Query 020025
Match_columns 332
No_of_seqs 154 out of 1535
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 8.3E-65 1.8E-69 452.7 28.4 267 15-309 2-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 4.1E-62 8.8E-67 435.4 29.5 281 18-309 6-289 (300)
3 KOG1575 Voltage-gated shaker-l 100.0 2.3E-59 5.1E-64 425.1 28.2 286 7-314 3-334 (336)
4 COG0667 Tas Predicted oxidored 100.0 5.7E-59 1.2E-63 430.2 29.1 268 16-306 1-310 (316)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.9E-57 4.2E-62 412.7 30.7 254 26-308 1-255 (267)
6 TIGR01293 Kv_beta voltage-depe 100.0 3.5E-56 7.6E-61 414.1 28.2 264 18-303 1-316 (317)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 1.1E-55 2.3E-60 415.2 30.4 274 13-306 10-334 (346)
8 PRK10625 tas putative aldo-ket 100.0 1.1E-55 2.3E-60 415.6 29.8 281 16-305 1-339 (346)
9 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2E-54 4.4E-59 394.2 30.1 261 18-309 6-266 (275)
10 PLN02587 L-galactose dehydroge 100.0 2.7E-54 5.8E-59 401.1 28.1 270 18-306 1-301 (314)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 7E-54 1.5E-58 393.1 29.5 264 18-303 1-285 (285)
12 PRK10376 putative oxidoreducta 100.0 7.5E-52 1.6E-56 380.3 28.8 265 12-306 3-289 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.4E-52 9.5E-57 380.9 23.8 254 30-304 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 5.1E-50 1.1E-54 367.8 22.0 251 25-301 2-278 (292)
15 COG4989 Predicted oxidoreducta 100.0 1.2E-48 2.6E-53 334.9 20.0 268 16-304 1-292 (298)
16 COG1453 Predicted oxidoreducta 100.0 1.6E-47 3.5E-52 345.1 20.7 279 16-320 1-303 (391)
17 KOG1576 Predicted oxidoreducta 100.0 8.1E-45 1.7E-49 313.5 19.1 282 13-314 19-332 (342)
18 KOG3023 Glutamate-cysteine lig 98.5 2.9E-07 6.2E-12 79.6 6.9 74 153-226 154-228 (285)
19 TIGR00190 thiC thiamine biosyn 87.2 29 0.00062 33.3 21.4 138 44-227 76-225 (423)
20 cd03319 L-Ala-DL-Glu_epimerase 85.7 29 0.00064 32.0 16.1 150 44-229 135-290 (316)
21 PF07021 MetW: Methionine bios 85.6 8.7 0.00019 33.0 9.3 105 108-229 59-170 (193)
22 TIGR00381 cdhD CO dehydrogenas 85.2 20 0.00043 34.2 12.3 128 107-259 128-271 (389)
23 COG0635 HemN Coproporphyrinoge 83.9 8 0.00017 37.5 9.5 77 100-180 197-276 (416)
24 PRK10558 alpha-dehydro-beta-de 82.9 14 0.00031 33.2 10.2 101 161-290 10-115 (256)
25 PRK08392 hypothetical protein; 82.6 32 0.00069 29.9 17.5 186 45-259 14-209 (215)
26 PRK13352 thiamine biosynthesis 82.1 50 0.0011 31.8 21.4 89 103-227 139-228 (431)
27 PRK10128 2-keto-3-deoxy-L-rham 81.2 21 0.00045 32.4 10.6 103 161-291 9-115 (267)
28 TIGR00216 ispH_lytB (E)-4-hydr 80.7 11 0.00024 34.4 8.6 115 160-285 146-273 (280)
29 PRK04452 acetyl-CoA decarbonyl 78.9 19 0.00041 33.5 9.6 118 115-259 83-206 (319)
30 TIGR03239 GarL 2-dehydro-3-deo 77.3 26 0.00056 31.4 9.9 96 166-290 8-108 (249)
31 PRK01045 ispH 4-hydroxy-3-meth 76.8 17 0.00038 33.5 8.7 107 168-285 156-275 (298)
32 COG1748 LYS9 Saccharopine dehy 76.7 17 0.00037 34.9 8.9 81 44-136 78-159 (389)
33 PRK07535 methyltetrahydrofolat 76.7 35 0.00076 30.8 10.6 102 105-226 23-124 (261)
34 PF01964 ThiC: ThiC family; I 74.9 59 0.0013 31.2 11.7 140 44-229 75-226 (420)
35 PF02401 LYTB: LytB protein; 74.8 8.4 0.00018 35.2 6.1 108 167-285 154-274 (281)
36 PRK12360 4-hydroxy-3-methylbut 74.0 23 0.0005 32.4 8.7 107 168-285 157-274 (281)
37 PRK08609 hypothetical protein; 73.4 1.1E+02 0.0024 31.1 18.0 184 46-260 350-554 (570)
38 PRK00912 ribonuclease P protei 72.8 67 0.0014 28.3 13.6 172 44-262 15-205 (237)
39 COG0761 lytB 4-Hydroxy-3-methy 69.0 27 0.00059 31.9 7.8 80 195-285 191-277 (294)
40 TIGR01278 DPOR_BchB light-inde 68.9 1.2E+02 0.0026 30.3 13.3 107 68-193 67-190 (511)
41 TIGR02026 BchE magnesium-proto 67.1 73 0.0016 31.6 11.3 128 149-287 219-361 (497)
42 cd00423 Pterin_binding Pterin 66.8 96 0.0021 27.8 12.3 108 104-228 21-130 (258)
43 cd00739 DHPS DHPS subgroup of 66.6 71 0.0015 28.7 10.2 106 105-226 22-128 (257)
44 PRK07945 hypothetical protein; 65.4 1.2E+02 0.0026 28.4 17.3 106 44-175 110-227 (335)
45 COG1140 NarY Nitrate reductase 65.3 2.7 5.9E-05 39.5 0.8 53 167-220 263-317 (513)
46 TIGR02311 HpaI 2,4-dihydroxyhe 65.2 75 0.0016 28.4 10.0 98 163-290 5-108 (249)
47 cd01965 Nitrogenase_MoFe_beta_ 64.7 1.4E+02 0.003 28.9 14.1 110 67-195 62-186 (428)
48 cd00740 MeTr MeTr subgroup of 64.1 1.1E+02 0.0023 27.5 10.8 107 104-229 23-130 (252)
49 cd03316 MR_like Mandelate race 61.2 1.4E+02 0.0031 27.9 17.8 147 44-225 140-298 (357)
50 PF15221 LEP503: Lens epitheli 61.2 5.9 0.00013 26.3 1.6 33 5-37 4-36 (61)
51 PRK00087 4-hydroxy-3-methylbut 60.1 42 0.00091 34.6 8.4 112 162-284 148-270 (647)
52 PRK07094 biotin synthase; Prov 59.6 1.1E+02 0.0024 28.2 10.6 122 152-288 70-204 (323)
53 PRK13796 GTPase YqeH; Provisio 59.3 1.6E+02 0.0035 27.9 12.4 118 44-186 56-179 (365)
54 cd00308 enolase_like Enolase-s 58.8 90 0.002 27.2 9.3 70 158-229 134-207 (229)
55 PRK09490 metH B12-dependent me 58.8 3E+02 0.0066 30.8 16.8 57 173-229 434-491 (1229)
56 cd03174 DRE_TIM_metallolyase D 57.4 65 0.0014 28.6 8.4 102 105-225 17-135 (265)
57 cd01973 Nitrogenase_VFe_beta_l 56.0 2.1E+02 0.0045 28.1 15.0 113 64-194 64-191 (454)
58 PF03102 NeuB: NeuB family; I 55.2 49 0.0011 29.5 7.0 116 44-185 55-187 (241)
59 KOG0259 Tyrosine aminotransfer 54.8 1.4E+02 0.0031 28.6 10.0 49 44-99 80-135 (447)
60 COG4152 ABC-type uncharacteriz 53.9 92 0.002 28.2 8.2 73 103-189 101-199 (300)
61 cd03322 rpsA The starvation se 53.1 2E+02 0.0044 27.1 15.4 144 44-227 127-274 (361)
62 PRK10550 tRNA-dihydrouridine s 53.0 1.9E+02 0.0042 26.8 14.4 134 44-199 74-223 (312)
63 COG2256 MGS1 ATPase related to 52.9 1.1E+02 0.0024 29.5 9.1 100 49-179 37-142 (436)
64 PRK05283 deoxyribose-phosphate 51.7 1.3E+02 0.0028 27.1 9.1 86 29-126 134-227 (257)
65 TIGR01228 hutU urocanate hydra 51.1 47 0.001 32.7 6.4 127 50-201 108-258 (545)
66 PRK05414 urocanate hydratase; 50.4 50 0.0011 32.7 6.5 127 50-201 117-267 (556)
67 PF01904 DUF72: Protein of unk 50.3 1.3E+02 0.0029 26.4 9.0 120 59-224 19-148 (230)
68 TIGR01496 DHPS dihydropteroate 50.1 1.6E+02 0.0035 26.4 9.6 100 105-226 21-126 (257)
69 PLN02489 homocysteine S-methyl 50.1 2.2E+02 0.0048 26.7 19.3 216 44-290 54-333 (335)
70 cd03315 MLE_like Muconate lact 50.1 1.9E+02 0.0041 25.8 16.1 151 44-229 86-242 (265)
71 PRK05692 hydroxymethylglutaryl 49.8 2.1E+02 0.0045 26.2 10.6 98 109-223 27-138 (287)
72 COG4943 Predicted signal trans 49.5 2.5E+02 0.0054 27.8 11.0 119 89-224 350-477 (524)
73 cd07944 DRE_TIM_HOA_like 4-hyd 48.7 1.7E+02 0.0037 26.3 9.6 110 103-224 16-128 (266)
74 COG2069 CdhD CO dehydrogenase/ 45.5 2.5E+02 0.0055 26.0 11.9 101 115-229 158-262 (403)
75 COG0042 tRNA-dihydrouridine sy 45.4 2.6E+02 0.0056 26.1 12.6 129 41-193 76-223 (323)
76 cd03318 MLE Muconate Lactonizi 44.9 1.3E+02 0.0029 28.2 8.7 65 158-224 228-296 (365)
77 PF11242 DUF2774: Protein of u 44.4 31 0.00067 23.7 3.0 23 244-266 15-37 (63)
78 COG1149 MinD superfamily P-loo 43.7 51 0.0011 30.0 5.1 50 178-229 201-250 (284)
79 PLN02746 hydroxymethylglutaryl 43.2 2.9E+02 0.0064 26.1 11.2 100 108-224 68-181 (347)
80 COG4555 NatA ABC-type Na+ tran 43.0 1E+02 0.0022 27.1 6.6 52 123-188 150-201 (245)
81 COG2185 Sbm Methylmalonyl-CoA 42.9 1.1E+02 0.0025 24.9 6.6 71 172-253 19-91 (143)
82 PRK00164 moaA molybdenum cofac 42.7 2.8E+02 0.006 25.6 16.0 159 44-222 51-227 (331)
83 COG1031 Uncharacterized Fe-S o 42.5 1.6E+02 0.0035 28.9 8.5 103 44-183 217-326 (560)
84 PRK06361 hypothetical protein; 42.4 2.2E+02 0.0047 24.4 17.2 185 44-264 9-201 (212)
85 cd02930 DCR_FMN 2,4-dienoyl-Co 42.4 3E+02 0.0064 25.9 13.9 92 90-193 202-301 (353)
86 TIGR03700 mena_SCO4494 putativ 41.9 3E+02 0.0065 25.8 12.4 139 105-287 80-225 (351)
87 PRK14461 ribosomal RNA large s 41.8 2E+02 0.0043 27.5 9.0 98 127-229 231-352 (371)
88 TIGR00048 radical SAM enzyme, 41.6 3.1E+02 0.0067 25.9 10.5 77 153-229 240-333 (355)
89 COG1751 Uncharacterized conser 41.5 88 0.0019 25.8 5.7 72 44-123 13-85 (186)
90 TIGR00289 conserved hypothetic 41.5 2.5E+02 0.0054 24.7 9.7 113 180-306 47-169 (222)
91 PRK15072 bifunctional D-altron 41.3 2.2E+02 0.0048 27.3 9.7 69 157-227 245-317 (404)
92 KOG1576 Predicted oxidoreducta 41.0 2.2E+02 0.0048 26.1 8.6 135 44-221 119-270 (342)
93 TIGR01928 menC_lowGC/arch o-su 41.0 1E+02 0.0022 28.6 7.1 72 156-229 210-285 (324)
94 cd02801 DUS_like_FMN Dihydrour 40.5 2.4E+02 0.0052 24.3 10.0 126 44-192 66-207 (231)
95 TIGR00126 deoC deoxyribose-pho 40.3 2.3E+02 0.005 24.7 8.7 72 44-124 131-205 (211)
96 cd03327 MR_like_2 Mandelate ra 39.7 1.9E+02 0.0041 27.0 8.7 66 157-224 210-279 (341)
97 KOG0369 Pyruvate carboxylase [ 39.5 3.5E+02 0.0077 28.1 10.6 148 44-229 42-195 (1176)
98 COG2874 FlaH Predicted ATPases 39.5 1.9E+02 0.0041 25.6 7.8 141 19-179 19-169 (235)
99 cd03323 D-glucarate_dehydratas 39.0 1.5E+02 0.0033 28.4 8.1 69 157-227 249-321 (395)
100 PRK00208 thiG thiazole synthas 38.9 2.9E+02 0.0063 24.8 17.9 128 29-189 11-143 (250)
101 TIGR02534 mucon_cyclo muconate 38.9 1.7E+02 0.0036 27.7 8.3 68 158-227 227-298 (368)
102 KOG0059 Lipid exporter ABCA1 a 38.8 1.1E+02 0.0024 32.9 7.7 72 106-191 672-769 (885)
103 PRK14017 galactonate dehydrata 38.1 1.7E+02 0.0036 27.9 8.2 67 158-226 217-287 (382)
104 COG2185 Sbm Methylmalonyl-CoA 38.1 2.2E+02 0.0048 23.2 12.0 110 44-188 25-135 (143)
105 COG2200 Rtn c-di-GMP phosphodi 37.6 1.8E+02 0.0039 26.0 7.9 131 71-225 69-213 (256)
106 CHL00076 chlB photochlorophyll 37.3 4.4E+02 0.0094 26.4 13.7 143 68-229 67-249 (513)
107 KOG0023 Alcohol dehydrogenase, 37.3 2.4E+02 0.0053 26.5 8.5 148 14-221 172-324 (360)
108 cd04734 OYE_like_3_FMN Old yel 37.0 3.6E+02 0.0078 25.3 13.9 36 158-193 274-310 (343)
109 PF03851 UvdE: UV-endonuclease 36.6 1.9E+02 0.004 26.4 7.7 80 45-134 45-154 (275)
110 cd07943 DRE_TIM_HOA 4-hydroxy- 36.1 2.2E+02 0.0048 25.5 8.3 104 108-224 22-131 (263)
111 cd07948 DRE_TIM_HCS Saccharomy 35.9 3.3E+02 0.0071 24.5 9.7 95 109-225 23-132 (262)
112 cd04728 ThiG Thiazole synthase 35.8 3.3E+02 0.0071 24.5 16.3 128 29-189 10-143 (248)
113 PRK14459 ribosomal RNA large s 35.5 2.1E+02 0.0046 27.3 8.3 96 126-229 240-359 (373)
114 PRK06740 histidinol-phosphatas 35.4 3.8E+02 0.0082 25.1 11.5 61 111-174 156-220 (331)
115 cd03325 D-galactonate_dehydrat 35.4 3.4E+02 0.0073 25.5 9.7 67 157-225 215-285 (352)
116 COG2102 Predicted ATPases of P 35.3 1.1E+02 0.0023 27.0 5.7 94 153-257 74-177 (223)
117 PF03102 NeuB: NeuB family; I 35.1 1.3E+02 0.0028 26.8 6.5 97 208-320 59-183 (241)
118 PRK02910 light-independent pro 35.1 4.7E+02 0.01 26.1 13.3 107 68-194 67-191 (519)
119 cd04743 NPD_PKS 2-Nitropropane 35.0 3.4E+02 0.0074 25.4 9.3 63 163-225 22-89 (320)
120 PLN02444 HMP-P synthase 35.0 5E+02 0.011 26.3 20.9 132 44-223 236-379 (642)
121 PRK14464 ribosomal RNA large s 34.9 2.1E+02 0.0047 27.0 8.1 77 152-229 223-317 (344)
122 COG4626 Phage terminase-like p 34.3 1.3E+02 0.0029 30.1 6.8 76 152-227 410-485 (546)
123 TIGR02082 metH 5-methyltetrahy 34.2 6.1E+02 0.013 28.4 12.5 106 107-232 368-477 (1178)
124 COG1121 ZnuC ABC-type Mn/Zn tr 33.4 1.3E+02 0.0028 27.1 6.1 51 122-186 155-205 (254)
125 PF00809 Pterin_bind: Pterin b 33.1 1.1E+02 0.0024 26.4 5.6 68 154-227 56-125 (210)
126 PF00682 HMGL-like: HMGL-like 32.9 3.3E+02 0.0071 23.6 11.4 143 108-290 14-177 (237)
127 COG4992 ArgD Ornithine/acetylo 32.3 2.1E+02 0.0045 27.6 7.6 62 57-132 40-107 (404)
128 PRK13015 3-dehydroquinate dehy 32.2 1.7E+02 0.0037 23.9 6.1 79 105-207 27-107 (146)
129 cd08319 Death_RAIDD Death doma 32.2 58 0.0012 23.9 3.1 71 107-198 10-80 (83)
130 PF01175 Urocanase: Urocanase; 32.2 96 0.0021 30.8 5.3 128 49-201 106-257 (546)
131 PRK12581 oxaloacetate decarbox 32.1 5.1E+02 0.011 25.6 16.6 113 44-180 104-216 (468)
132 PRK13361 molybdenum cofactor b 31.5 4.3E+02 0.0092 24.5 14.4 103 44-169 47-154 (329)
133 TIGR01502 B_methylAsp_ase meth 31.4 3.4E+02 0.0074 26.3 9.1 70 156-227 279-357 (408)
134 PRK07534 methionine synthase I 31.3 4.5E+02 0.0097 24.7 21.1 210 44-289 44-294 (336)
135 PRK13602 putative ribosomal pr 31.3 1.8E+02 0.0039 21.1 5.6 58 161-225 3-60 (82)
136 PF01081 Aldolase: KDPG and KH 31.0 1.8E+02 0.0039 25.0 6.4 28 260-287 93-120 (196)
137 PF05913 DUF871: Bacterial pro 30.7 49 0.0011 31.4 3.2 197 44-287 13-235 (357)
138 PRK00730 rnpA ribonuclease P; 29.8 2.7E+02 0.0058 22.6 6.8 63 89-167 46-110 (138)
139 COG3623 SgaU Putative L-xylulo 29.7 1.1E+02 0.0024 27.2 4.8 74 23-99 65-155 (287)
140 PF05368 NmrA: NmrA-like famil 29.7 1.6E+02 0.0035 25.3 6.2 66 161-229 37-105 (233)
141 cd00466 DHQase_II Dehydroquina 29.6 1.7E+02 0.0036 23.8 5.5 79 105-207 25-105 (140)
142 PF07725 LRR_3: Leucine Rich R 29.5 22 0.00048 18.6 0.4 13 319-331 7-19 (20)
143 PRK09613 thiH thiamine biosynt 29.4 3.6E+02 0.0077 26.7 9.0 107 105-228 116-242 (469)
144 TIGR01862 N2-ase-Ialpha nitrog 29.1 5.5E+02 0.012 25.0 13.4 112 66-194 97-220 (443)
145 TIGR01182 eda Entner-Doudoroff 29.0 3.7E+02 0.008 23.3 8.1 82 111-222 23-105 (204)
146 COG2040 MHT1 Homocysteine/sele 28.9 2.5E+02 0.0055 25.8 7.1 162 44-226 42-241 (300)
147 PRK04390 rnpA ribonuclease P; 28.9 2.8E+02 0.0061 21.6 6.8 65 89-167 44-110 (120)
148 COG2089 SpsE Sialic acid synth 28.8 5E+02 0.011 24.4 10.8 120 44-188 89-224 (347)
149 TIGR03822 AblA_like_2 lysine-2 28.7 4.8E+02 0.01 24.2 11.5 76 154-232 152-240 (321)
150 COG2355 Zn-dependent dipeptida 28.7 4.8E+02 0.011 24.3 10.8 109 45-177 149-260 (313)
151 PF09370 TIM-br_sig_trns: TIM- 28.6 1E+02 0.0023 27.9 4.6 57 155-224 95-156 (268)
152 PRK14457 ribosomal RNA large s 28.4 5.1E+02 0.011 24.4 13.5 149 70-229 163-330 (345)
153 PRK03031 rnpA ribonuclease P; 28.2 2.8E+02 0.006 21.7 6.7 65 89-167 47-114 (122)
154 PF01784 NIF3: NIF3 (NGG1p int 28.1 32 0.0007 30.5 1.4 59 22-82 164-235 (241)
155 PRK08223 hypothetical protein; 28.1 3.8E+02 0.0081 24.6 8.3 154 62-232 4-158 (287)
156 PRK09413 IS2 repressor TnpA; R 27.9 1.2E+02 0.0027 23.6 4.6 38 44-81 15-53 (121)
157 COG1801 Uncharacterized conser 27.8 4.6E+02 0.0099 23.7 10.3 97 30-136 4-115 (263)
158 COG1751 Uncharacterized conser 27.6 3.6E+02 0.0078 22.4 8.8 101 154-268 12-123 (186)
159 COG1358 RPL8A Ribosomal protei 27.6 2.7E+02 0.0058 21.8 6.3 65 154-224 12-76 (116)
160 TIGR02660 nifV_homocitr homoci 27.4 5.3E+02 0.012 24.3 12.0 92 109-222 24-130 (365)
161 cd00885 cinA Competence-damage 27.4 2.2E+02 0.0047 23.8 6.2 63 48-117 21-84 (170)
162 cd00886 MogA_MoaB MogA_MoaB fa 27.4 3.1E+02 0.0066 22.2 7.1 46 50-99 24-70 (152)
163 KOG1720 Protein tyrosine phosp 27.2 1.6E+02 0.0036 25.7 5.4 56 209-275 139-195 (225)
164 TIGR01210 conserved hypothetic 27.2 5E+02 0.011 24.0 15.5 163 44-238 87-264 (313)
165 PF07287 DUF1446: Protein of u 27.1 2.6E+02 0.0057 26.6 7.3 88 157-255 11-100 (362)
166 TIGR00737 nifR3_yhdG putative 27.1 5E+02 0.011 23.9 13.3 132 44-200 74-222 (319)
167 COG2987 HutU Urocanate hydrata 27.0 1.3E+02 0.0029 29.4 5.2 106 70-200 149-266 (561)
168 PLN02681 proline dehydrogenase 26.6 6.3E+02 0.014 24.9 11.7 168 46-229 221-413 (455)
169 PF02679 ComA: (2R)-phospho-3- 26.6 3E+02 0.0066 24.6 7.2 78 45-133 84-169 (244)
170 PRK13958 N-(5'-phosphoribosyl) 26.5 2.3E+02 0.0049 24.5 6.4 67 116-201 16-83 (207)
171 PRK09058 coproporphyrinogen II 26.4 6.2E+02 0.013 24.7 11.2 111 48-179 163-303 (449)
172 cd00405 PRAI Phosphoribosylant 26.3 4E+02 0.0087 22.6 10.5 40 125-183 74-113 (203)
173 PLN02775 Probable dihydrodipic 26.2 4.3E+02 0.0092 24.3 8.3 73 111-203 66-138 (286)
174 smart00148 PLCXc Phospholipase 26.1 3.4E+02 0.0073 21.6 7.0 67 48-117 31-114 (135)
175 PRK14455 ribosomal RNA large s 26.0 3.6E+02 0.0079 25.5 8.1 78 152-229 243-337 (356)
176 PF01118 Semialdhyde_dh: Semia 26.0 91 0.002 24.1 3.5 26 44-69 76-101 (121)
177 COG2089 SpsE Sialic acid synth 25.7 5.6E+02 0.012 24.1 11.3 147 89-288 11-169 (347)
178 KOG2367 Alpha-isopropylmalate 25.7 6.7E+02 0.015 24.9 11.4 85 44-134 203-289 (560)
179 TIGR03471 HpnJ hopanoid biosyn 25.5 6.4E+02 0.014 24.6 11.6 125 149-288 224-362 (472)
180 COG0626 MetC Cystathionine bet 25.5 3E+02 0.0064 26.6 7.4 80 154-234 112-194 (396)
181 cd03770 SR_TndX_transposase Se 25.5 1.3E+02 0.0029 24.0 4.5 52 110-175 54-105 (140)
182 KOG1549 Cysteine desulfurase N 25.3 6.4E+02 0.014 24.6 9.5 153 44-226 56-219 (428)
183 PF06506 PrpR_N: Propionate ca 25.2 91 0.002 26.0 3.6 66 153-223 62-130 (176)
184 cd01976 Nitrogenase_MoFe_alpha 25.2 6.3E+02 0.014 24.4 17.3 167 67-255 79-271 (421)
185 PRK10799 metal-binding protein 24.9 1E+02 0.0022 27.4 4.1 31 51-82 200-230 (247)
186 cd02932 OYE_YqiM_FMN Old yello 24.9 5.6E+02 0.012 23.8 12.9 36 158-193 279-315 (336)
187 cd04740 DHOD_1B_like Dihydroor 24.9 5.2E+02 0.011 23.4 14.7 142 44-199 101-259 (296)
188 COG0646 MetH Methionine syntha 24.8 5.2E+02 0.011 23.9 8.4 40 150-189 268-308 (311)
189 COG3830 ACT domain-containing 24.8 3E+02 0.0065 20.5 6.1 56 50-123 19-75 (90)
190 PF13378 MR_MLE_C: Enolase C-t 24.7 2.1E+02 0.0045 21.5 5.3 51 176-229 3-56 (111)
191 cd01306 PhnM PhnM is believed 24.6 1.7E+02 0.0037 27.4 5.6 71 154-225 94-183 (325)
192 PRK14456 ribosomal RNA large s 24.6 4.7E+02 0.01 24.9 8.6 100 127-229 237-353 (368)
193 cd01974 Nitrogenase_MoFe_beta 24.4 6.6E+02 0.014 24.4 15.1 115 65-194 64-190 (435)
194 PRK10528 multifunctional acyl- 24.1 4.3E+02 0.0092 22.1 8.0 93 164-258 40-147 (191)
195 PRK09284 thiamine biosynthesis 24.1 7.6E+02 0.017 25.0 21.2 132 44-223 231-374 (607)
196 PRK08776 cystathionine gamma-s 24.1 6.5E+02 0.014 24.1 10.4 74 155-229 110-186 (405)
197 COG2120 Uncharacterized protei 24.0 3.9E+02 0.0086 23.5 7.6 79 73-169 26-109 (237)
198 PF04476 DUF556: Protein of un 23.9 5.2E+02 0.011 23.0 10.6 142 52-221 14-183 (235)
199 TIGR02932 vnfK_nitrog V-contai 23.7 7E+02 0.015 24.5 15.1 118 64-195 67-196 (457)
200 PRK00499 rnpA ribonuclease P; 23.6 3.4E+02 0.0075 20.8 6.8 64 89-167 38-104 (114)
201 COG1902 NemA NADH:flavin oxido 23.6 6.4E+02 0.014 24.0 13.6 94 89-193 213-313 (363)
202 PRK01313 rnpA ribonuclease P; 23.2 3.9E+02 0.0084 21.3 6.9 63 89-166 47-113 (129)
203 PRK10415 tRNA-dihydrouridine s 23.1 6.1E+02 0.013 23.5 12.9 131 44-200 76-224 (321)
204 PF14871 GHL6: Hypothetical gl 23.1 81 0.0018 25.3 2.7 22 208-229 47-68 (132)
205 PRK06015 keto-hydroxyglutarate 23.1 2E+02 0.0043 24.9 5.3 64 152-222 37-101 (201)
206 PF14606 Lipase_GDSL_3: GDSL-l 23.1 3.3E+02 0.0073 23.0 6.5 102 25-134 33-146 (178)
207 PLN00191 enolase 22.8 7.4E+02 0.016 24.4 14.3 95 105-225 296-395 (457)
208 TIGR01088 aroQ 3-dehydroquinat 22.7 3.1E+02 0.0067 22.3 5.9 79 105-207 25-105 (141)
209 PRK02714 O-succinylbenzoate sy 22.7 6.1E+02 0.013 23.4 9.3 68 158-227 206-274 (320)
210 TIGR03677 rpl7ae 50S ribosomal 22.7 3.7E+02 0.008 20.9 7.2 64 155-224 12-75 (117)
211 COG3653 N-acyl-D-aspartate/D-g 22.7 7.5E+02 0.016 24.4 15.8 81 45-134 182-278 (579)
212 PRK13347 coproporphyrinogen II 22.7 7.2E+02 0.016 24.2 11.5 126 48-179 152-290 (453)
213 PRK01018 50S ribosomal protein 22.5 3.4E+02 0.0074 20.4 6.1 61 157-224 4-64 (99)
214 cd01966 Nitrogenase_NifN_1 Nit 22.5 6.4E+02 0.014 24.3 9.3 113 67-194 62-187 (417)
215 cd00959 DeoC 2-deoxyribose-5-p 22.4 4.3E+02 0.0094 22.5 7.4 70 44-122 130-202 (203)
216 PF13380 CoA_binding_2: CoA bi 22.4 3.7E+02 0.008 20.7 6.6 19 205-223 89-107 (116)
217 PF01207 Dus: Dihydrouridine s 22.3 6.2E+02 0.013 23.3 8.8 121 44-188 65-203 (309)
218 COG0820 Predicted Fe-S-cluster 22.2 4.4E+02 0.0095 25.0 7.7 98 127-229 215-330 (349)
219 TIGR00735 hisF imidazoleglycer 22.2 5.5E+02 0.012 22.7 10.7 64 158-221 188-253 (254)
220 TIGR01378 thi_PPkinase thiamin 22.1 3.6E+02 0.0079 23.1 6.8 57 208-288 50-110 (203)
221 cd07940 DRE_TIM_IPMS 2-isoprop 22.0 4.5E+02 0.0096 23.5 7.7 47 33-80 132-180 (268)
222 PRK08508 biotin synthase; Prov 21.8 6E+02 0.013 22.9 8.9 72 152-224 40-118 (279)
223 cd07943 DRE_TIM_HOA 4-hydroxy- 21.8 5.7E+02 0.012 22.7 15.9 152 44-229 21-198 (263)
224 PF04748 Polysacc_deac_2: Dive 21.8 5.3E+02 0.012 22.4 8.6 82 44-131 73-182 (213)
225 PRK07328 histidinol-phosphatas 21.8 5.8E+02 0.013 22.8 14.8 122 45-175 18-160 (269)
226 TIGR02026 BchE magnesium-proto 21.8 7.9E+02 0.017 24.3 13.3 67 153-219 321-392 (497)
227 TIGR00290 MJ0570_dom MJ0570-re 21.6 5.6E+02 0.012 22.5 9.7 86 208-306 75-170 (223)
228 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.5 6E+02 0.013 22.9 10.0 121 110-251 23-157 (275)
229 COG5016 Pyruvate/oxaloacetate 21.3 6.2E+02 0.013 24.6 8.4 74 44-125 97-173 (472)
230 PRK15440 L-rhamnonate dehydrat 21.2 3.7E+02 0.0079 25.8 7.3 66 157-224 247-318 (394)
231 TIGR00640 acid_CoA_mut_C methy 21.2 4.3E+02 0.0092 21.0 12.8 107 44-186 15-123 (132)
232 PRK01492 rnpA ribonuclease P; 21.2 4E+02 0.0088 20.7 6.7 62 90-165 47-114 (118)
233 PRK14463 ribosomal RNA large s 21.1 5.4E+02 0.012 24.3 8.3 78 152-229 231-325 (349)
234 PRK13371 4-hydroxy-3-methylbut 21.1 4.7E+02 0.01 25.2 7.7 69 205-284 276-370 (387)
235 cd01971 Nitrogenase_VnfN_like 21.1 7.6E+02 0.016 23.8 10.5 111 67-196 67-191 (427)
236 PRK14461 ribosomal RNA large s 20.9 7.4E+02 0.016 23.7 10.6 86 89-188 105-223 (371)
237 TIGR03597 GTPase_YqeH ribosome 20.8 7.1E+02 0.015 23.4 12.0 117 44-185 50-172 (360)
238 PF01248 Ribosomal_L7Ae: Ribos 20.7 3.4E+02 0.0074 19.7 5.9 63 157-225 3-65 (95)
239 cd01822 Lysophospholipase_L1_l 20.7 4.5E+02 0.0097 21.1 8.5 59 168-226 37-109 (177)
240 PRK14332 (dimethylallyl)adenos 20.4 8.1E+02 0.018 23.9 10.5 128 149-288 180-327 (449)
241 cd03317 NAAAR N-acylamino acid 20.3 4.2E+02 0.0091 24.7 7.4 69 157-227 216-288 (354)
242 PF01408 GFO_IDH_MocA: Oxidore 20.1 3.8E+02 0.0083 20.0 9.6 86 160-254 15-114 (120)
243 PRK14851 hypothetical protein; 20.1 6.7E+02 0.015 26.1 9.3 117 108-232 53-174 (679)
244 PRK13561 putative diguanylate 20.1 7.6E+02 0.016 25.1 9.8 116 93-224 486-610 (651)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=8.3e-65 Score=452.72 Aligned_cols=267 Identities=45% Similarity=0.714 Sum_probs=245.3
Q ss_pred CcCceeeCCCCCccCeecccccccCCCCChHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEE
Q 020025 15 SIPEAPLGSTGKTIPLVGFGTAQFPFGAATEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELF 94 (332)
Q Consensus 15 ~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~ 94 (332)
.+.+.++++ |.+||.||||||+.+. .....+.+.+|++.|+|+||||..||||+.||+|+++. |+ +|+++|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~---~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelF 72 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGD---DEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELF 72 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCC---chhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeE
Confidence 345678888 7889999999999762 23389999999999999999999999999999999985 77 899999
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceec
Q 020025 95 ITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIG 174 (332)
Q Consensus 95 I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iG 174 (332)
|+||+|..+.+++.+.+++++||++||+||+|+|++|||... . .....++|++|++++++|+||+||
T Consensus 73 ittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~------------~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 73 ITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K------------YVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred EEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c------------CccHHHHHHHHHHHHhcCCccEEE
Confidence 999999999899999999999999999999999999999653 1 011689999999999999999999
Q ss_pred cCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCC
Q 020025 175 VSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGK 254 (332)
Q Consensus 175 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~ 254 (332)
||||+..+++++++...+.|++||++||++.++.+++++|+++||.+++||||+. |.. ++..+.+.++|++||.
