023 49 TVFTPSLMFASLAKTVTLE-----EIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (332)
Q Consensus 49 ~~F~P~LiFs~la~~lt~~-----~l~~lw~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~l 123 (332)
...+-.++++....+..-+ +-.++..+-+..+....+.+.++|...|.++.++++|.-++.|++ -.|+|+++
T Consensus 197 ~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs---~Ksl~~gv 273 (313)
T PF13593_consen 197 QLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGS---QKSLALGV 273 (313)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcC---cCcchhHH
Confidence 4444566677666652211 113333333445556677788999999999999999877776555 44566666
Q ss_pred HHhh
Q 020023 124 VPAI 127 (332)
Q Consensus 124 v~sl 127 (332)
..+-
T Consensus 274 pl~~ 277 (313)
T PF13593_consen 274 PLAS 277 (313)
T ss_pred HHHH
Confidence 5443
No 14
>PRK11677 hypothetical protein; Provisional
Probab=50.62 E-value=17 Score=31.45 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCC
Q 020023 73 WFMPVNVAMTFLIGGILGWIVVKLLRPK 100 (332)
Q Consensus 73 w~iPv~~~l~~~ig~~lg~~~~~i~~~p 100 (332)
|++++ +.+++|.++|+++.|.+...
T Consensus 3 W~~a~---i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYAL---IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhccch
Confidence 65544 77889999999999986554
No 15
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=46.99 E-value=1.1e+02 Score=30.90 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhcc-CCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020023 14 IVQVLLISVLGALMATQY-WNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWI 92 (332)
Q Consensus 14 vlkV~li~~~G~~lA~~~-~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~ig~~lg~~ 92 (332)
..-+++++.+|...+.+| .+.+ ..-..+...-.+ +.|.-++..-++.++.+-..+-++.++...+-.++=++
T Consensus 240 ~~~il~~tt~~l~~~~~~~~~~l--~g~~~lg~~lly-----~ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATSFPPFRKLL--RGASELGTFLLY-----LFFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHhccchhhcC--CchHHHHHHHHH-----HHHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777666322 2222 233334433333 35788999999999999666777777778888888999
Q ss_pred hHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhhh
Q 020023 93 VVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY 165 (332)
Q Consensus 93 ~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~gy 165 (332)
++|++|.|.+ .++.++-.|+|--+-+-..|-++.++ =..-|+.--.+..++|..+=+..++
T Consensus 313 ~~kl~k~~l~----~~~vAS~AnIGGpaTA~a~A~a~~~~--------Lv~pgvL~gvlGyaiGty~G~~va~ 373 (378)
T PF05684_consen 313 LGKLFKIDLF----ELLVASNANIGGPATAPAVAAAKGPS--------LVPPGVLMGVLGYAIGTYLGLAVAQ 373 (378)
T ss_pred HHHHHCCCHH----HHHHHhhcccCCcchHHHHHHhcCCc--------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997763 33334667887777775555544422 2446777777888888877776665
No 16
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=45.43 E-value=25 Score=31.11 Aligned_cols=72 Identities=31% Similarity=0.523 Sum_probs=47.5
Q ss_pred HHHHHHHhccCCCCChhHHhh----ccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 020023 22 VLGALMATQYWNLLTADARRS----LNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLL 97 (332)
Q Consensus 22 ~~G~~lA~~~~gil~~~~~k~----ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~ig~~lg~~~~~i~ 97 (332)
..|++++ |++=+.+||. +....-+-..=+++-.-++.-+.-++-..+.++| -++.+++.|+++||++.+.+
T Consensus 73 m~GA~la----Gllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~~~~~~~~v~-~F~~St~~Ga~ig~~~l~~L 147 (150)
T PF09512_consen 73 MFGALLA----GLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGKEAALFFFVP-PFLISTLIGAIIGYILLKAL 147 (150)
T ss_pred hHHHHHH----HHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCCchhhhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3456666 5555555553 4444555555666666666666555555555555 47889999999999999887
Q ss_pred C
Q 020023 98 R 98 (332)
Q Consensus 98 ~ 98 (332)
|
T Consensus 148 ~ 148 (150)
T PF09512_consen 148 K 148 (150)
T ss_pred h
Confidence 6
No 17
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=45.17 E-value=30 Score=26.36 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.5
Q ss_pred hcccchhhHHHHH--HHHHHHHHHHHHHHHHHHHhH---hhcCCCCCCC
Q 020023 61 AKTVTLEEIISWW--FMPVNVAMTFLIGGILGWIVV---KLLRPKPHLE 104 (332)
Q Consensus 61 a~~lt~~~l~~lw--~iPv~~~l~~~ig~~lg~~~~---~i~~~p~~~~ 104 (332)
-.+.+.+.++-|| |+|=..+++++++.+.|-.-. ++.+.|.+..
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~~ 60 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTSS 60 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCccc
Confidence 3456789999999 888888888888888886644 5567776543
No 18
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=44.62 E-value=39 Score=26.40 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHhhcCC
Q 020023 82 TFLIGGILGWIVVKLLRP 99 (332)
Q Consensus 82 ~~~ig~~lg~~~~~i~~~ 99 (332)
.=++|...||+.++-.+.
