Query 020024
Match_columns 332
No_of_seqs 227 out of 1687
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01544 HAD-SF-IE haloacid d 100.0 5.3E-30 1.1E-34 236.1 20.2 228 29-288 20-262 (277)
2 COG0560 SerB Phosphoserine pho 100.0 2.8E-28 6E-33 218.5 18.4 199 29-287 3-202 (212)
3 COG4359 Uncharacterized conser 99.9 1.2E-25 2.6E-30 190.8 15.9 203 30-299 2-212 (220)
4 TIGR03333 salvage_mtnX 2-hydro 99.9 4.4E-25 9.5E-30 198.2 18.4 193 33-292 1-200 (214)
5 PRK09552 mtnX 2-hydroxy-3-keto 99.9 1.3E-24 2.8E-29 195.7 18.2 195 31-292 3-204 (219)
6 PRK11133 serB phosphoserine ph 99.9 9.7E-25 2.1E-29 207.0 17.8 194 29-282 108-301 (322)
7 TIGR01545 YfhB_g-proteo haloac 99.9 1.2E-23 2.6E-28 188.5 19.3 133 136-279 67-209 (210)
8 PF06888 Put_Phosphatase: Puta 99.9 3.2E-23 6.9E-28 187.3 18.4 137 140-282 56-208 (234)
9 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.9 8.7E-23 1.9E-27 180.8 17.9 134 136-276 61-202 (202)
10 PF05822 UMPH-1: Pyrimidine 5' 99.9 1.6E-23 3.5E-28 188.9 13.2 200 75-288 15-230 (246)
11 TIGR01488 HAD-SF-IB Haloacid D 99.9 6.4E-23 1.4E-27 177.6 15.4 121 137-264 53-177 (177)
12 TIGR00338 serB phosphoserine p 99.9 4.6E-22 1E-26 178.4 18.9 138 137-281 67-204 (219)
13 TIGR02137 HSK-PSP phosphoserin 99.9 2.4E-22 5.1E-27 179.1 16.3 128 140-282 53-181 (203)
14 KOG3128 Uncharacterized conser 99.9 1.7E-23 3.7E-28 185.7 8.7 228 28-288 35-279 (298)
15 PRK11590 hypothetical protein; 99.9 2.3E-21 5E-26 173.7 18.0 130 139-279 71-210 (211)
16 KOG1615 Phosphoserine phosphat 99.9 1.8E-22 4E-27 173.0 10.2 176 30-266 15-194 (227)
17 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 6.3E-21 1.4E-25 168.2 18.8 134 141-282 66-200 (201)
18 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 2.4E-19 5.2E-24 156.3 17.8 122 141-272 58-187 (188)
19 PLN02954 phosphoserine phospha 99.8 2.2E-19 4.7E-24 161.6 17.5 180 30-270 11-194 (224)
20 KOG3120 Predicted haloacid deh 99.8 1E-19 2.2E-24 159.1 13.9 177 29-263 11-200 (256)
21 PRK13582 thrH phosphoserine ph 99.7 2E-16 4.3E-21 140.3 17.7 120 141-275 54-174 (205)
22 PF12710 HAD: haloacid dehalog 99.7 5.3E-17 1.1E-21 142.0 11.8 100 155-262 85-192 (192)
23 PLN02177 glycerol-3-phosphate 99.6 2.7E-14 5.8E-19 142.6 19.0 122 137-273 85-216 (497)
24 PRK08238 hypothetical protein; 99.5 1E-13 2.3E-18 138.1 15.1 117 153-292 70-186 (479)
25 PRK13222 phosphoglycolate phos 99.3 3.1E-10 6.7E-15 101.8 18.7 102 153-271 91-193 (226)
26 PLN03243 haloacid dehalogenase 99.3 1.1E-10 2.5E-15 107.9 15.7 97 153-268 107-205 (260)
27 PRK10826 2-deoxyglucose-6-phos 99.3 1.7E-10 3.8E-15 103.7 15.2 105 152-273 89-193 (222)
28 TIGR01449 PGP_bact 2-phosphogl 99.2 3.5E-10 7.6E-15 100.6 15.5 98 153-269 83-182 (213)
29 PRK13288 pyrophosphatase PpaX; 99.2 5.4E-10 1.2E-14 99.8 15.8 98 153-269 80-179 (214)
30 cd01427 HAD_like Haloacid deha 99.2 1.1E-10 2.4E-15 94.8 9.8 110 152-266 21-134 (139)
31 TIGR01428 HAD_type_II 2-haloal 99.2 2.3E-09 5.1E-14 94.5 19.1 105 149-272 86-193 (198)
32 TIGR03351 PhnX-like phosphonat 99.2 3.4E-10 7.3E-15 101.5 13.6 98 153-268 85-186 (220)
33 PLN02575 haloacid dehalogenase 99.1 1.2E-09 2.6E-14 105.7 15.0 98 153-269 214-313 (381)
34 PRK13226 phosphoglycolate phos 99.1 6.6E-09 1.4E-13 94.1 18.2 98 153-269 93-192 (229)
35 TIGR01422 phosphonatase phosph 99.1 2.5E-09 5.4E-14 98.1 15.6 98 152-267 96-196 (253)
36 PRK13225 phosphoglycolate phos 99.1 2.4E-09 5.3E-14 99.7 15.7 96 152-267 139-234 (273)
37 TIGR02253 CTE7 HAD superfamily 99.1 3.5E-09 7.5E-14 94.8 15.8 101 153-272 92-196 (221)
38 TIGR01454 AHBA_synth_RP 3-amin 99.1 2.2E-09 4.8E-14 95.2 14.3 99 152-269 72-172 (205)
39 PRK13478 phosphonoacetaldehyde 99.1 6.2E-09 1.3E-13 96.5 17.6 97 153-267 99-198 (267)
40 PRK13223 phosphoglycolate phos 99.1 5.1E-09 1.1E-13 97.5 16.4 98 153-267 99-196 (272)
41 PRK11587 putative phosphatase; 99.1 7.7E-09 1.7E-13 92.8 16.7 101 152-271 80-182 (218)
42 PLN02770 haloacid dehalogenase 99.1 6.6E-09 1.4E-13 95.3 16.4 98 153-269 106-205 (248)
43 PRK14988 GMP/IMP nucleotidase; 99.0 9.4E-09 2E-13 93.0 15.4 98 151-267 89-188 (224)
44 TIGR02009 PGMB-YQAB-SF beta-ph 99.0 1E-08 2.2E-13 89.0 15.0 96 153-269 86-183 (185)
45 PRK09449 dUMP phosphatase; Pro 99.0 2.1E-08 4.6E-13 90.0 17.5 100 153-271 93-196 (224)
46 PF00702 Hydrolase: haloacid d 99.0 1.4E-09 3E-14 96.2 9.4 89 153-265 125-215 (215)
47 TIGR01990 bPGM beta-phosphoglu 99.0 5.8E-09 1.3E-13 90.6 13.0 95 154-269 86-182 (185)
48 COG0546 Gph Predicted phosphat 99.0 7.5E-09 1.6E-13 93.3 13.7 94 154-266 88-183 (220)
49 TIGR02252 DREG-2 REG-2-like, H 99.0 3.6E-08 7.7E-13 87.2 17.7 94 154-267 104-200 (203)
50 PRK09456 ?-D-glucose-1-phospha 99.0 4.7E-08 1E-12 86.5 17.9 121 143-282 70-196 (199)
51 PF13419 HAD_2: Haloacid dehal 99.0 4E-08 8.6E-13 83.4 16.2 98 152-268 74-173 (176)
52 TIGR01549 HAD-SF-IA-v1 haloaci 98.9 3.8E-08 8.3E-13 83.1 13.2 91 153-265 62-154 (154)
53 PLN02779 haloacid dehalogenase 98.9 2E-07 4.4E-12 87.4 19.1 103 154-271 143-245 (286)
54 PRK06698 bifunctional 5'-methy 98.9 3.8E-08 8.1E-13 98.3 14.9 95 153-269 328-424 (459)
55 TIGR02254 YjjG/YfnB HAD superf 98.9 1.2E-07 2.6E-12 84.8 16.6 99 153-271 95-198 (224)
56 PLN02940 riboflavin kinase 98.9 3.9E-08 8.5E-13 95.9 14.0 99 152-269 90-191 (382)
57 TIGR01672 AphA HAD superfamily 98.9 4.5E-08 9.9E-13 89.2 13.1 90 154-266 113-205 (237)
58 TIGR01993 Pyr-5-nucltdase pyri 98.8 1.7E-07 3.6E-12 81.7 16.2 99 153-269 82-182 (184)
59 TIGR01509 HAD-SF-IA-v3 haloaci 98.8 2.7E-07 5.8E-12 79.6 16.7 95 154-268 84-180 (183)
60 PLN02499 glycerol-3-phosphate 98.8 1.7E-07 3.8E-12 92.6 16.7 120 135-271 69-197 (498)
61 TIGR01497 kdpB K+-transporting 98.8 2.6E-08 5.7E-13 102.9 11.2 99 154-280 445-543 (675)
62 TIGR01548 HAD-SF-IA-hyp1 haloa 98.8 2.9E-07 6.4E-12 81.2 15.6 91 156-264 107-197 (197)
63 COG4030 Uncharacterized protei 98.8 1.8E-07 4E-12 83.0 13.9 188 34-273 3-238 (315)
64 PRK10725 fructose-1-P/6-phosph 98.7 1.9E-07 4.1E-12 81.4 13.1 96 153-269 86-183 (188)
65 PRK10563 6-phosphogluconate ph 98.7 3.6E-07 7.7E-12 81.9 15.1 98 153-269 86-183 (221)
66 PRK05446 imidazole glycerol-ph 98.7 9.9E-08 2.1E-12 91.7 11.8 105 154-273 29-150 (354)
67 TIGR01656 Histidinol-ppas hist 98.7 5.5E-08 1.2E-12 82.1 8.8 100 155-267 27-140 (147)
68 PRK01122 potassium-transportin 98.7 9.6E-08 2.1E-12 99.0 11.5 96 154-277 444-539 (679)
69 TIGR01511 ATPase-IB1_Cu copper 98.7 1.2E-07 2.6E-12 97.0 11.4 93 154-275 404-496 (562)
70 TIGR02247 HAD-1A3-hyp Epoxide 98.7 3.8E-07 8.3E-12 81.1 13.3 107 153-278 92-203 (211)
71 TIGR01487 SPP-like sucrose-pho 98.7 3.1E-07 6.7E-12 82.2 12.6 56 224-280 143-199 (215)
72 PHA02597 30.2 hypothetical pro 98.7 5.3E-07 1.2E-11 79.4 13.5 101 152-271 71-173 (197)
73 PRK14010 potassium-transportin 98.7 1.5E-07 3.2E-12 97.5 11.1 96 154-277 440-535 (673)
74 COG2217 ZntA Cation transport 98.6 1.6E-07 3.4E-12 97.6 10.5 93 154-274 536-628 (713)
75 PRK08942 D,D-heptose 1,7-bisph 98.6 2E-07 4.2E-12 81.4 9.6 103 154-269 28-144 (181)
76 PLN02919 haloacid dehalogenase 98.6 7.3E-07 1.6E-11 97.2 15.1 98 155-271 161-262 (1057)
77 PRK12702 mannosyl-3-phosphogly 98.6 3.3E-06 7.1E-11 78.7 16.7 96 176-273 150-254 (302)
78 PRK11009 aphA acid phosphatase 98.6 7.4E-07 1.6E-11 81.3 11.9 90 154-266 113-205 (237)
79 PRK10748 flavin mononucleotide 98.5 7E-06 1.5E-10 74.8 17.4 94 153-271 111-208 (238)
80 TIGR01670 YrbI-phosphatas 3-de 98.5 5.9E-07 1.3E-11 76.5 9.4 86 163-274 36-121 (154)
81 TIGR01512 ATPase-IB2_Cd heavy 98.5 4.3E-07 9.2E-12 92.5 9.8 91 153-271 360-451 (536)
82 TIGR01524 ATPase-IIIB_Mg magne 98.5 6.2E-07 1.4E-11 96.0 11.3 114 154-277 514-634 (867)
83 COG0637 Predicted phosphatase/ 98.5 6.7E-06 1.5E-10 74.2 15.6 104 151-271 82-185 (221)
84 PRK15122 magnesium-transportin 98.4 9.6E-07 2.1E-11 94.9 10.5 114 154-277 549-669 (903)
85 PRK10517 magnesium-transportin 98.4 1.2E-06 2.6E-11 94.1 11.1 112 154-275 549-667 (902)
86 TIGR01647 ATPase-IIIA_H plasma 98.4 1.3E-06 2.8E-11 92.4 11.1 111 154-275 441-564 (755)
87 TIGR01685 MDP-1 magnesium-depe 98.4 1.1E-06 2.4E-11 76.4 8.4 110 152-271 42-156 (174)
88 PRK11033 zntA zinc/cadmium/mer 98.4 1.2E-06 2.5E-11 92.5 10.2 94 154-277 567-660 (741)
89 PLN02811 hydrolase 98.4 4.8E-06 1E-10 74.8 12.3 101 152-269 75-181 (220)
90 TIGR01525 ATPase-IB_hvy heavy 98.4 2.4E-06 5.1E-11 87.4 11.1 99 153-278 382-480 (556)
91 PRK10671 copA copper exporting 98.4 1.9E-06 4.2E-11 92.1 10.9 93 154-274 649-741 (834)
92 PRK09484 3-deoxy-D-manno-octul 98.3 2.3E-06 5E-11 75.0 8.9 85 164-274 57-141 (183)
93 TIGR02726 phenyl_P_delta pheny 98.3 2.2E-06 4.8E-11 74.2 8.7 91 164-280 43-134 (169)
94 TIGR01517 ATPase-IIB_Ca plasma 98.3 2.3E-06 5E-11 92.6 10.8 113 154-276 578-700 (941)
95 TIGR01523 ATPase-IID_K-Na pota 98.3 2.1E-06 4.5E-11 93.6 10.3 109 154-271 645-771 (1053)
96 smart00775 LNS2 LNS2 domain. T 98.3 1.1E-05 2.3E-10 69.1 11.2 103 156-266 28-140 (157)
97 TIGR00213 GmhB_yaeD D,D-heptos 98.3 6.6E-06 1.4E-10 71.4 10.0 109 153-268 24-146 (176)
98 TIGR01522 ATPase-IIA2_Ca golgi 98.3 4.8E-06 1E-10 89.6 11.0 108 155-272 528-644 (884)
99 TIGR01662 HAD-SF-IIIA HAD-supe 98.2 1.1E-05 2.4E-10 66.4 10.3 97 155-271 25-131 (132)
100 TIGR01493 HAD-SF-IA-v2 Haloaci 98.2 6.1E-06 1.3E-10 71.0 8.9 88 151-264 86-175 (175)
101 TIGR01691 enolase-ppase 2,3-di 98.2 3.8E-05 8.2E-10 69.4 14.1 99 153-268 93-192 (220)
102 COG4087 Soluble P-type ATPase 98.2 6E-06 1.3E-10 67.4 7.6 91 155-272 30-120 (152)
103 TIGR01116 ATPase-IIA1_Ca sarco 98.2 7.5E-06 1.6E-10 88.4 10.0 112 154-276 536-661 (917)
104 TIGR01261 hisB_Nterm histidino 98.2 1.3E-05 2.8E-10 68.9 9.4 106 154-273 28-149 (161)
105 TIGR01533 lipo_e_P4 5'-nucleot 98.1 4.4E-05 9.5E-10 70.8 13.1 115 153-292 116-234 (266)
106 KOG0207 Cation transport ATPas 98.1 1.3E-05 2.7E-10 83.6 10.4 93 154-274 722-814 (951)
107 COG1011 Predicted hydrolase (H 98.0 0.00036 7.7E-09 62.4 16.9 101 153-273 97-201 (229)
108 KOG0202 Ca2+ transporting ATPa 98.0 2.8E-05 6.1E-10 80.5 9.9 113 154-280 583-713 (972)
109 TIGR01106 ATPase-IIC_X-K sodiu 97.9 2.7E-05 5.8E-10 84.8 8.7 115 154-277 567-716 (997)
110 PRK10530 pyridoxal phosphate ( 97.9 5.4E-05 1.2E-09 69.8 9.2 48 225-273 196-243 (272)
111 PRK10513 sugar phosphate phosp 97.9 1.5E-05 3.3E-10 73.5 5.4 58 223-281 191-249 (270)
112 COG0474 MgtA Cation transport 97.9 2.7E-05 5.9E-10 84.0 7.7 108 154-272 546-665 (917)
113 PRK10976 putative hydrolase; P 97.9 1.8E-05 4E-10 72.9 5.2 58 223-281 185-243 (266)
114 PRK06769 hypothetical protein; 97.8 8.5E-05 1.8E-09 64.4 8.8 102 154-271 27-137 (173)
115 TIGR01663 PNK-3'Pase polynucle 97.8 0.00011 2.4E-09 74.3 10.8 120 156-296 198-334 (526)
116 TIGR01657 P-ATPase-V P-type AT 97.8 7.3E-05 1.6E-09 82.0 10.0 111 154-273 655-829 (1054)
117 TIGR01494 ATPase_P-type ATPase 97.8 6.1E-05 1.3E-09 76.0 8.7 87 154-271 346-432 (499)
118 PF08282 Hydrolase_3: haloacid 97.8 3.7E-05 8.1E-10 69.0 6.5 58 223-281 181-239 (254)
119 PF08235 LNS2: LNS2 (Lipin/Ned 97.8 0.00015 3.4E-09 61.7 9.7 107 156-267 28-141 (157)
120 PRK15126 thiamin pyrimidine py 97.8 3.3E-05 7.1E-10 71.6 5.8 78 223-303 183-263 (272)
121 smart00577 CPDc catalytic doma 97.8 2.6E-05 5.7E-10 65.9 4.7 94 153-266 43-136 (148)
122 COG0561 Cof Predicted hydrolas 97.7 5.8E-05 1.3E-09 69.6 6.3 58 223-281 184-242 (264)
123 TIGR01664 DNA-3'-Pase DNA 3'-p 97.7 0.0002 4.3E-09 61.8 8.9 94 156-268 43-158 (166)
124 COG2216 KdpB High-affinity K+ 97.7 0.00012 2.6E-09 72.3 7.6 92 155-275 447-539 (681)
125 TIGR01668 YqeG_hyp_ppase HAD s 97.7 0.00032 6.9E-09 60.7 9.6 95 154-273 42-138 (170)
126 PRK03669 mannosyl-3-phosphogly 97.7 5.5E-05 1.2E-09 70.2 5.0 50 223-273 182-234 (271)
127 TIGR01482 SPP-subfamily Sucros 97.6 6.7E-05 1.4E-09 67.1 4.8 56 224-280 145-201 (225)
128 PRK01158 phosphoglycolate phos 97.6 8.2E-05 1.8E-09 66.9 5.1 56 224-280 153-209 (230)
129 COG1778 Low specificity phosph 97.6 0.00021 4.6E-09 60.3 6.7 84 164-273 44-127 (170)
130 PLN02887 hydrolase family prot 97.6 9.1E-05 2E-09 75.8 5.3 57 223-280 502-559 (580)
131 TIGR02463 MPGP_rel mannosyl-3- 97.5 0.00014 2.9E-09 65.2 5.2 46 224-270 175-220 (221)
132 TIGR01681 HAD-SF-IIIC HAD-supe 97.5 0.00041 8.9E-09 57.1 7.5 93 155-262 29-125 (128)
133 TIGR02471 sucr_syn_bact_C sucr 97.5 0.00015 3.2E-09 65.8 5.2 58 224-282 155-213 (236)
134 TIGR01652 ATPase-Plipid phosph 97.5 0.00057 1.2E-08 75.1 10.5 112 154-273 630-796 (1057)
135 TIGR01486 HAD-SF-IIB-MPGP mann 97.5 0.00018 3.9E-09 66.1 5.3 50 225-274 173-223 (256)
136 PHA02530 pseT polynucleotide k 97.4 0.00039 8.5E-09 65.2 7.7 105 154-269 186-293 (300)
137 TIGR00099 Cof-subfamily Cof su 97.4 0.00017 3.7E-09 66.1 4.8 57 223-280 183-240 (256)
138 PLN03190 aminophospholipid tra 97.4 0.0011 2.3E-08 73.4 11.4 46 224-273 854-899 (1178)
139 PF12689 Acid_PPase: Acid Phos 97.4 0.00054 1.2E-08 59.3 7.3 107 151-269 41-148 (169)
140 PF06941 NT5C: 5' nucleotidase 97.4 0.0024 5.2E-08 56.1 11.3 116 153-330 71-186 (191)
141 KOG3085 Predicted hydrolase (H 97.3 0.0088 1.9E-07 54.4 14.8 190 32-273 8-215 (237)
142 PRK00192 mannosyl-3-phosphogly 97.3 0.00045 9.8E-09 64.2 5.7 48 224-273 187-235 (273)
143 TIGR02461 osmo_MPG_phos mannos 97.2 0.00037 8E-09 63.1 4.6 46 226-271 179-225 (225)
144 PLN02382 probable sucrose-phos 97.2 0.00061 1.3E-08 67.3 6.3 58 223-281 170-232 (413)
145 PF11019 DUF2608: Protein of u 97.2 0.0065 1.4E-07 56.0 12.6 111 149-264 75-197 (252)
146 PF05116 S6PP: Sucrose-6F-phos 97.2 0.0014 2.9E-08 60.3 8.0 50 223-273 160-209 (247)
147 TIGR01684 viral_ppase viral ph 97.2 0.0015 3.3E-08 61.0 8.0 43 154-200 144-187 (301)
148 TIGR01485 SPP_plant-cyano sucr 97.1 0.0016 3.4E-08 59.6 7.6 60 224-284 163-224 (249)
149 KOG2914 Predicted haloacid-hal 97.1 0.016 3.4E-07 52.4 13.8 104 153-273 90-197 (222)
150 COG0241 HisB Histidinol phosph 97.1 0.0049 1.1E-07 53.8 10.1 105 154-271 30-149 (181)
151 PF03767 Acid_phosphat_B: HAD 97.1 0.0057 1.2E-07 55.5 10.9 91 155-260 115-207 (229)
152 TIGR01686 FkbH FkbH-like domai 97.1 0.0025 5.5E-08 60.7 8.9 110 156-290 32-148 (320)
153 KOG0204 Calcium transporting A 97.1 0.0015 3.3E-08 68.1 7.5 111 154-273 646-766 (1034)
154 PHA03398 viral phosphatase sup 97.0 0.0024 5.1E-08 59.8 7.8 50 154-207 146-198 (303)
155 PF08645 PNK3P: Polynucleotide 96.9 0.0019 4.2E-08 55.3 6.0 85 156-257 30-130 (159)
156 TIGR01484 HAD-SF-IIB HAD-super 96.9 0.00078 1.7E-08 59.4 3.5 46 224-270 159-204 (204)
157 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.9 0.0089 1.9E-07 54.5 10.4 88 154-265 23-115 (242)
158 PRK14502 bifunctional mannosyl 96.8 0.0016 3.6E-08 67.2 5.2 48 225-273 610-659 (694)
159 KOG3109 Haloacid dehalogenase- 96.8 0.1 2.2E-06 46.7 15.7 113 143-271 82-205 (244)
160 TIGR01675 plant-AP plant acid 96.8 0.027 5.9E-07 51.1 12.4 91 153-260 118-211 (229)
161 PRK10187 trehalose-6-phosphate 96.5 0.0026 5.7E-08 59.0 4.2 49 225-274 171-223 (266)
162 TIGR02251 HIF-SF_euk Dullard-l 96.3 0.003 6.5E-08 54.2 3.1 92 153-266 40-133 (162)
163 PTZ00174 phosphomannomutase; P 96.3 0.0043 9.3E-08 56.8 4.1 54 223-282 183-243 (247)
164 PLN02423 phosphomannomutase 95.8 0.016 3.4E-07 53.2 5.4 55 222-282 183-242 (245)
165 TIGR00685 T6PP trehalose-phosp 95.6 0.038 8.2E-07 50.4 7.2 39 225-264 164-202 (244)
166 KOG0210 P-type ATPase [Inorgan 95.5 0.023 5E-07 58.4 5.6 100 154-273 710-809 (1051)
167 COG4996 Predicted phosphatase 95.4 0.083 1.8E-06 43.5 7.6 44 151-198 37-80 (164)
168 KOG0206 P-type ATPase [General 95.3 0.18 4E-06 55.3 11.9 63 226-292 779-858 (1151)
169 TIGR01680 Veg_Stor_Prot vegeta 95.3 0.3 6.5E-06 45.4 11.7 91 154-259 144-236 (275)
170 COG2503 Predicted secreted aci 95.2 0.17 3.7E-06 46.0 9.6 126 141-291 106-237 (274)
171 COG0561 Cof Predicted hydrolas 94.9 0.49 1.1E-05 43.3 12.3 35 162-200 27-61 (264)
172 PRK03669 mannosyl-3-phosphogly 94.8 0.14 3E-06 47.4 8.4 34 162-199 31-64 (271)
173 KOG0209 P-type ATPase [Inorgan 94.8 0.13 2.8E-06 54.1 8.7 112 153-273 673-834 (1160)
174 PLN02580 trehalose-phosphatase 94.7 0.1 2.2E-06 50.9 7.4 48 225-272 298-352 (384)
175 TIGR02463 MPGP_rel mannosyl-3- 94.2 0.17 3.7E-06 45.1 7.3 34 162-199 23-56 (221)
176 PRK10530 pyridoxal phosphate ( 94.1 0.72 1.6E-05 42.2 11.4 43 162-208 27-69 (272)
177 PRK01158 phosphoglycolate phos 94.1 0.24 5.2E-06 44.2 8.0 41 162-206 27-67 (230)
178 PRK15126 thiamin pyrimidine py 94.0 0.67 1.5E-05 42.7 11.1 43 162-208 26-68 (272)
179 KOG0203 Na+/K+ ATPase, alpha s 94.0 0.12 2.5E-06 54.5 6.4 25 247-271 707-731 (1019)
180 COG3700 AphA Acid phosphatase 93.9 0.28 6.1E-06 42.6 7.5 83 160-266 119-205 (237)
181 PRK00192 mannosyl-3-phosphogly 93.9 0.26 5.7E-06 45.6 8.1 42 162-207 28-69 (273)
182 PF13242 Hydrolase_like: HAD-h 93.7 0.17 3.7E-06 37.2 5.3 42 231-273 8-51 (75)
183 PRK10513 sugar phosphate phosp 93.1 1.3 2.8E-05 40.6 11.3 34 162-199 27-60 (270)
184 PRK10976 putative hydrolase; P 93.0 0.43 9.4E-06 43.7 8.0 34 162-199 26-59 (266)
185 TIGR01484 HAD-SF-IIB HAD-super 93.0 0.36 7.7E-06 42.3 7.2 30 162-195 24-53 (204)
186 COG3769 Predicted hydrolase (H 92.8 0.09 1.9E-06 47.2 2.9 43 229-271 192-235 (274)
187 TIGR02244 HAD-IG-Ncltidse HAD 92.6 0.9 2E-05 43.8 9.7 112 153-272 182-324 (343)
188 PRK14501 putative bifunctional 92.6 0.11 2.4E-06 55.0 3.8 48 224-274 653-703 (726)
189 COG2179 Predicted hydrolase of 92.2 0.82 1.8E-05 39.3 7.8 88 153-266 44-132 (175)
190 TIGR01459 HAD-SF-IIA-hyp4 HAD- 91.8 0.22 4.8E-06 45.2 4.4 39 230-268 198-237 (242)
191 PLN02588 glycerol-3-phosphate 91.7 1.9 4.2E-05 43.5 11.0 126 135-273 107-240 (525)
192 PLN02645 phosphoglycolate phos 91.3 1.2 2.6E-05 42.2 8.9 87 155-266 44-132 (311)
193 PRK14502 bifunctional mannosyl 90.7 1.2 2.6E-05 46.6 8.7 41 163-207 441-481 (694)
194 PTZ00445 p36-lilke protein; Pr 90.6 1.8 3.9E-05 38.8 8.6 111 155-273 75-207 (219)
195 PLN02887 hydrolase family prot 89.7 4.6 9.9E-05 41.8 12.1 33 162-198 332-364 (580)
196 TIGR01485 SPP_plant-cyano sucr 89.5 0.76 1.6E-05 41.8 5.7 15 31-45 1-15 (249)
197 COG5083 SMP2 Uncharacterized p 89.2 0.25 5.4E-06 48.5 2.3 38 16-54 361-398 (580)
198 PF09949 DUF2183: Uncharacteri 88.9 2.1 4.6E-05 33.7 7.0 74 176-258 1-78 (100)
199 TIGR02245 HAD_IIID1 HAD-superf 87.5 3.3 7.2E-05 36.7 8.1 40 154-198 44-83 (195)
200 PF13344 Hydrolase_6: Haloacid 87.0 1.8 3.8E-05 33.9 5.6 42 155-199 14-57 (101)
201 TIGR01458 HAD-SF-IIA-hyp3 HAD- 86.4 0.66 1.4E-05 42.7 3.2 42 229-271 181-224 (257)
202 PLN02205 alpha,alpha-trehalose 86.2 0.72 1.6E-05 49.8 3.9 40 225-265 759-801 (854)
203 KOG2116 Protein involved in pl 86.1 0.42 9.1E-06 49.1 1.9 46 229-274 634-683 (738)
204 COG0647 NagD Predicted sugar p 85.8 11 0.00024 35.1 11.0 86 154-266 23-111 (269)
205 PF03031 NIF: NLI interacting 85.5 0.97 2.1E-05 38.0 3.6 40 153-197 34-73 (159)
206 COG4229 Predicted enolase-phos 84.8 3.4 7.3E-05 36.2 6.5 103 153-273 101-207 (229)
207 KOG0208 Cation transport ATPas 84.1 0.98 2.1E-05 48.6 3.6 43 226-273 838-880 (1140)
208 KOG0205 Plasma membrane H+-tra 83.7 2.3 4.9E-05 44.1 5.7 109 155-273 492-612 (942)
209 TIGR02250 FCP1_euk FCP1-like p 82.7 1.6 3.4E-05 37.2 3.7 42 152-198 55-96 (156)
210 TIGR00685 T6PP trehalose-phosp 81.2 0.92 2E-05 41.3 1.9 15 30-44 2-16 (244)
211 PLN03017 trehalose-phosphatase 79.8 7.6 0.00016 37.8 7.7 47 225-271 280-333 (366)
212 PRK10444 UMP phosphatase; Prov 79.3 3.7 8.1E-05 37.6 5.2 43 228-271 175-219 (248)
213 PLN02423 phosphomannomutase 79.0 1.4 3.1E-05 40.2 2.4 18 29-46 5-22 (245)
214 PF00899 ThiF: ThiF family; I 78.8 33 0.00073 27.8 10.5 113 175-289 3-122 (135)
215 COG2099 CobK Precorrin-6x redu 77.2 4.8 0.0001 37.0 5.1 57 259-329 68-124 (257)
216 PLN02580 trehalose-phosphatase 74.3 1.9 4.2E-05 42.1 2.0 16 29-44 117-132 (384)
217 PRK05690 molybdopterin biosynt 74.3 69 0.0015 29.2 13.0 141 142-289 5-152 (245)
218 COG1877 OtsB Trehalose-6-phosp 73.6 2.1 4.5E-05 39.8 1.9 38 227-265 181-218 (266)
219 PRK10187 trehalose-6-phosphate 73.5 2.2 4.8E-05 39.4 2.1 15 30-44 13-27 (266)
220 TIGR01689 EcbF-BcbF capsule bi 73.3 2.2 4.8E-05 35.1 1.8 47 157-206 26-86 (126)
221 PRK07878 molybdopterin biosynt 73.3 71 0.0015 31.3 12.7 141 142-289 15-162 (392)
222 PRK09484 3-deoxy-D-manno-octul 73.3 1.9 4E-05 37.5 1.4 17 29-45 19-35 (183)
223 TIGR01460 HAD-SF-IIA Haloacid 72.7 5.5 0.00012 36.0 4.5 38 229-267 190-229 (236)
224 TIGR01457 HAD-SF-IIA-hyp2 HAD- 72.7 6.7 0.00015 35.8 5.1 42 229-271 180-223 (249)
225 TIGR00099 Cof-subfamily Cof su 72.0 43 0.00093 30.2 10.3 49 156-208 17-65 (256)
226 PLN02151 trehalose-phosphatase 71.9 2.4 5.3E-05 41.0 2.0 47 225-271 266-319 (354)
227 PLN02645 phosphoglycolate phos 71.3 5.7 0.00012 37.6 4.4 41 229-270 232-274 (311)
228 PLN03017 trehalose-phosphatase 71.3 2.6 5.6E-05 41.0 2.0 16 29-44 109-124 (366)
229 PRK08762 molybdopterin biosynt 70.4 74 0.0016 30.9 12.0 111 175-289 136-255 (376)
230 PF09419 PGP_phosphatase: Mito 70.1 55 0.0012 28.2 9.8 99 155-272 59-165 (168)
231 TIGR01681 HAD-SF-IIIC HAD-supe 69.7 2.7 5.9E-05 34.2 1.6 15 33-47 2-16 (128)
232 PTZ00174 phosphomannomutase; P 68.6 3.3 7.2E-05 37.7 2.1 16 31-46 5-20 (247)
233 PF05116 S6PP: Sucrose-6F-phos 68.3 3.2 6.9E-05 38.0 1.9 14 31-44 2-15 (247)
234 TIGR01452 PGP_euk phosphoglyco 67.8 6.5 0.00014 36.4 3.9 36 231-267 206-242 (279)
235 TIGR02468 sucrsPsyn_pln sucros 66.1 18 0.00039 40.0 7.2 76 187-272 924-1002(1050)
236 PLN02151 trehalose-phosphatase 66.1 7.4 0.00016 37.7 3.9 19 312-330 324-342 (354)
237 TIGR01689 EcbF-BcbF capsule bi 65.6 20 0.00043 29.4 5.9 13 32-44 2-14 (126)
238 COG1458 Predicted DNA-binding 65.1 5.7 0.00012 35.0 2.7 42 251-292 158-201 (221)
239 TIGR02471 sucr_syn_bact_C sucr 64.9 2.9 6.4E-05 37.5 0.9 14 33-46 1-14 (236)
240 TIGR02726 phenyl_P_delta pheny 64.1 3.7 8.1E-05 35.4 1.4 16 30-45 6-21 (169)
241 KOG4549 Magnesium-dependent ph 63.1 28 0.00061 28.7 6.1 44 152-198 41-84 (144)
242 PRK05600 thiamine biosynthesis 62.8 1.5E+02 0.0032 28.9 12.4 142 139-289 11-161 (370)
243 PF02358 Trehalose_PPase: Treh 62.1 7 0.00015 35.1 2.9 40 226-265 163-204 (235)
244 cd01483 E1_enzyme_family Super 61.3 88 0.0019 25.5 9.8 102 186-289 11-119 (143)
245 TIGR01664 DNA-3'-Pase DNA 3'-p 61.3 5.7 0.00012 34.0 2.0 20 27-46 9-28 (166)
246 TIGR01457 HAD-SF-IIA-hyp2 HAD- 60.8 19 0.0004 32.8 5.5 39 158-199 20-60 (249)
247 TIGR01662 HAD-SF-IIIA HAD-supe 60.7 4.7 0.0001 32.5 1.4 12 33-44 2-13 (132)
248 TIGR02461 osmo_MPG_phos mannos 59.7 25 0.00055 31.5 6.1 48 158-209 18-65 (225)
249 PRK06153 hypothetical protein; 56.7 1.4E+02 0.0029 29.5 10.8 133 152-291 159-298 (393)
250 PF10087 DUF2325: Uncharacteri 56.0 85 0.0018 24.0 7.7 61 228-291 10-82 (97)
251 COG1778 Low specificity phosph 55.6 6.8 0.00015 33.5 1.5 16 30-45 7-22 (170)
252 TIGR01670 YrbI-phosphatas 3-de 54.8 6.4 0.00014 33.1 1.2 14 32-45 2-15 (154)
253 PF08282 Hydrolase_3: haloacid 53.6 1E+02 0.0023 26.7 9.1 50 156-209 16-65 (254)
254 TIGR01458 HAD-SF-IIA-hyp3 HAD- 53.5 28 0.00062 31.8 5.4 41 156-199 22-64 (257)
255 PRK15116 sulfur acceptor prote 53.1 1.9E+02 0.0042 26.9 10.8 112 175-290 31-152 (268)
256 PRK10444 UMP phosphatase; Prov 52.9 29 0.00062 31.7 5.3 41 155-198 17-59 (248)
257 TIGR02355 moeB molybdopterin s 52.0 1.6E+02 0.0036 26.6 10.1 113 175-289 25-144 (240)
258 PRK14501 putative bifunctional 51.9 8.3 0.00018 41.0 1.8 17 29-45 490-506 (726)
259 PLN02382 probable sucrose-phos 51.3 10 0.00022 37.5 2.2 17 29-45 7-23 (413)
260 TIGR01486 HAD-SF-IIB-MPGP mann 51.0 41 0.00089 30.4 6.1 46 160-209 21-66 (256)
261 PRK05597 molybdopterin biosynt 50.6 2.4E+02 0.0052 27.2 12.8 112 175-289 29-148 (355)
262 COG4850 Uncharacterized conser 49.9 59 0.0013 31.2 6.8 95 154-260 195-293 (373)
263 cd04724 Tryptophan_synthase_al 49.6 1.9E+02 0.0042 26.1 10.2 104 158-283 116-225 (242)
264 PRK07411 hypothetical protein; 49.2 2.7E+02 0.0058 27.3 13.2 138 142-288 11-157 (390)
265 cd01410 SIRT7 SIRT7: Eukaryoti 48.9 1.9E+02 0.0041 25.6 9.8 46 245-290 131-188 (206)
266 PF05761 5_nucleotid: 5' nucle 48.7 35 0.00077 34.2 5.5 39 154-196 182-220 (448)
267 PLN02205 alpha,alpha-trehalose 47.6 8.1 0.00018 41.9 0.9 29 13-45 582-610 (854)
268 PF03332 PMM: Eukaryotic phosp 47.0 13 0.00029 33.5 2.0 55 224-282 158-217 (220)
269 TIGR02250 FCP1_euk FCP1-like p 46.1 14 0.00031 31.2 2.1 16 29-44 4-19 (156)
270 TIGR01482 SPP-subfamily Sucros 45.6 58 0.0012 28.5 6.0 40 156-199 16-55 (225)
271 PF08745 UPF0278: UPF0278 fami 44.8 12 0.00025 33.3 1.3 42 250-291 150-193 (205)
272 KOG3189 Phosphomannomutase [Li 44.2 15 0.00033 32.7 1.9 55 224-282 189-248 (252)
273 PLN03064 alpha,alpha-trehalose 43.9 13 0.00028 40.6 1.8 40 224-263 764-809 (934)
274 PLN03063 alpha,alpha-trehalose 43.1 14 0.0003 39.9 1.8 42 224-265 674-721 (797)
275 PF02571 CbiJ: Precorrin-6x re 42.7 15 0.00032 33.8 1.7 57 259-329 68-125 (249)
276 cd01491 Ube1_repeat1 Ubiquitin 42.6 2.9E+02 0.0064 25.9 11.6 112 175-290 20-136 (286)
277 PF05152 DUF705: Protein of un 42.3 17 0.00037 34.0 2.0 33 163-199 150-182 (297)
278 TIGR01452 PGP_euk phosphoglyco 41.7 50 0.0011 30.5 5.1 39 157-198 20-60 (279)
279 TIGR03875 RNA_lig_partner RNA 41.7 26 0.00056 31.2 2.9 39 251-289 154-194 (206)
280 PRK08057 cobalt-precorrin-6x r 41.4 18 0.00038 33.3 2.0 71 229-329 53-124 (248)
281 TIGR01658 EYA-cons_domain eyes 41.3 94 0.002 28.7 6.5 46 227-292 213-258 (274)
282 TIGR00213 GmhB_yaeD D,D-heptos 41.3 15 0.00033 31.4 1.5 13 32-44 2-14 (176)
283 PF02358 Trehalose_PPase: Treh 41.1 13 0.00029 33.4 1.1 43 159-207 23-65 (235)
284 PRK04358 hypothetical protein; 41.0 24 0.00051 31.7 2.6 40 251-290 158-199 (217)
285 PRK15174 Vi polysaccharide exp 40.7 1.6E+02 0.0036 30.8 9.3 120 160-292 467-592 (656)
286 PRK12702 mannosyl-3-phosphogly 39.4 82 0.0018 29.9 6.1 44 160-207 23-66 (302)
287 PF03031 NIF: NLI interacting 39.2 18 0.00039 30.1 1.6 15 32-46 1-15 (159)
288 PRK10696 tRNA 2-thiocytidine b 39.1 1.9E+02 0.0041 26.4 8.5 106 175-289 60-199 (258)
289 PF00875 DNA_photolyase: DNA p 38.8 47 0.001 27.9 4.1 44 158-207 53-96 (165)
290 KOG1123 RNA polymerase II tran 38.6 1.4E+02 0.003 30.7 7.7 92 160-282 532-634 (776)
291 PF09419 PGP_phosphatase: Mito 38.4 16 0.00035 31.5 1.2 15 31-45 41-55 (168)
292 PF06014 DUF910: Bacterial pro 38.4 12 0.00027 26.7 0.4 26 233-263 7-32 (62)
293 cd01485 E1-1_like Ubiquitin ac 37.9 2.8E+02 0.006 24.3 11.7 112 175-290 20-144 (198)
294 COG5663 Uncharacterized conser 37.3 12 0.00027 32.3 0.3 18 30-47 5-22 (194)
295 COG0794 GutQ Predicted sugar p 37.1 76 0.0017 28.3 5.2 48 245-292 65-121 (202)
296 smart00577 CPDc catalytic doma 36.8 21 0.00046 29.6 1.7 16 30-45 1-16 (148)
297 TIGR01456 CECR5 HAD-superfamil 36.1 30 0.00065 32.8 2.8 27 246-272 264-292 (321)
298 TIGR01261 hisB_Nterm histidino 35.8 22 0.00049 30.2 1.6 13 32-44 2-14 (161)
299 KOG0323 TFIIF-interacting CTD 35.3 52 0.0011 34.4 4.4 39 153-196 199-237 (635)
300 cd00755 YgdL_like Family of ac 35.0 3.4E+02 0.0074 24.5 10.8 110 175-289 12-132 (231)
301 COG1179 Dinucleotide-utilizing 34.8 1.6E+02 0.0036 27.1 7.0 117 163-291 24-153 (263)
302 TIGR02245 HAD_IIID1 HAD-superf 34.4 27 0.00058 30.9 1.9 17 28-44 18-34 (195)
303 PF14336 DUF4392: Domain of un 33.6 1.4E+02 0.003 28.1 6.7 38 157-197 62-99 (291)
304 COG0678 AHP1 Peroxiredoxin [Po 31.9 1.2E+02 0.0027 25.8 5.3 46 157-205 58-104 (165)
305 cd00757 ThiF_MoeB_HesA_family 31.8 3.7E+02 0.008 23.9 11.6 114 175-290 22-142 (228)
306 TIGR01460 HAD-SF-IIA Haloacid 31.3 1E+02 0.0022 27.6 5.3 41 155-198 14-57 (236)
307 PF04695 Pex14_N: Peroxisomal 31.2 1.1E+02 0.0023 25.3 5.0 36 100-153 11-46 (136)
308 PRK13762 tRNA-modifying enzyme 30.3 1.5E+02 0.0032 28.3 6.4 49 141-192 118-176 (322)
309 TIGR01668 YqeG_hyp_ppase HAD s 30.2 32 0.00069 29.3 1.7 18 30-47 24-41 (170)
310 TIGR02356 adenyl_thiF thiazole 30.1 3.7E+02 0.0081 23.4 10.2 114 175-290 22-142 (202)
311 PRK14851 hypothetical protein; 29.5 7.1E+02 0.015 26.5 11.8 108 175-289 44-165 (679)
312 TIGR02251 HIF-SF_euk Dullard-l 28.6 33 0.00071 29.1 1.5 15 31-45 1-15 (162)
313 cd00296 SIR2 SIR2 superfamily 27.9 4.1E+02 0.0089 23.2 9.0 33 156-192 64-97 (222)
314 TIGR02109 PQQ_syn_pqqE coenzym 27.9 2.1E+02 0.0046 27.2 7.2 43 152-198 62-106 (358)
315 PF03279 Lip_A_acyltrans: Bact 27.2 2.2E+02 0.0048 26.3 7.0 121 161-292 110-239 (295)
316 PRK08223 hypothetical protein; 26.4 5.5E+02 0.012 24.1 11.2 110 175-289 28-149 (287)
317 PTZ00445 p36-lilke protein; Pr 26.3 29 0.00062 31.3 0.7 16 32-47 44-59 (219)
318 cd03769 SR_IS607_transposase_l 26.0 1.6E+02 0.0035 23.9 5.2 40 156-198 47-91 (134)
319 COG1911 RPL30 Ribosomal protei 25.9 1.5E+02 0.0032 23.3 4.4 43 150-196 14-56 (100)
320 PRK05301 pyrroloquinoline quin 25.2 2.7E+02 0.0058 26.8 7.4 43 152-198 71-115 (378)
321 KOG3107 Predicted haloacid deh 25.2 2.4E+02 0.0053 27.7 6.7 46 226-292 407-452 (468)
322 TIGR02765 crypto_DASH cryptoch 24.4 1.2E+02 0.0027 29.8 4.9 39 162-206 65-103 (429)
323 KOG0541 Alkyl hydroperoxide re 23.4 2.2E+02 0.0047 24.5 5.3 40 156-198 63-102 (171)
324 KOG2630 Enolase-phosphatase E- 23.0 4.1E+02 0.0088 24.4 7.3 102 154-273 122-227 (254)
325 cd01489 Uba2_SUMO Ubiquitin ac 22.9 6.6E+02 0.014 23.8 10.0 62 226-290 51-121 (312)
326 TIGR02495 NrdG2 anaerobic ribo 22.8 2.2E+02 0.0048 24.2 5.7 40 152-194 71-110 (191)
327 PF06342 DUF1057: Alpha/beta h 22.6 3E+02 0.0065 26.0 6.7 80 187-273 52-135 (297)
328 COG0796 MurI Glutamate racemas 22.1 1E+02 0.0022 28.8 3.4 28 226-256 14-41 (269)
329 TIGR01456 CECR5 HAD-superfamil 21.8 1.6E+02 0.0036 27.8 5.0 40 156-198 17-63 (321)
330 PF08727 P3A: Poliovirus 3A pr 21.7 57 0.0012 22.9 1.3 14 273-286 29-42 (57)
331 KOG1504 Ornithine carbamoyltra 21.6 2.1E+02 0.0046 26.7 5.3 67 246-326 191-271 (346)
332 PRK07206 hypothetical protein; 21.4 7.5E+02 0.016 23.9 10.6 56 274-329 110-175 (416)
333 COG4483 Uncharacterized protei 20.9 64 0.0014 23.3 1.5 26 233-263 7-32 (68)
334 COG1213 Predicted sugar nucleo 20.9 1.8E+02 0.0039 26.6 4.7 47 162-211 36-82 (239)
335 PRK07475 hypothetical protein; 20.1 1.2E+02 0.0026 27.6 3.5 60 136-199 44-103 (245)
No 1
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.97 E-value=5.3e-30 Score=236.10 Aligned_cols=228 Identities=18% Similarity=0.277 Sum_probs=186.2
Q ss_pred CCceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCccc
Q 020024 29 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 108 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~ 108 (332)
+++++||+|||.|||+.-+ ..++++. |+|++......+++.|.++..+++++|+|+|.++
T Consensus 20 ~~~lqvisDFD~Tlt~~~~--------~~g~~~~------------s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d~ 79 (277)
T TIGR01544 20 AAKLQIISDFDYTLSRFSY--------EDGKRCP------------TCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVDP 79 (277)
T ss_pred hhheEEeeccCccceeeec--------CCCCCCc------------chHhHHhhCCCCCHHHHHHHHHHHhhccceecCC
Confidence 6899999999999997432 2334443 4677888889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhh--cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCH
Q 020024 109 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCG 186 (332)
Q Consensus 109 ~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~--~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~ 186 (332)
.++++++.+||. |||.+++..+.+. +++++++.++++ .+.++||+.+|++.|+++| ++++|+|+|+ .
T Consensus 80 ~~~~~eK~~~m~---eWw~k~~~l~~~~----~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~G---Ipv~IvS~G~-~ 148 (277)
T TIGR01544 80 VLTVEEKYPYMV---EWWTKSHGLLVQQ----AFPKAKIKEIVAESDVMLKDGYENFFDKLQQHS---IPVFIFSAGI-G 148 (277)
T ss_pred CCChHHhhhHHH---HHHHHHHHHHhcC----CCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCC---CcEEEEeCCc-H
Confidence 999999999965 8999999999876 589999999987 8999999999999999999 9999999998 8
Q ss_pred HHHHHHHHhcCC--CcceEEeeeeEEc-CceecccccccCCCCcchHHHHHH-HHHHhC-CCCCceEEEEeCCccchHHh
Q 020024 187 DLIRASFSSAGL--NALNVHANEFSFK-ESISTGEIIEKVESPIDKVQAFNN-TLEKYG-TDRKNLSVYIGDSVGDLLCL 261 (332)
Q Consensus 187 ~~I~~~l~~~g~--~~~~I~aN~l~~~-~g~~tG~~~~~~~~~~~K~~~l~~-~~~~~~-~~~~~~viyiGDs~~Dl~~l 261 (332)
.+|+.+|+++|+ ++.+|+||.|.|+ +|+++| +.++.....+|.+.+.+ .....+ ...+.++|++|||.||++|+
T Consensus 149 ~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG-~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma 227 (277)
T TIGR01544 149 NVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKG-FKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMA 227 (277)
T ss_pred HHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeC-CCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHh
Confidence 999999998887 5679999999995 699999 56677777889876664 333333 12357899999999999997
Q ss_pred hhcC-------eeEEEcCC-hhHHHHhHhcCCeee
Q 020024 262 LEAD-------IGIVIGSS-SSLRRVGSQFGVTFI 288 (332)
Q Consensus 262 ~~Ad-------~gvv~~~~-~~L~~~~~~~~~~~~ 288 (332)
.-.. ||++-..- ..|.+|-..+.+-++
T Consensus 228 ~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~ 262 (277)
T TIGR01544 228 DGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLV 262 (277)
T ss_pred cCCCcccceEEEEecccCHHHHHHHHHHhCCEEEE
Confidence 7652 13322221 467778887776555
No 2
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.8e-28 Score=218.50 Aligned_cols=199 Identities=21% Similarity=0.199 Sum_probs=166.1
Q ss_pred CCceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCccc
Q 020024 29 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 108 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~ 108 (332)
+++.+++||||+|||...+++.+++... .......++...+..
T Consensus 3 ~~~~L~vFD~D~TLi~~~~~~~~~~~~g----------------------~~~~v~~~t~~~~~~--------------- 45 (212)
T COG0560 3 RMKKLAVFDLDGTLINAELIDELARGAG----------------------VGEEVLAITERAMRG--------------- 45 (212)
T ss_pred CccceEEEecccchhhHHHHHHHHHHhC----------------------CHHHHHHHHHHHhcc---------------
Confidence 4678999999999999777777777542 122233333222222
Q ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhhc-CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHH
Q 020024 109 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGER-LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 187 (332)
Q Consensus 109 ~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~~-i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~ 187 (332)
+++|.+.++ .+ ..+++|++.+.+.++.+. +.++||+.+++++|++.| +.++|||+|+ ..
T Consensus 46 ------~~~~~~~~~-------~~---v~~l~g~~~~~v~~~~~~~~~l~~ga~elv~~lk~~G---~~v~iiSgg~-~~ 105 (212)
T COG0560 46 ------ELDFEESLR-------LR---VALLKGLPVEVLEEVREEFLRLTPGAEELVAALKAAG---AKVVIISGGF-TF 105 (212)
T ss_pred ------cccHHHHHH-------HH---HHHhCCCCHHHHHHHHHhcCcCCccHHHHHHHHHHCC---CEEEEEcCCh-HH
Confidence 223333222 22 478899999999999998 999999999999999999 9999999998 78
Q ss_pred HHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 188 LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 188 ~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
+++++.+.+|+ .++++|.++.++|++||...++++.+.+|..+++++....+.. .+++++||||.||+|||..|+.|
T Consensus 106 lv~~ia~~lg~--d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~-~~~~~a~gDs~nDlpml~~ag~~ 182 (212)
T COG0560 106 LVEPIAERLGI--DYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIP-LEETVAYGDSANDLPMLEAAGLP 182 (212)
T ss_pred HHHHHHHHhCC--chheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCC-HHHeEEEcCchhhHHHHHhCCCC
Confidence 99999999887 6899999999989999999999999999999999999988874 46899999999999999999999
Q ss_pred EEEcCChhHHHHhHhcCCee
Q 020024 268 IVIGSSSSLRRVGSQFGVTF 287 (332)
Q Consensus 268 vv~~~~~~L~~~~~~~~~~~ 287 (332)
+++++++.|.+.+...+|+.