T Consensus 140 VSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~~-----l~~~~~l~~Ia~k~g~ 213 (280)
T COG0656 140 VSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GGK-----LLDNPVLAEIAKKYGK 213 (280)
T ss_pred eeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-ccc-----cccChHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999996 421 5677899999999999
Q ss_pred CHHHHHHHHHHhCCCEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccCCCCCC
Q 020025 255 SVAQVSLRWVYQQGVSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIPQYRGS 309 (332)
Q Consensus 255 s~~qlal~~~l~~~~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~~~~~~ 309 (332)
|++|++|+|++++|+++||.+++++|+.+|++++++.||+||++.|+++....+.
T Consensus 214 t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 214 TPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 9999999999999999999999999999999999999999999999999987654
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=4.1e-62 Score=435.39 Aligned_cols=281 Identities=48% Similarity=0.760 Sum_probs=255.4
Q ss_pred ceeeCCCCCccCeecccccccCCCCChHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 020025 18 EAPLGSTGKTIPLVGFGTAQFPFGAATEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITS 97 (332)
Q Consensus 18 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~t 97 (332)
..+|.+ |.++|.||||||+.. ..++.+.++.|++.||||||||..|++|+.+|+||++.+.+|.+ +|+++||+|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~~----~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTS 79 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQSP----PGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITS 79 (300)
T ss_pred eEeccC-CCccceeeeEecccC----hhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeee
Confidence 678877 999999999999833 78899999999999999999999999999999999999977755 999999999
Q ss_pred ccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCC--CCC-CCCCCHHHHHHHHHHHHHcCCcceec
Q 020025 98 KLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFS--KED-IEPLDYEGVWEAMEECQNLGLTKSIG 174 (332)
Q Consensus 98 K~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~--~~~-~~~~~~~~~~~~L~~l~~~G~ir~iG 174 (332)
|+|+....++.++.++++||++||+||+|+|++|||...++ .+|.+ .+. ....+..++|++|++++++|++|+||
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~--~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIG 157 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD--SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIG 157 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC--CCCcccccccccccchHHHHHHHHHHHHHcCCceEee
Confidence 99998888999999999999999999999999999987643 11221 111 12256889999999999999999999
Q ss_pred cCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCC
Q 020025 175 VSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGK 254 (332)
Q Consensus 175 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~ 254 (332)
||||+..++++++..+.++|.+||+++++++++.+++++|+++||.+.||||||..+. +. .++..+.+.++|++|+.
T Consensus 158 VSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~~k 234 (300)
T KOG1577|consen 158 VSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKYNK 234 (300)
T ss_pred eecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999998332 12 67889999999999999
Q ss_pred CHHHHHHHHHHhCCCEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccCCCCCC
Q 020025 255 SVAQVSLRWVYQQGVSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIPQYRGS 309 (332)
Q Consensus 255 s~~qlal~~~l~~~~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~~~~~~ 309 (332)
||+|++|||++++|++|||.++|++++.+|++++++.||++|++.|+++....|.
T Consensus 235 t~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 235 TPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred CHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 9999999999999999999999999999999999999999999999999888775
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.3e-59 Score=425.13 Aligned_cols=286 Identities=28% Similarity=0.423 Sum_probs=256.1
Q ss_pred ccccccCCCcCceeeCCCCCccCeeccccccc---CC-CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHH
Q 020025 7 SLKMKTMVSIPEAPLGSTGKTIPLVGFGTAQF---PF-GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIA 79 (332)
Q Consensus 7 ~~~~~~~~~m~~~~lg~tg~~vs~lglG~~~~---~~-~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~ 79 (332)
++.++....|+|+++|++|++||++|||||.+ ++ .+ ++++.+++++|+|+|+|+||||+.|| ||..+|++|+
T Consensus 3 ~~~~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~-~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~ 81 (336)
T KOG1575|consen 3 APEPSTELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQID-KEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIK 81 (336)
T ss_pred cccccchhcceeeeccCCCceecceeecceeeeccccCCC-HHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHH
Confidence 44555667899999999999999999999533 23 36 89999999999999999999999999 8999999999
Q ss_pred HHHhcCCCCCCCcEEEEeccCC-------CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCC
Q 020025 80 QALRLGLIKSRDELFITSKLWF-------GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPL 152 (332)
Q Consensus 80 ~~~~~g~~~~R~~~~I~tK~~~-------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 152 (332)
++ +. +|++++|+||++. ...++..+.+.++.|+++||++|||+|++||+|...|
T Consensus 82 ~~---~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-------------- 142 (336)
T KOG1575|consen 82 SR---GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-------------- 142 (336)
T ss_pred hc---CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC--------------
Confidence 86 54 8999999999953 3456788999999999999999999999999988765
Q ss_pred CHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch---HHHHHHHHHhCceEEEeccCCC
Q 020025 153 DYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 153 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
.++++++|.+++++|||||||+|+++++++.++...+.++++++|++||++.++ .+++++|++.||++++|+||++
T Consensus 143 -iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~ 221 (336)
T KOG1575|consen 143 -IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR 221 (336)
T ss_pred -HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc
Confidence 889999999999999999999999999999999999888899999999999986 5699999999999999999999
Q ss_pred CCCCCCCccc---------------------------cchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHH
Q 020025 230 KGTIWGTNRV---------------------------MECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKER 280 (332)
Q Consensus 230 ~G~l~~~~~~---------------------------~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~ 280 (332)
|+|+++... .....+.++|+++|+|++|+||+|+++++ ++||||+++++|
T Consensus 222 -G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~ 300 (336)
T KOG1575|consen 222 -GLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQ 300 (336)
T ss_pred -ceeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHH
Confidence 999976221 01245889999999999999999999998 899999999999
Q ss_pred HHHhHcccCCCCCHHHHHHHhccCCCCCCCCCCc
Q 020025 281 MKENLDIFYWELSAEELQKIEQIPQYRGSRSEEH 314 (332)
Q Consensus 281 l~~nl~a~~~~L~~e~~~~i~~l~~~~~~~~~~~ 314 (332)
|+||++|++..|+++++.+|+++.......+.++
T Consensus 301 l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~ 334 (336)
T KOG1575|consen 301 LKENIGALSVKLTPEEIKELEEIIDKILGFGPRS 334 (336)
T ss_pred HHHHHhhhhccCCHHHHHHHHHhhccccCcCCCC
Confidence 9999999999999999999999998877766554
No 4
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5.7e-59 Score=430.22 Aligned_cols=268 Identities=34% Similarity=0.508 Sum_probs=239.2
Q ss_pred cCceeeCCCCCccCeecccccccCCC---CChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHHHhcCCCCC
Q 020025 16 IPEAPLGSTGKTIPLVGFGTAQFPFG---AATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQALRLGLIKS 89 (332)
Q Consensus 16 m~~~~lg~tg~~vs~lglG~~~~~~~---~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~~~~g~~~~ 89 (332)
|++|+||++|++||+||||||.+++. ...+++.++|++|+|+|||+||||+.|| ||+++|++|+.. + .
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~---~ 74 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G---R 74 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C---C
Confidence 78999999999999999999999872 2144677899999999999999999999 899999999965 2 3
Q ss_pred CCcEEEEeccCCC----------CCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 020025 90 RDELFITSKLWFG----------HAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWE 159 (332)
Q Consensus 90 R~~~~I~tK~~~~----------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (332)
|++++|+||++.. +.++++|+++++.||+||||||||+|++|||+...+ .++++.
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p---------------~~e~~~ 139 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP---------------IEETLE 139 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC---------------HHHHHH
Confidence 8999999999532 348999999999999999999999999999987544 789999
Q ss_pred HHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch--HHHHHHHHHhCceEEEeccCCCCCCCCCCc
Q 020025 160 AMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITAYSPLGAKGTIWGTN 237 (332)
Q Consensus 160 ~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~ 237 (332)
+|.+|+++||||+||+||++++++.++.+.. .+++++|.+||+++++ .+++++|+++||++++|+||++ |+|+++.
T Consensus 140 aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~Ltgk~ 217 (316)
T COG0667 140 ALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLLTGKY 217 (316)
T ss_pred HHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-cccCCCc
Confidence 9999999999999999999999999999876 6678999999999965 4689999999999999999999 9999863
Q ss_pred cc------------c----------chHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCCCC
Q 020025 238 RV------------M----------ECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWELS 293 (332)
Q Consensus 238 ~~------------~----------~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~ 293 (332)
.- . ....+.++|+++|+||+|+||+|++++| ++||+|+++++||++|+++++..|+
T Consensus 218 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~ 297 (316)
T COG0667 218 LPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLS 297 (316)
T ss_pred CCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCC
Confidence 21 0 1145889999999999999999999998 7999999999999999999999999
Q ss_pred HHHHHHHhccCCC
Q 020025 294 AEELQKIEQIPQY 306 (332)
Q Consensus 294 ~e~~~~i~~l~~~ 306 (332)
+++++.|++....
T Consensus 298 ~~~~~~l~~~~~~ 310 (316)
T COG0667 298 EEELAALDEISAE 310 (316)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987654
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.9e-57 Score=412.65 Aligned_cols=254 Identities=35% Similarity=0.599 Sum_probs=230.0
Q ss_pred CccCeecccccccCCCCChHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC
Q 020025 26 KTIPLVGFGTAQFPFGAATEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAH 105 (332)
Q Consensus 26 ~~vs~lglG~~~~~~~~~~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~ 105 (332)
++||.||||||.++ .+++.+++++|+++|||+||||+.||+|..+|++|+.. |. +|+++||+||++....+
T Consensus 1 ~~vs~lglGt~~~~----~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~ 71 (267)
T PRK11172 1 MSIPAFGLGTFRLK----DQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLA 71 (267)
T ss_pred CCCCCEeeEccccC----hHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCC
Confidence 46999999999875 67899999999999999999999999999999999864 55 79999999999766677
Q ss_pred hhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHH
Q 020025 106 RQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLER 185 (332)
Q Consensus 106 ~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~ 185 (332)
++.+++++++||+|||+||||+|++|||++.. ....+++|++|++|+++||||+||||||+.+++++
T Consensus 72 ~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~-------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~ 138 (267)
T PRK11172 72 KDKLIPSLKESLQKLRTDYVDLTLIHWPSPND-------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQ 138 (267)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCC-------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHH
Confidence 89999999999999999999999999996421 12367899999999999999999999999999999
Q ss_pred HHHHcCC-CCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHHHH
Q 020025 186 LLATAKI-PPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLRWV 264 (332)
Q Consensus 186 ~~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~ 264 (332)
+++.... ++.++|++||++.++.+++++|+++||++++|+||++ |.+. ..+.+.++|+++++|++|+||+|+
T Consensus 139 ~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~------~~~~l~~~a~~~~~s~aqval~w~ 211 (267)
T PRK11172 139 AIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL------KDPVIARIAAKHNATPAQVILAWA 211 (267)
T ss_pred HHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc------CCHHHHHHHHHhCCCHHHHHHHHH
Confidence 9886654 6789999999999888999999999999999999998 7543 236799999999999999999999
Q ss_pred HhCCCEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccCCCCC
Q 020025 265 YQQGVSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIPQYRG 308 (332)
Q Consensus 265 l~~~~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~~~~~ 308 (332)
+++++++|+|+++++|+++|+++++++||+++++.|+++.++.+
T Consensus 212 l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 212 MQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred HhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 99998899999999999999999999999999999999987643
No 6
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.5e-56 Score=414.11 Aligned_cols=264 Identities=27% Similarity=0.423 Sum_probs=230.2
Q ss_pred ceeeCCCCCccCeecccccc-cCC-CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHHHhcCCCCCCCc
Q 020025 18 EAPLGSTGKTIPLVGFGTAQ-FPF-GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQALRLGLIKSRDE 92 (332)
Q Consensus 18 ~~~lg~tg~~vs~lglG~~~-~~~-~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~~~~g~~~~R~~ 92 (332)
||+||++|++||+||||||. +++ .+ .+++.++|++|+++|||+||||+.|| ||+.+|++|+.. +. +|++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~-~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~~ 74 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQIS-DEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRSS 74 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCC-HHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--Cccc
Confidence 58899999999999999996 443 45 78999999999999999999999998 899999999853 43 6999
Q ss_pred EEEEeccCCC-------CCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 020025 93 LFITSKLWFG-------HAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQ 165 (332)
Q Consensus 93 ~~I~tK~~~~-------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 165 (332)
++|+||++.. ..+++.+++++++||++||+||||+|++|||+... ..+++|++|++|+
T Consensus 75 ~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~---------------~~~e~~~aL~~l~ 139 (317)
T TIGR01293 75 YVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNT---------------PMEETVRAMTYVI 139 (317)
T ss_pred EEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCC---------------CHHHHHHHHHHHH
Confidence 9999998422 34689999999999999999999999999996532 3789999999999
Q ss_pred HcCCcceeccCCCcHHHHHHHHHHcC----CCCeeeeeecCcccch---HHHHHHHHHhCceEEEeccCCCCCCCCCCcc
Q 020025 166 NLGLTKSIGVSNFACKKLERLLATAK----IPPAVNQVELNPVWQQ---KKLRDFCEKKGIHITAYSPLGAKGTIWGTNR 238 (332)
Q Consensus 166 ~~G~ir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~ 238 (332)
++||||+||+|||+..++.++..... ++++++|++||++.++ .+++++|+++||++++|+||++ |+|+++..
T Consensus 140 ~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~ 218 (317)
T TIGR01293 140 NQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYD 218 (317)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCC
Confidence 99999999999999999887755432 5788999999999875 3789999999999999999998 99986421
Q ss_pred c-----------------------------cchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcc
Q 020025 239 V-----------------------------MECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDI 287 (332)
Q Consensus 239 ~-----------------------------~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a 287 (332)
- ...+.+.++|+++|+|++|+||+|++++| +++|+|+++++|+++|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a 298 (317)
T TIGR01293 219 SGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGS 298 (317)
T ss_pred CCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHH
Confidence 0 00146889999999999999999999997 5789999999999999999
Q ss_pred cCC--CCCHHHHHHHhcc
Q 020025 288 FYW--ELSAEELQKIEQI 303 (332)
Q Consensus 288 ~~~--~L~~e~~~~i~~l 303 (332)
++. +|++++++.|+++
T Consensus 299 ~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 299 LQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred hhccCCCCHHHHHHHHhh
Confidence 987 9999999999975
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.1e-55 Score=415.19 Aligned_cols=274 Identities=26% Similarity=0.432 Sum_probs=235.2
Q ss_pred CCCcCceeeCCCCCccCeecccccc-cCCCCChHHHHHHHHHHHHhCCCeEecCCCcC-----ChHHHHHHHHHHHhcCC
Q 020025 13 MVSIPEAPLGSTGKTIPLVGFGTAQ-FPFGAATEAVKESVVHAIEVGYRHFDTAAIYQ-----SEEPLGEAIAQALRLGL 86 (332)
Q Consensus 13 ~~~m~~~~lg~tg~~vs~lglG~~~-~~~~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg-----se~~vG~al~~~~~~g~ 86 (332)
+..|+||+||+||++||+||||||. ++...+.+++.++|++|+++|||+||||+.|| +|+.+|++|++.. +.
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~~ 87 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--AA 87 (346)
T ss_pred CCCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--cC
Confidence 4568999999999999999999996 55322167789999999999999999999998 6999999998531 11
Q ss_pred CCCCCcEEEEeccCC--------CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 020025 87 IKSRDELFITSKLWF--------GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVW 158 (332)
Q Consensus 87 ~~~R~~~~I~tK~~~--------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (332)
.|+++||+||++. .+.+++.+++++++||++||+||||+|++|||+... ..+++|
T Consensus 88 --~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~---------------~~~e~~ 150 (346)
T PRK09912 88 --YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENT---------------PMEETA 150 (346)
T ss_pred --CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC---------------CHHHHH
Confidence 5999999999752 124688899999999999999999999999996533 278999
Q ss_pred HHHHHHHHcCCcceeccCCCcHHHHHHHHH---HcCCCCeeeeeecCcccch---HHHHHHHHHhCceEEEeccCCCCCC
Q 020025 159 EAMEECQNLGLTKSIGVSNFACKKLERLLA---TAKIPPAVNQVELNPVWQQ---KKLRDFCEKKGIHITAYSPLGAKGT 232 (332)
Q Consensus 159 ~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~~l~~~G~ 232 (332)
++|++|+++||||+||||||++++++++.+ ...+++.++|++||++++. .+++++|+++||++++|+||++ |+
T Consensus 151 ~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~-G~ 229 (346)
T PRK09912 151 SALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ-GL 229 (346)
T ss_pred HHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-cc
Confidence 999999999999999999999998876654 3356788999999999874 4799999999999999999998 99
Q ss_pred CCCCcc----------------------cc------chHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHH
Q 020025 233 IWGTNR----------------------VM------ECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMK 282 (332)
Q Consensus 233 l~~~~~----------------------~~------~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~ 282 (332)
|+++.. .. ..+.+.++|+++|+|++|+||+|++++| +++|+|+++++||+
T Consensus 230 Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~ 309 (346)
T PRK09912 230 LTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLE 309 (346)
T ss_pred ccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHH
Confidence 986410 00 0256888999999999999999999998 67899999999999
Q ss_pred HhHcccC-CCCCHHHHHHHhccCCC
Q 020025 283 ENLDIFY-WELSAEELQKIEQIPQY 306 (332)
Q Consensus 283 ~nl~a~~-~~L~~e~~~~i~~l~~~ 306 (332)
+|+++++ .+|++++++.|+++.+.
T Consensus 310 en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 310 ENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 9999984 79999999999998654
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.1e-55 Score=415.60 Aligned_cols=281 Identities=26% Similarity=0.363 Sum_probs=235.3
Q ss_pred cCceeeCCCCCccCeecccccccCC-CCChHHHHHHHHHHHHhCCCeEecCCCcC----------ChHHHHHHHHHHHhc
Q 020025 16 IPEAPLGSTGKTIPLVGFGTAQFPF-GAATEAVKESVVHAIEVGYRHFDTAAIYQ----------SEEPLGEAIAQALRL 84 (332)
Q Consensus 16 m~~~~lg~tg~~vs~lglG~~~~~~-~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg----------se~~vG~al~~~~~~ 84 (332)
|+||+||+||++||+||||||.+|. .+ .+++.++|+.|+++|||+||||+.|| ||..+|++|+..
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~-~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~--- 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNS-EADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR--- 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCC-HHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---
Confidence 7899999999999999999999975 35 78999999999999999999999996 899999999853
Q ss_pred CCCCCCCcEEEEeccCCC------------CCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCC--CC-CCCCCCCCC
Q 020025 85 GLIKSRDELFITSKLWFG------------HAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKP--GT-GFPFSKEDI 149 (332)
Q Consensus 85 g~~~~R~~~~I~tK~~~~------------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~--~~-~~~~~~~~~ 149 (332)
+ .|++++|+||++.. ..+++.+++++++||++||+||||+|++|||+.... +. .+....+ .
T Consensus 77 ~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~-~ 152 (346)
T PRK10625 77 G---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDS-A 152 (346)
T ss_pred C---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccc-c
Confidence 3 59999999998521 346889999999999999999999999999965210 00 0000000 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHc---C-CCCeeeeeecCcccch--HHHHHHHHHhCceEEE
Q 020025 150 EPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATA---K-IPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITA 223 (332)
Q Consensus 150 ~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a 223 (332)
....++++|++|++|+++||||+||+|||+...+.++.... . ..+.++|++||+++++ .+++++|+++||++++
T Consensus 153 ~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via 232 (346)
T PRK10625 153 PAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 (346)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEE
Confidence 01247899999999999999999999999999887765432 2 3567899999999875 5799999999999999
Q ss_pred eccCCCCCCCCCCcc-----------cc-------------chHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCC
Q 020025 224 YSPLGAKGTIWGTNR-----------VM-------------ECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFN 277 (332)
Q Consensus 224 ~~~l~~~G~l~~~~~-----------~~-------------~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~ 277 (332)
|+||++ |+|+++.. .. ....+.++|+++|+|++|+||+|++++| +++|+|+++
T Consensus 233 ~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~ 311 (346)
T PRK10625 233 YSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATT 311 (346)
T ss_pred eccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCC
Confidence 999998 99876410 01 1257889999999999999999999999 468999999
Q ss_pred HHHHHHhHcccCCCCCHHHHHHHhccCC
Q 020025 278 KERMKENLDIFYWELSAEELQKIEQIPQ 305 (332)
Q Consensus 278 ~~~l~~nl~a~~~~L~~e~~~~i~~l~~ 305 (332)
++||++|+++++++|++++++.|+++.+
T Consensus 312 ~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 312 MEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999864
No 9
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2e-54 Score=394.22 Aligned_cols=261 Identities=38% Similarity=0.678 Sum_probs=233.8
Q ss_pred ceeeCCCCCccCeecccccccCCCCChHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 020025 18 EAPLGSTGKTIPLVGFGTAQFPFGAATEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITS 97 (332)
Q Consensus 18 ~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~t 97 (332)
+..| ++|++||.||||||.++ .+++.+++++|++.|||+||||+.||+|+.+|++|+.. ++ +|++++|+|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~~----~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~t 75 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQAS----NEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFITT 75 (275)
T ss_pred eEEc-CCCCccCCcceECccCC----HHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEEE
Confidence 4567 45999999999999864 78899999999999999999999999999999999864 54 699999999
Q ss_pred ccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC
Q 020025 98 KLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN 177 (332)
Q Consensus 98 K~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 177 (332)
|++.. +++.+++++++||++||+||||+|++|+|+.... ...++|++|++|+++|+||+|||||
T Consensus 76 K~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~--------------~~~~~~~~l~~l~~~G~ir~iGvSn 139 (275)
T PRK11565 76 KLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID--------------HYVEAWKGMIELQKEGLIKSIGVCN 139 (275)
T ss_pred EecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC--------------cHHHHHHHHHHHHHcCCeeEEeecc
Confidence 98643 4689999999999999999999999999964311 2579999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHH
Q 020025 178 FACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVA 257 (332)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ 257 (332)
|++++++++++...+.|.++|++|+++.++.+++++|+++||++++|+||++ |.. .....+.+.++|+++|+|++
T Consensus 140 ~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~~----~~~~~~~l~~ia~~~g~s~a 214 (275)
T PRK11565 140 FQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GGK----GVFDQKVIRDLADKYGKTPA 214 (275)
T ss_pred CCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CCc----ccccCHHHHHHHHHhCCCHH
Confidence 9999999998877788899999999999888999999999999999999986 531 12345789999999999999
Q ss_pred HHHHHHHHhCCCEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccCCCCCC
Q 020025 258 QVSLRWVYQQGVSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIPQYRGS 309 (332)
Q Consensus 258 qlal~~~l~~~~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~~~~~~ 309 (332)
|+||||+++++.++|+|+++++|+++|+++++++|+++++++|+++....+.
T Consensus 215 q~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~~ 266 (275)
T PRK11565 215 QIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKRL 266 (275)
T ss_pred HHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCCc
Confidence 9999999999988999999999999999999999999999999999876553
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.7e-54 Score=401.10 Aligned_cols=270 Identities=21% Similarity=0.280 Sum_probs=230.4
Q ss_pred ceeeCCCCCccCeecccccccCC----CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHHHhcCCCCCC
Q 020025 18 EAPLGSTGKTIPLVGFGTAQFPF----GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQALRLGLIKSR 90 (332)
Q Consensus 18 ~~~lg~tg~~vs~lglG~~~~~~----~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~~~~g~~~~R 90 (332)
||+||+||++||+||||||.++. .+ .+++.+++++|+++|||+||||+.|| +|..+|++|+.. +. +|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~-~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~R 74 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVS-EEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--PR 74 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCC-HHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--Cc
Confidence 68899999999999999998863 45 78999999999999999999999997 699999999864 43 69
Q ss_pred CcEEEEeccCC----CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020025 91 DELFITSKLWF----GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN 166 (332)
Q Consensus 91 ~~~~I~tK~~~----~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 166 (332)
+++||+||++. .+.+++.+++++++||++||+||||+|++|+|+.... ....+++|++|++|++
T Consensus 75 ~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~------------~~~~~~~~~~l~~l~~ 142 (314)
T PLN02587 75 EKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL------------DQIVNETIPALQKLKE 142 (314)
T ss_pred ceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch------------hhhHHHHHHHHHHHHH
Confidence 99999999974 2457899999999999999999999999999964221 1235689999999999
Q ss_pred cCCcceeccCCCcHHHHHHHHHHc---CCCCeeeeeecCcccch-HHHHHHHHHhCceEEEeccCCCCCCCCCCcc--c-
Q 020025 167 LGLTKSIGVSNFACKKLERLLATA---KIPPAVNQVELNPVWQQ-KKLRDFCEKKGIHITAYSPLGAKGTIWGTNR--V- 239 (332)
Q Consensus 167 ~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~--~- 239 (332)
+||||+||+|||++++++.+.+.. .+++.++|+.||+.++. .+++++|+++||++++|+||++ |+|+++.. .
T Consensus 143 ~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~ 221 (314)
T PLN02587 143 SGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPEWH 221 (314)
T ss_pred CCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCCCC
Confidence 999999999999999888776532 24555678888887653 6899999999999999999998 99987521 0
Q ss_pred -------cchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCC----CCCHHHHHHHhccCCC
Q 020025 240 -------MECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYW----ELSAEELQKIEQIPQY 306 (332)
Q Consensus 240 -------~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~----~L~~e~~~~i~~l~~~ 306 (332)
.....+.++|+++++|++|+||+|++++| +++|+|+++++|+++|+++++. +|+++++++|+++...