T Consensus 52 iD~~Sl~aGf~~a~~m~~ 69 (74)
T PF09964_consen 52 IDAVSLTAGFLYAKKMLK 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566666666654433
No 19
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=44.43 E-value=86 Score=31.67 Aligned_cols=115 Identities=22% Similarity=0.235 Sum_probs=71.1
Q ss_pred hccchhhhhhhhHHHHHhhhc--ccchhhHHHHHHHHHH----HHHHHHHHHHHHHHhHhhcCCCCCC-CCeeeEEeecC
Q 020023 42 SLNKMVFTVFTPSLMFASLAK--TVTLEEIISWWFMPVN----VAMTFLIGGILGWIVVKLLRPKPHL-EGLVIATCASG 114 (332)
Q Consensus 42 ~ls~lv~~~F~P~LiFs~la~--~lt~~~l~~lw~iPv~----~~l~~~ig~~lg~~~~~i~~~p~~~-~~~~ia~~~fg 114 (332)
..+.++-.+|.|-+.+..++. .++.|+.+..|--|.- ++-.+.+.-++|+.+.+++..|+++ .+..+.+|.+|
T Consensus 106 ~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p 185 (371)
T KOG2718|consen 106 AFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSP 185 (371)
T ss_pred cceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccC
Confidence 344455556667766665554 5589999999855543 4445777888999999999999999 79888888776
Q ss_pred CcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhhhh
Q 020023 115 NLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (332)
Q Consensus 115 N~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~gy~ 166 (332)
=-+.- .+.++ +.+.|.-....+.-++---++...-.||+.|-
T Consensus 186 ~g~~~---~~~~~-------~~~g~v~lsilmT~~stv~avi~~pl~s~~l~ 227 (371)
T KOG2718|consen 186 GGGGN---YLTSK-------RLPGDVTLSILMTTISTVLAVILTPLLSILLG 227 (371)
T ss_pred Ccchh---hheee-------cCCcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44321 11111 11222233333444444444555666777664
No 20
>COG2855 Predicted membrane protein [Function unknown]
Probab=40.50 E-value=45 Score=33.21 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=65.9
Q ss_pred hhcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEE-eecCCcchhHHHHHHhhhccCCCCCCC
Q 020023 60 LAKTVTLEEIISWWFMPV-NVAMTFLIGGILGWIVVKLLRPKPHLEGLVIAT-CASGNLGNLLLIIVPAICHEQGSPFGN 137 (332)
Q Consensus 60 la~~lt~~~l~~lw~iPv-~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~-~~fgN~~~LPl~lv~slc~~~~~pfg~ 137 (332)
++.++|++++.++..=-+ ..+++...+.+.++.+.|.++.|++.--++=+. +.-|++ = +.|+ ++-.+..+
T Consensus 79 lG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGas---A---iaA~--~pvika~~ 150 (334)
T COG2855 79 LGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGAS---A---IAAT--APVIKAEE 150 (334)
T ss_pred HcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccchhhHHH---H---HHHh--CCcCCCCc
Confidence 688999999999984333 244555667778999999999999876554221 111221 0 1111 34444444
Q ss_pred ccchhhhhhHHHHHHHhhhhhhhhhhhhhhhhcch
Q 020023 138 RDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSS 172 (332)
Q Consensus 138 ~d~c~~~g~aY~~~~~~lG~il~WS~gy~llr~~~ 172 (332)
+| ....++-+.++-+++. +.|.+-|+++--++
T Consensus 151 ~e--va~aIa~V~lfgtia~-llyP~l~~~l~l~~ 182 (334)
T COG2855 151 EE--VAVAIAVVVLFGTLAM-LLYPLLYPLLGLSP 182 (334)
T ss_pred cc--cceehhhHHHHHHHHH-HHHHHHHHHhCCCc
Confidence 44 5567777888877765 77888888776443
No 21
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.22 E-value=29 Score=29.52 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHhhcCCC
Q 020023 79 VAMTFLIGGILGWIVVKLLRPK 100 (332)
Q Consensus 79 ~~l~~~ig~~lg~~~~~i~~~p 100 (332)
+++.+++|.++||++.|.+...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999986554
No 22
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=38.16 E-value=58 Score=34.22 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHH--HHH
Q 020023 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGG--ILG 90 (332)
Q Consensus 13 ~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~ig~--~lg 90 (332)
|-+.+++++.+|.-.|. |.|.++.-.||.+.+.--...+|..+|.-+-+++- .|..-+-++|+...+-..+|. +.|
T Consensus 89 ~pLG~vlv~mlgvgvae-~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLAE-RVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 45677888888877774 79999999999999998888888886655555443 222226688887776554432 222
Q ss_pred HHhHhhcCCCCCCCCeeeEEeecCCcchhHH--------HHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhh
Q 020023 91 WIVVKLLRPKPHLEGLVIATCASGNLGNLLL--------IIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWS 162 (332)
Q Consensus 91 ~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl--------~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS 162 (332)
-..+. |.++.|.+.|+-+ .+.+..++.-+.-+.-+ -.-++-|...+..+-.+..|-
T Consensus 167 ia~~f-------------agvs~GfsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~---~~~N~~F~~~s~~vl~~v~~~ 230 (508)
T PRK11339 167 LLAAI-------------AGVGCGFTANLLIVTTDVLLSGISTEAAAAFNPQMHVS---VIDNWYFMASSVVVLTIVGGL 230 (508)
T ss_pred HHHHH-------------HHHHhhhhhhhccccchhhHHHHHHHHHHhcCCCcccC---ccccHHHHHHHHHHHHHHHHH
Confidence 22211 2334455555544 44444444222111111 112233344444455566666
Q ss_pred hhhhhhhcchh
Q 020023 163 YSYQLIKQSSV 173 (332)
Q Consensus 163 ~gy~llr~~~~ 173 (332)
|.-+.++++.+
T Consensus 231 vt~k~vePrlg 241 (508)
T PRK11339 231 ITDKIIEPRLG 241 (508)
T ss_pred HhhheeCCCCC
Confidence 66677776643
No 23
>PRK05326 potassium/proton antiporter; Reviewed
Probab=37.84 E-value=1.9e+02 Score=30.23 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=52.9
Q ss_pred HHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHH-HHHHHHH-HHHHHHhHhhcCC
Q 020023 22 VLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNV-AMTFLIG-GILGWIVVKLLRP 99 (332)
Q Consensus 22 ~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~-~l~~~ig-~~lg~~~~~i~~~ 99 (332)
++|..++ +......+.-+...+..-.+|.|. +|..++-.++++++.+.|..-+.+ ++..+++ .+..|+..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4455555 333333332333333334456654 799999999999988765432222 1222233 3333444556676
Q ss_pred CCCCCCeeeEEeecCCcchhHHHHHH
Q 020023 100 KPHLEGLVIATCASGNLGNLLLIIVP 125 (332)
Q Consensus 100 p~~~~~~~ia~~~fgN~~~LPl~lv~ 125 (332)
|.+++-++-- .|-=|..|+++..