T Consensus 183 ia~n~~~~l~~~a~~~~~~~ 202 (212)
T COG0560 183 IAVNPKPKLRALADVRIWPI 202 (212)
T ss_pred eEeCcCHHHHHHHHHhcChh
Confidence 99999999999999999976
No 3
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=190.80 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=149.4
Q ss_pred CceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCcccC
Q 020024 30 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 109 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~ 109 (332)
++..+++|||||||..|+.+.|.... ...+|..+.+..+.+ +
T Consensus 2 kk~vi~sDFDGTITl~Ds~~~itdtf-----------------------~~~e~k~l~~~vls~---------------t 43 (220)
T COG4359 2 KKPVIFSDFDGTITLNDSNDYITDTF-----------------------GPGEWKALKDGVLSK---------------T 43 (220)
T ss_pred CceEEEecCCCceEecchhHHHHhcc-----------------------CchHHHHHHHHHhhC---------------c
Confidence 46799999999999999998877643 345676554433332 2
Q ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHh-hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHH
Q 020024 110 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG-ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL 188 (332)
Q Consensus 110 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~-~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~ 188 (332)
++..+.+..|- .+ -+.+.+++.+.+ +++.|+|||++|++|+++++ +|++|||+|. ..|
T Consensus 44 iS~rd~~g~mf--------------~~---i~~s~~Eile~llk~i~Idp~fKef~e~ike~d---i~fiVvSsGm-~~f 102 (220)
T COG4359 44 ISFRDGFGRMF--------------GS---IHSSLEEILEFLLKDIKIDPGFKEFVEWIKEHD---IPFIVVSSGM-DPF 102 (220)
T ss_pred eeHHHHHHHHH--------------Hh---cCCCHHHHHHHHHhhcccCccHHHHHHHHHHcC---CCEEEEeCCC-chH
Confidence 44444433221 11 134677777775 46999999999999999999 9999999997 899
Q ss_pred HHHHHHhcC----CCcceEEeeeeEEcC-ceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhh
Q 020024 189 IRASFSSAG----LNALNVHANEFSFKE-SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE 263 (332)
Q Consensus 189 I~~~l~~~g----~~~~~I~aN~l~~~~-g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~ 263 (332)
|.++++..+ +..++|++|+..+.. |-..-.......+|.||...++.+.+. +..++|+|||.+|+.+++.
T Consensus 103 I~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI~~l~e~-----~e~~fy~GDsvsDlsaakl 177 (220)
T COG4359 103 IYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVIHELSEP-----NESIFYCGDSVSDLSAAKL 177 (220)
T ss_pred HHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhHHHhhcC-----CceEEEecCCcccccHhhh
Confidence 999998764 344566666666642 321111123467899999999988754 4579999999999999999
Q ss_pred cCeeEEEcCChhHHHHhHhcCCeeeecCc--hhhhhhh
Q 020024 264 ADIGIVIGSSSSLRRVGSQFGVTFIPLYP--GLVKKQK 299 (332)
Q Consensus 264 Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~--~~~~~~~ 299 (332)
+| ++++.+ .|..+|++++++|+||++ .+++.++
T Consensus 178 sD--llFAK~-~L~nyc~eqn~~f~~fe~F~eIlk~ie 212 (220)
T COG4359 178 SD--LLFAKD-DLLNYCREQNLNFLEFETFYEILKEIE 212 (220)
T ss_pred hh--hHhhHH-HHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 99 677755 799999999999999987 4555443
No 4
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.93 E-value=4.4e-25 Score=198.16 Aligned_cols=193 Identities=17% Similarity=0.174 Sum_probs=142.7
Q ss_pred EEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCcccCCCH
Q 020024 33 IIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVENFNY 112 (332)
Q Consensus 33 lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~~~~ 112 (332)
+++||||||||+.||+..+++.. +.+.|..+.+.++++ ++++
T Consensus 1 ~~~fDFDgTit~~d~~~~~~~~~-----------------------~~~~~~~~~~~~~~g---------------~~~~ 42 (214)
T TIGR03333 1 FIICDFDGTITNNDNIISIMKQF-----------------------APPEWEALKDGVLSK---------------TLSI 42 (214)
T ss_pred CEEeccCCCCCcchhHHHHHHHh-----------------------CcHHHHHHHHHHHcC---------------CccH
Confidence 48999999999999988776632 235666555444332 2444
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHh-hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHH
Q 020024 113 ETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG-ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRA 191 (332)
Q Consensus 113 ~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~-~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~ 191 (332)
.+.+..+ ..+++.-..+++.+++ +.++++||+.+++++++++| ++++|+|+|. ..+|+.
T Consensus 43 ~e~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~~~i~~ 102 (214)
T TIGR03333 43 QEGVGRM----------------FGLLPSSLKEEITSFVLETAEIREGFREFVAFINEHG---IPFYVISGGM-DFFVYP 102 (214)
T ss_pred HHHHHHH----------------HhhCCCchHHHHHHHHHhcCcccccHHHHHHHHHHCC---CeEEEECCCc-HHHHHH
Confidence 4444321 1222222345777764 46899999999999999998 9999999996 899999
Q ss_pred HHHhcCCCcceEEeeeeEEcCceecccccc------cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC
Q 020024 192 SFSSAGLNALNVHANEFSFKESISTGEIIE------KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 192 ~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~------~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
+++.++. ...|+||++.++++..++.... ...+|.||..+++++... +.+++|||||.||+++++.||
T Consensus 103 il~~~~~-~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~l~~~~~~-----~~~~i~iGDg~~D~~~a~~Ad 176 (214)
T TIGR03333 103 LLEGIVE-KDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSLIRKLSEP-----NDYHIVIGDSVTDVEAAKQSD 176 (214)
T ss_pred HHHhhCC-cccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHhCC
Confidence 9987643 3689999999987655543321 123488999999987642 357999999999999999999
Q ss_pred eeEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 266 IGIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 266 ~gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
+ +++.+ .|..+|++++.++.||..
T Consensus 177 ~--~~ar~-~l~~~~~~~~~~~~~~~~ 200 (214)
T TIGR03333 177 L--CFARD-YLLNECEELGLNHAPFQD 200 (214)
T ss_pred e--eEehH-HHHHHHHHcCCCccCcCC
Confidence 5 55555 688999999999999976
No 5
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.93 E-value=1.3e-24 Score=195.74 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=142.0
Q ss_pred ceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCcccCC
Q 020024 31 RLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVENF 110 (332)
Q Consensus 31 ~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~~ 110 (332)
+.+++||||||||+.|+...+++-. ..+.|..+.+.|+++. +
T Consensus 3 ~~~vifDfDgTi~~~d~~~~~~~~~-----------------------~~~~~~~i~~~~~~g~---------------~ 44 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNIIAIMKKF-----------------------APPEWEELKDDILSQE---------------L 44 (219)
T ss_pred CcEEEEcCCCCCCcchhhHHHHHHh-----------------------CHHHHHHHHHHHHhCC---------------c
Confidence 5599999999999999976544321 1245666655554432 3
Q ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHh-hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHH
Q 020024 111 NYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG-ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLI 189 (332)
Q Consensus 111 ~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~-~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I 189 (332)
++.+....+ ...+.+-..+++.+.. +.+.++||+.+++++++++| ++++|+|+|+ ..+|
T Consensus 45 ~~~~~~~~~----------------~~~l~~~~~~~~~~~~~~~~~l~pG~~e~l~~l~~~g---~~~~IvS~~~-~~~i 104 (219)
T PRK09552 45 SIQEGVGQM----------------FQLLPSNLKEEIIQFLLETAEIREGFHEFVQFVKENN---IPFYVVSGGM-DFFV 104 (219)
T ss_pred CHHHHHHHH----------------HHhCCCCchHHHHHHHHhCCCcCcCHHHHHHHHHHcC---CeEEEECCCc-HHHH
Confidence 333333321 1224444457777764 57899999999999999999 9999999998 8999
Q ss_pred HHHHHhcCCCcceEEeeeeEEcCceecccccccC------CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhh
Q 020024 190 RASFSSAGLNALNVHANEFSFKESISTGEIIEKV------ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE 263 (332)
Q Consensus 190 ~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~------~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~ 263 (332)
+++++.+ +....++||.+.++++..+.....+. .++.+|..+++++... ..++||||||.+|+++++.
T Consensus 105 ~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~~~~-----~~~~i~iGDs~~Di~aa~~ 178 (219)
T PRK09552 105 YPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKLSDT-----NDFHIVIGDSITDLEAAKQ 178 (219)
T ss_pred HHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHhccC-----CCCEEEEeCCHHHHHHHHH
Confidence 9999987 65567999999987654443221111 2467899888876432 3589999999999999999
Q ss_pred cCeeEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 264 ADIGIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 264 Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
||+ +++.+ .|.++|++++|+++||++
T Consensus 179 Ag~--~~a~~-~l~~~~~~~~~~~~~~~~ 204 (219)
T PRK09552 179 ADK--VFARD-FLITKCEELGIPYTPFET 204 (219)
T ss_pred CCc--ceeHH-HHHHHHHHcCCCccccCC
Confidence 996 44433 788999999999999976
No 6
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.93 E-value=9.7e-25 Score=206.96 Aligned_cols=194 Identities=19% Similarity=0.198 Sum_probs=156.5
Q ss_pred CCceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCccc
Q 020024 29 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVE 108 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~ 108 (332)
+.+.+++|||||||+..++++.+++.. + ....+..+++.++.+
T Consensus 108 ~~~~LvvfDmDGTLI~~e~i~eia~~~--g--------------------~~~~v~~it~~~m~G--------------- 150 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQIECIDEIAKLA--G--------------------TGEEVAEVTERAMRG--------------- 150 (322)
T ss_pred cCCCEEEEECCCCCcchHHHHHHHHHh--C--------------------CchHHHHHHHHHHcC---------------
Confidence 466899999999999999999988854 1 234444444433322
Q ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHH
Q 020024 109 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL 188 (332)
Q Consensus 109 ~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~ 188 (332)
+++|.++++ .++ ..++|.+.+.+.+..+.++++||+.++++.|+++| +++.|+|+|+ ..+
T Consensus 151 ------eldf~esl~-------~rv---~~l~g~~~~il~~v~~~l~l~pGa~elL~~Lk~~G---~~~aIvSgg~-~~~ 210 (322)
T PRK11133 151 ------ELDFEASLR-------QRV---ATLKGADANILQQVRENLPLMPGLTELVLKLQALG---WKVAIASGGF-TYF 210 (322)
T ss_pred ------CcCHHHHHH-------HHH---HHhCCCCHHHHHHHHHhCCCChhHHHHHHHHHHcC---CEEEEEECCc-chh
Confidence 223333222 233 45688887778777788999999999999999999 9999999998 778
Q ss_pred HHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeE
Q 020024 189 IRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 268 (332)
Q Consensus 189 I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gv 268 (332)
++..++++|+ .++++|.+++.+|..||.+.+.+..+.+|...++++..+.+.. ..++++||||.||++|++.||+||
T Consensus 211 ~~~l~~~Lgl--d~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~-~~qtIaVGDg~NDl~m~~~AGlgi 287 (322)
T PRK11133 211 ADYLRDKLRL--DAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIP-LAQTVAIGDGANDLPMIKAAGLGI 287 (322)
T ss_pred HHHHHHHcCC--CeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCC-hhhEEEEECCHHHHHHHHHCCCeE
Confidence 8888888777 6889999999999999988877777889999999999888863 578999999999999999999999
Q ss_pred EEcCChhHHHHhHh
Q 020024 269 VIGSSSSLRRVGSQ 282 (332)
Q Consensus 269 v~~~~~~L~~~~~~ 282 (332)
++++++.+++.|..
T Consensus 288 A~nAkp~Vk~~Ad~ 301 (322)
T PRK11133 288 AYHAKPKVNEQAQV 301 (322)
T ss_pred EeCCCHHHHhhCCE
Confidence 99999988776643
No 7
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.92 E-value=1.2e-23 Score=188.49 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=109.9
Q ss_pred hhhcCCCCHHHHHHHhh--------cCCCChhHHHHHH-HHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC-CcceEEe
Q 020024 136 SGVLKGINLEDIKKAGE--------RLSLQDGCTTFFQ-KVVKNENLNANVHVLSYCWCGDLIRASFSSAGL-NALNVHA 205 (332)
Q Consensus 136 ~~~f~G~~~~~l~~~~~--------~i~lrpg~~e~l~-~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~-~~~~I~a 205 (332)
..+|+|++.+++.+..+ ...++||+.+.++ .++++| ++++|||++. ..+++++++..++ ...+++|
T Consensus 67 ~~~~~g~~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G---~~v~IvSas~-~~~~~~ia~~~~~~~~~~~i~ 142 (210)
T TIGR01545 67 WACTFGHREAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSD---ADIWLITGSP-QPLVEAVYFDSNFIHRLNLIA 142 (210)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCC---CEEEEEcCCc-HHHHHHHHHhccccccCcEEE
Confidence 46788999988876543 2368999999997 556678 9999999986 7888888876443 3468999
Q ss_pred eeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHH
Q 020024 206 NEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRV 279 (332)
Q Consensus 206 N~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~ 279 (332)
+++++.+| |.+.+++|.|.+|++++++++.. .....++||||.+|+|||..||.+++++|++.|.++
T Consensus 143 t~le~~~g---g~~~g~~c~g~~Kv~rl~~~~~~----~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~~L~~~ 209 (210)
T TIGR01545 143 SQIERGNG---GWVLPLRCLGHEKVAQLEQKIGS----PLKLYSGYSDSKQDNPLLAFCEHRWRVSKRGELQQL 209 (210)
T ss_pred EEeEEeCC---ceEcCccCCChHHHHHHHHHhCC----ChhheEEecCCcccHHHHHhCCCcEEECcchHhccc
Confidence 99998665 66778899999999999999842 235678999999999999999999999999988754
No 8
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.91 E-value=3.2e-23 Score=187.28 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHhhcCCCChhHHHHHHHHHH--cCCCCCcEEEEccccCHHHHHHHHHhcCCCcc--eEEeeeeEEcC-ce
Q 020024 140 KGINLEDIKKAGERLSLQDGCTTFFQKVVK--NENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKE-SI 214 (332)
Q Consensus 140 ~G~~~~~l~~~~~~i~lrpg~~e~l~~l~~--~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~-g~ 214 (332)
.|++.+++.+..+.+++.||+.++++.+.+ .| .+++|||++. ..||+.+|+.+|+... +|++|...|++ |.
T Consensus 56 ~gvt~~~I~~~l~~ip~~pgm~~~l~~l~~~~~~---~~~~IiSDaN-s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~ 131 (234)
T PF06888_consen 56 QGVTPEDIRDALRSIPIDPGMKELLRFLAKNQRG---FDLIIISDAN-SFFIETILEHHGLRDCFSEIFTNPACFDADGR 131 (234)
T ss_pred cCCCHHHHHHHHHcCCCCccHHHHHHHHHhcCCC---ceEEEEeCCc-HhHHHHHHHhCCCccccceEEeCCceecCCce
Confidence 379999999999999999999999999954 45 9999999996 8999999999998643 89999999975 64
Q ss_pred ec-cccc---c-cCCCCcchHHHHHHHHHHhCC--CCCceEEEEeCCccchHHhhh---cCeeEEEcCC-hhHHHHhHh
Q 020024 215 ST-GEII---E-KVESPIDKVQAFNNTLEKYGT--DRKNLSVYIGDSVGDLLCLLE---ADIGIVIGSS-SSLRRVGSQ 282 (332)
Q Consensus 215 ~t-G~~~---~-~~~~~~~K~~~l~~~~~~~~~--~~~~~viyiGDs~~Dl~~l~~---Ad~gvv~~~~-~~L~~~~~~ 282 (332)
+. .++. + .+..++||..+|++++..... ..++++||||||.||+|+++. +| +|+... =.|.+...+
T Consensus 132 l~v~pyh~h~C~~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D--~v~~R~~~~l~~~i~~ 208 (234)
T PF06888_consen 132 LRVRPYHSHGCSLCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRD--VVFPRKGYPLHKLIQK 208 (234)
T ss_pred EEEeCccCCCCCcCCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCC--EEecCCCChHHHHHhc
Confidence 32 1222 2 244558999999999976411 136899999999999999985 67 566544 234444433
No 9
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.90 E-value=8.7e-23 Score=180.82 Aligned_cols=134 Identities=21% Similarity=0.169 Sum_probs=117.0
Q ss_pred hhhcCCCCHHHHHHHhhc-------CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeee
Q 020024 136 SGVLKGINLEDIKKAGER-------LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 208 (332)
Q Consensus 136 ~~~f~G~~~~~l~~~~~~-------i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 208 (332)
...|+|++.+++.++++. ..++||+.++++.++++| .+++|+|++. ..+++.+++.+|+ .+++++++
T Consensus 61 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g---~~v~ivS~s~-~~~v~~~~~~lg~--~~~~~~~l 134 (202)
T TIGR01490 61 LDALAGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEG---HTIVLVSASL-TILVKPLARILGI--DNAIGTRL 134 (202)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHcCC--cceEecce
Confidence 457899999999887653 469999999999999999 9999999997 8899999998887 46899999
Q ss_pred EE-cCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhH
Q 020024 209 SF-KESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276 (332)
Q Consensus 209 ~~-~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L 276 (332)
.+ ++|.+||++.++.+.+..|...+++++.+.+.+ .+++++||||.+|++|+..|+.++++++++.|
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~~~-~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~~l 202 (202)
T TIGR01490 135 EESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQID-LKDSYAYGDSISDLPLLSLVGHPYVVNPDKKL 202 (202)
T ss_pred EEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcCCC-HHHcEeeeCCcccHHHHHhCCCcEEeCCCCCC
Confidence 98 678999998877888999999999999876652 46899999999999999999999999988643
No 10
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=99.90 E-value=1.6e-23 Score=188.87 Aligned_cols=200 Identities=22% Similarity=0.381 Sum_probs=146.2
Q ss_pred ccccccchhhhhHHHHHHHHHHHHhhcCCCCcccCCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhh--
Q 020024 75 SSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE-- 152 (332)
Q Consensus 75 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~-- 152 (332)
++|++......+++.|.++..+++++|+|+|.++.++++++.++|+ |||+++|..+++. +++++++.++++
T Consensus 15 sshgil~~~~~~~~~~~~k~~~L~~kY~PIE~dp~~s~eEK~p~M~---EWw~kah~llv~~----~l~k~~i~~~V~~s 87 (246)
T PF05822_consen 15 SSHGILENSKLLPEEYRKKLKELFEKYYPIEIDPTMSIEEKIPHME---EWWTKAHELLVEQ----GLTKSEIEEAVKES 87 (246)
T ss_dssp -HHHHHHTSTTS-HHHHHHHHHHHHHHHHHHT-SSS-HHHHHHHHH---HHHHHHHHHHHHH----T-BGGGHHHHHHCS
T ss_pred ChHHHHhcCCcCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHH---HHHHHHHHHHHhc----CcCHHHHHHHHHhc
Confidence 4677888888899999999999999999999999999999999864 8999999999987 699999999987
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC--CcceEEeeeeEEcC-ceecccccccCCCCcch
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL--NALNVHANEFSFKE-SISTGEIIEKVESPIDK 229 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~--~~~~I~aN~l~~~~-g~~tG~~~~~~~~~~~K 229 (332)
.+.||+|+.+|++.|++++ +|+.|+|||. +++|+.+|++.|. ++++|+||.+.|++ |+..| |.+++....+|
T Consensus 88 ~i~LRdg~~~~f~~L~~~~---IP~lIFSAGl-gdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~g-F~~~lIH~~NK 162 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHN---IPLLIFSAGL-GDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVG-FKGPLIHTFNK 162 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT-----EEEEEEEE-HHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEE-E-SS---TT-H
T ss_pred chhhhcCHHHHHHHHHhcC---CCEEEEeCCc-HHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEee-cCCCceEEeeC
Confidence 5899999999999999988 9999999999 9999999998874 68899999999965 88877 55666666778
Q ss_pred HH-HHH--HHHHHhCCCCCceEEEEeCCccchHHhhhc-Ce------eEEEcCC-hhHHHHhHhcCCeee
Q 020024 230 VQ-AFN--NTLEKYGTDRKNLSVYIGDSVGDLLCLLEA-DI------GIVIGSS-SSLRRVGSQFGVTFI 288 (332)
Q Consensus 230 ~~-~l~--~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A-d~------gvv~~~~-~~L~~~~~~~~~~~~ 288 (332)
.. +++ .+... ...+.+++..|||.+|+.|..-+ +. |++-..- ..|.+|.+.+.+-++
T Consensus 163 n~~~l~~~~~~~~--~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv 230 (246)
T PF05822_consen 163 NESALEDSPYFKQ--LKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLV 230 (246)
T ss_dssp HHHHHTTHHHHHC--TTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEE
T ss_pred CcccccCchHHHH--hccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEE
Confidence 65 331 12222 22357999999999999998776 32 4332222 368888887776554
No 11
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.90 E-value=6.4e-23 Score=177.55 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=102.6
Q ss_pred hhcCCCCHHHHHH-H-hhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEc-Cc
Q 020024 137 GVLKGINLEDIKK-A-GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFK-ES 213 (332)
Q Consensus 137 ~~f~G~~~~~l~~-~-~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~-~g 213 (332)
..+++...+++.+ + .+.+.++||+.++++.++++| ++++|+|++. ..+|+.+++.+|+ .++++|.+.++ +|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~ivS~~~-~~~i~~~~~~~g~--~~~~~~~~~~~~~g 126 (177)
T TIGR01488 53 ALLHRSRSEEVAKEFLARQVALRPGARELISWLKERG---IDTVIVSGGF-DFFVEPVAEKLGI--DDVFANRLEFDDNG 126 (177)
T ss_pred HHhCCCCHHHHHHHHHHhcCCcCcCHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCC--chheeeeEEECCCC
Confidence 5567777666665 5 457889999999999999999 9999999997 8999999999887 47999999995 68
Q ss_pred eecccccc-cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhc
Q 020024 214 ISTGEIIE-KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 264 (332)
Q Consensus 214 ~~tG~~~~-~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A 264 (332)
.++|++.+ +++.+.+|...++++....+.. +.+++|||||.||++|++.|
T Consensus 127 ~~~g~~~~~~~~~~~~K~~~l~~~~~~~~~~-~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 127 LLTGPIEGQVNPEGECKGKVLKELLEESKIT-LKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred EEeCccCCcccCCcchHHHHHHHHHHHhCCC-HHHEEEEeCCHHHHHHHhcC
Confidence 88987765 5678899999999998876553 46899999999999999865
No 12
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.89 E-value=4.6e-22 Score=178.45 Aligned_cols=138 Identities=22% Similarity=0.304 Sum_probs=118.4
Q ss_pred hhcCCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceec
Q 020024 137 GVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESIST 216 (332)
Q Consensus 137 ~~f~G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~t 216 (332)
..|.+.+.+.+.+..+.++++||+.++++.++++| ++++|+|+|+ ..+++.+++.+|+ .++++|.+.++++.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~~i--~~~~~~~~~~~~~~~~ 140 (219)
T TIGR00338 67 ALLKGLPVELLKEVRENLPLTEGAEELVKTLKEKG---YKVAVISGGF-DLFAEHVKDKLGL--DAAFANRLEVEDGKLT 140 (219)
T ss_pred HHhCCCCHHHHHHHHhcCCcCCCHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCC--CceEeeEEEEECCEEE
Confidence 34567788888888888999999999999999998 9999999997 8999999998887 4689999999988888
Q ss_pred ccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhH
Q 020024 217 GEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGS 281 (332)
Q Consensus 217 G~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~ 281 (332)
|...++...+.+|...++.++.+.+.. ..+++|||||.+|++++..|++++++++++.|.+.+.
T Consensus 141 ~~~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~~~~~~a~ 204 (219)
T TIGR00338 141 GLVEGPIVDASYKGKTLLILLRKEGIS-PENTVAVGDGANDLSMIKAAGLGIAFNAKPKLQQKAD 204 (219)
T ss_pred EEecCcccCCcccHHHHHHHHHHcCCC-HHHEEEEECCHHHHHHHHhCCCeEEeCCCHHHHHhch
Confidence 877666566667999999888877663 4689999999999999999999999998887776554
No 13
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.89 E-value=2.4e-22 Score=179.14 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcC-ceeccc
Q 020024 140 KGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SISTGE 218 (332)
Q Consensus 140 ~G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG~ 218 (332)
.|++.+++.+..+.++++||+.+++++++++ .+++|||+|+ ..+++++++.+|+ .+++||++++++ |.+||.
T Consensus 53 ~g~~~~~i~~~~~~i~l~pga~ell~~lk~~----~~~~IVS~~~-~~~~~~il~~lgi--~~~~an~l~~~~~g~~tG~ 125 (203)
T TIGR02137 53 HGLKLGDIQEVIATLKPLEGAVEFVDWLRER----FQVVILSDTF-YEFSQPLMRQLGF--PTLLCHKLEIDDSDRVVGY 125 (203)
T ss_pred CCCCHHHHHHHHHhCCCCccHHHHHHHHHhC----CeEEEEeCCh-HHHHHHHHHHcCC--chhhceeeEEecCCeeECe
Confidence 3999999999999999999999999999984 4999999998 8999999999887 479999999988 888886
Q ss_pred ccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHh
Q 020024 219 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQ 282 (332)
Q Consensus 219 ~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~ 282 (332)
.. ..+.+|..+++.+. ..+ .++++||||.||++|++.||+||++++++.+++.|.+
T Consensus 126 ~~---~~~~~K~~~l~~l~-~~~----~~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~~~~~ 181 (203)
T TIGR02137 126 QL---RQKDPKRQSVIAFK-SLY----YRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQ 181 (203)
T ss_pred ee---cCcchHHHHHHHHH-hhC----CCEEEEeCCHHHHHHHHhCCCCEEecCCHHHHHhCCC
Confidence 43 44668999999884 332 4799999999999999999999999999999888866
No 14
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.7e-23 Score=185.73 Aligned_cols=228 Identities=17% Similarity=0.267 Sum_probs=171.9
Q ss_pred CCCceEEEEeCCCCcccccchHHHHHHHHH-hCCCCCCCCCcccccccccccccc-hhhhhHHHHHHHHHHHHhhcCCCC
Q 020024 28 AGDRLIIFSDFDLTCTIVDSSAILAEIAIV-TAPKSDQNQPENQLGRMSSGELRN-TWGLLSKQYTEEYEQCIESFMPSE 105 (332)
Q Consensus 28 ~~~~~lvi~DFD~TiT~~Dt~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~p~~ 105 (332)
.+.++.+|+|||.|||+ +++. ++++++ ++...+ ....+.+.|.++..+++.+|+|+|
T Consensus 35 ga~~~~vIsdfd~TLSr---------fa~~~G~r~pS------------~~~Vfd~~~~~~~~e~~~k~~~LyhkY~PIE 93 (298)
T KOG3128|consen 35 GAGKLQVISDFDYTLSR---------FATEQGKRCPS------------CFGVFDDNVKRLKPECRAKFVALYHKYYPIE 93 (298)
T ss_pred CccceeEeecCchhHHH---------HHHhhcCcCCc------------cccchhhhhhcCCHHHHHHHHHHHhhccCcc
Confidence 36889999999999996 5554 555653 455666 788889999999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhh--cCCCChhHHHHHHHHHHcCCCCCcEEEEccc
Q 020024 106 KVENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYC 183 (332)
Q Consensus 106 ~~~~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~--~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g 183 (332)
.++.++++++.+||+ |||.+||..+++. |++++++++.+. .+.+|+|..+|+..|++++ +|+.|.|+|
T Consensus 94 idP~ltieEKvp~Me---eWW~kSH~Lliq~----~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~---IP~~iFSAG 163 (298)
T KOG3128|consen 94 IDPVLTIEEKVPHME---EWWTKSHELLIQG----GFSKNAIDDIVAESNIALREGYEEFFEALQAHE---IPLLIFSAG 163 (298)
T ss_pred cCCCCChhhhchHHH---HHHhcccceeecC----CcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC---CceEEEecc
Confidence 999999999999975 8999999999875 799999999976 5899999999999999999 999999999
Q ss_pred cCHHHHHHHHHhcC-C-CcceEEeeeeEEc-CceecccccccCCCCcchH-HHHHHHHHHhC-CCCCceEEEEeCCccch
Q 020024 184 WCGDLIRASFSSAG-L-NALNVHANEFSFK-ESISTGEIIEKVESPIDKV-QAFNNTLEKYG-TDRKNLSVYIGDSVGDL 258 (332)
Q Consensus 184 ~s~~~I~~~l~~~g-~-~~~~I~aN~l~~~-~g~~tG~~~~~~~~~~~K~-~~l~~~~~~~~-~~~~~~viyiGDs~~Dl 258 (332)
+ .+.|+.++++.. + ++.++.||-+.|+ +|...| |..++....+|. ..++.....+. ...+.++|+.|||.+|+
T Consensus 164 i-gdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~g-F~~~Lihtfnkn~~v~~~~s~yf~~~~~~~nVillGdsigdl 241 (298)
T KOG3128|consen 164 I-GDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCG-FSQPLIHTFNKNSSVLQNESEYFHQLAGRVNVILLGDSIGDL 241 (298)
T ss_pred h-HHHHHHHHHHHhccCccHHhhhhhhhhcccchhhh-hhHHHHHHHccchHHHHhhhHHHhhccCCceEEEeccccccc
Confidence 9 999999997643 2 6789999999998 455443 333333333343 22222111111 11357999999999999
Q ss_pred HHhhhcC-eeEE----EcCC---hhHHHHhHhcCCeee
Q 020024 259 LCLLEAD-IGIV----IGSS---SSLRRVGSQFGVTFI 288 (332)
Q Consensus 259 ~~l~~Ad-~gvv----~~~~---~~L~~~~~~~~~~~~ 288 (332)
.|...+- .+-. +..+ ..+.+|-..+++-.+
T Consensus 242 ~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~ 279 (298)
T KOG3128|consen 242 HMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLV 279 (298)
T ss_pred hhhcCCcccccceeeecccchHHHHHHHHHhhcceEEe
Confidence 9988753 2211 2222 366777777776444
No 15
>PRK11590 hypothetical protein; Provisional
Probab=99.88 E-value=2.3e-21 Score=173.72 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=107.1
Q ss_pred cCCCCHHHHHHHhh--------cCCCChhHHHHHH-HHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC-CcceEEeeee
Q 020024 139 LKGINLEDIKKAGE--------RLSLQDGCTTFFQ-KVVKNENLNANVHVLSYCWCGDLIRASFSSAGL-NALNVHANEF 208 (332)
Q Consensus 139 f~G~~~~~l~~~~~--------~i~lrpg~~e~l~-~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~-~~~~I~aN~l 208 (332)
+.|++.+++.+..+ .+.++||+.++++ .++++| ++++|+|++. ..+++++++.+|+ ...+++|+++
T Consensus 71 ~~g~~~~~~~~~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G---~~l~IvSas~-~~~~~~il~~l~~~~~~~~i~t~l 146 (211)
T PRK11590 71 TFGHSEARLQALEADFVRWFRDNVTAFPVVQERLTTYLLSSD---ADVWLITGSP-QPLVEQVYFDTPWLPRVNLIASQM 146 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhCcCCccHHHHHHHHHHhCC---CEEEEEeCCc-HHHHHHHHHHccccccCceEEEEE
Confidence 34677766654432 2577999999995 566678 9999999996 8889999988773 2368999999
Q ss_pred EEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHH
Q 020024 209 SFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRV 279 (332)
Q Consensus 209 ~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~ 279 (332)
++ .+||++.+++|.|.+|++++++++.. .....++||||.+|+|||..|+.+++++|++.|.++
T Consensus 147 ~~---~~tg~~~g~~c~g~~K~~~l~~~~~~----~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~~l~~~ 210 (211)
T PRK11590 147 QR---RYGGWVLTLRCLGHEKVAQLERKIGT----PLRLYSGYSDSKQDNPLLYFCQHRWRVTPRGELQQL 210 (211)
T ss_pred EE---EEccEECCccCCChHHHHHHHHHhCC----CcceEEEecCCcccHHHHHhCCCCEEECccHHhhcc
Confidence 87 68899999999999999999999842 235778999999999999999999999999988764
No 16
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.88 E-value=1.8e-22 Score=173.03 Aligned_cols=176 Identities=19% Similarity=0.192 Sum_probs=143.7
Q ss_pred CceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCcccC
Q 020024 30 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 109 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~ 109 (332)
..-+++||+|+|++..+.|+.|+.+.... .+-.+++ +
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~G~~----------------------~~Va~~T---------------------~ 51 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYCGVG----------------------EAVAEVT---------------------R 51 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHhCch----------------------HHHHHHH---------------------H
Confidence 45699999999999999999999986321 1111122 2
Q ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHh--hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHH
Q 020024 110 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAG--ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 187 (332)
Q Consensus 110 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~--~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~ 187 (332)
..|.+.++|.++|+ .|+ .++++ +..++.+.. +.+.+.||+++|+..|+++| ..++++|+|| ..
T Consensus 52 rAMng~~~F~eaL~-------~Rl---~llqp-~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~---~~v~liSGGF-~~ 116 (227)
T KOG1615|consen 52 RAMNGEADFQEALA-------ARL---SLLQP-LQVQVEQFVIKQKPTLTPGIRELVSRLHARG---TQVYLISGGF-RQ 116 (227)
T ss_pred HHhCCCCcHHHHHH-------HHH---HHhcc-cHHHHHHHHhcCCCccCCCHHHHHHHHHHcC---CeEEEEcCCh-HH
Confidence 66888889988887 444 78888 455555553 37899999999999999999 9999999999 99
Q ss_pred HHHHHHHhcCCCcceEEeeeeEEcC-ceecc-cccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC
Q 020024 188 LIRASFSSAGLNALNVHANEFSFKE-SISTG-EIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 188 ~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG-~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
+|.++...+|++...|+||.|.|+. |.++| ...++...+.+|..++.++++.++ +..+++||||.||++++.-|+
T Consensus 117 ~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~~---~~~~~mvGDGatDlea~~pa~ 193 (227)
T KOG1615|consen 117 LIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNYN---YKTIVMVGDGATDLEAMPPAD 193 (227)
T ss_pred HHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCCC---hheeEEecCCccccccCCchh
Confidence 9999999999987789999999974 88887 556778888899999998887443 478999999999999999877
Q ss_pred e
Q 020024 266 I 266 (332)
Q Consensus 266 ~ 266 (332)
.
T Consensus 194 a 194 (227)
T KOG1615|consen 194 A 194 (227)
T ss_pred h
Confidence 4
No 17
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.87 E-value=6.3e-21 Score=168.19 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=109.6
Q ss_pred CCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcC-ceecccc
Q 020024 141 GINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SISTGEI 219 (332)
Q Consensus 141 G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG~~ 219 (332)
....+++.+..+.+.++||+.+++++|+++| ++++|+|+++ ..+++.+++.+|+ .++++|.+.+++ |..+|..
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~e~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~g~--~~~~~~~~~~~~~g~~~p~~ 139 (201)
T TIGR01491 66 RLRREEVEEIFKEISLRDYAEELVRWLKEKG---LKTAIVSGGI-MCLAKKVAEKLNP--DYVYSNELVFDEKGFIQPDG 139 (201)
T ss_pred CCCHHHHHHHHHhCCCCccHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHhCC--CeEEEEEEEEcCCCeEecce
Confidence 3467778888888999999999999999999 9999999997 8999999999887 478899988864 6655532
Q ss_pred cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHh
Q 020024 220 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQ 282 (332)
Q Consensus 220 ~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~ 282 (332)
. ......+|...++++++..+.+ ..+++|||||.+|+++++.||+++++++++.|+++|+.
T Consensus 140 ~-~~~~~~~k~~~~~~~~~~~~~~-~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 140 I-VRVTFDNKGEAVERLKRELNPS-LTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred e-eEEccccHHHHHHHHHHHhCCC-HHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 1 1122346888888888776653 46899999999999999999999999999888888753
No 18
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.83 E-value=2.4e-19 Score=156.33 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=100.5
Q ss_pred CCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcC-ceecc
Q 020024 141 GINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKE-SISTG 217 (332)
Q Consensus 141 G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~-g~~tG 217 (332)
+++.+++.+...+++++||+.++++.++++| ++++|+|++. ..+++.+++.+|+.. ..|++|+..+++ |.+++
T Consensus 58 ~~~~~~~~~~~~~~~l~~g~~~ll~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~ 133 (188)
T TIGR01489 58 GLKEDEILEVLKSAPIDPGFKEFIAFIKEHG---IDFIVISDGN-DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIV 133 (188)
T ss_pred CCCHHHHHHHHHhCCCCccHHHHHHHHHHcC---CcEEEEeCCc-HHHHHHHHHHcCChhheeEEeccCceECCCCcEEE
Confidence 5778888888888999999999999999988 9999999985 889999998888753 379999999975 66665
Q ss_pred cccc-----cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcC
Q 020024 218 EIIE-----KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 272 (332)
Q Consensus 218 ~~~~-----~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~ 272 (332)
.... +...+.+|...+++++..+ +.+++|||||.+|+++++.|| ++++.
T Consensus 134 ~~~~~~~~~~~~~g~~K~~~~~~~~~~~----~~~~i~iGD~~~D~~aa~~~d--~~~ar 187 (188)
T TIGR01489 134 WPHHCHGCCSCPCGCCKGKVIHKLSEPK----YQHIIYIGDGVTDVCPAKLSD--VVFAK 187 (188)
T ss_pred ecCCCCccCcCCCCCCHHHHHHHHHhhc----CceEEEECCCcchhchHhcCC--ccccC
Confidence 4332 3456778999999887643 368999999999999999998 56653
No 19
>PLN02954 phosphoserine phosphatase
Probab=99.83 E-value=2.2e-19 Score=161.64 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=127.7
Q ss_pred CceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHHhhcCCCCcccC
Q 020024 30 DRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQCIESFMPSEKVEN 109 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~ 109 (332)
...+++||||||||+.|++..+++.. +..+.|..+.+.|+.+ .
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~----------------------g~~~~~~~~~~~~~~g---------------~ 53 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFC----------------------GAGEAVAEWTAKAMGG---------------S 53 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHc----------------------CChHHHHHHHHHHHCC---------------C
Confidence 34689999999999999987776642 1234555554444332 1
Q ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhhc--CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHH
Q 020024 110 FNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGER--LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 187 (332)
Q Consensus 110 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~~--i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~ 187 (332)
+++++.+... + .+++ .+.+++.+..+. ..++||+.+++++++++| ++++|+|+|. ..
T Consensus 54 ~~~~~~~~~~-------------~---~~~~-~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~~ 112 (224)
T PLN02954 54 VPFEEALAAR-------------L---SLFK-PSLSQVEEFLEKRPPRLSPGIPELVKKLRARG---TDVYLVSGGF-RQ 112 (224)
T ss_pred CCHHHHHHHH-------------H---HHcC-CCHHHHHHHHHHccCCCCccHHHHHHHHHHCC---CEEEEECCCc-HH
Confidence 3433332221 1 1122 255666666553 679999999999999998 9999999997 89
Q ss_pred HHHHHHHhcCCCcceEEeeeeEEcC-ceecccccc-cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC
Q 020024 188 LIRASFSSAGLNALNVHANEFSFKE-SISTGEIIE-KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 188 ~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG~~~~-~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
+++.+++.+|++..++++|.+.+++ |.++|.... ..+.+.+|...++.+....+. .+++|||||.+|+++++.++
T Consensus 113 ~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~~---~~~i~iGDs~~Di~aa~~~~ 189 (224)
T PLN02954 113 MIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHGY---KTMVMIGDGATDLEARKPGG 189 (224)
T ss_pred HHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHcCC---CceEEEeCCHHHHHhhhcCC
Confidence 9999999999865579999999864 667764322 223456799999888876553 58999999999999988855
Q ss_pred eeEEE
Q 020024 266 IGIVI 270 (332)
Q Consensus 266 ~gvv~ 270 (332)
..+++
T Consensus 190 ~~~~~ 194 (224)
T PLN02954 190 ADLFI 194 (224)
T ss_pred CCEEE
Confidence 44444
No 20
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.83 E-value=1e-19 Score=159.11 Aligned_cols=177 Identities=16% Similarity=0.249 Sum_probs=130.5
Q ss_pred CCceEEEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHH-HHHHHhhcCCCCcc
Q 020024 29 GDRLIIFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEE-YEQCIESFMPSEKV 107 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~p~~~~ 107 (332)
..+.+++||||.||++.||.+-+.+.+. .......+.+.|-++ |..++
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp----------------------~~~l~~qL~~t~p~~~Wne~M--------- 59 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELP----------------------TTDLFNQLRDTYPKGFWNELM--------- 59 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcc----------------------cchhHHHHHHhcccchHHHHH---------
Confidence 4789999999999999999888877652 112234444444433 33332
Q ss_pred cCCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHH
Q 020024 108 ENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD 187 (332)
Q Consensus 108 ~~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~ 187 (332)
...++ ++. =+|++.+++++.++.+++.||+.++++.+++.|. .++.|||+.. ..
T Consensus 60 -----~rv~k--------------~Lh----eqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~--~eliIVSDaN-sf 113 (256)
T KOG3120|consen 60 -----DRVFK--------------ELH----EQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGC--FELIIVSDAN-SF 113 (256)
T ss_pred -----HHHHH--------------HHH----HcCCCHHHHHHHHhcCCCCccHHHHHHHHHhCCC--ceEEEEecCc-hh
Confidence 11221 222 2589999999999999999999999999999882 5999999985 89
Q ss_pred HHHHHHHhcCCCc--ceEEeeeeEEcC-ceec--ccc---c-ccCCCCcchHHHHHHHHHHh---CCCCCceEEEEeCCc
Q 020024 188 LIRASFSSAGLNA--LNVHANEFSFKE-SIST--GEI---I-EKVESPIDKVQAFNNTLEKY---GTDRKNLSVYIGDSV 255 (332)
Q Consensus 188 ~I~~~l~~~g~~~--~~I~aN~l~~~~-g~~t--G~~---~-~~~~~~~~K~~~l~~~~~~~---~~~~~~~viyiGDs~ 255 (332)
||+.+|+.+|+.. ..|++|...++. |.+. +.- . ..+...+||..+|.++.... +. .++++||+|||.
T Consensus 114 FIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv-~yer~iYvGDG~ 192 (256)
T KOG3120|consen 114 FIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGV-RYERLIYVGDGA 192 (256)
T ss_pred HHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcCC-ceeeEEEEcCCC
Confidence 9999999998743 379999999975 5432 211 1 23667789999999887543 22 356999999999
Q ss_pred cchHHhhh
Q 020024 256 GDLLCLLE 263 (332)
Q Consensus 256 ~Dl~~l~~ 263 (332)
||+|+...
T Consensus 193 nD~CP~l~ 200 (256)
T KOG3120|consen 193 NDFCPVLR 200 (256)
T ss_pred CCcCcchh
Confidence 99998665
No 21
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.73 E-value=2e-16 Score=140.33 Aligned_cols=120 Identities=23% Similarity=0.286 Sum_probs=97.6
Q ss_pred CCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcC-ceecccc
Q 020024 141 GINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SISTGEI 219 (332)
Q Consensus 141 G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~tG~~ 219 (332)
|++.+++....+.+.++||+.++++.++++ ++++|+|++. ..+++..++++|++ ++++|.+.+++ +..+|.-
T Consensus 54 ~~~~~~i~~~~~~~~~~pg~~e~L~~L~~~----~~~~IvS~~~-~~~~~~~l~~~gl~--~~f~~~~~~~~~~~i~~~~ 126 (205)
T PRK13582 54 GLGLADIQEVIATLDPLPGAVEFLDWLRER----FQVVILSDTF-YEFAGPLMRQLGWP--TLFCHSLEVDEDGMITGYD 126 (205)
T ss_pred CCCHHHHHHHHHhCCCCCCHHHHHHHHHhc----CCEEEEeCCc-HHHHHHHHHHcCCc--hhhcceEEECCCCeEECcc
Confidence 689999999999999999999999999864 6899999997 89999999998874 57889988864 5566532
Q ss_pred cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChh
Q 020024 220 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 275 (332)
Q Consensus 220 ~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~ 275 (332)
...+.+|...++++... +.+++|||||.+|++++..|++|++++++..
T Consensus 127 ---~~~p~~k~~~l~~~~~~-----~~~~v~iGDs~~D~~~~~aa~~~v~~~~~~~ 174 (205)
T PRK13582 127 ---LRQPDGKRQAVKALKSL-----GYRVIAAGDSYNDTTMLGEADAGILFRPPAN 174 (205)
T ss_pred ---ccccchHHHHHHHHHHh-----CCeEEEEeCCHHHHHHHHhCCCCEEECCCHH
Confidence 22345788888765432 3589999999999999999999998876643
No 22
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.72 E-value=5.3e-17 Score=141.97 Aligned_cols=100 Identities=25% Similarity=0.326 Sum_probs=78.5
Q ss_pred CCChhHH----HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcC--ceecccccccCCCCcc
Q 020024 155 SLQDGCT----TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE--SISTGEIIEKVESPID 228 (332)
Q Consensus 155 ~lrpg~~----e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~--g~~tG~~~~~~~~~~~ 228 (332)
.++||+. +++++++++| ++++|||+|. ..+++++++.+|++..+++||++ +++ +..+|++.+..+. +
T Consensus 85 ~~~~~~~~~~~e~i~~~~~~~---~~v~IvS~~~-~~~i~~~~~~~~i~~~~v~~~~~-~~~~~~~~~~~~~~~~~~--~ 157 (192)
T PF12710_consen 85 KLFPGFIPDAMELIRELKDNG---IKVVIVSGSP-DEIIEPIAERLGIDDDNVIGNEL-FDNGGGIFTGRITGSNCG--G 157 (192)
T ss_dssp HHCTTCHTTHHHHHHHHHHTT---SEEEEEEEEE-HHHHHHHHHHTTSSEGGEEEEEE-ECTTCCEEEEEEEEEEES--H
T ss_pred ccCcCchhhHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCCCceEEEEEee-eecccceeeeeECCCCCC--c
Confidence 3455555 9999999998 9999999997 99999999999998778999999 754 3566666544322 7
Q ss_pred hHHHHHHHH--HHhCCCCCceEEEEeCCccchHHhh
Q 020024 229 KVQAFNNTL--EKYGTDRKNLSVYIGDSVGDLLCLL 262 (332)
Q Consensus 229 K~~~l~~~~--~~~~~~~~~~viyiGDs~~Dl~~l~ 262 (332)
|..+++++. ...+. ....++|||||.||++||+
T Consensus 158 K~~~l~~~~~~~~~~~-~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 158 KAEALKELYIRDEEDI-DPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHHTH-TCCEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CCCeEEEEECCHHHHHHhC
Confidence 999999982 11111 2478999999999999985
No 23
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=99.62 E-value=2.7e-14 Score=142.56 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=95.9
Q ss_pred hhcCCCCHHHHHHHhh----c---CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHh-cCCCcceEEeeee
Q 020024 137 GVLKGINLEDIKKAGE----R---LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS-AGLNALNVHANEF 208 (332)
Q Consensus 137 ~~f~G~~~~~l~~~~~----~---i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~-~g~~~~~I~aN~l 208 (332)
..|+|++.+++.+.++ + -.+++.+.+.+ +++| . .+|||++. ..+++++++. +|+ .+|+|+++
T Consensus 85 ~~f~G~~~~el~~~~r~~l~~f~~~~l~~~a~~~~---~~~g---~-~vvVSASp-~~~Vepfa~~~LGi--d~VIgTeL 154 (497)
T PLN02177 85 IAFAGLKIRDIELVSRSVLPKFYAEDVHPETWRVF---NSFG---K-RYIITASP-RIMVEPFVKTFLGA--DKVLGTEL 154 (497)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HhCC---C-EEEEECCc-HHHHHHHHHHcCCC--CEEEeccc
Confidence 4589999999977763 2 24777765544 4556 3 49999986 7788888865 676 57999999
Q ss_pred EE-cCceeccccccc-CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 209 SF-KESISTGEIIEK-VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 209 ~~-~~g~~tG~~~~~-~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
++ .+|.+||.+.++ +|.|.+|.+++++... .+ ...++||||.+|++||..|+.+++++++
T Consensus 155 ev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g---~~--~~~~aYgDS~sD~plL~~a~e~y~V~~~ 216 (497)
T PLN02177 155 EVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG---DA--LPDLGLGDRETDHDFMSICKEGYMVPRT 216 (497)
T ss_pred EECcCCEEeeeecCCCCCccHHHHHHHHHHhC---CC--CceEEEECCccHHHHHHhCCccEEeCCC
Confidence 99 589999999987 6899999999985442 21 1238999999999999999999999874
No 24
>PRK08238 hypothetical protein; Validated
Probab=99.54 E-value=1e-13 Score=138.06 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=95.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
..+++||+.+++++++++| .+++|+|++. ..+++.+++.+|+ ...++|.+.. .++.+..|...
T Consensus 70 ~lp~~pga~e~L~~lk~~G---~~v~LaTas~-~~~a~~i~~~lGl-Fd~Vigsd~~------------~~~kg~~K~~~ 132 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAG---RKLVLATASD-ERLAQAVAAHLGL-FDGVFASDGT------------TNLKGAAKAAA 132 (479)
T ss_pred hCCCChhHHHHHHHHHHCC---CEEEEEeCCC-HHHHHHHHHHcCC-CCEEEeCCCc------------cccCCchHHHH
Confidence 3579999999999999999 9999999986 8889999888875 2456665311 13445568877
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
+.++..+ ..++|+|||.+|+++++.|+.++++++++.|++.++++||+..-|..
T Consensus 133 l~~~l~~------~~~~yvGDS~~Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~~ 186 (479)
T PRK08238 133 LVEAFGE------RGFDYAGNSAADLPVWAAARRAIVVGASPGVARAARALGPVERVFPP 186 (479)
T ss_pred HHHHhCc------cCeeEecCCHHHHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecCC
Confidence 7765532 34789999999999999999999999999999999999999987754
No 25
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.29 E-value=3.1e-10 Score=101.78 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=72.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
...+.||+.++++.++++| ++++|+|++. ...++..++.+|+... + .. .+++. ......-|...
T Consensus 91 ~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~--f-~~------~~~~~---~~~~~kp~~~~ 154 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAG---YPLAVVTNKP-TPFVAPLLEALGIADY--F-SV------VIGGD---SLPNKKPDPAP 154 (226)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCccC--c-cE------EEcCC---CCCCCCcChHH
Confidence 4779999999999999988 9999999997 7889999988876321 1 10 11110 01111123456
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEc
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIG 271 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~ 271 (332)
++.++...+.. ..++++||||.+|+.++..+|+ .|.+.
T Consensus 155 ~~~~~~~~~~~-~~~~i~igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 155 LLLACEKLGLD-PEEMLFVGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred HHHHHHHcCCC-hhheEEECCCHHHHHHHHHCCCcEEEEC
Confidence 67777776663 4789999999999999999998 44443
No 26
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.28 E-value=1.1e-10 Score=107.90 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=71.2
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
...++||+.++|+.++++| ++++|+|.+ +...++..++.+|+.. ..|++.+ ....+ --+.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g---~~l~I~Tn~-~~~~~~~~l~~~gl~~~Fd~ii~~~-----d~~~~---------KP~P 168 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHE---IPIAVASTR-PRRYLERAIEAVGMEGFFSVVLAAE-----DVYRG---------KPDP 168 (260)
T ss_pred CcccCCCHHHHHHHHHHCC---CEEEEEeCc-CHHHHHHHHHHcCCHhhCcEEEecc-----cCCCC---------CCCH
Confidence 4678999999999999999 999999988 4889999999888632 1233211 11011 1134
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 268 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gv 268 (332)
..+...+.+.+.. ..+++|||||.+|+.++..|++.+
T Consensus 169 e~~~~a~~~l~~~-p~~~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 169 EMFMYAAERLGFI-PERCIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred HHHHHHHHHhCCC-hHHeEEEcCCHHHHHHHHHcCCEE
Confidence 5556666666653 478999999999999999999843
No 27
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.26 E-value=1.7e-10 Score=103.71 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=75.7
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
....+.||+.++++.++++| ++++|+|++- ...++..++.+|+.. .+...+ ..+... .+..+..
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~--~f~~~~-~~~~~~---------~~Kp~~~ 152 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQG---LKIGLASASP-LHMLEAVLTMFDLRD--YFDALA-SAEKLP---------YSKPHPE 152 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCC---CeEEEEeCCc-HHHHHHHHHhCcchh--cccEEE-EcccCC---------CCCCCHH
Confidence 35789999999999999999 9999999984 888999998877632 222111 011111 1112445
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
.++.++...+.. ..++++||||.+|+.++..||+..+..+.
T Consensus 153 ~~~~~~~~~~~~-~~~~~~igDs~~Di~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 153 VYLNCAAKLGVD-PLTCVALEDSFNGMIAAKAARMRSIVVPA 193 (222)
T ss_pred HHHHHHHHcCCC-HHHeEEEcCChhhHHHHHHcCCEEEEecC
Confidence 677777777763 47899999999999999999986554433
No 28
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.23 E-value=3.5e-10 Score=100.59 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=72.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
...++||+.++++.++++| +++.|+|++. ...++..++.+|+.. ..+++. + . ...+-.+.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~~-----~-----~----~~~~Kp~p 144 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKG---LRLGLVTNKP-TPLARPLLELLGLAKYFSVLIGG-----D-----S----LAQRKPHP 144 (213)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCcHhhCcEEEec-----C-----C----CCCCCCCh
Confidence 4689999999999999998 9999999984 789999999887632 112221 0 0 01111245
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+.+.+.. ..+++|||||.+|+.++..|++.++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 145 DPLLLAAERLGVA-PQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred HHHHHHHHHcCCC-hhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 6677777777763 4789999999999999999998544
No 29
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.21 E-value=5.4e-10 Score=99.84 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=72.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.+.||+.+++++++++| +++.|+|.+. ...+...++.+|+.. ..|++-+ . ...+..|.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g---~~~~i~S~~~-~~~~~~~l~~~gl~~~f~~i~~~~-----~---------~~~~Kp~p 141 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQG---YKLGIVTTKM-RDTVEMGLKLTGLDEFFDVVITLD-----D---------VEHAKPDP 141 (214)
T ss_pred hcccCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhceeEEEecC-----c---------CCCCCCCc
Confidence 4679999999999999998 9999999986 889999999888742 1222211 0 00111245
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+.+.+.+.+.. ..+++|||||.+|+.+++.||+.++
T Consensus 142 ~~~~~~~~~~~~~-~~~~~~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 142 EPVLKALELLGAK-PEEALMVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred HHHHHHHHHcCCC-HHHEEEECCCHHHHHHHHHCCCeEE
Confidence 6666677666653 4789999999999999999998433
No 30
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.20 E-value=1.1e-10 Score=94.82 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=75.1
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC--cceEEeeeeEEcC-ceecccc-cccCCCCc
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--ALNVHANEFSFKE-SISTGEI-IEKVESPI 227 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~~~I~aN~l~~~~-g~~tG~~-~~~~~~~~ 227 (332)
....++|++.++++.++++| .+++|+|+++ ...++.+++.+|+. ...+++....... +...+.. ...+..+.
