Query 020023
Match_columns 332
No_of_seqs 125 out of 209
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 93.2 0.25 8.6E-06 47.0 8.4 80 77-164 232-311 (332)
2 3zux_A Transporter, ASBTNM; tr 23.9 2.1E+02 0.0071 26.6 7.7 58 55-112 51-112 (332)
3 2nwl_A GLTPH, glutamate sympor 16.0 2.2E+02 0.0076 27.6 6.1 53 50-102 56-112 (422)
4 1vf5_F Protein PET M; photosyn 13.6 2.8E+02 0.0094 17.7 4.0 26 72-97 5-30 (35)
5 1q90_M Cytochrome B6F complex 11.6 3.4E+02 0.012 17.7 4.0 27 71-97 5-31 (39)
6 1zcd_A Na(+)/H(+) antiporter 1 9.4 83 0.0028 30.5 0.7 96 36-133 248-354 (388)
7 1waz_A MERF; protein structure 8.6 2.8E+02 0.0097 18.7 2.9 27 17-58 5-31 (46)
8 1q90_G Cytochrome B6F complex 6.0 2.4E+02 0.008 18.3 1.4 11 270-280 6-16 (37)
9 2jp3_A FXYD domain-containing 5.1 4.1E+02 0.014 19.3 2.4 33 130-162 5-38 (67)
10 3arc_X Photosystem II PSBX pro 4.9 3.8E+02 0.013 17.5 1.9 9 263-271 3-11 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.20 E-value=0.25 Score=47.01 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcchhHHHHHHhhhccCCCCCCCccchhhhhhHHHHHHHhhh
Q 020023 77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALG 156 (332)
Q Consensus 77 v~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~LPl~lv~slc~~~~~pfg~~d~c~~~g~aY~~~~~~lG 156 (332)
+..++...+++.+||.++|.+|.+++.|..+.-.|+..|+ .+-+.+..+. |+++....-=...|-.+-+..|
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~-------F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH-------FAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH-------STTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH-------cCCCchHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999988877776888888 3444444444 5432234444556777777777
Q ss_pred hhhhhhhh
Q 020023 157 GFFIWSYS 164 (332)
Q Consensus 157 ~il~WS~g 164 (332)
.++.+-|.
T Consensus 304 ~~la~~~~ 311 (332)
T 3zux_A 304 SLLATYWA 311 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=23.95 E-value=2.1e+02 Score=26.58 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHHhhhcccchhhHH----HHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCCCCeeeEEee
Q 020023 55 LMFASLAKTVTLEEII----SWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCA 112 (332)
Q Consensus 55 LiFs~la~~lt~~~l~----~lw~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~ 112 (332)
+++--.+-+++.++++ +++.+-+..+..+++-=+++|.+++.+..++...-.++.++.
T Consensus 51 ~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~ 112 (332)
T 3zux_A 51 IIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGC 112 (332)
T ss_dssp HHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence 5666778899999987 444555667777888888999999998887766544433333
No 3
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=16.04 E-value=2.2e+02 Score=27.56 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=42.3
Q ss_pred hhhhHHHHHhhhcccc---hhhHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcCCCCC
Q 020023 50 VFTPSLMFASLAKTVT---LEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (332)
Q Consensus 50 ~F~P~LiFs~la~~lt---~~~l~~l-w~iPv~~~l~~~ig~~lg~~~~~i~~~p~~ 102 (332)
...|-|+|..+...+. .+++.++ +-.-+.+++++.++.++|.+++.+++|-..