T Consensus 329 ~~~e~~~i~~---~g~RG~v~i~lA~ 351 (562)
T PRK05326 329 NLREKLFISW---VGLRGAVPIVLAT 351 (562)
T ss_pred CHhhhheeee---ecchhHHHHHHHH
Confidence 6665544433 2567888877653
No 24
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.95 E-value=46 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhc
Q 020023 73 WFMPVNVAMTFLIGGILGWIVVKLL 97 (332)
Q Consensus 73 w~iPv~~~l~~~ig~~lg~~~~~i~ 97 (332)
+.+.+.+++++++|.++||++....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555668888999999999877653
No 25
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=36.87 E-value=1.3e+02 Score=29.67 Aligned_cols=107 Identities=22% Similarity=0.335 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHH-HHHHHHHHHHH
Q 020023 12 MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNV-AMTFLIGGILG 90 (332)
Q Consensus 12 ~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~-~l~~~ig~~lg 90 (332)
++.+-+++=-.+|.++. =||+|.||.+++-+ .+..|-+-| .|+..++++++.+=.+-=+.. ++++.+.....
T Consensus 169 ~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 169 MSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 34444555556788664 58999999999875 455676666 599999999999977544443 33344555566
Q ss_pred HHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHh
Q 020023 91 WIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (332)
Q Consensus 91 ~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~s 126 (332)
++.-|..+-.+..-+.. +.+.+||.-.-|-++-++
T Consensus 242 ~~~dr~i~~~~g~aG~A-~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 242 YLADRLILKGNGVAGAA-ISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHcCCCCceeeh-HHhhhhhhhhhhHHHHHh
Confidence 66666643222333333 347789999999776554
No 26
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=36.05 E-value=96 Score=31.21 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=47.7
Q ss_pred hhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHhHhhcCCCC
Q 020023 37 ADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLI-GGILGWIVVKLLRPKP 101 (332)
Q Consensus 37 ~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l~~~i-g~~lg~~~~~i~~~p~ 101 (332)
++..+.+..+...+|.| +-|..++-+++++.+.+-|..-+...+..++ =.+..|+.+|.++.++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~ 328 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSK 328 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 57778888888777777 6799999999999999988774444443444 4455888899998443
No 27
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=33.23 E-value=47 Score=32.46 Aligned_cols=101 Identities=11% Similarity=0.176 Sum_probs=61.8
Q ss_pred hhcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHhH-hhcCCCCCCCCeeeEEee--cCCcchhHHHHHHhhhccCCCCC
Q 020023 60 LAKTVTLEEIISWWFM-PVNVAMTFLIGGILGWIVV-KLLRPKPHLEGLVIATCA--SGNLGNLLLIIVPAICHEQGSPF 135 (332)
Q Consensus 60 la~~lt~~~l~~lw~i-Pv~~~l~~~ig~~lg~~~~-~i~~~p~~~~~~~ia~~~--fgN~~~LPl~lv~slc~~~~~pf 135 (332)
++.+++++++.+...- -+...+.......+++.+. |++|.|++..-.+ +++. -|++ =++-+... .+=
T Consensus 69 lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Li-a~GtsICG~S---Ai~A~a~~-----i~a 139 (305)
T PF03601_consen 69 LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILI-AAGTSICGAS---AIAATAPV-----IKA 139 (305)
T ss_pred HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-HhhcccchHH---HHHHHccc-----ccC
Confidence 7889999999999873 3446667777788888888 9999998865443 2221 1211 11111111 111
Q ss_pred CCccchhhhhhHHHHHHHhhhhhhhhhhhhhhhhcch
Q 020023 136 GNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSS 172 (332)
Q Consensus 136 g~~d~c~~~g~aY~~~~~~lG~il~WS~gy~llr~~~ 172 (332)
.++| ....++-+.++-.+. ++.+-+-++++--++
T Consensus 140 ~~~~--~a~ava~V~lfg~va-m~~~P~l~~~l~l~~ 173 (305)
T PF03601_consen 140 KEED--VAYAVATVFLFGTVA-MFLYPLLGHALGLSP 173 (305)
T ss_pred CCCc--eeeeehHHHHHHHHH-HHHHHHHHHHhCCCH
Confidence 1222 445566666666654 477888888776663
No 28
>PRK01844 hypothetical protein; Provisional
Probab=32.63 E-value=68 Score=24.95 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q 020023 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (332)
Q Consensus 72 lw~iPv~~~l~~~ig~~lg~~~~~i 96 (332)
.|+.-+..++..++|.+.|+.++|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665566778888999999988764
No 29
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=32.23 E-value=13 Score=40.16 Aligned_cols=104 Identities=19% Similarity=0.356 Sum_probs=68.7
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC--CCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCC
Q 020023 58 ASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP--KPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPF 135 (332)
Q Consensus 58 s~la~~lt~~~l~~lw~iPv~~~l~~~ig~~lg~~~~~i~~~--p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pf 135 (332)
+||=+. .++.=+||+.-+.+ ++..++..++.-.+- --++-|+++| |+++=...+|+.+++|...+ . .