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g---~~i~ivS~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (139)
T cd01427 21 EELELYPGVKEALKELKEKG---IKLALATNKS-RREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGK 96 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCC---CeEEEEeCch-HHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCC
Confidence 34678999999999999998 9999999997 89999999887762 2234443322211 0001111 11233444
Q ss_pred chHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 228 DKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 228 ~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
.|...++.+....+.. ...+++||||.+|+.+++.++.
T Consensus 97 ~~~~~~~~~~~~~~~~-~~~~~~igD~~~d~~~~~~~g~ 134 (139)
T cd01427 97 PNPDKLLAALKLLGVD-PEEVLMVGDSLNDIEMAKAAGG 134 (139)
T ss_pred CCHHHHHHHHHHcCCC-hhhEEEeCCCHHHHHHHHHcCC
Confidence 5666666666665542 4789999999999999999664
No 31
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.20 E-value=2.3e-09 Score=94.50 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=75.0
Q ss_pred HHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCC
Q 020024 149 KAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESP 226 (332)
Q Consensus 149 ~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~ 226 (332)
+....+.+.||+.++++.++++| ++++|+|.+. ...+...++.+|+.. ..|++.+ . .|.. +
T Consensus 86 ~~~~~~~~~~~~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~gl~~~fd~i~~s~-----~--~~~~--K---- 148 (198)
T TIGR01428 86 EAYLRLPPHPDVPAGLRALKERG---YRLAILSNGS-PAMLKSLVKHAGLDDPFDAVLSAD-----A--VRAY--K---- 148 (198)
T ss_pred HHHhcCCCCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHCCChhhhheeEehh-----h--cCCC--C----
Confidence 33446889999999999999999 9999999885 889999998888631 1233321 1 1110 1
Q ss_pred cchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee-EEEcC
Q 020024 227 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIGS 272 (332)
Q Consensus 227 ~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-vv~~~ 272 (332)
-+...++..+...+.. ..++++|||+.+|+.++..+|+. |.+.+
T Consensus 149 -P~~~~~~~~~~~~~~~-p~~~~~vgD~~~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 149 -PAPQVYQLALEALGVP-PDEVLFVASNPWDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred -CCHHHHHHHHHHhCCC-hhhEEEEeCCHHHHHHHHHCCCcEEEecC
Confidence 1345566666666653 47899999999999999999984 44443
No 32
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.19 E-value=3.4e-10 Score=101.46 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=73.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC--c--ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--A--LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
...+.||+.+++++++++| +++.|+|.+. ...+...|+.+|+. . ..++|. +....+ --
T Consensus 85 ~~~l~~G~~~~L~~L~~~g---~~~~ivT~~~-~~~~~~~l~~~~l~~~~~f~~i~~~-----~~~~~~---------KP 146 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSG---IKVALTTGFD-RDTAERLLEKLGWTVGDDVDAVVCP-----SDVAAG---------RP 146 (220)
T ss_pred CCccCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHHhhhhhhccCCEEEcC-----CcCCCC---------CC
Confidence 3689999999999999999 9999999885 88999999887763 1 122221 111111 11
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeE
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 268 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gv 268 (332)
+...+...+.+.+.....+++||||+.+|+.+++.||+.+
T Consensus 147 ~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 147 APDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred CHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 4566777777766532468999999999999999999975
No 33
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.13 E-value=1.2e-09 Score=105.67 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=72.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
...+.||+.++|+.|+++| +++.|+|.+- ...++..++.+|+.. ..|++- +....+ --+.
T Consensus 214 ~~~l~pGa~ElL~~Lk~~G---iklaIaSn~~-~~~~~~~L~~lgL~~yFd~Iv~s-----ddv~~~---------KP~P 275 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYK---IPMALVSTRP-RKTLENAIGSIGIRGFFSVIVAA-----EDVYRG---------KPDP 275 (381)
T ss_pred CCCcCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCHHHceEEEec-----CcCCCC---------CCCH
Confidence 4678999999999999999 9999999985 889999999888632 123331 111011 1134
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+...+.. ..+++|||||.+|+.++..|++.++
T Consensus 276 eifl~A~~~lgl~-Peecl~IGDS~~DIeAAk~AGm~~I 313 (381)
T PLN02575 276 EMFIYAAQLLNFI-PERCIVFGNSNQTVEAAHDARMKCV 313 (381)
T ss_pred HHHHHHHHHcCCC-cccEEEEcCCHHHHHHHHHcCCEEE
Confidence 5555566666653 4789999999999999999998433
No 34
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.11 E-value=6.6e-09 Score=94.15 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=70.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcc--eEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
...++||+.++++.|+++| +.+.|+|.+ +..++...++.+|+... .+++. +. .+. +--+.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g---~~l~i~Tn~-~~~~~~~~l~~~~l~~~f~~i~~~-----~~--~~~-------~KP~p 154 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAG---CVWGIVTNK-PEYLARLILPQLGWEQRCAVLIGG-----DT--LAE-------RKPHP 154 (229)
T ss_pred cCeeCCCHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCchhcccEEEec-----Cc--CCC-------CCCCH
Confidence 4789999999999999998 999999987 47888888888776321 11111 10 111 11134
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+.+.+.. ..++++||||.+|+.+++.||+..+
T Consensus 155 ~~~~~~~~~l~~~-p~~~l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 155 LPLLVAAERIGVA-PTDCVYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred HHHHHHHHHhCCC-hhhEEEeCCCHHHHHHHHHCCCcEE
Confidence 5566666666663 4789999999999999999998533
No 35
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.11 E-value=2.5e-09 Score=98.13 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=69.8
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcc---eEEeeeeEEcCceecccccccCCCCcc
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL---NVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~---~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
+...+.||+.++|+.|+++| +++.|+|++. ...++.+++.+|+... .|++. +....+ --
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g---~~l~IvT~~~-~~~~~~~l~~~gl~~~f~d~ii~~-----~~~~~~---------KP 157 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARG---IKIGSTTGYT-REMMDVVAPEAALQGYRPDYNVTT-----DDVPAG---------RP 157 (253)
T ss_pred hcCccCCCHHHHHHHHHHCC---CeEEEECCCc-HHHHHHHHHHHHhcCCCCceEEcc-----ccCCCC---------CC
Confidence 35789999999999999999 9999999884 8899999988775321 12221 111001 11
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
+...+...+.+.+.....+++|||||.+|+.++..|++.
T Consensus 158 ~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 158 APWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred CHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCe
Confidence 334555556666642246899999999999999999984
No 36
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.11 E-value=2.4e-09 Score=99.71 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=72.0
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
..+.+.||+.++|+.|+++| +++.|+|.+. ..++...++.+|+... +. . +.++... ..|..
T Consensus 139 ~~~~l~pg~~e~L~~L~~~g---i~laIvSn~~-~~~~~~~L~~~gl~~~--F~-~------vi~~~~~------~~k~~ 199 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRS---LCLGILSSNS-RQNIEAFLQRQGLRSL--FS-V------VQAGTPI------LSKRR 199 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhh--eE-E------EEecCCC------CCCHH
Confidence 35788999999999999999 9999999985 8999999998886321 11 0 1111111 12556
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
.+..++.+.+.. ..+++|||||.+|+.++..|++-
T Consensus 200 ~~~~~l~~~~~~-p~~~l~IGDs~~Di~aA~~AG~~ 234 (273)
T PRK13225 200 ALSQLVAREGWQ-PAAVMYVGDETRDVEAARQVGLI 234 (273)
T ss_pred HHHHHHHHhCcC-hhHEEEECCCHHHHHHHHHCCCe
Confidence 677777766653 46899999999999999999984
No 37
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.10 E-value=3.5e-09 Score=94.80 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=71.9
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.++||+.++++.|+++| +++.|+|.+. ...+...++.+|+.. ..|++.. . .|. .--+.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g---~~~~i~Tn~~-~~~~~~~l~~~~l~~~f~~i~~~~-----~--~~~-------~KP~~ 153 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESG---YRLGIITDGL-PVKQWEKLERLGVRDFFDAVITSE-----E--EGV-------EKPHP 153 (221)
T ss_pred hCCCCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHhCChHHhccEEEEec-----c--CCC-------CCCCH
Confidence 4789999999999999998 9999999985 778888888877632 1222211 0 111 11133
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCee-EEEcC
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADIG-IVIGS 272 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~g-vv~~~ 272 (332)
..++..+.+.+.. ..++++||||. +|+.+++.||+. |.+..
T Consensus 154 ~~~~~~~~~~~~~-~~~~~~igDs~~~di~~A~~aG~~~i~~~~ 196 (221)
T TIGR02253 154 KIFYAALKRLGVK-PEEAVMVGDRLDKDIKGAKNLGMKTVWINQ 196 (221)
T ss_pred HHHHHHHHHcCCC-hhhEEEECCChHHHHHHHHHCCCEEEEECC
Confidence 5566666666653 46899999998 999999999984 44443
No 38
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.10 E-value=2.2e-09 Score=95.25 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=73.3
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcch
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDK 229 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K 229 (332)
..+.+.||+.+++++++++| ++++|+|.+. ...+...++.+|+.. ..+++. + .. ..+.-|
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~~l~~~f~~i~~~-----~-----~~----~~~KP~ 133 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADG---VGTAIATGKS-GPRARSLLEALGLLPLFDHVIGS-----D-----EV----PRPKPA 133 (205)
T ss_pred cccccCCCHHHHHHHHHHCC---CeEEEEeCCc-hHHHHHHHHHcCChhheeeEEec-----C-----cC----CCCCCC
Confidence 45889999999999999999 9999999984 788888888887632 122221 1 00 011124
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
...+.+.+++.+.. ..+++|||||.+|+.++..+|+.++
T Consensus 134 ~~~~~~~~~~~~~~-~~~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 134 PDIVREALRLLDVP-PEDAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred hHHHHHHHHHcCCC-hhheEEEcCCHHHHHHHHHcCCeEE
Confidence 56777777777653 4789999999999999999998543
No 39
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.09 E-value=6.2e-09 Score=96.46 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=69.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc---ceEEeeeeEEcCceecccccccCCCCcch
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA---LNVHANEFSFKESISTGEIIEKVESPIDK 229 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~---~~I~aN~l~~~~g~~tG~~~~~~~~~~~K 229 (332)
.+.+.||+.++|+.|+++| +++.|+|++. ...+..+++.+++.. ..|++. +.. + .+--+
T Consensus 99 ~~~~~pg~~elL~~L~~~g---~~l~I~T~~~-~~~~~~~l~~~~l~~~~~d~i~~~-----~~~--~-------~~KP~ 160 (267)
T PRK13478 99 YATPIPGVLEVIAALRARG---IKIGSTTGYT-REMMDVVVPLAAAQGYRPDHVVTT-----DDV--P-------AGRPY 160 (267)
T ss_pred cCCCCCCHHHHHHHHHHCC---CEEEEEcCCc-HHHHHHHHHHHhhcCCCceEEEcC-----CcC--C-------CCCCC
Confidence 5789999999999999999 9999999885 788888887665421 112221 110 0 01113
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
...+...+.+.+.....+++|||||.+|+.++..|++.
T Consensus 161 p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~ 198 (267)
T PRK13478 161 PWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMW 198 (267)
T ss_pred hHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCE
Confidence 45566666666653236899999999999999999983
No 40
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.08 E-value=5.1e-09 Score=97.50 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=70.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
...++||+.++|+.++++| ++++|+|.+- ...++..++.+++.. +.+.+ +++.- .....-+...
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g---~~l~ivTn~~-~~~~~~~l~~~~i~~---~f~~i------~~~d~---~~~~Kp~p~~ 162 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQG---VEMALITNKP-ERFVAPLLDQMKIGR---YFRWI------IGGDT---LPQKKPDPAA 162 (272)
T ss_pred CCccCCCHHHHHHHHHHCC---CeEEEEECCc-HHHHHHHHHHcCcHh---hCeEE------EecCC---CCCCCCCcHH
Confidence 3678999999999999998 9999999874 788888888877632 11111 11110 0111124456
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
++.++...+.. ..++++|||+.+|+.++..+++.
T Consensus 163 ~~~~~~~~g~~-~~~~l~IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 163 LLFVMKMAGVP-PSQSLFVGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred HHHHHHHhCCC-hhHEEEECCCHHHHHHHHHCCCe
Confidence 67777776653 47899999999999999999973
No 41
>PRK11587 putative phosphatase; Provisional
Probab=99.07 E-value=7.7e-09 Score=92.82 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=68.6
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcc-eEEeeeeEEcCceecccccccCCCCcchH
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL-NVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~-~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
..+.++||+.++|+.|+++| +++.|+|.+. ...+...++..++... .+++.+ ....++ -+.
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g---~~~~ivTn~~-~~~~~~~l~~~~l~~~~~i~~~~-----~~~~~K---------P~p 141 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLG---IPWAIVTSGS-VPVASARHKAAGLPAPEVFVTAE-----RVKRGK---------PEP 141 (218)
T ss_pred cCceeCcCHHHHHHHHHHcC---CcEEEEcCCC-chHHHHHHHhcCCCCccEEEEHH-----HhcCCC---------CCc
Confidence 35789999999999999999 9999999884 5666777776665311 222211 000001 123
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee-EEEc
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIG 271 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-vv~~ 271 (332)
..+...+...+.. ..+++|||||.+|+.++..|++. |.+.
T Consensus 142 ~~~~~~~~~~g~~-p~~~l~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 142 DAYLLGAQLLGLA-PQECVVVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred HHHHHHHHHcCCC-cccEEEEecchhhhHHHHHCCCEEEEEC
Confidence 4444455555653 47899999999999999999984 4444
No 42
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=6.6e-09 Score=95.33 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=71.7
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.+.||+.++|++|+++| +++.|+|.+. ...++..++.+|+.. ..|++.+ ....++ -+.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g---~~l~I~Tn~~-~~~~~~~l~~~gl~~~Fd~iv~~~-----~~~~~K---------P~p 167 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRG---LKRAAVTNAP-RENAELMISLLGLSDFFQAVIIGS-----ECEHAK---------PHP 167 (248)
T ss_pred cCCcCccHHHHHHHHHHcC---CeEEEEeCCC-HHHHHHHHHHcCChhhCcEEEecC-----cCCCCC---------CCh
Confidence 5789999999999999999 9999999985 899999999888642 1233321 111111 123
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+.+.+.. ..+++|||||.+|+.+++.|++.++
T Consensus 168 ~~~~~a~~~~~~~-~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 168 DPYLKALEVLKVS-KDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred HHHHHHHHHhCCC-hhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 4455556666653 4789999999999999999998543
No 43
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.02 E-value=9.4e-09 Score=92.97 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=72.0
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 151 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 151 ~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
...+.+.||+.++++.++++| ++++|+|.+ +...+...++.+|+.. ..|++..- .|. ++ -
T Consensus 89 ~~~~~~~~g~~e~L~~Lk~~g---~~~~i~Tn~-~~~~~~~~l~~~~l~~~fd~iv~s~~-------~~~--~K-----P 150 (224)
T PRK14988 89 GPRAVLREDTVPFLEALKASG---KRRILLTNA-HPHNLAVKLEHTGLDAHLDLLLSTHT-------FGY--PK-----E 150 (224)
T ss_pred hccCCcCCCHHHHHHHHHhCC---CeEEEEeCc-CHHHHHHHHHHCCcHHHCCEEEEeee-------CCC--CC-----C
Confidence 356889999999999999999 999999988 4888888888877632 23333220 010 01 1
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
+...+...+++.+.. ..+++|||||.+|+.++..||+.
T Consensus 151 ~p~~~~~~~~~~~~~-p~~~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 151 DQRLWQAVAEHTGLK-AERTLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred CHHHHHHHHHHcCCC-hHHEEEEcCCHHHHHHHHHcCCe
Confidence 345566666666653 47899999999999999999985
No 44
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.02 E-value=1e-08 Score=89.05 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=66.9
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.+.||+.++++.++++| ++++|+|.+ ..++..++.+|+.. ..+++.. . .+. ...+.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g---~~i~i~S~~---~~~~~~l~~~~l~~~f~~v~~~~-----~--~~~-------~kp~~ 145 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKG---IAVGLGSSS---KNADRILAKLGLTDYFDAIVDAD-----E--VKE-------GKPHP 145 (185)
T ss_pred CCCCCcCHHHHHHHHHHcC---CeEEEEeCc---hhHHHHHHHcChHHHCCEeeehh-----h--CCC-------CCCCh
Confidence 4789999999999999998 999999975 56788888877632 1222211 0 000 11123
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+++.+.. .++++|||||.+|+.++..+++..+
T Consensus 146 ~~~~~~~~~~~~~-~~~~v~IgD~~~di~aA~~~G~~~i 183 (185)
T TIGR02009 146 ETFLLAAELLGVS-PNECVVFEDALAGVQAARAAGMFAV 183 (185)
T ss_pred HHHHHHHHHcCCC-HHHeEEEeCcHhhHHHHHHCCCeEe
Confidence 4455556565653 4789999999999999999997543
No 45
>PRK09449 dUMP phosphatase; Provisional
Probab=99.02 E-value=2.1e-08 Score=90.00 Aligned_cols=100 Identities=17% Similarity=0.309 Sum_probs=70.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
...+.||+.++++.|+ +| +++.|+|.+. ...++..++.+|+.. ..|++.+ . .|. .--+.
T Consensus 93 ~~~~~~g~~~~L~~L~-~~---~~~~i~Tn~~-~~~~~~~l~~~~l~~~fd~v~~~~-----~--~~~-------~KP~p 153 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GK---VKMGIITNGF-TELQQVRLERTGLRDYFDLLVISE-----Q--VGV-------AKPDV 153 (224)
T ss_pred cCccCccHHHHHHHHH-hC---CeEEEEeCCc-HHHHHHHHHhCChHHHcCEEEEEC-----c--cCC-------CCCCH
Confidence 4779999999999999 57 8999999986 788888888887632 1222211 0 110 11134
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCee-EEEc
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADIG-IVIG 271 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~g-vv~~ 271 (332)
..+...+.+.+.....+++|||||. +|+.+++.||+. |.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 154 AIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred HHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 5666667766643336899999998 799999999984 4443
No 46
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.01 E-value=1.4e-09 Score=96.23 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=68.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcch--H
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDK--V 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K--~ 230 (332)
..++||++.++|+.|++.| +++.|+|+.. ......+++.+|+....++++.. ..+..| .
T Consensus 125 ~d~~~~~~~~~l~~L~~~G---i~~~i~TGD~-~~~a~~~~~~lgi~~~~v~a~~~---------------~kP~~k~~~ 185 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAG---IKVAILTGDN-ESTASAIAKQLGIFDSIVFARVI---------------GKPEPKIFL 185 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTT---EEEEEEESSE-HHHHHHHHHHTTSCSEEEEESHE---------------TTTHHHHHH
T ss_pred cCcchhhhhhhhhhhhccC---cceeeeeccc-ccccccccccccccccccccccc---------------ccccchhHH
Confidence 3589999999999999999 9999999874 78888888888884434555332 233457 5
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
++++++ +. ...++++||||.||++|++.||
T Consensus 186 ~~i~~l----~~-~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 186 RIIKEL----QV-KPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHHHHH----TC-TGGGEEEEESSGGHHHHHHHSS
T ss_pred HHHHHH----hc-CCCEEEEEccCHHHHHHHHhCc
Confidence 555543 32 1358999999999999999987
No 47
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.01 E-value=5.8e-09 Score=90.58 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=64.9
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
..+.||+.++|+.|+++| +++.|+|.+.. ....++.+|+.. ..+++. +. .+. ..-+..
T Consensus 86 ~~~~pg~~~~L~~L~~~g---~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~-----~~--~~~-------~kp~p~ 145 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNN---IKIALASASKN---APTVLEKLGLIDYFDAIVDP-----AE--IKK-------GKPDPE 145 (185)
T ss_pred cccCccHHHHHHHHHHCC---CeEEEEeCCcc---HHHHHHhcCcHhhCcEEEeh-----hh--cCC-------CCCChH
Confidence 578999999999999998 99999997642 345677777531 112111 00 010 111445
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
.++..+.+.+.. ..++++|||+.+|+.++..+++..+
T Consensus 146 ~~~~~~~~~~~~-~~~~v~vgD~~~di~aA~~aG~~~i 182 (185)
T TIGR01990 146 IFLAAAEGLGVS-PSECIGIEDAQAGIEAIKAAGMFAV 182 (185)
T ss_pred HHHHHHHHcCCC-HHHeEEEecCHHHHHHHHHcCCEEE
Confidence 666666666653 4789999999999999999997543
No 48
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.00 E-value=7.5e-09 Score=93.27 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcc--eEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
..+.||..+.+.+++++| +++.|+|..- ...++.+|+.+|+... .+++ .+ +. ...+ -...
T Consensus 88 ~~~~~gv~e~L~~L~~~g---~~l~i~T~k~-~~~~~~~l~~~gl~~~F~~i~g----~~-~~----~~~K-----P~P~ 149 (220)
T COG0546 88 SRLFPGVKELLAALKSAG---YKLGIVTNKP-ERELDILLKALGLADYFDVIVG----GD-DV----PPPK-----PDPE 149 (220)
T ss_pred CccCCCHHHHHHHHHhCC---CeEEEEeCCc-HHHHHHHHHHhCCccccceEEc----CC-CC----CCCC-----cCHH
Confidence 579999999999999999 9999999884 8999999999887421 2222 00 00 0011 1335
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
.+...+...+.+ ..+++|||||.+|+.|.+.|++
T Consensus 150 ~l~~~~~~~~~~-~~~~l~VGDs~~Di~aA~~Ag~ 183 (220)
T COG0546 150 PLLLLLEKLGLD-PEEALMVGDSLNDILAAKAAGV 183 (220)
T ss_pred HHHHHHHHhCCC-hhheEEECCCHHHHHHHHHcCC
Confidence 566667777764 4589999999999999999995
No 49
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.00 E-value=3.6e-08 Score=87.21 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=64.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
..+.||+.++++.++++| ++++|+|.+- . .+...++.+|+.. ..|++.. . .|. .--+..
T Consensus 104 ~~~~~g~~~~l~~L~~~g---~~~~i~Sn~~-~-~~~~~l~~~~l~~~fd~i~~s~-----~--~~~-------~KP~~~ 164 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERG---LILGVISNFD-S-RLRGLLEALGLLEYFDFVVTSY-----E--VGA-------EKPDPK 164 (203)
T ss_pred ceeCcCHHHHHHHHHHCC---CEEEEEeCCc-h-hHHHHHHHCCcHHhcceEEeec-----c--cCC-------CCCCHH
Confidence 468999999999999998 9999999753 4 4577787777531 1222211 0 111 001234
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCee
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADIG 267 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~g 267 (332)
.+...+...+.. ..++++||||. +|+.++..+|+.
T Consensus 165 ~~~~~~~~~~~~-~~~~~~IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 165 IFQEALERAGIS-PEEALHIGDSLRNDYQGARAAGWR 200 (203)
T ss_pred HHHHHHHHcCCC-hhHEEEECCCchHHHHHHHHcCCe
Confidence 556666666653 47899999997 899999999864
No 50
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.98 E-value=4.7e-08 Score=86.49 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=76.7
Q ss_pred CHHHHHHHhh--cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhc-CCCc--ceEEeeeeEEcCceecc
Q 020024 143 NLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSA-GLNA--LNVHANEFSFKESISTG 217 (332)
Q Consensus 143 ~~~~l~~~~~--~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~-g~~~--~~I~aN~l~~~~g~~tG 217 (332)
+.+++.+... ...++||+.++++.++++| ++++|+|.+. ...+...+... ++.. ..|++.. . .|
T Consensus 70 ~~~~~~~~~~~~~~~~~~g~~e~L~~l~~~g---~~~~i~Sn~~-~~~~~~~~~~~~~l~~~fd~v~~s~-----~--~~ 138 (199)
T PRK09456 70 SYEQFAHGWQAVFVALRPEVIAIMHKLREQG---HRVVVLSNTN-RLHTTFWPEEYPEVRAAADHIYLSQ-----D--LG 138 (199)
T ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHhCC---CcEEEEcCCc-hhhHHHHHhhchhHHHhcCEEEEec-----c--cC
Confidence 3444443332 2468999999999999999 9999999874 55555444332 2210 1222211 0 11
Q ss_pred cccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEcCChhHHHHhHh
Q 020024 218 EIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSSSSLRRVGSQ 282 (332)
Q Consensus 218 ~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~~~~~L~~~~~~ 282 (332)
. .--+....+..+.+.+.. ..+++||||+..|+.+++.+|+ .|.+.+...+.++.+.
T Consensus 139 ~-------~KP~p~~~~~~~~~~~~~-p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~~~~~~l~~ 196 (199)
T PRK09456 139 M-------RKPEARIYQHVLQAEGFS-AADAVFFDDNADNIEAANALGITSILVTDKQTIPDYFAK 196 (199)
T ss_pred C-------CCCCHHHHHHHHHHcCCC-hhHeEEeCCCHHHHHHHHHcCCEEEEecCCccHHHHHHh
Confidence 0 111445666666666653 4789999999999999999998 5566666666665543
No 51
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.97 E-value=4e-08 Score=83.41 Aligned_cols=98 Identities=20% Similarity=0.308 Sum_probs=74.1
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC--cceEEeeeeEEcCceecccccccCCCCcch
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--ALNVHANEFSFKESISTGEIIEKVESPIDK 229 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K 229 (332)
....+.||+.++++.++++| ++++|+|.+ +...+...++.+|+. ...+++.. . ......+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~---~~~~i~Sn~-~~~~~~~~l~~~~~~~~f~~i~~~~----------~----~~~~Kp~ 135 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKG---IPLVIVSNG-SRERIERVLERLGLDDYFDEIISSD----------D----VGSRKPD 135 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTT---SEEEEEESS-EHHHHHHHHHHTTHGGGCSEEEEGG----------G----SSSSTTS
T ss_pred hccchhhhhhhhhhhccccc---ceeEEeecC-Ccccccccccccccccccccccccc----------h----hhhhhhH
Confidence 46899999999999999888 999999988 589999999988764 12333311 0 0111124
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeE
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 268 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gv 268 (332)
...++..+.+.+.. ..++++|||+..|+.++..+|+..
T Consensus 136 ~~~~~~~~~~~~~~-p~~~~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 136 PDAYRRALEKLGIP-PEEILFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp HHHHHHHHHHHTSS-GGGEEEEESSHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCC-cceEEEEeCCHHHHHHHHHcCCeE
Confidence 46677777777764 489999999999999999999743
No 52
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.89 E-value=3.8e-08 Score=83.06 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=64.9
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.....||+.++++.++++| ++++|+|.+. ...+...++.+ +.. ..|++ .+.. . +.-+.
T Consensus 62 ~~~~~~g~~e~l~~L~~~g---~~~~i~T~~~-~~~~~~~~~~~-l~~~f~~i~~-----~~~~---------~-~Kp~~ 121 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAG---IKLGIISNGS-LRAQKLLLRKH-LGDYFDLILG-----SDEF---------G-AKPEP 121 (154)
T ss_pred hheeccCHHHHHHHHHHCc---CeEEEEeCCc-hHHHHHHHHHH-HHhcCcEEEe-----cCCC---------C-CCcCH
Confidence 4556799999999999988 9999999996 77888877764 311 12222 1111 0 11245
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
..+...+.+.+.. . +++||||+.+|+.+++.|+
T Consensus 122 ~~~~~~~~~~~~~-~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 122 EIFLAALESLGLP-P-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred HHHHHHHHHcCCC-C-CEEEEeCCHHHHHHHHHcc
Confidence 6677777777764 4 8999999999999998875
No 53
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.88 E-value=2e-07 Score=87.41 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=69.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
+.+.||+.++|+.++++| ++++|+|.+. ...+..+++..+... +.+.+.+ +++.- ....-.+...+
T Consensus 143 ~~l~pGv~elL~~L~~~g---~~l~IvTn~~-~~~~~~~l~~~~~~~---~~~~~~~----v~~~~---~~~~KP~p~~~ 208 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAG---IKVAVCSTSN-EKAVSKIVNTLLGPE---RAQGLDV----FAGDD---VPKKKPDPDIY 208 (286)
T ss_pred CCchhhHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHhcccc---ccCceEE----Eeccc---cCCCCCCHHHH
Confidence 689999999999999999 9999999874 888888877542110 1111111 01100 00111134566
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
...+...+.. ..++++||||.+|+.++..||+.++..
T Consensus 209 ~~a~~~~~~~-p~~~l~IGDs~~Di~aA~~aG~~~i~v 245 (286)
T PLN02779 209 NLAAETLGVD-PSRCVVVEDSVIGLQAAKAAGMRCIVT 245 (286)
T ss_pred HHHHHHhCcC-hHHEEEEeCCHHhHHHHHHcCCEEEEE
Confidence 6666666653 478999999999999999999854443
No 54
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.88 E-value=3.8e-08 Score=98.29 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=68.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
..+++||+.++|++++++| +++.|+|.+- ..++...++.+|+.. ..+++- +.. .+ ..|.
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g---~~l~IvS~~~-~~~~~~~l~~~~l~~~f~~i~~~-----d~v-~~---------~~kP 388 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENN---CSIYIASNGL-TEYLRAIVSYYDLDQWVTETFSI-----EQI-NS---------LNKS 388 (459)
T ss_pred CCCcCCCHHHHHHHHHHCC---CeEEEEeCCc-hHHHHHHHHHCCcHhhcceeEec-----CCC-CC---------CCCc
Confidence 4689999999999999998 9999999984 899999999887632 122221 111 00 1233
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+.+.+ ..++++||||.+|+.++..|++.++
T Consensus 389 ~~~~~al~~l~---~~~~v~VGDs~~Di~aAk~AG~~~I 424 (459)
T PRK06698 389 DLVKSILNKYD---IKEAAVVGDRLSDINAAKDNGLIAI 424 (459)
T ss_pred HHHHHHHHhcC---cceEEEEeCCHHHHHHHHHCCCeEE
Confidence 44555555443 2689999999999999999998443
No 55
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.87 E-value=1.2e-07 Score=84.75 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=69.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.++||+.+++++++++ ++++|+|.++ ...++..++.+|+.. ..|++.. + .| ..--+.
T Consensus 95 ~~~~~~g~~~~L~~l~~~----~~~~i~Sn~~-~~~~~~~l~~~~l~~~fd~i~~~~----~---~~-------~~KP~~ 155 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK----FRLYIVTNGV-RETQYKRLRKSGLFPFFDDIFVSE----D---AG-------IQKPDK 155 (224)
T ss_pred cCeeCccHHHHHHHHHhc----CcEEEEeCCc-hHHHHHHHHHCCcHhhcCEEEEcC----c---cC-------CCCCCH
Confidence 478999999999999964 7999999987 788888898887632 1222211 0 01 011134
Q ss_pred HHHHHHHHHh-CCCCCceEEEEeCCc-cchHHhhhcCe-eEEEc
Q 020024 231 QAFNNTLEKY-GTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 271 (332)
Q Consensus 231 ~~l~~~~~~~-~~~~~~~viyiGDs~-~Dl~~l~~Ad~-gvv~~ 271 (332)
..+...+.+. +.. ..+++|||||. +|+.+++.+|+ .|.+.
T Consensus 156 ~~~~~~~~~~~~~~-~~~~v~igD~~~~di~~A~~~G~~~i~~~ 198 (224)
T TIGR02254 156 EIFNYALERMPKFS-KEEVLMIGDSLTADIKGGQNAGLDTCWMN 198 (224)
T ss_pred HHHHHHHHHhcCCC-chheEEECCCcHHHHHHHHHCCCcEEEEC
Confidence 5566666666 543 46899999998 79999999998 34444
No 56
>PLN02940 riboflavin kinase
Probab=98.86 E-value=3.9e-08 Score=95.90 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=71.0
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHH-hcCCCc--ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS-SAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~-~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
+.+.+.||+.++++.|+++| +++.|+|.+. ...+...++ ..|+.. ..|+|.+ .. ..+--
T Consensus 90 ~~~~l~pGv~elL~~Lk~~g---~~l~IvTn~~-~~~~~~~l~~~~gl~~~Fd~ii~~d-----~v---------~~~KP 151 (382)
T PLN02940 90 CNIKALPGANRLIKHLKSHG---VPMALASNSP-RANIEAKISCHQGWKESFSVIVGGD-----EV---------EKGKP 151 (382)
T ss_pred ccCCCCcCHHHHHHHHHHCC---CcEEEEeCCc-HHHHHHHHHhccChHhhCCEEEehh-----hc---------CCCCC
Confidence 35789999999999999999 9999999985 788888776 556521 1233311 10 01111
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
+.+.+...+...+.. ..++++||||.+|+.++..||+.++
T Consensus 152 ~p~~~~~a~~~lgv~-p~~~l~VGDs~~Di~aA~~aGi~~I 191 (382)
T PLN02940 152 SPDIFLEAAKRLNVE-PSNCLVIEDSLPGVMAGKAAGMEVI 191 (382)
T ss_pred CHHHHHHHHHHcCCC-hhHEEEEeCCHHHHHHHHHcCCEEE
Confidence 346666667666663 4789999999999999999998533
No 57
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.85 E-value=4.5e-08 Score=89.20 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEcccc---CHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW---CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~---s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
....+++.+++++|+++| ++++|||+.. ....++.+++.+|++.. + ...+ ++.-... ...+|.
T Consensus 113 s~p~~~a~elL~~l~~~G---~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~--f--~~i~-----~~d~~~~--~Kp~~~ 178 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRG---DAIFFVTGRTPGKTDTVSKTLAKNFHIPAM--N--PVIF-----AGDKPGQ--YQYTKT 178 (237)
T ss_pred CcchhHHHHHHHHHHHCC---CEEEEEeCCCCCcCHHHHHHHHHHhCCchh--e--eEEE-----CCCCCCC--CCCCHH
Confidence 456667999999999999 9999999862 14578888888887531 1 1112 2211111 011243
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
. ++.++ ..++|||||.+|+.+.+.|++
T Consensus 179 ~----~l~~~-----~i~i~vGDs~~DI~aAk~AGi 205 (237)
T TIGR01672 179 Q----WIQDK-----NIRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred H----HHHhC-----CCeEEEeCCHHHHHHHHHCCC
Confidence 3 23332 247999999999999999998
No 58
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.85 E-value=1.7e-07 Score=81.72 Aligned_cols=99 Identities=12% Similarity=0.193 Sum_probs=67.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.+.||+.++++.++ .+++|+|.+. ...+...++.+|+.. ..|++.+- .+. ......-+.
T Consensus 82 ~~~~~~g~~~~L~~L~------~~~~i~Tn~~-~~~~~~~l~~~gl~~~fd~i~~~~~-------~~~---~~~~~KP~p 144 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP------GRKIIFTNGD-RAHARRALNRLGIEDCFDGIFCFDT-------ANP---DYLLPKPSP 144 (184)
T ss_pred hCCCCHHHHHHHHhCC------CCEEEEeCCC-HHHHHHHHHHcCcHhhhCeEEEeec-------ccC---ccCCCCCCH
Confidence 4678999999999886 3789999985 889999999888632 12333210 010 000011134
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+++.+.. ..++++|||+..|+.++..+|+..+
T Consensus 145 ~~~~~~~~~~~~~-~~~~l~vgD~~~di~aA~~~G~~~i 182 (184)
T TIGR01993 145 QAYEKALREAGVD-PERAIFFDDSARNIAAAKALGMKTV 182 (184)
T ss_pred HHHHHHHHHhCCC-ccceEEEeCCHHHHHHHHHcCCEEe
Confidence 5666666666653 4789999999999999999997543
No 59
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.83 E-value=2.7e-07 Score=79.63 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=65.1
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
+.+.||+.++++.++++| ++++|+|.+. ... ...+.+.|+.. ..|++. +. .| .+.-+..
T Consensus 84 ~~~~~g~~~~l~~l~~~g---~~~~i~Tn~~-~~~-~~~~~~~~l~~~f~~i~~~-----~~--~~-------~~KP~~~ 144 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARG---KKLALLTNSP-RDH-AVLVQELGLRDLFDVVIFS-----GD--VG-------RGKPDPD 144 (183)
T ss_pred CccCcCHHHHHHHHHHCC---CeEEEEeCCc-hHH-HHHHHhcCCHHHCCEEEEc-----CC--CC-------CCCCCHH
Confidence 689999999999999998 9999999986 555 55555466531 122221 00 00 0001245
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeE
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 268 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gv 268 (332)
.++..+...+.. ..++++|||+..|+.+++.+|+..
T Consensus 145 ~~~~~~~~~~~~-~~~~~~vgD~~~di~aA~~~G~~~ 180 (183)
T TIGR01509 145 IYLLALKKLGLK-PEECLFVDDSPAGIEAAKAAGMHT 180 (183)
T ss_pred HHHHHHHHcCCC-cceEEEEcCCHHHHHHHHHcCCEE
Confidence 556666666653 478999999999999999999743
No 60
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=98.81 E-value=1.7e-07 Score=92.62 Aligned_cols=120 Identities=9% Similarity=0.010 Sum_probs=89.6
Q ss_pred HhhhcCCCCHHHHHHHhhcC-------CCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHh-cCCCcceEEee
Q 020024 135 ESGVLKGINLEDIKKAGERL-------SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS-AGLNALNVHAN 206 (332)
Q Consensus 135 ~~~~f~G~~~~~l~~~~~~i-------~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~-~g~~~~~I~aN 206 (332)
-.-.|+|++.+++++.++.+ -+++. .++.++++| .++|+|++. ..+++++++. +|+ ..|+++
T Consensus 69 i~v~f~Gl~~~die~vaRavlpkf~~~dv~~e---~~~~~~~~g----~~vVVTAsP-rvmVEpFake~LG~--D~VvGT 138 (498)
T PLN02499 69 IFVATAGVHESEIESVARAVLPKFYMDDVDME---AWKVFSSCD----KRVVVTRMP-RVMVERFAKEHLRA--DEVIGS 138 (498)
T ss_pred HHHHhCCCCHHHHHHHHHHHhhHHHHhhCCHH---HHHHHHcCC----eEEEEeCCH-HHHHHHHHHHhcCC--ceEEee
Confidence 35789999999998877631 23333 556666554 899999987 8899999987 676 578899
Q ss_pred eeEEcC-ceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 207 EFSFKE-SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 207 ~l~~~~-g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
++++.+ |.+||.+.+.+| +.-|.++++++... ....+-+||+.+|-+.+..+. ++.+.
T Consensus 139 EL~v~~~G~~TG~~~G~n~-~ek~~~rl~~~~g~-----~~~~vg~~~~~~~~~f~~~ck-~~~~~ 197 (498)
T PLN02499 139 ELVVNRFGFATGFIRGTDV-DQSVANRVANLFVD-----ERPQLGLGRISASSSFLSLCK-EQIHP 197 (498)
T ss_pred eEEEeeccEEEEEEecCcc-HHHHHHHHHHHhCc-----cCceecccCCcccchhhhhCc-eEEec
Confidence 999985 999999987655 44457788776531 135789999999999888876 44443
No 61
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.80 E-value=2.6e-08 Score=102.92 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=81.3
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++||++++.+++|++.| ++++++|+.. ......+.++.|++ +++++ +++.+|...+
T Consensus 445 D~~Rp~a~eaI~~l~~~G---i~v~miTGD~-~~ta~~iA~~lGI~--~v~a~-----------------~~PedK~~~v 501 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMG---IKTIMITGDN-RLTAAAIAAEAGVD--DFIAE-----------------ATPEDKIALI 501 (675)
T ss_pred ccchhHHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCC--EEEcC-----------------CCHHHHHHHH
Confidence 389999999999999999 9999999874 78888888888873 34431 3467899999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHh
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVG 280 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~ 280 (332)
+++..+ +..+.++|||.||.|+|..||+||+++++..+++-+
T Consensus 502 ~~lq~~-----g~~VamvGDG~NDapAL~~AdvGiAm~~gt~~akea 543 (675)
T TIGR01497 502 RQEQAE-----GKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEA 543 (675)
T ss_pred HHHHHc-----CCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHh
Confidence 998753 357899999999999999999999999765444443
No 62
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.78 E-value=2.9e-07 Score=81.18 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHH
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNN 235 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~ 235 (332)
..++..++|+.++++| +++.|+|++. ...++..++.+|+.. .+..-+..++ . +. --+...+..
T Consensus 107 ~~~~~~~~L~~l~~~g---~~~~i~T~~~-~~~~~~~l~~~gl~~--~f~~~~~~~~-~--~~--------KP~p~~~~~ 169 (197)
T TIGR01548 107 TLLTPKGLLRELHRAP---KGMAVVTGRP-RKDAAKFLTTHGLEI--LFPVQIWMED-C--PP--------KPNPEPLIL 169 (197)
T ss_pred cccCHHHHHHHHHHcC---CcEEEECCCC-HHHHHHHHHHcCchh--hCCEEEeecC-C--CC--------CcCHHHHHH
Confidence 4455699999999988 9999999985 889999999888632 1211110111 0 00 113445555
Q ss_pred HHHHhCCCCCceEEEEeCCccchHHhhhc
Q 020024 236 TLEKYGTDRKNLSVYIGDSVGDLLCLLEA 264 (332)
Q Consensus 236 ~~~~~~~~~~~~viyiGDs~~Dl~~l~~A 264 (332)
.+...+.. ..++++|||+.+|+.++..|
T Consensus 170 ~~~~~~~~-~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 170 AAKALGVE-ACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHHHhCcC-cccEEEEeCCHHHHHHHHhC
Confidence 56655653 46899999999999988754
No 63
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.78 E-value=1.8e-07 Score=82.96 Aligned_cols=188 Identities=20% Similarity=0.299 Sum_probs=127.1
Q ss_pred EEEeCCCCcccccchHHHHHHHHHhCCCCCCCCCcccccccccccccchhhhhHHHHHHHHHHH---HhhcCCCCcccCC
Q 020024 34 IFSDFDLTCTIVDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELRNTWGLLSKQYTEEYEQC---IESFMPSEKVENF 110 (332)
Q Consensus 34 vi~DFD~TiT~~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~---~~~~~p~~~~~~~ 110 (332)
+++|+.|-++-.|---.++... -|. .+.-++.++ ..++|..+ ++.|.|- .
T Consensus 3 fvtD~EGP~sl~D~A~E~~a~~---~pn-----------------grrfF~~~S--eyDD~la~E~rReGYeaG-----~ 55 (315)
T COG4030 3 FVTDWEGPWSLTDFALELCAAV---FPN-----------------GRRFFSNLS--EYDDYLAYEVRREGYEAG-----Y 55 (315)
T ss_pred ccccCCCCCccchhHHHHHHHH---cCC-----------------HHHHHHhhh--hhhhHHHHHHhccCCCCC-----c
Confidence 7899999999887643333221 111 122333332 12333332 3344442 4
Q ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhhc-CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHH
Q 020024 111 NYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGER-LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLI 189 (332)
Q Consensus 111 ~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~~-i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I 189 (332)
+..=..+|+- -+|++.++++++.+. ..+-||+.+.++.+++. ++-+|+|-++ ..++
T Consensus 56 TLkLivPFL~------------------ahGVt~~dlrr~sE~sa~lvPgA~etm~~l~~~----~tp~v~STSY-~qy~ 112 (315)
T COG4030 56 TLKLIVPFLA------------------AHGVTNRDLRRISELSAKLVPGAEETMATLQER----WTPVVISTSY-TQYL 112 (315)
T ss_pred chhhHHHHHH------------------HhcCcHHHHHHHHHhhcccCCChHHHHHHHhcc----CCceEEeccH-HHHH
Confidence 5556667753 258999999999885 89999999999999875 7888999998 8899
Q ss_pred HHHHHhcCCCcceEEeeeeEEcC-ce-----------------eccc------------cc----c------cCCCCcch
Q 020024 190 RASFSSAGLNALNVHANEFSFKE-SI-----------------STGE------------II----E------KVESPIDK 229 (332)
Q Consensus 190 ~~~l~~~g~~~~~I~aN~l~~~~-g~-----------------~tG~------------~~----~------~~~~~~~K 229 (332)
+......|++--+++|+++.+|+ .+ ..|. +. + +...|..|
T Consensus 113 ~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGgg~k 192 (315)
T COG4030 113 RRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGGGEK 192 (315)
T ss_pred HHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHHHHHHHHHHhhcCHHHHHHHHHhhhhccCcch
Confidence 99988888876789999988873 10 1121 11 1 23445567
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC----eeEEEcCC
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD----IGIVIGSS 273 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad----~gvv~~~~ 273 (332)
.+.++.+..-.+.+ ..++++|||+||..|++.+. ++|+++.+
T Consensus 193 a~i~e~~~ele~~d--~sa~~VGDSItDv~ml~~~rgrGglAvaFNGN 238 (315)
T COG4030 193 AKIMEGYCELEGID--FSAVVVGDSITDVKMLEAARGRGGLAVAFNGN 238 (315)
T ss_pred hHHHHHHHhhcCCC--cceeEecCcccchHHHHHhhccCceEEEecCC
Confidence 78888777655542 34799999999999999973 45777766
No 64
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.74 E-value=1.9e-07 Score=81.37 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=67.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.+.|| .+++..+++ + .+++|+|++. ...++..++.+|+.. ..|++- +.. + ..--+.
T Consensus 86 ~~~~~~~-~e~L~~L~~-~---~~l~I~T~~~-~~~~~~~l~~~~l~~~fd~i~~~-----~~~--~-------~~KP~p 145 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHG-R---RPMAVGTGSE-SAIAEALLAHLGLRRYFDAVVAA-----DDV--Q-------HHKPAP 145 (188)
T ss_pred cCCCccH-HHHHHHHHh-C---CCEEEEcCCc-hHHHHHHHHhCCcHhHceEEEeh-----hhc--c-------CCCCCh
Confidence 4567786 589999875 3 7999999986 889999999888632 122221 110 1 111244
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+.....+.+.. ..+++||||+.+|+.++..||+.++
T Consensus 146 ~~~~~~~~~~~~~-~~~~l~igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 146 DTFLRCAQLMGVQ-PTQCVVFEDADFGIQAARAAGMDAV 183 (188)
T ss_pred HHHHHHHHHcCCC-HHHeEEEeccHhhHHHHHHCCCEEE
Confidence 6677777776653 4789999999999999999998543
No 65
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.74 E-value=3.6e-07 Score=81.94 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=68.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
.+.+.||+.++++.+ + ++++|+|.+- ...++..|+.+|+... + ++.++++.-.+ ..--+...
T Consensus 86 ~~~~~~gv~~~L~~L---~---~~~~ivTn~~-~~~~~~~l~~~~l~~~--F------~~~v~~~~~~~---~~KP~p~~ 147 (221)
T PRK10563 86 ELEPIAGANALLESI---T---VPMCVVSNGP-VSKMQHSLGKTGMLHY--F------PDKLFSGYDIQ---RWKPDPAL 147 (221)
T ss_pred cCCcCCCHHHHHHHc---C---CCEEEEeCCc-HHHHHHHHHhcChHHh--C------cceEeeHHhcC---CCCCChHH
Confidence 478999999999988 3 8999999884 7889999988776321 1 01111111000 01114466
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
+...+.+.+.. ..++++||||.+|+.++..||+.++
T Consensus 148 ~~~a~~~~~~~-p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 148 MFHAAEAMNVN-VENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred HHHHHHHcCCC-HHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 66677777663 4789999999999999999998655
No 66
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.73 E-value=9.9e-08 Score=91.75 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEcc----ccCHHHHHH-----------HHHhcCCCcceEEeeeeEEcCceeccc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSY----CWCGDLIRA-----------SFSSAGLNALNVHANEFSFKESISTGE 218 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~----g~s~~~I~~-----------~l~~~g~~~~~I~aN~l~~~~g~~tG~ 218 (332)
..++||+.++|+.|+++| ++++|+|. |+ ..+++. .++.+|+.. +.+. +...
T Consensus 29 ~~l~pGV~e~L~~Lk~~G---~kL~IvTNq~g~G~-~~~~~~~l~~~~~~i~~iL~~~gl~f-----d~i~-----i~~~ 94 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAG---YKLVMVTNQDGLGT-DSFPQEDFDPPHNLMMQIFESQGIKF-----DEVL-----ICPH 94 (354)
T ss_pred ceECcCHHHHHHHHHhCC---CeEEEEECCccccC-ccccHHHHhhHHHHHHHHHHHcCCce-----eeEE-----EeCC
Confidence 678999999999999988 99999998 33 344444 444444421 1111 1111
Q ss_pred c-cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee-EEEcCC
Q 020024 219 I-IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIGSS 273 (332)
Q Consensus 219 ~-~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-vv~~~~ 273 (332)
. ...+.++..|...+..++...+.. ..+++||||+.+|+.+++.+++. |.+++.
T Consensus 95 ~~sd~~~~rKP~p~~l~~a~~~l~v~-~~~svmIGDs~sDi~aAk~aGi~~I~v~~~ 150 (354)
T PRK05446 95 FPEDNCSCRKPKTGLVEEYLAEGAID-LANSYVIGDRETDVQLAENMGIKGIRYARE 150 (354)
T ss_pred cCcccCCCCCCCHHHHHHHHHHcCCC-cccEEEEcCCHHHHHHHHHCCCeEEEEECC
Confidence 1 112223445667777777665553 47899999999999999999994 445443
No 67
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.73 E-value=5.5e-08 Score=82.09 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccC--------------HHHHHHHHHhcCCCcceEEeeeeEEcCceeccccc
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWC--------------GDLIRASFSSAGLNALNVHANEFSFKESISTGEII 220 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s--------------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~ 220 (332)
.++||+.++++.|+++| +.++|+|.+-. ...+...++.+|+.....+. ........
T Consensus 27 ~~~~g~~~~l~~Lk~~g---~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~~~~- 96 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAG---YTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLF------CPHHPADN- 96 (147)
T ss_pred EEcCChHHHHHHHHHCC---CEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEE------CCCCCCCC-
Confidence 57899999999999999 99999997521 14566677777763111111 11000000
Q ss_pred ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 221 EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 221 ~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
....--|...++..+.+.+.+ ..+++||||+..|+.++..+++-
T Consensus 97 --~~~~KP~~~~~~~~~~~~~~~-~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 97 --CSCRKPKPGLILEALKRLGVD-ASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred --CCCCCCCHHHHHHHHHHcCCC-hHHEEEEcCCHHHHHHHHHCCCC
Confidence 001123567777777777753 47899999999999999999984
No 68
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.70 E-value=9.6e-08 Score=98.96 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=78.2
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++|||+++.++.|++.| ++++++|+-- ..-...+.++.|++ +++| -+++++|.+.+
T Consensus 444 D~~R~~~~eai~~Lr~~G---I~vvMiTGDn-~~TA~aIA~elGId--~v~A-----------------~~~PedK~~iV 500 (679)
T PRK01122 444 DIVKPGIKERFAELRKMG---IKTVMITGDN-PLTAAAIAAEAGVD--DFLA-----------------EATPEDKLALI 500 (679)
T ss_pred ccCchhHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCc--EEEc-----------------cCCHHHHHHHH
Confidence 378999999999999999 9999999863 77778888888873 3333 23567899999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHH
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLR 277 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~ 277 (332)
+++.++ +..+.++|||.||-|+|..||+||+|+.+..++
T Consensus 501 ~~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvA 539 (679)
T PRK01122 501 RQEQAE-----GRLVAMTGDGTNDAPALAQADVGVAMNSGTQAA 539 (679)
T ss_pred HHHHHc-----CCeEEEECCCcchHHHHHhCCEeEEeCCCCHHH
Confidence 988753 346889999999999999999999999664433
No 69
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.68 E-value=1.2e-07 Score=96.97 Aligned_cols=93 Identities=25% Similarity=0.325 Sum_probs=77.0
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
.++|||+.+++++|+++| ++++|+|+.. ...++.+++.+|++ ++++ ..+.+|.+.+
T Consensus 404 d~l~~~a~e~i~~Lk~~G---i~v~ilSgd~-~~~a~~ia~~lgi~---~~~~-----------------~~p~~K~~~v 459 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRG---IEPVMLTGDN-RKTAKAVAKELGIN---VRAE-----------------VLPDDKAALI 459 (562)
T ss_pred ccccHHHHHHHHHHHHcC---CeEEEEcCCC-HHHHHHHHHHcCCc---EEcc-----------------CChHHHHHHH
Confidence 579999999999999999 9999999985 88999999998863 3331 1235799888
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChh
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 275 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~ 275 (332)
+++..+ +.+++|||||.||.+++..||+||.++.+..
T Consensus 460 ~~l~~~-----~~~v~~VGDg~nD~~al~~A~vgia~g~g~~ 496 (562)
T TIGR01511 460 KELQEK-----GRVVAMVGDGINDAPALAQADVGIAIGAGTD 496 (562)
T ss_pred HHHHHc-----CCEEEEEeCCCccHHHHhhCCEEEEeCCcCH
Confidence 887652 3689999999999999999999999996543
No 70
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.68 E-value=3.8e-07 Score=81.14 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=66.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHH--HHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL--IRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~--I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
.+.+.||+.++++.|+++| ++++|+|.++ ... ....+...++.. ..|++.. ..|. ..+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g---~~l~i~Sn~~-~~~~~~~~~~~~~~l~~~fd~v~~s~-------~~~~-~KP------ 153 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKG---FKTACITNNF-PTDHSAEEALLPGDIMALFDAVVESC-------LEGL-RKP------ 153 (211)
T ss_pred ccccChhHHHHHHHHHHCC---CeEEEEeCCC-CccchhhhHhhhhhhHhhCCEEEEee-------ecCC-CCC------
Confidence 5789999999999999998 9999999875 222 111122222210 1222211 0010 001
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEcCChhHHH
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSSSSLRR 278 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~~~~~L~~ 278 (332)
....+...+.+.+.. ..+++||||+..|+.+++.+|+ .|.+.+...+..