T Consensus 222 ~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 222 PAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 01245778999999999999999999999 5789999999999999999763 7999999999988753
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=7e-54 Score=393.14 Aligned_cols=264 Identities=40% Similarity=0.594 Sum_probs=237.6
Q ss_pred ceeeCCCCCccCeecccccccCC--CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHHHhcCCCCCCCc
Q 020025 18 EAPLGSTGKTIPLVGFGTAQFPF--GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQALRLGLIKSRDE 92 (332)
Q Consensus 18 ~~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~~~~g~~~~R~~ 92 (332)
+|+||+||++||+|||||+.++. .+ .+++.+++++|++.|||+||||+.|| +|+.+|++|+.. + .|++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~-~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~~ 73 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVD-EEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PREE 73 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCC-HHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcCc
Confidence 57899999999999999998875 25 78999999999999999999999998 899999999964 1 3999
Q ss_pred EEEEeccCCCC-----CChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 020025 93 LFITSKLWFGH-----AHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNL 167 (332)
Q Consensus 93 ~~I~tK~~~~~-----~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 167 (332)
++|+||++... .+++.+++++++||++||+||||+|+||+|+.... ...++|++|++++++
T Consensus 74 ~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~--------------~~~~~~~~l~~l~~~ 139 (285)
T cd06660 74 VFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP--------------DIEETLRALEELVKE 139 (285)
T ss_pred EEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC--------------CHHHHHHHHHHHHHc
Confidence 99999997654 57899999999999999999999999999965321 378999999999999
Q ss_pred CCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchH--HHHHHHHHhCceEEEeccCCCCCCCCCCcccc-----
Q 020025 168 GLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQK--KLRDFCEKKGIHITAYSPLGAKGTIWGTNRVM----- 240 (332)
Q Consensus 168 G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~----- 240 (332)
|+||+||||+|+++.++++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.++++....
T Consensus 140 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~~~ 218 (285)
T cd06660 140 GKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPPPE 218 (285)
T ss_pred CCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCCCh
Confidence 99999999999999999999887788999999999999875 499999999999999999998 8887553322
Q ss_pred --chHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhcc
Q 020025 241 --ECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWELSAEELQKIEQI 303 (332)
Q Consensus 241 --~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l 303 (332)
....+..++++++++++|+|++|++++| +++|+|+++++|+++|+++...+|++++++.|+++
T Consensus 219 ~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 219 GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 1367899999999999999999999997 78999999999999999999889999999999864
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.5e-52 Score=380.34 Aligned_cols=265 Identities=25% Similarity=0.351 Sum_probs=225.9
Q ss_pred cCCCcCceeeCCCCCccCeecccccccCC-------CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHH
Q 020025 12 TMVSIPEAPLGSTGKTIPLVGFGTAQFPF-------GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQA 81 (332)
Q Consensus 12 ~~~~m~~~~lg~tg~~vs~lglG~~~~~~-------~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~ 81 (332)
+.++-.+++|+ |++||+||||||.+++ .+ .+++.++|++|+++|||+||||+.|| +|+.+|++++.
T Consensus 3 ~~~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~-~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~- 78 (290)
T PRK10376 3 TIMSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKD-RDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP- 78 (290)
T ss_pred ccccCCceecC--CeeecccceeccccCCCCcCCCCCC-HHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-
Confidence 34445566775 8999999999998863 24 68899999999999999999999998 68899999962
Q ss_pred HhcCCCCCCCcEEEEeccCC---------CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCC
Q 020025 82 LRLGLIKSRDELFITSKLWF---------GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPL 152 (332)
Q Consensus 82 ~~~g~~~~R~~~~I~tK~~~---------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 152 (332)
.|++++|+||++. ...+++.+++++++||+|||+||||+|++|++..... | ...
T Consensus 79 -------~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~----p------~~~ 141 (290)
T PRK10376 79 -------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHG----P------AEG 141 (290)
T ss_pred -------CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCC----C------CCC
Confidence 5999999999842 3456889999999999999999999999998632110 0 012
Q ss_pred CHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch-HHHHHHHHHhCceEEEeccCCCCC
Q 020025 153 DYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ-KKLRDFCEKKGIHITAYSPLGAKG 231 (332)
Q Consensus 153 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~~l~~~G 231 (332)
...++|++|++|+++||||+||||||++++++++.+.. ++.++|++||++.+. .+++++|+++||++++|+||++ +
T Consensus 142 ~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~ 218 (290)
T PRK10376 142 SIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-F 218 (290)
T ss_pred CHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-C
Confidence 37789999999999999999999999999999988765 457899999999875 6799999999999999999975 3
Q ss_pred CCCCCccccchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccCCC
Q 020025 232 TIWGTNRVMECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIPQY 306 (332)
Q Consensus 232 ~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~~~ 306 (332)
.. ...+.+.++|+++++|++|+||+|+++++ +++|+|+++++|+++|+++++.+|++++++.|+++.+.
T Consensus 219 ~~------~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 219 TP------LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred Ch------hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 11 12468999999999999999999999884 78899999999999999999999999999999987653
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.4e-52 Score=380.86 Aligned_cols=254 Identities=36% Similarity=0.575 Sum_probs=218.9
Q ss_pred eecccccccCC--CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHHHhcCCCCCCCcEEEEecc-----
Q 020025 30 LVGFGTAQFPF--GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQALRLGLIKSRDELFITSKL----- 99 (332)
Q Consensus 30 ~lglG~~~~~~--~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~~~~g~~~~R~~~~I~tK~----- 99 (332)
+||||||++++ .+ .+++.++|+.|++.|||+||||+.|| +|+.+|++|++. +. +|++++|+||+
T Consensus 1 ~l~lG~~~~~~~~~~-~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGERVS-EEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGK 74 (283)
T ss_dssp SBEEECTTBTTTTST-HHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSS
T ss_pred CEEEEccccCCCCCC-HHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--cccccccccccccccc
Confidence 58999999975 56 89999999999999999999999993 899999999972 33 89999999999
Q ss_pred CCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCc
Q 020025 100 WFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFA 179 (332)
Q Consensus 100 ~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 179 (332)
.....+++.+++++++||++||+||+|+|++|+|+.... ...++|++|++|+++|+||+||||||+
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~--------------~~~~~~~~l~~l~~~G~ir~iGvs~~~ 140 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED--------------ALEEVWEALEELKKEGKIRHIGVSNFS 140 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS--------------HHHHHHHHHHHHHHTTSEEEEEEES--
T ss_pred ccccccccccccccccccccccccchhcccccccccccc--------------ccchhhhhhhhcccccccccccccccc
Confidence 456778999999999999999999999999999975421 378999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCeeeeeecCccc--chHHHHHHHHHhCceEEEeccCCCCCCCCCCcc--------------ccchH
Q 020025 180 CKKLERLLATAKIPPAVNQVELNPVW--QQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNR--------------VMECQ 243 (332)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~--------------~~~~~ 243 (332)
++.++++.....++|+++|++||++. ...+++++|+++||++++|+|+++ |++++... ....+
T Consensus 141 ~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T PF00248_consen 141 PEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELAD 219 (283)
T ss_dssp HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhhh
Confidence 99999997777788999999999993 348999999999999999999998 98875421 14567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccC
Q 020025 244 MLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIP 304 (332)
Q Consensus 244 ~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~ 304 (332)
.+.++++++++|++|+||+|+++++ .++|+|+++++|+++|+++++.+||++++++|+++.
T Consensus 220 ~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 220 ALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 8999999999999999999999876 899999999999999999999999999999999874
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=5.1e-50 Score=367.80 Aligned_cols=251 Identities=16% Similarity=0.217 Sum_probs=213.6
Q ss_pred CCccCeecccccccCC-----------CCChHHHHHHHHHHHHhCCCeEecCCCcC-ChHHHHHHHHHHHhcCCCCCCCc
Q 020025 25 GKTIPLVGFGTAQFPF-----------GAATEAVKESVVHAIEVGYRHFDTAAIYQ-SEEPLGEAIAQALRLGLIKSRDE 92 (332)
Q Consensus 25 g~~vs~lglG~~~~~~-----------~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg-se~~vG~al~~~~~~g~~~~R~~ 92 (332)
+++||+||||||.+|+ .+ .+++.++|+.|++.|||+||||+.|| ||..+|++|+.. .+++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~-~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~ 73 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTP-EAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFR 73 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCC-HHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceE
Confidence 5789999999998873 24 78999999999999999999999999 899999999731 3567
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcce
Q 020025 93 LFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKS 172 (332)
Q Consensus 93 ~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 172 (332)
++|+||.. ..+++.+++++++||+|||+||||+|++|+|+.... ...+++|++|++|+++||||+
T Consensus 74 ~~i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-------------~~~~~~~~~l~~l~~~Gkir~ 138 (292)
T PRK14863 74 VTLSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG-------------PHGAALWERLQALKDQGLFAK 138 (292)
T ss_pred eecccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC-------------cchHHHHHHHHHHHHcCCcce
Confidence 89999853 346789999999999999999999999999854211 112578999999999999999
Q ss_pred eccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch---HHHHHHHHHhCceEEEeccCCCCCCCCCCccc---------c
Q 020025 173 IGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRDFCEKKGIHITAYSPLGAKGTIWGTNRV---------M 240 (332)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~---------~ 240 (332)
||||||++.++.++.. ..+|+++|++||+++++ .+++++|+++||++++|+||++ |+|++.... .
T Consensus 139 iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~~ 215 (292)
T PRK14863 139 IGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGASG 215 (292)
T ss_pred EeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhhH
Confidence 9999999999887764 45778999999999985 3599999999999999999998 998754211 1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHh
Q 020025 241 ECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWELSAEELQKIE 301 (332)
Q Consensus 241 ~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~ 301 (332)
....+.+++.++++|++|+||+|++++| +++|+|+++++|+++|+++.+.+++++.+++|.
T Consensus 216 ~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 216 RLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 1245667788889999999999999998 678999999999999999998888887776664
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.2e-48 Score=334.88 Aligned_cols=268 Identities=26% Similarity=0.407 Sum_probs=239.7
Q ss_pred cCceeeCCCCCccCeecccccccCC--CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHHHhcCCCCCC
Q 020025 16 IPEAPLGSTGKTIPLVGFGTAQFPF--GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQALRLGLIKSR 90 (332)
Q Consensus 16 m~~~~lg~tg~~vs~lglG~~~~~~--~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~~~~g~~~~R 90 (332)
|++.+++..|+++|++.+|+|++.. .. .++....++.|+|.|||+||-|+.|| .|+++|++|+.. ++ -|
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~-~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~--p~---lR 74 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMS-ARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA--PG---LR 74 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCC-HHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC--hh---hh
Confidence 7789999889999999999999875 44 67899999999999999999999999 699999999853 24 69
Q ss_pred CcEEEEeccCC------------CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 020025 91 DELFITSKLWF------------GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVW 158 (332)
Q Consensus 91 ~~~~I~tK~~~------------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (332)
+++.|.||++. .+.+.++|..++|+||++|+|||+|++++|.||+. ++.+++.
T Consensus 75 ekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL---------------md~eeVA 139 (298)
T COG4989 75 EKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL---------------MDAEEVA 139 (298)
T ss_pred hheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc---------------CCHHHHH
Confidence 99999999953 35678999999999999999999999999999764 5689999
Q ss_pred HHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch---HHHHHHHHHhCceEEEeccCCCCCCCCC
Q 020025 159 EAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRDFCEKKGIHITAYSPLGAKGTIWG 235 (332)
Q Consensus 159 ~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~~l~~~G~l~~ 235 (332)
+|+..|++.||||++|||||++.+++-+-+....+.+.||+++|++... ...+++|+.+.|.+++||||+++|++++
T Consensus 140 eAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 140 EAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred HHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 9999999999999999999999999998888888889999999999875 6799999999999999999999555554
Q ss_pred Ccc-ccchHHHHHHHHHcC-CCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccC
Q 020025 236 TNR-VMECQMLKEIANAKG-KSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIP 304 (332)
Q Consensus 236 ~~~-~~~~~~l~~la~~~~-~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~ 304 (332)
... ..-..++..+|.++| .|.++++++|++.+| ..||+|+.+++++++.+++++..||.++|-+|-...
T Consensus 220 ~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 220 DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 322 223578999999999 799999999999999 789999999999999999999999999999987654
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.6e-47 Score=345.14 Aligned_cols=279 Identities=25% Similarity=0.321 Sum_probs=232.8
Q ss_pred cCceeeCCCCCccCeecccccccCC-----CCChHHHHHHHHHHHHhCCCeEecCCCc--C-ChHHHHHHHHHHHhcCCC
Q 020025 16 IPEAPLGSTGKTIPLVGFGTAQFPF-----GAATEAVKESVVHAIEVGYRHFDTAAIY--Q-SEEPLGEAIAQALRLGLI 87 (332)
Q Consensus 16 m~~~~lg~tg~~vs~lglG~~~~~~-----~~~~~~~~~~l~~Ale~Gin~~Dta~~Y--g-se~~vG~al~~~~~~g~~ 87 (332)
|.||++|+||.++|.||||||+++. .+ .+.+.++|++|+++||||||||..| | ||..+|+||++.
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id-~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------ 73 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSID-EENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------ 73 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCcc-HHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------
Confidence 7899999999999999999999875 36 8999999999999999999999999 6 899999999974
Q ss_pred CCCCcEEEEeccCC-CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020025 88 KSRDELFITSKLWF-GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN 166 (332)
Q Consensus 88 ~~R~~~~I~tK~~~-~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 166 (332)
.|++|+++||+.. .-.+++.+++-++++|++||+||+|+|++|...... +......+.++.++++|+
T Consensus 74 -~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~-----------~~k~~~~g~~df~~kak~ 141 (391)
T COG1453 74 -YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET-----------WEKIERLGVFDFLEKAKA 141 (391)
T ss_pred -ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH-----------HHHHHccChHHHHHHHHh
Confidence 8999999999963 344678899999999999999999999999985421 111122347999999999
Q ss_pred cCCcceeccCCCc-HHHHHHHHHHcCCCCeeeeeecCcccch-H---HHHHHHHHhCceEEEeccCCCCCCCCCCccccc
Q 020025 167 LGLTKSIGVSNFA-CKKLERLLATAKIPPAVNQVELNPVWQQ-K---KLRDFCEKKGIHITAYSPLGAKGTIWGTNRVME 241 (332)
Q Consensus 167 ~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~---~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~ 241 (332)
+|+||++|+|.|+ .+.+.+++.... ++++|+.||.+++. . +.+.+|.++|++|+.++|+.+ |.|... .
T Consensus 142 eGkIr~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~~~----v 214 (391)
T COG1453 142 EGKIRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLLYN----V 214 (391)
T ss_pred cCcEEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcccC----C
Confidence 9999999999999 466788887665 56899999988775 2 789999999999999999998 544221 2
Q ss_pred hHHHHHHHHHcC--CCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCC--C-CCHHHHHHHhccCCCC---CCCC
Q 020025 242 CQMLKEIANAKG--KSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYW--E-LSAEELQKIEQIPQYR---GSRS 311 (332)
Q Consensus 242 ~~~l~~la~~~~--~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~--~-L~~e~~~~i~~l~~~~---~~~~ 311 (332)
++++.+++++++ .||+.+|+||++++| .++++|+++++|++||++.++. + ||++|+..|+++.+.. -.-+
T Consensus 215 P~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~ 294 (391)
T COG1453 215 PEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVP 294 (391)
T ss_pred CHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999986 689999999999999 6889999999999999999864 4 9999888887765442 2233
Q ss_pred CCcccCCCC
Q 020025 312 EEHVSEDGP 320 (332)
Q Consensus 312 ~~~~~~~~~ 320 (332)
...|.-|-|
T Consensus 295 Ct~C~yC~P 303 (391)
T COG1453 295 CTGCRYCLP 303 (391)
T ss_pred CccccccCc
Confidence 455555555
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=8.1e-45 Score=313.53 Aligned_cols=282 Identities=20% Similarity=0.245 Sum_probs=227.7
Q ss_pred CCCcCceeeCCCCCccCeecccccccCC----CCChHHHHHHHHHHHHhCCCeEecCCCcC---ChHHHHHHHHHHHhcC
Q 020025 13 MVSIPEAPLGSTGKTIPLVGFGTAQFPF----GAATEAVKESVVHAIEVGYRHFDTAAIYQ---SEEPLGEAIAQALRLG 85 (332)
Q Consensus 13 ~~~m~~~~lg~tg~~vs~lglG~~~~~~----~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg---se~~vG~al~~~~~~g 85 (332)
|+-|+||.+|+||++||+||||++.++. .+ .++....+..|+.+|||+|||||.|| +|..+|.++++.
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~-~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v---- 93 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQLFGDED-EEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV---- 93 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhhcCCcc-hhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC----
Confidence 5689999999999999999999987654 35 77777777889999999999999999 799999999965
Q ss_pred CCCCCCcEEEEeccCC--------CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHH
Q 020025 86 LIKSRDELFITSKLWF--------GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGV 157 (332)
Q Consensus 86 ~~~~R~~~~I~tK~~~--------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 157 (332)
||+.+||+||++. -+++++.+++++++||+||++||+|++++|..+.... .+..+.|+
T Consensus 94 ---PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~-----------ld~vl~Et 159 (342)
T KOG1576|consen 94 ---PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPN-----------LDIVLNET 159 (342)
T ss_pred ---ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccccc-----------ccHHHHHH
Confidence 9999999999964 3678899999999999999999999999998765421 13458899
Q ss_pred HHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeee--eecCcccch-HHHHHHHHHhCceEEEeccCCCCCCCC
Q 020025 158 WEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQ--VELNPVWQQ-KKLRDFCEKKGIHITAYSPLGAKGTIW 234 (332)
Q Consensus 158 ~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~l~~~~~~~gi~v~a~~~l~~~G~l~ 234 (332)
+.+|+++|++||||+||++.+..+.+.+..+......+++- .+|++.+.. -..+++.+.+|++|+.-++++. |+|+
T Consensus 160 lp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt 238 (342)
T KOG1576|consen 160 LPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLT 238 (342)
T ss_pred HHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhh
Confidence 99999999999999999999999999998876554434443 455544433 3567888999999999999999 9998
Q ss_pred CCccc--c--------chHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCCCCH-HHHHHHh
Q 020025 235 GTNRV--M--------ECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWELSA-EELQKIE 301 (332)
Q Consensus 235 ~~~~~--~--------~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~L~~-e~~~~i~ 301 (332)
...+. - ......+.|++.++.+..+|+.|+++.+ .++++|+++.++++.|+++....||. .+...+.
T Consensus 239 ~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~ 318 (342)
T KOG1576|consen 239 NQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLR 318 (342)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHH
Confidence 54321 1 1356678888999999999999999998 78999999999999999986557776 3333332
Q ss_pred ccCCCC-CCCCCCc
Q 020025 302 QIPQYR-GSRSEEH 314 (332)
Q Consensus 302 ~l~~~~-~~~~~~~ 314 (332)
-+.+.. +..+..|
T Consensus 319 ~~r~~~~~~kn~~W 332 (342)
T KOG1576|consen 319 ILREILKETKNEEW 332 (342)
T ss_pred HHHHHhhhhccCCC
Confidence 223332 3455555
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.50 E-value=2.9e-07 Score=79.60 Aligned_cols=74 Identities=30% Similarity=0.554 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccc-hHHHHHHHHHhCceEEEecc
Q 020025 153 DYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ-QKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 153 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~l~~~~~~~gi~v~a~~~ 226 (332)
...+.|+.|++++.+|+|..||||.|+..+++++++.+.+.|..+|+++.-++. ..++..||.+++|.++.++-
T Consensus 154 ~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 154 SLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSD 228 (285)
T ss_pred HHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCC
Confidence 356799999999999999999999999999999999999999999999998776 58999999999999998763
No 19
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=87.17 E-value=29 Score=33.26 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHhCCC-eEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEecc----------CCCCCChhhHHHH
Q 020025 44 TEAVKESVVHAIEVGYR-HFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKL----------WFGHAHRQLVLPA 112 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin-~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~----------~~~~~~~~~i~~~ 112 (332)
.++-.+=++.|++.|-. ..|-+. .|.-..+-+.+-+ ...+-|.|-- ...+.+.+.+.+.
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~---------~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 76 IEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILD---------AVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHH---------cCCCCccCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 44444557999999976 556653 3322222222211 1112222210 1235577888888
Q ss_pred HHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCC
Q 020025 113 LQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 192 (332)
Q Consensus 113 le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 192 (332)
+|+..+ |=+|.+-+|.- -..+.++.+++.| |..|+-+-.-.-+..+.....
T Consensus 146 ie~qa~----dGVDfmTiH~G----------------------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~~- 196 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAG----------------------VLLEYVERLKRSG--RITGIVSRGGAILAAWMLHHH- 196 (423)
T ss_pred HHHHHH----hCCCEEEEccc----------------------hhHHHHHHHHhCC--CccCeecCcHHHHHHHHHHcC-
Confidence 888877 56899999964 3577888999999 467777767666666655433
Q ss_pred CCeeeeeecCcccch-HHHHHHHHHhCceEEEeccC
Q 020025 193 PPAVNQVELNPVWQQ-KKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 193 ~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~~l 227 (332)
.=||+..+ .++++.|++++|.+----.|
T Consensus 197 -------~ENPlye~fD~lLeI~~~yDVtlSLGDgl 225 (423)
T TIGR00190 197 -------KENPLYKNFDYILEIAKEYDVTLSLGDGL 225 (423)
T ss_pred -------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 23455544 67999999999988543333
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=85.71 E-value=29 Score=32.00 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCCh--HHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSE--EPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLG 121 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse--~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg 121 (332)
.++..+.++.+++.|++.|+.--.-..+ ...=+++++. -. ++-|.-+... ..+.+. ...+-+.|+.++
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-------~g-~~~l~vD~n~-~~~~~~-A~~~~~~l~~~~ 204 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-------AP-DARLRVDANQ-GWTPEE-AVELLRELAELG 204 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-------CC-CCeEEEeCCC-CcCHHH-HHHHHHHHHhcC
Confidence 5777788888999999999864211112 1222333332 12 5667777643 233332 223334445544
Q ss_pred CCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeee
Q 020025 122 LEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVE 200 (332)
Q Consensus 122 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 200 (332)
+.++-.|-.. .-++.+.+|++...|. ..|=+-++...+..+++....+ ++|..
T Consensus 205 -----l~~iEeP~~~-------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d--~v~~~ 258 (316)
T cd03319 205 -----VELIEQPVPA-------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD--GINIK 258 (316)
T ss_pred -----CCEEECCCCC-------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC--EEEEe
Confidence 4444555321 2366677888887776 4456668888898888866554 66666
Q ss_pred cCcc---cchHHHHHHHHHhCceEEEeccCCC
Q 020025 201 LNPV---WQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 201 ~~~~---~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
.... ..-.++..+|+++|+.++.++.+..
T Consensus 259 ~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 259 LMKTGGLTEALRIADLARAAGLKVMVGCMVES 290 (316)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEECchhh
Confidence 5443 2236789999999999998766543
No 21
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=85.61 E-value=8.7 Score=32.97 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHH
Q 020025 108 LVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLL 187 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 187 (332)
.+...+++.|....-+.+|.+.+..--. ........|+++..=|+=--|++.||..+..+.-+
T Consensus 59 Viq~Dld~gL~~f~d~sFD~VIlsqtLQ-----------------~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l 121 (193)
T PF07021_consen 59 VIQGDLDEGLADFPDQSFDYVILSQTLQ-----------------AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQL 121 (193)
T ss_pred EEECCHHHhHhhCCCCCccEEehHhHHH-----------------hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHH
Confidence 3455566677777777888887764311 12233444667777788888999999988876655
Q ss_pred HHcCCCCeeeeeecCcccch-------HHHHHHHHHhCceEEEeccCCC
Q 020025 188 ATAKIPPAVNQVELNPVWQQ-------KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 188 ~~~~~~~~~~q~~~~~~~~~-------~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
-..+--|+.-..+|.-++.. ++.-++|++.|+.|.-..++..
T Consensus 122 ~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 122 LLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 53343445555666554432 7889999999999999999887
No 22
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=85.18 E-value=20 Score=34.15 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=78.4
Q ss_pred hhHHHHHHHHH-----------HhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCcceec
Q 020025 107 QLVLPALQTSL-----------KNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNL-GLTKSIG 174 (332)
Q Consensus 107 ~~i~~~le~sL-----------~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iG 174 (332)
+.+++.++... +.+| +|++.||.-..+..+ .+...++..+..++..+. +.=--|+
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~----------~d~~~~e~a~~vk~V~~av~vPLIL~ 194 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKL----------DDKSPSEAAKVLEDVLQAVDVPIVIG 194 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccc----------cccCHHHHHHHHHHHHHhCCCCEEEe
Confidence 45666665544 4555 789999975332110 022355677777776443 3333444
Q ss_pred cC---CCcHHHHHHHHHHcCC-CCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHH
Q 020025 175 VS---NFACKKLERLLATAKI-PPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIAN 250 (332)
Q Consensus 175 vs---~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~ 250 (332)
=| ..+++.++++++...- .|.++-..... +-+.+...|+++|..++++++..- |. ...+.....
T Consensus 195 gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di-n~---------ak~Ln~kL~ 262 (389)
T TIGR00381 195 GSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI-NM---------QKTLNRYLL 262 (389)
T ss_pred CCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH-HH---------HHHHHHHHH
Confidence 34 5689999999998765 66666554331 235799999999999999998865 32 233444444
Q ss_pred HcCCCHHHH
Q 020025 251 AKGKSVAQV 259 (332)
Q Consensus 251 ~~~~s~~ql 259 (332)
++|+.+.++
T Consensus 263 ~~Gv~~eDI 271 (389)
T TIGR00381 263 KRGLMPRDI 271 (389)
T ss_pred HcCCCHHHE
Confidence 566554443
No 23
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=83.87 E-value=8 Score=37.52 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=45.9
Q ss_pred CCCCCChhhHHHHHHHHHHhhCCCcccEEee-ccCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHH-HHHcCCcceeccC
Q 020025 100 WFGHAHRQLVLPALQTSLKNLGLEHIDLYLI-HFPVSLKPGTGFPFSKEDI-EPLDYEGVWEAMEE-CQNLGLTKSIGVS 176 (332)
Q Consensus 100 ~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~-l~~~G~ir~iGvs 176 (332)
+.+..+.+.+.+.+++.++ |+.|+|.+|.| |-|....... ..+...+ ......+.++...+ |.+.|- +.+|+|
T Consensus 197 glP~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~--~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeis 272 (416)
T COG0635 197 GLPGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQR--KIKGKALPDEDEKADMYELVEELLEKAGY-RQYEIS 272 (416)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhh--cccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeec
Confidence 3346677888888888887 88999999998 4443211100 0000000 00112345555444 666677 999999
Q ss_pred CCcH
Q 020025 177 NFAC 180 (332)
Q Consensus 177 ~~~~ 180 (332)
||.-
T Consensus 273 nfa~ 276 (416)
T COG0635 273 NFAK 276 (416)
T ss_pred hhcC
Confidence 9987
No 24
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=82.89 E-value=14 Score=33.21 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=67.5
Q ss_pred HHHHHHcCCcceecc-CCCcHHHHHHHHHHcCCCCeeeeeecCcccch--HHHHHHHHHhCceEEEeccCCCCCCCCCCc
Q 020025 161 MEECQNLGLTKSIGV-SNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITAYSPLGAKGTIWGTN 237 (332)
Q Consensus 161 L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~ 237 (332)
|.+-.++|+. -+|+ .......+.+++...+++++++-.+-.+++.+ .+++..|+..|+..+.+-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4444445775 3443 33344455666777778888887777777665 5788899999999888877654
Q ss_pred cccchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCC
Q 020025 238 RVMECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYW 290 (332)
Q Consensus 238 ~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 290 (332)
...++.+|..| .+++|-..+++++++.+++..+
T Consensus 81 --------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12455666666 4566777777777777776655
No 25
>PRK08392 hypothetical protein; Provisional
Probab=82.63 E-value=32 Score=29.92 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCcC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 020025 45 EAVKESVVHAIEVGYRHFDTAAIYQ--SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL 122 (332)
Q Consensus 45 ~~~~~~l~~Ale~Gin~~Dta~~Yg--se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 122 (332)
....+.++.|.+.|++.+=.+++.. ....+-..+++..+... +.+=++++..-+...... ....++.+++ .