T Consensus 56 miv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 56 MLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4567889999988884 4666665 456667889999999999999999998754
No 4
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=13.59 E-value=2.8e+02 Score=17.73 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhc
Q 020023 72 WWFMPVNVAMTFLIGGILGWIVVKLL 97 (332)
Q Consensus 72 lw~iPv~~~l~~~ig~~lg~~~~~i~ 97 (332)
+.-+.+.+...+.+|..+|+++-|+-
T Consensus 5 If~~A~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 5 MLYAALLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheee
Confidence 34455566777888999999988874
No 5
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=11.55 E-value=3.4e+02 Score=17.72 Aligned_cols=27 Identities=11% Similarity=0.173 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 020023 71 SWWFMPVNVAMTFLIGGILGWIVVKLL 97 (332)
Q Consensus 71 ~lw~iPv~~~l~~~ig~~lg~~~~~i~ 97 (332)
|+.-+.+.+...+.+|..+|+++-|+-
T Consensus 5 EIf~~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 5 FIAGTALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444455666777888999999988873
No 6
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=9.39 E-value=83 Score=30.46 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=61.8
Q ss_pred ChhHHhhccchhhhhhhhHHHHHhhhcccchh---hHHHHHHHHHHHHHHHHHHHHH-----HHHhHhhc--CCCCCC-C
Q 020023 36 TADARRSLNKMVFTVFTPSLMFASLAKTVTLE---EIISWWFMPVNVAMTFLIGGIL-----GWIVVKLL--RPKPHL-E 104 (332)
Q Consensus 36 ~~~~~k~ls~lv~~~F~P~LiFs~la~~lt~~---~l~~lw~iPv~~~l~~~ig~~l-----g~~~~~i~--~~p~~~-~ 104 (332)
.++.++.+...+..+++|-.-|.+.+-+++.+ .+.+- .+..+.+.-++|=.+ +|+.+|.. |.|+.. +
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~--~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~ 325 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSI--LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTY 325 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHH--SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCH
Confidence 46677888889999999999999999998763 34231 111222222333222 45555543 667665 3
Q ss_pred CeeeEEeecCCcchhHHHHHHhhhccCCC
Q 020023 105 GLVIATCASGNLGNLLLIIVPAICHEQGS 133 (332)
Q Consensus 105 ~~~ia~~~fgN~~~LPl~lv~slc~~~~~ 133 (332)
+...+.++-+|++-..=.++..++.+++.
T Consensus 326 ~~~~~vg~L~gigftmsL~Ia~laf~~~~ 354 (388)
T 1zcd_A 326 QQIMVVGILCGIGFTMSIFIASLAFGSVD 354 (388)
T ss_dssp GGGTTHHHHTTCCHHHHHHHHHHHSTTSS
T ss_pred HHHHHHHHHhccchHHHHHHHHHhccCCc
Confidence 45566677789888777777888776553
No 7
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=8.57 E-value=2.8e+02 Score=18.72 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhccCCCCChhHHhhccchhhhhhhhHHHHH
Q 020023 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFA 58 (332)
Q Consensus 17 V~li~~~G~~lA~~~~gil~~~~~k~ls~lv~~~F~P~LiFs 58 (332)
|++..++|.- | -.|.|| ++.+|+|.|.
T Consensus 5 ViL~g~vGLs-a--~vgyLD------------yVLlPaLa~F 31 (46)
T 1waz_A 5 VILLGVVGLS-A--LTGYLD------------YVLLPALAIF 31 (46)
T ss_dssp HHHHHHHHHH-H--CCSCCC------------CCSCCHHHHH
T ss_pred ehhHHHhhHH-H--HHHHHH------------HHHHHHHHHH
Confidence 5567888873 4 478877 5778888653
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.96 E-value=2.4e+02 Score=18.26 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=7.3
Q ss_pred HHHHHHhchhh
Q 020023 270 IVGFIFGAVVW 280 (332)
Q Consensus 270 ilg~iVg~ipp 280 (332)
+.|++.|+||-
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 55777777763
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.14 E-value=4.1e+02 Score=19.34 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=24.3
Q ss_pred cCCCCCC-CccchhhhhhHHHHHHHhhhhhhhhh
Q 020023 130 EQGSPFG-NRDVCSSVGLSYASFSMALGGFFIWS 162 (332)
Q Consensus 130 ~~~~pfg-~~d~c~~~g~aY~~~~~~lG~il~WS 162 (332)
+++.||. |.+.-.-.|+.+..+-..+|.+++-|
T Consensus 5 ~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 5 DKGSPFYYDWESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp STTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCcccchHHheecchhhHHHHHHHHHHHHHc
Confidence 4567885 67777778888888777777776554
No 10
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=4.88 E-value=3.8e+02 Score=17.48 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.4
Q ss_pred ChhHHHHHH
Q 020023 263 APPTLAAIV 271 (332)
Q Consensus 263 ~PP~~Aail 271 (332)
+|.+-..+.
T Consensus 3 TpSL~nFl~ 11 (39)
T 3arc_X 3 TPSLKGFFI 11 (39)
T ss_dssp CHHHHHHHH
T ss_pred ChhHHHHHH
Confidence 344333333
Done!