T Consensus 154 ~p~~~~~~~~~~g~~-~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~~~~~ 203 (211)
T TIGR02247 154 DPRIYQLMLERLGVA-PEECVFLDDLGSNLKPAAALGITTIKVSDEEQAIH 203 (211)
T ss_pred CHHHHHHHHHHcCCC-HHHeEEEcCCHHHHHHHHHcCCEEEEECCHHHHHH
Confidence 134555556666653 4789999999999999999998 455555544433
No 71
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.68 E-value=3.1e-07 Score=82.17 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=46.7
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHh
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVG 280 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~ 280 (332)
..+.+|...++.+++.++.+ ..+++++|||.||++|++.|++|++|++. +.+++.|
T Consensus 143 ~~~~~K~~~i~~l~~~~~i~-~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A 199 (215)
T TIGR01487 143 KKGVDKGVGVEKLKELLGIK-PEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIA 199 (215)
T ss_pred cCCCChHHHHHHHHHHhCCC-HHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhC
Confidence 45678999999999888764 36899999999999999999999999866 4555554
No 72
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.66 E-value=5.3e-07 Score=79.41 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=60.8
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
+...+.||+.++++.|++.+ +++++|.+- ...-...++.+++.. .+-. .| +.+.++... ..|..
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~----~~~i~Tn~~-~~~~~~~~~~~~l~~--~f~~--~f-~~i~~~~~~------~~kp~ 134 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDY----DFVAVTALG-DSIDALLNRQFNLNA--LFPG--AF-SEVLMCGHD------ESKEK 134 (197)
T ss_pred HhccCCCCHHHHHHHHHhcC----CEEEEeCCc-cchhHHHHhhCCHHH--hCCC--cc-cEEEEeccC------cccHH
Confidence 45679999999999998754 577777642 333332444444321 0000 01 011111111 12556
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhc--CeeEEEc
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA--DIGIVIG 271 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A--d~gvv~~ 271 (332)
.+...+.+.+ ...++|||||.+|+.++..| |+.++.-
T Consensus 135 ~~~~a~~~~~---~~~~v~vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 135 LFIKAKEKYG---DRVVCFVDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred HHHHHHHHhC---CCcEEEeCCCHHHHHHHHHHHcCCcEEEe
Confidence 6666666665 25799999999999999999 9854443
No 73
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.65 E-value=1.5e-07 Score=97.47 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=78.0
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++||++++.+++|++.| ++++++|+- +..-...+.++.|++ ++++ -+++++|.+.+
T Consensus 440 Dp~R~~a~e~I~~Lr~~G---I~vvMiTGD-n~~TA~aIA~elGI~--~v~A-----------------~~~PedK~~iV 496 (673)
T PRK14010 440 DVIKDGLVERFRELREMG---IETVMCTGD-NELTAATIAKEAGVD--RFVA-----------------ECKPEDKINVI 496 (673)
T ss_pred cCCcHHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCc--eEEc-----------------CCCHHHHHHHH
Confidence 389999999999999999 999999986 377777788888873 3333 23567899999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHH
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLR 277 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~ 277 (332)
+++.++ +..+.++|||.||-|+|..||+||+|+.+...+
T Consensus 497 ~~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvA 535 (673)
T PRK14010 497 REEQAK-----GHIVAMTGDGTNDAPALAEANVGLAMNSGTMSA 535 (673)
T ss_pred HHHHhC-----CCEEEEECCChhhHHHHHhCCEEEEeCCCCHHH
Confidence 988753 246889999999999999999999999664433
No 74
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.6e-07 Score=97.60 Aligned_cols=93 Identities=22% Similarity=0.233 Sum_probs=78.7
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++||++++.++.|++.| ++++++|+- +..-.+.+.+++|+ .+++++ ..+.+|.+.+
T Consensus 536 D~~R~~a~~aI~~L~~~G---i~~~mLTGD-n~~~A~~iA~~lGI--d~v~Ae-----------------llPedK~~~V 592 (713)
T COG2217 536 DELRPDAKEAIAALKALG---IKVVMLTGD-NRRTAEAIAKELGI--DEVRAE-----------------LLPEDKAEIV 592 (713)
T ss_pred CCCChhHHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCh--Hhhecc-----------------CCcHHHHHHH
Confidence 489999999999999999 999999976 47888888888887 345552 2356899999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCCh
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 274 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~ 274 (332)
+++.++ +..+.+||||.||-|+|..||+||+|+.+.
T Consensus 593 ~~l~~~-----g~~VamVGDGINDAPALA~AdVGiAmG~Gt 628 (713)
T COG2217 593 RELQAE-----GRKVAMVGDGINDAPALAAADVGIAMGSGT 628 (713)
T ss_pred HHHHhc-----CCEEEEEeCCchhHHHHhhcCeeEeecCCc
Confidence 998853 358999999999999999999999999764
No 75
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.63 E-value=2e-07 Score=81.37 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=62.8
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEcccc-------C-------HHHHHHHHHhcCCCcceEEeeeeEEcCceecccc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW-------C-------GDLIRASFSSAGLNALNVHANEFSFKESISTGEI 219 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~-------s-------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~ 219 (332)
..+.||+.++|++|+++| ++++|+|.+- . ...+...++.+|+....++.... ..+.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g---~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~------~~~~- 97 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAG---YRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPH------HPED- 97 (181)
T ss_pred eEECCCHHHHHHHHHHCC---CEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCC------CCCC-
Confidence 356899999999999998 9999999651 0 13344455555542112221100 0000
Q ss_pred cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 220 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 220 ~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
.....--+...+...+...+.. ..++++|||+.+|+.++..|++.++
T Consensus 98 --~~~~~KP~p~~~~~~~~~l~~~-~~~~~~VgDs~~Di~~A~~aG~~~i 144 (181)
T PRK08942 98 --GCDCRKPKPGMLLSIAERLNID-LAGSPMVGDSLRDLQAAAAAGVTPV 144 (181)
T ss_pred --CCcCCCCCHHHHHHHHHHcCCC-hhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 0001111345555566666653 4789999999999999999998543
No 76
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.60 E-value=7.3e-07 Score=97.20 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC-c--ceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN-A--LNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~-~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
.+.||+.++|++|+++| +++.|+|.+. ...++..++..|+. . ..+++.+ ....+ --+..
T Consensus 161 ~~~pG~~elL~~Lk~~G---~~l~IvSn~~-~~~~~~~L~~~gl~~~~Fd~iv~~~-----~~~~~---------KP~Pe 222 (1057)
T PLN02919 161 IGFPGALELITQCKNKG---LKVAVASSAD-RIKVDANLAAAGLPLSMFDAIVSAD-----AFENL---------KPAPD 222 (1057)
T ss_pred ccCccHHHHHHHHHhCC---CeEEEEeCCc-HHHHHHHHHHcCCChhHCCEEEECc-----ccccC---------CCCHH
Confidence 47899999999999999 9999999886 88889999888763 1 1222211 11001 11345
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee-EEEc
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIG 271 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-vv~~ 271 (332)
.+...+.+.+.. ..+++||||+.+|+.+++.|++- |.+.
T Consensus 223 ~~~~a~~~lgv~-p~e~v~IgDs~~Di~AA~~aGm~~I~v~ 262 (1057)
T PLN02919 223 IFLAAAKILGVP-TSECVVIEDALAGVQAARAAGMRCIAVT 262 (1057)
T ss_pred HHHHHHHHcCcC-cccEEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 555666666653 47899999999999999999984 3343
No 77
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.58 E-value=3.3e-06 Score=78.74 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=61.3
Q ss_pred cEEEEccccCHHHHHHHHHhcCCCcc--eEEeeeeEEcCc---eecccccccCCC---CcchHHHHHHHHHHhCCC-CCc
Q 020024 176 NVHVLSYCWCGDLIRASFSSAGLNAL--NVHANEFSFKES---ISTGEIIEKVES---PIDKVQAFNNTLEKYGTD-RKN 246 (332)
Q Consensus 176 ~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~l~~~~g---~~tG~~~~~~~~---~~~K~~~l~~~~~~~~~~-~~~ 246 (332)
+..+.+++ ..-....+++.|+... --+.+-+.|.++ ..||-+.+.+.. +.+|.++++.++..+... ..-
T Consensus 150 Ep~~w~~~--~~~~~~~~~~~g~~~~~GgRf~H~l~~~~~~~~~~~~~~~~~~~~~~~~~dKg~A~~~L~~~y~~~~~~~ 227 (302)
T PRK12702 150 EIFSYSGD--PARLREAFAQQEANLTQHLLRLHQLHFSDLPQWYLTGWMQPTLAAEPNSLPGEQAVQLLLDCYQRHLGPI 227 (302)
T ss_pred cceEecCC--HHHHHHHHHHcCCeEEecCceEEecccccccccccccccccccccccCCCCHHHHHHHHHHHHHhccCCc
Confidence 33455653 3333667777775311 012222223332 256655555555 789999998887665431 124
Q ss_pred eEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 247 LSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 247 ~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
.+|.+|||.||++||+.||++|++..+
T Consensus 228 ~tiaLGDspND~~mLe~~D~~vvi~~~ 254 (302)
T PRK12702 228 KALGIGCSPPDLAFLRWSEQKVVLPSP 254 (302)
T ss_pred eEEEecCChhhHHHHHhCCeeEEecCC
Confidence 799999999999999999999999755
No 78
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.56 E-value=7.4e-07 Score=81.25 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=60.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccc---cCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYC---WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g---~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
..+.||++++++.++++| +++++||+- -....++.+++.+|++..+.+ .+. ++|.- ....+|.
T Consensus 113 a~p~~Ga~elL~~L~~~G---~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f--~vi-----l~gd~----~~K~~K~ 178 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRG---DSIYFITGRTATKTETVSKTLADDFHIPADNMN--PVI-----FAGDK----PGQYTKT 178 (237)
T ss_pred CcchHHHHHHHHHHHHCC---CeEEEEeCCCCcccHHHHHHHHHHcCCCcccce--eEE-----EcCCC----CCCCCHH
Confidence 568889999999999999 999999972 124566666666787422211 111 22211 1123465
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
..++ ++ ..++||||+.+|+.+++.||+
T Consensus 179 ~~l~----~~-----~i~I~IGDs~~Di~aA~~AGi 205 (237)
T PRK11009 179 QWLK----KK-----NIRIFYGDSDNDITAAREAGA 205 (237)
T ss_pred HHHH----hc-----CCeEEEcCCHHHHHHHHHcCC
Confidence 4443 22 248999999999999999998
No 79
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.53 E-value=7e-06 Score=74.78 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=61.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
.+.+.||+.++|+.|++ + ++++|+|.|- .. ++..|+.. ..|++.. ... ...-+.
T Consensus 111 ~~~~~~gv~~~L~~L~~-~---~~l~i~Tn~~-~~-----~~~~gl~~~fd~i~~~~----------~~~----~~KP~p 166 (238)
T PRK10748 111 RIDVPQATHDTLKQLAK-K---WPLVAITNGN-AQ-----PELFGLGDYFEFVLRAG----------PHG----RSKPFS 166 (238)
T ss_pred cCCCCccHHHHHHHHHc-C---CCEEEEECCC-ch-----HHHCCcHHhhceeEecc----------cCC----cCCCcH
Confidence 57899999999999985 4 7999999874 33 24445421 1222211 110 011144
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCC-ccchHHhhhcCee-EEEc
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADIG-IVIG 271 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~g-vv~~ 271 (332)
..+...+.+.+.. ..++++|||+ ..|+.++..+|+- |.+.
T Consensus 167 ~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~A~~aG~~~i~v~ 208 (238)
T PRK10748 167 DMYHLAAEKLNVP-IGEILHVGDDLTTDVAGAIRCGMQACWIN 208 (238)
T ss_pred HHHHHHHHHcCCC-hhHEEEEcCCcHHHHHHHHHCCCeEEEEc
Confidence 5566666666653 4789999999 5999999999984 4344
No 80
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.52 E-value=5.9e-07 Score=76.51 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=69.6
Q ss_pred HHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCC
Q 020024 163 FFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGT 242 (332)
Q Consensus 163 ~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~ 242 (332)
.+++|+++| +.+.|+|++. ...+...++.+|+. +.+. + ...|...+++++.+.+.
T Consensus 36 ~i~~Lk~~G---~~i~IvTn~~-~~~~~~~l~~~gi~--~~~~-----------~--------~~~k~~~~~~~~~~~~~ 90 (154)
T TIGR01670 36 GIRCALKSG---IEVAIITGRK-AKLVEDRCKTLGIT--HLYQ-----------G--------QSNKLIAFSDILEKLAL 90 (154)
T ss_pred HHHHHHHCC---CEEEEEECCC-CHHHHHHHHHcCCC--EEEe-----------c--------ccchHHHHHHHHHHcCC
Confidence 688899999 9999999986 67888899988874 2222 1 02488888989888776
Q ss_pred CCCceEEEEeCCccchHHhhhcCeeEEEcCCh
Q 020024 243 DRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 274 (332)
Q Consensus 243 ~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~ 274 (332)
. .++++|||||.+|++|+..|++++++++..
T Consensus 91 ~-~~~~~~vGDs~~D~~~~~~ag~~~~v~~~~ 121 (154)
T TIGR01670 91 A-PENVAYIGDDLIDWPVMEKVGLSVAVADAH 121 (154)
T ss_pred C-HHHEEEECCCHHHHHHHHHCCCeEecCCcC
Confidence 3 478999999999999999999999988663
No 81
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.51 E-value=4.3e-07 Score=92.47 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=75.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCCC-cEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNA-NVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~-~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
.-.+|||+.+.+++|+++| + ++.|+|+.. ....+.+++++|++ +++++ ..+.+|..
T Consensus 360 ~d~l~~~~~e~i~~L~~~G---i~~v~vvTgd~-~~~a~~i~~~lgi~--~~f~~-----------------~~p~~K~~ 416 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALG---IEKVVMLTGDR-RAVAERVARELGID--EVHAE-----------------LLPEDKLE 416 (536)
T ss_pred eccchHHHHHHHHHHHHcC---CCcEEEEcCCC-HHHHHHHHHHcCCh--hhhhc-----------------cCcHHHHH
Confidence 3589999999999999999 9 999999985 88999999998873 22221 12357988
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
.++++..+ ..+++|+|||.||+++++.||+|+.++
T Consensus 417 ~i~~l~~~-----~~~v~~vGDg~nD~~al~~A~vgia~g 451 (536)
T TIGR01512 417 IVKELREK-----YGPVAMVGDGINDAPALAAADVGIAMG 451 (536)
T ss_pred HHHHHHhc-----CCEEEEEeCCHHHHHHHHhCCEEEEeC
Confidence 88887643 358999999999999999999999998
No 82
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.50 E-value=6.2e-07 Score=96.04 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=80.2
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEe-eeeEE-cCceecc-----cccccCCCC
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHA-NEFSF-KESISTG-----EIIEKVESP 226 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~a-N~l~~-~~g~~tG-----~~~~~~~~~ 226 (332)
-++||++++.++.|++.| +++.++|+- +..-...+.++.|+...+++. .++.- ++..+.. .+.. -.++
T Consensus 514 Dp~R~~~~~aI~~l~~aG---I~vvmiTGD-~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfA-r~~P 588 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNG---INVKVLTGD-NEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFA-RLTP 588 (867)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEEcCC-CHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEE-ECCH
Confidence 489999999999999999 999999986 366777777888874322322 11110 0000000 0011 2567
Q ss_pred cchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHH
Q 020024 227 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLR 277 (332)
Q Consensus 227 ~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~ 277 (332)
.+|.+.++.+.++ +..+.++|||.||.|+|+.||+||+++.+..++
T Consensus 589 e~K~~iV~~lq~~-----G~vVam~GDGvNDapALk~AdVGIAmg~gtdvA 634 (867)
T TIGR01524 589 MQKSRIIGLLKKA-----GHTVGFLGDGINDAPALRKADVGISVDTAADIA 634 (867)
T ss_pred HHHHHHHHHHHhC-----CCEEEEECCCcccHHHHHhCCEEEEeCCccHHH
Confidence 8999999987643 357889999999999999999999999654433
No 83
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.47 E-value=6.7e-06 Score=74.22 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=69.0
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 151 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 151 ~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
...+.+.||+.+++..|+++| +++.+.|++. ...++..|...|+... -....+.+....|+..|.
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~---i~~avaS~s~-~~~~~~~L~~~gl~~~---f~~~v~~~dv~~~KP~Pd-------- 146 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARG---IPLAVASSSP-RRAAERVLARLGLLDY---FDVIVTADDVARGKPAPD-------- 146 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcC---CcEEEecCCh-HHHHHHHHHHccChhh---cchhccHHHHhcCCCCCH--------
Confidence 346899999999999999998 9999999874 7789999988776320 011111112222222221
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
-++. -..+.+. ...++|.|.||.+.+.+.+.|+.-++.-
T Consensus 147 ~yL~-Aa~~Lgv-~P~~CvviEDs~~Gi~Aa~aAGm~vv~v 185 (221)
T COG0637 147 IYLL-AAERLGV-DPEECVVVEDSPAGIQAAKAAGMRVVGV 185 (221)
T ss_pred HHHH-HHHHcCC-ChHHeEEEecchhHHHHHHHCCCEEEEe
Confidence 1222 2223333 2479999999999999999999854444
No 84
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.43 E-value=9.6e-07 Score=94.91 Aligned_cols=114 Identities=16% Similarity=0.225 Sum_probs=79.8
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEE-eeeeEE-cCceecc-----cccccCCCC
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVH-ANEFSF-KESISTG-----EIIEKVESP 226 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~-aN~l~~-~~g~~tG-----~~~~~~~~~ 226 (332)
-++||++++.++.|++.| ++++++|+- +..-...+.++.|+....++ +.++.- ++.-+.. .+. .-+++
T Consensus 549 Dp~R~~a~~aI~~l~~aG---I~v~miTGD-~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~Vf-Ar~sP 623 (903)
T PRK15122 549 DPPKESAAPAIAALRENG---VAVKVLTGD-NPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVF-AKLTP 623 (903)
T ss_pred CccHHHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEE-EEeCH
Confidence 489999999999999999 999999986 36777777788887422222 111110 0000000 011 12467
Q ss_pred cchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHH
Q 020024 227 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLR 277 (332)
Q Consensus 227 ~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~ 277 (332)
.+|.+.++.+.++ +..|.++|||.||.|+|+.||+||+++.+..++
T Consensus 624 e~K~~iV~~Lq~~-----G~vVamtGDGvNDaPALk~ADVGIAmg~gtdvA 669 (903)
T PRK15122 624 LQKSRVLKALQAN-----GHTVGFLGDGINDAPALRDADVGISVDSGADIA 669 (903)
T ss_pred HHHHHHHHHHHhC-----CCEEEEECCCchhHHHHHhCCEEEEeCcccHHH
Confidence 7999999988753 357889999999999999999999999654443
No 85
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.43 E-value=1.2e-06 Score=94.09 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=79.6
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEe-eeeEE-cCceec-----ccccccCCCC
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHA-NEFSF-KESIST-----GEIIEKVESP 226 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~a-N~l~~-~~g~~t-----G~~~~~~~~~ 226 (332)
-++||++++.++.|++.| +.+.++|+- +..-...+.++.|+....+++ .+++- ++.-.. -.+.. -.++
T Consensus 549 Dp~R~~a~~aI~~l~~aG---I~v~miTGD-~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfA-r~sP 623 (902)
T PRK10517 549 DPPKETTAPALKALKASG---VTVKILTGD-SELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFA-RLTP 623 (902)
T ss_pred CcchhhHHHHHHHHHHCC---CEEEEEcCC-CHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEE-EcCH
Confidence 478999999999999999 999999986 367777778888874322322 11110 000000 00111 2567
Q ss_pred cchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChh
Q 020024 227 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 275 (332)
Q Consensus 227 ~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~ 275 (332)
.+|.+.++.+.++ +..|.++|||.||.|+|+.||+||+++.+..
T Consensus 624 e~K~~IV~~Lq~~-----G~vVam~GDGvNDaPALk~ADVGIAmg~gtd 667 (902)
T PRK10517 624 MHKERIVTLLKRE-----GHVVGFMGDGINDAPALRAADIGISVDGAVD 667 (902)
T ss_pred HHHHHHHHHHHHC-----CCEEEEECCCcchHHHHHhCCEEEEeCCcCH
Confidence 8999999988753 3578899999999999999999999996543
No 86
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.43 E-value=1.3e-06 Score=92.37 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=79.3
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEE-eeeeEEcC--ceec-cc---------cc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVH-ANEFSFKE--SIST-GE---------II 220 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~-aN~l~~~~--g~~t-G~---------~~ 220 (332)
-++||++++.++.|++.| ++++++|+- +......+.++.|+.. .++ ++++.-.+ ...+ .+ +.
T Consensus 441 Dp~R~~a~~aI~~l~~aG---I~v~miTGD-~~~tA~~IA~~lGI~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 441 DPPRHDTKETIERARHLG---VEVKMVTGD-HLAIAKETARRLGLGT-NIYTADVLLKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred CCChhhHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCC-CCcCHHHhcCCcchhhCCHHHHHHHHHhCCEE
Confidence 389999999999999999 999999986 4778888888888743 122 11111000 0000 00 11
Q ss_pred ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChh
Q 020024 221 EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 275 (332)
Q Consensus 221 ~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~ 275 (332)
--.++.+|.+.++.+..+ +..|.++|||.||.|+|+.||+||+++.+..
T Consensus 516 -Ar~~Pe~K~~iV~~lq~~-----G~~VamvGDGvNDapAL~~AdVGIAm~~gtd 564 (755)
T TIGR01647 516 -AEVFPEHKYEIVEILQKR-----GHLVGMTGDGVNDAPALKKADVGIAVAGATD 564 (755)
T ss_pred -EecCHHHHHHHHHHHHhc-----CCEEEEEcCCcccHHHHHhCCeeEEecCCcH
Confidence 124667999999987642 3578899999999999999999999986543
No 87
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.41 E-value=1.1e-06 Score=76.44 Aligned_cols=110 Identities=5% Similarity=-0.032 Sum_probs=66.5
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcc-eEEeeeeEEcCceecccccccCCCCcchH
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL-NVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~-~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
..+.++||+.++++.|+++| +++.|+|.+-...++..++..+++... .-+...-.| +.++++.- ....|.
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G---~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~F-d~iv~~~~-----~~~~kp 112 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAG---TYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLF-DDRIEIYK-----PNKAKQ 112 (174)
T ss_pred CEEEEcccHHHHHHHHHHCC---CEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhc-eeeeeccC-----CchHHH
Confidence 35789999999999999999 999999976226788888887775300 000000001 11111110 011121
Q ss_pred --HHHHHHHHHh--CCCCCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 231 --QAFNNTLEKY--GTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 231 --~~l~~~~~~~--~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
..++.+.... +. ...+++|||||..|+.++..|++.++..
T Consensus 113 ~~~i~~~~~~~~~~gl-~p~e~l~VgDs~~di~aA~~aGi~~i~v 156 (174)
T TIGR01685 113 LEMILQKVNKVDPSVL-KPAQILFFDDRTDNVREVWGYGVTSCYC 156 (174)
T ss_pred HHHHHHHhhhcccCCC-CHHHeEEEcChhHhHHHHHHhCCEEEEc
Confidence 1222222211 23 2479999999999999999999855544
No 88
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.41 E-value=1.2e-06 Score=92.48 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=76.8
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++|||+.+.++.|++.| ++++++|+- +....+.+.+++|++ .+++ ..+.+|...+
T Consensus 567 d~~r~~a~~~i~~L~~~g---i~~~llTGd-~~~~a~~ia~~lgi~---~~~~-----------------~~p~~K~~~v 622 (741)
T PRK11033 567 DTLRADARQAISELKALG---IKGVMLTGD-NPRAAAAIAGELGID---FRAG-----------------LLPEDKVKAV 622 (741)
T ss_pred cCCchhHHHHHHHHHHCC---CEEEEEcCC-CHHHHHHHHHHcCCC---eecC-----------------CCHHHHHHHH
Confidence 589999999999999999 999999987 488888888988863 2221 2345899999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHH
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLR 277 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~ 277 (332)
+++.. ...+.++|||.||.++|..||+||+++.+....
T Consensus 623 ~~l~~------~~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a 660 (741)
T PRK11033 623 TELNQ------HAPLAMVGDGINDAPAMKAASIGIAMGSGTDVA 660 (741)
T ss_pred HHHhc------CCCEEEEECCHHhHHHHHhCCeeEEecCCCHHH
Confidence 88763 147999999999999999999999999664433
No 89
>PLN02811 hydrolase
Probab=98.39 E-value=4.8e-06 Score=74.84 Aligned_cols=101 Identities=9% Similarity=0.135 Sum_probs=62.2
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHH-HHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRA-SFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~-~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
....+.||+.++|+.|+++| +++.|+|++. ...+.. .++..++.. ..+++.+ +...-.++ -
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g---~~~~i~S~~~-~~~~~~~~~~~~~l~~~f~~i~~~~---~~~~~~~K---------P 138 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKG---IPIAIATGSH-KRHFDLKTQRHGELFSLMHHVVTGD---DPEVKQGK---------P 138 (220)
T ss_pred hhCCCCccHHHHHHHHHHCC---CcEEEEeCCc-hhhHHHHHcccHHHHhhCCEEEECC---hhhccCCC---------C
Confidence 35788999999999999998 9999999875 443333 222223211 1233311 00000011 1
Q ss_pred hHHHHHHHHHHhC---CCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 229 KVQAFNNTLEKYG---TDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 229 K~~~l~~~~~~~~---~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
+...+...+.+.+ . ...+++||||+..|+.+++.|++.++
T Consensus 139 ~p~~~~~a~~~~~~~~~-~~~~~v~IgDs~~di~aA~~aG~~~i 181 (220)
T PLN02811 139 APDIFLAAARRFEDGPV-DPGKVLVFEDAPSGVEAAKNAGMSVV 181 (220)
T ss_pred CcHHHHHHHHHhCCCCC-CccceEEEeccHhhHHHHHHCCCeEE
Confidence 2234444454443 3 24789999999999999999998443
No 90
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.37 E-value=2.4e-06 Score=87.43 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=77.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
+-.+|||+.+.+++|+++|. +++.|+|+.- ....+.+++++|++ +++++ ..+.+|...
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~--i~v~ivTgd~-~~~a~~i~~~lgi~--~~f~~-----------------~~p~~K~~~ 439 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGG--IKLVMLTGDN-RSAAEAVAAELGID--EVHAE-----------------LLPEDKLAI 439 (556)
T ss_pred cccchHhHHHHHHHHHHcCC--CeEEEEeCCC-HHHHHHHHHHhCCC--eeecc-----------------CCHHHHHHH
Confidence 36899999999999997541 7899999885 88999999998873 33331 123579888
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHH
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRR 278 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~ 278 (332)
++++... +.+++|+|||.||.+++..||+|+.++....+.+
T Consensus 440 v~~l~~~-----~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~ 480 (556)
T TIGR01525 440 VKELQEE-----GGVVAMVGDGINDAPALAAADVGIAMGAGSDVAI 480 (556)
T ss_pred HHHHHHc-----CCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHH
Confidence 8887642 3589999999999999999999999996544433
No 91
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.37 E-value=1.9e-06 Score=92.09 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++|||+.+.++.+++.| +++.++|+.- ....+.+++.+|++ +++++ ..+.+|.+.+
T Consensus 649 d~~r~~a~~~i~~L~~~g---i~v~~~Tgd~-~~~a~~ia~~lgi~--~~~~~-----------------~~p~~K~~~i 705 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAG---YRLVMLTGDN-PTTANAIAKEAGID--EVIAG-----------------VLPDGKAEAI 705 (834)
T ss_pred CcchhhHHHHHHHHHHCC---CeEEEEcCCC-HHHHHHHHHHcCCC--EEEeC-----------------CCHHHHHHHH
Confidence 478999999999999999 9999999874 78888888888873 33331 1134699999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCCh
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 274 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~ 274 (332)
+++..+ ..++++||||.||.+++..||+||++++..
T Consensus 706 ~~l~~~-----~~~v~~vGDg~nD~~al~~Agvgia~g~g~ 741 (834)
T PRK10671 706 KRLQSQ-----GRQVAMVGDGINDAPALAQADVGIAMGGGS 741 (834)
T ss_pred HHHhhc-----CCEEEEEeCCHHHHHHHHhCCeeEEecCCC
Confidence 887642 358999999999999999999999998764
No 92
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.34 E-value=2.3e-06 Score=75.00 Aligned_cols=85 Identities=18% Similarity=0.356 Sum_probs=66.1
Q ss_pred HHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCC
Q 020024 164 FQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTD 243 (332)
Q Consensus 164 l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~ 243 (332)
++.++++| +++.|+|+.. ...+..+++.+|+. +++. | ...|...+++++...+..
T Consensus 57 i~~L~~~G---i~v~I~T~~~-~~~v~~~l~~lgl~--~~f~-----------g--------~~~k~~~l~~~~~~~gl~ 111 (183)
T PRK09484 57 IRCLLTSG---IEVAIITGRK-SKLVEDRMTTLGIT--HLYQ-----------G--------QSNKLIAFSDLLEKLAIA 111 (183)
T ss_pred HHHHHHCC---CEEEEEeCCC-cHHHHHHHHHcCCc--eeec-----------C--------CCcHHHHHHHHHHHhCCC
Confidence 45566678 9999999885 78889999988763 2221 1 234888899998888763
Q ss_pred CCceEEEEeCCccchHHhhhcCeeEEEcCCh
Q 020024 244 RKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 274 (332)
Q Consensus 244 ~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~ 274 (332)
..+++|||||.+|+.++..|++++++++..
T Consensus 112 -~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~ 141 (183)
T PRK09484 112 -PEQVAYIGDDLIDWPVMEKVGLSVAVADAH 141 (183)
T ss_pred -HHHEEEECCCHHHHHHHHHCCCeEecCChh
Confidence 478999999999999999999998776443
No 93
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.34 E-value=2.2e-06 Score=74.23 Aligned_cols=91 Identities=14% Similarity=0.289 Sum_probs=69.3
Q ss_pred HHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCC
Q 020024 164 FQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTD 243 (332)
Q Consensus 164 l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~ 243 (332)
++.|+++| +++.|+|.+. ...++..++.+|+. +++. + . ..|...++.++...+..
T Consensus 43 ~~~L~~~G---i~laIiT~k~-~~~~~~~l~~lgi~--~~f~-------~-----~-------kpkp~~~~~~~~~l~~~ 97 (169)
T TIGR02726 43 VIVLQLCG---IDVAIITSKK-SGAVRHRAEELKIK--RFHE-------G-----I-------KKKTEPYAQMLEEMNIS 97 (169)
T ss_pred HHHHHHCC---CEEEEEECCC-cHHHHHHHHHCCCc--EEEe-------c-----C-------CCCHHHHHHHHHHcCcC
Confidence 45567778 9999999985 88999999998873 2221 0 0 14677888888877753
Q ss_pred CCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHh
Q 020024 244 RKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVG 280 (332)
Q Consensus 244 ~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~ 280 (332)
..+++||||+.||+.|++.|++++++.+. +.++..|
T Consensus 98 -~~ev~~iGD~~nDi~~~~~ag~~~am~nA~~~lk~~A 134 (169)
T TIGR02726 98 -DAEVCYVGDDLVDLSMMKRVGLAVAVGDAVADVKEAA 134 (169)
T ss_pred -HHHEEEECCCHHHHHHHHHCCCeEECcCchHHHHHhC
Confidence 47899999999999999999999999865 4454444
No 94
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.34 E-value=2.3e-06 Score=92.55 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEE-eeeeEE-cCceec---c--cccccCC
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVH-ANEFSF-KESIST---G--EIIEKVE 224 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~-aN~l~~-~~g~~t---G--~~~~~~~ 224 (332)
-++||++++.++.|++.| +++.++|+- ...-...+.++.|+.. ..++ +.++.- .+..+. . .+- .-+
T Consensus 578 Dplr~~~~~aI~~l~~aG---I~v~miTGD-~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vf-ar~ 652 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAG---ITVRMVTGD-NIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVL-ARS 652 (941)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEECCC-ChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEE-EEC
Confidence 389999999999999999 999999986 3677777778888732 1111 111110 000000 0 011 125
Q ss_pred CCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc-CChhH
Q 020024 225 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSL 276 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~-~~~~L 276 (332)
++.+|.+.++.+.+. +..+.++|||.||.|+|+.||+||+++ .+...
T Consensus 653 sPe~K~~iV~~lq~~-----g~vVam~GDGvNDapALk~AdVGIAmg~~gtdv 700 (941)
T TIGR01517 653 SPLDKQLLVLMLKDM-----GEVVAVTGDGTNDAPALKLADVGFSMGISGTEV 700 (941)
T ss_pred CHHHHHHHHHHHHHC-----CCEEEEECCCCchHHHHHhCCcceecCCCccHH
Confidence 677999999987753 357889999999999999999999998 44333
No 95
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.33 E-value=2.1e-06 Score=93.62 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=78.1
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEE-cCceeccccc------------
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSF-KESISTGEII------------ 220 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~-~~g~~tG~~~------------ 220 (332)
-++||++++.++.|++.| +.+.+||+-- ......+.++.|+.....+.+.-+. ++.+.+|.-.
T Consensus 645 Dp~r~~v~~aI~~l~~aG---Ikv~MiTGD~-~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAG---INVHMLTGDF-PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred cCCchhHHHHHHHHHHCC---CEEEEECCCC-HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 389999999999999999 9999999874 7778888888887322111111000 1112333111
Q ss_pred -----ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 221 -----EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 221 -----~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
-.-+++.+|.+.++.+... +..+.++|||.||.+||+.||+||+++
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~-----g~~Vam~GDGvNDapaLk~AdVGIAmg 771 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRR-----KAFCAMTGDGVNDSPSLKMANVGIAMG 771 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhc-----CCeeEEeCCCcchHHHHHhCCccEecC
Confidence 0124667899999987653 357889999999999999999999997
No 96
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.27 E-value=1.1e-05 Score=69.09 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccc-c-CHHHHHHHHHh-----cCCCcceEEeeeeEEcCceecccccccCCC--C
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYC-W-CGDLIRASFSS-----AGLNALNVHANEFSFKESISTGEIIEKVES--P 226 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g-~-s~~~I~~~l~~-----~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~--~ 226 (332)
+.|+..++++.++++| ++++++|+- | .....+.++.. ++++.-.++++. |.....+.+.+.. .
T Consensus 28 ~~~~~~~a~~~l~~~G---~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~-----g~~~~~~~~e~i~~~~ 99 (157)
T smart00775 28 THPGVAKLYRDIQNNG---YKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSP-----DRLFAALHREVISKKP 99 (157)
T ss_pred CCHHHHHHHHHHHHcC---CeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcC-----CcchhhhhcccccCCH
Confidence 3588889999999999 999999984 1 01223466655 345433555432 2111111111111 1
Q ss_pred c-chHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 227 I-DKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 227 ~-~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
. =|...++++...+......-+..+||..+|..+-..+++
T Consensus 100 ~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi 140 (157)
T smart00775 100 EVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGI 140 (157)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCC
Confidence 1 277888887764432111234458999999999999987
No 97
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.27 E-value=6.6e-06 Score=71.45 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=69.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccC--------------HHHHHHHHHhcCCCcceEEeeeeEEcCceeccc
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWC--------------GDLIRASFSSAGLNALNVHANEFSFKESISTGE 218 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s--------------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~ 218 (332)
++.+.||+.++|++|+++| ++++|+|.+.. ..++...+..+++....++....... + .+.
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G---~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~--~~~ 97 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMG---YALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPE-G--VEE 97 (176)
T ss_pred HeEECCCHHHHHHHHHHCC---CEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCc-c--ccc
Confidence 3568899999999999999 99999997631 13444556655554223322111000 0 111
Q ss_pred ccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeE
Q 020024 219 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 268 (332)
Q Consensus 219 ~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gv 268 (332)
+......+--+...+...+.+.+.+ ..++++|||+.+|+.++..|++..
T Consensus 98 ~~~~~~~~KP~p~~~~~a~~~~~~~-~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 98 FRQVCDCRKPKPGMLLQARKELHID-MAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred ccCCCCCCCCCHHHHHHHHHHcCcC-hhhEEEEcCCHHHHHHHHHCCCcE
Confidence 2111222223556777777777663 478999999999999999999854
No 98
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.27 E-value=4.8e-06 Score=89.60 Aligned_cols=108 Identities=14% Similarity=0.231 Sum_probs=75.8
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcc--eE-EeeeeEE-cCceec---c--cccccCCC
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NV-HANEFSF-KESIST---G--EIIEKVES 225 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I-~aN~l~~-~~g~~t---G--~~~~~~~~ 225 (332)
++|||+++.++.|++.| +++.++|+- +......+.+..|+... .+ -+.++.- ++.... . .+. .-..
T Consensus 528 p~r~~~~~~i~~l~~~G---i~v~miTGD-~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vf-ar~~ 602 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGG---VRIIMITGD-SQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVF-ARAS 602 (884)
T ss_pred cchhHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEE-EECC
Confidence 78999999999999999 999999987 47788888888887321 11 1111110 000000 0 000 1145
Q ss_pred CcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcC
Q 020024 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 272 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~ 272 (332)
+.+|...++.+... +..+.++|||.||.++++.||+||.++.
T Consensus 603 P~~K~~iv~~lq~~-----g~~v~mvGDGvND~pAl~~AdVGia~g~ 644 (884)
T TIGR01522 603 PEHKMKIVKALQKR-----GDVVAMTGDGVNDAPALKLADIGVAMGQ 644 (884)
T ss_pred HHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHHhCCeeEecCC
Confidence 67899998877642 3578899999999999999999999973
No 99
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.24 E-value=1.1e-05 Score=66.41 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccC-------HHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCc
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWC-------GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPI 227 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s-------~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~ 227 (332)
.++||+.++++.|+++| ++++|+|.+.. ...++..++.+++....++ .++... .
T Consensus 25 ~~~~~v~~~l~~L~~~g---~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~~------K 85 (132)
T TIGR01662 25 ILYPEVPDALAELKEAG---YKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLY----------ACPHCR------K 85 (132)
T ss_pred eeCCCHHHHHHHHHHCC---CEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEE----------ECCCCC------C
Confidence 57899999999999999 99999998730 4678888888776421111 111011 1
Q ss_pred chHHHHHHHHHHh-CCCCCceEEEEeC-CccchHHhhhcCe-eEEEc
Q 020024 228 DKVQAFNNTLEKY-GTDRKNLSVYIGD-SVGDLLCLLEADI-GIVIG 271 (332)
Q Consensus 228 ~K~~~l~~~~~~~-~~~~~~~viyiGD-s~~Dl~~l~~Ad~-gvv~~ 271 (332)
-|...++.++... +. ...+++|||| +.+|+.++..+++ .|.++
T Consensus 86 P~~~~~~~~~~~~~~~-~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 86 PKPGMFLEALKRFNEI-DPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CChHHHHHHHHHcCCC-ChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 1556777777776 35 3578999999 7999999999998 44443
No 100
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.23 E-value=6.1e-06 Score=71.04 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=57.3
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 151 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 151 ~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
...+.++||+.++|+. +.|+|.+ +..++...++.+|+.. ..|++.+ . .|.. . -
T Consensus 86 ~~~~~~~~g~~~~L~~----------~~i~Tn~-~~~~~~~~l~~~~l~~~fd~v~~~~-----~--~~~~-K------P 140 (175)
T TIGR01493 86 YKNLPPWPDSAAALAR----------VAILSNA-SHWAFDQFAQQAGLPWYFDRAFSVD-----T--VRAY-K------P 140 (175)
T ss_pred HhcCCCCCchHHHHHH----------HhhhhCC-CHHHHHHHHHHCCCHHHHhhhccHh-----h--cCCC-C------C
Confidence 3467899999999982 5688987 5889999998887632 1122211 0 0100 0 1
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhc
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 264 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A 264 (332)
........+.+.+.. ..++++||||..|+.+++.+
T Consensus 141 ~p~~f~~~~~~~~~~-p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 141 DPVVYELVFDTVGLP-PDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred CHHHHHHHHHHHCCC-HHHeEeEecChhhHHHHhcC
Confidence 234445555555653 47899999999999887653
No 101
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.21 E-value=3.8e-05 Score=69.38 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=67.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc-ceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA-LNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~-~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
...++||+.++|+.++++| ++++|+|.+ +....+..++..+... ...+..- |+. ..| .--+..
T Consensus 93 ~~~lypgv~e~L~~Lk~~G---~~l~I~Sn~-s~~~~~~~~~~~~~~~L~~~f~~~--fd~--~~g--------~KP~p~ 156 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLG---LRLAVYSSG-SVPAQKLLFGHSDAGNLTPYFSGY--FDT--TVG--------LKTEAQ 156 (220)
T ss_pred ccCcCcCHHHHHHHHHHCC---CEEEEEeCC-CHHHHHHHHhhccccchhhhcceE--EEe--Ccc--------cCCCHH
Confidence 4679999999999999999 999999988 5777776665532100 1111111 111 011 112445
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeE
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGI 268 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gv 268 (332)
.+..++.+.+.. ..+++||||+..|+.+++.||+..
T Consensus 157 ~y~~i~~~lgv~-p~e~lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 157 SYVKIAGQLGSP-PREILFLSDIINELDAARKAGLHT 192 (220)
T ss_pred HHHHHHHHhCcC-hhHEEEEeCCHHHHHHHHHcCCEE
Confidence 666677777663 478999999999999999999843
No 102
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.20 E-value=6e-06 Score=67.38 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=68.9
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHH
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFN 234 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~ 234 (332)
.+.+...+.++.|.+- +.++|-|+-- .-++...++-.|++...+++ | .....|...++
T Consensus 30 klf~ev~e~iqeL~d~----V~i~IASgDr-~gsl~~lae~~gi~~~rv~a-----------~------a~~e~K~~ii~ 87 (152)
T COG4087 30 KLFSEVSETIQELHDM----VDIYIASGDR-KGSLVQLAEFVGIPVERVFA-----------G------ADPEMKAKIIR 87 (152)
T ss_pred EEcHhhHHHHHHHHHh----heEEEecCCc-chHHHHHHHHcCCceeeeec-----------c------cCHHHHHHHHH
Confidence 5777788899999875 7999999874 77888887777765333332 1 11235888888
Q ss_pred HHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcC
Q 020024 235 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 272 (332)
Q Consensus 235 ~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~ 272 (332)
++.++ ++.+++||||.||.++|+.||+||+.-.
T Consensus 88 eLkk~-----~~k~vmVGnGaND~laLr~ADlGI~tiq 120 (152)
T COG4087 88 ELKKR-----YEKVVMVGNGANDILALREADLGICTIQ 120 (152)
T ss_pred HhcCC-----CcEEEEecCCcchHHHhhhcccceEEec
Confidence 87753 5789999999999999999999987654
No 103
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.17 E-value=7.5e-06 Score=88.41 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCce---ecc--------c-c
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESI---STG--------E-I 219 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~---~tG--------~-~ 219 (332)
-++||++++.++.|++.| +++.++|+- +......+.+..|+.. ..+... .+.+.. ... + .
T Consensus 536 Dplr~~v~e~I~~l~~aG---I~v~miTGD-~~~tA~~ia~~~gi~~~~~~v~~~--~~~g~~l~~~~~~~~~~~~~~~~ 609 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAG---IRVIMITGD-NKETAEAICRRIGIFSPDEDVTFK--SFTGREFDEMGPAKQRAACRSAV 609 (917)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEecCC-CHHHHHHHHHHcCCCCCCccccce--eeeHHHHhhCCHHHHHHhhhcCe
Confidence 379999999999999999 999999976 3677888888888732 111110 011100 000 0 0
Q ss_pred cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhH
Q 020024 220 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSL 276 (332)
Q Consensus 220 ~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L 276 (332)
...-+++.+|.+.++.+.. . +..+.++|||.||.+|++.||+||+++.+...
T Consensus 610 v~ar~~P~~K~~iV~~lq~-~----g~~va~iGDG~ND~~alk~AdVGia~g~g~~~ 661 (917)
T TIGR01116 610 LFSRVEPSHKSELVELLQE-Q----GEIVAMTGDGVNDAPALKKADIGIAMGSGTEV 661 (917)
T ss_pred EEEecCHHHHHHHHHHHHh-c----CCeEEEecCCcchHHHHHhCCeeEECCCCcHH
Confidence 0012345689888886653 2 35677899999999999999999999855433
No 104
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.16 E-value=1.3e-05 Score=68.92 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEcccc--------------CHHHHHHHHHhcCCCcceEE-eeeeEEcCceeccc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCW--------------CGDLIRASFSSAGLNALNVH-ANEFSFKESISTGE 218 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~--------------s~~~I~~~l~~~g~~~~~I~-aN~l~~~~g~~tG~ 218 (332)
+.+.||+.++|++|+++| ++++|+|..- ....+...++.+|+....++ |-. ..++
T Consensus 28 ~~~~pgv~e~L~~L~~~g---~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~------~~~~- 97 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAG---YKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPH------FPDD- 97 (161)
T ss_pred eeECCCHHHHHHHHHHCC---CeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCC------CCCC-
Confidence 578999999999999999 9999999731 13567778888886411222 200 0001
Q ss_pred ccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee-EEEcCC
Q 020024 219 IIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIGSS 273 (332)
Q Consensus 219 ~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-vv~~~~ 273 (332)
.....--|...+..++...+.. .++++||||+.+|+.++..+++. +.+...
T Consensus 98 ---~~~~~KP~~~~~~~~~~~~~~~-~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~ 149 (161)
T TIGR01261 98 ---NCDCRKPKIKLLEPYLKKNLID-KARSYVIGDRETDMQLAENLGIRGIQYDEE 149 (161)
T ss_pred ---CCCCCCCCHHHHHHHHHHcCCC-HHHeEEEeCCHHHHHHHHHCCCeEEEEChh
Confidence 1111122556777777766653 47899999999999999999984 445443
No 105
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.14 E-value=4.4e-05 Score=70.82 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=71.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
...+.||+.+|++.++++| .+++|||..- +.......|+.+|++.. .-..+...++ ...|.
T Consensus 116 ~a~~ipGA~e~L~~L~~~G---~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~--~~d~lllr~~------------~~~K~ 178 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKG---VKIFYVSNRSEKEKAATLKNLKRFGFPQA--DEEHLLLKKD------------KSSKE 178 (266)
T ss_pred CCCcCccHHHHHHHHHHCC---CeEEEEeCCCcchHHHHHHHHHHcCcCCC--CcceEEeCCC------------CCCcH
Confidence 4668899999999999999 9999999863 13344466777787531 0011111110 12476
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc--CChhHHHHhHhcCCeeeecCc
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG--SSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~--~~~~L~~~~~~~~~~~~p~~~ 292 (332)
.+.+.+.+. +.-+++|||..+|+......+ . -. ....+.+....+|-+|+-|-.
T Consensus 179 ~rr~~I~~~-----y~Ivl~vGD~~~Df~~~~~~~--~-~~~~r~~~v~~~~~~fG~~~i~lPN 234 (266)
T TIGR01533 179 SRRQKVQKD-----YEIVLLFGDNLLDFDDFFYKD--K-ESQDRQALVLQNQEKFGKKFIILPN 234 (266)
T ss_pred HHHHHHHhc-----CCEEEEECCCHHHhhhhhccC--c-chHHHHHHHHHHHHHhCCCeEEecC
Confidence 666655543 245889999999996433322 1 11 223466777888877775544
No 106
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.14 E-value=1.3e-05 Score=83.63 Aligned_cols=93 Identities=22% Similarity=0.258 Sum_probs=77.0
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++||++...+..|++.| ++++++|+-- ..-.+.+.++.|+ ..|+|+- .+.+|.+.+
T Consensus 722 D~vr~~a~~av~~Lk~~G---i~v~mLTGDn-~~aA~svA~~VGi--~~V~aev-----------------~P~~K~~~I 778 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMG---IKVVMLTGDN-DAAARSVAQQVGI--DNVYAEV-----------------LPEQKAEKI 778 (951)
T ss_pred cccchhHHHHHHHHHhcC---ceEEEEcCCC-HHHHHHHHHhhCc--ceEEecc-----------------CchhhHHHH
Confidence 389999999999999999 9999999753 5667777788775 4566632 234799999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCCh
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 274 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~ 274 (332)
+++..+ ...+.++|||.||-|+|..||+||+++.++
T Consensus 779 k~lq~~-----~~~VaMVGDGINDaPALA~AdVGIaig~gs 814 (951)
T KOG0207|consen 779 KEIQKN-----GGPVAMVGDGINDAPALAQADVGIAIGAGS 814 (951)
T ss_pred HHHHhc-----CCcEEEEeCCCCccHHHHhhccceeecccc
Confidence 998864 257999999999999999999999999874
No 107
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.05 E-value=0.00036 Score=62.39 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=68.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcch--H
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDK--V 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K--~ 230 (332)
.++..|++.++++.++.+ ++++|+|-|. .......+++.|+.. +...+.+.+ ..| ..| .
T Consensus 97 ~~~~~~~~~~~L~~l~~~----~~l~ilTNg~-~~~~~~~l~~~gl~~---~Fd~v~~s~--~~g---------~~KP~~ 157 (229)
T COG1011 97 LLPDYPEALEALKELGKK----YKLGILTNGA-RPHQERKLRQLGLLD---YFDAVFISE--DVG---------VAKPDP 157 (229)
T ss_pred hCccChhHHHHHHHHHhh----ccEEEEeCCC-hHHHHHHHHHcCChh---hhheEEEec--ccc---------cCCCCc
Confidence 378999999999998864 7899999885 788889998888632 122221111 112 112 2
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccch-HHhhhcCe-eEEEcCC
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDL-LCLLEADI-GIVIGSS 273 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl-~~l~~Ad~-gvv~~~~ 273 (332)
+..+..+...+.. ..++++||||.... ..+..+|. +|.++..
T Consensus 158 ~~f~~~~~~~g~~-p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~ 201 (229)
T COG1011 158 EIFEYALEKLGVP-PEEALFVGDSLENDILGARALGMKTVWINRG 201 (229)
T ss_pred HHHHHHHHHcCCC-cceEEEECCChhhhhHHHHhcCcEEEEECCC
Confidence 4555566666653 47899999987655 99999997 5666654
No 108
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=98.01 E-value=2.8e-05 Score=80.45 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=82.1
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceeccc-ccc-----------
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGE-IIE----------- 221 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~-~~~----------- 221 (332)
-+.||+.++-++.|++.| +++++|++-. ..-.+.+.++.|+ +++.-++.+-.+||. |+.
T Consensus 583 DPPR~ev~~ai~~c~~aG---IrV~mITGD~-~~TA~AI~r~iGi-----~~~~ed~~~~~~TG~efD~ls~~~~~~~~~ 653 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAG---IRVIMITGDN-KETAEAIAREIGI-----FSEDEDVSSMALTGSEFDDLSDEELDDAVR 653 (972)
T ss_pred CCCchhHHHHHHHHHHcC---CEEEEEcCCC-HHHHHHHHHHhCC-----CcCCccccccccchhhhhcCCHHHHHHHhh
Confidence 378999999999999999 9999999864 7777777788775 344444444445552 210
Q ss_pred -----cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc-CChhHHHHh
Q 020024 222 -----KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLRRVG 280 (332)
Q Consensus 222 -----~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~-~~~~L~~~~ 280 (332)
.=+.+..|.+.++.+.+. ++-+-.-|||.||-|+|+.||+||+|+ .+...++-|
T Consensus 654 ~~~vFaR~~P~HK~kIVeaLq~~-----geivAMTGDGVNDApALK~AdIGIAMG~~GTdVaKeA 713 (972)
T KOG0202|consen 654 RVLVFARAEPQHKLKIVEALQSR-----GEVVAMTGDGVNDAPALKKADIGIAMGISGTDVAKEA 713 (972)
T ss_pred cceEEEecCchhHHHHHHHHHhc-----CCEEEecCCCccchhhhhhcccceeecCCccHhhHhh
Confidence 014556899999876642 245668999999999999999999999 444333333
No 109
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.93 E-value=2.7e-05 Score=84.83 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=76.5
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceE---EeeeeE--E------c--Cceeccc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNV---HANEFS--F------K--ESISTGE 218 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I---~aN~l~--~------~--~g~~tG~ 218 (332)
-++||+.++.++.++++| +.++++|+- +..-+..+.++.|+-. ... +...+. . + .-+.+|.
T Consensus 567 Dplr~~v~~aI~~l~~~G---i~v~~~TGd-~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAG---IKVIMVTGD-HPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred CCChHHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 389999999999999999 999999986 3667777777777611 000 000000 0 0 0122221
Q ss_pred c---------c---c-------cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc-CChhHH
Q 020024 219 I---------I---E-------KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG-SSSSLR 277 (332)
Q Consensus 219 ~---------~---~-------~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~-~~~~L~ 277 (332)
- . . .-.++.+|.+.++.+... +..+.++|||.||.+||+.||+||+++ .+...+
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~-----g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~va 716 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQ-----GAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVS 716 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHhhCCcceecCCcccHHH
Confidence 1 0 0 013456899999877642 246789999999999999999999997 344333
No 110
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.91 E-value=5.4e-05 Score=69.78 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=41.6
Q ss_pred CCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 225 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
.+..|...++.++..++.+ .+++++||||.||++|++.|++||+++..
T Consensus 196 ~~~~K~~~l~~l~~~~gi~-~~e~i~~GD~~NDi~m~~~ag~~vamgna 243 (272)
T PRK10530 196 KGNSKGKRLTQWVEAQGWS-MKNVVAFGDNFNDISMLEAAGLGVAMGNA 243 (272)
T ss_pred CCCChHHHHHHHHHHcCCC-HHHeEEeCCChhhHHHHHhcCceEEecCc
Confidence 3446999999999888874 47899999999999999999999999754
No 111
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.90 E-value=1.5e-05 Score=73.53 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=48.9
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHhH
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVGS 281 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~~ 281 (332)
...+..|...++.+++.++.+ .++++++|||.||++|++.|++||+|++. +.+++.|.