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~-~~~i~il~GiE~~~~~~~----~~~~~~~~~~--~ 86 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGE-ESEIVVLAGIEANITPNG----VDITDDFAKK--L 86 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhh-ccCceEEEeEEeeecCCc----chhHHHHHhh--C
Confidence 3467889999999999886666643 11122223322211110 011123333333222211 2233344443 4
Q ss_pred CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC----C----cHHHHHHHHHHcCCCC
Q 020025 123 EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN----F----ACKKLERLLATAKIPP 194 (332)
Q Consensus 123 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~----~~~~l~~~~~~~~~~~ 194 (332)
||+ +.-+|.... + .......+.+.++.+.|.+.-+|=-. + ..+.++++++...-.-
T Consensus 87 D~v-I~SvH~~~~--~-------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g 150 (215)
T PRK08392 87 DYV-IASVHEWFG--R-------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG 150 (215)
T ss_pred CEE-EEEeecCcC--C-------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC
Confidence 555 566684311 1 12456778888888889876665321 1 1233344433321111
Q ss_pred eeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHH
Q 020025 195 AVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQV 259 (332)
Q Consensus 195 ~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ql 259 (332)
.+..++-....+..++++.|++.|+.++.-| =+. . +..+-......+++++.|.++.++
T Consensus 151 ~~lEiNt~~~~p~~~~l~~~~~~G~~~~igS-DAH-~----~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 151 KAFEISSRYRVPDLEFIRECIKRGIKLTFAS-DAH-R----PEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeC-CCC-C----hHHCCcHHHHHHHHHHcCCCHHHe
Confidence 1222222222334678999999998765433 322 1 111212356677888888877654
No 26
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=82.05 E-value=50 Score=31.80 Aligned_cols=89 Identities=15% Similarity=0.250 Sum_probs=63.9
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHH
Q 020025 103 HAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKK 182 (332)
Q Consensus 103 ~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 182 (332)
+.+.+.+.+.+|+..+ |=+|.+-+|.- -..+.++.+++.|+ ..|+-+-.-.-
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcG----------------------i~~~~~~~~~~~~R--~~giVSRGGs~ 190 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCG----------------------VTRETLERLKKSGR--IMGIVSRGGSF 190 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc----------------------hhHHHHHHHHhcCC--ccCeecCCHHH
Confidence 5677888888888877 66899999964 25678889999885 66777767666
Q ss_pred HHHHHHHcCCCCeeeeeecCcccch-HHHHHHHHHhCceEEEeccC
Q 020025 183 LERLLATAKIPPAVNQVELNPVWQQ-KKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~~l 227 (332)
+..+..... .=||+..+ .++++.|++++|.+----.|
T Consensus 191 ~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlSLGDgl 228 (431)
T PRK13352 191 LAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLSLGDGL 228 (431)
T ss_pred HHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCc
Confidence 666655433 23455544 67999999999988543333
No 27
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=81.23 E-value=21 Score=32.41 Aligned_cols=103 Identities=12% Similarity=-0.026 Sum_probs=69.2
Q ss_pred HHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch--HHHHHHHHHhCceEEEeccCCCCCCCCCCcc
Q 020025 161 MEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITAYSPLGAKGTIWGTNR 238 (332)
Q Consensus 161 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~ 238 (332)
|.+-.++|+.-.-.........+.+++...+++++++-.+-++++.+ ..++..++..|+..+.+-|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 34444457754322334444455566666778888887787777765 4678889999998888777543
Q ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCCC
Q 020025 239 VMECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYWE 291 (332)
Q Consensus 239 ~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~~ 291 (332)
...++.+|..| ..++|-..|+++.++.+++..++
T Consensus 80 -------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 80 -------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYP 115 (267)
T ss_pred -------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCC
Confidence 13456777777 56677788888888888877653
No 28
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=80.72 E-value=11 Score=34.41 Aligned_cols=115 Identities=14% Similarity=0.239 Sum_probs=76.4
Q ss_pred HHHHHHHcCCcceeccCCCcHHHHHHHHHHcC--C----CCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCC
Q 020025 160 AMEECQNLGLTKSIGVSNFACKKLERLLATAK--I----PPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTI 233 (332)
Q Consensus 160 ~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~--~----~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l 233 (332)
.++.|....++-.+-=++.+.+.+..+.+... + .+..+.+-+-...||+.+.+++++-++-++.-+.-.+
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs---- 221 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS---- 221 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc----
Confidence 34444445566666666666666665544321 1 1233444444456678899999998887776333222
Q ss_pred CCCccccchHHHHHHHHHcCC------CHHHHHHHHHHhCC-CEEEeCCCCHHHHHHhH
Q 020025 234 WGTNRVMECQMLKEIANAKGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 285 (332)
Q Consensus 234 ~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (332)
.-..|.++|++++. ++.++...|..... +.+..|+|+|+.+.+.+
T Consensus 222 -------NT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 222 -------NTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred -------hHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 34689999999874 78999999998776 78889999999876543
No 29
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=78.88 E-value=19 Score=33.55 Aligned_cols=118 Identities=21% Similarity=0.200 Sum_probs=71.3
Q ss_pred HHHHhhCCCcccEEeecc-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcce-eccCCC---cHHHHHHHHHH
Q 020025 115 TSLKNLGLEHIDLYLIHF-PVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKS-IGVSNF---ACKKLERLLAT 189 (332)
Q Consensus 115 ~sL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~ 189 (332)
+.-+.+|.|+||+-+.-. |+.. +...++....++...+.=.+-- |..|.. +++.++++++.
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~--------------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~ 148 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGK--------------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEA 148 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccc--------------cchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 444578988888875322 2110 1124445555555544433333 655543 78999999998
Q ss_pred cC-CCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHH
Q 020025 190 AK-IPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQV 259 (332)
Q Consensus 190 ~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ql 259 (332)
.. -++.++-+... +-+.+.+.|+++|..+++.++..- -....+...+.++|+++.++
T Consensus 149 ~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl----------n~ak~L~~~l~~~Gi~~edI 206 (319)
T PRK04452 149 AEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI----------NLAKQLNILLTELGVPRERI 206 (319)
T ss_pred hCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH----------HHHHHHHHHHHHcCCCHHHE
Confidence 76 34666655432 236799999999999999876542 22355666666777655443
No 30
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.27 E-value=26 Score=31.44 Aligned_cols=96 Identities=14% Similarity=-0.011 Sum_probs=62.7
Q ss_pred HcCCcceecc-CCCcHHHHHHHHHHcCCCCeeeeeecCcccch--HHHHHHHHHhCceEEEeccCCCCCCCCCCccccch
Q 020025 166 NLGLTKSIGV-SNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMEC 242 (332)
Q Consensus 166 ~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~ 242 (332)
++|+. .+|+ ++.....+.+++...+++++++-.+-.+++.+ ..++..|+..|+..+.+-|-..
T Consensus 8 ~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------- 73 (249)
T TIGR03239 8 LARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------- 73 (249)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-------------
Confidence 34664 3443 33344455666667778888887777777665 5778888999998888776643
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCC
Q 020025 243 QMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYW 290 (332)
Q Consensus 243 ~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 290 (332)
...++.+|..| ..++|-..|.++.++.+++..+
T Consensus 74 ---------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ---------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ---------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12345566666 4566677777777777766554
No 31
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=76.80 E-value=17 Score=33.47 Aligned_cols=107 Identities=12% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCcceeccCCCcHHHHHHHHHHcC--CC--Ce--eeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccc
Q 020025 168 GLTKSIGVSNFACKKLERLLATAK--IP--PA--VNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVME 241 (332)
Q Consensus 168 G~ir~iGvs~~~~~~l~~~~~~~~--~~--~~--~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~ 241 (332)
.++-.+-=++.+.+.+.++.+... ++ .. .+.+-+-...|++.+.+++++-++-++.-+.-.+ .
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----------N 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS-----------N 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc-----------c
Confidence 556666666666666666554322 11 01 2222333334567888999988887776333322 2
Q ss_pred hHHHHHHHHHcCC------CHHHHHHHHHHhCC-CEEEeCCCCHHHHHHhH
Q 020025 242 CQMLKEIANAKGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 285 (332)
Q Consensus 242 ~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (332)
-..|.++|++++. ++.++...|..... +.+..|+|+|+.+.+.+
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 4688999999874 78999999997666 78889999998765543
No 32
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.72 E-value=17 Score=34.86 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC-CChhhHHHHHHHHHHhhCC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGH-AHRQLVLPALQTSLKNLGL 122 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~-~~~~~i~~~le~sL~~Lg~ 122 (332)
......++++|++.|++++|||........+.+..+ +..+.+..-++... .+--....++++-.. .+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~----------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK----------KAGITAVLGCGFDPGITNVLAAYAAKELFD--EI 145 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH----------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--cc
Confidence 345568999999999999999977655333333332 33344555554322 211122222332222 58
Q ss_pred CcccEEeeccCCCC
Q 020025 123 EHIDLYLIHFPVSL 136 (332)
Q Consensus 123 d~iDl~~lH~p~~~ 136 (332)
+++|+|..+.|+..
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999988765
No 33
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=76.66 E-value=35 Score=30.80 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=65.9
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLE 184 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 184 (332)
+.+.+.+..++.. .-|.|.||+=.=-.+ ....+.+...++.+++.-.+ -|.+-+++++.++
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~~~~-----------------~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~e 83 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAGTAV-----------------EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIE 83 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCc-----------------hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHH
Confidence 4456666655554 579999998642111 01144455566666654233 4889999999999
Q ss_pred HHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEecc
Q 020025 185 RLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 185 ~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~ 226 (332)
.+++...-.+.+|-+.... .+...+++.++++|+.++....
T Consensus 84 aaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 84 AGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 9999854455677554321 2235789999999999998654
No 34
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=74.88 E-value=59 Score=31.24 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHhCCC-eEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEecc----------CCCCCChhhHHHH
Q 020025 44 TEAVKESVVHAIEVGYR-HFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKL----------WFGHAHRQLVLPA 112 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin-~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~----------~~~~~~~~~i~~~ 112 (332)
.+.-.+=++.|.+.|-. ..|-+.. |.-..+-+.+- .+..+-|.|-- ...+.+.+.+.+.
T Consensus 75 ~~~E~~K~~~A~~~GADtvMDLStg-gdl~~iR~~il---------~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ 144 (420)
T PF01964_consen 75 IEEELEKLKIAEKAGADTVMDLSTG-GDLDEIRRAIL---------ENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDV 144 (420)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE---S-TTHHHHHHHHH---------HT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCC-CCHHHHHHHHH---------HhCCCccccchHHHHHHHhCCChhhCCHHHHHHH
Confidence 45555667899999976 5565532 22222333322 23344454421 1235677888888
Q ss_pred HHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCC
Q 020025 113 LQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 192 (332)
Q Consensus 113 le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 192 (332)
+++..+ +=+|.+-+|.- -..+.++.+++.|+ ..|+-+-.-.-+..++...+
T Consensus 145 ie~qa~----~GVDfmtiH~g----------------------it~~~~~~~~~~~R--~~giVSRGGs~l~~WM~~n~- 195 (420)
T PF01964_consen 145 IEKQAK----DGVDFMTIHCG----------------------ITRETLERLKKSGR--IMGIVSRGGSILAAWMLHNG- 195 (420)
T ss_dssp HHHHHH----HT--EEEE-TT------------------------GGGGGGGT--TS--SS----HHHHHHHHHHHHHT-
T ss_pred HHHHHH----cCCCEEEEccc----------------------hhHHHHHHHhhhcc--ccCccccchHHHHHHHHhcC-
Confidence 888887 45899999974 24556777888876 45666656666666554433
Q ss_pred CCeeeeeecCcccch-HHHHHHHHHhCceEEEeccCCC
Q 020025 193 PPAVNQVELNPVWQQ-KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 193 ~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
.=|++..+ .++++.|++++|.+-.--.|--
T Consensus 196 -------~ENPly~~fD~lLeI~k~yDVtLSLGDglRP 226 (420)
T PF01964_consen 196 -------KENPLYEHFDRLLEIAKEYDVTLSLGDGLRP 226 (420)
T ss_dssp -------S--HHHHTHHHHHHHHTTTT-EEEE--TT--
T ss_pred -------CcCcHHHhHHHHHHHHHHhCeeEecccccCC
Confidence 12444443 6799999999999876555544
No 35
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=74.83 E-value=8.4 Score=35.23 Aligned_cols=108 Identities=16% Similarity=0.243 Sum_probs=66.3
Q ss_pred cCCcceeccCCCcHHHHHHHHHHcC--CCC----eeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCcccc
Q 020025 167 LGLTKSIGVSNFACKKLERLLATAK--IPP----AVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVM 240 (332)
Q Consensus 167 ~G~ir~iGvs~~~~~~l~~~~~~~~--~~~----~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~ 240 (332)
.+++-.+.=++++.+.+.++.+... ++- ..+.+-+-...|++.+.+++++-++-++.-+.-. -
T Consensus 154 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S-----------s 222 (281)
T PF02401_consen 154 PKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS-----------S 222 (281)
T ss_dssp TTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT------------H
T ss_pred CCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC-----------c
Confidence 3577777777888777766655432 221 1233333333456788888888887776632222 2
Q ss_pred chHHHHHHHHHcCC------CHHHHHHHHHHhCC-CEEEeCCCCHHHHHHhH
Q 020025 241 ECQMLKEIANAKGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 285 (332)
Q Consensus 241 ~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (332)
.-..|.++|++++. ++.++...|..... +.+..|+|+|+.+-+.+
T Consensus 223 NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 223 NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 34689999999874 78999999999887 78899999999877654
No 36
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=74.00 E-value=23 Score=32.41 Aligned_cols=107 Identities=10% Similarity=0.114 Sum_probs=70.9
Q ss_pred CCcceeccCCCcHHHHHHHHHHcC--CC--CeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchH
Q 020025 168 GLTKSIGVSNFACKKLERLLATAK--IP--PAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQ 243 (332)
Q Consensus 168 G~ir~iGvs~~~~~~l~~~~~~~~--~~--~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~ 243 (332)
.++-.+-=++.+.+.+.++++... ++ ...+.+.+-...|++.+.+++++-++-++.-+.-.+ .-.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----------NT~ 225 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSS-----------NTQ 225 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc-----------cHH
Confidence 555555555666666665554322 11 112333344445667888999998887776333322 246
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHhCC-CEEEeCCCCHHHHHHhH
Q 020025 244 MLKEIANAKGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKENL 285 (332)
Q Consensus 244 ~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl 285 (332)
.|.++|++.+. ++.++...|..... +.+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 88999998874 78999999998777 78889999999776553
No 37
>PRK08609 hypothetical protein; Provisional
Probab=73.40 E-value=1.1e+02 Score=31.06 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhCCCeEecCCCcC--------ChHHHHHHH---HHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHH
Q 020025 46 AVKESVVHAIEVGYRHFDTAAIYQ--------SEEPLGEAI---AQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQ 114 (332)
Q Consensus 46 ~~~~~l~~Ale~Gin~~Dta~~Yg--------se~~vG~al---~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le 114 (332)
...+.++.|.+.|+.+|=.++++. +...+-..+ +.. .+.. ..=++++..-+.... +....-.+
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~~--~~i~Il~GiEv~i~~---~g~~d~~~ 423 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEKY--PEIDILSGIEMDILP---DGSLDYDD 423 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHhc--CCCeEEEEEEEeecC---CcchhhcH
Confidence 356699999999999887777752 222222222 221 1111 111344444443211 12222233
Q ss_pred HHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC------Cc--HHHHHHH
Q 020025 115 TSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN------FA--CKKLERL 186 (332)
Q Consensus 115 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~------~~--~~~l~~~ 186 (332)
..|+. .||+ +.-+|++.. ...+++++.+.++.+.|.+.-||=-. +. ...++++
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~----------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i 484 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS----------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQL 484 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC----------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHH
Confidence 34543 4666 667786521 12567788899999999887776333 11 2334444
Q ss_pred HHHcCCCCeeeeeecCccc--chHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHH
Q 020025 187 LATAKIPPAVNQVELNPVW--QQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVS 260 (332)
Q Consensus 187 ~~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qla 260 (332)
++.+.-.-.+.|++-+.+. ....++..|.+.|+.++. ++=+. .+..+-..+....++++-+.++.++.
T Consensus 485 ~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i-gSDAH-----~~~~l~~~~~~v~~ar~~~~~~~~v~ 554 (570)
T PRK08609 485 IELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAI-NTDAH-----HTEMLDDMKYGVATARKGWIQKDRVI 554 (570)
T ss_pred HHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEE-ECCCC-----ChhhhCcHHHHHHHHHHcCCCHHHcc
Confidence 4432111136666665542 236789999999997544 33333 12333345667778888777776654
No 38
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=72.82 E-value=67 Score=28.32 Aligned_cols=172 Identities=9% Similarity=0.025 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE 123 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d 123 (332)
.....+++..|.+.|+..+=.+++...........+.. .+=+++...-+. ...++. ++..+++. .+
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~~i~Il~GiEi~--~~~~~~----~~~~~~~~-~~ 80 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------LGFEIFRGVEIV--ASNPSK----LRGLVGKF-RK 80 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------cCCcEEeeEEEe--cCCHHH----HHHHHHhc-cC
Confidence 45678999999999999776555543110000111111 111122222222 222333 33333332 23
Q ss_pred cccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCC-------cHHHHHHHHHHcCCCCee
Q 020025 124 HIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNF-------ACKKLERLLATAKIPPAV 196 (332)
Q Consensus 124 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~~ 196 (332)
.+|++.+| |. .+.+. +.+.+.+.|.-||--.. ....+..+.+ .+ .+
T Consensus 81 ~~d~v~v~-~~-------------------~~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~-~g---v~ 133 (237)
T PRK00912 81 KVDVLAVH-GG-------------------DEKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAAR-NN---VA 133 (237)
T ss_pred cccEEEEe-CC-------------------CHHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHH-CC---eE
Confidence 57888888 21 11222 35778888888886542 2222222222 22 34
Q ss_pred eeeecCccc------------chHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHH
Q 020025 197 NQVELNPVW------------QQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLR 262 (332)
Q Consensus 197 ~q~~~~~~~------------~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~ 262 (332)
..++++.+. +...++..|++.|+.++.-|--.. +..+-.......+++..|.+..++--.
T Consensus 134 lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~~~~ 205 (237)
T PRK00912 134 IEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEALKA 205 (237)
T ss_pred EEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 555555431 114689999999988876432221 122334567888888888877665443
No 39
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=68.95 E-value=27 Score=31.86 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=61.9
Q ss_pred eeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCC------CHHHHHHHHHHhCC
Q 020025 195 AVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGK------SVAQVSLRWVYQQG 268 (332)
Q Consensus 195 ~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~ 268 (332)
..+-+.|-.-+||+.+.+.+.+-++-++.-++-.+ ...+|.++|++.|. ++.++=..|.....
T Consensus 191 ~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSS-----------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~ 259 (294)
T COG0761 191 PFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSS-----------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK 259 (294)
T ss_pred cccccchhhhhHHHHHHHHhhcCCEEEEECCCCCc-----------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc
Confidence 34445555556778888889998888887555544 35789999999986 68898899998877
Q ss_pred -CEEEeCCCCHHHHHHhH
Q 020025 269 -VSLVVKSFNKERMKENL 285 (332)
Q Consensus 269 -~~~i~g~~~~~~l~~nl 285 (332)
+.+-.|+|+|+.|-+++
T Consensus 260 ~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 260 TVGVTAGASTPDWLVQEV 277 (294)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 77889999999887764
No 40
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=68.92 E-value=1.2e+02 Score=30.25 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=62.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCC
Q 020025 68 YQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKE 147 (332)
Q Consensus 68 Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 147 (332)
+|+++-+-+++++..... +.+-++|.+-+ .++-|-..++...++++.+.++++.++.|.....
T Consensus 67 ~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC-----~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~--------- 129 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF---KPDLIVVTPSC-----TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRK--------- 129 (511)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEEeCCC-----hHHHhccCHHHHHHHhccCCCcEEEecCCCcccc---------
Confidence 677778888887764432 34456666655 2344555556666666655688999998865432
Q ss_pred CCCCCCHHHHHHHHHH-H----------HHcCCcceeccCCC------cHHHHHHHHHHcCCC
Q 020025 148 DIEPLDYEGVWEAMEE-C----------QNLGLTKSIGVSNF------ACKKLERLLATAKIP 193 (332)
Q Consensus 148 ~~~~~~~~~~~~~L~~-l----------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~ 193 (332)
. ......++.++-+ + .+++.|.-||.++. +..++.++++..++.
T Consensus 130 ~--~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~ 190 (511)
T TIGR01278 130 E--NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIE 190 (511)
T ss_pred h--hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCe
Confidence 0 0011223322221 1 13466888998763 456777888876655
No 41
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=67.09 E-value=73 Score=31.63 Aligned_cols=128 Identities=10% Similarity=0.090 Sum_probs=75.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceeccCC----CcHHHHHHHHH----HcCCCCe-eeeeecCcccchHHHHHHHHHhCc
Q 020025 149 IEPLDYEGVWEAMEECQNLGLTKSIGVSN----FACKKLERLLA----TAKIPPA-VNQVELNPVWQQKKLRDFCEKKGI 219 (332)
Q Consensus 149 ~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~~~~~----~~~~~~~-~~q~~~~~~~~~~~l~~~~~~~gi 219 (332)
.....++.+++.++.++++..++.+-+.+ .+.+.+.++++ ....++. ..+...+...+..++++..++.|+
T Consensus 219 ~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 219 YRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred eecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 33456889999999998876688876654 23444444433 2212221 233344444445789999999998
Q ss_pred eEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHHHHHhCC----CEEEeCC--CCHHHHHHhHcc
Q 020025 220 HITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLRWVYQQG----VSLVVKS--FNKERMKENLDI 287 (332)
Q Consensus 220 ~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~----~~~i~g~--~~~~~l~~nl~a 287 (332)
.-+..+.=.+ ..+.+..+.+.+...-..-+++.+.+.| ...|+|. .+.+.+++.++.
T Consensus 299 ~~v~iGiES~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~ 361 (497)
T TIGR02026 299 VHISLGTEAA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQ 361 (497)
T ss_pred cEEEEccccC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHH
Confidence 7665443332 2344454444333333445677777777 3457774 577888777665
No 42
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.80 E-value=96 Score=27.77 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=67.9
Q ss_pred CChhhHHHHHHHHHHhhCCCcccEEee-ccCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHcCCcceeccCCCcHH
Q 020025 104 AHRQLVLPALQTSLKNLGLEHIDLYLI-HFPVSLKPGTGFPFSKEDIE-PLDYEGVWEAMEECQNLGLTKSIGVSNFACK 181 (332)
Q Consensus 104 ~~~~~i~~~le~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 181 (332)
.+.+.+.+..++.+ .-|.|.||+=.- -+|... ... ....+.+...++.+++.-.+ -|.+.+++++
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-----------~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~ 87 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAE-----------PVSVEEELERVIPVLRALAGEPDV-PISVDTFNAE 87 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-----------cCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHH
Confidence 35566666666665 478899998531 223210 000 01234455666777665333 3899999999
Q ss_pred HHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCC
Q 020025 182 KLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLG 228 (332)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~ 228 (332)
.++++++.+ .+.+|-+ +......++++.++++|..++....-+
T Consensus 88 v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 88 VAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCC
Confidence 999999876 3455543 333223688999999999999876443
No 43
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=66.64 E-value=71 Score=28.74 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEe-eccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYL-IHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKL 183 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 183 (332)
+.+.+.+..++.+ +-|.|.||+=. --+|....- .. ....+.+...+..+++.-.+. |.+-+++++.+
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i--------~~--~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~ 89 (257)
T cd00739 22 SLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPV--------SV--EEELERVIPVLEALRGELDVL-ISVDTFRAEVA 89 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCC--------CH--HHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHH
Confidence 4455555555554 46889999853 222322100 00 011233334456666653443 89999999999
Q ss_pred HHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEecc
Q 020025 184 ERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~ 226 (332)
+++++.+ ...+|-+ +.......+++.++++|..++.+..
T Consensus 90 e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 90 RAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 9999874 3345533 3333236889999999999999543
No 44
>PRK07945 hypothetical protein; Provisional
Probab=65.41 E-value=1.2e+02 Score=28.42 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC--------ChHHHHHHHHHH--HhcCCCCCCC-cEEEEeccCCC-CCChhhHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ--------SEEPLGEAIAQA--LRLGLIKSRD-ELFITSKLWFG-HAHRQLVLP 111 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg--------se~~vG~al~~~--~~~g~~~~R~-~~~I~tK~~~~-~~~~~~i~~ 111 (332)
.....+.++.|.+.|+..+=.+++.. +...+-+.++.. +++. .++ ++++..-+... +...+.
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k---y~~I~Il~GiE~d~~~~g~~~~--- 183 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE---LAPFRILTGIEVDILDDGSLDQ--- 183 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh---cCCceEEEEeEecccCCCCcch---
Confidence 45577899999999999775554432 122222222221 0111 223 23333333221 121222
Q ss_pred HHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceecc
Q 020025 112 ALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGV 175 (332)
Q Consensus 112 ~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 175 (332)
.++.|+. .||+ +.-+|+... .+..+..+.|.++.+.+.+..+|=
T Consensus 184 -~~~~l~~--~D~v-IgSvH~~~~----------------~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 184 -EPELLDR--LDVV-VASVHSKLR----------------MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred -hHHHHHh--CCEE-EEEeecCCC----------------CCHHHHHHHHHHHhcCCCCeEEec
Confidence 2333433 4655 666787522 123556788888888888877773
No 45
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=65.33 E-value=2.7 Score=39.48 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=33.2
Q ss_pred cCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCccc-c-hHHHHHHHHHhCce
Q 020025 167 LGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVW-Q-QKKLRDFCEKKGIH 220 (332)
Q Consensus 167 ~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-~-~~~l~~~~~~~gi~ 220 (332)
-|+|||+||--++++.+.++.....-. +..+....+|. + +..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~-dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEK-DLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHH-HHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 499999999999999998887654421 22222222221 1 24566666666654
No 46
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=65.15 E-value=75 Score=28.41 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=61.9
Q ss_pred HHHHcCCcceec--cCCCcHHHHHHHHHHcCCCCeeeeeecCcccch--HHHHHHHHHhCceEEEeccCCCCCCCCCCcc
Q 020025 163 ECQNLGLTKSIG--VSNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITAYSPLGAKGTIWGTNR 238 (332)
Q Consensus 163 ~l~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~ 238 (332)
+..++|+. -+| +...++..++ .+...+++.+++-.+-++++.+ ..++..|+..|..++.+-|-..
T Consensus 5 ~~l~~g~~-~~g~~~~~~~p~~~e-~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~--------- 73 (249)
T TIGR02311 5 QALKEGQP-QIGLWLGLADPYAAE-ICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD--------- 73 (249)
T ss_pred HHHHCCCc-eEEEEEeCCCcHHHH-HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC---------
Confidence 34445775 243 3333444444 4455667877777776765543 3567777777887777655433
Q ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHcccCC
Q 020025 239 VMECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIFYW 290 (332)
Q Consensus 239 ~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~~~ 290 (332)
+ .-++.++..| ..++|-..+++++++.+++..+
T Consensus 74 -----------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -----------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -----------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1456777777 5677888888888888887664
No 47
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=64.68 E-value=1.4e+02 Score=28.90 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=62.4
Q ss_pred CcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC-----CcccEEeeccCCCCCCCCC
Q 020025 67 IYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL-----EHIDLYLIHFPVSLKPGTG 141 (332)
Q Consensus 67 ~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~-----d~iDl~~lH~p~~~~~~~~ 141 (332)
.||.+.-+-+++++..+.- +.+-++|.|-+.+. -|-..++...+++.. ..+.++.++.|.....
T Consensus 62 V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~-----liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~--- 130 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTE-----TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS--- 130 (428)
T ss_pred eECcHHHHHHHHHHHHHhc---CCCEEEEECCcchh-----hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc---
Confidence 4677888888888875542 44557777766432 222234444444432 1366788888765421
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-H------HHcCCcceeccCCC---cHHHHHHHHHHcCCCCe
Q 020025 142 FPFSKEDIEPLDYEGVWEAMEE-C------QNLGLTKSIGVSNF---ACKKLERLLATAKIPPA 195 (332)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~L~~-l------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~ 195 (332)
. ....+.++++|-+ + ++.++|.-||-++. +.+++.++++..++++.
T Consensus 131 ------~--~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~ 186 (428)
T cd01965 131 ------H--ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPI 186 (428)
T ss_pred ------H--HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEE
Confidence 0 0112334444433 2 24567888876654 35778888887776643
No 48
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=64.07 E-value=1.1e+02 Score=27.52 Aligned_cols=107 Identities=11% Similarity=0.010 Sum_probs=65.1
Q ss_pred CChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHH
Q 020025 104 AHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKL 183 (332)
Q Consensus 104 ~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 183 (332)
.+++.+.+..++.++ -|.|+||+=. .|... -..++.-+.+..+++.-. .-|.+-+++++.+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~---------------~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~ 83 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGL---------------DGVSAMKWLLNLLATEPT-VPLMLDSTNWEVI 83 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCC---------------CHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHH
Confidence 456777777777775 5999999854 22110 012233333333332212 2388889999999
Q ss_pred HHHHHHcCCCCeeeeeecCccc-chHHHHHHHHHhCceEEEeccCCC
Q 020025 184 ERLLATAKIPPAVNQVELNPVW-QQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~~-~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
+++++...-...+|-+.....+ +...+++.++++|..++.+..-..
T Consensus 84 e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~ 130 (252)
T cd00740 84 EAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQ 130 (252)
T ss_pred HHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCC
Confidence 9999874334456654432211 236788999999999998765433
No 49
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=61.19 E-value=1.4e+02 Score=27.85 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHhCCCeEec--CCCcC------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDT--AAIYQ------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQT 115 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dt--a~~Yg------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~ 115 (332)
.++..+.++.+.+.|++.|-. +..|. -...+=+++++. -.+++.|....+. ..+.+.. .+
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~a----~~ 207 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAEA----IR 207 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHHH----HH
Confidence 677778888889999998764 32331 011122334432 2345556656532 2233332 23
Q ss_pred HHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCC
Q 020025 116 SLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPP 194 (332)
Q Consensus 116 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~ 194 (332)
.+++|. ..++.++..|... +.++.+.++++.-.+. ..|=+.+++..+.++++...+
T Consensus 208 ~~~~l~--~~~i~~iEqP~~~-------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~-- 264 (357)
T cd03316 208 LARALE--EYDLFWFEEPVPP-------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV-- 264 (357)
T ss_pred HHHHhC--ccCCCeEcCCCCc-------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC--
Confidence 333342 2345566666321 2366677788776565 455666789999999886654
Q ss_pred eeeeeecCcc---cchHHHHHHHHHhCceEEEec
Q 020025 195 AVNQVELNPV---WQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 195 ~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~ 225 (332)
+++|+..... .+-..+...|+++|+.++.++
T Consensus 265 d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 265 DIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred CEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 4666654443 233688999999999988765
No 50
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=61.19 E-value=5.9 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=26.7
Q ss_pred CcccccccCCCcCceeeCCCCCccCeecccccc
Q 020025 5 SSSLKMKTMVSIPEAPLGSTGKTIPLVGFGTAQ 37 (332)
Q Consensus 5 ~~~~~~~~~~~m~~~~lg~tg~~vs~lglG~~~ 37 (332)
..++...+++.-..+.|+++|+.||.+-+|++.