T Consensus 432 trlMkk--YKeVP~WWf~~ili-----~s~~l~~~~~~~~~~~~q~PwWg~~va-~~ia~vf~iPigii~AtTNq--~-~ 500 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWFLAILI-----VSLGLGLAACEGYKTQVQLPWWGLLVA-CAIAFVFTIPIGIIQATTNQ--T-P 500 (761)
T ss_pred HHHHHH--hccCcHHHHHHHHH-----HHHHHHhhheeeecccccCchHHHHHH-HHHHHHHhccHHHhhhhccC--C-c
Confidence 444444 67778899876643 233344444444443 5566777776 77888899999999999543 2 1
Q ss_pred CCccchhhhhhHHHHHHHhhhhhhhhhhhhhhhhcchh
Q 020023 136 GNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSV 173 (332)
Q Consensus 136 g~~d~c~~~g~aY~~~~~~lG~il~WS~gy~llr~~~~ 173 (332)
|- +.-.+.=+.|+.=..=++.+..-+|||.-|+....
T Consensus 501 GL-NiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~ 537 (761)
T KOG2262|consen 501 GL-NIITEYIIGYIYPGRPIANLCFKTYGYISMTQALT 537 (761)
T ss_pred cH-HHHHHHHHHhhcCCchHHHHHHHHhchhhHHHHHH
Confidence 21 33445556677667778889999999998876543
No 30
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=31.89 E-value=3e+02 Score=29.21 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhccch-hhhhhhhHHHHHhhhcccchhhHHHHHHHHHH---
Q 020023 3 FWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKM-VFTVFTPSLMFASLAKTVTLEEIISWWFMPVN--- 78 (332)
Q Consensus 3 ~~~l~~~a~~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~l-v~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~--- 78 (332)
+.+++ ...|++=+++++++||++. |..+ |.+|== +--++.=.|++..++.++... ++++.++-.-
T Consensus 3 ~~~~l--~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~-v~~~gl~lFvy~v 71 (562)
T TIGR03802 3 LHNLL--RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPG-VKAVFFALFIFAI 71 (562)
T ss_pred HHHHH--HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHHh
Q ss_pred ----------------------HHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCC
Q 020023 79 ----------------------VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFG 136 (332)
Q Consensus 79 ----------------------~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg 136 (332)
.++..++|.++.|.+.|++..++..-..+.+ ++--|+-.|=-+ .+++ .+-+..-.
T Consensus 72 G~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~a-GalT~tp~l~aA-~~a~-~~~~~~~~ 148 (562)
T TIGR03802 72 GYEVGPQFFASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAA-GGLTQSAVIGTA-GDAI-EKLGLSPE 148 (562)
T ss_pred hhccCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh-chhhccHHHHHH-HHHH-HhcCCCcc
Q ss_pred -----CccchhhhhhHHHHHHHhhhhhhhhhhhhh-hhhcchhhHHhhhcc
Q 020023 137 -----NRDVCSSVGLSYASFSMALGGFFIWSYSYQ-LIKQSSVRYKALAQA 181 (332)
Q Consensus 137 -----~~d~c~~~g~aY~~~~~~lG~il~WS~gy~-llr~~~~~~~~~~~~ 181 (332)
..+....++++|. +-.+|.++.-.+... ++|...+++.+.-++
T Consensus 149 ~~~~~~~~~avgYav~Yp--fGvig~i~~~~~~~p~l~~~~~~~e~~~~~~ 197 (562)
T TIGR03802 149 QKTAYQGNVAVAYAVTYI--FGTIGVIIVLVNILPWLMGIDLREAAKKLEA 197 (562)
T ss_pred hhhccccccceeeehhhh--hHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
No 31
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=31.62 E-value=1e+02 Score=30.58 Aligned_cols=69 Identities=20% Similarity=0.460 Sum_probs=53.0
Q ss_pred hhhhHHHHHhhhcccchhhHHHHH----HHHHHHHHHHHHHHHHHHHhHhhcCCCCCCC-CeeeEEeecCCcch
Q 020023 50 VFTPSLMFASLAKTVTLEEIISWW----FMPVNVAMTFLIGGILGWIVVKLLRPKPHLE-GLVIATCASGNLGN 118 (332)
Q Consensus 50 ~F~P~LiFs~la~~lt~~~l~~lw----~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~-~~~ia~~~fgN~~~ 118 (332)
.-..+++|--.+-++|.+|+++.| ..-+..+.+|++==++||+++++++.|++.. |.+..||.=|-..+
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhH
Confidence 455678999999999999998766 5556677788888889999999999988864 55555555554444
No 32
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.66 E-value=83 Score=24.40 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 020023 71 SWWFMPVNVAMTFLIGGILGWIVVKL 96 (332)
Q Consensus 71 ~lw~iPv~~~l~~~ig~~lg~~~~~i 96 (332)
++|..-+.+++..++|.+.|+.++|-
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIARK 27 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666688888889999999887764
No 33
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=29.31 E-value=1.3e+02 Score=32.23 Aligned_cols=104 Identities=10% Similarity=0.126 Sum_probs=59.9
Q ss_pred hhhhhHHHHHhhhcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCC-cchhHHHHHHh
Q 020023 49 TVFTPSLMFASLAKTVTLEEIIS-WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGN-LGNLLLIIVPA 126 (332)