T Consensus 191 ~~~gvsKg~al~~l~~~~gi~-~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A~ 249 (270)
T PRK10513 191 LDKRVNKGTGVKSLAEHLGIK-PEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKEVAQ 249 (270)
T ss_pred eCCCCChHHHHHHHHHHhCCC-HHHEEEECCchhhHHHHHhCCceEEecCccHHHHHhcC
Confidence 445678999999999988874 47899999999999999999999999965 56666653
No 112
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.89 E-value=2.7e-05 Score=83.97 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=75.6
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCc---eecc-ccc-----c---
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKES---ISTG-EII-----E--- 221 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g---~~tG-~~~-----~--- 221 (332)
-++||+.++.++.|+++| +.+.++|+-- ..-...+.++.|+.... .. .+..+|. ...+ ++. .
T Consensus 546 Dppr~~v~~aI~~l~~AG---I~v~MiTGD~-~~TA~aIa~~~Gi~~~~-~~-~~vi~G~el~~l~~~el~~~~~~~~Vf 619 (917)
T COG0474 546 DPPREDVKEAIEELREAG---IKVWMITGDH-VETAIAIAKECGIEAEA-ES-ALVIDGAELDALSDEELAELVEELSVF 619 (917)
T ss_pred CCCCccHHHHHHHHHHCC---CcEEEECCCC-HHHHHHHHHHcCCCCCC-Cc-eeEeehHHhhhcCHHHHHHHhhhCcEE
Confidence 489999999999999999 9999999752 55566666777763211 00 1122211 0111 110 0
Q ss_pred cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcC
Q 020024 222 KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS 272 (332)
Q Consensus 222 ~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~ 272 (332)
-=.++..|.+.++.+.+. +..+.+.|||.||.|||+.||+||.++.
T Consensus 620 ARvsP~qK~~IV~~lq~~-----g~vVamtGDGvNDapALk~ADVGIamg~ 665 (917)
T COG0474 620 ARVSPEQKARIVEALQKS-----GHVVAMTGDGVNDAPALKAADVGIAMGG 665 (917)
T ss_pred EEcCHHHHHHHHHHHHhC-----CCEEEEeCCCchhHHHHHhcCccEEecc
Confidence 114567999999988764 3577899999999999999999998885
No 113
>PRK10976 putative hydrolase; Provisional
Probab=97.86 E-value=1.8e-05 Score=72.92 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=49.2
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHhH
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVGS 281 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~~ 281 (332)
...+..|...++.+++.++.+ .++++++|||.||++|++.|++||+|++. +.+++.|.
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~-~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A~ 243 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYS-LKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKDLLP 243 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCC-HHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHHHhCC
Confidence 455678999999999988874 47899999999999999999999999966 56666663
No 114
>PRK06769 hypothetical protein; Validated
Probab=97.85 E-value=8.5e-05 Score=64.44 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=63.8
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHH--------HHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCC
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD--------LIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVES 225 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~--------~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~ 225 (332)
+.+.||+.++|++|+++| +++.|+|.+. .. -+...++..|+. .++.... .++. ....
T Consensus 27 ~~~~pgv~e~L~~Lk~~G---~~l~I~Tn~~-~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~------~~~~---~~~~ 91 (173)
T PRK06769 27 FTLFPFTKASLQKLKANH---IKIFSFTNQP-GIADGIATIADFVQELKGFGFD--DIYLCPH------KHGD---GCEC 91 (173)
T ss_pred eEECCCHHHHHHHHHHCC---CEEEEEECCc-hhcCCcCCHHHHHHHHHhCCcC--EEEECcC------CCCC---CCCC
Confidence 457899999999999999 9999999752 21 122235555552 2221000 0000 0001
Q ss_pred CcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEc
Q 020024 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIG 271 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~ 271 (332)
.--+...+.+.+++.+. ...+++||||+.+|+.++..|++ .|.+.
T Consensus 92 ~KP~p~~~~~~~~~l~~-~p~~~i~IGD~~~Di~aA~~aGi~~i~v~ 137 (173)
T PRK06769 92 RKPSTGMLLQAAEKHGL-DLTQCAVIGDRWTDIVAAAKVNATTILVR 137 (173)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHeEEEcCCHHHHHHHHHCCCeEEEEe
Confidence 11144566666666665 34789999999999999999998 44444
No 115
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.84 E-value=0.00011 Score=74.27 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCH------------HHHHHHHHhcCCCcceEEeeeeEEcCceecccccccC
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCG------------DLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKV 223 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~------------~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~ 223 (332)
+.||+.+.|+.|+++| +.++|+|.-- . ..+..+++.+|++...++|.. ++
T Consensus 198 l~pgV~e~L~~L~~~G---y~IvIvTNQ~-gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~----~~---------- 259 (526)
T TIGR01663 198 IFPEIPEKLKELEADG---FKICIFTNQG-GIARGKINADDFKAKIEAIVAKLGVPFQVFIAIG----AG---------- 259 (526)
T ss_pred cccCHHHHHHHHHHCC---CEEEEEECCc-ccccCcccHHHHHHHHHHHHHHcCCceEEEEeCC----CC----------
Confidence 5789999999999999 9999999631 2 347788888887533233321 10
Q ss_pred CCCcchHHHHHHHHHHhC----CCCCceEEEEeCCccchHHhhhcCeeEEEcC-ChhHHHHhHhcCCeeeecCchhhh
Q 020024 224 ESPIDKVQAFNNTLEKYG----TDRKNLSVYIGDSVGDLLCLLEADIGIVIGS-SSSLRRVGSQFGVTFIPLYPGLVK 296 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~----~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~-~~~L~~~~~~~~~~~~p~~~~~~~ 296 (332)
.+.--+...+..++..++ . ...+++||||+.+|+.+...|+. --.+ +..=+.+|...|++|..-++-.++
T Consensus 260 ~~RKP~pGm~~~a~~~~~~~~~I-d~~~S~~VGDaagr~~~g~~ag~--~~~D~s~~D~~FA~n~gi~F~tPee~Fl~ 334 (526)
T TIGR01663 260 FYRKPLTGMWDHLKEEANDGTEI-QEDDCFFVGDAAGRPANGKAAGK--KKKDFSCADRLFAANLGIPFATPEEFFLG 334 (526)
T ss_pred CCCCCCHHHHHHHHHhcCcccCC-CHHHeEEeCCcccchHHHHhcCC--CcCCCChhhHHHHHHcCCcccChHHHhCC
Confidence 011112344555555443 2 24689999999999988777652 0010 123467888899988866664443
No 116
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.83 E-value=7.3e-05 Score=81.97 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=76.6
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC--cceEEee-----------eeEEc---C-----
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN--ALNVHAN-----------EFSFK---E----- 212 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~--~~~I~aN-----------~l~~~---~----- 212 (332)
-++||+.++.++.|++.| +++.++|+-- ..-...+.++.|+- +..++.- .+.+. +
T Consensus 655 d~lr~~~~~~I~~l~~ag---i~v~miTGD~-~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRAS---IRTVMITGDN-PLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFAS 730 (1054)
T ss_pred cCCCccHHHHHHHHHHCC---CeEEEECCCC-HHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCcccccc
Confidence 489999999999999999 9999999863 66677777787872 1122211 11100 0
Q ss_pred -----------------------ceeccccc---------------c--c---CCCCcchHHHHHHHHHHhCCCCCceEE
Q 020024 213 -----------------------SISTGEII---------------E--K---VESPIDKVQAFNNTLEKYGTDRKNLSV 249 (332)
Q Consensus 213 -----------------------g~~tG~~~---------------~--~---~~~~~~K~~~l~~~~~~~~~~~~~~vi 249 (332)
-..||... . . =.++.+|.+.++.+.+. +..+.
T Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~-----g~~V~ 805 (1054)
T TIGR01657 731 TQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKL-----DYTVG 805 (1054)
T ss_pred ccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhC-----CCeEE
Confidence 01233110 0 0 14567888888877642 35788
Q ss_pred EEeCCccchHHhhhcCeeEEEcCC
Q 020024 250 YIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 250 yiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
++|||.||.++|+.||+||+++..
T Consensus 806 m~GDG~ND~~ALK~AdVGIam~~~ 829 (1054)
T TIGR01657 806 MCGDGANDCGALKQADVGISLSEA 829 (1054)
T ss_pred EEeCChHHHHHHHhcCcceeeccc
Confidence 999999999999999999999854
No 117
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.83 E-value=6.1e-05 Score=76.04 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
-++||++.+.++.+++.| +.+.++|+.- ......+.+..|+ ++ ...+.+|.+.+
T Consensus 346 d~lr~~~~~~i~~l~~~g---i~~~~ltGD~-~~~a~~ia~~lgi-----~~-----------------~~~p~~K~~~v 399 (499)
T TIGR01494 346 DPLRDDAKETISELREAG---IRVIMLTGDN-VLTAKAIAKELGI-----FA-----------------RVTPEEKAALV 399 (499)
T ss_pred CCCchhHHHHHHHHHHCC---CeEEEEcCCC-HHHHHHHHHHcCc-----ee-----------------ccCHHHHHHHH
Confidence 489999999999999998 8999999874 6666666666553 11 14566899999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
+++... +..+.++|||.||.+++..||+||+++
T Consensus 400 ~~l~~~-----g~~v~~vGDg~nD~~al~~Advgia~~ 432 (499)
T TIGR01494 400 EALQKK-----GRVVAMTGDGVNDAPALKKADVGIAMG 432 (499)
T ss_pred HHHHHC-----CCEEEEECCChhhHHHHHhCCCccccc
Confidence 887542 357999999999999999999999997
No 118
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.83 E-value=3.7e-05 Score=68.98 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=48.2
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHhH
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVGS 281 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~~ 281 (332)
...+..|...++.++...+.. ..+++++|||.||++|++.+++||+|++. +.+++.|.
T Consensus 181 ~~~~vsK~~ai~~l~~~~~i~-~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~ 239 (254)
T PF08282_consen 181 TPKGVSKGSAIKYLLEYLGIS-PEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAAD 239 (254)
T ss_dssp EETTSSHHHHHHHHHHHHTTS-GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSS
T ss_pred eeCCCCHHHHHHHHhhhcccc-cceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCC
Confidence 345678999999999888874 47999999999999999999999999966 45555553
No 119
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.82 E-value=0.00015 Score=61.70 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccc--cCHHHHHHHHHhc-----CCCcceEEeeeeEEcCceecccccccCCCCcc
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYC--WCGDLIRASFSSA-----GLNALNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g--~s~~~I~~~l~~~-----g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
.++|+.++++.++++| +.++=+|+- |-....+.+|..+ ++|.=.++.+.-..- +.+..+...+ ....-
T Consensus 28 ~h~g~~~l~~~i~~~G---Y~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~-~al~rEvi~~-~p~~f 102 (157)
T PF08235_consen 28 THPGAAELYRKIADNG---YKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLF-SALHREVISK-DPEEF 102 (157)
T ss_pred hhhcHHHHHHHHHHCC---eEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchh-hhhhcccccc-ChHHH
Confidence 4678889999999999 999999972 1145556666655 555445555421100 0011111111 11235
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG 267 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g 267 (332)
|...|+.+...+......-...+|...+|..+-..+++.
T Consensus 103 K~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 103 KIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 889999888764321223455799999999999999973
No 120
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.80 E-value=3.3e-05 Score=71.59 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=57.6
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHhHhcCCeeee--cCchhhhhhh
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVGSQFGVTFIP--LYPGLVKKQK 299 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~~~~~~~~~p--~~~~~~~~~~ 299 (332)
...+..|...++.+++.++.+ .++++++|||.||++|++.|++||+|++. +.+++.|... .+.+ -..|+...++
T Consensus 183 ~~~g~sKg~al~~l~~~~gi~-~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~A~~~--~v~~~n~edGva~~l~ 259 (272)
T PRK15126 183 LPVGCNKGAALAVLSQHLGLS-LADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAELPHL--PVIGHCRNQAVSHYLT 259 (272)
T ss_pred ecCCCChHHHHHHHHHHhCCC-HHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHhCCCC--eecCCCcchHHHHHHH
Confidence 345668999999999998874 47899999999999999999999999976 4566655321 1222 2336666666
Q ss_pred hhhc
Q 020024 300 EYTE 303 (332)
Q Consensus 300 ~~~~ 303 (332)
.|..
T Consensus 260 ~~~~ 263 (272)
T PRK15126 260 HWLD 263 (272)
T ss_pred HHhc
Confidence 6553
No 121
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.80 E-value=2.6e-05 Score=65.87 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=60.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
.+.+|||+.+||++|+ ++ ++++|+|++- ..+++.+++.+++.. . +...+...+....+ |..+
T Consensus 43 ~v~l~pG~~e~L~~L~-~~---~~l~I~Ts~~-~~~~~~il~~l~~~~-~-~f~~i~~~~d~~~~-----------KP~~ 104 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-EL---FELVVFTAGL-RMYADPVLDLLDPKK-Y-FGYRRLFRDECVFV-----------KGKY 104 (148)
T ss_pred EEEECCCHHHHHHHHH-hc---cEEEEEeCCc-HHHHHHHHHHhCcCC-C-EeeeEEECcccccc-----------CCeE
Confidence 4678999999999998 56 8999999994 899999998876521 1 11111111111111 1111
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
++ -+...+. ...++|+||||.+|+.+...+++
T Consensus 105 ~k-~l~~l~~-~p~~~i~i~Ds~~~~~aa~~ngI 136 (148)
T smart00577 105 VK-DLSLLGR-DLSNVIIIDDSPDSWPFHPENLI 136 (148)
T ss_pred ee-cHHHcCC-ChhcEEEEECCHHHhhcCccCEE
Confidence 11 1222333 24789999999999998777753
No 122
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.74 E-value=5.8e-05 Score=69.55 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=49.3
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHhH
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVGS 281 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~~ 281 (332)
...+.+|...++.+++.++.. ..+++++|||.||++|++.|++||+|++. +.++++|.
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~-~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~A~ 242 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIK-LEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKELAD 242 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCC-HHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhhCC
Confidence 456778999999999988874 46899999999999999999999999976 56666665
No 123
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.71 E-value=0.0002 Score=61.84 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=64.0
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCH------------HHHHHHHHhcCCCcceEEeeeeEEcCceecccccccC
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCG------------DLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKV 223 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~------------~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~ 223 (332)
+.||+.++|+.|+++| ++++|+|.+- . ..++.+++.+|+....+++.. ++ .
T Consensus 43 ~~pgv~e~L~~Lk~~G---~~l~I~TN~~-~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~----~~----~----- 105 (166)
T TIGR01664 43 LYPEIPAKLQELDDEG---YKIVIFTNQS-GIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATH----AG----L----- 105 (166)
T ss_pred ecCCHHHHHHHHHHCC---CEEEEEeCCc-ccccCcccHHHHHHHHHHHHHHcCCCEEEEEecC----CC----C-----
Confidence 5799999999999999 9999999863 3 246778888886432222211 00 0
Q ss_pred CCCcchHHHHHHHHHHhC--CCCCceEEEEeCCc--------cchHHhhhcCeeE
Q 020024 224 ESPIDKVQAFNNTLEKYG--TDRKNLSVYIGDSV--------GDLLCLLEADIGI 268 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~--~~~~~~viyiGDs~--------~Dl~~l~~Ad~gv 268 (332)
..--+...++..+.+.+ .+ ..+++||||+. +|+.++..|++.+
T Consensus 106 -~~KP~p~~~~~~~~~~~~~~~-~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 106 -YRKPMTGMWEYLQSQYNSPIK-MTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred -CCCCccHHHHHHHHHcCCCCC-chhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 01113456666666665 42 46899999996 6999999998643
No 124
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00012 Score=72.28 Aligned_cols=92 Identities=22% Similarity=0.354 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHH-HhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASF-SSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l-~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
.+.||.+|.|..+|+-| ++.+.+++- ..+-...+ ++.|++ . |. -.+++++|.+.+
T Consensus 447 ivK~Gi~ERf~elR~Mg---IkTvM~TGD--N~~TAa~IA~EAGVD--d----------------fi-AeatPEdK~~~I 502 (681)
T COG2216 447 IVKPGIKERFAELRKMG---IKTVMITGD--NPLTAAAIAAEAGVD--D----------------FI-AEATPEDKLALI 502 (681)
T ss_pred hcchhHHHHHHHHHhcC---CeEEEEeCC--CHHHHHHHHHHhCch--h----------------hh-hcCChHHHHHHH
Confidence 57788888888888877 888888864 23333333 344542 1 21 135678999999
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChh
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSS 275 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~ 275 (332)
++...+ +.-+-+.|||.||-|+|..||+|++|+.+..
T Consensus 503 ~~eQ~~-----grlVAMtGDGTNDAPALAqAdVg~AMNsGTq 539 (681)
T COG2216 503 RQEQAE-----GRLVAMTGDGTNDAPALAQADVGVAMNSGTQ 539 (681)
T ss_pred HHHHhc-----CcEEEEcCCCCCcchhhhhcchhhhhccccH
Confidence 887653 3456799999999999999999999998743
No 125
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.67 E-value=0.00032 Score=60.67 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=66.4
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
..+.||+.++++.|+++| .+++|+|.+-....+..+++.+|+. .+ .+. .--+...+
T Consensus 42 ~~~~pgv~e~L~~Lk~~g---~~l~I~Sn~~~~~~~~~~~~~~gl~---~~-----------~~~-------~KP~p~~~ 97 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAG---RKLLIVSNNAGEQRAKAVEKALGIP---VL-----------PHA-------VKPPGCAF 97 (170)
T ss_pred CCcChhHHHHHHHHHHcC---CEEEEEeCCchHHHHHHHHHHcCCE---EE-----------cCC-------CCCChHHH
Confidence 467899999999999999 9999999873146666666665541 11 010 01134556
Q ss_pred HHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCe-eEEEcCC
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIGSS 273 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-gvv~~~~ 273 (332)
...+.+.+.. ..+++||||+. +|+.++..+++ .|.+..+
T Consensus 98 ~~~l~~~~~~-~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g 138 (170)
T TIGR01668 98 RRAHPEMGLT-SEQVAVVGDRLFTDVMGGNRNGSYTILVEPL 138 (170)
T ss_pred HHHHHHcCCC-HHHEEEECCcchHHHHHHHHcCCeEEEEccC
Confidence 6666666653 47899999998 79999999998 4555433
No 126
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.66 E-value=5.5e-05 Score=70.20 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=43.1
Q ss_pred CCCCcchHHHHHHHHHHhCC---CCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 223 VESPIDKVQAFNNTLEKYGT---DRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~---~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
...+.+|...++.+++.++. + ..+++++|||.||++|++.|++||+|++.
T Consensus 182 ~~~g~sKg~al~~l~~~lgi~~~~-~~~viafGDs~NDi~Ml~~ag~gvAM~~~ 234 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQQLSGT-RPTTLGLGDGPNDAPLLDVMDYAVVVKGL 234 (271)
T ss_pred ecCCCCHHHHHHHHHHHHHhhcCC-CceEEEEcCCHHHHHHHHhCCEEEEecCC
Confidence 34567899999999988876 4 37899999999999999999999999833
No 127
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.62 E-value=6.7e-05 Score=67.15 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=45.9
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHh
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVG 280 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~ 280 (332)
..+..|...++.++..++.+ ..+++++|||.||++|++.|++|++|++. +.+++.|
T Consensus 145 ~~~~~K~~~i~~l~~~~~i~-~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A 201 (225)
T TIGR01482 145 PQGVNKGVAVKKLKEKLGIK-PGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWA 201 (225)
T ss_pred eCCCCHHHHHHHHHHHhCCC-HHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhc
Confidence 34567999999999888774 47899999999999999999999999965 4455544
No 128
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.60 E-value=8.2e-05 Score=66.88 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=46.1
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHh
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVG 280 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~ 280 (332)
..+..|...++.++..++.+ ..+++++|||.||++|++.|++++++++. +.+++.|
T Consensus 153 ~~~~~Kg~al~~l~~~~~i~-~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a 209 (230)
T PRK01158 153 SPGVNKGTGLKKLAELMGID-PEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAA 209 (230)
T ss_pred eCCCChHHHHHHHHHHhCCC-HHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhc
Confidence 34567999999999888774 47899999999999999999999999755 4555554
No 129
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.57 E-value=0.00021 Score=60.30 Aligned_cols=84 Identities=19% Similarity=0.353 Sum_probs=66.0
Q ss_pred HHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCC
Q 020024 164 FQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTD 243 (332)
Q Consensus 164 l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~ 243 (332)
++.+.+.| +++.|+|+-- +..++.-++.+|+.. + +.|. .+|..+.++++.+.+..
T Consensus 44 ik~l~~~G---i~vAIITGr~-s~ive~Ra~~LGI~~--~-----------~qG~--------~dK~~a~~~L~~~~~l~ 98 (170)
T COG1778 44 IKLLLKSG---IKVAIITGRD-SPIVEKRAKDLGIKH--L-----------YQGI--------SDKLAAFEELLKKLNLD 98 (170)
T ss_pred HHHHHHcC---CeEEEEeCCC-CHHHHHHHHHcCCce--e-----------eech--------HhHHHHHHHHHHHhCCC
Confidence 44556667 9999999875 567787888888632 2 2332 36999999999998884
Q ss_pred CCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 244 RKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 244 ~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
+.++.|+||-.+|+|+++.++++++.++.
T Consensus 99 -~e~~ayiGDD~~Dlpvm~~vGls~a~~dA 127 (170)
T COG1778 99 -PEEVAYVGDDLVDLPVMEKVGLSVAVADA 127 (170)
T ss_pred -HHHhhhhcCccccHHHHHHcCCccccccc
Confidence 58999999999999999999988777654
No 130
>PLN02887 hydrolase family protein
Probab=97.56 E-value=9.1e-05 Score=75.85 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=48.6
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHh
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVG 280 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~ 280 (332)
...+..|...++.++..++.+ .++++++|||.||++|++.|++||+|++. +.+++.|
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~-~eeviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~A 559 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVS-PDEIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVA 559 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCC-HHHEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhC
Confidence 455678999999999998874 47999999999999999999999999966 4566655
No 131
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.51 E-value=0.00014 Score=65.20 Aligned_cols=46 Identities=28% Similarity=0.259 Sum_probs=39.9
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEE
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 270 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~ 270 (332)
..+..|...++.+++..+.+ ..+++++|||.||++|++.|++||++
T Consensus 175 ~~~~~Kg~al~~l~~~lgi~-~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 175 GASSSKGKAANWLKATYNQP-DVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred cCCCCHHHHHHHHHHHhCCC-CCcEEEECCCHHHHHHHHhCCceEEe
Confidence 34556999999999888874 57899999999999999999999986
No 132
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.49 E-value=0.00041 Score=57.11 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=62.6
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceE--EeeeeEEcCceecccccccCCCCcchHHH
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNV--HANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I--~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
.++||+.++++.++++| ++++|+|.++...++...++..+. ...+ +..- | +....+.. ..|...
T Consensus 29 ~~~~gv~e~L~~Lk~~g---~~l~i~Sn~~~~~~~~~~l~~~~~-~~~i~~l~~~--f-~~~~~~~~-------~pkp~~ 94 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNG---FLLALASYNDDPHVAYELLKIFED-FGIIFPLAEY--F-DPLTIGYW-------LPKSPR 94 (128)
T ss_pred HHHHHHHHHHHHHHHCC---eEEEEEeCCCCHHHHHHHHHhccc-cccchhhHhh--h-hhhhhcCC-------CcHHHH
Confidence 68899999999999999 999999998558888888876540 0000 0000 0 01111110 126667
Q ss_pred HHHHHHHhC--CCCCceEEEEeCCccchHHhh
Q 020024 233 FNNTLEKYG--TDRKNLSVYIGDSVGDLLCLL 262 (332)
Q Consensus 233 l~~~~~~~~--~~~~~~viyiGDs~~Dl~~l~ 262 (332)
+...+.+.+ .. ..+++||||+..|+...+
T Consensus 95 ~~~a~~~lg~~~~-p~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 95 LVEIALKLNGVLK-PKSILFVDDRPDNNEEVD 125 (128)
T ss_pred HHHHHHHhcCCCC-cceEEEECCCHhHHHHHH
Confidence 777777777 53 579999999999987654
No 133
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.49 E-value=0.00015 Score=65.78 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=47.9
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHhHh
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVGSQ 282 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~~~ 282 (332)
..+.+|...++.++.+++.+ ..+++++|||.||++|+..+++||++++. +.+++.+..
T Consensus 155 ~~~~~K~~al~~l~~~~g~~-~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~ 213 (236)
T TIGR02471 155 PLRASKGLALRYLSYRWGLP-LEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQ 213 (236)
T ss_pred eCCCChHHHHHHHHHHhCCC-HHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcC
Confidence 44668999999999888763 46899999999999999999999999754 567777653
No 134
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.48 E-value=0.00057 Score=75.11 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC-C-cceEE---eee---------------------
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL-N-ALNVH---ANE--------------------- 207 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~-~-~~~I~---aN~--------------------- 207 (332)
-++|||.++.++.|++.| +++.++|+- ..+-...+....|+ + +..++ .+.
T Consensus 630 D~lq~~v~etI~~L~~AG---Ikv~mlTGD-~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 705 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAG---IKIWVLTGD-KVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEE 705 (1057)
T ss_pred hhhhhccHHHHHHHHHCC---CeEEEEcCC-cHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHh
Confidence 489999999999999999 999999974 24555555555554 1 11111 110
Q ss_pred -----------eEEcCce----eccc----cc----------ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccch
Q 020024 208 -----------FSFKESI----STGE----II----------EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDL 258 (332)
Q Consensus 208 -----------l~~~~g~----~tG~----~~----------~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl 258 (332)
+.+++.. .... +. ..-+++..|.+.++.+.... +..+.++|||.||.
T Consensus 706 ~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~----~~~vl~iGDG~ND~ 781 (1057)
T TIGR01652 706 FNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKST----GKTTLAIGDGANDV 781 (1057)
T ss_pred hhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcC----CCeEEEEeCCCccH
Confidence 1122110 0000 10 01244568888888665431 25788999999999
Q ss_pred HHhhhcCeeEEEcCC
Q 020024 259 LCLLEADIGIVIGSS 273 (332)
Q Consensus 259 ~~l~~Ad~gvv~~~~ 273 (332)
+|++.||+||.+...
T Consensus 782 ~mlk~AdVGIgi~g~ 796 (1057)
T TIGR01652 782 SMIQEADVGVGISGK 796 (1057)
T ss_pred HHHhhcCeeeEecCh
Confidence 999999999987654
No 135
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.45 E-value=0.00018 Score=66.10 Aligned_cols=50 Identities=28% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCcchHHHHHHHHHHhCCC-CCceEEEEeCCccchHHhhhcCeeEEEcCCh
Q 020024 225 SPIDKVQAFNNTLEKYGTD-RKNLSVYIGDSVGDLLCLLEADIGIVIGSSS 274 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~-~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~ 274 (332)
.+..|...++.+++.++.. ...+++++|||.||++|++.|++||+|++..
T Consensus 173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~ 223 (256)
T TIGR01486 173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPN 223 (256)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCC
Confidence 4567999999998887753 1478999999999999999999999999763
No 136
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.45 E-value=0.00039 Score=65.24 Aligned_cols=105 Identities=4% Similarity=-0.155 Sum_probs=66.2
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc---ceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA---LNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~---~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
..+.||+.++++.++++| .+++|+|+.- ....+..++.+++.. ..+++-+ ....+......+..+.
T Consensus 186 ~~~~~~~~~~l~~l~~~g---~~i~i~T~r~-~~~~~~~l~~l~~~~~~f~~i~~~~-------~~~~~~~~~~~~kp~p 254 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAG---YEIIVVSGRD-GVCEEDTVEWLRQTDIWFDDLIGRP-------PDMHFQREQGDKRPDD 254 (300)
T ss_pred CCCChhHHHHHHHHHhCC---CEEEEEeCCC-hhhHHHHHHHHHHcCCchhhhhCCc-------chhhhcccCCCCCCcH
Confidence 468999999999999998 9999999884 788888887765421 1111211 0000110000111122
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+...+.+.+...+..++||||+.+|+.+.+.|++.++
T Consensus 255 ~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i 293 (300)
T PHA02530 255 VVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECW 293 (300)
T ss_pred HHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEE
Confidence 333434433333234789999999999999999998644
No 137
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.42 E-value=0.00017 Score=66.12 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=46.2
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC-hhHHHHh
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS-SSLRRVG 280 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~-~~L~~~~ 280 (332)
...+..|...++.++..++.. ..+++++|||.||++|+..|++++++++. +.+++.|
T Consensus 183 ~~~~~~K~~~i~~~~~~~~~~-~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~~a 240 (256)
T TIGR00099 183 TAKGVSKGSALQSLAEALGIS-LEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKALA 240 (256)
T ss_pred cCCCCChHHHHHHHHHHcCCC-HHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHHhC
Confidence 345678999999999888763 47899999999999999999999999744 4444443
No 138
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.41 E-value=0.0011 Score=73.39 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=35.7
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
+++..|.+.++-+... + ...+.++|||.||.+|++.||+||-+...
T Consensus 854 ~sP~QKa~IV~~vk~~-~---~~vtlaIGDGaNDv~mIq~AdVGIGIsG~ 899 (1178)
T PLN03190 854 VAPLQKAGIVALVKNR-T---SDMTLAIGDGANDVSMIQMADVGVGISGQ 899 (1178)
T ss_pred CCHHHHHHHHHHHHhc-C---CcEEEEECCCcchHHHHHhcCeeeeecCc
Confidence 4566888888765542 1 24688999999999999999999987655
No 139
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.40 E-value=0.00054 Score=59.28 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=63.0
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCcee-cccccccCCCCcch
Q 020024 151 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESIS-TGEIIEKVESPIDK 229 (332)
Q Consensus 151 ~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~-tG~~~~~~~~~~~K 229 (332)
++.+.++|++.+.|+.|+++| +++.|.|-.+..+..+.+|+.++++.. +. .++. ...|...-....+|
T Consensus 41 g~~v~lypdv~~iL~~L~~~g---v~lavASRt~~P~~A~~~L~~l~i~~~----~~----~~~~~~~~F~~~eI~~gsK 109 (169)
T PF12689_consen 41 GEEVSLYPDVPEILQELKERG---VKLAVASRTDEPDWARELLKLLEIDDA----DG----DGVPLIEYFDYLEIYPGSK 109 (169)
T ss_dssp --EE---TTHHHHHHHHHHCT-----EEEEE--S-HHHHHHHHHHTT-C------------------CCECEEEESSS-H
T ss_pred CCEEEeCcCHHHHHHHHHHCC---CEEEEEECCCChHHHHHHHHhcCCCcc----cc----ccccchhhcchhheecCch
Confidence 457899999999999999999 999999977678899999998876400 00 0110 01111111122379
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEE
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIV 269 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv 269 (332)
..+++++.+..+. .+..++|+=|-..-......-|+-.+
T Consensus 110 ~~Hf~~i~~~tgI-~y~eMlFFDDe~~N~~~v~~lGV~~v 148 (169)
T PF12689_consen 110 TTHFRRIHRKTGI-PYEEMLFFDDESRNIEVVSKLGVTCV 148 (169)
T ss_dssp HHHHHHHHHHH----GGGEEEEES-HHHHHHHHTTT-EEE
T ss_pred HHHHHHHHHhcCC-ChhHEEEecCchhcceeeEecCcEEE
Confidence 9999999988887 47899999999988887776565333
No 140
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.37 E-value=0.0024 Score=56.12 Aligned_cols=116 Identities=15% Similarity=0.225 Sum_probs=61.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
.++..||+.+.++.|.+.| ...++||+.- . ..+ ..+...|.+-
T Consensus 71 ~l~p~~gA~e~l~~L~~~g---~~~~~Itar~-~----------~~~-----------------------~~~~~~k~~W 113 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKG---HEIVIITARP-P----------EFP-----------------------DHSAEEKREW 113 (191)
T ss_dssp T--B-TTHHHHHHHHHTST---TEEEEEEE-S-S----------SSG-----------------------CCCHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcC---CcEEEEEecC-c----------ccc-----------------------chHHHHHHHH
Confidence 4778899999999999988 7888888632 1 000 0011235444
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHhcCCeeeecCchhhhhhhhhhcCCCCCcccc
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKEK 312 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 312 (332)
|++..... ...++++.||- .+..+| +.+-+.+.-..-+...|++.+=|.. .|.+.
T Consensus 114 l~~hf~~i---~~~~~~~~~~K-----~~v~~D--vlIDD~~~n~~~~~~~g~~~iLfd~---------------p~Nr~ 168 (191)
T PF06941_consen 114 LERHFPFI---PYDNLIFTGDK-----TLVGGD--VLIDDRPHNLEQFANAGIPVILFDQ---------------PYNRD 168 (191)
T ss_dssp HHHHHTHH---HHCCEEEESSG-----GGC--S--EEEESSSHHHSS-SSESSEEEEE-----------------GGGTT
T ss_pred HHHHcCCC---chheEEEecCC-----CeEecc--EEecCChHHHHhccCCCceEEEEcC---------------CCCCC
Confidence 44442211 12345555542 123466 6777776655556667776665542 12222
Q ss_pred CCEEEEeCCHHHHHHhHh
Q 020024 313 SGILYTVSSWAEVHAFIL 330 (332)
Q Consensus 313 ~~~ly~~~~W~~i~~~l~ 330 (332)
-...++|.+|.||.+++.
T Consensus 169 ~~~~~Rv~~W~ei~~~i~ 186 (191)
T PF06941_consen 169 ESNFPRVNNWEEIEDLIL 186 (191)
T ss_dssp --TSEEE-STTSHHHHHH
T ss_pred CCCCccCCCHHHHHHHHH
Confidence 225799999999988763
No 141
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.35 E-value=0.0088 Score=54.43 Aligned_cols=190 Identities=21% Similarity=0.239 Sum_probs=104.3
Q ss_pred eEEEEeCCCCccc--ccchHHHHHHHHHhCCCCCCCCCccccccccccccc-chhhhhHHHHHHHHHHHHhhcCCCCccc
Q 020024 32 LIIFSDFDLTCTI--VDSSAILAEIAIVTAPKSDQNQPENQLGRMSSGELR-NTWGLLSKQYTEEYEQCIESFMPSEKVE 108 (332)
Q Consensus 32 ~lvi~DFD~TiT~--~Dt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~p~~~~~ 108 (332)
.+++||++|||.. ......+.+.+-. ++++ .. +.+...+...|.+...+ .|-..
T Consensus 8 ravtfD~~~tLl~~~~~~~~~y~~i~~~-------------------~gl~~~~-~~~~~~~~~~~~~~~~~-~p~~~-- 64 (237)
T KOG3085|consen 8 RAVTFDAGGTLLATLPPVMEVYCEIAEA-------------------YGLEYDD-SLIETIFRKDFKKMSEK-GPFFG-- 64 (237)
T ss_pred EEEEEeCCCceeecCCccHHHHHHHHHH-------------------hCCCCCH-HHHhHhhhHHHHhhccc-CCccc--
Confidence 4999999999984 4445554444422 2244 33 56666666777653322 22211
Q ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHH--Hh---------hcCCCChhHHHHHHHHHHcCCCCCcE
Q 020024 109 NFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKK--AG---------ERLSLQDGCTTFFQKVVKNENLNANV 177 (332)
Q Consensus 109 ~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~--~~---------~~i~lrpg~~e~l~~l~~~g~~~~~~ 177 (332)
.+.+.+ .++.||...+..... .++....+... +. ....+-+++.++++++|+.| ..+
T Consensus 65 --~~~g~l----~~~~ww~~lv~~~f~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g---~~l 132 (237)
T KOG3085|consen 65 --LYSGEL----TLSQWWPKLVESTFG---KAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKG---TIL 132 (237)
T ss_pred --ccCCcc----cHHHHHHHHHHHHhc---cccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCC---eEE
Confidence 111111 134555543333211 12222222111 11 13466778889999999999 899
Q ss_pred EEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchH--HHHHHHHHHhCCCCCceEEEEeCC-
Q 020024 178 HVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV--QAFNNTLEKYGTDRKNLSVYIGDS- 254 (332)
Q Consensus 178 ~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~--~~l~~~~~~~~~~~~~~viyiGDs- 254 (332)
.|+| |+ .+-.+..+...|+.. .||--+.+ +.-|..|. ++.+..+...+.. +.++++|||+
T Consensus 133 ~iis-N~-d~r~~~~l~~~~l~~--------~fD~vv~S------~e~g~~KPDp~If~~al~~l~v~-Pee~vhIgD~l 195 (237)
T KOG3085|consen 133 GIIS-NF-DDRLRLLLLPLGLSA--------YFDFVVES------CEVGLEKPDPRIFQLALERLGVK-PEECVHIGDLL 195 (237)
T ss_pred EEec-CC-cHHHHHHhhccCHHH--------hhhhhhhh------hhhccCCCChHHHHHHHHHhCCC-hHHeEEecCcc
Confidence 9998 54 667776666666421 11111111 11122232 3444445555543 5799999998
Q ss_pred ccchHHhhhcCe-eEEEcCC
Q 020024 255 VGDLLCLLEADI-GIVIGSS 273 (332)
Q Consensus 255 ~~Dl~~l~~Ad~-gvv~~~~ 273 (332)
.||+..++.+|. ++.+.+.
T Consensus 196 ~nD~~gA~~~G~~ailv~~~ 215 (237)
T KOG3085|consen 196 ENDYEGARNLGWHAILVDNS 215 (237)
T ss_pred ccccHhHHHcCCEEEEEccc
Confidence 588999999997 6666644
No 142
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.27 E-value=0.00045 Score=64.15 Aligned_cols=48 Identities=31% Similarity=0.340 Sum_probs=41.8
Q ss_pred CCCcchHHHHHHHHHHhCCCCC-ceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRK-NLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~-~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
..+ .|...++.+.+..+.+ . .+++++|||.||++|++.|+++++|++.
T Consensus 187 ~~~-~Kg~al~~l~~~~~i~-~~~~v~~~GDs~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 187 GGG-DKGKAVRWLKELYRRQ-DGVETIALGDSPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred CCC-CHHHHHHHHHHHHhcc-CCceEEEEcCChhhHHHHHhCCeeEEeCCC
Confidence 345 7999999998887763 5 7999999999999999999999999975
No 143
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.24 E-value=0.00037 Score=63.09 Aligned_cols=46 Identities=28% Similarity=0.338 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHhCCC-CCceEEEEeCCccchHHhhhcCeeEEEc
Q 020024 226 PIDKVQAFNNTLEKYGTD-RKNLSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~-~~~~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
+..|...++.++..++.. ...+++++|||.||++|++.||+||+++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v~ 225 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLVG 225 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEecC
Confidence 778999999888776542 2347999999999999999999999875
No 144
>PLN02382 probable sucrose-phosphatase
Probab=97.22 E-value=0.00061 Score=67.26 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=46.9
Q ss_pred CCCCcchHHHHHHHHHHh---CCCCCceEEEEeCCccchHHhhhcC-eeEEEcCC-hhHHHHhH
Q 020024 223 VESPIDKVQAFNNTLEKY---GTDRKNLSVYIGDSVGDLLCLLEAD-IGIVIGSS-SSLRRVGS 281 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~---~~~~~~~viyiGDs~~Dl~~l~~Ad-~gvv~~~~-~~L~~~~~ 281 (332)
...+.+|...++.++..+ +.. ..+++++|||.||++|++.++ +||+|++. +.+++.+.
T Consensus 170 ~p~g~sKg~Al~~L~~~~~~~gi~-~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~ 232 (413)
T PLN02382 170 LPQGAGKGQALAYLLKKLKAEGKA-PVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYA 232 (413)
T ss_pred EeCCCCHHHHHHHHHHHhhhcCCC-hhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHH
Confidence 345667999999998887 553 468999999999999999999 69999865 56766553
No 145
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.20 E-value=0.0065 Score=56.03 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=72.1
Q ss_pred HHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHh---cCCCcceE-EeeeeEE-----cCceeccc-
Q 020024 149 KAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS---AGLNALNV-HANEFSF-----KESISTGE- 218 (332)
Q Consensus 149 ~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~---~g~~~~~I-~aN~l~~-----~~g~~tG~- 218 (332)
+......+.+.+.++|+.++.+| ++++.+|+.+ ..+....++. +|++...- +.++..+ .+......
T Consensus 75 ~~~~~~lie~~~~~~i~~lq~~~---~~v~alT~~~-~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~ 150 (252)
T PF11019_consen 75 ELRKMELIESDVPNIINSLQNKG---IPVIALTARG-PNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPS 150 (252)
T ss_pred hhcceEEcchhHHHHHHHHHHCC---CcEEEEcCCC-hhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCce
Confidence 33445678889999999999999 9999999976 6677666544 46532111 1111111 11100000
Q ss_pred c-ccc-CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhc
Q 020024 219 I-IEK-VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 264 (332)
Q Consensus 219 ~-~~~-~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A 264 (332)
+ .|- .+.+.+|...|..++...+. .++.+|||-|+.-.+..+..|
T Consensus 151 ~~~GIlft~~~~KG~~L~~fL~~~~~-~pk~IIfIDD~~~nl~sv~~a 197 (252)
T PF11019_consen 151 FYDGILFTGGQDKGEVLKYFLDKINQ-SPKKIIFIDDNKENLKSVEKA 197 (252)
T ss_pred eecCeEEeCCCccHHHHHHHHHHcCC-CCCeEEEEeCCHHHHHHHHHH
Confidence 0 021 35677899999999988776 357999999999888766654
No 146
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.20 E-value=0.0014 Score=60.28 Aligned_cols=50 Identities=28% Similarity=0.409 Sum_probs=39.6
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
++.+.+|..+++-++.+++.+ ..++++.|||-||++||..+..||++++.
T Consensus 160 lP~~a~K~~Al~~L~~~~~~~-~~~vl~aGDSgND~~mL~~~~~~vvV~Na 209 (247)
T PF05116_consen 160 LPKGASKGAALRYLMERWGIP-PEQVLVAGDSGNDLEMLEGGDHGVVVGNA 209 (247)
T ss_dssp EETT-SHHHHHHHHHHHHT---GGGEEEEESSGGGHHHHCCSSEEEE-TTS
T ss_pred ccCCCCHHHHHHHHHHHhCCC-HHHEEEEeCCCCcHHHHcCcCCEEEEcCC
Confidence 344556999999999888764 46899999999999999888889999866
No 147
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.17 E-value=0.0015 Score=61.01 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=37.3
Q ss_pred CCCC-hhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc
Q 020024 154 LSLQ-DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA 200 (332)
Q Consensus 154 i~lr-pg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~ 200 (332)
++|| ||+.++++.|+++| ++++|+|.|- .+.+...|+..|++.
T Consensus 144 v~irdPgV~EaL~~LkekG---ikLaIaTS~~-Re~v~~~L~~lGLd~ 187 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRG---CILVLWSYGD-RDHVVESMRKVKLDR 187 (301)
T ss_pred cccCCHHHHHHHHHHHHCC---CEEEEEECCC-HHHHHHHHHHcCCCc
Confidence 3566 88999999999999 9999999884 889999999999853
No 148
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.12 E-value=0.0016 Score=59.65 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=47.5
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhh-cCeeEEEcCC-hhHHHHhHhcC
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE-ADIGIVIGSS-SSLRRVGSQFG 284 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~-Ad~gvv~~~~-~~L~~~~~~~~ 284 (332)
..+.+|...++.++..++.+ ..+++++|||.||++|++. ++.+|++++. +.+++.+.++.
T Consensus 163 ~~~~~K~~al~~l~~~~~i~-~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~~~~ 224 (249)
T TIGR01485 163 PQGSGKGQALQYLLQKLAME-PSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYDENA 224 (249)
T ss_pred eCCCChHHHHHHHHHHcCCC-ccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHHhcc
Confidence 34567999999998888764 4799999999999999998 6678998865 46666665443
No 149
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.11 E-value=0.016 Score=52.41 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=64.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcC-C-Cc--ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAG-L-NA--LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g-~-~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
...+.||+..+++.|+.+| +++.++|..- ....+..+..++ + .. ..|.+...++. .|+..+
T Consensus 90 ~~~~~PGa~kLv~~L~~~g---ip~alat~s~-~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~----~gKP~P------- 154 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNG---IPVALATSST-SASFELKISRHEDIFKNFSHVVLGDDPEVK----NGKPDP------- 154 (222)
T ss_pred ccccCCcHHHHHHHHHhCC---CCeeEEecCC-cccHHHHHHHhhHHHHhcCCCeecCCcccc----CCCCCc-------
Confidence 5789999999999999999 9999999864 445555555543 1 00 11121222222 222211
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
.....-....+....++++.+.||.+=+.+...|+.-+++-++
T Consensus 155 --di~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 155 --DIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred --hHHHHHHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 1111112222322237899999999999999999987777766
No 150
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0049 Score=53.81 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=69.3
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEcc--cc-CHHH-----------HHHHHHhcCCCcceEEeeeeEEcCceecccc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSY--CW-CGDL-----------IRASFSSAGLNALNVHANEFSFKESISTGEI 219 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~--g~-s~~~-----------I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~ 219 (332)
..+.||..+.+..+++.| +.++|||- |. ...| +...|+..|+....|+...- ..
T Consensus 30 ~~~~~g~i~al~~l~~~g---y~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph---------~p 97 (181)
T COG0241 30 FQFIPGVIPALLKLQRAG---YKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPH---------HP 97 (181)
T ss_pred hccCccHHHHHHHHHhCC---CeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCC---------CC
Confidence 568899999999999999 99999995 10 1222 33334444432222222110 01
Q ss_pred cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEc
Q 020024 220 IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIG 271 (332)
Q Consensus 220 ~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~ 271 (332)
...|.+.--|...+.+++++++.+ ..+.++|||..+|+.++..+++ |+.+.
T Consensus 98 ~~~c~cRKP~~gm~~~~~~~~~iD-~~~s~~VGD~~~Dlq~a~n~gi~~~~~~ 149 (181)
T COG0241 98 EDNCDCRKPKPGMLLSALKEYNID-LSRSYVVGDRLTDLQAAENAGIKGVLVL 149 (181)
T ss_pred CCCCcccCCChHHHHHHHHHhCCC-ccceEEecCcHHHHHHHHHCCCCceEEE
Confidence 112445555778888899888764 4789999999999999999997 44444
No 151
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.09 E-value=0.0057 Score=55.55 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccC--HHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWC--GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s--~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
+.-||+.+|++.++++| +.+++||+=.. ...-..-|.+.|++.. +.+.+.. .+... ......-|..+
T Consensus 115 ~aip~a~~l~~~~~~~G---~~V~~iT~R~~~~r~~T~~nL~~~G~~~~----~~l~lr~---~~~~~-~~~~~~yK~~~ 183 (229)
T PF03767_consen 115 PAIPGALELYNYARSRG---VKVFFITGRPESQREATEKNLKKAGFPGW----DHLILRP---DKDPS-KKSAVEYKSER 183 (229)
T ss_dssp EEETTHHHHHHHHHHTT---EEEEEEEEEETTCHHHHHHHHHHHTTSTB----SCGEEEE---ESSTS-S------SHHH
T ss_pred cccHHHHHHHHHHHHCC---CeEEEEecCCchhHHHHHHHHHHcCCCcc----chhcccc---ccccc-cccccccchHH
Confidence 56788999999999999 99999997421 3333344666676421 1111110 00000 11222347777
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHH
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLC 260 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~ 260 (332)
.+.+.++ .+.-+.+|||..+|+.-
T Consensus 184 r~~i~~~----Gy~Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 184 RKEIEKK----GYRIIANIGDQLSDFSG 207 (229)
T ss_dssp HHHHHHT----TEEEEEEEESSGGGCHC
T ss_pred HHHHHHc----CCcEEEEeCCCHHHhhc
Confidence 7766653 13456699999999987
No 152
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.08 E-value=0.0025 Score=60.68 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHh----cCCCc--ceEEeeeeEEcCceecccccccCCCCcch
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS----AGLNA--LNVHANEFSFKESISTGEIIEKVESPIDK 229 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~----~g~~~--~~I~aN~l~~~~g~~tG~~~~~~~~~~~K 229 (332)
+++|+.++|+.++++| +.+.|+|.+. ...+..+++. .++.. ..+.+| + ..|
T Consensus 32 ~~~~~~e~L~~L~~~G---i~lai~S~n~-~~~a~~~l~~~~~~~~~~~~f~~~~~~------------~-------~pk 88 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQG---FLLALASKND-EDDAKKVFERRKDFILQAEDFDARSIN------------W-------GPK 88 (320)
T ss_pred cHHHHHHHHHHHHhCC---CEEEEEcCCC-HHHHHHHHHhCccccCcHHHeeEEEEe------------c-------Cch
Confidence 4889999999999999 9999999995 8899999987 44321 011111 1 248
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcC-ChhHHHHhHhcCCeeeec
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGS-SSSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~-~~~L~~~~~~~~~~~~p~ 290 (332)
...+++++.+.+.. .+.++||||+..|+.....+.-.|-+.. +..+.+... ..+.|.|.
T Consensus 89 ~~~i~~~~~~l~i~-~~~~vfidD~~~d~~~~~~~lp~~~~~~~~~~~~~~l~-~~~~~~~~ 148 (320)
T TIGR01686 89 SESLRKIAKKLNLG-TDSFLFIDDNPAERANVKITLPVKTLLCDPAELAAILL-FLNELLPL 148 (320)
T ss_pred HHHHHHHHHHhCCC-cCcEEEECCCHHHHHHHHHHCCCCccCCChHHHHHHhc-ccccccCc
Confidence 88888888887764 4799999999999999988764443333 233433332 23444444
No 153
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.0015 Score=68.11 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC--CcceEEeee-eEEcC---c---eecccccc-cC
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL--NALNVHANE-FSFKE---S---ISTGEIIE-KV 223 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~--~~~~I~aN~-l~~~~---g---~~tG~~~~-~~ 223 (332)
-+.|||.++-++.|++.| +.+-.|++.- -.-.+.+..+.|+ +.....|-+ -+|.+ . ...+++.- --
T Consensus 646 DPvRPgV~~AV~~Cq~AG---ItVRMVTGDN-I~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlAR 721 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAG---ITVRMVTGDN-INTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLAR 721 (1034)
T ss_pred CCCCCCcHHHHHHHHHcC---cEEEEEeCCc-HHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeec
Confidence 489999999999999999 9999999853 4455556666675 111111111 11111 0 01111110 12
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
.++.||...++.++.. +.-+..-|||.||-|+|..||+|.+|+=.
T Consensus 722 SSP~DK~lLVk~L~~~-----g~VVAVTGDGTNDaPALkeADVGlAMGIa 766 (1034)
T KOG0204|consen 722 SSPNDKHLLVKGLIKQ-----GEVVAVTGDGTNDAPALKEADVGLAMGIA 766 (1034)
T ss_pred CCCchHHHHHHHHHhc-----CcEEEEecCCCCCchhhhhcccchhcccc
Confidence 5677999988888742 23455789999999999999999998844
No 154
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.02 E-value=0.0024 Score=59.82 Aligned_cols=50 Identities=8% Similarity=0.091 Sum_probs=39.8
Q ss_pred CCCC-hhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcc--eEEeee
Q 020024 154 LSLQ-DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNAL--NVHANE 207 (332)
Q Consensus 154 i~lr-pg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~--~I~aN~ 207 (332)
++|| ||+.++|++|+++| +++.|+|.| +.+.+...++.+|++.. .|+|+.
T Consensus 146 v~irdp~V~EtL~eLkekG---ikLaIvTNg-~Re~v~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 146 VRIRDPFVYDSLDELKERG---CVLVLWSYG-NREHVVHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred cccCChhHHHHHHHHHHCC---CEEEEEcCC-ChHHHHHHHHHcCCCccccEEEECC
Confidence 3466 88889999999999 999999988 48899999999887532 355543
No 155
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.94 E-value=0.0019 Score=55.26 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEcc--ccCH-----------HHHHHHHHhcCCCcceEEeeeeEEcCceeccccccc
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSY--CWCG-----------DLIRASFSSAGLNALNVHANEFSFKESISTGEIIEK 222 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~--g~s~-----------~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~ 222 (332)
+.|++.+.|+.+.+.| +.++|||- |.+. .-|..+++.++++ +.+++-.- . ..+ .+
T Consensus 30 ~~~~v~~~L~~l~~~G---y~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip-~~~~~a~~---~----d~~-RK 97 (159)
T PF08645_consen 30 FPPGVPEALRELHKKG---YKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP-IQVYAAPH---K----DPC-RK 97 (159)
T ss_dssp C-TTHHHHHHHHHHTT---EEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS--EEEEECGC---S----STT-ST
T ss_pred cchhHHHHHHHHHhcC---CeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc-eEEEecCC---C----CCC-CC
Confidence 3456778888899889 99999993 3322 3345556666665 33333110 0 111 12
Q ss_pred CCCCcchHHHHHHHHHHhCC---CCCceEEEEeCCccc
Q 020024 223 VESPIDKVQAFNNTLEKYGT---DRKNLSVYIGDSVGD 257 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~---~~~~~viyiGDs~~D 257 (332)
+.+ -.+..++..++. -...+++||||..+|
T Consensus 98 P~~-----GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 98 PNP-----GMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp TSS-----HHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred Cch-----hHHHHHHHhccccccccccceEEEeccCCC
Confidence 222 233334433322 123689999998666
No 156
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.91 E-value=0.00078 Score=59.43 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=39.6
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEE
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVI 270 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~ 270 (332)
..+.+|...++.++...+.. ..+++++|||.||++|+..++++|+|
T Consensus 159 p~~~~K~~~~~~~~~~~~~~-~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGK-RDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred cCCCChHHHHHHHHHHhCCC-HHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 35678999999999887753 46899999999999999999998875
No 157
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.89 E-value=0.0089 Score=54.47 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=57.2
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHH--HHHHhcCCCc---ceEEeeeeEEcCceecccccccCCCCcc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIR--ASFSSAGLNA---LNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~--~~l~~~g~~~---~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
..+.||+.+++++++++| .+++|+|.+ +..... ..|+.+|++. ..|+++. . .