T Consensus 4 ~tqPLaqalPfs~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 4 QTQPLAQALPFSLGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred CCCchhhhCCccccccccccccCCceeeecchH
Confidence 345566677888889999999999999988864
No 51
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=60.13 E-value=42 Score=34.60 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=72.9
Q ss_pred HHHHHcCCcceeccCCCcHHHHHHHHHHcC--CC--CeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCc
Q 020025 162 EECQNLGLTKSIGVSNFACKKLERLLATAK--IP--PAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTN 237 (332)
Q Consensus 162 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~--~~--~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~ 237 (332)
+.+....++-.+-=++.+.+.+..+++... ++ ...+.+.+-...|++.+.++|++-++-++.-+.-.+
T Consensus 148 ~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss-------- 219 (647)
T PRK00087 148 EKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS-------- 219 (647)
T ss_pred hhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc--------
Confidence 333334555555556666666655544322 11 123344444445668889999988887776333322
Q ss_pred cccchHHHHHHHHHcCC------CHHHHHHHHHHhCC-CEEEeCCCCHHHHHHh
Q 020025 238 RVMECQMLKEIANAKGK------SVAQVSLRWVYQQG-VSLVVKSFNKERMKEN 284 (332)
Q Consensus 238 ~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~-~~~i~g~~~~~~l~~n 284 (332)
.-..|.++|++.+. ++.++.-.|.-... +.+..|+|+|+.+-+.
T Consensus 220 ---Nt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 220 ---NTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred ---cHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 34689999998874 78999999988776 7888999999866444
No 52
>PRK07094 biotin synthase; Provisional
Probab=59.63 E-value=1.1e+02 Score=28.17 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCcceeccCC-----CcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEecc
Q 020025 152 LDYEGVWEAMEECQNLGLTKSIGVSN-----FACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 152 ~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~ 226 (332)
+..+++++.++.+++.| ++.|.++. +..+.+.++++...-.+. ..+.+++.....+.+...++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 35788999999988876 56665441 345666666544321111 122334333446788889998887765332
Q ss_pred CCCCCCCCCCccccchHHHHHHHHHcCCCHHHH--HHHHHHhCC----CEEEeCC--CCHHHHHHhHccc
Q 020025 227 LGAKGTIWGTNRVMECQMLKEIANAKGKSVAQV--SLRWVYQQG----VSLVVKS--FNKERMKENLDIF 288 (332)
Q Consensus 227 l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~ql--al~~~l~~~----~~~i~g~--~~~~~l~~nl~a~ 288 (332)
=.. ..+.+..+.+ +.+..+. +++++...| ...++|. .+.+++.+.+..+
T Consensus 148 Es~-----------~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l 204 (323)
T PRK07094 148 ETA-----------DKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFL 204 (323)
T ss_pred ccC-----------CHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHH
Confidence 221 2334444443 3444443 577777776 4567884 5788887776654
No 53
>PRK13796 GTPase YqeH; Provisional
Probab=59.31 E-value=1.6e+02 Score=27.88 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhC---CCeEecCCCcCC-hHHHHHHHHHHHhcCCCCCCCcEEEEeccCC--CCCChhhHHHHHHHHH
Q 020025 44 TEAVKESVVHAIEVG---YRHFDTAAIYQS-EEPLGEAIAQALRLGLIKSRDELFITSKLWF--GHAHRQLVLPALQTSL 117 (332)
Q Consensus 44 ~~~~~~~l~~Ale~G---in~~Dta~~Ygs-e~~vG~al~~~~~~g~~~~R~~~~I~tK~~~--~~~~~~~i~~~le~sL 117 (332)
.++..++++..-+.- +-.+|..+.-++ ...+.+.. + .+.-++|.+|.-. .....+.+.+.++...
T Consensus 56 ~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~------~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 56 DDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV------G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh------C---CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 556666666665544 346786665443 22222221 2 4566889999842 2223455666667667
Q ss_pred HhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHH
Q 020025 118 KNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERL 186 (332)
Q Consensus 118 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 186 (332)
+.+|....|++.+-.-. ...+.++++.+.+..+.+.+-.+|.+|..-..+...
T Consensus 127 k~~g~~~~~v~~vSAk~----------------g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 127 KELGLRPVDVVLISAQK----------------GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred HhcCCCcCcEEEEECCC----------------CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 77786555777665432 123778888888887788899999999886554433
No 54
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=58.82 E-value=90 Score=27.20 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEeccCCC
Q 020025 158 WEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 158 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
++.+.+|.+...+. ..+=|.++...+..+++...+ +++|+..+.. ..-.++..+|+++|+.++.++.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~--d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAV--DILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 56677778777665 445555677777777765544 4666665443 2236789999999999999877654
No 55
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=58.77 E-value=3e+02 Score=30.81 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=42.7
Q ss_pred eccCCCcHHHHHHHHHHcCCCCeeeeeecCcccc-hHHHHHHHHHhCceEEEeccCCC
Q 020025 173 IGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ-QKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
|-+-+.+++.++.+++.....+.+|-++.--... -..+++.|+++|..++++..-..
T Consensus 434 lsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~ 491 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQ 491 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC
Confidence 7788889999999999866677788665432221 24789999999999999764433
No 56
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=57.39 E-value=65 Score=28.55 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CcceeccCCCcHHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLG-LTKSIGVSNFACKKL 183 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l 183 (332)
+.+.. ..+-+.|..+|+++|.+-..-.+... + .....++.++.+++.+ .++...++......+
T Consensus 17 s~e~~-~~i~~~L~~~GV~~IEvg~~~~~~~~-p--------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i 80 (265)
T cd03174 17 STEDK-LEIAEALDEAGVDSIEVGSGASPKAV-P--------------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGI 80 (265)
T ss_pred CHHHH-HHHHHHHHHcCCCEEEeccCcCcccc-c--------------cCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence 44433 44445577899888888765433111 1 1235677888888888 677767776556667
Q ss_pred HHHHHHcCCCCeeeeeecCcc----------------cchHHHHHHHHHhCceEEEec
Q 020025 184 ERLLATAKIPPAVNQVELNPV----------------WQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~----------------~~~~~l~~~~~~~gi~v~a~~ 225 (332)
+.+.+.. . ..+++.+... ..-.+.+++++++|+.+...-
T Consensus 81 ~~a~~~g-~--~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 81 ERALEAG-V--DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred HHHHhCC-c--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7666543 2 3444443322 111456888999998776654
No 57
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=56.04 E-value=2.1e+02 Score=28.11 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=60.6
Q ss_pred cCCCcCChHHHHHHHHHHHhcCCCCC-CCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC----cccEEeeccCCCCCC
Q 020025 64 TAAIYQSEEPLGEAIAQALRLGLIKS-RDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE----HIDLYLIHFPVSLKP 138 (332)
Q Consensus 64 ta~~Ygse~~vG~al~~~~~~g~~~~-R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d----~iDl~~lH~p~~~~~ 138 (332)
..-.||.++-+-++|++..+.. + .+-++|.|-+.+.-.+ +.+..-+++.-++++-+ .+.++.+|.|+....
T Consensus 64 ~d~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~eiIG-DDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs 139 (454)
T cd01973 64 DSAVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTEIIG-DDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS 139 (454)
T ss_pred CceEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHhhhc-cCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC
Confidence 3345778888888888764432 2 3446777776432111 23333333332222111 378889998866422
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH--------cCCcceeccCC--CcHHHHHHHHHHcCCCC
Q 020025 139 GTGFPFSKEDIEPLDYEGVWEAMEECQN--------LGLTKSIGVSN--FACKKLERLLATAKIPP 194 (332)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~--------~G~ir~iGvs~--~~~~~l~~~~~~~~~~~ 194 (332)
...+...+++.+.+ +++|.-||-.+ .+.+++.++++..++.+
T Consensus 140 --------------~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 140 --------------MVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred --------------HHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 12233333333332 46788887443 33466777787776653
No 58
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=55.24 E-value=49 Score=29.52 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHHH----------------HH-HHHHHHhcCCCCCCCcEEEEeccCCCCCCh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEPL----------------GE-AIAQALRLGLIKSRDELFITSKLWFGHAHR 106 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~v----------------G~-al~~~~~~g~~~~R~~~~I~tK~~~~~~~~ 106 (332)
.++..++.+++-+.||.+|=|.....+-..+ .- .|+.. +. ....++|+|=.. +.
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A~----tgkPvIlSTG~s----tl 125 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-AK----TGKPVILSTGMS----TL 125 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-HT----T-S-EEEE-TT------H
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-HH----hCCcEEEECCCC----CH
Confidence 7888999999999999998665433211111 11 11111 11 344477777542 44
Q ss_pred hhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHH
Q 020025 107 QLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLER 185 (332)
Q Consensus 107 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~ 185 (332)
+.|.++++...+.- .-++.+||+...+ |...++ --+..|..|++.=- --||+|.|+.....-
T Consensus 126 ~EI~~Av~~~~~~~---~~~l~llHC~s~Y------P~~~e~-------~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~ 187 (241)
T PF03102_consen 126 EEIERAVEVLREAG---NEDLVLLHCVSSY------PTPPED-------VNLRVIPTLKERFG-VPVGYSDHTDGIEAP 187 (241)
T ss_dssp HHHHHHHHHHHHHC---T--EEEEEE-SSS------S--GGG---------TTHHHHHHHHST-SEEEEEE-SSSSHHH
T ss_pred HHHHHHHHHHHhcC---CCCEEEEecCCCC------CCChHH-------cChHHHHHHHHhcC-CCEEeCCCCCCcHHH
Confidence 67777777664443 4789999997543 222221 23455556665422 567999999754333
No 59
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=54.84 E-value=1.4e+02 Score=28.56 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC-------ChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ-------SEEPLGEAIAQALRLGLIKSRDELFITSKL 99 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg-------se~~vG~al~~~~~~g~~~~R~~~~I~tK~ 99 (332)
..++.+.+..|++.|- ...|+ +-+.|.+.+-+.+- +.+ ..++|||++-+
T Consensus 80 s~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~-~kl-~a~DV~ltsGC 135 (447)
T KOG0259|consen 80 SQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLP-NKL-TADDVVLTSGC 135 (447)
T ss_pred CHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCC-Ccc-CcCceEEeccc
Confidence 5788899999999883 22565 34555555433222 222 78999998765
No 60
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=53.89 E-value=92 Score=28.18 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCChhhHHHHHHHHHHhhCC--------------------------CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHH
Q 020025 103 HAHRQLVLPALQTSLKNLGL--------------------------EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEG 156 (332)
Q Consensus 103 ~~~~~~i~~~le~sL~~Lg~--------------------------d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 156 (332)
......+++.+...|+|+++ ...+++.|..|-..- .+...+-
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL------------DPVN~el 168 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL------------DPVNVEL 168 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC------------ChhhHHH
Confidence 44556788888888888873 334555555553321 1344555
Q ss_pred HHHHHHHHHHcCCcceeccCCCcHHHHHHHHHH
Q 020025 157 VWEAMEECQNLGLTKSIGVSNFACKKLERLLAT 189 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 189 (332)
.-++..+++++|. .|=+|+|..++++++++.
T Consensus 169 Lk~~I~~lk~~Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 169 LKDAIFELKEEGA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred HHHHHHHHHhcCC--EEEEecchHHHHHHHhhh
Confidence 6678889999999 788999999999999874
No 61
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=53.06 E-value=2e+02 Score=27.08 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE 123 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d 123 (332)
.++..+.+..+.+.|++.|=.-- . ..=+++++. -.+++.|..-.+ ...+.+. ..+.++.|.
T Consensus 127 ~~~~~~~a~~~~~~Gf~~~KiKv----~-~~v~avre~-------~G~~~~l~vDaN-~~w~~~~----A~~~~~~l~-- 187 (361)
T cd03322 127 IPELLEAVERHLAQGYRAIRVQL----P-KLFEAVREK-------FGFEFHLLHDVH-HRLTPNQ----AARFGKDVE-- 187 (361)
T ss_pred HHHHHHHHHHHHHcCCCeEeeCH----H-HHHHHHHhc-------cCCCceEEEECC-CCCCHHH----HHHHHHHhh--
Confidence 45666777778889999773210 1 111223322 123444443332 1233332 223333342
Q ss_pred cccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecC
Q 020025 124 HIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELN 202 (332)
Q Consensus 124 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~ 202 (332)
.+++.++-.|-.. +-++.+.+|++...+. ..|=|.++...+..+++...+ +++|+...
T Consensus 188 ~~~l~~iEeP~~~-------------------~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~--di~~~d~~ 246 (361)
T cd03322 188 PYRLFWMEDPTPA-------------------ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLI--DYIRTTVS 246 (361)
T ss_pred hcCCCEEECCCCc-------------------ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCC--CEEecCcc
Confidence 3577777777421 3377788888887775 777888899999999886554 47777655
Q ss_pred cc---cchHHHHHHHHHhCceEEEeccC
Q 020025 203 PV---WQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 203 ~~---~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
.+ .+-.++.+.|+++|+.++.++..
T Consensus 247 ~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 247 HAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred ccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 42 33368899999999999976554
No 62
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=52.97 E-value=1.9e+02 Score=26.78 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHhCCCeEecC----------CCcC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTA----------AIYQ-----SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQL 108 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta----------~~Yg-----se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~ 108 (332)
.++..+....+.+.|+..||-- ..+| .-+.+.+.++...+. ..+++-|+.|+.....+.+.
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~----~~~~~pVsvKiR~g~~~~~~ 149 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA----VPAHLPVTVKVRLGWDSGER 149 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh----cCCCcceEEEEECCCCCchH
Confidence 6777888888889999999832 2223 234555555544211 12246788886331111122
Q ss_pred HHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCC-cHHHHHHHH
Q 020025 109 VLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNF-ACKKLERLL 187 (332)
Q Consensus 109 i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~ 187 (332)
...+-+.++..| +|.+.+|.-..... | .. ..--|+...++++.-.|--||..+. +++...+++
T Consensus 150 -~~~~a~~l~~~G---vd~i~Vh~Rt~~~~---y--------~g-~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l 213 (312)
T PRK10550 150 -KFEIADAVQQAG---ATELVVHGRTKEDG---Y--------RA-EHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCM 213 (312)
T ss_pred -HHHHHHHHHhcC---CCEEEECCCCCccC---C--------CC-CcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHH
Confidence 345556677777 67778885432110 0 00 0012677888888777888888774 678888888
Q ss_pred HHcCCCCeeeee
Q 020025 188 ATAKIPPAVNQV 199 (332)
Q Consensus 188 ~~~~~~~~~~q~ 199 (332)
+..+.+ .+++
T Consensus 214 ~~~g~D--gVmi 223 (312)
T PRK10550 214 AITGCD--AVMI 223 (312)
T ss_pred hccCCC--EEEE
Confidence 766554 4444
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=52.89 E-value=1.1e+02 Score=29.54 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=71.0
Q ss_pred HHHHHHHHhCC--CeEecCCCcC----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 020025 49 ESVVHAIEVGY--RHFDTAAIYQ----SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL 122 (332)
Q Consensus 49 ~~l~~Ale~Gi--n~~Dta~~Yg----se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 122 (332)
.++.++++.|- +.| .|| -...+.+.|... ....+.-.+-+ ..+-+.+++.++++.+.++.
T Consensus 37 ~~lrr~v~~~~l~SmI----l~GPPG~GKTTlA~liA~~-------~~~~f~~~sAv---~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGHLHSMI----LWGPPGTGKTTLARLIAGT-------TNAAFEALSAV---TSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCCCceeE----EECCCCCCHHHHHHHHHHh-------hCCceEEeccc---cccHHHHHHHHHHHHHHHhc
Confidence 57899999873 456 777 477888888754 22233322222 33457899999999888887
Q ss_pred CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCc
Q 020025 123 EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFA 179 (332)
Q Consensus 123 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 179 (332)
.+=-++++...-+.+ ...-++|.-.++.|.|-.||.++-+
T Consensus 103 gr~tiLflDEIHRfn-----------------K~QQD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 103 GRRTILFLDEIHRFN-----------------KAQQDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred CCceEEEEehhhhcC-----------------hhhhhhhhhhhcCCeEEEEeccCCC
Confidence 777788887654432 2456788889999999999998855
No 64
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=51.66 E-value=1.3e+02 Score=27.12 Aligned_cols=86 Identities=19% Similarity=0.099 Sum_probs=57.5
Q ss_pred CeecccccccCCCCChH-HHHHHHHHHHHhCCCeEecCCCcC----Ch---HHHHHHHHHHHhcCCCCCCCcEEEEeccC
Q 020025 29 PLVGFGTAQFPFGAATE-AVKESVVHAIEVGYRHFDTAAIYQ----SE---EPLGEAIAQALRLGLIKSRDELFITSKLW 100 (332)
Q Consensus 29 s~lglG~~~~~~~~~~~-~~~~~l~~Ale~Gin~~Dta~~Yg----se---~~vG~al~~~~~~g~~~~R~~~~I~tK~~ 100 (332)
-++.+=+..+. ++ +...+.+.|+++|..|+=|+..|+ +. +++-+++++. + ..++ +.-|..
T Consensus 134 lKVIlEt~~L~----~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~---~~~~--vgIKAs 201 (257)
T PRK05283 134 LKVIIETGELK----DEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G---VAKT--VGFKPA 201 (257)
T ss_pred EEEEEeccccC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c---cCCC--eeEEcc
Confidence 34555555442 45 478899999999999999999996 22 2333333321 1 1122 555664
Q ss_pred CCCCChhhHHHHHHHHHHhhCCCccc
Q 020025 101 FGHAHRQLVLPALQTSLKNLGLEHID 126 (332)
Q Consensus 101 ~~~~~~~~i~~~le~sL~~Lg~d~iD 126 (332)
.--.+.+...+-++.--+.||.+|++
T Consensus 202 GGIrt~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 202 GGVRTAEDAAQYLALADEILGADWAD 227 (257)
T ss_pred CCCCCHHHHHHHHHHHHHHhChhhcC
Confidence 44456688999999999999999887
No 65
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=51.11 E-value=47 Score=32.72 Aligned_cols=127 Identities=18% Similarity=0.071 Sum_probs=83.7
Q ss_pred HHHHHHHhCCCeEe--cCCCc---C-------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCC-ChhhH-------
Q 020025 50 SVVHAIEVGYRHFD--TAAIY---Q-------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHA-HRQLV------- 109 (332)
Q Consensus 50 ~l~~Ale~Gin~~D--ta~~Y---g-------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~-~~~~i------- 109 (332)
.++..-+.|+..+= ||..| | +.+.+..+-++.+... -+.++||++-++.-.. .|...
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCceE
Confidence 44556677877553 44444 2 4566777777665322 4788899888854211 11110
Q ss_pred ---HHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHH
Q 020025 110 ---LPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERL 186 (332)
Q Consensus 110 ---~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 186 (332)
+-.-.+.-+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-.+.+.++
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~----------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l 242 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT----------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPEL 242 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc----------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHH
Confidence 11123445788899999873 23789999999999999999999999899999999
Q ss_pred HHHcC-CCCeeeeeec
Q 020025 187 LATAK-IPPAVNQVEL 201 (332)
Q Consensus 187 ~~~~~-~~~~~~q~~~ 201 (332)
++..- +++..-|...
T Consensus 243 ~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 243 LKRGVVPDVVTDQTSA 258 (545)
T ss_pred HHcCCCCCCcCCCCcc
Confidence 88532 2333446654
No 66
>PRK05414 urocanate hydratase; Provisional
Probab=50.39 E-value=50 Score=32.70 Aligned_cols=127 Identities=20% Similarity=0.099 Sum_probs=83.6
Q ss_pred HHHHHHHhCCCeEe--cCCCc---C-------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCC-ChhhH-------
Q 020025 50 SVVHAIEVGYRHFD--TAAIY---Q-------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHA-HRQLV------- 109 (332)
Q Consensus 50 ~l~~Ale~Gin~~D--ta~~Y---g-------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~-~~~~i------- 109 (332)
.+...-+.|+..+= ||..| | +.+.+..+-++.+. |. -+.++||++-++.-.. .|...
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCceE
Confidence 34555667777553 45444 2 45666777676653 33 4788999988854211 11110
Q ss_pred ---HHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHH
Q 020025 110 ---LPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERL 186 (332)
Q Consensus 110 ---~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 186 (332)
+-.-.+.-+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-.+.++++
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~----------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l 251 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA----------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPEL 251 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc----------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHH
Confidence 11223445788899999873 23789999999999999999999999889999999
Q ss_pred HHHcC-CCCeeeeeec
Q 020025 187 LATAK-IPPAVNQVEL 201 (332)
Q Consensus 187 ~~~~~-~~~~~~q~~~ 201 (332)
++..- +++..-|...
T Consensus 252 ~~~~i~pDlvtDQTSa 267 (556)
T PRK05414 252 VRRGIRPDLVTDQTSA 267 (556)
T ss_pred HHcCCCCCccCcCccc
Confidence 88642 2333446654
No 67
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=50.32 E-value=1.3e+02 Score=26.38 Aligned_cols=120 Identities=14% Similarity=0.227 Sum_probs=63.0
Q ss_pred CCeEec-CCCcC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC-----C--CChhhHHHHHHHHHHhhCCCcccEE
Q 020025 59 YRHFDT-AAIYQ--SEEPLGEAIAQALRLGLIKSRDELFITSKLWFG-----H--AHRQLVLPALQTSLKNLGLEHIDLY 128 (332)
Q Consensus 59 in~~Dt-a~~Yg--se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~-----~--~~~~~i~~~le~sL~~Lg~d~iDl~ 128 (332)
.|.++. +..|. +.+.+.++.++ .++++..+.|+... . ...+.+.+.+-+.++-|| +++..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~--------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ--------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT--------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh--------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 454443 45677 78888888663 57889999998531 1 123455456666999999 999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchH
Q 020025 129 LIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQK 208 (332)
Q Consensus 129 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~ 208 (332)
++.-|-.... ..+.++.|..+.+.=. .++ +.++.+. |.-+...
T Consensus 90 L~Q~Ppsf~~---------------~~~~~~~l~~~l~~~~--------------------~~~-~~avE~R-~~sW~~~ 132 (230)
T PF01904_consen 90 LFQFPPSFRF---------------TPENLERLDAFLDRLP--------------------RGF-RYAVEFR-HPSWFTE 132 (230)
T ss_dssp EEE--TT--S----------------HHHHHHHHHHHHHTT---------------------TS--EEEE---BGGGGCH
T ss_pred EEEcCCCcCC---------------CHHHHHHHHHHHhhcc--------------------ccc-ceEEecC-CcchhhH
Confidence 9998843222 2344444444432211 011 1223221 2223457
Q ss_pred HHHHHHHHhCceEEEe
Q 020025 209 KLRDFCEKKGIHITAY 224 (332)
Q Consensus 209 ~l~~~~~~~gi~v~a~ 224 (332)
++.++++++|+..+.-
T Consensus 133 ~~~~~l~~~~~~~v~~ 148 (230)
T PF01904_consen 133 EVFELLREHGVALVIA 148 (230)
T ss_dssp HHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHcCCEEEEe
Confidence 7888888888877754
No 68
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=50.15 E-value=1.6e+02 Score=26.40 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEe-eccCCCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHc-CCcceeccCCC
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYL-IHFPVSLKPGTGFPFSKEDIEPLDYE----GVWEAMEECQNL-GLTKSIGVSNF 178 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~l~~~-G~ir~iGvs~~ 178 (332)
+++.+.+..++.+ .-|.++||+=- --.|+. + ....+ .+...++.+++. +. -+.+-++
T Consensus 21 ~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~-----------~---~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~ 83 (257)
T TIGR01496 21 SVDKAVAHAERML-EEGADIIDVGGESTRPGA-----------D---RVSPEEELNRVVPVIKALRDQPDV--PISVDTY 83 (257)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCCCC-----------C---CCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCC
Confidence 4566666666655 46899999921 111211 0 11222 355556666665 43 4899999
Q ss_pred cHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEecc
Q 020025 179 ACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~ 226 (332)
+++.++++++.+ . ..+|-+.. .. ..++++.++++|..++.+..
T Consensus 84 ~~~vi~~al~~G-~-~iINsis~--~~-~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 84 RAEVARAALEAG-A-DIINDVSG--GQ-DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CHHHHHHHHHcC-C-CEEEECCC--CC-CchhHHHHHHcCCcEEEEeC
Confidence 999999999873 2 34554433 22 45788999999999998543
No 69
>PLN02489 homocysteine S-methyltransferase
Probab=50.11 E-value=2.2e+02 Score=26.67 Aligned_cols=216 Identities=13% Similarity=0.057 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCC--------------hHHHHHHHH---HHHhc---C----------CCCCCCcE
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQS--------------EEPLGEAIA---QALRL---G----------LIKSRDEL 93 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygs--------------e~~vG~al~---~~~~~---g----------~~~~R~~~ 93 (332)
++...++=+..+++|-+.+-|...-.+ +++.-.+++ +...+ . .-..+.++
T Consensus 54 Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (335)
T PLN02489 54 PHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPI 133 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCc
Confidence 555666656667999999988754322 112222222 11110 0 00013457
Q ss_pred EEEeccCCCC----------------CChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHH
Q 020025 94 FITSKLWFGH----------------AHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGV 157 (332)
Q Consensus 94 ~I~tK~~~~~----------------~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~ 157 (332)
+|+.-+++.. .+.+.+++.....++.|--.-+|++++--. ....|+
T Consensus 134 ~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~------------------~~l~E~ 195 (335)
T PLN02489 134 LVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI------------------PNKLEA 195 (335)
T ss_pred EEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------CChHHH
Confidence 8888776432 344667777777777774456999999854 136777
Q ss_pred HHHHHHHHHcC--CcceeccCCCc------HHHHHHHHHHc--CCCCeeeeeecCcccchHHHHHHHHHh-CceEEEecc
Q 020025 158 WEAMEECQNLG--LTKSIGVSNFA------CKKLERLLATA--KIPPAVNQVELNPVWQQKKLRDFCEKK-GIHITAYSP 226 (332)
Q Consensus 158 ~~~L~~l~~~G--~ir~iGvs~~~------~~~l~~~~~~~--~~~~~~~q~~~~~~~~~~~l~~~~~~~-gi~v~a~~~ 226 (332)
..+++.+++.+ +--.|.++..+ ...+.++++.. ...+..+-++......-..+++..+.. .+.+++|-.
T Consensus 196 ~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vyPN 275 (335)
T PLN02489 196 QAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPN 275 (335)
T ss_pred HHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEECC
Confidence 77777777765 44445554311 11223333221 124456666664221113455555444 677777644
Q ss_pred CCCCCCCCCC--ccccchHHHHHHHHHcCCC---HHHHHHHHHHhCCCEEEeCC--CCHHHHHHhHcccCC
Q 020025 227 LGAKGTIWGT--NRVMECQMLKEIANAKGKS---VAQVSLRWVYQQGVSLVVKS--FNKERMKENLDIFYW 290 (332)
Q Consensus 227 l~~~G~l~~~--~~~~~~~~l~~la~~~~~s---~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~a~~~ 290 (332)
- |..+.. .... ..++.+ .++.+.+|.- .|+..|=|+ ++|+|+++.-+.++.
T Consensus 276 a---G~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~Ga~iIGGCCgt~P~hI~al~~~l~~ 333 (335)
T PLN02489 276 S---GETYDGEAKEWV---------ESTGVSDEDFVSYVNKWRD-AGASLIGGCCRTTPNTIRAISKALSE 333 (335)
T ss_pred C---CCCCCCccCccc---------CCCCCCHHHHHHHHHHHHH-CCCcEEeeCCCCCHHHHHHHHHHHhc
Confidence 3 222111 0000 012223 3466777863 465555443 799999888776643
No 70
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=50.10 E-value=1.9e+02 Score=25.81 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChH--HHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEE--PLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLG 121 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~--~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg 121 (332)
.++..+.++.+++.|++.|-.--.-..+. ..=+++++. -.+++.|....+. ..+.+...+-+ +.|+.+
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan~-~~~~~~a~~~~-~~l~~~- 155 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDANR-GWTPKQAIRAL-RALEDL- 155 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCC-CcCHHHHHHHH-HHHHhc-
Confidence 56677777888899999886532111122 222334432 2234455444421 22333322222 333444
Q ss_pred CCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeee
Q 020025 122 LEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVE 200 (332)
Q Consensus 122 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 200 (332)
++.++..|-.. +-++.+.++++.-.+. ..|=+.++...+.++++...++ ++|+.
T Consensus 156 ----~i~~iEeP~~~-------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d--~v~~k 210 (265)
T cd03315 156 ----GLDYVEQPLPA-------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAAD--AVNIK 210 (265)
T ss_pred ----CCCEEECCCCc-------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCC--EEEEe
Confidence 44455666321 2256667777776554 4555667888888888766554 66666
Q ss_pred cCcc---cchHHHHHHHHHhCceEEEeccCCC
Q 020025 201 LNPV---WQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 201 ~~~~---~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
.... ..-.++.+.|+++|+.++..+.+.+
T Consensus 211 ~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 211 TAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred cccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 5443 2236789999999999998766654
No 71
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=49.82 E-value=2.1e+02 Score=26.21 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHH
Q 020025 109 VLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLA 188 (332)
Q Consensus 109 i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 188 (332)
-+..+-+.|.++|+++|.+-.+..|... | . ..+.++.+..+.+...++...+. .+...++.+++
T Consensus 27 ~k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p------------~--~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~ 90 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEVASFVSPKWV-P------------Q--MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALA 90 (287)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCcccc-c------------c--cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHH
Confidence 4556667789999999999744444211 1 0 11235555555544446666655 47777888776
Q ss_pred HcCCCCeeeeeecCcccc--------------hHHHHHHHHHhCceEEE
Q 020025 189 TAKIPPAVNQVELNPVWQ--------------QKKLRDFCEKKGIHITA 223 (332)
Q Consensus 189 ~~~~~~~~~q~~~~~~~~--------------~~~l~~~~~~~gi~v~a 223 (332)
.. .+.+..-+..|.... -.+.+++++++|+.+.+
T Consensus 91 ~g-~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 91 AG-ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred cC-CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 43 332222223322110 13678999999988764
No 72
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=49.50 E-value=2.5e+02 Score=27.83 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 020025 89 SRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLG 168 (332)
Q Consensus 89 ~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 168 (332)
.+.+++|+-.+...+.....+..-+.+.+++-++.- .-+-|.-- +...++.......+.++++.|
T Consensus 350 ~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~p-qQI~lElT--------------ER~f~D~~~~~~iI~r~ReaG 414 (524)
T COG4943 350 QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRP-QQIALELT--------------ERTFADPKKMTPIILRLREAG 414 (524)
T ss_pred hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcCh-HHheeehh--------------hhhhcCchhhhHHHHHHHhcC
Confidence 567788988887777766778888888888777632 11111110 111245667788899999999
Q ss_pred CcceeccCCCcH--HHHHHHHH----HcCCCCeeeee-ecCcccc--hHHHHHHHHHhCceEEEe
Q 020025 169 LTKSIGVSNFAC--KKLERLLA----TAKIPPAVNQV-ELNPVWQ--QKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 169 ~ir~iGvs~~~~--~~l~~~~~----~~~~~~~~~q~-~~~~~~~--~~~l~~~~~~~gi~v~a~ 224 (332)
.--|| -+|.. ..+..+.+ ..+++=.+++. .++.-.. -..+++.|+++|+.+++=
T Consensus 415 ~~IyI--DDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 415 HEIYI--DDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred CeEEE--ccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 85444 33221 12222211 11111111111 1111000 157899999999999984
No 73
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=48.75 E-value=1.7e+02 Score=26.34 Aligned_cols=110 Identities=11% Similarity=0.046 Sum_probs=58.9
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCc---
Q 020025 103 HAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFA--- 179 (332)
Q Consensus 103 ~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~--- 179 (332)
.++.+ -+..+-+.|.++|+|+|++=+......... ........+.++.+.++.+ +..+..+++...
