Query 020023
Match_columns 332
No_of_seqs 125 out of 209
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 10:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 21.2 31 0.0022 20.2 2.4 28 259-286 5-32 (34)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 9.4 5E+02 0.037 22.0 9.2 53 51-103 46-102 (405)
3 d1q90g_ f.23.26.1 (G:) PetG su 4.9 1.5E+02 0.011 16.7 1.4 12 270-281 6-17 (30)
4 d1c1da1 c.2.1.7 (A:149-349) Ph 4.6 2.9E+02 0.021 21.6 3.7 38 82-119 4-41 (201)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 4.1 2.4E+02 0.017 15.3 1.8 17 14-30 2-18 (27)
6 d1m8pa3 c.37.1.15 (A:391-573) 4.0 2.2E+02 0.016 20.0 2.4 23 100-122 1-23 (183)
7 d2ij2a1 a.104.1.1 (A:3-455) Cy 3.8 2.4E+02 0.017 23.6 2.8 31 133-164 389-420 (453)
8 d1g8fa3 c.37.1.15 (A:390-511) 3.7 2.9E+02 0.021 20.3 2.8 30 100-129 1-32 (122)
9 d1q90m_ f.23.25.1 (M:) PetM su 3.2 4.6E+02 0.033 14.7 3.1 18 79-96 12-29 (34)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 3.1 4.6E+02 0.033 20.9 3.9 19 98-116 371-390 (447)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.24 E-value=31 Score=20.19 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.1
Q ss_pred HHhhChhHHHHHHHHHHhchhhhhHhhc
Q 020023 259 EELLAPPTLAAIVGFIFGAVVWLRNLII 286 (332)
Q Consensus 259 ~~~~~PP~~Aailg~iVg~ippLr~~lf 286 (332)
++|||=-+.+++-|...|..-|+-+-|+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5788888999999999999888877664
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.41 E-value=5e+02 Score=22.02 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=39.6
Q ss_pred hhhHHHHHhhhccc-ch--hhHHHHH-HHHHHHHHHHHHHHHHHHHhHhhcCCCCCC
Q 020023 51 FTPSLMFASLAKTV-TL--EEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHL 103 (332)
Q Consensus 51 F~P~LiFs~la~~l-t~--~~l~~lw-~iPv~~~l~~~ig~~lg~~~~~i~~~p~~~ 103 (332)
..+-|+|.++...+ ++ +++.++. -.-..+++++.++..+|++++.++++....
T Consensus 46 ~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~ 102 (405)
T d2nwwa1 46 LVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGI 102 (405)
T ss_dssp HHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45778888887776 22 4555554 455668889999999999999999987654
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.86 E-value=1.5e+02 Score=16.67 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=8.6
Q ss_pred HHHHHHhchhhh
Q 020023 270 IVGFIFGAVVWL 281 (332)
Q Consensus 270 ilg~iVg~ippL 281 (332)
+.|++.|+||--
T Consensus 6 l~GivlGlipiT 17 (30)
T d1q90g_ 6 LCGIVLGLVPVT 17 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHhhHHHH
Confidence 567888888843
No 4
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}
Probab=4.58 E-value=2.9e+02 Score=21.63 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCCCeeeEEeecCCcchh
Q 020023 82 TFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119 (332)
Q Consensus 82 ~~~ig~~lg~~~~~i~~~p~~~~~~~ia~~~fgN~~~L 119 (332)
+|..|.+.+.--.--.+-...+++..++..+|||.|.=
T Consensus 4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~ 41 (201)
T d1c1da1 4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGS 41 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHH
Confidence 44555544433221123334689999999999999864
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.15 E-value=2.4e+02 Score=15.27 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 020023 14 IVQVLLISVLGALMATQ 30 (332)
Q Consensus 14 vlkV~li~~~G~~lA~~ 30 (332)
|+-+++.++.|.+.|.+
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 45567788888777753
No 6
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=4.01 E-value=2.2e+02 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.8
Q ss_pred CCCCCCeeeEEeecCCcchhHHH
Q 020023 100 KPHLEGLVIATCASGNLGNLLLI 122 (332)
Q Consensus 100 p~~~~~~~ia~~~fgN~~~LPl~ 122 (332)
|+..+|++|..++.+-+|-==++
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 78999999999999999876655
No 7
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=3.83 E-value=2.4e+02 Score=23.58 Aligned_cols=31 Identities=23% Similarity=0.560 Sum_probs=23.5
Q ss_pred CCCCC-ccchhhhhhHHHHHHHhhhhhhhhhhh
Q 020023 133 SPFGN-RDVCSSVGLSYASFSMALGGFFIWSYS 164 (332)
Q Consensus 133 ~pfg~-~d~c~~~g~aY~~~~~~lG~il~WS~g 164 (332)
.|||. ...|..+.+|+.-+.+.+..+ +|.|-
T Consensus 389 ~pFG~G~r~C~G~~~A~~~~~~~la~l-l~~f~ 420 (453)
T d2ij2a1 389 KPFGNGQRACIGQQFALHEATLVLGMM-LKHFD 420 (453)
T ss_dssp CTTCCGGGSCTTHHHHHHHHHHHHHHH-HHHEE
T ss_pred cCCCCCCccChhHHHHHHHHHHHHHHH-HHhCE
Confidence 37874 678999999999999888664 44443
No 8
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.71 E-value=2.9e+02 Score=20.34 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=26.6
Q ss_pred CCCCCCeeeEEeecCCcc--hhHHHHHHhhhc
Q 020023 100 KPHLEGLVIATCASGNLG--NLLLIIVPAICH 129 (332)
Q Consensus 100 p~~~~~~~ia~~~fgN~~--~LPl~lv~slc~ 129 (332)
|++.+||++...+..|+| .|-.+|...+-+
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999997 888888888855
No 9
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.24 E-value=4.6e+02 Score=14.73 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 020023 79 VAMTFLIGGILGWIVVKL 96 (332)
Q Consensus 79 ~~l~~~ig~~lg~~~~~i 96 (332)
.+-.+.+|..+|+++-|+
T Consensus 12 mig~tl~glaigfvllrv 29 (34)
T d1q90m_ 12 MVGMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheee
Confidence 344577788888887664
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.14 E-value=4.6e+02 Score=20.93 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=10.9
Q ss_pred CCCCCCCCeeeEEe-ecCCc
Q 020023 98 RPKPHLEGLVIATC-ASGNL 116 (332)
Q Consensus 98 ~~p~~~~~~~ia~~-~fgN~ 116 (332)
..|++.|+...+.. .++|.
T Consensus 371 ~~p~~~~g~~~g~~~~~~~~ 390 (447)
T d1pw4a_ 371 LAPKKAAGTAAGFTGLFGYL 390 (447)
T ss_dssp TSCTTHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHH
Confidence 35677777666532 44555
Done!