T Consensus 23 ~~~~pga~e~L~~L~~~G---~~~~ivTN~-~~~~~~~~~~L~~~gl~~~~~~~Ii~s~----------~---------~ 79 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQG---KPVYFVSNS-PRNIFSLHKTLKSLGINADLPEMIISSG----------E---------I 79 (242)
T ss_pred CccCccHHHHHHHHHHCC---CEEEEEeCC-CCChHHHHHHHHHCCCCccccceEEccH----------H---------H
Confidence 457899999999999999 999999987 355554 6777777642 1222211 0 1
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
-...+.+.+.+.+. ....++++||+..|+..+..++
T Consensus 80 ~~~~l~~~~~~~~~-~~~~~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 80 AVQMILESKKRFDI-RNGIIYLLGHLENDIINLMQCY 115 (242)
T ss_pred HHHHHHhhhhhccC-CCceEEEeCCcccchhhhcCCC
Confidence 11344444433332 2357999999999998775433
No 158
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.79 E-value=0.0016 Score=67.23 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=40.9
Q ss_pred CCcchHHHHHHHHHHhCCCCCceEEEE--eCCccchHHhhhcCeeEEEcCC
Q 020024 225 SPIDKVQAFNNTLEKYGTDRKNLSVYI--GDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~~~~viyi--GDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
.+.+|..+++.++..++.. ..+++.+ |||.||++||+.||+||+|+.+
T Consensus 610 ~gvdKG~AL~~L~e~~gI~-~~eViafalGDs~NDisMLe~Ag~gVAM~~~ 659 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLN-FGNIHTFGLGDSENDYSMLETVDSPILVQRP 659 (694)
T ss_pred CCCCHHHHHHHHHHHhCCC-ccceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence 4678999999999888763 2566666 9999999999999999999866
No 159
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.79 E-value=0.1 Score=46.70 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=73.6
Q ss_pred CHHHHHHHhh------cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc--ceEEeeeeEEcCce
Q 020024 143 NLEDIKKAGE------RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA--LNVHANEFSFKESI 214 (332)
Q Consensus 143 ~~~~l~~~~~------~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~--~~I~aN~l~~~~g~ 214 (332)
+.++..+++. .+...+-.++++-.++.+ ...|+|-+. ..-...+|+.+|+.. .-|+|-+
T Consensus 82 d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r-----~k~~FTNa~-k~HA~r~Lk~LGieDcFegii~~e------- 148 (244)
T KOG3109|consen 82 DADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKR-----RKWIFTNAY-KVHAIRILKKLGIEDCFEGIICFE------- 148 (244)
T ss_pred CHHHHHHHhhccCcHhhcCCCHHHHHHHHhCccc-----cEEEecCCc-HHHHHHHHHHhChHHhccceeEee-------
Confidence 3566666553 344555568888888853 277889886 778888899999742 2344422
Q ss_pred ecccccccCCCCcchH--HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee-EEEc
Q 020024 215 STGEIIEKVESPIDKV--QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG-IVIG 271 (332)
Q Consensus 215 ~tG~~~~~~~~~~~K~--~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g-vv~~ 271 (332)
...+.-.+-.||. .+.+......+..++.+++|+-||.+-+...+..|.. ++++
T Consensus 149 ---~~np~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~ 205 (244)
T KOG3109|consen 149 ---TLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVG 205 (244)
T ss_pred ---ccCCCCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEE
Confidence 1111111222442 5566666666776678999999999999999999984 4444
No 160
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=96.79 E-value=0.027 Score=51.10 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=55.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHH---HHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcch
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL---IRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDK 229 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~---I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K 229 (332)
..+.-|++.+|++.++++| +.++++|+=. ... ....|..+|++.. ..|...+. +. . ......-|
T Consensus 118 ~apaip~al~l~~~l~~~G---~~Vf~lTGR~-e~~r~~T~~nL~~~G~~~~----~~LiLR~~---~d-~-~~~~~~yK 184 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELG---IKIFLLSGRW-EELRNATLDNLINAGFTGW----KHLILRGL---ED-S-NKTVVTYK 184 (229)
T ss_pred CCCCCHHHHHHHHHHHHCC---CEEEEEcCCC-hHHHHHHHHHHHHcCCCCc----CeeeecCC---CC-C-CchHhHHH
Confidence 4577899999999999999 9999999852 333 5566777787531 22222210 00 0 00111126
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCCccchHH
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDSVGDLLC 260 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~ 260 (332)
..+.+++.++ .+.-+..+||-.+|+.-
T Consensus 185 s~~R~~l~~~----GYrIv~~iGDq~sDl~G 211 (229)
T TIGR01675 185 SEVRKSLMEE----GYRIWGNIGDQWSDLLG 211 (229)
T ss_pred HHHHHHHHhC----CceEEEEECCChHHhcC
Confidence 6666666542 23345589999999943
No 161
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.53 E-value=0.0026 Score=59.02 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=42.0
Q ss_pred CCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhc----CeeEEEcCCh
Q 020024 225 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA----DIGIVIGSSS 274 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A----d~gvv~~~~~ 274 (332)
.+.+|...+++++...+.. .+.++|+||+.||..|+..+ +++|.|+...
T Consensus 171 ~g~~Kg~al~~ll~~~~~~-~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~ 223 (266)
T PRK10187 171 RGTNKGEAIAAFMQEAPFA-GRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA 223 (266)
T ss_pred CCCCHHHHHHHHHHhcCCC-CCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC
Confidence 3668999999999887753 46899999999999999999 8899998653
No 162
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=96.32 E-value=0.003 Score=54.19 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=57.9
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcC-ceec-ccccccCCCCcchH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKE-SIST-GEIIEKVESPIDKV 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~-g~~t-G~~~~~~~~~~~K~ 230 (332)
.+..|||+.+|++.+.+. ++++|.|++- ..+++.+++.++... ..+...+ +.+ ...+ |.+ -|.
T Consensus 40 ~v~~RPgl~eFL~~l~~~----yei~I~Ts~~-~~yA~~il~~ldp~~-~~f~~~l-~r~~~~~~~~~~--------~K~ 104 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW----YELVIFTASL-EEYADPVLDILDRGG-KVISRRL-YRESCVFTNGKY--------VKD 104 (162)
T ss_pred EEEECCCHHHHHHHHHhc----CEEEEEcCCc-HHHHHHHHHHHCcCC-CEEeEEE-EccccEEeCCCE--------EeE
Confidence 368999999999999864 8999999994 999999998876421 1222221 111 1111 111 111
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
|. ..+. ...++|+|||+..|+.+...+++
T Consensus 105 --L~----~l~~-~~~~vIiVDD~~~~~~~~~~NgI 133 (162)
T TIGR02251 105 --LS----LVGK-DLSKVIIIDNSPYSYSLQPDNAI 133 (162)
T ss_pred --ch----hcCC-ChhhEEEEeCChhhhccCccCEe
Confidence 11 1121 23689999999998866655543
No 163
>PTZ00174 phosphomannomutase; Provisional
Probab=96.29 E-value=0.0043 Score=56.81 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=40.3
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeC----CccchHHhhhc---CeeEEEcCChhHHHHhHh
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGD----SVGDLLCLLEA---DIGIVIGSSSSLRRVGSQ 282 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD----s~~Dl~~l~~A---d~gvv~~~~~~L~~~~~~ 282 (332)
...+.+|...|+.++.. .++++++|| +.||++|++.| +++|. ++.+.++.+|+-
T Consensus 183 ~~~gvsKg~al~~L~~~-----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~-n~~~~~~~~~~~ 243 (247)
T PTZ00174 183 FPKGWDKTYCLRHLEND-----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK-NPEDTIKILKEL 243 (247)
T ss_pred eeCCCcHHHHHHHHHhh-----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeC-CHHHHHHHHHHH
Confidence 44567899999988875 268999999 89999999954 44444 445667766654
No 164
>PLN02423 phosphomannomutase
Probab=95.82 E-value=0.016 Score=53.17 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=45.6
Q ss_pred cCCCCcchHHHHHHHHHHhCCCCCceEEEEeC----CccchHHhhhcCe-eEEEcCChhHHHHhHh
Q 020024 222 KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD----SVGDLLCLLEADI-GIVIGSSSSLRRVGSQ 282 (332)
Q Consensus 222 ~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD----s~~Dl~~l~~Ad~-gvv~~~~~~L~~~~~~ 282 (332)
-...+.+|...|+.++ ..++++++|| +.||++||+..++ ++.+.+.+.+...|.+
T Consensus 183 i~~~gvnKg~al~~L~------~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
T PLN02423 183 VFPQGWDKTYCLQFLE------DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDDTREQCTA 242 (245)
T ss_pred EeeCCCCHHHHHHHhc------CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHHHHHHHHH
Confidence 3455778999999988 1379999999 8999999998555 8889988888888875
No 165
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=95.63 E-value=0.038 Score=50.44 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhc
Q 020024 225 SPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA 264 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A 264 (332)
.+.+|...++.++...+.. ...++|+||+.||..|+..+
T Consensus 164 ~~~~Kg~a~~~~~~~~~~~-~~~~i~iGD~~~D~~~~~~~ 202 (244)
T TIGR00685 164 RFVNKGEIVKRLLWHQPGS-GISPVYLGDDITDEDAFRVV 202 (244)
T ss_pred CCCCHHHHHHHHHHhcccC-CCceEEEcCCCcHHHHHHHH
Confidence 3668999999999887653 36899999999999999998
No 166
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=95.51 E-value=0.023 Score=58.38 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAF 233 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l 233 (332)
+.=|.++..-+..+|.++ ....|+++. |-+|--...+.. + .++.|- ++ ...+.-|++..|.++.
T Consensus 710 v~sr~dah~eL~~lR~k~---~~aLvi~G~-Sl~~cl~yye~E-f--~el~~~--------~~-aVv~CRctPtQKA~v~ 773 (1051)
T KOG0210|consen 710 VTSRGDAHNELNNLRRKT---DCALVIDGE-SLEFCLKYYEDE-F--IELVCE--------LP-AVVCCRCTPTQKAQVV 773 (1051)
T ss_pred cCCchHHHHHHHHhhcCC---CcEEEEcCc-hHHHHHHHHHHH-H--HHHHHh--------cC-cEEEEecChhHHHHHH
Confidence 455777888888888776 677778763 222222211110 0 111110 00 0111235667799888
Q ss_pred HHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 234 NNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 234 ~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
+-+.+..+ ..+.+||||-||.-|++.||+||-+-++
T Consensus 774 ~llq~~t~----krvc~IGDGGNDVsMIq~A~~GiGI~gk 809 (1051)
T KOG0210|consen 774 RLLQKKTG----KRVCAIGDGGNDVSMIQAADVGIGIVGK 809 (1051)
T ss_pred HHHHHhhC----ceEEEEcCCCccchheeecccceeeecc
Confidence 86665532 6899999999999999999887766544
No 167
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.42 E-value=0.083 Score=43.54 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=30.4
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC
Q 020024 151 GERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 198 (332)
Q Consensus 151 ~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 198 (332)
+..+.|+|.++++++|++..| +-+...|=|+ .+-.-.+|+.+++
T Consensus 37 G~ev~L~~~v~~~l~warnsG---~i~~~~sWN~-~~kA~~aLral~~ 80 (164)
T COG4996 37 GREVHLFPDVKETLKWARNSG---YILGLASWNF-EDKAIKALRALDL 80 (164)
T ss_pred CeEEEEcHHHHHHHHHHHhCC---cEEEEeecCc-hHHHHHHHHHhch
Confidence 346899999999999999988 6555554443 3334445666665
No 168
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=95.27 E-value=0.18 Score=55.33 Aligned_cols=63 Identities=25% Similarity=0.369 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCCh----------------hHHHHhHhcC-Ceee
Q 020024 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSS----------------SLRRVGSQFG-VTFI 288 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~----------------~L~~~~~~~~-~~~~ 288 (332)
+..|..+++-.+.. ....+.+||||.||..|++.||+||.+...+ .|.++..-+| |.+.
T Consensus 779 PlQKA~Vv~lVk~~----~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQAvmsSD~AIaqFrfL~rLLLVHGhW~Y~ 854 (1151)
T KOG0206|consen 779 PLQKALVVKLVKKG----LKAVTLAIGDGANDVSMIQEAHVGVGISGQEGMQAVMSSDFAIAQFRFLERLLLVHGHWSYI 854 (1151)
T ss_pred HHHHHHHHHHHHhc----CCceEEEeeCCCccchheeeCCcCeeeccchhhhhhhcccchHHHHHHHhhhheeecceeHH
Confidence 45677777765332 1357899999999999999999999888663 4555555566 6666
Q ss_pred ecCc
Q 020024 289 PLYP 292 (332)
Q Consensus 289 p~~~ 292 (332)
.++.
T Consensus 855 R~a~ 858 (1151)
T KOG0206|consen 855 RLAK 858 (1151)
T ss_pred HHHH
Confidence 5554
No 169
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=95.27 E-value=0.3 Score=45.40 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=51.7
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccC--HHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWC--GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQ 231 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s--~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~ 231 (332)
.+--||+.+|++.++++| +.+++||+=-. ...-..-|.+.|++. . ..|...+. +.- .......-|..
T Consensus 144 ApAlp~al~ly~~l~~~G---~kIf~VSgR~e~~r~aT~~NL~kaGy~~---~-~~LiLR~~---~D~-~~~~av~yKs~ 212 (275)
T TIGR01680 144 APALPETLKNYNKLVSLG---FKIIFLSGRLKDKQAVTEANLKKAGYHT---W-EKLILKDP---QDN-SAENAVEYKTA 212 (275)
T ss_pred CCCChHHHHHHHHHHHCC---CEEEEEeCCchhHHHHHHHHHHHcCCCC---c-ceeeecCC---CCC-ccchhHHHHHH
Confidence 456679999999999999 99999997420 223334456667642 1 22222210 000 00111123555
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchH
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLL 259 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~ 259 (332)
..+++.++ .+.-+..+||-.+|+.
T Consensus 213 ~R~~li~e----GYrIv~~iGDq~sDl~ 236 (275)
T TIGR01680 213 ARAKLIQE----GYNIVGIIGDQWNDLK 236 (275)
T ss_pred HHHHHHHc----CceEEEEECCCHHhcc
Confidence 44554432 2344558999999994
No 170
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=95.21 E-value=0.17 Score=46.00 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=74.1
Q ss_pred CCCHHHHHHHhh--cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHH----HHHHHHhcCCCcceEEeeeeEEcCce
Q 020024 141 GINLEDIKKAGE--RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDL----IRASFSSAGLNALNVHANEFSFKESI 214 (332)
Q Consensus 141 G~~~~~l~~~~~--~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~----I~~~l~~~g~~~~~I~aN~l~~~~g~ 214 (332)
|.+.+....+++ ....-||+.||++...++| ..++-||.- ..+- -..-|.+.|++... =-.+.+.
T Consensus 106 ~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~G---g~ifyiSNR-~~~~~~~~T~~nLk~~g~~~~~--~~~~llk--- 176 (274)
T COG2503 106 GFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNG---GKIFYISNR-DQENEKDGTIENLKSEGLPQVL--ESHLLLK--- 176 (274)
T ss_pred CCCccchHHHHhhcccccCccHHHHHHHHHhcC---cEEEEEecc-chhcccchhHHHHHHcCccccc--ccceEEe---
Confidence 345555555543 3567799999999999999 899999963 2222 22234455664210 0001110
Q ss_pred ecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHhcCCeeeecC
Q 020024 215 STGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLY 291 (332)
Q Consensus 215 ~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~ 291 (332)
.....|..+.+..... +..|.+|||...|+.-....+- ---....+.+..+.+|-.|+=+-
T Consensus 177 ---------k~~k~Ke~R~~~v~k~-----~~iVm~vGDNl~DF~d~~~k~~--~~eR~Alv~~~~~~FGk~~Ii~p 237 (274)
T COG2503 177 ---------KDKKSKEVRRQAVEKD-----YKIVMLVGDNLDDFGDNAYKKA--EAERRALVKQNQKKFGKKFIILP 237 (274)
T ss_pred ---------eCCCcHHHHHHHHhhc-----cceeeEecCchhhhcchhhhhh--hHHHHHHHHHHHHHhCceEEEec
Confidence 1112366666655442 3568899999999976655541 11112357777888887776443
No 171
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=94.91 E-value=0.49 Score=43.31 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCc
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNA 200 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~ 200 (332)
+.|++++++| ++++|+|+. +-..+...++.++++.
T Consensus 27 ~al~~~~~~g---~~v~iaTGR-~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 27 EALARLREKG---VKVVLATGR-PLPDVLSILEELGLDG 61 (264)
T ss_pred HHHHHHHHCC---CEEEEECCC-ChHHHHHHHHHcCCCc
Confidence 4566778888 999999987 4678888888888753
No 172
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.83 E-value=0.14 Score=47.41 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN 199 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~ 199 (332)
+.|++++++| ++++|.|+- +...+.+.++.+|++
T Consensus 31 ~ai~~l~~~G---i~~viaTGR-~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 31 PWLTRLREAQ---VPVILCSSK-TAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHcC---CeEEEEcCC-CHHHHHHHHHHhCCC
Confidence 3456678888 999999987 477788888888874
No 173
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.13 Score=54.14 Aligned_cols=112 Identities=10% Similarity=0.078 Sum_probs=65.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC-c-c-------eEEeeeeEEc--Cceecccccc
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN-A-L-------NVHANEFSFK--ESISTGEIIE 221 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~-~-~-------~I~aN~l~~~--~g~~tG~~~~ 221 (332)
+.+++|..++.|+.+...+ ++++.|++- +.--..++.+..|+- . . .--.|++.+. ||...-.+.+
T Consensus 673 ~CPlK~Ds~~~I~el~~SS---H~vvMITGD-npLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p 748 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSS---HRVVMITGD-NPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKP 748 (1160)
T ss_pred eCCCCccHHHHHHHHhccC---ceEEEEeCC-CccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCC
Confidence 5899999999999999877 999999974 233334444444431 0 0 0122344442 1211100000
Q ss_pred ------------cCCCC---------------------------cchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhh
Q 020024 222 ------------KVESP---------------------------IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLL 262 (332)
Q Consensus 222 ------------~~~~~---------------------------~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~ 262 (332)
-|.+| ..|...+..+.. .+..+...|||.||.-+|+
T Consensus 749 ~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~-----~Gy~TLMCGDGTNDVGALK 823 (1160)
T KOG0209|consen 749 GKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKK-----LGYVTLMCGDGTNDVGALK 823 (1160)
T ss_pred CccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHh-----cCeEEEEecCCCcchhhhh
Confidence 01111 123333332221 2467899999999999999
Q ss_pred hcCeeEEEcCC
Q 020024 263 EADIGIVIGSS 273 (332)
Q Consensus 263 ~Ad~gvv~~~~ 273 (332)
+|++||+.-.+
T Consensus 824 ~AhVGVALL~~ 834 (1160)
T KOG0209|consen 824 QAHVGVALLNN 834 (1160)
T ss_pred hcccceehhcC
Confidence 99999987655
No 174
>PLN02580 trehalose-phosphatase
Probab=94.68 E-value=0.1 Score=50.92 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCcchHHHHHHHHHHhCCCCCce--EEEEeCCccchHHhhh-----cCeeEEEcC
Q 020024 225 SPIDKVQAFNNTLEKYGTDRKNL--SVYIGDSVGDLLCLLE-----ADIGIVIGS 272 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~~~~--viyiGDs~~Dl~~l~~-----Ad~gvv~~~ 272 (332)
.+.+|...++.++...+....+. .+|+||+.||..|++. +++||+++.
T Consensus 298 ~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vgn 352 (384)
T PLN02580 298 IDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSS 352 (384)
T ss_pred CCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEec
Confidence 36789999999998876532222 4899999999999996 477887774
No 175
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=94.23 E-value=0.17 Score=45.06 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN 199 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~ 199 (332)
+.|+.++++| ++++|+|+. +...+..+++.++++
T Consensus 23 ~~l~~l~~~g---i~~~i~TgR-~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 23 PWLTRLQEAG---IPVILCTSK-TAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCCC
Confidence 3556677778 999999998 488899999888764
No 176
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=94.09 E-value=0.72 Score=42.18 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeee
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 208 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 208 (332)
+.|+.++++| +.++|.|+-. ...+...++.++++..-|.+|-.
T Consensus 27 ~ai~~~~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~~~~I~~NGa 69 (272)
T PRK10530 27 EALARAREAG---YKVIIVTGRH-HVAIHPFYQALALDTPAICCNGT 69 (272)
T ss_pred HHHHHHHHCC---CEEEEEcCCC-hHHHHHHHHhcCCCCCEEEcCCc
Confidence 3456678888 9999999863 66677788887764323445543
No 177
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=94.06 E-value=0.24 Score=44.22 Aligned_cols=41 Identities=17% Similarity=0.016 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEee
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHAN 206 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN 206 (332)
+.|+.++++| ++++|.|+- +...+.+.+..++++..-|.+|
T Consensus 27 ~al~~l~~~G---~~~~iaTGR-~~~~~~~~~~~l~~~~~~i~~n 67 (230)
T PRK01158 27 EAIRKAEKLG---IPVILATGN-VLCFARAAAKLIGTSGPVIAEN 67 (230)
T ss_pred HHHHHHHHCC---CEEEEEcCC-chHHHHHHHHHhCCCCcEEEec
Confidence 3455677778 999999986 3666777777777643233344
No 178
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=94.05 E-value=0.67 Score=42.65 Aligned_cols=43 Identities=7% Similarity=0.046 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeee
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 208 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 208 (332)
+.|++++++| +.++|.|+- +...+...++.++++..-|.+|-.
T Consensus 26 ~ai~~l~~~G---~~~~iaTGR-~~~~~~~~~~~l~~~~~~I~~NGa 68 (272)
T PRK15126 26 STLARLRERD---ITLTFATGR-HVLEMQHILGALSLDAYLITGNGT 68 (272)
T ss_pred HHHHHHHHCC---CEEEEECCC-CHHHHHHHHHHcCCCCcEEecCCc
Confidence 3466678888 999999986 466778888887765323445543
No 179
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=94.03 E-value=0.12 Score=54.50 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=22.4
Q ss_pred eEEEEeCCccchHHhhhcCeeEEEc
Q 020024 247 LSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 247 ~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
-|-..|||.||-|+|+.||+||+++
T Consensus 707 iVaVTGDGVNDsPALKKADIGVAMG 731 (1019)
T KOG0203|consen 707 IVAVTGDGVNDSPALKKADIGVAMG 731 (1019)
T ss_pred EEEEeCCCcCCChhhcccccceeec
Confidence 3447899999999999999999996
No 180
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=93.93 E-value=0.28 Score=42.61 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccCHH---HHHHHHHh-cCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHH
Q 020024 160 CTTFFQKVVKNENLNANVHVLSYCWCGD---LIRASFSS-AGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNN 235 (332)
Q Consensus 160 ~~e~l~~l~~~g~~~~~~~IvS~g~s~~---~I~~~l~~-~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~ 235 (332)
++.+|+.++++| ..++.|++- +.- -+...|++ +.+.+ -|.+.|.+.+ +-....+|...++.
T Consensus 119 A~qLI~MHq~RG---D~i~FvTGR-t~gk~d~vsk~Lak~F~i~~----m~pv~f~Gdk-------~k~~qy~Kt~~i~~ 183 (237)
T COG3700 119 ARQLIDMHQRRG---DAIYFVTGR-TPGKTDTVSKTLAKNFHITN----MNPVIFAGDK-------PKPGQYTKTQWIQD 183 (237)
T ss_pred HHHHHHHHHhcC---CeEEEEecC-CCCcccccchhHHhhcccCC----CcceeeccCC-------CCcccccccHHHHh
Confidence 567999999999 999999974 222 12222322 11111 1222332221 11233457655542
Q ss_pred HHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 236 TLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 236 ~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
. ..-|.||||-+|+.+++.|+.
T Consensus 184 ----~-----~~~IhYGDSD~Di~AAkeaG~ 205 (237)
T COG3700 184 ----K-----NIRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred ----c-----CceEEecCCchhhhHHHhcCc
Confidence 1 356899999999999999986
No 181
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.90 E-value=0.26 Score=45.57 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeee
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANE 207 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~ 207 (332)
+.|+.++++| ++++|+|+.. ...+...++.+|+....|..|-
T Consensus 28 ~ai~~l~~~G---i~~~iaTgR~-~~~~~~~~~~l~l~~~~i~~nG 69 (273)
T PRK00192 28 PALKALKEKG---IPVIPCTSKT-AAEVEVLRKELGLEDPFIVENG 69 (273)
T ss_pred HHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCCCCEEEEcC
Confidence 4566778888 9999999874 6778888888887533444444
No 182
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=93.70 E-value=0.17 Score=37.18 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCC-ccchHHhhhcCe-eEEEcCC
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADI-GIVIGSS 273 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~-gvv~~~~ 273 (332)
..+...+...+.. ..++++|||+ .+|+.+...+++ +|.+..+
T Consensus 8 ~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG 51 (75)
T PF13242_consen 8 GMLEQALKRLGVD-PSRCVMVGDSLETDIEAAKAAGIDTILVLTG 51 (75)
T ss_dssp HHHHHHHHHHTSG-GGGEEEEESSTTTHHHHHHHTTSEEEEESSS
T ss_pred HHHHHHHHHcCCC-HHHEEEEcCCcHhHHHHHHHcCCcEEEECCC
Confidence 4555566666553 4789999999 999999999998 5666644
No 183
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.12 E-value=1.3 Score=40.62 Aligned_cols=34 Identities=6% Similarity=-0.117 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN 199 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~ 199 (332)
+.|++++++| +.++|.|+-. ..-+...++.++++
T Consensus 27 ~ai~~l~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~ 60 (270)
T PRK10513 27 QAIAAARAKG---VNVVLTTGRP-YAGVHRYLKELHME 60 (270)
T ss_pred HHHHHHHHCC---CEEEEecCCC-hHHHHHHHHHhCCC
Confidence 4466778888 9999999863 66777788877764
No 184
>PRK10976 putative hydrolase; Provisional
Probab=93.04 E-value=0.43 Score=43.69 Aligned_cols=34 Identities=0% Similarity=-0.164 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN 199 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~ 199 (332)
+.|++++++| +.++|.|+- +...+...++.++++
T Consensus 26 ~ai~~l~~~G---~~~~iaTGR-~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 26 ETLKLLTARG---IHFVFATGR-HHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHHHHHHCC---CEEEEEcCC-ChHHHHHHHHhcCCC
Confidence 3456677778 899999876 355667777777764
No 185
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=93.03 E-value=0.36 Score=42.33 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHh
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSS 195 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~ 195 (332)
+.|+.++++| +.++|+|+. +...+...+..
T Consensus 24 ~~l~~l~~~g---~~~~i~TGR-~~~~~~~~~~~ 53 (204)
T TIGR01484 24 EALERLREAG---VKVVLVTGR-SLAEIKELLKQ 53 (204)
T ss_pred HHHHHHHHCC---CEEEEECCC-CHHHHHHHHHh
Confidence 4566677777 899999987 47777777765
No 186
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.84 E-value=0.09 Score=47.16 Aligned_cols=43 Identities=28% Similarity=0.230 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhCCCCCc-eEEEEeCCccchHHhhhcCeeEEEc
Q 020024 229 KVQAFNNTLEKYGTDRKN-LSVYIGDSVGDLLCLLEADIGIVIG 271 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~-~viyiGDs~~Dl~~l~~Ad~gvv~~ 271 (332)
|-++.+-++..+...... .++.+|||.||+|+++..|.++++.
T Consensus 192 Kg~Aa~~ll~~y~rl~~~r~t~~~GDg~nD~Pl~ev~d~AfiV~ 235 (274)
T COG3769 192 KGQAANWLLETYRRLGGARTTLGLGDGPNDAPLLEVMDYAFIVK 235 (274)
T ss_pred ccHHHHHHHHHHHhcCceeEEEecCCCCCcccHHHhhhhheeec
Confidence 444444444332221223 4889999999999999999988887
No 187
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=92.62 E-value=0.9 Score=43.78 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=67.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhc-C-------CCc--ceEE--eeeeEE-cCce-----
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSA-G-------LNA--LNVH--ANEFSF-KESI----- 214 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~-g-------~~~--~~I~--aN~l~~-~~g~----- 214 (332)
-+...||+.++|+.++++| .++.|+|.+- ..+++.+++.+ | +.. ..|+ |+...| .++.
T Consensus 182 yv~~~pgl~elL~~Lr~~G---~klfLvTNS~-~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v 257 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHG---KKLFLLTNSD-YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQV 257 (343)
T ss_pred HhccchhHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEE
Confidence 3677999999999999999 9999999984 88999888875 4 211 1233 222222 2111
Q ss_pred --ecccc--------cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCc-cchHHhh-hcCe-eEEEcC
Q 020024 215 --STGEI--------IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLL-EADI-GIVIGS 272 (332)
Q Consensus 215 --~tG~~--------~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~-~Ad~-gvv~~~ 272 (332)
.+|.. .+.-....+-...+.+.+. . ...+++||||.. +|+.... .++. .+.+.+
T Consensus 258 ~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~---~-~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 258 DVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLK---W-RGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred eCCCCcccCCccccccCCCeEeCCCHHHHHHHHC---C-CCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 11211 1111111233344444443 2 247899999974 7888777 6776 455554
No 188
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=92.55 E-value=0.11 Score=55.00 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=37.9
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhc---CeeEEEcCCh
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEA---DIGIVIGSSS 274 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~A---d~gvv~~~~~ 274 (332)
..+.+|...++.+++.. ..+.++++||+.||.+|++.+ +++|.++..+
T Consensus 653 p~~vnKG~al~~ll~~~---~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~~ 703 (726)
T PRK14501 653 PAGVNKGRAVRRLLEAG---PYDFVLAIGDDTTDEDMFRALPETAITVKVGPGE 703 (726)
T ss_pred ECCCCHHHHHHHHHhcC---CCCEEEEECCCCChHHHHHhcccCceEEEECCCC
Confidence 33567999999988732 246899999999999999986 5688887653
No 189
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=92.19 E-value=0.82 Score=39.34 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=63.2
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
.....|...+.+..++.+| +.++|+|-+ +..=+..+++++|++. |+. .++ +. ...
T Consensus 44 ~~~~tpe~~~W~~e~k~~g---i~v~vvSNn-~e~RV~~~~~~l~v~f--i~~----------A~K---P~------~~~ 98 (175)
T COG2179 44 NPDATPELRAWLAELKEAG---IKVVVVSNN-KESRVARAAEKLGVPF--IYR----------AKK---PF------GRA 98 (175)
T ss_pred CCCCCHHHHHHHHHHHhcC---CEEEEEeCC-CHHHHHhhhhhcCCce--eec----------ccC---cc------HHH
Confidence 3567788889999999999 999999976 6888888888887631 111 011 11 134
Q ss_pred HHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCe
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI 266 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~ 266 (332)
+++.+.+.+.+ .++++.|||.. ||+.....+++
T Consensus 99 fr~Al~~m~l~-~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 99 FRRALKEMNLP-PEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHHHcCCC-hhHEEEEcchhhhhhhcccccCc
Confidence 45555556653 47999999995 99998888887
No 190
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=91.83 E-value=0.22 Score=45.23 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCceEEEEeCC-ccchHHhhhcCeeE
Q 020024 230 VQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADIGI 268 (332)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~gv 268 (332)
...++..+.+.+.....++++|||+ .+|+.+...+++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 198 PAIFHKALKECSNIPKNRMLMVGDSFYTDILGANRLGIDT 237 (242)
T ss_pred HHHHHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCeE
Confidence 3455555655553223589999999 69999999999743
No 191
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=91.71 E-value=1.9 Score=43.48 Aligned_cols=126 Identities=12% Similarity=0.004 Sum_probs=79.0
Q ss_pred HhhhcCCCCHHHHHHHhhcC--CC-Chh-HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEE
Q 020024 135 ESGVLKGINLEDIKKAGERL--SL-QDG-CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSF 210 (332)
Q Consensus 135 ~~~~f~G~~~~~l~~~~~~i--~l-rpg-~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~ 210 (332)
-.-.|.|+.+++++ .++.+ ++ -++ -.|-++-.+..+ .-++||+.- .-+++++++.+ +..+.|++.|++.
T Consensus 107 ~~v~f~Gl~~~~~~-v~ravLPkf~~~dv~~e~~~v~~~~~----~~~vv~~~P-rvMve~Flkey-l~~d~V~g~El~~ 179 (525)
T PLN02588 107 VMLSFFGVKKESFR-AGKAVLPKYFLEDVGLEMFQVLKRGG----KRVGVSDLP-QVMIDVFLRDY-LEIEVVVGRDMKM 179 (525)
T ss_pred HHHhhcCCcHHHhh-hHHhhccHHHHhhcCHHHHHHHhhcC----cEEEEecCC-HHHHHHHHHHh-cCcceEeeeeEEE
Confidence 35668899988776 44421 11 111 234444444444 566777764 88899999765 2336899999999
Q ss_pred cCceecccccccCCCCcchHHHHHH-HHHHhCCCCCceEEEEeCC---ccchHHhhhcCeeEEEcCC
Q 020024 211 KESISTGEIIEKVESPIDKVQAFNN-TLEKYGTDRKNLSVYIGDS---VGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 211 ~~g~~tG~~~~~~~~~~~K~~~l~~-~~~~~~~~~~~~viyiGDs---~~Dl~~l~~Ad~gvv~~~~ 273 (332)
..|.+||-.. +.+|.....+ +.... .......+-+||+ .+|...+..+..+.++.+.
T Consensus 180 ~~g~~tG~~~-----~~~~~~~~~~~~~~~~-~~~~~~~vG~~~~~~~~~~~~f~~~CkE~y~v~~~ 240 (525)
T PLN02588 180 VGGYYLGIME-----DKKKHELAFDKVVQEE-RLNSGRLIGITSFNSPSHRSLFSQFCQEIYFVRNS 240 (525)
T ss_pred eeeEEEEEEc-----ccchHHHHHHHHhccc-CcccccceeecccCcccccchhHHhCcceEEeChh
Confidence 8899999665 3456655444 33211 0012348899998 7888888777766666654
No 192
>PLN02645 phosphoglycolate phosphatase
Probab=91.26 E-value=1.2 Score=42.17 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHH
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQA 232 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~ 232 (332)
.+.||+.++|+.++++| .+++++|.+- +..-+..-|+.+|++. . .+.+++.. ..
T Consensus 44 ~~~~ga~e~l~~lr~~g---~~~~~~TN~~~~~~~~~~~~l~~lGi~~--------~-~~~I~ts~------------~~ 99 (311)
T PLN02645 44 KLIEGVPETLDMLRSMG---KKLVFVTNNSTKSRAQYGKKFESLGLNV--------T-EEEIFSSS------------FA 99 (311)
T ss_pred ccCcCHHHHHHHHHHCC---CEEEEEeCCCCCCHHHHHHHHHHCCCCC--------C-hhhEeehH------------HH
Confidence 35699999999999999 9999999862 1222233345566521 0 01122211 12
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
+..++...+.. ....+|++++.+|...++.+++
T Consensus 100 ~~~~l~~~~~~-~~~~V~viG~~~~~~~l~~~Gi 132 (311)
T PLN02645 100 AAAYLKSINFP-KDKKVYVIGEEGILEELELAGF 132 (311)
T ss_pred HHHHHHhhccC-CCCEEEEEcCHHHHHHHHHCCC
Confidence 23333322211 1235888888888888887775
No 193
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=90.66 E-value=1.2 Score=46.60 Aligned_cols=41 Identities=10% Similarity=-0.057 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeee
Q 020024 163 FFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANE 207 (332)
Q Consensus 163 ~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~ 207 (332)
.|+.++++| ++++|.|+- +...+...++.++++..-|.+|-
T Consensus 441 AL~~L~ekG---I~~VIATGR-s~~~i~~l~~~Lgl~~~~I~eNG 481 (694)
T PRK14502 441 ALRLLKDKE---LPLVFCSAK-TMGEQDLYRNELGIKDPFITENG 481 (694)
T ss_pred HHHHHHHcC---CeEEEEeCC-CHHHHHHHHHHcCCCCeEEEcCC
Confidence 355667778 999999987 47778888887776422334443
No 194
>PTZ00445 p36-lilke protein; Provisional
Probab=90.55 E-value=1.8 Score=38.83 Aligned_cols=111 Identities=12% Similarity=0.216 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccCHH----------------HHHHHHHhcCC--CcceEEeeeeE-EcC-ce
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGD----------------LIRASFSSAGL--NALNVHANEFS-FKE-SI 214 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~----------------~I~~~l~~~g~--~~~~I~aN~l~-~~~-g~ 214 (332)
.++|.++.++..+++.| ++++|||-+ +. +|+..|+.-+. ....++|=-.. ++. ..
T Consensus 75 ~~tpefk~~~~~l~~~~---I~v~VVTfS--d~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~ 149 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSN---IKISVVTFS--DKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSD 149 (219)
T ss_pred cCCHHHHHHHHHHHHCC---CeEEEEEcc--chhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhh
Confidence 36889999999999998 999999863 33 77777764332 11234432111 111 11
Q ss_pred ecc-cccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEcCC
Q 020024 215 STG-EIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSS 273 (332)
Q Consensus 215 ~tG-~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~~~ 273 (332)
|.. ... -+....|.-.+++++.+.+.. +++++||=|+..-+.++...|+ ++.+.+.
T Consensus 150 y~~~gl~--KPdp~iK~yHle~ll~~~gl~-peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 150 YRPLGLD--APMPLDKSYHLKQVCSDFNVN-PDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hhhhccc--CCCccchHHHHHHHHHHcCCC-HHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 110 000 122334667789999988874 5899999999999999999997 5555543
No 195
>PLN02887 hydrolase family protein
Probab=89.72 E-value=4.6 Score=41.81 Aligned_cols=33 Identities=6% Similarity=0.043 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 198 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 198 (332)
+.|+.++++| +.++|.|+- +..-+...++.+++
T Consensus 332 eAI~kl~ekG---i~~vIATGR-~~~~i~~~l~~L~l 364 (580)
T PLN02887 332 KALKEALSRG---VKVVIATGK-ARPAVIDILKMVDL 364 (580)
T ss_pred HHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHhCc
Confidence 4466778888 999999986 36667777777665
No 196
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=89.49 E-value=0.76 Score=41.82 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=12.9
Q ss_pred ceEEEEeCCCCcccc
Q 020024 31 RLIIFSDFDLTCTIV 45 (332)
Q Consensus 31 ~~lvi~DFD~TiT~~ 45 (332)
+++|++|+||||++.
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 468999999999974
No 197
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=89.24 E-value=0.25 Score=48.47 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=26.2
Q ss_pred cccccccccCCCCCCceEEEEeCCCCcccccchHHHHHH
Q 020024 16 PTVVPLIKGHNPAGDRLIIFSDFDLTCTIVDSSAILAEI 54 (332)
Q Consensus 16 ~~~~~~~~~~~~~~~~~lvi~DFD~TiT~~Dt~~~l~~~ 54 (332)
.+++-+-... ++..+.+||+|.|||||+.|...-+-.+
T Consensus 361 ~a~~t~~ifv-wr~n~kiVVsDiDGTITkSD~~Ghv~~m 398 (580)
T COG5083 361 KAIATMYIFV-WRNNKKIVVSDIDGTITKSDALGHVKQM 398 (580)
T ss_pred ccEEEEEEEE-EeCCCcEEEEecCCcEEehhhHHHHHHH
Confidence 3444444443 4456779999999999999987555444
No 198
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=88.86 E-value=2.1 Score=33.69 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=44.3
Q ss_pred cEEEEccc---cCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEe
Q 020024 176 NVHVLSYC---WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIG 252 (332)
Q Consensus 176 ~~~IvS~g---~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiG 252 (332)
|+.=||++ . ..++..+++.+|++.-.++-.++ ++..++-+.. ....-|...+++++..+. ..+.|+||
T Consensus 1 pf~YvS~SPwnl-y~~l~~Fl~~~~~P~G~~~Lr~~---~~~~~~~~~~--~~~~~K~~~i~~i~~~fP---~~kfiLIG 71 (100)
T PF09949_consen 1 PFFYVSNSPWNL-YPFLRDFLRRNGFPAGPLLLRDY---GPSLSGLFKS--GAEEHKRDNIERILRDFP---ERKFILIG 71 (100)
T ss_pred CEEEEcCCHHHH-HHHHHHHHHhcCCCCCceEcccC---CccccccccC--CchhHHHHHHHHHHHHCC---CCcEEEEe
Confidence 34556763 2 45677777777776545555444 1222222211 111479999999998764 36899999
Q ss_pred CCc-cch
Q 020024 253 DSV-GDL 258 (332)
Q Consensus 253 Ds~-~Dl 258 (332)
||- .|.
T Consensus 72 Dsgq~Dp 78 (100)
T PF09949_consen 72 DSGQHDP 78 (100)
T ss_pred eCCCcCH
Confidence 985 453
No 199
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=87.48 E-value=3.3 Score=36.66 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=34.7
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 198 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 198 (332)
...||++.+|++.+.++ ++++|.|++ +..++..++..+++
T Consensus 44 ~~kRP~l~eFL~~~~~~----feIvVwTAa-~~~ya~~~l~~l~~ 83 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYED----YDIVIWSAT-SMKWIEIKMTELGV 83 (195)
T ss_pred EEeCCCHHHHHHHHHhC----CEEEEEecC-CHHHHHHHHHHhcc
Confidence 35799999999999984 899999998 58999999987664
No 200
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=87.03 E-value=1.8 Score=33.95 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccc--cCHHHHHHHHHhcCCC
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYC--WCGDLIRASFSSAGLN 199 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g--~s~~~I~~~l~~~g~~ 199 (332)
..-||+.++++.++++| .+++++|-+ .+..-+...|+.+|++
T Consensus 14 ~~ipga~e~l~~L~~~g---~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 14 EPIPGAVEALDALRERG---KPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp EE-TTHHHHHHHHHHTT---SEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCcCHHHHHHHHHHcC---CCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 45799999999999999 999999975 2223344445677874
No 201
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=86.40 E-value=0.66 Score=42.72 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCe-eEEEc
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 271 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-gvv~~ 271 (332)
+...++..+.+.+.+ ..++++|||+. +|+.+...+++ .+.+.
T Consensus 181 ~p~~~~~~~~~~~~~-~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 181 SKTFFLEALRATGCE-PEEAVMIGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred CHHHHHHHHHHhCCC-hhhEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 345666666666553 47899999996 99999999998 44444
No 202
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=86.19 E-value=0.72 Score=49.80 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=31.7
Q ss_pred CCcchHHHHHHHHHH---hCCCCCceEEEEeCCccchHHhhhcC
Q 020024 225 SPIDKVQAFNNTLEK---YGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~---~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
.+.+|..+++.+++. .+. ..+.++++||+.||..|++.++
T Consensus 759 ~gvnKG~Al~~Ll~~~~~~g~-~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 759 QGVSKGLVAKRLLSIMQERGM-LPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CcccEEEEcCCccHHHHHHHhh
Confidence 466899999988753 233 2468999999999999999875
No 203
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=86.09 E-value=0.42 Score=49.08 Aligned_cols=46 Identities=9% Similarity=0.256 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCee----EEEcCCh
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIG----IVIGSSS 274 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~g----vv~~~~~ 274 (332)
|...|+.++.-+......-...+|.=.||.-.-+.++|+ +.|+++.
T Consensus 634 KIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~~RIFtINpkG 683 (738)
T KOG2116|consen 634 KIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPLSRIFTINPKG 683 (738)
T ss_pred hHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCCccceEEECCCc
Confidence 677777776655422223455688888998888888873 4566554
No 204
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=85.80 E-value=11 Score=35.14 Aligned_cols=86 Identities=21% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccc--cCHHHHHHHHHhcC-CCcceEEeeeeEEcCceecccccccCCCCcchH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYC--WCGDLIRASFSSAG-LNALNVHANEFSFKESISTGEIIEKVESPIDKV 230 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g--~s~~~I~~~l~~~g-~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~ 230 (332)
-..-||+.++|+.++++| .++++||-| -+.+....-|..++ ++. -- +.++| ++
T Consensus 23 ~~~ipga~e~l~~L~~~g---~~~iflTNn~~~s~~~~~~~L~~~~~~~~---~~------~~i~T--------S~---- 78 (269)
T COG0647 23 NEAIPGAAEALKRLKAAG---KPVIFLTNNSTRSREVVAARLSSLGGVDV---TP------DDIVT--------SG---- 78 (269)
T ss_pred CccCchHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHhhcCCCC---CH------HHeec--------HH----
Confidence 356799999999999999 999999965 22333444444422 210 00 11111 11
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI 266 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~ 266 (332)
.+..+++.+... +.+++.+| ..++...+..++.
T Consensus 79 ~at~~~l~~~~~--~~kv~viG-~~~l~~~l~~~G~ 111 (269)
T COG0647 79 DATADYLAKQKP--GKKVYVIG-EEGLKEELEGAGF 111 (269)
T ss_pred HHHHHHHHhhCC--CCEEEEEC-CcchHHHHHhCCc
Confidence 222334433221 25788888 5567777877774
No 205
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=85.47 E-value=0.97 Score=38.01 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=32.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcC
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAG 197 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g 197 (332)
.+.+|||+.+|++++.+. ++++|.|++ +..+++.+++...
T Consensus 34 ~v~~RP~l~~FL~~l~~~----~ev~i~T~~-~~~ya~~v~~~ld 73 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH----YEVVIWTSA-SEEYAEPVLDALD 73 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH----CEEEEE-SS--HHHHHHHHHHHT
T ss_pred eEeeCchHHHHHHHHHHh----ceEEEEEee-hhhhhhHHHHhhh
Confidence 367899999999999765 899999999 5999999998764
No 206
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=84.79 E-value=3.4 Score=36.22 Aligned_cols=103 Identities=14% Similarity=0.187 Sum_probs=63.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchH--
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV-- 230 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~-- 230 (332)
+-+++|.+.+.|++-++.| .+++|-|+| |-. .+..+ +| |..+-++ ++.+.|.|+..+ ..|.
T Consensus 101 kahlypDav~~ik~wk~~g---~~vyiYSSG-SV~-AQkL~--Fg----hs~agdL---~~lfsGyfDtti---G~KrE~ 163 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALG---MRVYIYSSG-SVK-AQKLF--FG----HSDAGDL---NSLFSGYFDTTI---GKKRES 163 (229)
T ss_pred ccccCHhHHHHHHHHHHcC---CcEEEEcCC-Cch-hHHHh--hc----ccccccH---Hhhhcceeeccc---cccccc
Confidence 4689999999999999989 999999988 321 11111 11 1111111 134556665311 1122
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe--eEEEcCC
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI--GIVIGSS 273 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~--gvv~~~~ 273 (332)
.--.++....|.. ...++|+.|-..-|.++..+++ |.+.+++
T Consensus 164 ~SY~kIa~~iGl~-p~eilFLSDn~~EL~AA~~vGl~t~l~~R~g 207 (229)
T COG4229 164 QSYAKIAGDIGLP-PAEILFLSDNPEELKAAAGVGLATGLAVRPG 207 (229)
T ss_pred hhHHHHHHhcCCC-chheEEecCCHHHHHHHHhcchheeeeecCC
Confidence 2223355555553 4689999999999999999987 3444433
No 207
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=84.14 E-value=0.98 Score=48.59 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
+..|...++++.+- +..+=+.|||.||--+|++||+||-....
T Consensus 838 P~qK~~Lie~lQkl-----~y~VgfCGDGANDCgALKaAdvGISLSea 880 (1140)
T KOG0208|consen 838 PDQKAELIEALQKL-----GYKVGFCGDGANDCGALKAADVGISLSEA 880 (1140)
T ss_pred chhHHHHHHHHHhc-----CcEEEecCCCcchhhhhhhcccCcchhhh
Confidence 45677777665531 35788999999999999999999887744
No 208
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=83.69 E-value=2.3 Score=44.13 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEe-eeeE-Ec-Cceecc----ccc----c-c
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHA-NEFS-FK-ESISTG----EII----E-K 222 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~a-N~l~-~~-~g~~tG----~~~----~-~ 222 (332)
+.|..-.+.+++...-| ..+-++++-- -.+-.+.-+++|.. ..+|- ..+. -. |+...| .+. + -
T Consensus 492 pprhdsa~tirral~lG---v~Vkmitgdq-laI~keTgrrlgmg-tnmypss~llG~~~~~~~~~~~v~elie~adgfA 566 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLG---VNVKMITGDQ-LAIAKETGRRLGMG-TNMYPSSALLGLGKDGSMPGSPVDELIEKADGFA 566 (942)
T ss_pred CCccchHHHHHHHHhcc---ceeeeecchH-HHHHHhhhhhhccc-cCcCCchhhccCCCCCCCCCCcHHHHhhhccCcc
Confidence 34667778888877777 8999999752 44555555555532 11221 1111 10 111111 010 0 1
Q ss_pred CCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC
Q 020024 223 VESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS 273 (332)
Q Consensus 223 ~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~ 273 (332)
......|.++++.+..+ ...+-..|||.||-|+|+.||+|+++.+.
T Consensus 567 gVfpehKy~iV~~Lq~r-----~hi~gmtgdgvndapaLKkAdigiava~a 612 (942)
T KOG0205|consen 567 GVFPEHKYEIVKILQER-----KHIVGMTGDGVNDAPALKKADIGIAVADA 612 (942)
T ss_pred ccCHHHHHHHHHHHhhc-----CceecccCCCcccchhhcccccceeeccc
Confidence 34557899999877653 23455899999999999999999999866
No 209
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=82.74 E-value=1.6 Score=37.19 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=36.3
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 198 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 198 (332)
..+.+|||+.+|++.+.+ . ++++|+|++- ..+...+++.++.
T Consensus 55 ~~v~~rPgv~efL~~l~~-~---yel~I~T~~~-~~yA~~vl~~ldp 96 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASK-L---YEMHVYTMGT-RAYAQAIAKLIDP 96 (156)
T ss_pred EEEEECCCHHHHHHHHHh-h---cEEEEEeCCc-HHHHHHHHHHhCc
Confidence 357899999999999984 4 8999999995 9999999988764
No 210
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=81.18 E-value=0.92 Score=41.29 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.2
Q ss_pred CceEEEEeCCCCccc
Q 020024 30 DRLIIFSDFDLTCTI 44 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~ 44 (332)
++.++++||||||+.
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 567899999999995
No 211
>PLN03017 trehalose-phosphatase
Probab=79.84 E-value=7.6 Score=37.80 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=35.3
Q ss_pred CCcchHHHHHHHHHHhCCCC--CceEEEEeCCccchHHhhhc-----CeeEEEc
Q 020024 225 SPIDKVQAFNNTLEKYGTDR--KNLSVYIGDSVGDLLCLLEA-----DIGIVIG 271 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~--~~~viyiGDs~~Dl~~l~~A-----d~gvv~~ 271 (332)
.+.+|-.+++.++...+... ....+|+||-.||-.+++.. ++||.++
T Consensus 280 ~~~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG 333 (366)
T PLN03017 280 IEWDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVS 333 (366)
T ss_pred CCCCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEEC
Confidence 35689999999998655321 23589999999999998865 3566666
No 212
>PRK10444 UMP phosphatase; Provisional
Probab=79.27 E-value=3.7 Score=37.59 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCe-eEEEc
Q 020024 228 DKVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 271 (332)
Q Consensus 228 ~K~~~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-gvv~~ 271 (332)
-+...++..+...+.+ .+++++|||+. +|+.+...+++ .+.+.
T Consensus 175 P~~~~~~~~~~~~~~~-~~~~v~IGD~~~tDi~~A~~~G~~~vlV~ 219 (248)
T PRK10444 175 PSPWIIRAALNKMQAH-SEETVIVGDNLRTDILAGFQAGLETILVL 219 (248)
T ss_pred CCHHHHHHHHHHcCCC-cccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence 3456777777766653 47899999997 99999999998 44444
No 213
>PLN02423 phosphomannomutase
Probab=79.04 E-value=1.4 Score=40.17 Aligned_cols=18 Identities=28% Similarity=0.134 Sum_probs=14.2
Q ss_pred CCceEEEEeCCCCccccc
Q 020024 29 GDRLIIFSDFDLTCTIVD 46 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~D 46 (332)
+.+.+++||+||||...+
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 455677799999999754
No 214
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=78.79 E-value=33 Score=27.80 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=62.2
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDS 254 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs 254 (332)
..+.|+-+|-....+-..|...|+..+.++=.+..-..+.....+......|.-|..++++.+.+.+. .-++..+...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np--~~~v~~~~~~ 80 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP--DVEVEAIPEK 80 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST--TSEEEEEESH
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC--ceeeeeeecc
Confidence 46777766422555555566668754444433322222221111212223477899999999887764 3567777666
Q ss_pred ccch---HHhhhcCeeEEEcCC----hhHHHHhHhcCCeeee
Q 020024 255 VGDL---LCLLEADIGIVIGSS----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 255 ~~Dl---~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p 289 (332)
.++- ..+..+|+-|...++ ..|.++|+++++|++-
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFID 122 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 6322 223467743333333 3678899999998774
No 215
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=77.16 E-value=4.8 Score=37.04 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=44.5
Q ss_pred HHhhhcCeeEEEcCChhHHHHhHhcCCeeeecCchhhhhhhhhhcCCCCCccccCCEEEEeCCHHHHHHhH
Q 020024 259 LCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKEKSGILYTVSSWAEVHAFI 329 (332)
Q Consensus 259 ~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~W~~i~~~l 329 (332)
..+-.|.++++..-+....+.|++.|+||+.|++ +.|...+...|+|++|.|.-+.+
T Consensus 68 ~llIDATHPyAa~iS~Na~~aake~gipy~r~eR--------------P~~~~~gd~~~~V~d~~ea~~~~ 124 (257)
T COG2099 68 DLLIDATHPYAARISQNAARAAKETGIPYLRLER--------------PPWAPNGDNWIEVADIEEAAEAA 124 (257)
T ss_pred CEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC--------------CccccCCCceEEecCHHHHHHHH
Confidence 3444677777777778999999999999999884 55555556899999999987654
No 216
>PLN02580 trehalose-phosphatase
Probab=74.31 E-value=1.9 Score=42.15 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.0
Q ss_pred CCceEEEEeCCCCccc
Q 020024 29 GDRLIIFSDFDLTCTI 44 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~ 44 (332)
.+++++++||||||+.