T Consensus 16 ~f~~~-~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~ 84 (266)
T cd07944 16 DFGDE-FVKAIYRALAAAGIDYVEIGYRSSPEKEFK---------GKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDD 84 (266)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEeecCCCCccccC---------CCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCC
Confidence 34443 556677779999999999976543211100 0001123456666666553 346666655544
Q ss_pred HHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEe
Q 020025 180 CKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 224 (332)
.+.++.+.+ ..++..-+.+..+.+..-.+.+++++++|..+...
T Consensus 85 ~~~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 85 IDLLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 344443322 22332222233333333367889999999876643
No 74
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=45.45 E-value=2.5e+02 Score=25.96 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=69.0
Q ss_pred HHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eeccCCC---cHHHHHHHHHHc
Q 020025 115 TSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTK-SIGVSNF---ACKKLERLLATA 190 (332)
Q Consensus 115 ~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~---~~~~l~~~~~~~ 190 (332)
...++.| .|++-+|-...+. .+.+....++.+.|+++.+.=+|- .||=|.. ++..++++.+.+
T Consensus 158 k~Vk~fg---admvTiHlIsTdP----------ki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEva 224 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDP----------KIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVA 224 (403)
T ss_pred HHHHHhC---CceEEEEeecCCc----------cccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhh
Confidence 3446666 6788888653321 122345789999999988887774 5677764 477788887776
Q ss_pred CCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCC
Q 020025 191 KIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 191 ~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
... .+.-...|+-..-+.+.+++.++|=.|++|+++.-
T Consensus 225 EGe-RclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 225 EGE-RCLLASANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cCc-eEEeeccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 543 23323344333336899999999999999999875
No 75
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=45.36 E-value=2.6e+02 Score=26.08 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=84.0
Q ss_pred CCChHHHHHHHHHHHHhCCCeEec----------CCCcC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEecc--CCCC
Q 020025 41 GAATEAVKESVVHAIEVGYRHFDT----------AAIYQ-----SEEPLGEAIAQALRLGLIKSRDELFITSKL--WFGH 103 (332)
Q Consensus 41 ~~~~~~~~~~l~~Ale~Gin~~Dt----------a~~Yg-----se~~vG~al~~~~~~g~~~~R~~~~I~tK~--~~~~ 103 (332)
-+ ++...+.-+.+-+.|+..||- ...+| +...+.+.++..... -. ++-|+.|+ +..+
T Consensus 76 sd-p~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~a----v~-~iPVTVKiRlG~d~ 149 (323)
T COG0042 76 SD-PELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEA----VG-DIPVTVKIRLGWDD 149 (323)
T ss_pred CC-HHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHh----hC-CCCeEEEEecccCc
Confidence 44 688888889999999999994 33344 456777777655222 12 56788887 3322
Q ss_pred CChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-cceeccCC-CcHH
Q 020025 104 AHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGL-TKSIGVSN-FACK 181 (332)
Q Consensus 104 ~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~-~~~~ 181 (332)
. +.....+.+.++..| +|.+.+|.-....... -..-|+.+.++++.=. |.-||=.+ ++++
T Consensus 150 ~--~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~-------------~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~ 211 (323)
T COG0042 150 D--DILALEIARILEDAG---ADALTVHGRTRAQGYL-------------GPADWDYIKELKEAVPSIPVIANGDIKSLE 211 (323)
T ss_pred c--cccHHHHHHHHHhcC---CCEEEEecccHHhcCC-------------CccCHHHHHHHHHhCCCCeEEeCCCcCCHH
Confidence 2 234455667777777 7899999765432211 1135777778877766 66666555 6788
Q ss_pred HHHHHHHHcCCC
Q 020025 182 KLERLLATAKIP 193 (332)
Q Consensus 182 ~l~~~~~~~~~~ 193 (332)
...+.++..+.+
T Consensus 212 ~a~~~l~~tg~D 223 (323)
T COG0042 212 DAKEMLEYTGAD 223 (323)
T ss_pred HHHHHHHhhCCC
Confidence 888888876654
No 76
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=44.89 E-value=1.3e+02 Score=28.24 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEe
Q 020025 158 WEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 158 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~ 224 (332)
++.+.+|+++..+. +.|=+.++...+..+++...++ ++|+..... ..-.++..+|+++|+.++..
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d--~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAAD--VFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCC--eEEEeecccCCHHHHHHHHHHHHHcCCceeec
Confidence 45555555554443 4444455556666655544332 444433221 22245566666666666543
No 77
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=44.45 E-value=31 Score=23.68 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 020025 244 MLKEIANAKGKSVAQVSLRWVYQ 266 (332)
Q Consensus 244 ~l~~la~~~~~s~~qlal~~~l~ 266 (332)
.+.+||+++|+++.+++..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 78
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=43.66 E-value=51 Score=29.99 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCC
Q 020025 178 FACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
|+...+.++.+..+++..++-..||+.+. ++-++|++.|+.+++.-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 45566777778888887777777766554 899999999999999999865
No 79
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=43.15 E-value=2.9e+02 Score=26.08 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHH
Q 020025 108 LVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLL 187 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 187 (332)
.-+-.+-+.|.++|+++|++-..-.|... | . -.+.+++++++.. ...+++.+++ .+...++.++
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~v-P---------q--mad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~ 131 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWV-P---------Q--LADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAI 131 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccc-c---------c--cccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHH
Confidence 45666777899999999998754343211 1 0 0123455555543 2335555554 4788888888
Q ss_pred HHcCCCCeeeeeecCcccc--------h------HHHHHHHHHhCceEEEe
Q 020025 188 ATAKIPPAVNQVELNPVWQ--------Q------KKLRDFCEKKGIHITAY 224 (332)
Q Consensus 188 ~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gi~v~a~ 224 (332)
+.. .+.+.+-+..+.... + .+++++|+++|+.+.++
T Consensus 132 ~~g-~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 132 AAG-AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred HcC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 753 222222222222111 1 36789999999888643
No 80
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=42.95 E-value=1e+02 Score=27.11 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=37.6
Q ss_pred CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHH
Q 020025 123 EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLA 188 (332)
Q Consensus 123 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 188 (332)
...+++.+..|...-+ -.......+.+.+++++|+ .+=+|+|..++++++.+
T Consensus 150 h~P~i~vlDEP~sGLD------------i~~~r~~~dfi~q~k~egr--~viFSSH~m~EvealCD 201 (245)
T COG4555 150 HDPSILVLDEPTSGLD------------IRTRRKFHDFIKQLKNEGR--AVIFSSHIMQEVEALCD 201 (245)
T ss_pred cCCCeEEEcCCCCCcc------------HHHHHHHHHHHHHhhcCCc--EEEEecccHHHHHHhhh
Confidence 3456677776644321 2335677888999999998 68889999999888775
No 81
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.93 E-value=1.1e+02 Score=24.87 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=47.4
Q ss_pred eeccCCCc--HHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHH
Q 020025 172 SIGVSNFA--CKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIA 249 (332)
Q Consensus 172 ~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la 249 (332)
-+|...|+ ...+..+++..++. ++ ...++....+++..+.++++.++.-|.+.+ +-+ ...+.+.+.+
T Consensus 19 k~GlDgHd~gakvia~~l~d~Gfe--Vi--~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g-~h~------~l~~~lve~l 87 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFE--VI--NLGLFQTPEEAVRAAVEEDVDVIGVSSLDG-GHL------TLVPGLVEAL 87 (143)
T ss_pred ccCccccccchHHHHHHHHhCCce--EE--ecCCcCCHHHHHHHHHhcCCCEEEEEeccc-hHH------HHHHHHHHHH
Confidence 35888887 46678888877764 22 223344457889999999999999999987 421 2234555555
Q ss_pred HHcC
Q 020025 250 NAKG 253 (332)
Q Consensus 250 ~~~~ 253 (332)
+++|
T Consensus 88 re~G 91 (143)
T COG2185 88 REAG 91 (143)
T ss_pred HHhC
Confidence 5554
No 82
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=42.69 E-value=2.8e+02 Score=25.64 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ-SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL 122 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg-se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 122 (332)
.++..++++.+.+.|++.+.-...-. ...-+-+.++...+.+ .-..+.|+|-.. .+.+. -..|...|+
T Consensus 51 ~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~---~~~~i~itTNG~-------ll~~~-~~~L~~agl 119 (331)
T PRK00164 51 LEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP---GIRDLALTTNGY-------LLARR-AAALKDAGL 119 (331)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC---CCceEEEEcCch-------hHHHH-HHHHHHcCC
Confidence 67888999999999998776432111 1122334444321111 123566776642 12222 234555666
Q ss_pred CcccEEeeccCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHcCC----cceeccCCCcHHHHHHHHHHcC-CCCee
Q 020025 123 EHIDLYLIHFPVSLKPGTGFPFSKEDIE-PLDYEGVWEAMEECQNLGL----TKSIGVSNFACKKLERLLATAK-IPPAV 196 (332)
Q Consensus 123 d~iDl~~lH~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~~~-~~~~~ 196 (332)
+.+- +-||..+.... ..+. ...++.++++++.+++.|. |..+.+...+.+++.++++... ..+.+
T Consensus 120 ~~i~-ISlds~~~e~~--------~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 120 DRVN-VSLDSLDPERF--------KAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred CEEE-EEeccCCHHHh--------ccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 5542 34454432110 0011 1347889999999999885 3344444455566666655432 23333
Q ss_pred eeeecCcccc-----------hHHHHHHHHHhCceEE
Q 020025 197 NQVELNPVWQ-----------QKKLRDFCEKKGIHIT 222 (332)
Q Consensus 197 ~q~~~~~~~~-----------~~~l~~~~~~~gi~v~ 222 (332)
.-++|.++.. ..++.+..+++|+.+.
T Consensus 191 ~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 191 RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 3333333211 1456777777655443
No 83
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=42.45 E-value=1.6e+02 Score=28.92 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCC-----CCCChhhHHHHHHHHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWF-----GHAHRQLVLPALQTSLK 118 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~-----~~~~~~~i~~~le~sL~ 118 (332)
.+...+-++.-+.+|++||-- | |..-+.+-+... ..-.++. +|+.++
T Consensus 217 ~e~Vv~EVkaLY~~GvrhFRl----------G--------------RQ~difsy~~~~~g~e~P~PnPea----lekL~~ 268 (560)
T COG1031 217 PEDVVEEVKALYRAGVRHFRL----------G--------------RQADIFSYGADDNGGEVPRPNPEA----LEKLFR 268 (560)
T ss_pred HHHHHHHHHHHHHhccceeee----------c--------------cccceeeecccccCCCCCCCCHHH----HHHHHH
Confidence 678888889999999999932 2 222222222211 1112443 444444
Q ss_pred hhCCCcccEEeeccCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHH
Q 020025 119 NLGLEHIDLYLIHFPVSLKPGT--GFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKL 183 (332)
Q Consensus 119 ~Lg~d~iDl~~lH~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 183 (332)
-...-..++-.||-- ..+|.+ .| +..-.++.+.+.+...-|-|-++|+-++++..+
T Consensus 269 Gir~~AP~l~tLHiD-NaNP~tIa~y--------p~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~ 326 (560)
T COG1031 269 GIRNVAPNLKTLHID-NANPATIARY--------PEESREIAKVIVKYGTPGNVAAFGLESADPRVA 326 (560)
T ss_pred HHHhhCCCCeeeeec-CCCchhhhcC--------hHHHHHHHHHHHhhCCCCceeeeeccccCHHHH
Confidence 443344556666621 112211 11 123567888888888899999999999886543
No 84
>PRK06361 hypothetical protein; Provisional
Probab=42.39 E-value=2.2e+02 Score=24.36 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC--C-hHHH---HHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ--S-EEPL---GEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSL 117 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg--s-e~~v---G~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL 117 (332)
.....++++.|.+.|+..|=.+++.. + ...+ -+..++. +.. ..=+++...-+.... ++. ...+...+
T Consensus 9 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~---~~i~v~~GiE~~~~~--~~~-~~~~~~~~ 81 (212)
T PRK06361 9 ELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY---WDIEVIPGVELTHVP--PKL-IPKLAKKA 81 (212)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc---CCCEEEEEEEEcccC--chh-hchHHHHH
Confidence 34467899999999999886666654 1 1111 1111211 000 122334444443211 122 23334555
Q ss_pred HhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeee
Q 020025 118 KNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVN 197 (332)
Q Consensus 118 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~ 197 (332)
.+++ +|+..+|......+ . ....-.++.+.|.+.-+|=-..-...+.+++...++ +.
T Consensus 82 ~~~~---~~~~svH~~~~~~~-------------~----~~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~---~l 138 (212)
T PRK06361 82 RDLG---AEIVVVHGETIVEP-------------V----EEGTNLAAIECEDVDILAHPGLITEEEAELAAENGV---FL 138 (212)
T ss_pred HHCC---CEEEEECCCCcchh-------------h----hhhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCe---EE
Confidence 5554 56668894322111 0 001114567788776666333211222233333333 22
Q ss_pred eeec--CcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHHHH
Q 020025 198 QVEL--NPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLRWV 264 (332)
Q Consensus 198 q~~~--~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~ 264 (332)
.++. +.......+++++++.|+.++.-+.... +..+...+.+..++++.|.+..++---+.
T Consensus 139 Ein~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 139 EITARKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred EEECCCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2222 1112236789999999999877666553 22333456778888888888887665543
No 85
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=42.35 E-value=3e+02 Score=25.89 Aligned_cols=92 Identities=17% Similarity=0.081 Sum_probs=44.7
Q ss_pred CCcEEEEeccCCCC-----CChhhHHHHHHHHHHhhCCCcccEE-eecc-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 020025 90 RDELFITSKLWFGH-----AHRQLVLPALQTSLKNLGLEHIDLY-LIHF-PVSLKPGTGFPFSKEDIEPLDYEGVWEAME 162 (332)
Q Consensus 90 R~~~~I~tK~~~~~-----~~~~~i~~~le~sL~~Lg~d~iDl~-~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 162 (332)
..++.|..|+...+ .+.+.. ..+-+-|+.+|+|++++- -+|. +..... . ............
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~-~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~--------~---~~~~~~~~~~~~ 269 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEV-VALAKALEAAGADILNTGIGWHEARVPTIA--------T---SVPRGAFAWATA 269 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHH-HHHHHHHHHcCCCEEEeCCCcCCCCCcccc--------c---cCCchhhHHHHH
Confidence 45677777775433 222222 234455677887777762 2232 111000 0 000111233445
Q ss_pred HHHHcCCcceeccCC-CcHHHHHHHHHHcCCC
Q 020025 163 ECQNLGLTKSIGVSN-FACKKLERLLATAKIP 193 (332)
Q Consensus 163 ~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~ 193 (332)
++++.=.+--+++.. ++++.++++++....+
T Consensus 270 ~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 270 KLKRAVDIPVIASNRINTPEVAERLLADGDAD 301 (353)
T ss_pred HHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCC
Confidence 556555555555544 4667777777755443
No 86
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=41.93 E-value=3e+02 Score=25.84 Aligned_cols=139 Identities=9% Similarity=0.137 Sum_probs=75.6
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLE 184 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 184 (332)
+.+.+.+.++.. ...|...+.+..-+.|+ ...+.+.+.++.++++.- .+-++.+++.++.
T Consensus 80 ~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-----------------~~~~~~~e~i~~Ik~~~p--~i~i~~~~~~ei~ 139 (351)
T TIGR03700 80 SLEEIVARVKEA-YAPGATEVHIVGGLHPN-----------------LPFEWYLDMIRTLKEAYP--DLHVKAFTAVEIH 139 (351)
T ss_pred CHHHHHHHHHHH-HHCCCcEEEEecCCCCC-----------------CCHHHHHHHHHHHHHHCC--CceEEeCCHHHHH
Confidence 456666666543 45777777776444441 225566677777776642 3445555555555
Q ss_pred HHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHH--HHHH
Q 020025 185 RLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQ--VSLR 262 (332)
Q Consensus 185 ~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~q--lal~ 262 (332)
.+....+. ..++.+...++.|+..+... |. .....+.+..++.. +.+..+ -+++
T Consensus 140 ~~~~~~g~-------------~~~e~l~~LkeAGld~~~~~-----g~-----E~~~~~v~~~i~~~-~~~~~~~l~~i~ 195 (351)
T TIGR03700 140 HFSKISGL-------------PTEEVLDELKEAGLDSMPGG-----GA-----EIFAEEVRQQICPE-KISAERWLEIHR 195 (351)
T ss_pred HHHHHcCC-------------CHHHHHHHHHHcCCCcCCCC-----cc-----cccCHHHHhhcCCC-CCCHHHHHHHHH
Confidence 44332221 13566777888787655421 11 12223344444433 345555 2788
Q ss_pred HHHhCC----CEEEeCCC-CHHHHHHhHcc
Q 020025 263 WVYQQG----VSLVVKSF-NKERMKENLDI 287 (332)
Q Consensus 263 ~~l~~~----~~~i~g~~-~~~~l~~nl~a 287 (332)
++...| +..++|.. ++++..+.+..
T Consensus 196 ~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~ 225 (351)
T TIGR03700 196 TAHELGLKTNATMLYGHIETPAHRVDHMLR 225 (351)
T ss_pred HHHHcCCCcceEEEeeCCCCHHHHHHHHHH
Confidence 888877 45678864 55555444443
No 87
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.76 E-value=2e+02 Score=27.50 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=62.2
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC-c--cee---ccCCCcHHHHHHHHHHcC-C------
Q 020025 127 LYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNL-GL-T--KSI---GVSNFACKKLERLLATAK-I------ 192 (332)
Q Consensus 127 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~-i--r~i---Gvs~~~~~~l~~~~~~~~-~------ 192 (332)
.+-||.|+......=.|.+ ....++++++++.+..++ |+ | -|+ ||. -+.++..++.+... .
T Consensus 231 AiSLHA~~~e~R~~lmPin----~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvN-Ds~e~A~~L~~llk~~~~~~~l 305 (371)
T PRK14461 231 AISLHAPDDALRSELMPVN----RRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKN-DHPEQAAALARLLRGEAPPGPL 305 (371)
T ss_pred EEEeCCCCHHHHHHhcCcc----cCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCC-CCHHHHHHHHHHHcCCccccCC
Confidence 3778998764332211111 124688999999997654 32 1 222 333 35677777766543 3
Q ss_pred CCeeeeeecCcccch----------HHHHHHHHHhCceEEEeccCCC
Q 020025 193 PPAVNQVELNPVWQQ----------KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 193 ~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
+..+|-++||+.... ....+.++++||.+..+...|.
T Consensus 306 ~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 306 LVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 567899999986321 3556778899999999988765
No 88
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=41.57 E-value=3.1e+02 Score=25.95 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHH-cCC---cceeccCCC--cHHHHHHHHHHc-CCCCeeeeeecCcccch----------HHHHHHHH
Q 020025 153 DYEGVWEAMEECQN-LGL---TKSIGVSNF--ACKKLERLLATA-KIPPAVNQVELNPVWQQ----------KKLRDFCE 215 (332)
Q Consensus 153 ~~~~~~~~L~~l~~-~G~---ir~iGvs~~--~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~----------~~l~~~~~ 215 (332)
.++++++++.++.+ .|+ |+++=+.+. +.+++.++.+.. ++++.++-++||+.... ..+.++.+
T Consensus 240 ~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 319 (355)
T TIGR00048 240 NIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLM 319 (355)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHH
Confidence 47888888887654 342 344433333 346666665543 24456777888875321 24566678
Q ss_pred HhCceEEEeccCCC
Q 020025 216 KKGIHITAYSPLGA 229 (332)
Q Consensus 216 ~~gi~v~a~~~l~~ 229 (332)
++|+.+......|.
T Consensus 320 ~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 320 SYGFTVTIRKSRGD 333 (355)
T ss_pred HCCCeEEEeCCCCc
Confidence 88999999887765
No 89
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=41.50 E-value=88 Score=25.84 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ-SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL 122 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg-se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 122 (332)
++...-.+++|-+.||.+|=.|..|| +-..+-+.+. | .-+-+.++-..+....+.-.+.+.++.-|+..|.
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---CceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 44555667778888999999999998 3222223322 2 2122334444444444456688889999999995
Q ss_pred C
Q 020025 123 E 123 (332)
Q Consensus 123 d 123 (332)
+
T Consensus 85 ~ 85 (186)
T COG1751 85 K 85 (186)
T ss_pred e
Confidence 4
No 90
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=41.48 E-value=2.5e+02 Score=24.72 Aligned_cols=113 Identities=7% Similarity=0.068 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCC-----
Q 020025 180 CKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGK----- 254 (332)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~----- 254 (332)
.+.++...+..+++....+++-..-..-+++....++.||..+.++.+.. . .....+..+|++.|+
T Consensus 47 ~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s-~--------~qr~~~e~vc~~~gl~~~~P 117 (222)
T TIGR00289 47 LHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIES-N--------YQKSRIDKVCRELGLKSIAP 117 (222)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcccc-H--------HHHHHHHHHHHHcCCEEecc
Confidence 34444444555565433332211001114566667777877777666654 1 123456677777653
Q ss_pred ----CHHHHHHHHHHhCC-CEEEeCCCCHHHHHHhHcccCCCCCHHHHHHHhccCCC
Q 020025 255 ----SVAQVSLRWVYQQG-VSLVVKSFNKERMKENLDIFYWELSAEELQKIEQIPQY 306 (332)
Q Consensus 255 ----s~~qlal~~~l~~~-~~~i~g~~~~~~l~~nl~a~~~~L~~e~~~~i~~l~~~ 306 (332)
++.++ +.++ ..| .++|+.+... .|.+. -++..|+.+.+++|.++.+.
T Consensus 118 LW~~d~~~l-~e~i-~~Gf~aiIv~v~~~-gL~~~--~LGr~id~~~~~~L~~l~~~ 169 (222)
T TIGR00289 118 LWHADPEKL-MYEV-AEKFEVIIVSVSAM-GLDES--WLGRRIDKECIDDLKRLNEK 169 (222)
T ss_pred ccCCCHHHH-HHHH-HcCCeEEEEEEccC-CCChH--HcCCccCHHHHHHHHHHHhh
Confidence 56665 4654 778 5556555432 34322 35668999988888876544
No 91
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=41.33 E-value=2.2e+02 Score=27.34 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEeccC
Q 020025 157 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
-++.+.+|++.-.+. ..|=|.++...+..+++...++ ++|...... ..-.++.++|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~d--ii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLID--YIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCC--EEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 367788888886665 6677788999999998866544 777655442 33368899999999999987554
No 92
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=41.05 E-value=2.2e+02 Score=26.05 Aligned_cols=135 Identities=19% Similarity=0.332 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHh-CCCeEecCCCcC-----C-hHHHHHHHH---HHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHH
Q 020025 44 TEAVKESVVHAIEV-GYRHFDTAAIYQ-----S-EEPLGEAIA---QALRLGLIKSRDELFITSKLWFGHAHRQLVLPAL 113 (332)
Q Consensus 44 ~~~~~~~l~~Ale~-Gin~~Dta~~Yg-----s-e~~vG~al~---~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~l 113 (332)
.+.+++.+++.++. +.+++|.-..-. + ...+.++|. ++-.+|. .| ||. ...+.-+.+.+.+
T Consensus 119 adkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk--~R---fiG----itgypldvl~~~a 189 (342)
T KOG1576|consen 119 ADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGK--IR---FIG----ITGYPLDVLTECA 189 (342)
T ss_pred HHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCc--ee---Eee----ecccchHHHHHHH
Confidence 67888999999965 888888633222 2 344555554 3333343 12 222 2233334444444
Q ss_pred HHHHHhhCCCcccEEe--eccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcC
Q 020025 114 QTSLKNLGLEHIDLYL--IHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAK 191 (332)
Q Consensus 114 e~sL~~Lg~d~iDl~~--lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 191 (332)
+-+..++|+++ .|.- +.....++.|..++.+| +||.|-++-.+--+-+ .+
T Consensus 190 -----e~~~G~~dvvlsY~ry~------------------l~d~tLl~~~~~~~sk~----vgVi~AsalsmgLLt~-~g 241 (342)
T KOG1576|consen 190 -----ERGKGRLDVVLSYCRYT------------------LNDNTLLRYLKRLKSKG----VGVINASALSMGLLTN-QG 241 (342)
T ss_pred -----hcCCCceeeehhhhhhc------------------cccHHHHHHHHHHHhcC----ceEEehhhHHHHHhhc-CC
Confidence 45667899988 3422 12346788888888554 6888866555443333 33
Q ss_pred CCCeeeeeecCcccch-----HHHHHHHHHhCceE
Q 020025 192 IPPAVNQVELNPVWQQ-----KKLRDFCEKKGIHI 221 (332)
Q Consensus 192 ~~~~~~q~~~~~~~~~-----~~l~~~~~~~gi~v 221 (332)
.+ +++|..++ ....++|+++||.+
T Consensus 242 p~------~wHPaS~Elk~~a~~aa~~Cq~rnv~l 270 (342)
T KOG1576|consen 242 PP------PWHPASDELKEAAKAAAEYCQSRNVEL 270 (342)
T ss_pred CC------CCCCCCHHHHHHHHHHHHHHHHcCccH
Confidence 22 45555554 45678899998764
No 93
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=41.03 E-value=1e+02 Score=28.63 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEeccCCC
Q 020025 156 GVWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 156 ~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
+-++.+.++++.-.+. ..|=|.++...+..+++...++ ++|.....+ ..-..+...|+.+|+.++..+.+.+
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--vi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVK--VINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCC--EEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 4467788888876664 6678888999999888766544 667665442 2336889999999999998765654
No 94
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=40.51 E-value=2.4e+02 Score=24.29 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHhCCCeEecC----------CCcC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTA----------AIYQ-----SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQL 108 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta----------~~Yg-----se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~ 108 (332)
.++..+..+.+.++|+..+|-- +.|| ..+.+-+.++...+ .. . +-|+.|+.......+.
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~~--~---~~v~vk~r~~~~~~~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-AV--P---IPVTVKIRLGWDDEEE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-hc--C---CCEEEEEeeccCCchH
Confidence 6778888889999999988743 4566 24455555554411 11 1 4456665321111112
Q ss_pred HHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCC-cHHHHHHHH
Q 020025 109 VLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNF-ACKKLERLL 187 (332)
Q Consensus 109 i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~ 187 (332)
..+ +-+.|+..|+ |.+.+|....... . . ....|+.+.++++.-.+.-++.... +.+.+.+++
T Consensus 140 ~~~-~~~~l~~~Gv---d~i~v~~~~~~~~----------~-~--~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l 202 (231)
T cd02801 140 TLE-LAKALEDAGA---SALTVHGRTREQR----------Y-S--GPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCL 202 (231)
T ss_pred HHH-HHHHHHHhCC---CEEEECCCCHHHc----------C-C--CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHH
Confidence 222 2334555674 5566775422100 0 0 0113555666666666666665554 566777777
Q ss_pred HHcCC
Q 020025 188 ATAKI 192 (332)
Q Consensus 188 ~~~~~ 192 (332)
+....
T Consensus 203 ~~~ga 207 (231)
T cd02801 203 EQTGV 207 (231)
T ss_pred HhcCC
Confidence 65443
No 95
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=40.28 E-value=2.3e+02 Score=24.68 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC-ChHHHH--HHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ-SEEPLG--EAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNL 120 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg-se~~vG--~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~L 120 (332)
+++.....+.+.++|..++=|+..|+ .-..++ +.+++. -++. +..|...--.+.+...+-++.--.|+
T Consensus 131 ~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~-------v~~~--v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 131 DEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT-------VGDT--IGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH-------hccC--CeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 67788999999999999999999886 111122 223332 1222 34444322236688899999999999
Q ss_pred CCCc
Q 020025 121 GLEH 124 (332)
Q Consensus 121 g~d~ 124 (332)
|+++
T Consensus 202 Gts~ 205 (211)
T TIGR00126 202 GASA 205 (211)
T ss_pred Ccch
Confidence 9875
No 96
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=39.72 E-value=1.9e+02 Score=27.02 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEe
Q 020025 157 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~ 224 (332)
-++.+.+|++...+. +.|=+.++...+.++++...+ +++|...... ..-.++.+.|+++|+.++.+
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~--d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAV--DILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCC--CEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 366777788777665 666677888888888876543 4676665443 22367889999999987754
No 97
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=39.51 E-value=3.5e+02 Score=28.12 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE 123 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d 123 (332)
.+.+.++++.|-|.|++.+- .|.-+.. +.--+. ..++-|+..|..+ |-...-++.+..+--+-.