Q Consensus 49 ~~F~P~LiFs~la~~lt~~~l~~-lw~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN-~~~LPl~lv~s 126 (332)
.+|+ .+-|..++-++.+..+.+ +|.+-..+++.++.=.+..++.++.++.|.+.+- .++ ...| -|-.-+++. +
T Consensus 271 ~lll-~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~-~~g--l~L~~~Gef~~vl~-~ 345 (621)
T PRK03562 271 GLLL-GLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRR-WFA--VLLGQGGEFAFVVF-G 345 (621)
T ss_pred HHHH-HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHH--HHHhccccHHHHHH-H
Confidence 4666 588999999999998864 4444343444444445667888899998866433 222 1122 233333333 4
Q ss_pred hhccCCCCCCCccchhhhhhHHHHHHHhhhhhhh
Q 020023 127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFI 160 (332)
Q Consensus 127 lc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~ 160 (332)
+..+.+. .+ ++..+-=++.+.++|.+.-++.
T Consensus 346 ~a~~~~~-i~--~~~~~~lv~~v~lS~~~tP~l~ 376 (621)
T PRK03562 346 AAQMANV-LE--PEWAKLLTLAVALSMAATPLLL 376 (621)
T ss_pred HHHHCCC-CC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5545443 22 2244444455667777665443
No 34
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=29.08 E-value=57 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCC
Q 020023 67 EEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLE 104 (332)
Q Consensus 67 ~~l~~lw~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~ 104 (332)
.+..+.|.+++..+.+++.|.+=+++-.|++| ||++
T Consensus 153 ~~~~~~~~~~~~~~~t~v~~~iG~~iG~kllk--KHF~ 188 (189)
T TIGR02185 153 IKYVSAIWAVIMIVLTAVAGIAGVLIGKKLLK--KHFE 188 (189)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcC
Confidence 34556788888888777777777777677765 6654
No 35
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=25.79 E-value=2e+02 Score=24.97 Aligned_cols=48 Identities=15% Similarity=0.378 Sum_probs=35.2
Q ss_pred HHHHhhhcccchhhHHH---HHH-HHHHHHHHHHHHHHHHHHhHhhcCCCCC
Q 020023 55 LMFASLAKTVTLEEIIS---WWF-MPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (332)
Q Consensus 55 LiFs~la~~lt~~~l~~---lw~-iPv~~~l~~~ig~~lg~~~~~i~~~p~~ 102 (332)
++-..++.++|.+++++ +|. .-+..+++.+++.+.+|++.|.++.+..
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ 106 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPL 106 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 35678888887766655 443 4455667778888999999999987764
No 36
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=25.74 E-value=73 Score=28.70 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=29.4
Q ss_pred hhcccchh------hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCC
Q 020023 60 LAKTVTLE------EIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEG 105 (332)
Q Consensus 60 la~~lt~~------~l~~lw~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~~ 105 (332)
.++..+.| ++.+.|.+++..+++++.|.+=+++--|++| ||+++
T Consensus 137 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk--KHF~K 186 (186)
T PF09605_consen 137 IAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK--KHFEK 186 (186)
T ss_pred HHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 34455555 7778888988888777766666666666654 66653
No 37
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=25.36 E-value=2.8e+02 Score=27.41 Aligned_cols=145 Identities=16% Similarity=0.179 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhH-----HHHHHHHHHHHHHHHHHHHH
Q 020023 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEI-----ISWWFMPVNVAMTFLIGGIL 89 (332)
Q Consensus 15 lkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l-----~~lw~iPv~~~l~~~ig~~l 89 (332)
+-++|++.-+|++..+ ++..|-.=..++|.+=.=|+-....|.++=-+=+ .--|.+|+.--+.-++..+-
T Consensus 16 M~~~Cf~yG~fv~~~g-----~d~~~~vAG~Vv~sL~~ICiALf~TAatIIrQli~ty~~~~k~~lP~iGY~~a~~T~i~ 90 (347)
T PF10951_consen 16 MALICFGYGAFVLDYG-----TDSNRFVAGPVVFSLGAICIALFTTAATIIRQLIHTYNTFAKYLLPIIGYLAAAITIIG 90 (347)
T ss_pred HHHHHHHhhHHHcccC-----CCcCceeecceeehHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 4455555555665522 2344444455666666666654444444422211 12368898877777777777
Q ss_pred HHHhHhhcCCCCCC-CCeeeEEeecCCcchhHHHHHHhhhcc---------------CCCCCCCccchhhhhhHHHHHHH
Q 020023 90 GWIVVKLLRPKPHL-EGLVIATCASGNLGNLLLIIVPAICHE---------------QGSPFGNRDVCSSVGLSYASFSM 153 (332)
Q Consensus 90 g~~~~~i~~~p~~~-~~~~ia~~~fgN~~~LPl~lv~slc~~---------------~~~pfg~~d~c~~~g~aY~~~~~ 153 (332)
||....--..|.++ .|+++. | +.++.+-..+ ++.+.+.++++.+++..|+++..