T Consensus 117 ~k~~~LfLDyDGTLaP 132 (384)
T PLN02580 117 GKKIALFLDYDGTLSP 132 (384)
T ss_pred cCCeEEEEecCCccCC
Confidence 4678999999999995
No 217
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.31 E-value=69 Score=29.17 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=71.3
Q ss_pred CCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccc
Q 020024 142 INLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIE 221 (332)
Q Consensus 142 ~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~ 221 (332)
++.+++..+.+++.++.--.+--+.+++ ..+.||-+|--...+...|...|+..+.++=.+..-..+.-.-.+..
T Consensus 5 l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~-----~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~ 79 (245)
T PRK05690 5 LSDEEMLRYNRQIILRGFDFDGQEKLKA-----ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHD 79 (245)
T ss_pred CCHHHHHHHHHhccchhcCHHHHHHhcC-----CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCC
Confidence 4555555555555443211222233332 57777765422555556666668755444433322111110000111
Q ss_pred cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccc---hHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeee
Q 020024 222 KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGD---LLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 222 ~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~D---l~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p 289 (332)
.-.-|..|...+.+.+.+.+. .-++..+-...+. ...+..+|+-|...++ ..+.++|.++++|++-
T Consensus 80 ~~dvG~~Ka~~a~~~l~~lnp--~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 80 DATIGQPKVESARAALARINP--HIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred hhhCCChHHHHHHHHHHHHCC--CCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEE
Confidence 123356799888887776654 2355555444333 2345667842222222 2477889999998874
No 218
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=73.65 E-value=2.1 Score=39.84 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC
Q 020024 227 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 227 ~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
..|..+++.+....... +..+++.||-.||=.++..+.
T Consensus 181 ~~KG~a~~~i~~~~~~~-~~~~~~aGDD~TDE~~F~~v~ 218 (266)
T COG1877 181 VSKGAAIKYIMDELPFD-GRFPIFAGDDLTDEDAFAAVN 218 (266)
T ss_pred cchHHHHHHHHhcCCCC-CCcceecCCCCccHHHHHhhc
Confidence 34999998877665432 246899999999999999876
No 219
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=73.53 E-value=2.2 Score=39.44 Aligned_cols=15 Identities=27% Similarity=0.169 Sum_probs=13.2
Q ss_pred CceEEEEeCCCCccc
Q 020024 30 DRLIIFSDFDLTCTI 44 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~ 44 (332)
.+.++++||||||+.
T Consensus 13 ~~~li~~D~DGTLl~ 27 (266)
T PRK10187 13 ANYAWFFDLDGTLAE 27 (266)
T ss_pred CCEEEEEecCCCCCC
Confidence 457999999999996
No 220
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=73.31 E-value=2.2 Score=35.05 Aligned_cols=47 Identities=4% Similarity=-0.140 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHcCCCCCcEEEEccccCH--------------HHHHHHHHhcCCCcceEEee
Q 020024 157 QDGCTTFFQKVVKNENLNANVHVLSYCWCG--------------DLIRASFSSAGLNALNVHAN 206 (332)
Q Consensus 157 rpg~~e~l~~l~~~g~~~~~~~IvS~g~s~--------------~~I~~~l~~~g~~~~~I~aN 206 (332)
.+++.+.++.++++| +.++++|+--.. ..+..+|.+++++-.+|+-.
T Consensus 26 ~~~~ie~L~~l~~~G---~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 26 ILAVIEKLRHYKALG---FEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred CHHHHHHHHHHHHCC---CEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeC
Confidence 334455677777778 899999974211 26677777777765555543
No 221
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=73.26 E-value=71 Score=31.29 Aligned_cols=141 Identities=10% Similarity=0.054 Sum_probs=72.5
Q ss_pred CCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccc
Q 020024 142 INLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIE 221 (332)
Q Consensus 142 ~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~ 221 (332)
++.+++..+.+++.+..=-.+--+++++ ..+.||=+|--+..+-..|...|+..+.++=++..-..+.-.--+..
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~-----~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~ 89 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKN-----ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHG 89 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhc-----CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccC
Confidence 4555555444443332111344445553 56777765422556666666678765544433322211111111112
Q ss_pred cCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCcc---chHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeee
Q 020024 222 KVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVG---DLLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 222 ~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~---Dl~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p 289 (332)
....|..|...+.+.+.+.+. .-++..+-...+ +...+..+|+-|...++ -.+-++|.++++|++-
T Consensus 90 ~~diG~~Ka~~a~~~l~~~np--~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~ 162 (392)
T PRK07878 90 QSDVGRSKAQSARDSIVEINP--LVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVW 162 (392)
T ss_pred hhcCCChHHHHHHHHHHHhCC--CcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 223456799888888777664 235545543333 34566778842222222 2466889999988773
No 222
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=73.26 E-value=1.9 Score=37.51 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=14.4
Q ss_pred CCceEEEEeCCCCcccc
Q 020024 29 GDRLIIFSDFDLTCTIV 45 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~ 45 (332)
+...++++|+|||||..
T Consensus 19 ~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 19 ENIRLLICDVDGVFSDG 35 (183)
T ss_pred hCceEEEEcCCeeeecC
Confidence 35679999999999974
No 223
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=72.72 E-value=5.5 Score=35.99 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhCCCCCceE-EEEeCCc-cchHHhhhcCee
Q 020024 229 KVQAFNNTLEKYGTDRKNLS-VYIGDSV-GDLLCLLEADIG 267 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~v-iyiGDs~-~Dl~~l~~Ad~g 267 (332)
+...++..+++.+... .++ ++|||+. +|+.+...+++.
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~IGD~~~~Di~~A~~~G~~ 229 (236)
T TIGR01460 190 SPAIYRAALNLLQARP-ERRDVMVGDNLRTDILGAKNAGFD 229 (236)
T ss_pred CHHHHHHHHHHhCCCC-ccceEEECCCcHHHHHHHHHCCCc
Confidence 4566776676666433 454 9999998 899999999874
No 224
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=72.70 E-value=6.7 Score=35.78 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCe-eEEEc
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVIG 271 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-gvv~~ 271 (332)
+...++..+...+.+ ..++++|||+. +|+.+...+++ .+.+.
T Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~VGD~~~~Di~~a~~~G~~~v~v~ 223 (249)
T TIGR01457 180 NAIIMEKAVEHLGTE-REETLMVGDNYLTDIRAGIDAGIDTLLVH 223 (249)
T ss_pred hHHHHHHHHHHcCCC-cccEEEECCCchhhHHHHHHcCCcEEEEc
Confidence 456777777776653 47899999996 99999999998 34444
No 225
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=71.96 E-value=43 Score=30.19 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=35.2
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeee
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEF 208 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l 208 (332)
+.+...+.|++++++| +.++|.|+.- ...+...++.++++...|.+|-.
T Consensus 17 i~~~~~~~i~~l~~~G---~~~~iaTGR~-~~~~~~~~~~~~~~~~~I~~NGa 65 (256)
T TIGR00099 17 ISPSTKEALAKLREKG---IKVVLATGRP-YKEVKNILKELGLDTPFITANGA 65 (256)
T ss_pred cCHHHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCCCCEEEcCCc
Confidence 3455667889999999 9999999874 77788888887764323444443
No 226
>PLN02151 trehalose-phosphatase
Probab=71.90 E-value=2.4 Score=40.98 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=34.2
Q ss_pred CCcchHHHHHHHHHHhCCCC--CceEEEEeCCccchHHhhhc-----CeeEEEc
Q 020024 225 SPIDKVQAFNNTLEKYGTDR--KNLSVYIGDSVGDLLCLLEA-----DIGIVIG 271 (332)
Q Consensus 225 ~~~~K~~~l~~~~~~~~~~~--~~~viyiGDs~~Dl~~l~~A-----d~gvv~~ 271 (332)
.+.+|-.+++.++...+... ..-++|+||-.||-.++... |+||.++
T Consensus 266 ~~~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg 319 (354)
T PLN02151 266 IKWDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVS 319 (354)
T ss_pred CCCCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEec
Confidence 36689999999997654321 12489999999999998864 4455554
No 227
>PLN02645 phosphoglycolate phosphatase
Probab=71.32 E-value=5.7 Score=37.59 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCc-cchHHhhhcCe-eEEE
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSV-GDLLCLLEADI-GIVI 270 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~-~Dl~~l~~Ad~-gvv~ 270 (332)
+...++..+...+.+ ..+++||||+. +|+.+...+++ .+.+
T Consensus 232 ~p~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 232 STFMMDYLANKFGIE-KSQICMVGDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred hHHHHHHHHHHcCCC-cccEEEEcCCcHHHHHHHHHcCCCEEEE
Confidence 345666666666653 47899999997 99999999997 3444
No 228
>PLN03017 trehalose-phosphatase
Probab=71.27 E-value=2.6 Score=40.99 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=14.0
Q ss_pred CCceEEEEeCCCCccc
Q 020024 29 GDRLIIFSDFDLTCTI 44 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~ 44 (332)
.+++++++||||||+.
T Consensus 109 ~k~~llflD~DGTL~P 124 (366)
T PLN03017 109 GKQIVMFLDYDGTLSP 124 (366)
T ss_pred CCCeEEEEecCCcCcC
Confidence 5678999999999993
No 229
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=70.41 E-value=74 Score=30.89 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=58.8
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeC-
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD- 253 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD- 253 (332)
.+++|+-+|-....+...|...|+..+.++=.+..-..+...-.+......|..|...+.+.+.+.+.. -++..+-.
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~--v~v~~~~~~ 213 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD--VQVEAVQER 213 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC--CEEEEEecc
Confidence 577777665336677777777787554444333211111100001111223567998888777665531 23333322
Q ss_pred --CccchHHhhhcCeeEEEcC-C-----hhHHHHhHhcCCeeee
Q 020024 254 --SVGDLLCLLEADIGIVIGS-S-----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 254 --s~~Dl~~l~~Ad~gvv~~~-~-----~~L~~~~~~~~~~~~p 289 (332)
+.+....+..+| +|+.. + ..+-++|.++++|++-
T Consensus 214 ~~~~~~~~~~~~~D--~Vv~~~d~~~~r~~ln~~~~~~~ip~i~ 255 (376)
T PRK08762 214 VTSDNVEALLQDVD--VVVDGADNFPTRYLLNDACVKLGKPLVY 255 (376)
T ss_pred CChHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 222233456688 44432 2 2467889999998874
No 230
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=70.09 E-value=55 Score=28.22 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEcccc------CHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcc
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCW------CGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPID 228 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~------s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~ 228 (332)
.+.|...+.++.+++.+. ...++|||-+. ...-++.+-+.+|++ ++.-. ..++ .|
T Consensus 59 ~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp---vl~h~------------~kKP---~~ 119 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSDDPDGERAEALEKALGIP---VLRHR------------AKKP---GC 119 (168)
T ss_pred cCCHHHHHHHHHHHHHCC-CCeEEEEECCCCcccCccHHHHHHHHHhhCCc---EEEeC------------CCCC---cc
Confidence 456667778888998761 01599999752 133344444555642 22200 1111 23
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCC-ccchHHhhhcC-eeEEEcC
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEAD-IGIVIGS 272 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad-~gvv~~~ 272 (332)
...+++.+.........++++.|||= .||+.+....+ .+|.+..
T Consensus 120 ~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~ 165 (168)
T PF09419_consen 120 FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTD 165 (168)
T ss_pred HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEec
Confidence 44444433222111134789999997 48999888888 4666654
No 231
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=69.71 E-value=2.7 Score=34.20 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.9
Q ss_pred EEEEeCCCCcccccc
Q 020024 33 IIFSDFDLTCTIVDS 47 (332)
Q Consensus 33 lvi~DFD~TiT~~Dt 47 (332)
++++|+|+||+..+.
T Consensus 2 li~~DlD~Tl~~~~~ 16 (128)
T TIGR01681 2 VIVFDLDNTLWTGEN 16 (128)
T ss_pred EEEEeCCCCCCCCCc
Confidence 789999999997653
No 232
>PTZ00174 phosphomannomutase; Provisional
Probab=68.60 E-value=3.3 Score=37.66 Aligned_cols=16 Identities=31% Similarity=0.247 Sum_probs=13.9
Q ss_pred ceEEEEeCCCCccccc
Q 020024 31 RLIIFSDFDLTCTIVD 46 (332)
Q Consensus 31 ~~lvi~DFD~TiT~~D 46 (332)
..++++|+||||...|
T Consensus 5 ~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR 20 (247)
T ss_pred CeEEEEECcCCCcCCC
Confidence 4699999999999765
No 233
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=68.32 E-value=3.2 Score=37.96 Aligned_cols=14 Identities=29% Similarity=0.145 Sum_probs=12.6
Q ss_pred ceEEEEeCCCCccc
Q 020024 31 RLIIFSDFDLTCTI 44 (332)
Q Consensus 31 ~~lvi~DFD~TiT~ 44 (332)
+.++++|||+|++.
T Consensus 2 ~~ll~sDlD~Tl~~ 15 (247)
T PF05116_consen 2 PRLLASDLDGTLID 15 (247)
T ss_dssp SEEEEEETBTTTBH
T ss_pred CEEEEEECCCCCcC
Confidence 57999999999993
No 234
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=67.83 E-value=6.5 Score=36.43 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCC-ccchHHhhhcCee
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDS-VGDLLCLLEADIG 267 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs-~~Dl~~l~~Ad~g 267 (332)
..+...+...+.. ..++++|||+ .+|+.+...|++.
T Consensus 206 ~~~~~~~~~~~~~-~~~~lmIGD~~~tDI~~A~~aGi~ 242 (279)
T TIGR01452 206 YMFECITENFSID-PARTLMVGDRLETDILFGHRCGMT 242 (279)
T ss_pred HHHHHHHHHhCCC-hhhEEEECCChHHHHHHHHHcCCc
Confidence 4555566665553 4789999999 5999999999983
No 235
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=66.11 E-value=18 Score=40.03 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceE-EEEeCCcc-chHHhhh-
Q 020024 187 DLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLS-VYIGDSVG-DLLCLLE- 263 (332)
Q Consensus 187 ~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~v-iyiGDs~~-Dl~~l~~- 263 (332)
.-|+..|+..|+.-.-|+|. + |.+..-++-...|..+|+-+..+++.+. .++ +++|||-| |+..|+.
T Consensus 924 ~elr~~Lr~~gLr~~~iys~-----~----~~~LDVlP~~ASKgqAlRyL~~rwgi~l-~~v~VfaGdSGntD~e~Ll~G 993 (1050)
T TIGR02468 924 KELRKLLRIQGLRCHAVYCR-----N----GTRLNVIPLLASRSQALRYLFVRWGIEL-ANMAVFVGESGDTDYEGLLGG 993 (1050)
T ss_pred HHHHHHHHhCCCceEEEeec-----C----CcEeeeeeCCCCHHHHHHHHHHHcCCCh-HHeEEEeccCCCCCHHHHhCC
Confidence 45556666666632122331 1 1222334455679999999888888854 455 77999999 9887653
Q ss_pred cCeeEEEcC
Q 020024 264 ADIGIVIGS 272 (332)
Q Consensus 264 Ad~gvv~~~ 272 (332)
...+|++..
T Consensus 994 ~~~tvi~~g 1002 (1050)
T TIGR02468 994 LHKTVILKG 1002 (1050)
T ss_pred ceeEEEEec
Confidence 334777765
No 236
>PLN02151 trehalose-phosphatase
Probab=66.10 E-value=7.4 Score=37.72 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=14.5
Q ss_pred cCCEEEEeCCHHHHHHhHh
Q 020024 312 KSGILYTVSSWAEVHAFIL 330 (332)
Q Consensus 312 ~~~~ly~~~~W~~i~~~l~ 330 (332)
++..=|++.+-.++..||.
T Consensus 324 ~T~A~y~L~dp~eV~~~L~ 342 (354)
T PLN02151 324 ETNASYSLQEPDEVMEFLE 342 (354)
T ss_pred CCcceEeCCCHHHHHHHHH
Confidence 4456688899999988873
No 237
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=65.61 E-value=20 Score=29.41 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=11.3
Q ss_pred eEEEEeCCCCccc
Q 020024 32 LIIFSDFDLTCTI 44 (332)
Q Consensus 32 ~lvi~DFD~TiT~ 44 (332)
.++++|.||||+.
T Consensus 2 K~i~~DiDGTL~~ 14 (126)
T TIGR01689 2 KRLVMDLDNTITL 14 (126)
T ss_pred CEEEEeCCCCccc
Confidence 3899999999984
No 238
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=65.07 E-value=5.7 Score=34.99 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=34.8
Q ss_pred EeCCccchHHhhhcCe--eEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 251 IGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 251 iGDs~~Dl~~l~~Ad~--gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
+=||.-|+..|+.|-- |.++.++.-++++|++.|+.|++-..
T Consensus 158 iLDSapDlDvLLLAkELdaavVssD~Gir~WAe~LGlrfv~a~~ 201 (221)
T COG1458 158 ILDSAPDLDVLLLAKELDAAVVSSDEGIRTWAEKLGLRFVDAFK 201 (221)
T ss_pred cccccchhHHHHHHHHhCceEEecchhHHHHHHHhCCeeeCHhh
Confidence 5699999999888743 66777788899999999999997553
No 239
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=64.95 E-value=2.9 Score=37.52 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.7
Q ss_pred EEEEeCCCCccccc
Q 020024 33 IIFSDFDLTCTIVD 46 (332)
Q Consensus 33 lvi~DFD~TiT~~D 46 (332)
++++|+||||+..|
T Consensus 1 li~~DlDgTLl~~~ 14 (236)
T TIGR02471 1 LIITDLDNTLLGDD 14 (236)
T ss_pred CeEEeccccccCCH
Confidence 57899999999744
No 240
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=64.05 E-value=3.7 Score=35.40 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=13.8
Q ss_pred CceEEEEeCCCCcccc
Q 020024 30 DRLIIFSDFDLTCTIV 45 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~ 45 (332)
.-.++|||+||++|+.
T Consensus 6 ~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 6 NIKLVILDVDGVMTDG 21 (169)
T ss_pred cCeEEEEeCceeeECC
Confidence 3469999999999985
No 241
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=63.06 E-value=28 Score=28.73 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=38.6
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 198 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 198 (332)
..+.+++..+..|..|+++| +.+++.|-+|..++....|+.+.+
T Consensus 41 ~e~~fY~Di~rIL~dLk~~G---Vtl~~ASRt~ap~iA~q~L~~fkv 84 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLG---VTLIHASRTMAPQIASQGLETFKV 84 (144)
T ss_pred ceeeeccchhHHHHHHHhcC---cEEEEecCCCCHHHHHHHHHHhcc
Confidence 34678888889999999999 999999999999999999987654
No 242
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=62.80 E-value=1.5e+02 Score=28.88 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=76.1
Q ss_pred cCCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceeccc
Q 020024 139 LKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGE 218 (332)
Q Consensus 139 f~G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~ 218 (332)
|--++..++..+.+++.+..=-.+--+++++ ..+.|+-+|-....+-..|...|+..+.++=.+..-..+. .-+
T Consensus 11 ~~~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~-----~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL-~RQ 84 (370)
T PRK05600 11 FMQLPTSELRRTARQLALPGFGIEQQERLHN-----ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNI-HRQ 84 (370)
T ss_pred CCCCCHHHHHHhhcccchhhhCHHHHHHhcC-----CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccc-ccc
Confidence 3346666666666666553322444444443 5677776653366666666677875444443332211111 111
Q ss_pred c-cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCcc---chHHhhhcCeeEEEcCC-----hhHHHHhHhcCCeeee
Q 020024 219 I-IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVG---DLLCLLEADIGIVIGSS-----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 219 ~-~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~---Dl~~l~~Ad~gvv~~~~-----~~L~~~~~~~~~~~~p 289 (332)
+ ......|..|...+.+.+.+.+. .-++..+-...+ ....+..+|+ |+-+.+ -.+-++|.++++|++-
T Consensus 85 ~l~~~~diG~~Ka~~~~~~l~~~np--~v~i~~~~~~i~~~~~~~~~~~~Dl-Vid~~Dn~~~r~~in~~~~~~~iP~v~ 161 (370)
T PRK05600 85 ILFGASDVGRPKVEVAAERLKEIQP--DIRVNALRERLTAENAVELLNGVDL-VLDGSDSFATKFLVADAAEITGTPLVW 161 (370)
T ss_pred ccCChhHCCCHHHHHHHHHHHHHCC--CCeeEEeeeecCHHHHHHHHhCCCE-EEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 1 11223356799888888877654 234444443333 2345667884 222322 2456789999988773
No 243
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=62.06 E-value=7 Score=35.15 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=27.1
Q ss_pred CcchHHHHHHHHHHhCCC--CCceEEEEeCCccchHHhhhcC
Q 020024 226 PIDKVQAFNNTLEKYGTD--RKNLSVYIGDSVGDLLCLLEAD 265 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~--~~~~viyiGDs~~Dl~~l~~Ad 265 (332)
+..|..+++.+++..+.. ....++|+||..||-.|+..+.
T Consensus 163 ~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~ 204 (235)
T PF02358_consen 163 GVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALR 204 (235)
T ss_dssp T--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHH
Confidence 345999999998765421 1247999999999999998853
No 244
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=61.32 E-value=88 Score=25.45 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCc---cchHHhh
Q 020024 186 GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSV---GDLLCLL 262 (332)
Q Consensus 186 ~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~---~Dl~~l~ 262 (332)
...+-..|...|+..+.++=++..-..+...-.+......|..|...+.+.+.+.+. .-++-.+-... ++...+.
T Consensus 11 Gs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p--~v~i~~~~~~~~~~~~~~~~~ 88 (143)
T cd01483 11 GSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP--GVNVTAVPEGISEDNLDDFLD 88 (143)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC--CcEEEEEeeecChhhHHHHhc
Confidence 344444455557644444443332211111111111223366799999888877653 23333333332 3345666
Q ss_pred hcCeeEEEcCC----hhHHHHhHhcCCeeee
Q 020024 263 EADIGIVIGSS----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 263 ~Ad~gvv~~~~----~~L~~~~~~~~~~~~p 289 (332)
..|+-|...++ ..|.++|+++++|++-
T Consensus 89 ~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 89 GVDLVIDAIDNIAVRRALNRACKELGIPVID 119 (143)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 77843222222 3578899999988874
No 245
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=61.27 E-value=5.7 Score=33.99 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=15.3
Q ss_pred CCCCceEEEEeCCCCccccc
Q 020024 27 PAGDRLIIFSDFDLTCTIVD 46 (332)
Q Consensus 27 ~~~~~~lvi~DFD~TiT~~D 46 (332)
|+....+++||.||||+..+
T Consensus 9 ~~~~~k~~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 9 PKPQSKVAAFDLDGTLITTR 28 (166)
T ss_pred CCCcCcEEEEeCCCceEecC
Confidence 44446789999999999754
No 246
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=60.78 E-value=19 Score=32.84 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHcCCCCCcEEEEcc--ccCHHHHHHHHHhcCCC
Q 020024 158 DGCTTFFQKVVKNENLNANVHVLSY--CWCGDLIRASFSSAGLN 199 (332)
Q Consensus 158 pg~~e~l~~l~~~g~~~~~~~IvS~--g~s~~~I~~~l~~~g~~ 199 (332)
||+.++++.++++| .+++++|. +.+..-+...++..|++
T Consensus 20 ~~a~~~l~~l~~~g---~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 20 PEAETFVHELQKRD---IPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred cCHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 57789999999999 99999996 34566677777777764
No 247
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=60.69 E-value=4.7 Score=32.50 Aligned_cols=12 Identities=33% Similarity=0.094 Sum_probs=11.0
Q ss_pred EEEEeCCCCccc
Q 020024 33 IIFSDFDLTCTI 44 (332)
Q Consensus 33 lvi~DFD~TiT~ 44 (332)
+++||+||||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 789999999994
No 248
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=59.74 E-value=25 Score=31.50 Aligned_cols=48 Identities=6% Similarity=-0.099 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeE
Q 020024 158 DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS 209 (332)
Q Consensus 158 pg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~ 209 (332)
++..+.|+.++++| +++++.|+. +..-+...++.+|+....|.+|-..
T Consensus 18 ~~~~~ai~~l~~~G---~~~vi~TgR-~~~~~~~~~~~lg~~~~~I~~NGa~ 65 (225)
T TIGR02461 18 GPAREALEELKDLG---FPIVFVSSK-TRAEQEYYREELGVEPPFIVENGGA 65 (225)
T ss_pred hHHHHHHHHHHHCC---CEEEEEeCC-CHHHHHHHHHHcCCCCcEEEcCCcE
Confidence 45678899999999 999999986 4666777888888643344455433
No 249
>PRK06153 hypothetical protein; Provisional
Probab=56.71 E-value=1.4e+02 Score=29.51 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=74.6
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeE-EcC-ceeccccc-ccCCCCcc
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS-FKE-SISTGEII-EKVESPID 228 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~-~~~-g~~tG~~~-~~~~~~~~ 228 (332)
+..--|-|..++-++++. ..+.||=.|-.+.+|-..|.+.|+..+.++=.+.. ..| .+..|-+. ..+....-
T Consensus 159 dt~s~R~~i~~~q~kL~~-----~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~ 233 (393)
T PRK06153 159 DTASSRAGIGALSAKLEG-----QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPK 233 (393)
T ss_pred hhhccccChHHHHHHHhh-----CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcch
Confidence 345567677777777775 47778876656889999998888754433322211 111 12222222 11222236
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeeecC
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIPLY 291 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p~~ 291 (332)
|+.++++.+.+.+..-.....++ |..| +..+..+|+-+...++ ..|-++|.++++|++-.-
T Consensus 234 KVevaa~rl~~in~~I~~~~~~I-~~~n-~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G 298 (393)
T PRK06153 234 KVDYFKSRYSNMRRGIVPHPEYI-DEDN-VDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVG 298 (393)
T ss_pred HHHHHHHHHHHhCCeEEEEeecC-CHHH-HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 99998887766543100111234 3222 3456678853333333 357788999999887543
No 250
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.00 E-value=85 Score=24.00 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhCCCCCceEEE---EeCCccc--hH-HhhhcCeeEEEcCC------hhHHHHhHhcCCeeeecC
Q 020024 228 DKVQAFNNTLEKYGTDRKNLSVY---IGDSVGD--LL-CLLEADIGIVIGSS------SSLRRVGSQFGVTFIPLY 291 (332)
Q Consensus 228 ~K~~~l~~~~~~~~~~~~~~viy---iGDs~~D--l~-~l~~Ad~gvv~~~~------~~L~~~~~~~~~~~~p~~ 291 (332)
+....++++++++|. ..+++ -|+.... ++ .+..||+-|++-+- ..+++.|+++++|++...
T Consensus 10 ~~~~~~~~~~~~~G~---~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 10 DRERRYKRILEKYGG---KLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred ccHHHHHHHHHHcCC---EEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 456677778887764 33444 3666666 55 44567865544432 478999999999999766
No 251
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=55.65 E-value=6.8 Score=33.49 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=13.6
Q ss_pred CceEEEEeCCCCcccc
Q 020024 30 DRLIIFSDFDLTCTIV 45 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~ 45 (332)
+=.++|+|.|||||+.
T Consensus 7 ~IkLli~DVDGvLTDG 22 (170)
T COG1778 7 NIKLLILDVDGVLTDG 22 (170)
T ss_pred hceEEEEeccceeecC
Confidence 3369999999999985
No 252
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=54.79 E-value=6.4 Score=33.10 Aligned_cols=14 Identities=21% Similarity=0.033 Sum_probs=12.1
Q ss_pred eEEEEeCCCCcccc
Q 020024 32 LIIFSDFDLTCTIV 45 (332)
Q Consensus 32 ~lvi~DFD~TiT~~ 45 (332)
.+++||.||||++.
T Consensus 2 ~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 2 RLLILDVDGVLTDG 15 (154)
T ss_pred eEEEEeCceeEEcC
Confidence 47999999999963
No 253
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=53.63 E-value=1e+02 Score=26.72 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeE
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS 209 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~ 209 (332)
+.|...+.|+.++++| +.++|.|+-. ...+...+...++..--|.+|-..
T Consensus 16 i~~~~~~al~~l~~~g---~~~~i~TGR~-~~~~~~~~~~~~~~~~~I~~nGa~ 65 (254)
T PF08282_consen 16 ISPETIEALKELQEKG---IKLVIATGRS-YSSIKRLLKELGIDDYFICSNGAL 65 (254)
T ss_dssp SCHHHHHHHHHHHHTT---CEEEEECSST-HHHHHHHHHHTTHCSEEEEGGGTE
T ss_pred eCHHHHHHHHhhcccc---eEEEEEccCc-ccccccccccccchhhhcccccce
Confidence 4455667788899999 9999999874 778888888877652234444433
No 254
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=53.55 E-value=28 Score=31.82 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=31.3
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccC--HHHHHHHHHhcCCC
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWC--GDLIRASFSSAGLN 199 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s--~~~I~~~l~~~g~~ 199 (332)
+-||+.++++.++++| .+++++|.+-+ ..-+...|+.+|++
T Consensus 22 ~~~~a~~al~~l~~~G---~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 22 AVPGSQEAVKRLRGAS---VKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred cCCCHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 5679999999999999 99999997532 23455666777763
No 255
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=53.11 E-value=1.9e+02 Score=26.85 Aligned_cols=112 Identities=8% Similarity=0.125 Sum_probs=62.3
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceeccccc-ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEII-EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 253 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~-~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD 253 (332)
..++|+-+|--...+...|...|+..+.|+=.+..-..+. .-++. .....|..|..++.+.+...+. .-++..+=+
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl-nRQ~~~~~~~vG~~Kve~~~~rl~~INP--~~~V~~i~~ 107 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT-NRQIHALRDNVGLAKAEVMAERIRQINP--ECRVTVVDD 107 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc-ccccccChhhcChHHHHHHHHHHHhHCC--CcEEEEEec
Confidence 5677777654477777888777875554443332211111 11111 1123456799999888876654 245555533
Q ss_pred Ccc--chHHhh--hcCeeEEEcCC-----hhHHHHhHhcCCeeeec
Q 020024 254 SVG--DLLCLL--EADIGIVIGSS-----SSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 254 s~~--Dl~~l~--~Ad~gvv~~~~-----~~L~~~~~~~~~~~~p~ 290 (332)
..+ .+..+. ..|+ |+.+-+ ..|.++|.++++|++--
T Consensus 108 ~i~~e~~~~ll~~~~D~-VIdaiD~~~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 108 FITPDNVAEYMSAGFSY-VIDAIDSVRPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred ccChhhHHHHhcCCCCE-EEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 322 222222 3673 222322 25889999999998844
No 256
>PRK10444 UMP phosphatase; Provisional
Probab=52.95 E-value=29 Score=31.74 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=29.7
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEccccC--HHHHHHHHHhcCC
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSYCWC--GDLIRASFSSAGL 198 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s--~~~I~~~l~~~g~ 198 (332)
.+-||+.++++.++++| .+++++|.+-+ ..-+..-|+.+|+
T Consensus 17 ~~~p~a~~~l~~L~~~g---~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 17 VAVPGAAEFLHRILDKG---LPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred eeCccHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 34689999999999999 99999998732 2223334455676
No 257
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.04 E-value=1.6e+02 Score=26.64 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=60.9
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDS 254 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs 254 (332)
..+.|+=+|--...+-..|...|+..+.++=.+..-..+...-.+.....-|..|...+.+.+.+.+. .-++-.+-..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp--~v~i~~~~~~ 102 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINP--HIAINPINAK 102 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCC--CcEEEEEecc
Confidence 56777765423666667777778765444332222111111101111123356799888888877664 2344455433
Q ss_pred c---cchHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeee
Q 020024 255 V---GDLLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 255 ~---~Dl~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p 289 (332)
. +....+..+|+-|...++ ..|-++|.++++|++-
T Consensus 103 i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 103 LDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred CCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3 333456678842222223 2577889999998884
No 258
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=51.91 E-value=8.3 Score=40.99 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.3
Q ss_pred CCceEEEEeCCCCcccc
Q 020024 29 GDRLIIFSDFDLTCTIV 45 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~ 45 (332)
.++.++++|+||||+..
T Consensus 490 ~~~rLi~~D~DGTL~~~ 506 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPF 506 (726)
T ss_pred ccceEEEEecCccccCC
Confidence 35679999999999963
No 259
>PLN02382 probable sucrose-phosphatase
Probab=51.31 E-value=10 Score=37.54 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.8
Q ss_pred CCceEEEEeCCCCcccc
Q 020024 29 GDRLIIFSDFDLTCTIV 45 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~~ 45 (332)
..+++|++|+||||...
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 35889999999999976
No 260
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=50.97 E-value=41 Score=30.43 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeE
Q 020024 160 CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFS 209 (332)
Q Consensus 160 ~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~ 209 (332)
..+.++.++++| ++++|+|+- +..-+...++.+|++..-|-+|-..
T Consensus 21 ~~~~i~~l~~~g---~~~~~~TgR-~~~~~~~~~~~~~~~~~~I~~NGa~ 66 (256)
T TIGR01486 21 AKEVLERLQELG---IPVIPCTSK-TAAEVEYLRKELGLEDPFIVENGGA 66 (256)
T ss_pred HHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCCCCcEEEcCCeE
Confidence 467888999999 999999976 4777888888888753344455543
No 261
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=50.60 E-value=2.4e+02 Score=27.19 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=61.9
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccc-cccCCCCcchHHHHHHHHHHhCCCCCceEEEEeC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEI-IEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 253 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~-~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD 253 (332)
..+.|+=+|--...+...|...|+..+.++=.+..-..+. .-.+ ...-..|..|...+.+.+.+.+.. -++..+-.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL-~Rq~l~~~~diG~~Ka~~a~~~l~~~np~--v~v~~~~~ 105 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL-HRQVIHSTAGVGQPKAESAREAMLALNPD--VKVTVSVR 105 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc-ccCcccChhHCCChHHHHHHHHHHHHCCC--cEEEEEEe
Confidence 5677776542256666667777876555554433221111 1111 112233567998888888776642 34444433
Q ss_pred C---ccchHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeee
Q 020024 254 S---VGDLLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 254 s---~~Dl~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p 289 (332)
. .+....+..+|+-|...++ ..+.+.|.++++|++-
T Consensus 106 ~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 106 RLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVW 148 (355)
T ss_pred ecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3 3345667788842222222 2467889999998874
No 262
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=49.89 E-value=59 Score=31.21 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=54.8
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccc-cC-HHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccC-CCCcchH
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYC-WC-GDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKV-ESPIDKV 230 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g-~s-~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~-~~~~~K~ 230 (332)
-..-||+..+++.+.+.|. .++.-||.+ |. -..+.+++...+++.-.++=-+ + ++. ++... ..+..|.
T Consensus 195 r~~ipGV~~~yr~l~~~~~--apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~--~-g~~----~~~i~~sga~rK~ 265 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGD--APVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRR--W-GGV----LDNIIESGAARKG 265 (373)
T ss_pred cCCCCCHHHHHHHHHhcCC--CCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhh--c-CCc----ccccccchhhhcc
Confidence 3677899999999987652 688888864 20 1334444444444322111100 1 222 22222 2344677
Q ss_pred HHHHHHHHHhCCCCCceEEEEeCC-ccchHH
Q 020024 231 QAFNNTLEKYGTDRKNLSVYIGDS-VGDLLC 260 (332)
Q Consensus 231 ~~l~~~~~~~~~~~~~~viyiGDs-~~Dl~~ 260 (332)
..++.++.++. ..+.|.|||| .-|++.
T Consensus 266 ~~l~nil~~~p---~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 266 QSLRNILRRYP---DRKFVLVGDSGEHDPEI 293 (373)
T ss_pred cHHHHHHHhCC---CceEEEecCCCCcCHHH
Confidence 78887777764 3689999996 557654
No 263
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=49.63 E-value=1.9e+02 Score=26.12 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHcCCCCCcE-EEEccccCHHHHHHHHH-hcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHH
Q 020024 158 DGCTTFFQKVVKNENLNANV-HVLSYCWCGDLIRASFS-SAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNN 235 (332)
Q Consensus 158 pg~~e~l~~l~~~g~~~~~~-~IvS~g~s~~~I~~~l~-~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~ 235 (332)
+...++++.++++| ... .+++-+-+.+.|+.+++ ..|+ +.+++- .|. ||.-.+......+|.+.+++
T Consensus 116 ee~~~~~~~~~~~g---~~~i~~i~P~T~~~~i~~i~~~~~~~--vy~~s~-----~g~-tG~~~~~~~~~~~~i~~lr~ 184 (242)
T cd04724 116 EEAEEFREAAKEYG---LDLIFLVAPTTPDERIKKIAELASGF--IYYVSR-----TGV-TGARTELPDDLKELIKRIRK 184 (242)
T ss_pred HHHHHHHHHHHHcC---CcEEEEeCCCCCHHHHHHHHhhCCCC--EEEEeC-----CCC-CCCccCCChhHHHHHHHHHh
Confidence 35678888889888 644 44777655677777776 3333 333332 121 22111111222345555554
Q ss_pred HHHHhCCCCCceEEEEeCCcc---chHHhhh-cCeeEEEcCChhHHHHhHhc
Q 020024 236 TLEKYGTDRKNLSVYIGDSVG---DLLCLLE-ADIGIVIGSSSSLRRVGSQF 283 (332)
Q Consensus 236 ~~~~~~~~~~~~viyiGDs~~---Dl~~l~~-Ad~gvv~~~~~~L~~~~~~~ 283 (332)
+. +.-+.+|=|.+ ++..+.. || |++++ +.+.+...+.
T Consensus 185 ~~--------~~pI~vggGI~~~e~~~~~~~~AD-gvVvG--Saiv~~~~~~ 225 (242)
T cd04724 185 YT--------DLPIAVGFGISTPEQAAEVAKYAD-GVIVG--SALVKIIEEG 225 (242)
T ss_pred cC--------CCcEEEEccCCCHHHHHHHHccCC-EEEEC--HHHHHHHHhc
Confidence 31 34577888888 4544444 66 78887 4566666553
No 264
>PRK07411 hypothetical protein; Validated
Probab=49.21 E-value=2.7e+02 Score=27.30 Aligned_cols=138 Identities=11% Similarity=0.082 Sum_probs=74.4
Q ss_pred CCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceeccccc-
Q 020024 142 INLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEII- 220 (332)
Q Consensus 142 ~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~- 220 (332)
++..++..+.+++.+..--.+--+++++ ..+.||-+|--+..+-..|...|+..+.++=.+..-..+ +.-++.
T Consensus 11 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~-----~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sN-L~RQ~l~ 84 (390)
T PRK07411 11 LSKDEYERYSRHLILPEVGLEGQKRLKA-----ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSN-LQRQVIH 84 (390)
T ss_pred CCHHHHHHhhceechhhcCHHHHHHHhc-----CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccc-cCcCccc
Confidence 4555555554444443222333444553 567777665235666666777787655444333221111 111111
Q ss_pred ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCcc---chHHhhhcCeeEEEcCC-----hhHHHHhHhcCCeee
Q 020024 221 EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVG---DLLCLLEADIGIVIGSS-----SSLRRVGSQFGVTFI 288 (332)
Q Consensus 221 ~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~---Dl~~l~~Ad~gvv~~~~-----~~L~~~~~~~~~~~~ 288 (332)
..-..|..|.....+.+.+.+. .-++..+-...+ +...+...|+ |+-+.+ -.|-++|.+.++|++
T Consensus 85 ~~~dvG~~Ka~~a~~~l~~~np--~v~v~~~~~~~~~~~~~~~~~~~D~-Vvd~~d~~~~r~~ln~~~~~~~~p~v 157 (390)
T PRK07411 85 GTSWVGKPKIESAKNRILEINP--YCQVDLYETRLSSENALDILAPYDV-VVDGTDNFPTRYLVNDACVLLNKPNV 157 (390)
T ss_pred ChHHCCCcHHHHHHHHHHHHCC--CCeEEEEecccCHHhHHHHHhCCCE-EEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 1222356799888888877664 245666554443 3456777884 333322 246688999998877
No 265
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=48.92 E-value=1.9e+02 Score=25.56 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=33.3
Q ss_pred CceEEEEeCCccch------HHhhhcCeeEEEcCC------hhHHHHhHhcCCeeeec
Q 020024 245 KNLSVYIGDSVGDL------LCLLEADIGIVIGSS------SSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 245 ~~~viyiGDs~~Dl------~~l~~Ad~gvv~~~~------~~L~~~~~~~~~~~~p~ 290 (332)
...|+++|++..+- ..+..||+-++++.+ ..|...+.++|.+++-+
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~i 188 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIV 188 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEE
Confidence 36899999998773 233458888888855 46777888888777643
No 266
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=48.73 E-value=35 Score=34.19 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=28.3
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhc
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSA 196 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~ 196 (332)
+.-.|....+|+.++++| ..+.++|.+- -+|...++...
T Consensus 182 i~k~~~l~~~L~~lr~~G---KklFLiTNS~-~~yt~~~M~yl 220 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAG---KKLFLITNSP-FDYTNAVMSYL 220 (448)
T ss_dssp EE--CHHHHHHHHHHCCT----EEEEE-SS--HHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHhcC---ceEEEecCCC-Cchhhhhhhhc
Confidence 444778999999999998 8899999874 68888887653
No 267
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=47.56 E-value=8.1 Score=41.92 Aligned_cols=29 Identities=24% Similarity=0.191 Sum_probs=19.1
Q ss_pred CCCcccccccccCCCCCCceEEEEeCCCCcccc
Q 020024 13 LAQPTVVPLIKGHNPAGDRLIIFSDFDLTCTIV 45 (332)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~lvi~DFD~TiT~~ 45 (332)
++...++...+. .++.++++||||||+..
T Consensus 582 l~~~~i~~~y~~----~~~rlI~LDyDGTLlp~ 610 (854)
T PLN02205 582 LSMEHIVSAYKR----TTTRAILLDYDGTLMPQ 610 (854)
T ss_pred cCHHHHHHHHHh----hcCeEEEEecCCcccCC
Confidence 333444444433 35689999999999953
No 268
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=47.04 E-value=13 Score=33.46 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=38.4
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeC----CccchHHhhhcCe-eEEEcCChhHHHHhHh
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGD----SVGDLLCLLEADI-GIVIGSSSSLRRVGSQ 282 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGD----s~~Dl~~l~~Ad~-gvv~~~~~~L~~~~~~ 282 (332)
..|-||.-.|+.+... ..++++|+|| |=||.+....+++ |+.+..+....+.|++
T Consensus 158 p~GwDKty~Lr~l~~~----~~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p~DT~~~l~~ 217 (220)
T PF03332_consen 158 PKGWDKTYCLRHLEDE----GFDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSPEDTIKQLKE 217 (220)
T ss_dssp ETT-SGGGGGGGTTTT----T-SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHhc----ccceEEEEehhccCCCCCceeeecCCccEEEeCCHHHHHHHHHH
Confidence 4466888777765432 1478999999 6699999988755 8888877666666654
No 269
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=46.15 E-value=14 Score=31.24 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCceEEEEeCCCCccc
Q 020024 29 GDRLIIFSDFDLTCTI 44 (332)
Q Consensus 29 ~~~~lvi~DFD~TiT~ 44 (332)
.+|+.+|+|.|+||..
T Consensus 4 ~~kl~LVLDLDeTLih 19 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIH 19 (156)
T ss_pred CCceEEEEeCCCCccc
Confidence 5788999999999995
No 270
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=45.59 E-value=58 Score=28.48 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN 199 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~ 199 (332)
+.+...+.|+.++++| +++++.|+-- ..-+..+++.++++
T Consensus 16 i~~~~~~al~~l~~~G---i~~~~aTGR~-~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 16 INESALEAIRKAESVG---IPVVLVTGNS-VQFARALAKLIGTP 55 (225)
T ss_pred cCHHHHHHHHHHHHCC---CEEEEEcCCc-hHHHHHHHHHhCCC
Confidence 3344556788889899 9999999863 66677777777754
No 271
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=44.80 E-value=12 Score=33.25 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=24.1
Q ss_pred EEeCCccchHHhhhcCe--eEEEcCChhHHHHhHhcCCeeeecC
Q 020024 250 YIGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIPLY 291 (332)
Q Consensus 250 yiGDs~~Dl~~l~~Ad~--gvv~~~~~~L~~~~~~~~~~~~p~~ 291 (332)
.+=||..|+..+..|-- |+++.++..+.++|++.|+.+++-.
T Consensus 150 G~ldS~~D~dvl~LA~El~a~lvt~D~gi~~~A~~lGi~~i~~~ 193 (205)
T PF08745_consen 150 GILDSREDIDVLLLALELDAVLVTDDYGIQNWAEKLGIRFIDAR 193 (205)
T ss_dssp -----HHHHHHHHHHHHHT--EE---HHHHHHHHHTT--EE---
T ss_pred ccCCChHhHHHHHHHHHcCCEEEeCCHhHHHHHHHCCCEEEecc
Confidence 35589999998888733 7888889999999999999999754
No 272
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=44.18 E-value=15 Score=32.67 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=34.9
Q ss_pred CCCcchHHHHHHHHHHhCCCCCceEEEEeC----CccchHHhhhcC-eeEEEcCChhHHHHhHh
Q 020024 224 ESPIDKVQAFNNTLEKYGTDRKNLSVYIGD----SVGDLLCLLEAD-IGIVIGSSSSLRRVGSQ 282 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~~~~~~viyiGD----s~~Dl~~l~~Ad-~gvv~~~~~~L~~~~~~ 282 (332)
+.|-+|.-.|+.+-.. ..+.+.++|| |-||.+-..... +|.-+..+....+.|++
T Consensus 189 P~GWDKtyCLqhle~d----gf~~IhFFGDkT~~GGNDyEIf~dprtiGhsV~~PdDT~~~~~~ 248 (252)
T KOG3189|consen 189 PKGWDKTYCLQHLEKD----GFDTIHFFGDKTMPGGNDYEIFADPRTIGHSVTSPDDTVRICEE 248 (252)
T ss_pred CCCcchhHHHHHhhhc----CCceEEEeccccCCCCCcceeeeCCccccccccCchHHHHHHHH
Confidence 4567787777654432 2578889999 568888776654 36555555555666654
No 273
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=43.92 E-value=13 Score=40.63 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=27.6
Q ss_pred CCCcchHHHHHHHHHHhCC-----CCCceEEEEeCCcc-chHHhhh
Q 020024 224 ESPIDKVQAFNNTLEKYGT-----DRKNLSVYIGDSVG-DLLCLLE 263 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~~-----~~~~~viyiGDs~~-Dl~~l~~ 263 (332)
..+.+|-.++++++..... ...+-|+++||-.+ |=.|...
T Consensus 764 P~gvnKG~Av~~ll~~~~~~~~~~~~~DFvlc~GDd~~~DEdmF~~ 809 (934)
T PLN03064 764 PVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDIYTF 809 (934)
T ss_pred cCCCCHHHHHHHHHHhhhhccccCCCCCEEEEeCCCCCCcHHHHHH
Confidence 3467899999999875421 12467999999653 8666555
No 274
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=43.07 E-value=14 Score=39.88 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=29.2
Q ss_pred CCCcchHHHHHHHHHHhC-----CCCCceEEEEeCCc-cchHHhhhcC
Q 020024 224 ESPIDKVQAFNNTLEKYG-----TDRKNLSVYIGDSV-GDLLCLLEAD 265 (332)
Q Consensus 224 ~~~~~K~~~l~~~~~~~~-----~~~~~~viyiGDs~-~Dl~~l~~Ad 265 (332)
..+.+|-.++++++.+.. ....+-+.++||.. +|=.|++.-+
T Consensus 674 p~gvnKG~Av~~ll~~~~~~~~~~~~~dfvl~~Gdd~~~DEdmF~~l~ 721 (797)
T PLN03063 674 AIGVTKGAAIGRILGEIVHNKSMTTPIDFVFCSGYFLEKDEDVYTFFE 721 (797)
T ss_pred cCCCChHHHHHHHHHHhhhccccCCCCCEEEEeCCCCCCcHHHHHhcc
Confidence 346789999999987541 01235788999985 4877777543
No 275
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=42.65 E-value=15 Score=33.79 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=40.9
Q ss_pred HHhhhcCeeEEEcCChhHHHHhHhcCCeeeecCchhhhhhhhhhcCCCCCcccc-CCEEEEeCCHHHHHHhH
Q 020024 259 LCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKEK-SGILYTVSSWAEVHAFI 329 (332)
Q Consensus 259 ~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~~~W~~i~~~l 329 (332)
.++-.|.++++..-.....+.|++.|+||+.|.+ +.|... +..++.|+||++.-+.+
T Consensus 68 ~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR--------------p~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 68 DAVIDATHPFAAEISQNAIEACRELGIPYLRFER--------------PSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred cEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc--------------CCcccCCCCeEEEeCCHHHHHHHH
Confidence 3444666676655567899999999999999885 333332 23478889999988777
No 276
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=42.60 E-value=2.9e+02 Score=25.90 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=59.2
Q ss_pred CcEEEEccc-cCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeC
Q 020024 175 ANVHVLSYC-WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 253 (332)
Q Consensus 175 ~~~~IvS~g-~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD 253 (332)
..+.|+-.| . .--|..-|...|+..+.|+=++..-..+...-.+...-.-|..|..+..+.+.+.+. +-++-.+-
T Consensus 20 s~VLIvG~gGL-G~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp--~V~V~~~~- 95 (286)
T cd01491 20 SNVLISGLGGL-GVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP--YVPVTVST- 95 (286)
T ss_pred CcEEEEcCCHH-HHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC--CCEEEEEe-
Confidence 466666543 3 333334444558765666555433221111111112222345688887777777664 23444443
Q ss_pred CccchHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeeec
Q 020024 254 SVGDLLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 254 s~~Dl~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p~ 290 (332)
+..|-..+...|+-|....+ ..+-++|++++++++--
T Consensus 96 ~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a 136 (286)
T cd01491 96 GPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISA 136 (286)
T ss_pred ccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 23455667778843333322 25678999999988854
No 277
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=42.28 E-value=17 Score=34.04 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.8
Q ss_pred HHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC
Q 020024 163 FFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN 199 (332)
Q Consensus 163 ~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~ 199 (332)
-+..+++.| .-+++=|-| +++.+...++..+++
T Consensus 150 sL~~Lk~~g---~vLvLWSyG-~~eHV~~sl~~~~L~ 182 (297)
T PF05152_consen 150 SLRELKEQG---CVLVLWSYG-NREHVRHSLKELKLE 182 (297)
T ss_pred HHHHHHHcC---CEEEEecCC-CHHHHHHHHHHhCCc
Confidence 355667777 788888988 589999999887764
No 278
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=41.69 E-value=50 Score=30.50 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHHhcCC
Q 020024 157 QDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGL 198 (332)
Q Consensus 157 rpg~~e~l~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~ 198 (332)
.||+.++|+.++++| .+++++|.+- +..-+..-|+.+|+
T Consensus 20 ~~ga~e~l~~L~~~g---~~~~~~Tnns~~~~~~~~~~l~~~G~ 60 (279)
T TIGR01452 20 VPGAPELLDRLARAG---KAALFVTNNSTKSRAEYALKFARLGF 60 (279)
T ss_pred CcCHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 467889999999988 9999999752 12222345566676
No 279
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=41.69 E-value=26 Score=31.17 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=33.8
Q ss_pred EeCCccchHHhhhcCe--eEEEcCChhHHHHhHhcCCeeee
Q 020024 251 IGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIP 289 (332)
Q Consensus 251 iGDs~~Dl~~l~~Ad~--gvv~~~~~~L~~~~~~~~~~~~p 289 (332)
+=||.+|+..+..|-- |+++.++-.+..+|+..|+++.+
T Consensus 154 iLdS~~DidvlaLA~ELda~lvTdD~giqn~A~~Lgi~~~~ 194 (206)
T TIGR03875 154 ILDSAEDLDVLLLAKELDAAVVSADEGIRKWAERLGLRFVD 194 (206)
T ss_pred ccCchhhHHHHHHHHHcCcEEEeCcHHHHHHHHHcCCeeec
Confidence 5599999998887632 78888898999999999999987
No 280
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=41.40 E-value=18 Score=33.31 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHhcCCeeeecCchhhhhhhhhhcCCCCC
Q 020024 229 KVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSN 308 (332)
Q Consensus 229 K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 308 (332)
...-|.+++.+++ +.+.-.|.++++..-.....+.|++.|+||+.|++. .
T Consensus 53 ~~~~l~~~l~~~~----------------i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~--------------~ 102 (248)
T PRK08057 53 GAEGLAAYLREEG----------------IDLVIDATHPYAAQISANAAAACRALGIPYLRLERP--------------S 102 (248)
T ss_pred CHHHHHHHHHHCC----------------CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCC--------------C
Confidence 4456677776533 334446777777666678999999999999998852 2
Q ss_pred ccc-cCCEEEEeCCHHHHHHhH
Q 020024 309 WKE-KSGILYTVSSWAEVHAFI 329 (332)
Q Consensus 309 ~~~-~~~~ly~~~~W~~i~~~l 329 (332)
|.. ....++.|++|++.-+++
T Consensus 103 ~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 103 WLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred cCCCCCCCEEEECCHHHHHHHh
Confidence 322 223567778887776655
No 281
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=41.35 E-value=94 Score=28.70 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 227 IDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 227 ~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
.+|....+++..+++.. .-.-++||||..-- ..|+..+|||.+++.
