BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020024
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276
P +K + +KY ++ +GD V D L +AD+GI IG+ + +
Sbjct: 192 PHEKAEKVKEVQQKY------VTAMVGDGVNDAPALAQADVGIAIGAGTDV 236
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 213 SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 272
SI E+IEK + + K +RK++ GD V D L +ADIGI +
Sbjct: 548 SIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVAD 607
Query: 273 SSSLRRVGSQFGVTFIPLYPGL 294
++ R S +T PGL
Sbjct: 608 ATDAARGASDIVLT----EPGL 625
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276
P +K + +KY ++ +GD V D L +AD+GI IG+ + +
Sbjct: 192 PHEKAEKVKEVQQKY------VTAMVGDGVNDAPALAQADVGIAIGAGTDV 236
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 245 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276
K + ++GD + D L +AD+GI +GS S +
Sbjct: 204 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 235
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 203 VHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLL 262
V ANE + TG ++ + K A ++ G +V +GD D+ L
Sbjct: 298 VAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQ-TVAVGDGANDIDMLA 356
Query: 263 EADIGIVIGSSSSLRRV 279
A +GI + +LR V
Sbjct: 357 AAGLGIAFNAKPALREV 373
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 245 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276
K + ++GD + D L +AD+GI +GS S +
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 255
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 245 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276
K + ++GD + D L +AD+GI +GS S +
Sbjct: 224 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 255
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 245 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276
K + ++GD + D L +AD+GI +GS S +
Sbjct: 596 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 627
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 245 KNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276
K + ++GD + D L +AD+GI +GS S +
Sbjct: 518 KEVVAFVGDGINDAPALAQADLGIAVGSGSDV 549
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 210 FKESISTGEIIEKVESPIDKV---QAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 265
K ++ EI EK+E K+ N L G N + + + GD L D
Sbjct: 78 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 137
Query: 266 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 302
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 138 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 175
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 245 KNLSVYIGDSVGDLLCLLEADIGIVIGS 272
K + ++GD + D L +AD+GI +GS
Sbjct: 83 KEVVAFVGDGINDAPALAQADLGIAVGS 110
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 210 FKESISTGEIIEKVESPIDKV---QAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 265
K ++ EI EK+E K+ N L G N + + + GD L D
Sbjct: 79 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 138
Query: 266 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 302
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 139 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 176
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 216 TGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI------- 268
TG+++ +V S K ++Y + N +V +GD DL+ + A +G+
Sbjct: 233 TGQVLGEVVSAQTKADILLTLAQQYDVEIHN-TVAVGDGANDLVMMAAAGLGVAYHAKPK 291
Query: 269 VIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKEKSG 314
V + + R GV I L LV +QK +WK K G
Sbjct: 292 VEAKAQTAVRFAGLGGVVCI-LSAALVAQQK-------LSWKSKEG 329
>pdb|3T8R|A Chain A, Crystal Structure Of Staphylococcus Aureus Cymr
Length = 143
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 188 LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNL 247
LIR+ + G L V A E IS G+II +E PI F ++E +K L
Sbjct: 57 LIRSVRGAKGGYQLRVPAEE------ISAGDIIRLLEGPI----TFVESIESEPPAQKQL 106
Query: 248 SVYIGDSVGDLL 259
+ + D+V D+L
Sbjct: 107 WIRMRDAVRDVL 118
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 210 FKESISTGEIIEKVESPIDKV---QAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 265
K ++ EI EK+E K+ N L G N + + + GD L D
Sbjct: 187 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 246
Query: 266 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 302
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 247 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 284
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 210 FKESISTGEIIEKVES---PIDKVQAFNNTLE-KYGTDRKNLSVYIGDSVGDLLCLLEAD 265
K ++ EI EK+E + K N L G N + + + GD L D
Sbjct: 187 IKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDD 246
Query: 266 I-GIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 302
I I G+ S R + F VTF P Y L+K K+ T
Sbjct: 247 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDAT 284
>pdb|3T8T|A Chain A, Crystal Structure Of Staphylococcus Aureus Cymr Oxidized
Form
Length = 143
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 188 LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNL 247
LIR+ + G L V A E IS G+II +E PI F ++E +K L
Sbjct: 57 LIRSVRGAKGGYQLRVPAEE------ISAGDIIRLLEGPI----TFVESIESEPPAQKQL 106
Query: 248 SVYIGDSVGDLL 259
+ + D+V D+L
Sbjct: 107 WIRMRDAVRDVL 118
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 243 DRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYT 302
D+ + GD V D L +ADIGI +G+ + + GVT + + K + +
Sbjct: 614 DKGLIVAMAGDGVNDAPALAKADIGIAMGTGTDVAI--ESAGVTLLHGDLRGIAKARRLS 671
Query: 303 EGSSSNWKE 311
E + SN ++
Sbjct: 672 ESTMSNIRQ 680
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 247 LSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQF 283
++ GD V D L +A+IGI +GS +++ + S+
Sbjct: 698 ITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEM 734
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 247 LSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQF 283
++ GD V D L +A+IGI +GS +++ + S+
Sbjct: 697 ITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEM 733
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 247 LSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQF 283
++ GD V D L +A+IGI +GS +++ + S+
Sbjct: 697 ITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEM 733
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 247 LSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQF 283
++ GD V D L +A+IGI +GS +++ + S+
Sbjct: 696 ITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEM 732
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,810,927
Number of Sequences: 62578
Number of extensions: 399831
Number of successful extensions: 1109
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 26
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)