T Consensus 42 gEIaIRvFRa~tEL~~~tvA---iYseqD~-~sMHRq--------KADEaY~iGk~l~----PV~AYL~ideii~iak~~ 105 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTVA---IYSEQDR-LSMHRQ--------KADEAYLIGKGLP----PVGAYLAIDEIISIAKKH 105 (1176)
T ss_pred CcchhHHHHHHhhhcceEEE---EEeccch-hhhhhh--------ccccceecccCCC----chhhhhhHHHHHHHHHHc
Confidence 47788999999999999773 5653221 222221 5788888888743 333444444444444444
Q ss_pred cccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHH-----HHHHH-HcCCCCeee
Q 020025 124 HIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKL-----ERLLA-TAKIPPAVN 197 (332)
Q Consensus 124 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l-----~~~~~-~~~~~~~~~ 197 (332)
.+|.+ | |...- +.|--+.-+.+++.| |++||=|.--.+.+ .+.+. .++++ ++
T Consensus 106 ~vdav--H-PGYGF----------------LSErsdFA~av~~AG-i~fiGPspeVi~~mGDKv~AR~~Ai~agVp--vV 163 (1176)
T KOG0369|consen 106 NVDAV--H-PGYGF----------------LSERSDFAQAVQDAG-IRFIGPSPEVIDSMGDKVAARAIAIEAGVP--VV 163 (1176)
T ss_pred CCCee--c-CCccc----------------cccchHHHHHHHhcC-ceEeCCCHHHHHHhhhHHHHHHHHHHcCCC--cc
Confidence 56654 3 32110 122233344555555 68999765221111 11111 12332 22
Q ss_pred eeecCcccchHHHHHHHHHhCceEEEeccCCC
Q 020025 198 QVELNPVWQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 198 q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
.---.+...-++.++||+++|.+++.-..+++
T Consensus 164 PGTpgPitt~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 164 PGTPGPITTVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEeecccC
Confidence 11222233336889999999999999999988
No 98
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.51 E-value=1.9e+02 Score=25.56 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=82.1
Q ss_pred eeeCCCCCccCeecc--cccccCCCCChHH-HHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcE--
Q 020025 19 APLGSTGKTIPLVGF--GTAQFPFGAATEA-VKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDEL-- 93 (332)
Q Consensus 19 ~~lg~tg~~vs~lgl--G~~~~~~~~~~~~-~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~-- 93 (332)
++||. |+.++.|.+ |-...| +.. .++++--+++.|.+.. .|.+|..+-+.+++.-.-++ +=.+.
T Consensus 19 krLGG-GiP~GsL~lIEGd~~tG----KSvLsqr~~YG~L~~g~~v~----yvsTe~T~refi~qm~sl~y--dv~~~~l 87 (235)
T COG2874 19 KRLGG-GIPVGSLILIEGDNGTG----KSVLSQRFAYGFLMNGYRVT----YVSTELTVREFIKQMESLSY--DVSDFLL 87 (235)
T ss_pred hhccC-CCccCeEEEEECCCCcc----HHHHHHHHHHHHHhCCceEE----EEEechhHHHHHHHHHhcCC--CchHHHh
Confidence 45666 677765443 322211 333 4455555678888755 33456666667665422232 22232
Q ss_pred -----EEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 020025 94 -----FITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLG 168 (332)
Q Consensus 94 -----~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G 168 (332)
|+.+.+.+..-++...+.-++..++..+.-.-|++.+...+..... + ......+.+..+..|.++|
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~-------~--~~~~vl~fm~~~r~l~d~g 158 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY-------D--SEDAVLNFMTFLRKLSDLG 158 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc-------c--cHHHHHHHHHHHHHHHhCC
Confidence 3333333334445667777788888777777899999876543210 0 0123566778888899999
Q ss_pred CcceeccCCCc
Q 020025 169 LTKSIGVSNFA 179 (332)
Q Consensus 169 ~ir~iGvs~~~ 179 (332)
|+--+-+..+.
T Consensus 159 KvIilTvhp~~ 169 (235)
T COG2874 159 KVIILTVHPSA 169 (235)
T ss_pred CEEEEEeChhh
Confidence 98877776543
No 99
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=39.05 E-value=1.5e+02 Score=28.44 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEeccC
Q 020025 157 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
-++.+.+|++...+. ..|-|.++..++.++++...+ ++.|...... ..-.++.+.|+++|+.++.++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~av--dil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAV--DIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCC--cEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 367777788877665 667777788888888876554 4666665432 23368899999999999887754
No 100
>PRK00208 thiG thiazole synthase; Reviewed
Probab=38.91 E-value=2.9e+02 Score=24.80 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=75.1
Q ss_pred CeecccccccCCCCChHHHHHHHHHHHH-hCCCeEecCCCc----CChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC
Q 020025 29 PLVGFGTAQFPFGAATEAVKESVVHAIE-VGYRHFDTAAIY----QSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGH 103 (332)
Q Consensus 29 s~lglG~~~~~~~~~~~~~~~~l~~Ale-~Gin~~Dta~~Y----gse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~ 103 (332)
|+|.+||..+++ . +++..|++ .|-..+-+|=-. ..+..+-+.+ ++..+.+.-... -.
T Consensus 11 SRl~~Gtgky~s---~----~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i----------~~~~~~~lpNTa-G~ 72 (250)
T PRK00208 11 SRLLLGTGKYPS---P----QVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLL----------PPLGVTLLPNTA-GC 72 (250)
T ss_pred ccceEecCCCCC---H----HHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhc----------cccCCEECCCCC-CC
Confidence 689999988642 2 34555553 366555433211 1121222222 333343321111 13
Q ss_pred CChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHH
Q 020025 104 AHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKL 183 (332)
Q Consensus 104 ~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 183 (332)
.+.+...+-.+-..+-+++++|-+=.+..+... ..++.+++++.++|.++|.+- +=+|+-++...
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~l--------------lpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~a 137 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDDKTL--------------LPDPIETLKAAEILVKEGFVV-LPYCTDDPVLA 137 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCC--------------CcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHH
Confidence 445666666667778889998888877765332 235889999999999999864 33566677776
Q ss_pred HHHHHH
Q 020025 184 ERLLAT 189 (332)
Q Consensus 184 ~~~~~~ 189 (332)
.++.+.
T Consensus 138 k~l~~~ 143 (250)
T PRK00208 138 KRLEEA 143 (250)
T ss_pred HHHHHc
Confidence 666654
No 101
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=38.88 E-value=1.7e+02 Score=27.72 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEeccC
Q 020025 158 WEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 158 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
++.+.+|++...+. +.|=|.++...+..+++...++ ++|+..... ..-..+...|+.+|+.++..+.+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d--~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAAD--VFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCC--EEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 45555555554443 4555556666666665544332 444443322 12245666667777666554333
No 102
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=38.76 E-value=1.1e+02 Score=32.89 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHhhC--------------------------CCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 020025 106 RQLVLPALQTSLKNLG--------------------------LEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWE 159 (332)
Q Consensus 106 ~~~i~~~le~sL~~Lg--------------------------~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (332)
+..+.+.++.+|+.+| +....+++|..|...-+ +.....+|+
T Consensus 672 ~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmD------------P~arr~lW~ 739 (885)
T KOG0059|consen 672 RSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD------------PKARRHLWD 739 (885)
T ss_pred hhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC------------HHHHHHHHH
Confidence 4566667777777665 23567888888754321 234578999
Q ss_pred HHHHHHHcCCcceeccCCCcHHHHHHHHHHcC
Q 020025 160 AMEECQNLGLTKSIGVSNFACKKLERLLATAK 191 (332)
Q Consensus 160 ~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 191 (332)
.+.++++.|+ +|=+.+|+.++++.+.....
T Consensus 740 ii~~~~k~g~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 740 IIARLRKNGK--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred HHHHHHhcCC--EEEEEcCCHHHHHHHhhhhh
Confidence 9999999999 89999999999999887543
No 103
>PRK14017 galactonate dehydratase; Provisional
Probab=38.10 E-value=1.7e+02 Score=27.93 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEecc
Q 020025 158 WEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 158 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~ 226 (332)
++.+.+|.+...+. ..|=|.++...+..+++...+ +++|.....+ .+-.++.+.|+++|+.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 57788888887665 667777889999998886654 4677665543 2336889999999999988754
No 104
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.05 E-value=2.2e+02 Score=23.20 Aligned_cols=110 Identities=17% Similarity=0.292 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHH-HhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 020025 44 TEAVKESVVHAI-EVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL 122 (332)
Q Consensus 44 ~~~~~~~l~~Al-e~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 122 (332)
.+....++.+++ +.|+..+.+.-.=..|+++-.|+. ..-+++..+-. ..........+-+.|+..|.
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~---------~dv~vIgvSsl---~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE---------EDVDVIGVSSL---DGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh---------cCCCEEEEEec---cchHHHHHHHHHHHHHHhCC
Confidence 445567888888 678888766544446888888876 34455555554 23346788889999999999
Q ss_pred CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHH
Q 020025 123 EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLA 188 (332)
Q Consensus 123 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 188 (332)
+.+= ++.-...+ .++ +.+|++.|--+.++-.+--.+.+..++.
T Consensus 93 ~~i~-v~~GGvip------------------~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 93 EDIL-VVVGGVIP------------------PGD----YQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred cceE-EeecCccC------------------chh----HHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 8655 23333211 222 6788899999999987755555555543
No 105
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=37.58 E-value=1.8e+02 Score=25.95 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCC--cEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCC
Q 020025 71 EEPLGEAIAQALRLGLIKSRD--ELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKED 148 (332)
Q Consensus 71 e~~vG~al~~~~~~g~~~~R~--~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 148 (332)
..++.++++.... .+. .+.++..+.+.......+...+.+.+++.+++.- -+.+--. ....
T Consensus 69 ~~v~~~a~~~~~~-----~~~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEit-E~~~---------- 131 (256)
T COG2200 69 RWVLEEACRQLRT-----WPRAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RLVLEIT-ESAL---------- 131 (256)
T ss_pred HHHHHHHHHHHHh-----hhhcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eEEEEEe-Cchh----------
Confidence 3456666665421 222 4778777765444445677788888888886543 2222211 1100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceeccCCCcHH--HHHHHHHHcCCCCeeeeeecCccc--------ch--HHHHHHHHH
Q 020025 149 IEPLDYEGVWEAMEECQNLGLTKSIGVSNFACK--KLERLLATAKIPPAVNQVELNPVW--------QQ--KKLRDFCEK 216 (332)
Q Consensus 149 ~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~--~l~~~~~~~~~~~~~~q~~~~~~~--------~~--~~l~~~~~~ 216 (332)
-.+.+.+...+..|++.|- .|.+.+|... .+..+.+ ++|+++-+.-+... .. +.++..|++
T Consensus 132 --~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~ 204 (256)
T COG2200 132 --IDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHK 204 (256)
T ss_pred --hcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHH
Confidence 0124467889999999993 3556665532 2333332 44444433322221 11 578999999
Q ss_pred hCceEEEec
Q 020025 217 KGIHITAYS 225 (332)
Q Consensus 217 ~gi~v~a~~ 225 (332)
.|+.+++-+
T Consensus 205 l~~~vvaEG 213 (256)
T COG2200 205 LGLTVVAEG 213 (256)
T ss_pred CCCEEEEee
Confidence 999999843
No 106
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.32 E-value=4.4e+02 Score=26.37 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=70.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC-CcccEEeeccCCCCCCCCCCCCCC
Q 020025 68 YQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL-EHIDLYLIHFPVSLKPGTGFPFSK 146 (332)
Q Consensus 68 Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~-d~iDl~~lH~p~~~~~~~~~~~~~ 146 (332)
+|+++.+=++|++..+.- +.+-++|.|-+.+ +-|-..++...++++. .-++++.+|.|.....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~-----eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~-------- 130 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE---RPDLIVLTPTCTS-----SILQEDLQNFVDRASIESDSDVILADVNHYRVN-------- 130 (513)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEECCCCch-----hhhhcCHHHHHHHhhcccCCCEEEeCCCCCccc--------
Confidence 356656666666543322 4555666666532 2233333333333321 1368999999854321
Q ss_pred CCCCCCCHHHHHHHHHH-H--------------HHcCCcceeccCC------CcHHHHHHHHHHcCCCCeeee-------
Q 020025 147 EDIEPLDYEGVWEAMEE-C--------------QNLGLTKSIGVSN------FACKKLERLLATAKIPPAVNQ------- 198 (332)
Q Consensus 147 ~~~~~~~~~~~~~~L~~-l--------------~~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~~~q------- 198 (332)
.. ...+.+++++-+ + +.+++|.-||.++ .+..++.++++..++.+.++-
T Consensus 131 -~~--~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~ 207 (513)
T CHL00076 131 -EL--QAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVE 207 (513)
T ss_pred -HH--HHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHH
Confidence 00 001122222221 1 1346788898774 345678888886665532111
Q ss_pred -------eecCccc-ch--HHHHHHHH-HhCceEEEeccCCC
Q 020025 199 -------VELNPVW-QQ--KKLRDFCE-KKGIHITAYSPLGA 229 (332)
Q Consensus 199 -------~~~~~~~-~~--~~l~~~~~-~~gi~v~a~~~l~~ 229 (332)
..+|+.. +. ..+.++.+ +.|++++...|+|-
T Consensus 208 di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi 249 (513)
T CHL00076 208 DLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI 249 (513)
T ss_pred HHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH
Confidence 1122222 11 22344443 56999887777754
No 107
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.28 E-value=2.4e+02 Score=26.47 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=82.9
Q ss_pred CCcCceeeCCCCCccCeecccccccCCCCChHHHHHHHHHHHHhCCC--eEecCCCcCChHHHHHHHHHHHhcCCCCCCC
Q 020025 14 VSIPEAPLGSTGKTIPLVGFGTAQFPFGAATEAVKESVVHAIEVGYR--HFDTAAIYQSEEPLGEAIAQALRLGLIKSRD 91 (332)
Q Consensus 14 ~~m~~~~lg~tg~~vs~lglG~~~~~~~~~~~~~~~~l~~Ale~Gin--~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~ 91 (332)
.+|++..++ .|..+-..|+|+ +| .-.++.|-..|.+ .||++.. -=-++++.+ | -|
T Consensus 172 spLk~~g~~-pG~~vgI~GlGG--LG--------h~aVq~AKAMG~rV~vis~~~~-----kkeea~~~L---G----Ad 228 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGG--LG--------HMAVQYAKAMGMRVTVISTSSK-----KKEEAIKSL---G----AD 228 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcc--cc--------hHHHHHHHHhCcEEEEEeCCch-----hHHHHHHhc---C----cc
Confidence 578888887 588888889887 44 2246777777765 6777642 122355544 3 45
Q ss_pred cEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc
Q 020025 92 ELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTK 171 (332)
Q Consensus 92 ~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 171 (332)
.+++++|- ..+.+++..++. .+.+.+--+--| ..-..+.-+|..|++-
T Consensus 229 ~fv~~~~d-------~d~~~~~~~~~d-g~~~~v~~~a~~------------------------~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 229 VFVDSTED-------PDIMKAIMKTTD-GGIDTVSNLAEH------------------------ALEPLLGLLKVNGTLV 276 (360)
T ss_pred eeEEecCC-------HHHHHHHHHhhc-Ccceeeeecccc------------------------chHHHHHHhhcCCEEE
Confidence 55555542 345555555554 444443333111 2234566788999999
Q ss_pred eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccc---hHHHHHHHHHhCceE
Q 020025 172 SIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ---QKKLRDFCEKKGIHI 221 (332)
Q Consensus 172 ~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~v 221 (332)
.+|+-.. +-.+.-.. .-+-...+.-+..-. .+++++||.+++|..
T Consensus 277 ~vg~p~~-~~~~~~~~----lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 277 LVGLPEK-PLKLDTFP----LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEeCcCC-cccccchh----hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 9999885 22211110 000011222232211 268899999988643
No 108
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=36.96 E-value=3.6e+02 Score=25.29 Aligned_cols=36 Identities=8% Similarity=-0.081 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCcceeccCC-CcHHHHHHHHHHcCCC
Q 020025 158 WEAMEECQNLGLTKSIGVSN-FACKKLERLLATAKIP 193 (332)
Q Consensus 158 ~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~ 193 (332)
|+....+++.=++--|++.+ ++++.++++++....+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D 310 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHAD 310 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCC
Confidence 55555666554566677776 4678888888766554
No 109
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=36.63 E-value=1.9e+02 Score=26.45 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCeEecCCC---------cC--Ch-------HHHHHHHHHHHhcCCCCCCCcEEEEeccCC----C
Q 020025 45 EAVKESVVHAIEVGYRHFDTAAI---------YQ--SE-------EPLGEAIAQALRLGLIKSRDELFITSKLWF----G 102 (332)
Q Consensus 45 ~~~~~~l~~Ale~Gin~~Dta~~---------Yg--se-------~~vG~al~~~~~~g~~~~R~~~~I~tK~~~----~ 102 (332)
+...++|++-.++||.+|=-+.. ++ -+ ..+|+.+++ ..+.++.--+. .
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~----------~~iRls~HP~qf~vLn 114 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE----------NGIRLSMHPDQFTVLN 114 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH----------TT-EEEE---TT--TT
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH----------cCCeEEecCCcceeCC
Confidence 45667888888999999965542 12 11 234544443 34556554421 1
Q ss_pred CCChhhHHHHHH------HHHHhhCCCcc--cEEeeccCC
Q 020025 103 HAHRQLVLPALQ------TSLKNLGLEHI--DLYLIHFPV 134 (332)
Q Consensus 103 ~~~~~~i~~~le------~sL~~Lg~d~i--Dl~~lH~p~ 134 (332)
...++.+.++++ +.|+.||.+.- ..+.||-=.
T Consensus 115 Sp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG 154 (275)
T PF03851_consen 115 SPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGG 154 (275)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCC
Confidence 224566777766 45888999877 889999643
No 110
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=36.06 E-value=2.2e+02 Score=25.45 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCcceeccC---CCcHHHH
Q 020025 108 LVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNL-GLTKSIGVS---NFACKKL 183 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs---~~~~~~l 183 (332)
.-+.++-+.|.++|++++++-+........ +.. . .... ..++.++.+++. +.++...++ ......+
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~----~~~--~-~~~~---~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i 91 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGSS----LNY--G-FAAH---TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDL 91 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCcc----ccc--C-CCCC---ChHHHHHHHHHhccCCEEEEEecCCccCHHHH
Confidence 345556666899999999998653221100 000 0 0011 234555555333 346666554 2235556
Q ss_pred HHHHHHcCCCCeeeeeecCc--ccchHHHHHHHHHhCceEEEe
Q 020025 184 ERLLATAKIPPAVNQVELNP--VWQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~--~~~~~~l~~~~~~~gi~v~a~ 224 (332)
+.+.+. .+ ..+.+.++. ...-.+.+++++++|..+...
T Consensus 92 ~~a~~~-g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 92 KMAADL-GV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHc-CC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 665543 33 344433322 222367888899999876554
No 111
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=35.93 E-value=3.3e+02 Score=24.52 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-cceeccCCCcHHHHHHHH
Q 020025 109 VLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGL-TKSIGVSNFACKKLERLL 187 (332)
Q Consensus 109 i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~ 187 (332)
-+..+-+.|.++|++.|.+-. |.. ..+.+++.+.+.+.++ .+..+....+.+.++.+.
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~---P~~------------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~ 81 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS---PAA------------------SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAV 81 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC---CCC------------------CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHH
Confidence 345555669999988888873 522 1344555566655444 344555666778888887
Q ss_pred HHcCCCCeeeeeecCcccc---------h-----HHHHHHHHHhCceEEEec
Q 020025 188 ATAKIPPAVNQVELNPVWQ---------Q-----KKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 188 ~~~~~~~~~~q~~~~~~~~---------~-----~~l~~~~~~~gi~v~a~~ 225 (332)
+. +++....-++.|.... + .+++.+++++|+.+....
T Consensus 82 ~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 82 ET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred Hc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 74 3332222222222111 1 356788999998766644
No 112
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=35.83 E-value=3.3e+02 Score=24.46 Aligned_cols=128 Identities=18% Similarity=0.136 Sum_probs=74.9
Q ss_pred CeecccccccCCCCChHHHHHHHHHHHH-hCCCeEecCCCc----C-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC
Q 020025 29 PLVGFGTAQFPFGAATEAVKESVVHAIE-VGYRHFDTAAIY----Q-SEEPLGEAIAQALRLGLIKSRDELFITSKLWFG 102 (332)
Q Consensus 29 s~lglG~~~~~~~~~~~~~~~~l~~Ale-~Gin~~Dta~~Y----g-se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~ 102 (332)
|+|.+||..+++ . +++..|++ .|-..+-+|=-- . .+..+-+.+ +.+++.+.-.. .-
T Consensus 10 SRl~~Gtgky~s---~----~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i----------~~~~~~~lpNT-aG 71 (248)
T cd04728 10 SRLLLGTGKYPS---P----AIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLL----------DKSGYTLLPNT-AG 71 (248)
T ss_pred cceEEecCCCCC---H----HHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhc----------cccCCEECCCC-CC
Confidence 689999988742 2 35556663 466555333111 1 112222222 22333222111 11
Q ss_pred CCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHH
Q 020025 103 HAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKK 182 (332)
Q Consensus 103 ~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 182 (332)
..+.+...+-.+-..+-+|+++|-+=.+..+...- -++.+++++.++|.++|.+- +=+|+-++..
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Ll--------------pd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ 136 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLL--------------PDPIETLKAAEILVKEGFTV-LPYCTDDPVL 136 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccc--------------cCHHHHHHHHHHHHHCCCEE-EEEeCCCHHH
Confidence 33455666666677788899999888877653322 25789999999999999864 3356667777
Q ss_pred HHHHHHH
Q 020025 183 LERLLAT 189 (332)
Q Consensus 183 l~~~~~~ 189 (332)
..++.+.
T Consensus 137 ar~l~~~ 143 (248)
T cd04728 137 AKRLEDA 143 (248)
T ss_pred HHHHHHc
Confidence 6666654
No 113
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.52 E-value=2.1e+02 Score=27.33 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=60.3
Q ss_pred cEEeeccCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHH-HcCC---cceeccCCC--cHHHHHHHHHHcC-C--
Q 020025 126 DLYLIHFPVSLKPGTGFPFSKEDIEP----LDYEGVWEAMEECQ-NLGL---TKSIGVSNF--ACKKLERLLATAK-I-- 192 (332)
Q Consensus 126 Dl~~lH~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~l~-~~G~---ir~iGvs~~--~~~~l~~~~~~~~-~-- 192 (332)
=.+-||.++.... ..+.+ ..++++++++.++. +.|+ |+|+=+.+. +.+++.++.+... .
T Consensus 240 LavSLha~d~e~R--------~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~ 311 (373)
T PRK14459 240 LAVSLHAPDDELR--------DELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGG 311 (373)
T ss_pred EEEEeCCCCHHHH--------HHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccC
Confidence 3477898865432 11222 45789999988876 4464 455544433 4555555544332 2
Q ss_pred -CCeeeeeecCcccc----h------HHHHHHHHHhCceEEEeccCCC
Q 020025 193 -PPAVNQVELNPVWQ----Q------KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 193 -~~~~~q~~~~~~~~----~------~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
...++-++||+... . .++.+..+++||.+......|.
T Consensus 312 ~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 312 GWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred CCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 45688889998532 1 3567778899999999888765
No 114
>PRK06740 histidinol-phosphatase; Validated
Probab=35.41 E-value=3.8e+02 Score=25.07 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHcCCcceec
Q 020025 111 PALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLD----YEGVWEAMEECQNLGLTKSIG 174 (332)
Q Consensus 111 ~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~l~~~G~ir~iG 174 (332)
..++..|.....||+ +.-+|+.+...-.. +...+.+...+ .....+.+.++.+.|.+..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~--~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDN--PDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCC--ccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 446666666777777 77778764211000 00000000111 233556788888888887777
No 115
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.36 E-value=3.4e+02 Score=25.47 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCcc-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEec
Q 020025 157 VWEAMEECQNLGLTK-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~ 225 (332)
-++.+.+|++..-+. +.|=|.++...+..+++...++ ++|.....+ ..-..+.+.|+++|+.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVD--IIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCC--EEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 367778887776554 5566677888888887755443 666654432 223678899999999988655
No 116
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=35.29 E-value=1.1e+02 Score=27.03 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCcceecc----CCCcHHHHHHHHHHcCCCCeeeeeecCcccch--HHHHHHHHHhCceEEEecc
Q 020025 153 DYEGVWEAMEECQNLGLTKSIGV----SNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 153 ~~~~~~~~L~~l~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~~ 226 (332)
..++..++|.+++ +.+|.. |.+....++.+.+..++. .|.|+|.. .+++...-+.|..++.-++
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4677888888888 445543 445556677777766654 56677763 6777777777776666666
Q ss_pred CCCCCCCC---CCcc-ccchHHHHHHHHHcCCCHH
Q 020025 227 LGAKGTIW---GTNR-VMECQMLKEIANAKGKSVA 257 (332)
Q Consensus 227 l~~~G~l~---~~~~-~~~~~~l~~la~~~~~s~~ 257 (332)
-+. |+-. |+.- ....+.+..+.++||+.|+
T Consensus 144 sa~-gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAE-GLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ecc-CCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 655 5431 2211 1124678888888888764
No 117
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=35.10 E-value=1.3e+02 Score=26.81 Aligned_cols=97 Identities=15% Similarity=0.288 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCC---------HHHHHHHHHHhCC--CEEEeCCC
Q 020025 208 KKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKS---------VAQVSLRWVYQQG--VSLVVKSF 276 (332)
Q Consensus 208 ~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s---------~~qlal~~~l~~~--~~~i~g~~ 276 (332)
.++.++|+++||.+++ +|+.- +.+..+ .++++. ..--.|+++-+.+ +..=.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 5788889999998887 56643 222222 233220 1122566666666 55568999
Q ss_pred CHHHHHHhHccc---------------CCCC--CHHHHHHHhccCCCCCCCCCCcccCCCC
Q 020025 277 NKERMKENLDIF---------------YWEL--SAEELQKIEQIPQYRGSRSEEHVSEDGP 320 (332)
Q Consensus 277 ~~~~l~~nl~a~---------------~~~L--~~e~~~~i~~l~~~~~~~~~~~~~~~~~ 320 (332)
+.+++++.++.+ ..|- .+-.+..|..+.+.+. .+--|..|..+
T Consensus 124 tl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 999999999887 2222 2334555555554443 33345555554
No 118
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=35.07 E-value=4.7e+02 Score=26.12 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCC
Q 020025 68 YQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKE 147 (332)
Q Consensus 68 Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 147 (332)
+|+++.+-+++++..... +.+-++|.|-+. ++-|-..++...++++.+ +.++.++.|.....
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC~-----seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~--------- 128 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSCT-----AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVK--------- 128 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCcH-----HHHhccCHHHHHHHhCCC-CCEEEEecCCcccc---------
Confidence 456667777777654332 344456666552 344444555555556543 67999998865432
Q ss_pred CCCCCCHHHHHHHHHH-HH-----------HcCCcceeccCC------CcHHHHHHHHHHcCCCC
Q 020025 148 DIEPLDYEGVWEAMEE-CQ-----------NLGLTKSIGVSN------FACKKLERLLATAKIPP 194 (332)
Q Consensus 148 ~~~~~~~~~~~~~L~~-l~-----------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~ 194 (332)
.. ...+.++.+|-+ +. +.+.|.-||.++ .+..++.++++..++.+
T Consensus 129 ~~--~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~v 191 (519)
T PRK02910 129 EN--WAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDV 191 (519)
T ss_pred cc--hHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeE
Confidence 00 112223333222 21 235688888765 23466777888766553
No 119
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.97 E-value=3.4e+02 Score=25.37 Aligned_cols=63 Identities=10% Similarity=0.002 Sum_probs=41.8
Q ss_pred HHHHcCCcceeccCCCcHHHHHHHHHHc-----CCCCeeeeeecCcccchHHHHHHHHHhCceEEEec
Q 020025 163 ECQNLGLTKSIGVSNFACKKLERLLATA-----KIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 163 ~l~~~G~ir~iGvs~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 225 (332)
..-+.|-+..||....+++++++.++.. +-++-+|-+.+.......+.++.|.+.++.++..+
T Consensus 22 AVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 22 AVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 3446788899998888999888776433 22333443332221113578999999999999754
No 120
>PLN02444 HMP-P synthase
Probab=34.96 E-value=5e+02 Score=26.35 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHhCCC-eEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEec--------c--CCCCCChhhHHHH
Q 020025 44 TEAVKESVVHAIEVGYR-HFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSK--------L--WFGHAHRQLVLPA 112 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin-~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK--------~--~~~~~~~~~i~~~ 112 (332)
.++-.+=+..|++.|-. ..|-+.. |.-..+-+++-+ ...+-|.|- + ...+.+.+.+.+.
T Consensus 236 ie~EveK~~~A~~~GADTvMDLSTG-gdi~~iR~~Il~---------~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ 305 (642)
T PLN02444 236 IEEEVYKLQWATMWGADTVMDLSTG-RHIHETREWILR---------NSPVPVGTVPIYQALEKVDGIAENLTWEVFRET 305 (642)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccCC-CCHHHHHHHHHH---------cCCCCccCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 44445557899999975 5666532 322222223211 112222221 1 1235567778888
Q ss_pred HHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCC
Q 020025 113 LQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 192 (332)
Q Consensus 113 le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 192 (332)
+++..+ +-+|.+-+|.- -..+.++.++ + |..|+-+-.-.-+..+.....
T Consensus 306 ieeQae----qGVDfmTIH~G----------------------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~- 354 (642)
T PLN02444 306 LIEQAE----QGVDYFTIHAG----------------------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH- 354 (642)
T ss_pred HHHHHH----hCCCEEEEChh----------------------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC-
Confidence 887776 55888999963 2455555554 3 778887777666666654332
Q ss_pred CCeeeeeecCcccch-HHHHHHHHHhCceEEE
Q 020025 193 PPAVNQVELNPVWQQ-KKLRDFCEKKGIHITA 223 (332)
Q Consensus 193 ~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a 223 (332)
.=|++..+ .++++.|++++|.+-.