T Consensus 213 vGK~~cFe~I~~Rfg~p-~~~f~~IGDG~eEe-------------------~aAk~l~wPFw~I~~ 258 (274)
T TIGR01658 213 VGKLQCFKWIKERFGHP-KVRFCAIGDGWEEC-------------------TAAQAMNWPFVKIDL 258 (274)
T ss_pred cchHHHHHHHHHHhCCC-CceEEEeCCChhHH-------------------HHHHhcCCCeEEeec
Confidence 46999999999988752 24667888886432 455667888888765
No 282
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=41.32 E-value=15 Score=31.36 Aligned_cols=13 Identities=46% Similarity=0.353 Sum_probs=11.4
Q ss_pred eEEEEeCCCCccc
Q 020024 32 LIIFSDFDLTCTI 44 (332)
Q Consensus 32 ~lvi~DFD~TiT~ 44 (332)
.++++|.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 4789999999994
No 283
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=41.09 E-value=13 Score=33.36 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeee
Q 020024 159 GCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANE 207 (332)
Q Consensus 159 g~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~ 207 (332)
++.+.|+.|.+.. +..++|||+- +...++.+. +++++.++++.
T Consensus 23 ~~~~~L~~La~~~--~~~v~IvSGR-~~~~~~~~~---~~~~i~l~geh 65 (235)
T PF02358_consen 23 ELRELLRALAADP--NNTVAIVSGR-SLDDLERFG---GIPNIGLAGEH 65 (235)
T ss_dssp HHHHHHHHHHHHS--E--EEEE-SS--HHHHHHH----S-SS-EEEEGG
T ss_pred HHHHHHHHHhccC--CCEEEEEEeC-CHHHhHHhc---CCCCceEEEEe
Confidence 3445555566543 1469999975 344433332 45556666654
No 284
>PRK04358 hypothetical protein; Provisional
Probab=41.02 E-value=24 Score=31.68 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=34.6
Q ss_pred EeCCccchHHhhhcCe--eEEEcCChhHHHHhHhcCCeeeec
Q 020024 251 IGDSVGDLLCLLEADI--GIVIGSSSSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 251 iGDs~~Dl~~l~~Ad~--gvv~~~~~~L~~~~~~~~~~~~p~ 290 (332)
+=||.+|+..+..|-- |+++.++-.+..+|+..|+++.+-
T Consensus 158 ~ldS~~DidvlaLA~ELda~lvTdD~giqn~A~~LGI~~~~~ 199 (217)
T PRK04358 158 ILDSAEDLDVLLLAKELDAAVVSADEGIRKWAERLGLRFVDA 199 (217)
T ss_pred cccchhhHHHHHHHHHhCCEEEeCCHHHHHHHHHcCCeeecH
Confidence 7799999998887732 788888989999999999999973
No 285
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=40.67 E-value=1.6e+02 Score=30.85 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcc---ccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCC-C-cchHHHHH
Q 020024 160 CTTFFQKVVKNENLNANVHVLSY---CWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVES-P-IDKVQAFN 234 (332)
Q Consensus 160 ~~e~l~~l~~~g~~~~~~~IvS~---g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~-~-~~K~~~l~ 234 (332)
..+.++.+...| -+++++|+ || ++...++...+.+ +.++...+.. ..+.+...+.. . ..+...++
T Consensus 467 ~~~~l~~a~~~~---kgvi~~t~H~gnw--E~~~~~~~~~~~~-~~~i~r~~~~----~R~~~g~~~i~~~~~~~~~~~r 536 (656)
T PRK15174 467 VEQFFQRLQLDQ---RGCIIVSAHLGAM--YAGPMILSLLEMN-SKWVASTPGV----LKGGYGERLISVSDKSEADVVR 536 (656)
T ss_pred HHHHHHHHHhcC---CCEEEEecCcchh--hHHHHHHHHcCCC-ceeeecchHH----HHHhcCCceeccCCCCcchHHH
Confidence 344466666667 78999986 67 5666666655543 2333322221 11111112211 0 11222333
Q ss_pred HHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 235 NTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 235 ~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
++...... +.-+.+.+|-...-. -..++. |.-..-..-..+++.+.+.|++|...
T Consensus 537 ~i~~aLk~--g~~v~il~Dq~~~~~-~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~~ 592 (656)
T PRK15174 537 ACMQTLHS--GQSLVVAIDGALNLS-APTIDFFGQQITYSTFCSRLAWKMHLPTVFSVP 592 (656)
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCC-CceeccCCCccCcCcHHHHHHHHHCCCEEEeEE
Confidence 34333221 356778988773211 122221 21122224577999999999998764
No 286
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=39.44 E-value=82 Score=29.86 Aligned_cols=44 Identities=5% Similarity=-0.034 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeee
Q 020024 160 CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANE 207 (332)
Q Consensus 160 ~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~ 207 (332)
..+.|++++++| +++++.|+.. ..-+..+.+.+++..-.|..|-
T Consensus 23 a~~aL~~Lk~~G---I~vVlaTGRt-~~ev~~l~~~Lgl~~p~I~eNG 66 (302)
T PRK12702 23 ARQALAALERRS---IPLVLYSLRT-RAQLEHLCRQLRLEHPFICEDG 66 (302)
T ss_pred HHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHhCCCCeEEEeCC
Confidence 456788999999 9999999874 6677778888776432334443
No 287
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=39.22 E-value=18 Score=30.14 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=11.6
Q ss_pred eEEEEeCCCCccccc
Q 020024 32 LIIFSDFDLTCTIVD 46 (332)
Q Consensus 32 ~lvi~DFD~TiT~~D 46 (332)
+++|+|.||||....
T Consensus 1 k~LVlDLD~TLv~~~ 15 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSS 15 (159)
T ss_dssp EEEEEE-CTTTEEEE
T ss_pred CEEEEeCCCcEEEEe
Confidence 379999999999754
No 288
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=39.11 E-value=1.9e+02 Score=26.38 Aligned_cols=106 Identities=16% Similarity=0.305 Sum_probs=56.6
Q ss_pred CcEEEEcc-----ccCHHHHHHHHHhcCCCcceEEeee-eEEc-CceecccccccCCCCc---chHHHHHHHHHHhCCCC
Q 020024 175 ANVHVLSY-----CWCGDLIRASFSSAGLNALNVHANE-FSFK-ESISTGEIIEKVESPI---DKVQAFNNTLEKYGTDR 244 (332)
Q Consensus 175 ~~~~IvS~-----g~s~~~I~~~l~~~g~~~~~I~aN~-l~~~-~g~~tG~~~~~~~~~~---~K~~~l~~~~~~~~~~~ 244 (332)
.++..|+. +|..++++.+.+.+|++ .+++..+ ..+. +....+ ...+.. -+...+.++....+
T Consensus 60 ~~l~av~vd~g~~~~~~~~~~~~~~~lgI~-~~v~~~~~~~~~~~~~~~~----~~~c~~c~~~R~~~l~~~a~~~g--- 131 (258)
T PRK10696 60 FELVAVNLDQKQPGFPEHVLPEYLESLGVP-YHIEEQDTYSIVKEKIPEG----KTTCSLCSRLRRGILYRTARELG--- 131 (258)
T ss_pred eEEEEEEecCCCCCCCHHHHHHHHHHhCCC-EEEEEecchhhhhhhhccC----CChhHHHHHHHHHHHHHHHHHcC---
Confidence 46666663 35567777788888875 3333211 1110 000011 111112 23445555555443
Q ss_pred CceEEEEeCCccchHH------hhh---cCe--------e-E-EEc-----CChhHHHHhHhcCCeeee
Q 020024 245 KNLSVYIGDSVGDLLC------LLE---ADI--------G-I-VIG-----SSSSLRRVGSQFGVTFIP 289 (332)
Q Consensus 245 ~~~viyiGDs~~Dl~~------l~~---Ad~--------g-v-v~~-----~~~~L~~~~~~~~~~~~p 289 (332)
...|+.|...+|..- +.- ++. | + +++ ....+.++|+++|+|++|
T Consensus 132 -~~~Ia~GH~~dD~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~~ 199 (258)
T PRK10696 132 -ATKIALGHHRDDILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPIIP 199 (258)
T ss_pred -CCEEEEcCchHHHHHHHHHHHHhCCcccccCCeeecCCCceeEEecCccCCHHHHHHHHHHcCCCEee
Confidence 468999999999653 110 110 1 1 222 235899999999999875
No 289
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=38.78 E-value=47 Score=27.92 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeee
Q 020024 158 DGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANE 207 (332)
Q Consensus 158 pg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~ 207 (332)
.+..++=+.|++.| ++++|+.+.. .+.+..+++.+++ .+|++|+
T Consensus 53 ~sL~~L~~~L~~~g---~~L~v~~g~~-~~~l~~l~~~~~~--~~V~~~~ 96 (165)
T PF00875_consen 53 ESLADLQESLRKLG---IPLLVLRGDP-EEVLPELAKEYGA--TAVYFNE 96 (165)
T ss_dssp HHHHHHHHHHHHTT---S-EEEEESSH-HHHHHHHHHHHTE--SEEEEE-
T ss_pred HHHHHHHHHHHhcC---cceEEEecch-HHHHHHHHHhcCc--CeeEecc
Confidence 34456666778878 9999999874 7888888888775 5788875
No 290
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=38.56 E-value=1.4e+02 Score=30.65 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHH
Q 020024 160 CTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEK 239 (332)
Q Consensus 160 ~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~ 239 (332)
+.=+|+.+.++| ..++|+|+|. .-+.+..-++|-+ -||+ .+......++|+++...
T Consensus 532 CqfLI~~HE~Rg---DKiIVFsDnv--fALk~YAikl~Kp--fIYG-----------------~Tsq~ERm~ILqnFq~n 587 (776)
T KOG1123|consen 532 CQFLIKFHERRG---DKIIVFSDNV--FALKEYAIKLGKP--FIYG-----------------PTSQNERMKILQNFQTN 587 (776)
T ss_pred HHHHHHHHHhcC---CeEEEEeccH--HHHHHHHHHcCCc--eEEC-----------------CCchhHHHHHHHhcccC
Confidence 344567777778 8999999974 3444444343422 1221 11223455666665532
Q ss_pred hCCCCCceEEE---EeCCccchHHhhhcCeeEEEcCC--------hhHHHHhHh
Q 020024 240 YGTDRKNLSVY---IGDSVGDLLCLLEADIGIVIGSS--------SSLRRVGSQ 282 (332)
Q Consensus 240 ~~~~~~~~viy---iGDs~~Dl~~l~~Ad~gvv~~~~--------~~L~~~~~~ 282 (332)
+.-++|| |||..-||| .|.+-|-+... .+|-++.++
T Consensus 588 ----~~vNTIFlSKVgDtSiDLP---EAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 588 ----PKVNTIFLSKVGDTSIDLP---EANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred ----CccceEEEeeccCccccCC---cccEEEEEcccccchHHHHHHHHHHHHH
Confidence 2245665 899999998 56644444422 356666655
No 291
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=38.42 E-value=16 Score=31.53 Aligned_cols=15 Identities=27% Similarity=-0.044 Sum_probs=12.7
Q ss_pred ceEEEEeCCCCcccc
Q 020024 31 RLIIFSDFDLTCTIV 45 (332)
Q Consensus 31 ~~lvi~DFD~TiT~~ 45 (332)
-..+|||+|.|||.-
T Consensus 41 ik~li~DkDNTL~~~ 55 (168)
T PF09419_consen 41 IKALIFDKDNTLTPP 55 (168)
T ss_pred ceEEEEcCCCCCCCC
Confidence 369999999999953
No 292
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=38.40 E-value=12 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhh
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE 263 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~ 263 (332)
++++++++ ..+||+||=..|+.++..
T Consensus 7 VqQLLK~f-----G~~IY~gdr~~DielM~~ 32 (62)
T PF06014_consen 7 VQQLLKKF-----GIIIYVGDRLWDIELMEI 32 (62)
T ss_dssp HHHHHHTT-----S-----S-HHHHHHHHHH
T ss_pred HHHHHHHC-----CEEEEeCChHHHHHHHHH
Confidence 45677765 468999999999999864
No 293
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=37.90 E-value=2.8e+02 Score=24.25 Aligned_cols=112 Identities=13% Similarity=0.211 Sum_probs=57.8
Q ss_pred CcEEEEccc-cCHHHHHHHHHhcCCCcceEEeeeeEEcCceeccccccc--CCCCcchHHHHHHHHHHhCCCCCceEEEE
Q 020024 175 ANVHVLSYC-WCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEK--VESPIDKVQAFNNTLEKYGTDRKNLSVYI 251 (332)
Q Consensus 175 ~~~~IvS~g-~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~--~~~~~~K~~~l~~~~~~~~~~~~~~viyi 251 (332)
..+.|+=.| . ..-+..-|...|+..+.++=++..-..+...-.+... ...|..|..++.+.+.+.+.. -++..+
T Consensus 20 s~VlviG~ggl-Gsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~--v~i~~~ 96 (198)
T cd01485 20 AKVLIIGAGAL-GAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPN--VKLSIV 96 (198)
T ss_pred CcEEEECCCHH-HHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCC--CEEEEE
Confidence 466666443 3 3344444455587655555444322111100011111 334667998888888776642 344444
Q ss_pred eCCc-----cchHHhhhcCeeEEEcCC-----hhHHHHhHhcCCeeeec
Q 020024 252 GDSV-----GDLLCLLEADIGIVIGSS-----SSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 252 GDs~-----~Dl~~l~~Ad~gvv~~~~-----~~L~~~~~~~~~~~~p~ 290 (332)
-... ++-..+...|+ |+...+ ..+.++|+++++|++--
T Consensus 97 ~~~~~~~~~~~~~~~~~~dv-Vi~~~d~~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTL-VIATEENYERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred ecccccchhhHHHHHhCCCE-EEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3322 22234556774 233322 25678999999988743
No 294
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=37.26 E-value=12 Score=32.31 Aligned_cols=18 Identities=28% Similarity=-0.018 Sum_probs=15.3
Q ss_pred CceEEEEeCCCCcccccc
Q 020024 30 DRLIIFSDFDLTCTIVDS 47 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~Dt 47 (332)
..+.++.|.|||||..+|
T Consensus 5 ~~~~~ciDIDGtit~~~t 22 (194)
T COG5663 5 FQLRCCIDIDGTITDDPT 22 (194)
T ss_pred hHhheeeccCCceecCcc
Confidence 456789999999999877
No 295
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=37.12 E-value=76 Score=28.27 Aligned_cols=48 Identities=23% Similarity=0.395 Sum_probs=40.3
Q ss_pred CceEEEEeCC---ccchHHhhhcCeeEEEcCC------hhHHHHhHhcCCeeeecCc
Q 020024 245 KNLSVYIGDS---VGDLLCLLEADIGIVIGSS------SSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 245 ~~~viyiGDs---~~Dl~~l~~Ad~gvv~~~~------~~L~~~~~~~~~~~~p~~~ 292 (332)
+..++|+|=+ .+|++|+..-|+-+++..+ -.+..+|++.|.+++-++.
T Consensus 65 G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~ 121 (202)
T COG0794 65 GTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITS 121 (202)
T ss_pred CCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3689999944 8999999999987777655 3789999999999998876
No 296
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=36.76 E-value=21 Score=29.60 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=13.7
Q ss_pred CceEEEEeCCCCcccc
Q 020024 30 DRLIIFSDFDLTCTIV 45 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~ 45 (332)
+|+++|+|.|+||...
T Consensus 1 ~k~~lvldld~tl~~~ 16 (148)
T smart00577 1 KKKTLVLDLDETLVHS 16 (148)
T ss_pred CCcEEEEeCCCCeECC
Confidence 4679999999999964
No 297
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=36.07 E-value=30 Score=32.81 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=22.3
Q ss_pred ceEEEEeCCc-cchHHhhhcCe-eEEEcC
Q 020024 246 NLSVYIGDSV-GDLLCLLEADI-GIVIGS 272 (332)
Q Consensus 246 ~~viyiGDs~-~Dl~~l~~Ad~-gvv~~~ 272 (332)
+++++|||+. +|+.+...++. .+.+..
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~silV~t 292 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSCLVKT 292 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEEEecc
Confidence 5899999998 99999999987 455543
No 298
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=35.79 E-value=22 Score=30.16 Aligned_cols=13 Identities=38% Similarity=0.243 Sum_probs=11.7
Q ss_pred eEEEEeCCCCccc
Q 020024 32 LIIFSDFDLTCTI 44 (332)
Q Consensus 32 ~lvi~DFD~TiT~ 44 (332)
.+++||.||||+.
T Consensus 2 ~~~~~d~dg~l~~ 14 (161)
T TIGR01261 2 KILFIDRDGTLIE 14 (161)
T ss_pred CEEEEeCCCCccc
Confidence 4899999999997
No 299
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=35.29 E-value=52 Score=34.44 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=34.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhc
Q 020024 153 RLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSA 196 (332)
Q Consensus 153 ~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~ 196 (332)
.+++||++.+|++.+.+- ++++|.+=| ++.|...+++-.
T Consensus 199 ~vKlRP~~~efL~~~skl----femhVyTmg-~R~YA~~i~~li 237 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL----FEMHVYTMG-TRDYALEIAKLI 237 (635)
T ss_pred EEEeCccHHHHHHHHHhh----ceeEEEecc-chHHHHHHHHHh
Confidence 378999999999999964 899999999 599999988764
No 300
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=34.96 E-value=3.4e+02 Score=24.48 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=58.8
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceeccccc-ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEII-EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 253 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~-~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD 253 (332)
..+.|+=.|--...+...|...|+..+.++=++..-..+. .-++. ....-|..|...+.+.+...+.. -++..+-+
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl-nRq~~~~~~diG~~Kae~~~~~l~~inP~--~~V~~~~~ 88 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL-NRQIHALLSTVGKPKVEVMAERIRDINPE--CEVDAVEE 88 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh-cchhCcChhhCCCcHHHHHHHHHHHHCCC--cEEEEeee
Confidence 4666666542366777777777875544443332211111 00111 12234567999998888776642 34444432
Q ss_pred Ccc--chHHhh--hcCeeEEEcC-C-----hhHHHHhHhcCCeeee
Q 020024 254 SVG--DLLCLL--EADIGIVIGS-S-----SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 254 s~~--Dl~~l~--~Ad~gvv~~~-~-----~~L~~~~~~~~~~~~p 289 (332)
-.+ .+..+. ..|+ ++.. + ..|.++|+++++|++-
T Consensus 89 ~i~~~~~~~l~~~~~D~--VvdaiD~~~~k~~L~~~c~~~~ip~I~ 132 (231)
T cd00755 89 FLTPDNSEDLLGGDPDF--VVDAIDSIRAKVALIAYCRKRKIPVIS 132 (231)
T ss_pred ecCHhHHHHHhcCCCCE--EEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 222 122222 3563 3332 2 3688999999999885
No 301
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=34.80 E-value=1.6e+02 Score=27.12 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=63.1
Q ss_pred HHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeee-eEEcC-ceecccccccCCCCcchHHHHHHHHHHh
Q 020024 163 FFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANE-FSFKE-SISTGEIIEKVESPIDKVQAFNNTLEKY 240 (332)
Q Consensus 163 ~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~-l~~~~-g~~tG~~~~~~~~~~~K~~~l~~~~~~~ 240 (332)
-++++++ ..++|+-.|--+.+..+.|.+-|+..+.++=-+ +...+ ++.-... ....|.-|+.+|++.+...
T Consensus 24 ~lekl~~-----~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~--~~~iGk~Kv~vm~eri~~I 96 (263)
T COG1179 24 GLEKLKQ-----AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHAL--LGDIGKPKVEVMKERIKQI 96 (263)
T ss_pred HHHHHhh-----CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhh--hhhcccHHHHHHHHHHHhh
Confidence 3445554 356666655457888888888787654433211 11111 1111111 1234567999998887765
Q ss_pred CCCCCceE-----EEEeCCccchHHhhhcCeeEEEc------CChhHHHHhHhcCCeeeecC
Q 020024 241 GTDRKNLS-----VYIGDSVGDLLCLLEADIGIVIG------SSSSLRRVGSQFGVTFIPLY 291 (332)
Q Consensus 241 ~~~~~~~v-----iyiGDs~~Dl~~l~~Ad~gvv~~------~~~~L~~~~~~~~~~~~p~~ 291 (332)
+.. -++ .+-.|...|+..- .-| .++. .+-.|..+|+++++|++.--
T Consensus 97 nP~--c~V~~~~~f~t~en~~~~~~~-~~D--yvIDaiD~v~~Kv~Li~~c~~~ki~vIss~ 153 (263)
T COG1179 97 NPE--CEVTAINDFITEENLEDLLSK-GFD--YVIDAIDSVRAKVALIAYCRRNKIPVISSM 153 (263)
T ss_pred CCC--ceEeehHhhhCHhHHHHHhcC-CCC--EEEEchhhhHHHHHHHHHHHHcCCCEEeec
Confidence 532 222 2334444444222 233 4443 23589999999999888543
No 302
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=34.45 E-value=27 Score=30.92 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=14.3
Q ss_pred CCCceEEEEeCCCCccc
Q 020024 28 AGDRLIIFSDFDLTCTI 44 (332)
Q Consensus 28 ~~~~~lvi~DFD~TiT~ 44 (332)
.+.+.++|.|.|+||..
T Consensus 18 ~~~kklLVLDLDeTLvh 34 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFD 34 (195)
T ss_pred CCCCcEEEEeCCCceEc
Confidence 35678999999999995
No 303
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=33.59 E-value=1.4e+02 Score=28.12 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcC
Q 020024 157 QDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAG 197 (332)
Q Consensus 157 rpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g 197 (332)
-+|+..+-+.|+.-| .++.||+.-.+...++..++..+
T Consensus 62 P~GA~aLa~aL~~lG---~~~~ivtd~~~~~~~~~~~~~~~ 99 (291)
T PF14336_consen 62 PPGAAALARALQALG---KEVVIVTDERCAPVVKAAVRAAG 99 (291)
T ss_pred hHHHHHHHHHHHHcC---CeEEEEECHHHHHHHHHHHHHHh
Confidence 468888999999888 89999998766677777766544
No 304
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=1.2e+02 Score=25.78 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC-cceEEe
Q 020024 157 QDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN-ALNVHA 205 (332)
Q Consensus 157 rpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~-~~~I~a 205 (332)
-||+.++.+.++++|- ..+++||+|- ......+.+..|.+ +++.++
T Consensus 58 lPgY~~~~d~f~~kGV--D~I~cVSVND-~FVm~AWak~~g~~~~I~fi~ 104 (165)
T COG0678 58 LPGYLELADEFKAKGV--DEIYCVSVND-AFVMNAWAKSQGGEGNIKFIP 104 (165)
T ss_pred CccHHHHHHHHHHcCC--ceEEEEEeCc-HHHHHHHHHhcCCCccEEEec
Confidence 5899999999998872 4689999983 55566666666664 444443
No 305
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=31.81 E-value=3.7e+02 Score=23.89 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=60.2
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDS 254 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs 254 (332)
..+.|+-+|-....+-.-|...|+..+.++=++..-..+.-...+......|..|..++.+.+.+.+.. -++-.+-..
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~--~~i~~~~~~ 99 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD--VEIEAYNER 99 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC--CEEEEecce
Confidence 567777654235556666666787555444333222111111111111234667999998888776542 233333322
Q ss_pred c---cchHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeeec
Q 020024 255 V---GDLLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 255 ~---~Dl~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p~ 290 (332)
. +....+..+|+-|...++ ..+.++|.++++|++--
T Consensus 100 i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 100 LDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred eCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2 222345568853322222 25788899999888753
No 306
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=31.27 E-value=1e+02 Score=27.65 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHHcCCCCCcEEEEcc--ccCHHHHHHHHHh-cCC
Q 020024 155 SLQDGCTTFFQKVVKNENLNANVHVLSY--CWCGDLIRASFSS-AGL 198 (332)
Q Consensus 155 ~lrpg~~e~l~~l~~~g~~~~~~~IvS~--g~s~~~I~~~l~~-~g~ 198 (332)
.+.||+.++++.++++| .++.++|- +.+..-+...|.. .|+
T Consensus 14 ~~~~~a~e~i~~l~~~g---~~~~~~tN~~~~~~~~~~~~l~~~~g~ 57 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKG---KPVVFLTNNSSRSEEDYAEKLSSLLGV 57 (236)
T ss_pred ccCcCHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34679999999999998 99999983 3355555555655 565
No 307
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=31.16 E-value=1.1e+02 Score=25.30 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=24.0
Q ss_pred hcCCCCcccCCCHHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCHHHHHHHhhc
Q 020024 100 SFMPSEKVENFNYETLHKALEQLSHFEKRANSRVIESGVLKGINLEDIKKAGER 153 (332)
Q Consensus 100 ~~~p~~~~~~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~G~~~~~l~~~~~~ 153 (332)
+++.....+....+.+.+||++ ||++.+||+++.+.
T Consensus 11 ~FL~~p~V~~sp~~~k~~FL~s------------------KGLt~~EI~~al~~ 46 (136)
T PF04695_consen 11 KFLQDPKVRNSPLEKKIAFLES------------------KGLTEEEIDEALGR 46 (136)
T ss_dssp HHHCTTTCCCS-HHHHHHHHHH------------------CT--HHHHHHHHHH
T ss_pred HHhCCcccccCCHHHHHHHHHc------------------CCCCHHHHHHHHHh
Confidence 3444445566788999999873 79999999987553
No 308
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=30.26 E-value=1.5e+02 Score=28.30 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=36.9
Q ss_pred CCCHHHHHHHh----------hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHH
Q 020024 141 GINLEDIKKAG----------ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRAS 192 (332)
Q Consensus 141 G~~~~~l~~~~----------~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~ 192 (332)
+++.+.+.++. ..+.++|.+.++++.+++.| +.+.|+|.|...+.++.+
T Consensus 118 ~v~~~~~~ea~~~~~v~iSl~GEPlL~p~l~eli~~~k~~G---i~~~L~TNG~~~e~l~~L 176 (322)
T PRK13762 118 KVDREKFEEAMEPKHVAISLSGEPTLYPYLPELIEEFHKRG---FTTFLVTNGTRPDVLEKL 176 (322)
T ss_pred CCCHHHhhhccCCCEEEEeCCccccchhhHHHHHHHHHHcC---CCEEEECCCCCHHHHHHH
Confidence 46777777742 24678999999999999998 999999988544444433
No 309
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=30.22 E-value=32 Score=29.32 Aligned_cols=18 Identities=22% Similarity=-0.029 Sum_probs=14.4
Q ss_pred CceEEEEeCCCCcccccc
Q 020024 30 DRLIIFSDFDLTCTIVDS 47 (332)
Q Consensus 30 ~~~lvi~DFD~TiT~~Dt 47 (332)
.-.++++|+|+|++..+.
T Consensus 24 ~v~~vv~D~Dgtl~~~~~ 41 (170)
T TIGR01668 24 GIKGVVLDKDNTLVYPDH 41 (170)
T ss_pred CCCEEEEecCCccccCCC
Confidence 345899999999997654
No 310
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=30.14 E-value=3.7e+02 Score=23.43 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=59.0
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDS 254 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs 254 (332)
..+.|+-.|--...+-..|...|+..+.++=.+..-..+...-.+......|..|...+.+.+...+. .-++-.+-..
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~v~i~~~~~~ 99 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS--DIQVTALKER 99 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC--CCEEEEehhc
Confidence 56777765422555556666668754444433322111110001111222356799888887776553 2344455444
Q ss_pred ccc---hHHhhhcCeeEEEcCC----hhHHHHhHhcCCeeeec
Q 020024 255 VGD---LLCLLEADIGIVIGSS----SSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 255 ~~D---l~~l~~Ad~gvv~~~~----~~L~~~~~~~~~~~~p~ 290 (332)
.++ ...+..+|+-|...++ ..+.++|+++++|++--
T Consensus 100 i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 100 VTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISA 142 (202)
T ss_pred CCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 433 2345668842222222 25778899999988753
No 311
>PRK14851 hypothetical protein; Provisional
Probab=29.54 E-value=7.1e+02 Score=26.48 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=64.0
Q ss_pred CcEEEEccc-cCHHHHHHHHHhcCCCcceEEeeeeE-EcC-ceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEE
Q 020024 175 ANVHVLSYC-WCGDLIRASFSSAGLNALNVHANEFS-FKE-SISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYI 251 (332)
Q Consensus 175 ~~~~IvS~g-~s~~~I~~~l~~~g~~~~~I~aN~l~-~~~-g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyi 251 (332)
..+.|+-.| . +..+-..|...|+..+.|+=.+.. ..| ++..+. ....-|.-|..++.+.+.+.+. .-++..+
T Consensus 44 ~~VlIvG~GGl-Gs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~--~~~dvG~~Kv~v~~~~l~~inP--~~~I~~~ 118 (679)
T PRK14851 44 AKVAIPGMGGV-GGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGA--RVPSFGRPKLAVMKEQALSINP--FLEITPF 118 (679)
T ss_pred CeEEEECcCHH-HHHHHHHHHHhCCCeEEEEcCCEecccccccCcCc--ChhhCCCHHHHHHHHHHHHhCC--CCeEEEE
Confidence 578888765 4 666777777778765444432221 122 111111 1123366799999888877664 3566666
Q ss_pred eCCccc---hHHhhhcCeeEEEc-CC-------hhHHHHhHhcCCeeee
Q 020024 252 GDSVGD---LLCLLEADIGIVIG-SS-------SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 252 GDs~~D---l~~l~~Ad~gvv~~-~~-------~~L~~~~~~~~~~~~p 289 (332)
-+..+. -..+..+|+ |+. -+ ..|.+.|.++++|++-
T Consensus 119 ~~~i~~~n~~~~l~~~Dv--Vid~~D~~~~~~r~~l~~~c~~~~iP~i~ 165 (679)
T PRK14851 119 PAGINADNMDAFLDGVDV--VLDGLDFFQFEIRRTLFNMAREKGIPVIT 165 (679)
T ss_pred ecCCChHHHHHHHhCCCE--EEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 666654 234566884 443 22 1477889999999884
No 312
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=28.59 E-value=33 Score=29.08 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=12.4
Q ss_pred ceEEEEeCCCCcccc
Q 020024 31 RLIIFSDFDLTCTIV 45 (332)
Q Consensus 31 ~~lvi~DFD~TiT~~ 45 (332)
|..+|+|.|+||.-.
T Consensus 1 k~~lvlDLDeTLi~~ 15 (162)
T TIGR02251 1 KKTLVLDLDETLVHS 15 (162)
T ss_pred CcEEEEcCCCCcCCC
Confidence 458999999999953
No 313
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=27.93 E-value=4.1e+02 Score=23.21 Aligned_cols=33 Identities=3% Similarity=0.033 Sum_probs=23.6
Q ss_pred CChh-HHHHHHHHHHcCCCCCcEEEEccccCHHHHHHH
Q 020024 156 LQDG-CTTFFQKVVKNENLNANVHVLSYCWCGDLIRAS 192 (332)
Q Consensus 156 lrpg-~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~ 192 (332)
..|+ +..+|..+.+++ ....|+|-|+ +.+.+..
T Consensus 64 ~~P~~~H~~l~~l~~~~---~~~~iiTqNi-D~L~~~a 97 (222)
T cd00296 64 AKPNPAHRALAELERKG---KLKRIITQNV-DGLHERA 97 (222)
T ss_pred CCCCHHHHHHHHHHHcC---CCceEEecCh-HHHHHHh
Confidence 4555 477788888777 6788999998 6555543
No 314
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.87 E-value=2.1e+02 Score=27.23 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=31.8
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHHhcCC
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGL 198 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~ 198 (332)
..+.++|++.++++.+++.| ..+.|+|-|+ +.+.++... ..|+
T Consensus 62 GEPll~~~~~~ii~~~~~~g---~~~~l~TNG~ll~~e~~~~L~-~~g~ 106 (358)
T TIGR02109 62 GEPLARPDLVELVAHARRLG---LYTNLITSGVGLTEARLDALA-DAGL 106 (358)
T ss_pred ccccccccHHHHHHHHHHcC---CeEEEEeCCccCCHHHHHHHH-hCCC
Confidence 46778999999999999888 8888888773 345555443 3454
No 315
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=27.16 E-value=2.2e+02 Score=26.25 Aligned_cols=121 Identities=11% Similarity=0.149 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEcc---ccCHHHHHHHHHhcCCCcceEEeeeeEEc--Cceec-c--cccccCCCCcchHHH
Q 020024 161 TTFFQKVVKNENLNANVHVLSY---CWCGDLIRASFSSAGLNALNVHANEFSFK--ESIST-G--EIIEKVESPIDKVQA 232 (332)
Q Consensus 161 ~e~l~~l~~~g~~~~~~~IvS~---g~s~~~I~~~l~~~g~~~~~I~aN~l~~~--~g~~t-G--~~~~~~~~~~~K~~~ 232 (332)
.|.++...+.| -.++++|+ || ++....+...+. .+.++.-...-. +.... . .....+. .+...
T Consensus 110 ~e~l~~a~~~g---~gvIl~t~H~Gnw--E~~~~~l~~~~~-~~~~i~~~~~n~~~~~~~~~~R~~~g~~~i---~~~~~ 180 (295)
T PF03279_consen 110 EEHLEAALAEG---RGVILLTGHFGNW--ELAGRALARRGP-PVAVIYRPQKNPYIDRLLNKLRERFGIELI---PKGEG 180 (295)
T ss_pred HHHHHHHHhcC---CCCEEeCcCcChH--HHHHHHHHhhCC-ceEEEecCCccHhHHHHHHHHHHhcCCeEe---cchhh
Confidence 45566666666 68889986 66 677777776664 345554443210 11100 0 0111111 12222
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe-eEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI-GIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~-gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
+++++..... +.-+++.+|-..--.-...++. |--..-......+|.+.+.|++|...
T Consensus 181 ~~~~~~~Lk~--g~~v~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~ 239 (295)
T PF03279_consen 181 IRELIRALKE--GGIVGLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFA 239 (295)
T ss_pred HHHHHHHhcc--CCEEEEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEE
Confidence 4444433322 3577799995321110111221 22222335688999999999999864
No 316
>PRK08223 hypothetical protein; Validated
Probab=26.36 E-value=5.5e+02 Score=24.14 Aligned_cols=110 Identities=7% Similarity=0.003 Sum_probs=60.1
Q ss_pred CcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceeccccc-ccCCCCcchHHHHHHHHHHhCCCCCceEEEEeC
Q 020024 175 ANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEII-EKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGD 253 (332)
Q Consensus 175 ~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~-~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGD 253 (332)
..+.||=+|--...+-..|...|+..+.++=.+..-..+ +.-++. ....-|..|.+.+.+-+.+.+. .-++..+-.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SN-LnRQ~l~~~~diG~~Kve~a~~~l~~iNP--~v~V~~~~~ 104 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRN-FNRQAGAMMSTLGRPKAEVLAEMVRDINP--ELEIRAFPE 104 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhc-cccccCcChhHCCCcHHHHHHHHHHHHCC--CCEEEEEec
Confidence 577788764225566666777787544443322211111 111111 2223466799988888877664 234544433
Q ss_pred ---CccchHHhhhcCeeEEEcCC--------hhHHHHhHhcCCeeee
Q 020024 254 ---SVGDLLCLLEADIGIVIGSS--------SSLRRVGSQFGVTFIP 289 (332)
Q Consensus 254 ---s~~Dl~~l~~Ad~gvv~~~~--------~~L~~~~~~~~~~~~p 289 (332)
..|....+..+| +|+..- -.+-+.|.++++|++-
T Consensus 105 ~l~~~n~~~ll~~~D--lVvD~~D~~~~~~r~~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 105 GIGKENADAFLDGVD--VYVDGLDFFEFDARRLVFAACQQRGIPALT 149 (287)
T ss_pred ccCccCHHHHHhCCC--EEEECCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 223345566788 444322 2366789999998874
No 317
>PTZ00445 p36-lilke protein; Provisional
Probab=26.32 E-value=29 Score=31.26 Aligned_cols=16 Identities=50% Similarity=0.555 Sum_probs=13.3
Q ss_pred eEEEEeCCCCcccccc
Q 020024 32 LIIFSDFDLTCTIVDS 47 (332)
Q Consensus 32 ~lvi~DFD~TiT~~Dt 47 (332)
.+|++|||-||+...|
T Consensus 44 k~Va~D~DnTlI~~Hs 59 (219)
T PTZ00445 44 KVIASDFDLTMITKHS 59 (219)
T ss_pred eEEEecchhhhhhhhc
Confidence 5999999999998444
No 318
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=26.02 E-value=1.6e+02 Score=23.93 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=26.4
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEcc--ccC---HHHHHHHHHhcCC
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSY--CWC---GDLIRASFSSAGL 198 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~--g~s---~~~I~~~l~~~g~ 198 (332)
=|||+.++++.++... +.++||.. -++ .+++...+..+|+
T Consensus 47 ~Rp~l~~ll~~i~~g~---~d~lvV~~ldRl~R~~~d~~~~~l~~~gv 91 (134)
T cd03769 47 KRKGLLKLLEDVLAGK---VERVVITYKDRLARFGFELLEELFKAYGV 91 (134)
T ss_pred CCHHHHHHHHHHHcCC---CCEEEEEeccHHHHhhHHHHHHHHHHCCC
Confidence 4999999999988754 67777753 111 3455555565564
No 319
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=25.93 E-value=1.5e+02 Score=23.25 Aligned_cols=43 Identities=7% Similarity=0.023 Sum_probs=32.6
Q ss_pred HhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhc
Q 020024 150 AGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSA 196 (332)
Q Consensus 150 ~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~ 196 (332)
..+.=...=|++..++.++.-. ..++||.+|. ..-++.-++.+
T Consensus 14 avkTGkvilG~k~tiK~lk~gk---aKliiiAsN~-P~~~k~~ieyY 56 (100)
T COG1911 14 AVKTGKVILGSKRTIKSLKLGK---AKLIIIASNC-PKELKEDIEYY 56 (100)
T ss_pred HHhcCCEEEehHHHHHHHHcCC---CcEEEEecCC-CHHHHHHHHHH
Confidence 3344455568999999999755 8999999996 77888777665
No 320
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=25.25 E-value=2.7e+02 Score=26.85 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=32.2
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEcccc--CHHHHHHHHHhcCC
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCW--CGDLIRASFSSAGL 198 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~--s~~~I~~~l~~~g~ 198 (332)
..+.++|.+.++++.+++.| ..+.|+|-|+ +.+.++.+ ...|+
T Consensus 71 GEPll~~~~~~il~~~~~~g---~~~~i~TNG~ll~~~~~~~L-~~~g~ 115 (378)
T PRK05301 71 GEPLLRKDLEELVAHARELG---LYTNLITSGVGLTEARLAAL-KDAGL 115 (378)
T ss_pred CccCCchhHHHHHHHHHHcC---CcEEEECCCccCCHHHHHHH-HHcCC
Confidence 46788999999999999888 8888898774 44555543 34454
No 321
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=25.22 E-value=2.4e+02 Score=27.73 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=31.0
Q ss_pred CcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCeeEEEcCChhHHHHhHhcCCeeeecCc
Q 020024 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADIGIVIGSSSSLRRVGSQFGVTFIPLYP 292 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~gvv~~~~~~L~~~~~~~~~~~~p~~~ 292 (332)
-.+|....+++..++|.. -.-|.||||.-- ..-|++.+|||.++..
T Consensus 407 kiGKescFerI~~RFg~K--~~yvvIgdG~ee-------------------e~aAK~ln~PfwrI~~ 452 (468)
T KOG3107|consen 407 KIGKESCFERIQSRFGRK--VVYVVIGDGVEE-------------------EQAAKALNMPFWRISS 452 (468)
T ss_pred hccHHHHHHHHHHHhCCc--eEEEEecCcHHH-------------------HHHHHhhCCceEeecc
Confidence 347999999999988752 355678887422 2234557777777764
No 322
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=24.43 E-value=1.2e+02 Score=29.83 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEee
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHAN 206 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN 206 (332)
++=+.|++.| .+++|..+.- .+.|..+++.+++ .+|++|
T Consensus 65 ~L~~~L~~~g---~~L~v~~G~~-~~vl~~L~~~~~~--~~V~~~ 103 (429)
T TIGR02765 65 DLRTSLRKLG---SDLLVRSGKP-EDVLPELIKELGV--RTVFLH 103 (429)
T ss_pred HHHHHHHHcC---CCeEEEeCCH-HHHHHHHHHHhCC--CEEEEe
Confidence 3333444444 5555554432 4444444444433 344444
No 323
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=2.2e+02 Score=24.50 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCC
Q 020024 156 LQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGL 198 (332)
Q Consensus 156 lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~ 198 (332)
=-||+.+-.+.++.+| . ..+++||+|- ...+..+.+.+|.
T Consensus 63 HvPGyi~~a~elksKG-V-d~iicvSVnD-pFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 63 HVPGYIEKADELKSKG-V-DEIICVSVND-PFVMKAWAKSLGA 102 (171)
T ss_pred cCchHHHHHHHHHhcC-C-cEEEEEecCc-HHHHHHHHhhcCc
Confidence 3589999999999987 1 4578899984 7777778777764
No 324
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=23.02 E-value=4.1e+02 Score=24.40 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=62.1
Q ss_pred CCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchH--H
Q 020024 154 LSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKV--Q 231 (332)
Q Consensus 154 i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~--~ 231 (332)
-.+.+.....++.-+..| .+++|-|.| |-.--+.... +. ...|-. ....|.|+..+ | -|. +
T Consensus 122 ~~v~aDv~~a~e~w~~~g---~~vyIYSSg-sv~AqKllfg-~s-----~~gdl~----~y~~gyfDt~i--G-~K~e~~ 184 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEG---VRVYIYSSG-SVAAQKLLFG-YS-----DAGDLR----KYISGYFDTTI--G-LKVESQ 184 (254)
T ss_pred ccccchhHHHHHHHhhcC---ceEEEEcCC-cHHHHHHHHc-cc-----CcchHH----HHhhhhhhccc--c-ceehhH
Confidence 378888888888888888 999999998 3322221111 10 011111 12445565321 1 121 2
Q ss_pred HHHHHHHHhCCCCCceEEEEeCCccchHHhhhcCe--eEEEcCC
Q 020024 232 AFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEADI--GIVIGSS 273 (332)
Q Consensus 232 ~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad~--gvv~~~~ 273 (332)
...++....+. ++.++.+.-|=..-..++..||+ +++.+|+
T Consensus 185 sy~~I~~~Ig~-s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPg 227 (254)
T KOG2630|consen 185 SYKKIGHLIGK-SPREILFLTDVPREAAAARKAGLQAGLVSRPG 227 (254)
T ss_pred HHHHHHHHhCC-ChhheEEeccChHHHHHHHhcccceeeeecCC
Confidence 33334333444 35789999999999999999998 6777766
No 325
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=22.87 E-value=6.6e+02 Score=23.85 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=39.1
Q ss_pred CcchHHHHHHHHHHhCCCCCceEEEEeCCcc----chHHhhhcCeeEEEcCC-----hhHHHHhHhcCCeeeec
Q 020024 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVG----DLLCLLEADIGIVIGSS-----SSLRRVGSQFGVTFIPL 290 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~----Dl~~l~~Ad~gvv~~~~-----~~L~~~~~~~~~~~~p~ 290 (332)
|..|..++.+.+.+.+. .-++..+-+..+ |...+...|+ |+.+.+ ..+-++|+++++|++--
T Consensus 51 Gk~Kaevaa~~l~~lNp--~v~V~~~~~~i~~~~~~~~f~~~~Dv-Vv~a~Dn~~ar~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 51 GKSKAQVAKEAVLSFNP--NVKIVAYHANIKDPDFNVEFFKQFDL-VFNALDNLAARRHVNKMCLAADVPLIES 121 (312)
T ss_pred CcHHHHHHHHHHHHHCC--CCeEEEEeccCCCccchHHHHhcCCE-EEECCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 55788888888777654 234544433343 4466777884 333322 25778999999988853
No 326
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=22.77 E-value=2.2e+02 Score=24.24 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=32.5
Q ss_pred hcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHH
Q 020024 152 ERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFS 194 (332)
Q Consensus 152 ~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~ 194 (332)
..+.+++.+.++++.+++.| ..+.|.|.|...+.+..+++
T Consensus 71 GEPll~~~l~~li~~~~~~g---~~v~i~TNg~~~~~l~~l~~ 110 (191)
T TIGR02495 71 GEPTLQAGLPDFLRKVRELG---FEVKLDTNGSNPRVLEELLE 110 (191)
T ss_pred CcccCcHhHHHHHHHHHHCC---CeEEEEeCCCCHHHHHHHHh
Confidence 45778888999999999988 89999999876666666554
No 327
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=22.58 E-value=3e+02 Score=26.01 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCCcceEEeeeeEEcCceecccccccCCCCcchHHHHHHHHHHhCCCCCceEEEEeCCccchHHhhhcC-
Q 020024 187 DLIRASFSSAGLNALNVHANEFSFKESISTGEIIEKVESPIDKVQAFNNTLEKYGTDRKNLSVYIGDSVGDLLCLLEAD- 265 (332)
Q Consensus 187 ~~I~~~l~~~g~~~~~I~aN~l~~~~g~~tG~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~Ad- 265 (332)
.||.+.|...|+ .+++.. +.+-..|.......-+..++...++.++...+.. ..++++|-|.+==.+|..|-
T Consensus 52 kYi~~~l~~~~i---R~I~iN--~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~--~~~i~~gHSrGcenal~la~~ 124 (297)
T PF06342_consen 52 KYIRPPLDEAGI---RFIGIN--YPGFGFTPGYPDQQYTNEERQNFVNALLDELGIK--GKLIFLGHSRGCENALQLAVT 124 (297)
T ss_pred hhhhhHHHHcCe---EEEEeC--CCCCCCCCCCcccccChHHHHHHHHHHHHHcCCC--CceEEEEeccchHHHHHHHhc
Confidence 588888888774 555543 3331222222234566678999999999988874 78999999998877777653
Q ss_pred ---eeEEEcCC
Q 020024 266 ---IGIVIGSS 273 (332)
Q Consensus 266 ---~gvv~~~~ 273 (332)
+|+++-++
T Consensus 125 ~~~~g~~lin~ 135 (297)
T PF06342_consen 125 HPLHGLVLINP 135 (297)
T ss_pred CccceEEEecC
Confidence 36555444
No 328
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.11 E-value=1e+02 Score=28.80 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=19.8
Q ss_pred CcchHHHHHHHHHHhCCCCCceEEEEeCCcc
Q 020024 226 PIDKVQAFNNTLEKYGTDRKNLSVYIGDSVG 256 (332)
Q Consensus 226 ~~~K~~~l~~~~~~~~~~~~~~viyiGDs~~ 256 (332)
|.+=..++++++.... ..++||+||+.+
T Consensus 14 GVGGLsVlrei~~~LP---~e~~iY~~D~a~ 41 (269)
T COG0796 14 GVGGLSVLREIRRQLP---DEDIIYVGDTAR 41 (269)
T ss_pred CCCcHHHHHHHHHHCC---CCcEEEEecCCC
Confidence 4445667777776543 478999999975
No 329
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=21.80 E-value=1.6e+02 Score=27.77 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=28.0
Q ss_pred CChhHHHHHHHHHHc----CCCCCcEEEEccc--cCHH-HHHHHHHhcCC
Q 020024 156 LQDGCTTFFQKVVKN----ENLNANVHVLSYC--WCGD-LIRASFSSAGL 198 (332)
Q Consensus 156 lrpg~~e~l~~l~~~----g~~~~~~~IvS~g--~s~~-~I~~~l~~~g~ 198 (332)
+-||+.++++.++.+ | .++.++|-+ .+.. ..+...+.+|+
T Consensus 17 ~i~ga~eal~~L~~~~~~~g---~~~~flTNn~g~s~~~~~~~l~~~lG~ 63 (321)
T TIGR01456 17 PIAGASDALRRLNRNQGQLK---IPYIFLTNGGGFSERARAEEISSLLGV 63 (321)
T ss_pred ccHHHHHHHHHHhccccccC---CCEEEEecCCCCCHHHHHHHHHHHcCC
Confidence 467888999999987 7 899999943 3333 34444466775
No 330
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=21.66 E-value=57 Score=22.87 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=10.4
Q ss_pred ChhHHHHhHhcCCe
Q 020024 273 SSSLRRVGSQFGVT 286 (332)
Q Consensus 273 ~~~L~~~~~~~~~~ 286 (332)
++.+++||+++||=
T Consensus 29 ~~eV~~YC~~~GWI 42 (57)
T PF08727_consen 29 SPEVREYCEEQGWI 42 (57)
T ss_dssp -HHHHHHHHHHT--
T ss_pred CHHHHHHHHHCCcc
Confidence 57899999999993
No 331
>KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism]
Probab=21.63 E-value=2.1e+02 Score=26.66 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=38.9
Q ss_pred ceEEEEeCCccchHHhh--hcCeeE--EEcCC----------hhHHHHhHhcCCeeeecCchhhhhhhhhhcCCCCCccc
Q 020024 246 NLSVYIGDSVGDLLCLL--EADIGI--VIGSS----------SSLRRVGSQFGVTFIPLYPGLVKKQKEYTEGSSSNWKE 311 (332)
Q Consensus 246 ~~viyiGDs~~Dl~~l~--~Ad~gv--v~~~~----------~~L~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 311 (332)
-++.+|||+-|=+.-+. .+-+|+ .++.+ +...+++++||-+|. ++.+ +.....
T Consensus 191 lkvawiGD~NNvlhs~mia~ak~gih~s~atPkg~e~d~div~~akq~a~eNgsk~e-ltnD------------p~eA~~ 257 (346)
T KOG1504|consen 191 LKVAWIGDGNNVLHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKAKQAAEENGSKFE-LTND------------PLEAVI 257 (346)
T ss_pred cEEEEEccccHHHHHHHHHhhhcceEEEecCCCCCCcchHHHHHHHHHHHhcCCEEE-EecC------------hHHhhc
Confidence 58999999987655333 344443 22222 355677777886654 2222 222223
Q ss_pred cCCEEEEeCCHHHHH
Q 020024 312 KSGILYTVSSWAEVH 326 (332)
Q Consensus 312 ~~~~ly~~~~W~~i~ 326 (332)
..++||+ +.|-...
T Consensus 258 ~anvlvt-DtwiSMG 271 (346)
T KOG1504|consen 258 GANVLVT-DTWISMG 271 (346)
T ss_pred CCcEEEE-ehhhhcc
Confidence 5568888 9996543
No 332
>PRK07206 hypothetical protein; Provisional
Probab=21.35 E-value=7.5e+02 Score=23.88 Aligned_cols=56 Identities=4% Similarity=-0.041 Sum_probs=32.7
Q ss_pred hhHHHHhHhcCCeeeecCch-hhhhhhhhhcC----CCCCccc-----cCCEEEEeCCHHHHHHhH
Q 020024 274 SSLRRVGSQFGVTFIPLYPG-LVKKQKEYTEG----SSSNWKE-----KSGILYTVSSWAEVHAFI 329 (332)
Q Consensus 274 ~~L~~~~~~~~~~~~p~~~~-~~~~~~~~~~~----~~~~~~~-----~~~~ly~~~~W~~i~~~l 329 (332)
..+++.+++.|++.-++... -..++.++... +.|...| .+-.++.|.+.+|+.+.+
T Consensus 110 ~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~ 175 (416)
T PRK07206 110 AEMINALAEAGLPAARQINTADWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAF 175 (416)
T ss_pred HHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHH
Confidence 46677889999987665431 11222222211 1255555 222689999999987654
No 333
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=64 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCceEEEEeCCccchHHhhh
Q 020024 233 FNNTLEKYGTDRKNLSVYIGDSVGDLLCLLE 263 (332)
Q Consensus 233 l~~~~~~~~~~~~~~viyiGDs~~Dl~~l~~ 263 (332)
++++++.+| .++|+||-.-|+.|++.
T Consensus 7 VqQlLK~~G-----~ivyfg~r~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFG-----IIVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHCC-----eeeecCCHHHHHHHHHH
Confidence 456777654 69999999999999875
No 334
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=20.86 E-value=1.8e+02 Score=26.63 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCCcceEEeeeeEEc
Q 020024 162 TFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLNALNVHANEFSFK 211 (332)
Q Consensus 162 e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~~~~I~aN~l~~~ 211 (332)
--++.|.+.| . .+++||..|+-.++++..+.++++ +.+|+.|..--.
T Consensus 36 ~~i~~L~~~g-i-~e~vvV~~g~~~~lve~~l~~~~~-~~~iv~N~~y~k 82 (239)
T COG1213 36 RTIENLAKAG-I-TEFVVVTNGYRADLVEEFLKKYPF-NAKIVINSDYEK 82 (239)
T ss_pred HHHHHHHHcC-C-ceEEEEeccchHHHHHHHHhcCCc-ceEEEeCCCccc
Confidence 4466677766 1 478888878779999999998876 468888876543
No 335
>PRK07475 hypothetical protein; Provisional
Probab=20.05 E-value=1.2e+02 Score=27.63 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=41.6
Q ss_pred hhhcCCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCCCcEEEEccccCHHHHHHHHHhcCCC
Q 020024 136 SGVLKGINLEDIKKAGERLSLQDGCTTFFQKVVKNENLNANVHVLSYCWCGDLIRASFSSAGLN 199 (332)
Q Consensus 136 ~~~f~G~~~~~l~~~~~~i~lrpg~~e~l~~l~~~g~~~~~~~IvS~g~s~~~I~~~l~~~g~~ 199 (332)
+++..|.+.+.+..-. ...+.+.+.+-.+.|.+.| ..+++++.||...|...+-+..+++
T Consensus 44 ~~~v~g~~~~~~~~~~-~~~~~~~l~~aa~~L~~~G---~d~I~~~Cgt~~~~~~~l~~~~~VP 103 (245)
T PRK07475 44 YKVVRGATPERVVEGD-DPSLLDAFVAAARELEAEG---VRAITTSCGFLALFQRELAAALGVP 103 (245)
T ss_pred EEeeCCCCHHHHhcCC-CccHHHHHHHHHHHHHHcC---CCEEEechHHHHHHHHHHHHHcCCC
Confidence 4666788877776542 3446788888899999888 9999999998444444443344543
Done!