T Consensus 91 G~~~~~~~~~~~~fVaGhVi~----G------vGlItaCVaT~AtSStrF~LIP~Ns~~~~~~~p~~afs~~~~~~Liav 160 (347)
T PF10951_consen 91 GIYIFSSGPNAAYFVAGHVIF----G------VGLITACVATVATSSTRFTLIPKNSKGTSHEVPKGAFSRGQGNILIAV 160 (347)
T ss_pred HHHHhcCCCChhhhccCceee----c------hhHHHHHHHHhhhccccEEEeecCCCCCCCCCChhhcchHHHHHHHHH
Confidence 87763332333332 344433 2 2333322211 22345568889999999988876
Q ss_pred h-hhhhhhhhhhhhhhhcchhh
Q 020023 154 A-LGGFFIWSYSYQLIKQSSVR 174 (332)
Q Consensus 154 ~-lG~il~WS~gy~llr~~~~~ 174 (332)
. +-++.-|-|.+.+++.+++.
T Consensus 161 ~~~~~li~~iw~~~Ll~~~~~~ 182 (347)
T PF10951_consen 161 PILCALIGWIWAIVLLSSSDEH 182 (347)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 5 55678899999999987543
No 38
>COG4129 Predicted membrane protein [Function unknown]
Probab=23.63 E-value=2.2e+02 Score=28.34 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc---cCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHH---------H
Q 020023 8 EVASMPIVQVLLISVLGALMATQ---YWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF---------M 75 (332)
Q Consensus 8 ~~a~~~vlkV~li~~~G~~lA~~---~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~---------i 75 (332)
.-++.-..+-++=|++|.++|.= -.| -++ ..=-++..++.|++++-++...+....+.-.-. .
T Consensus 51 ~~s~~~~~~r~~g~~iG~~~a~l~~~l~g-~~~----~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~~ 125 (332)
T COG4129 51 KRSLKRALQRLLGNALGAILAVLFFLLFG-QNP----IAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFL 125 (332)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccH----HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccchhH
Confidence 44555666777778888766631 122 111 112356678899999999999666555554443 2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCCC
Q 020023 76 PVNVAMTFLIGGILGWIVVKLLRPKPH 102 (332)
Q Consensus 76 Pv~~~l~~~ig~~lg~~~~~i~~~p~~ 102 (332)
-.|=++.+.+|...|.++..++-+|+.
T Consensus 126 ~~~r~l~~~vG~~~a~lvn~~~~~~~~ 152 (332)
T COG4129 126 IFNRFLLVFVGVGVAFLVNLVMPPPDY 152 (332)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchH
Confidence 334678889999999999999988883
No 39
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=22.69 E-value=4.2e+02 Score=22.45 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhh-----hhhhHHHHHhhhcccchhhHHHHHHHH
Q 020023 2 GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFT-----VFTPSLMFASLAKTVTLEEIISWWFMP 76 (332)
Q Consensus 2 ~~~~l~~~a~~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~-----~F~P~LiFs~la~~lt~~~l~~lw~iP 76 (332)
++++-+.+.+...+=.-+++.+.-++ ..+.+|++....+....-. -..|..+-.+..+....++-.+.....
T Consensus 62 sf~~a~~~g~~~~~ia~li~~v~~~i---~~~~IdP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (163)
T PF13858_consen 62 SFGQAFKVGFLISLIAGLISAVFQYI---YFNYIDPDFFENYIEAQIEEMKESGSNPEMIEEQIEQELEMKESFSPFSLA 138 (163)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHcccCHhhHHHHHHHHHHHHHhcCcHHHH
Confidence 45555555444333333333333222 3567788777766665544 234444443333333111111113333
Q ss_pred H-HHHHHHHHHHHHHHHhHhhcC
Q 020023 77 V-NVAMTFLIGGILGWIVVKLLR 98 (332)
Q Consensus 77 v-~~~l~~~ig~~lg~~~~~i~~ 98 (332)
+ .+.-..+.|.+++.+++-++|
T Consensus 139 ~~~~~~~l~~G~i~sli~a~i~k 161 (163)
T PF13858_consen 139 FSGFISNLIFGFIISLIIALILK 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 566667778888888777766
No 40
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=22.44 E-value=1.7e+02 Score=28.88 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhh
Q 020023 83 FLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALG 156 (332)
Q Consensus 83 ~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG 156 (332)
+++|.++|+++.|++...--..+++.+-+ |++++.++ +.++|=.|..+.++-|
T Consensus 82 ~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS--------~LAiiaA~-------------~nsNggLY~aL~~qyG 134 (314)
T TIGR00793 82 IAVAWVVAAIASRIIPEDGVEVGFFAGLS--------TLALVAAM-------------DMTNGGLYASIMQQYG 134 (314)
T ss_pred HHHHHHHHHHHHHHcCcCCccccceeccH--------HHHHHHHH-------------hCCcHHHHHHHHHHcC
No 41
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=22.37 E-value=6.8e+02 Score=25.13 Aligned_cols=144 Identities=15% Similarity=0.239 Sum_probs=84.5
Q ss_pred HHHHHHHH-HHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHH----HHHHHHHHHHHHHHHHHHH
Q 020023 18 LLISVLGA-LMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW----FMPVNVAMTFLIGGILGWI 92 (332)
Q Consensus 18 ~li~~~G~-~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw----~iPv~~~l~~~ig~~lg~~ 92 (332)
.++.-+|. +.- ..|+++ .....+.-+-+..+|+-|+--|- +..+.|+.++. ++-+....++++|.++++.
T Consensus 35 ~v~iy~gamff~--t~Glfs--~~S~~y~~v~n~llpamI~lmLl-qcd~Rki~Klg~rll~ifli~sv~~vlGfIl~yp 109 (384)
T COG5505 35 AVIIYAGAMFFT--TVGLFS--VESPVYDTVWNYLLPAMIPLMLL-QCDVRKIFKLGRRLLFIFLISSVGTVLGFILAYP 109 (384)
T ss_pred HHHHHHHHHHHh--hccccc--ccCcHHHHHHHHHHHHHHHHHHH-HccHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 34444453 233 589994 66666777888999999998764 46888887766 5555566677777777777
Q ss_pred hHhhcCCCCCCC-CeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhhhhhhhcc
Q 020023 93 VVKLLRPKPHLE-GLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (332)
Q Consensus 93 ~~~i~~~p~~~~-~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~gy~llr~~ 171 (332)
+.|=+-. .-|+ +-.+..+-.|-+-| ++-+++.-..++.-|+. .-...-+.|.+.++.+=.+.++.|-.|--.++
T Consensus 110 ~~ksf~g-d~Wka~gmi~gSytGGSaN--mAAmqaaLeVP~~~fsa--tlaaDtv~ySll~~lli~iVpy~~kw~~~tkp 184 (384)
T COG5505 110 LLKSFIG-DLWKAGGMISGSYTGGSAN--MAAMQAALEVPGEYFSA--TLAADTVMYSLLFFLLISIVPYKWKWRHYTKP 184 (384)
T ss_pred HHhhhcc-hHHhhhhheeeeeeCCcch--HHHHHhhhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 7666555 2232 23355455555555 35555554455544542 12233445655555544555555555533333
No 42
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=22.09 E-value=4e+02 Score=27.60 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHH
Q 020023 2 GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAM 81 (332)
Q Consensus 2 ~~~~l~~~a~~~vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~lw~iPv~~~l 81 (332)
|||.++-.+ +|..++-+.||.+|+ .+-.+|.|+++.-.-=+|- +.+-+-.++..-.==+|..+
T Consensus 50 GfW~LL~F~----MQM~lilvtG~~lA~------sp~v~r~l~~la~~p~t~~-------~ai~~v~~vs~~~s~inWG~ 112 (438)
T TIGR00366 50 GFWNLLGFG----MQMALILVTGYALAY------SPIVYKLLKTIASLPKTPK-------QAVALVTFIGSIACWINWGF 112 (438)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHhc------CHHHHHHHHHHHhCCCCCC-------ceeehHHHHHHHHHHHHHhH
Confidence 567666554 688899999999994 3567777777655444441 11222222222222356666
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCCCeeeEEee-------cCCcchhHHHH
Q 020023 82 TFLIGGILGWIVVKLLRPKPHLEGLVIATCA-------SGNLGNLLLII 123 (332)
Q Consensus 82 ~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~-------fgN~~~LPl~l 123 (332)
.-++|++++.-++|-.| +-|+| ..+|++- -|=+++.|+.+
T Consensus 113 gLV~gallAre~Ar~~~-~vdY~-lliAaaY~G~~~W~~GlS~S~pl~~ 159 (438)
T TIGR00366 113 GLVVGAIFAREVARRVK-GSDYP-LLIACAYIGFLTWHGGLSGSMPLLA 159 (438)
T ss_pred HHHHHHHHHHHHHHhcc-CCCHH-HHHHHHHHHHHHHhcchHHHHHHHh
Confidence 77788889998888776 34443 3344332 36678888754
No 43
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=21.21 E-value=1.5e+02 Score=32.96 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=55.9
Q ss_pred HHhhccchhhhhhhhHHHHHhhhcccchhhHHHH---HHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCC
Q 020023 39 ARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW---WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGN 115 (332)
Q Consensus 39 ~~k~ls~lv~~~F~P~LiFs~la~~lt~~~l~~l---w~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN 115 (332)
....+..++..+|+|.+ |...+-.+.+..+.+. +++.+.+++.++.=.+-+++.++.++.|.+.. + +.+...|
T Consensus 315 l~ekle~~~~~lflPlF-Fv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~ea-l--~lG~lm~ 390 (832)
T PLN03159 315 LIEKLEDFVSGLLLPLF-FAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREG-I--TLGFLMN 390 (832)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-H--HHHHHHh
Confidence 34556667778888865 6668999988888653 23333333333333456677788888876632 2 2235556
Q ss_pred cchhHHHHHHhhhccCCC
Q 020023 116 LGNLLLIIVPAICHEQGS 133 (332)
Q Consensus 116 ~~~LPl~lv~slc~~~~~ 133 (332)
.-...-.++..+.++.+.
T Consensus 391 ~kG~~~Lii~~ig~~~gv 408 (832)
T PLN03159 391 TKGLVEMIVLNVGRDQEV 408 (832)
T ss_pred cccHHHHHHHHHHHhcCc
Confidence 655665666677666654
No 44
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=21.14 E-value=2.3e+02 Score=27.63 Aligned_cols=49 Identities=20% Similarity=0.450 Sum_probs=33.3
Q ss_pred HHHHHhhhcccchhhHH---HHHH-HHHHHHHHHHHHHHHHHHhHhhcCCCCC
Q 020023 54 SLMFASLAKTVTLEEII---SWWF-MPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (332)
Q Consensus 54 ~LiFs~la~~lt~~~l~---~lw~-iPv~~~l~~~ig~~lg~~~~~i~~~p~~ 102 (332)
.++-..++.++|.+.+. +||. +-+..+.+..++.+.+|+..|..+.++.
T Consensus 32 ~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~ 84 (318)
T PF05145_consen 32 AILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA 84 (318)
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 45677788888877554 4453 2333556677888899999999776543
No 45
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=21.07 E-value=1.4e+02 Score=29.67 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=58.6
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHH-HHHhH-hhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhcc-------
Q 020023 60 LAKTVTLEEIISWWFMPVNVAMTFLIGGIL-GWIVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHE------- 130 (332)
Q Consensus 60 la~~lt~~~l~~lw~iPv~~~l~~~ig~~l-g~~~~-~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~------- 130 (332)
++.+++++++.+...-.+...+..+++.++ ++.+. |.+|.++++.-.+ +++ .|+|-.
T Consensus 75 lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Li-a~G-------------tsICGaSAi~A~a 140 (335)
T TIGR00698 75 YGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILL-GAG-------------SSICGAAAVAAIE 140 (335)
T ss_pred HCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH-Hcc-------------hhHHHHHHHHHhc
Confidence 688999999999998776655544444444 46666 8999998865443 211 234442
Q ss_pred CCCCCCCccchhhhhhHHHHHHHhhhhhhhhhhhhhhhh
Q 020023 131 QGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (332)
Q Consensus 131 ~~~pfg~~d~c~~~g~aY~~~~~~lG~il~WS~gy~llr 169 (332)
+-.+=+++| ....++-+.++-++. ++.+.+-|+++-
T Consensus 141 ~~i~A~~~~--~a~ava~V~lfgt~a-m~l~P~l~~~l~ 176 (335)
T TIGR00698 141 PVIKAEKEK--VSVAIAIVVIFGTTG-IFLYPSIYHYAS 176 (335)
T ss_pred cccCCCccc--eeeeehHHHHHHHHH-HHHHHHHHHHHc
Confidence 112222223 556666677776665 477888888775
No 46
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.69 E-value=2.3e+02 Score=29.54 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=33.6
Q ss_pred hhhhhHHHHHhhhcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHhHhhcCCCCC
Q 020023 49 TVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWIVVKLLRPKPH 102 (332)
Q Consensus 49 ~~F~P~LiFs~la~~lt~~~l~~lw~iPv~-~~l~~~ig~~lg~~~~~i~~~p~~ 102 (332)
.+|+| +-|..++-++++..+.+-|..-+. +++..+.=.+..++.++.++.|.+
T Consensus 279 ~~f~p-lFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~ 332 (558)
T PRK10669 279 DAFAV-LFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLFGHSRR 332 (558)
T ss_pred HHHHH-HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 66877 789999999999988654432222 222333333445667778877654
No 47
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=20.67 E-value=4.4e+02 Score=27.02 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCChhHHhhccch----hhhhhhhHHHHHhhhccc-chhhHHH---H-HHHHHHHHHHHH
Q 020023 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKM----VFTVFTPSLMFASLAKTV-TLEEIIS---W-WFMPVNVAMTFL 84 (332)
Q Consensus 14 vlkV~li~~~G~~lA~~~~gil~~~~~k~ls~l----v~~~F~P~LiFs~la~~l-t~~~l~~---l-w~iPv~~~l~~~ 84 (332)
..|+++-..+|.++..---.......-|.++++ .-.+..|- +|..+...+ +.++++. + |-.-+.+.+++.
T Consensus 9 ~~qv~iglilGi~~Gl~~~~~~~~~~l~plg~~Fi~Likmii~Pl-Vf~tlv~gIa~~~~~k~~gr~g~ktl~yf~~tt~ 87 (415)
T COG1301 9 YLQVLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPL-VFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTT 87 (415)
T ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 357777777787766421112213334444443 33445554 444466665 4554444 3 355566788888
Q ss_pred HHHHHHHHhHhhcCCCCC
Q 020023 85 IGGILGWIVVKLLRPKPH 102 (332)
Q Consensus 85 ig~~lg~~~~~i~~~p~~ 102 (332)
++.++|.+++.+++|-..
T Consensus 88 ~A~~iGl~~~~~~~Pg~g 105 (415)
T COG1301 88 LAIAIGLVVANVLQPGAG 105 (415)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999999999743
Done!