T Consensus 355 -------kENPlYe~FD~ileI~k~YDVtlSL 379 (642)
T PLN02444 355 -------KENFAYEHWDDILDICNQYDIALSI 379 (642)
T ss_pred -------CcCchHHHHHHHHHHHHHhCeeeec
Confidence 22444443 6799999999998854
No 121
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.92 E-value=2.1e+02 Score=26.97 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHc-CC---ccee---ccCCCcHHHHHHHHHHcC-CCCeeeeeecCcccch----------HHHHHH
Q 020025 152 LDYEGVWEAMEECQNL-GL---TKSI---GVSNFACKKLERLLATAK-IPPAVNQVELNPVWQQ----------KKLRDF 213 (332)
Q Consensus 152 ~~~~~~~~~L~~l~~~-G~---ir~i---Gvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~~ 213 (332)
..++++.+++.++.+. |+ +-|+ || |-+++++.++.+... .+..++-++||+.... ..+.+.
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~ 301 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARY 301 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHH
Confidence 4588888888886554 42 1333 33 346777777776543 5566788888875321 356677
Q ss_pred HHHhCceEEEeccCCC
Q 020025 214 CEKKGIHITAYSPLGA 229 (332)
Q Consensus 214 ~~~~gi~v~a~~~l~~ 229 (332)
.+++||.+......|.
T Consensus 302 L~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 302 LHRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHHCCceEEEECCCCC
Confidence 8899999999988865
No 122
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=34.28 E-value=1.3e+02 Score=30.12 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccC
Q 020025 152 LDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 152 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
.+.+++.+-+.+.++..+|+.||+-.+...++..+++..+++++.+.-.|.-+...-.-++..-..|+-+..-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 3567788888888888899999999988888888888887774443223332222223344444555555544443
No 123
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=34.19 E-value=6.1e+02 Score=28.38 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCCc--ceeccCCCcHHHH
Q 020025 107 QLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN-LGLT--KSIGVSNFACKKL 183 (332)
Q Consensus 107 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~G~i--r~iGvs~~~~~~l 183 (332)
+.+.+..++. .+-|.+.||+=.= .+ ..+-++.+..+..+.+ +-.+ --|-+-+++++.+
T Consensus 368 ~~a~~~A~~q-ve~GA~iIDVn~~-~~-----------------~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~ 428 (1178)
T TIGR02082 368 DEALDIAKQQ-VENGAQILDINVD-YG-----------------MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVL 428 (1178)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCC-CC-----------------CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHH
Confidence 3444444433 3578899998642 11 1223344444444443 3222 2377888999999
Q ss_pred HHHHHHcCCCCeeeeeecCccc-chHHHHHHHHHhCceEEEeccCCCCCC
Q 020025 184 ERLLATAKIPPAVNQVELNPVW-QQKKLRDFCEKKGIHITAYSPLGAKGT 232 (332)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~~-~~~~l~~~~~~~gi~v~a~~~l~~~G~ 232 (332)
+.+++.....+.+|-++.-... +-..+++.|+++|..++.+.--.. |.
T Consensus 429 eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~-G~ 477 (1178)
T TIGR02082 429 EAGLKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEE-GQ 477 (1178)
T ss_pred HHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC-CC
Confidence 9999986666778865543221 224799999999999999764333 43
No 124
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=33.44 E-value=1.3e+02 Score=27.13 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=36.6
Q ss_pred CCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHH
Q 020025 122 LEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERL 186 (332)
Q Consensus 122 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 186 (332)
....|+++|..|...-+ ...-.++++-|.+|+++|+ .|=+.+|+...+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD------------~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 155 AQNPDLLLLDEPFTGVD------------VAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred ccCCCEEEecCCcccCC------------HHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 45689999998865432 2335678899999999987 666777787665543
No 125
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=33.14 E-value=1.1e+02 Score=26.44 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHH--cCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccC
Q 020025 154 YEGVWEAMEECQN--LGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 154 ~~~~~~~L~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
.+.+...++.+++ .+. -|.+-+++++.++++++. +.++..+...+.. ..++++.++++|..++++..-
T Consensus 56 ~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 56 MERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence 3345555666665 233 577888999999999998 5554444333322 567999999999999997666
No 126
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.91 E-value=3.3e+02 Score=23.65 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHH
Q 020025 108 LVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLL 187 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 187 (332)
..+..+-+.|.++|+++|++- .|... ....+.++.+.+.... .+..+++......++..+
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~---------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~ 73 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFAS---------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERAV 73 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSS---------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccC---------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHH
Confidence 455566667999999999988 22111 1133445555555555 455566666666666644
Q ss_pred H---HcCCCCeeeeeecCccc--------------chHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHH
Q 020025 188 A---TAKIPPAVNQVELNPVW--------------QQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIAN 250 (332)
Q Consensus 188 ~---~~~~~~~~~q~~~~~~~--------------~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~ 250 (332)
+ ..+.+...+-...|... .-.+.+.+++++|..+.. +.-.. + ....+.+.++++
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~-~~~~~-~-------~~~~~~~~~~~~ 144 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF-GCEDA-S-------RTDPEELLELAE 144 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE-EETTT-G-------GSSHHHHHHHHH
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe-Ccccc-c-------cccHHHHHHHHH
Confidence 4 34444333334444421 114678999999998833 33322 1 123345555443
Q ss_pred HcCCCHHHHHHHHHHhCC-CEEE---eCCCCHHHHHHhHcccCC
Q 020025 251 AKGKSVAQVSLRWVYQQG-VSLV---VKSFNKERMKENLDIFYW 290 (332)
Q Consensus 251 ~~~~s~~qlal~~~l~~~-~~~i---~g~~~~~~l~~nl~a~~~ 290 (332)
+ +... .. ...| .|.-+|+++.+.++.+..
T Consensus 145 ~--------~~~~---g~~~i~l~Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 145 A--------LAEA---GADIIYLADTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp H--------HHHH---T-SEEEEEETTS-S-HHHHHHHHHHHHH
T ss_pred H--------HHHc---CCeEEEeeCccCCcCHHHHHHHHHHHHH
Confidence 2 2222 12 2333 477888888888777643
No 127
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=32.33 E-value=2.1e+02 Score=27.65 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=33.0
Q ss_pred hCCCeEecCCCcC------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEee
Q 020025 57 VGYRHFDTAAIYQ------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLI 130 (332)
Q Consensus 57 ~Gin~~Dta~~Yg------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~l 130 (332)
.|-+|+|....|+ +.+.+=+++++ +-++++.++-... ......+-+-|-.+-- ..|-+++
T Consensus 40 ~G~~YlDf~~Giav~~lGH~hP~iv~al~~--------Q~~kl~h~sn~~~-----~~~~~~la~~L~~~s~-~~d~vff 105 (404)
T COG4992 40 QGREYLDFAAGIAVNNLGHCHPALVEALKE--------QAEKLWHVSNLFY-----NEPQAELAEKLVELSP-FADRVFF 105 (404)
T ss_pred CCCEeeeeccceeeeccCCCCHHHHHHHHH--------HHHHhhhcccccC-----ChHHHHHHHHHHhhCc-cccEEEE
Confidence 4666788777776 45666677764 3455555544432 2233334444443322 3666665
Q ss_pred cc
Q 020025 131 HF 132 (332)
Q Consensus 131 H~ 132 (332)
-+
T Consensus 106 ~N 107 (404)
T COG4992 106 CN 107 (404)
T ss_pred cC
Confidence 54
No 128
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=32.22 E-value=1.7e+02 Score=23.92 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--cCCcceeccCCCcHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN--LGLTKSIGVSNFACKK 182 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvs~~~~~~ 182 (332)
+.+.+.+.+++--+.+|.+ ++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.
T Consensus 27 tl~~i~~~~~~~a~~~g~~-~~~~QSN~---------------------EGelId~i~~a~~~~dgiIINpga~THtSiA 84 (146)
T PRK13015 27 TLADVEALCRAAAEALGLE-VEFRQSNH---------------------EGELIDWIHEARGDVAGIVINPGAYTHTSVA 84 (146)
T ss_pred CHHHHHHHHHHHHHHcCCE-EEEEeeCc---------------------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHH
Confidence 5688999999999999964 66666432 3578888888754 3666666888888888
Q ss_pred HHHHHHHcCCCCeeeeeecCcccch
Q 020025 183 LERLLATAKIPPAVNQVELNPVWQQ 207 (332)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~ 207 (332)
+..+++....| ++.+.++..+.+
T Consensus 85 l~DAl~~~~~P--~VEVHiSNi~aR 107 (146)
T PRK13015 85 IRDALAALELP--VIEVHISNVHAR 107 (146)
T ss_pred HHHHHHcCCCC--EEEEEcCCcccc
Confidence 88888877665 777777655443
No 129
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=32.22 E-value=58 Score=23.87 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHH
Q 020025 107 QLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERL 186 (332)
Q Consensus 107 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 186 (332)
+.+-...+.....||....|+..+..-.+.+ ..+.+.+.|...++.. | ...+...+..+
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~---------------l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~a 68 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHN---------------VQSQIVEALVKWRQRF-----G-KKATVQSLIQS 68 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhc-----C-CCCcHHHHHHH
Confidence 3455667788889999999988886532211 1467888899988863 2 34578888888
Q ss_pred HHHcCCCCeeee
Q 020025 187 LATAKIPPAVNQ 198 (332)
Q Consensus 187 ~~~~~~~~~~~q 198 (332)
+..+++++.+.|
T Consensus 69 L~~~~~~~~~~~ 80 (83)
T cd08319 69 LKAVEVDPSVLQ 80 (83)
T ss_pred HHHcCCCHHHHH
Confidence 888887776654
No 130
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=32.18 E-value=96 Score=30.77 Aligned_cols=128 Identities=19% Similarity=0.102 Sum_probs=75.0
Q ss_pred HHHHHHHHhCCCeEe--cCCCc---C-------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCC-Chhh-------
Q 020025 49 ESVVHAIEVGYRHFD--TAAIY---Q-------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHA-HRQL------- 108 (332)
Q Consensus 49 ~~l~~Ale~Gin~~D--ta~~Y---g-------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~-~~~~------- 108 (332)
+-..+..+.|++.+= ||..| | +...+..+-++.+. +. -+.++||++-++.-.. .|..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g-~~--L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG-GD--LAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST-TS---TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC-CC--CcceEEEEecccccccchHHHHHhcCce
Confidence 345666778888663 55555 2 34566667677655 33 5888999998864321 0000
Q ss_pred ---HHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHH
Q 020025 109 ---VLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLER 185 (332)
Q Consensus 109 ---i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~ 185 (332)
++-.-++.-+|+.+.|+|.+. .+++++++..++.+++|+...||+-..-.+.+++
T Consensus 183 ~l~vEvd~~ri~kR~~~g~ld~~~----------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~ 240 (546)
T PF01175_consen 183 GLIVEVDPSRIEKRLEQGYLDEVT----------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEE 240 (546)
T ss_dssp EEEEES-HHHHHHHHHTTSSSEEE----------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHH
T ss_pred EEEEEECHHHHHHHHhCCCeeEEc----------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHH
Confidence 011223445688889999874 1388999999999999999999999988999999
Q ss_pred HHHHcC-CCCeeeeeec
Q 020025 186 LLATAK-IPPAVNQVEL 201 (332)
Q Consensus 186 ~~~~~~-~~~~~~q~~~ 201 (332)
+++..- +++..-|+..
T Consensus 241 l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 241 LVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHTT---SEE---SST
T ss_pred HHHcCCCCCcccCCCcc
Confidence 988643 2233446654
No 131
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=32.15 E-value=5.1e+02 Score=25.63 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE 123 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d 123 (332)
++-....++.|.++||..|=..+.-.--+.+-.+++.....|. .-.+.|+-... ..++.+...+.+++ +..+|.|
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~---~~~~~i~yt~s-p~~t~~y~~~~a~~-l~~~Gad 178 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK---EAQLCIAYTTS-PVHTLNYYLSLVKE-LVEMGAD 178 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC---EEEEEEEEEeC-CcCcHHHHHHHHHH-HHHcCCC
Confidence 5677788999999999988777666533333334433322252 11133333322 23445555555555 4567854
Q ss_pred cccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcH
Q 020025 124 HIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFAC 180 (332)
Q Consensus 124 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~ 180 (332)
.+.|-.... -+.+.++.+-+..+++...+ -||+-.|+.
T Consensus 179 ---~I~IkDtaG---------------~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt 216 (468)
T PRK12581 179 ---SICIKDMAG---------------ILTPKAAKELVSGIKAMTNL-PLIVHTHAT 216 (468)
T ss_pred ---EEEECCCCC---------------CcCHHHHHHHHHHHHhccCC-eEEEEeCCC
Confidence 444433211 13356666666667665443 478777773
No 132
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=31.47 E-value=4.3e+02 Score=24.50 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHH----HHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEP----LGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKN 119 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~----vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~ 119 (332)
.++..++++.+.+.|+..|--+ |-|++ +-+.++...+.+ ...++.|+|-.. .+.+ .-+.|..
T Consensus 47 ~eei~~li~~~~~~Gv~~I~~t---GGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~~-~~~~L~~ 112 (329)
T PRK13361 47 LEELAWLAQAFTELGVRKIRLT---GGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLAR-FAAELAD 112 (329)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE---CcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHHH-HHHHHHH
Confidence 6788899999999999877543 32222 223333221111 122466666531 1222 4455667
Q ss_pred hCCCcccEEeeccCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHcCC
Q 020025 120 LGLEHIDLYLIHFPVSLKPGTGFPFSKEDIE-PLDYEGVWEAMEECQNLGL 169 (332)
Q Consensus 120 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~G~ 169 (332)
.|++++- +-|+..++..- +.++ .-.++.++++++.+++.|.
T Consensus 113 aGl~~v~-ISlDs~~~e~~--------~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 113 AGLKRLN-ISLDTLRPELF--------AALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred cCCCeEE-EEeccCCHHHh--------hhhcCCCCHHHHHHHHHHHHHcCC
Confidence 7877765 34554432110 0011 1236788888888888774
No 133
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=31.40 E-value=3.4e+02 Score=26.27 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHc------CCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEecc
Q 020025 156 GVWEAMEECQNL------GLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 156 ~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~ 226 (332)
+.++.+.+|++. ..=-..+=|.++...+.++++....+ ++|+..+-+ ..-.++.++|+.+||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d--~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGH--MVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCC--EEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 456777777765 33344566777889999888866544 777766543 3346889999999999998766
Q ss_pred C
Q 020025 227 L 227 (332)
Q Consensus 227 l 227 (332)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 134
>PRK07534 methionine synthase I; Validated
Probab=31.33 E-value=4.5e+02 Score=24.68 Aligned_cols=210 Identities=11% Similarity=0.049 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCChHH-------------HHHHH---HHHHhcCCCCCCCcEEEEeccCCCC----
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQSEEP-------------LGEAI---AQALRLGLIKSRDELFITSKLWFGH---- 103 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~-------------vG~al---~~~~~~g~~~~R~~~~I~tK~~~~~---- 103 (332)
++...++=+..+++|-+.+-|.....+-.. .-.+. ++.. .. ...+++|+.-+++..
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~-~~---~~~~~~VaGsIGP~g~~l~ 119 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVA-DK---AGRKVIVAGSVGPTGEIME 119 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hh---cCCccEEEEecCCCccccC
Confidence 556666666667999999987654223111 11111 1111 01 123578888886532
Q ss_pred ----CChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCc
Q 020025 104 ----AHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFA 179 (332)
Q Consensus 104 ----~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 179 (332)
.+.+.+.+.....++.|--.-+|++++--. ..+.|+..+++.+++.|+=-.+.++..+
T Consensus 120 ~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~------------------p~l~E~~a~~~~~~~~~~Pv~vSft~~~ 181 (336)
T PRK07534 120 PMGALTHALAVEAFHEQAEGLKAGGADVLWVETI------------------SAPEEIRAAAEAAKLAGMPWCGTMSFDT 181 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------CCHHHHHHHHHHHHHcCCeEEEEEEECC
Confidence 245567777777777774456999999854 2367777777778777765555554422
Q ss_pred ---------HHHHHHHHHHcCCCCeeeeeecCc-ccc-hHHHHHHHHHh-CceEEEeccCCCCCCCCCCccccchHHHHH
Q 020025 180 ---------CKKLERLLATAKIPPAVNQVELNP-VWQ-QKKLRDFCEKK-GIHITAYSPLGAKGTIWGTNRVMECQMLKE 247 (332)
Q Consensus 180 ---------~~~l~~~~~~~~~~~~~~q~~~~~-~~~-~~~l~~~~~~~-gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~ 247 (332)
...+...++.....++++-+++.. ... -..++...... ++.+++|-.- |.. ..... ..
T Consensus 182 ~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNa---G~p----~~~~~-~~-- 251 (336)
T PRK07534 182 AGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNA---GIP----KYVDG-HI-- 251 (336)
T ss_pred CCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCC---CCc----ccCCC-cc--
Confidence 233333333222234666666653 221 13334443333 4666666543 221 00000 00
Q ss_pred HHHHcCCC---HHHHHHHHHHhCCCEEEeCC--CCHHHHHHhHcccC
Q 020025 248 IANAKGKS---VAQVSLRWVYQQGVSLVVKS--FNKERMKENLDIFY 289 (332)
Q Consensus 248 la~~~~~s---~~qlal~~~l~~~~~~i~g~--~~~~~l~~nl~a~~ 289 (332)
.+..+ .++.+-+| +..|+.+|=|+ ++|+|+++.-++++
T Consensus 252 ---~~~~~p~~~~~~~~~~-~~~Ga~iIGGCCGTtP~hI~~la~~l~ 294 (336)
T PRK07534 252 ---HYDGTPELMAEYAVLA-RDAGARIIGGCCGTMPEHLAAMRAALD 294 (336)
T ss_pred ---ccCCCHHHHHHHHHHH-HHcCCcEEeeecCCCHHHHHHHHHHHc
Confidence 11122 34556667 44565555443 78888888877765
No 135
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.32 E-value=1.8e+02 Score=21.10 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEec
Q 020025 161 MEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 161 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 225 (332)
++++++.|++- + ...+..++++......++.--+.+. .-...+...|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~-----G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-I-----GTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-E-----cHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45666667643 1 4456666666665554444434433 233678889999999998765
No 136
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.01 E-value=1.8e+02 Score=25.03 Aligned_cols=28 Identities=7% Similarity=0.288 Sum_probs=22.4
Q ss_pred HHHHHHhCCCEEEeCCCCHHHHHHhHcc
Q 020025 260 SLRWVYQQGVSLVVKSFNKERMKENLDI 287 (332)
Q Consensus 260 al~~~l~~~~~~i~g~~~~~~l~~nl~a 287 (332)
.++++..++...+||+.++.++...++.
T Consensus 93 v~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (196)
T PF01081_consen 93 VIEYAREYGIPYIPGVMTPTEIMQALEA 120 (196)
T ss_dssp HHHHHHHHTSEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHcCCcccCCcCCHHHHHHHHHC
Confidence 5667777788888888888888888776
No 137
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=30.75 E-value=49 Score=31.40 Aligned_cols=197 Identities=14% Similarity=0.183 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCC---h---HHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC-----CChhhHHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQS---E---EPLGEAIAQALRLGLIKSRDELFITSKLWFGH-----AHRQLVLPA 112 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygs---e---~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~-----~~~~~i~~~ 112 (332)
.++..+.|+.|-++|++.+=|+=...- + ..+.+.++.. ....+.|+.=+.+.. .+.+.+
T Consensus 13 ~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a-------~~~~~~v~~Disp~~l~~lg~~~~dl--- 82 (357)
T PF05913_consen 13 FEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLA-------KELGMEVIADISPKVLKKLGISYDDL--- 82 (357)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHH-------HHCT-EEEEEE-CCHHHTTT-BTTBT---
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHH-------HHCCCEEEEECCHHHHHHcCCCHHHH---
Confidence 678889999999999998877755531 1 1122222222 233344544443211 111111
Q ss_pred HHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcC-
Q 020025 113 LQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAK- 191 (332)
Q Consensus 113 le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~- 191 (332)
..++.||++ .+=|..- . ..+.+.+|-++|.-=.+=.|+.+.+.++.+.+...
T Consensus 83 --~~~~~lGi~---~lRlD~G------------------f----~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~ 135 (357)
T PF05913_consen 83 --SFFKELGID---GLRLDYG------------------F----SGEEIAKLSKNGIKIELNASTITEEELDELIKYGAN 135 (357)
T ss_dssp --HHHHHHT-S---EEEESSS-----------------------SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--
T ss_pred --HHHHHcCCC---EEEECCC------------------C----CHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 134456633 2222211 1 12333344444666667788888888887776442
Q ss_pred CCCeeeeeecCcccch-------HHHHHHHHHhCceEEEeccCCC--CCCCCCC-ccccchHHHHHHHHHcCCCHHHHHH
Q 020025 192 IPPAVNQVELNPVWQQ-------KKLRDFCEKKGIHITAYSPLGA--KGTIWGT-NRVMECQMLKEIANAKGKSVAQVSL 261 (332)
Q Consensus 192 ~~~~~~q~~~~~~~~~-------~~l~~~~~~~gi~v~a~~~l~~--~G~l~~~-~~~~~~~~l~~la~~~~~s~~qlal 261 (332)
..-...-.+|.|.-.. .+.-.+.++.|+.+.|+-|-.. .|.+... +.+. +|.--+..++.
T Consensus 136 ~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~~GLPTlE----------~hR~~~p~~aa 205 (357)
T PF05913_consen 136 FSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPLYEGLPTLE----------KHRNLPPYAAA 205 (357)
T ss_dssp GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT-S--BSBG----------GGTTS-HHHHH
T ss_pred HHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccCCccCCCCccH----------HHcCCCHHHHH
Confidence 2222333455543221 3445667899999999866542 1221111 1111 22222344566
Q ss_pred HHHHhCC--CEEEeCCC--CHHHHHHhHcc
Q 020025 262 RWVYQQG--VSLVVKSF--NKERMKENLDI 287 (332)
Q Consensus 262 ~~~l~~~--~~~i~g~~--~~~~l~~nl~a 287 (332)
+.+...+ .-+++|=. +.+++++...+
T Consensus 206 ~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 206 LELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 7777777 68888854 55666666555
No 138
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=29.77 E-value=2.7e+02 Score=22.57 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=43.6
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC--CCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020025 89 SRDELFITSKLWFGHAHRQLVLPALQTSLKNLG--LEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN 166 (332)
Q Consensus 89 ~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 166 (332)
+|=.+.|+-|++. ...+..|++.+.++++... ....|++++..+... ....++...|..+.+
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~---------------~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ---------------PDFLKLLQDFLQQIP 109 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC---------------CCHHHHHHHHHHHHH
Confidence 4666788888754 5668889999999888763 346899999876432 235666666665554
Q ss_pred c
Q 020025 167 L 167 (332)
Q Consensus 167 ~ 167 (332)
+
T Consensus 110 ~ 110 (138)
T PRK00730 110 E 110 (138)
T ss_pred H
Confidence 3
No 139
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=29.74 E-value=1.1e+02 Score=27.25 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=42.4
Q ss_pred CCCCccCeeccccc-c--cCCCC--ChHHHHHHHHH----HHHhCCCeEecCCC---cC--ChHHHHH---HHHHHHhcC
Q 020025 23 STGKTIPLVGFGTA-Q--FPFGA--ATEAVKESVVH----AIEVGYRHFDTAAI---YQ--SEEPLGE---AIAQALRLG 85 (332)
Q Consensus 23 ~tg~~vs~lglG~~-~--~~~~~--~~~~~~~~l~~----Ale~Gin~~Dta~~---Yg--se~~vG~---al~~~~~~g 85 (332)
.||+.+|.++|.+- + ||+.+ ..+++.+++.. |.+.|||.|--|.. |. ++...-+ .++....--
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 57999999999985 3 44433 13445555554 55789999987742 22 3433333 333322111
Q ss_pred CCCCCCcEEEEecc
Q 020025 86 LIKSRDELFITSKL 99 (332)
Q Consensus 86 ~~~~R~~~~I~tK~ 99 (332)
.+-.|.++..+
T Consensus 145 ---~~aqV~lAvEi 155 (287)
T COG3623 145 ---ARAQVMLAVEI 155 (287)
T ss_pred ---HhhccEEEeee
Confidence 46667666554
No 140
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=29.72 E-value=1.6e+02 Score=25.35 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=42.3
Q ss_pred HHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecC---cccchHHHHHHHHHhCceEEEeccCCC
Q 020025 161 MEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELN---PVWQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 161 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~---~~~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
..+|++.|. ..+-+.-.+.+.+.++++ +.+.++.-+... -...+..++++|++.||..+.++.++.
T Consensus 37 ~~~l~~~g~-~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 37 AQQLQALGA-EVVEADYDDPESLVAALK--GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHTTT-EEEES-TT-HHHHHHHHT--TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhhcccc-eEeecccCCHHHHHHHHc--CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 445666777 456666667888888887 444333333322 122347899999999999999999876
No 141
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=29.56 E-value=1.7e+02 Score=23.83 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--cCCcceeccCCCcHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN--LGLTKSIGVSNFACKK 182 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvs~~~~~~ 182 (332)
+.+.+.+.+++--+.+|++ ++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.
T Consensus 25 tl~~i~~~l~~~a~~~g~~-v~~~QSN~---------------------Egelid~I~~a~~~~dgiIINpga~THtSvA 82 (140)
T cd00466 25 TLADIEALLRELAAELGVE-VEFFQSNH---------------------EGELIDWIHEARDGADGIIINPGAYTHTSIA 82 (140)
T ss_pred CHHHHHHHHHHHHHHcCCE-EEEEeeCc---------------------HHHHHHHHHHhhccCcEEEEcchHHHHHHHH
Confidence 5688999999999999974 77776432 3578888888755 4666666777888888
Q ss_pred HHHHHHHcCCCCeeeeeecCcccch
Q 020025 183 LERLLATAKIPPAVNQVELNPVWQQ 207 (332)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~ 207 (332)
+..++....+| ++.+.++..+.+
T Consensus 83 i~DAl~~~~~P--~VEVHiSNi~aR 105 (140)
T cd00466 83 LRDALAAVSIP--VIEVHISNIHAR 105 (140)
T ss_pred HHHHHHcCCCC--EEEEecCCcccc
Confidence 88888877665 777777665443
No 142
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=29.53 E-value=22 Score=18.61 Aligned_cols=13 Identities=54% Similarity=1.173 Sum_probs=9.9
Q ss_pred CCCcccccccCCC
Q 020025 319 GPYKSLEDLWDGE 331 (332)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (332)
-||..++.+|.|.
T Consensus 7 m~~S~lekLW~G~ 19 (20)
T PF07725_consen 7 MPYSKLEKLWEGV 19 (20)
T ss_pred CCCCChHHhcCcc
Confidence 3677788999874
No 143
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=29.40 E-value=3.6e+02 Score=26.71 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----cCCcceecc--CCC
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN----LGLTKSIGV--SNF 178 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~G~ir~iGv--s~~ 178 (332)
+.+.|.+.++. +...|...+-++.=..|. ...++.+.+.++.+++ .|.++.+++ ...
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~----------------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~l 178 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPP----------------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPT 178 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCC----------------CCCHHHHHHHHHHHHHhccccCcceeeEEEeecC
Confidence 56778888875 467887776554222221 1236667777777775 467776665 346
Q ss_pred cHHHHHHHHHHcCCCCeeeeeecCc-----c---------cchHHHHHHHHHhCceEEEeccCC
Q 020025 179 ACKKLERLLATAKIPPAVNQVELNP-----V---------WQQKKLRDFCEKKGIHITAYSPLG 228 (332)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~q~~~~~-----~---------~~~~~l~~~~~~~gi~v~a~~~l~ 228 (332)
+.+++.++.+.+--...++|=-||. + ..+-+.++.+++.|+.-+..+.|-
T Consensus 179 t~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~ 242 (469)
T PRK09613 179 TVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLF 242 (469)
T ss_pred CHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEE
Confidence 6788888877553333344433321 1 111356888999998755544443
No 144
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=29.09 E-value=5.5e+02 Score=25.02 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=63.1
Q ss_pred CCcCChHHHHHHHHHHHhcCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCC
Q 020025 66 AIYQSEEPLGEAIAQALRLGLIKSR-DELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPF 144 (332)
Q Consensus 66 ~~Ygse~~vG~al~~~~~~g~~~~R-~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~ 144 (332)
-.||.+.-+-++|++..+.. ++ +-++|.|-+...-. -+.+..-+++.-++.+ +.++.+|.|.......
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~~li-GdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~---- 165 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPTGLI-GDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQ---- 165 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC---CccceEEEECCChHHHh-ccCHHHHHHHHHHhcC---CCEEEEecCCccCCcc----
Confidence 34677888888888775543 44 66777776633111 1334444444334444 6899999886543100
Q ss_pred CCCCCCCCCHHHHHHH-HHHHH--------HcCCcceeccCCC--cHHHHHHHHHHcCCCC
Q 020025 145 SKEDIEPLDYEGVWEA-MEECQ--------NLGLTKSIGVSNF--ACKKLERLLATAKIPP 194 (332)
Q Consensus 145 ~~~~~~~~~~~~~~~~-L~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~ 194 (332)
......+.++ ++.+. ++++|.-||-.++ +.+++.++++..++++
T Consensus 166 ------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 166 ------SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred ------chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeE
Confidence 0112233333 23343 3577888885553 3457788888777654
No 145
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.01 E-value=3.7e+02 Score=23.27 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC-CcHHHHHHHHHH
Q 020025 111 PALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN-FACKKLERLLAT 189 (332)
Q Consensus 111 ~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~ 189 (332)
..+-+.|-+-|+..+.+=+ +.| ..++.+++++++..=-.||..+ .+.++++++++.
T Consensus 23 ~~~~~al~~~Gi~~iEit~-~t~----------------------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a 79 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTL-RTP----------------------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA 79 (204)
T ss_pred HHHHHHHHHcCCCEEEEeC-CCc----------------------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc
Q ss_pred cCCCCeeeeeecCcccchHHHHHHHHHhCceEE
Q 020025 190 AKIPPAVNQVELNPVWQQKKLRDFCEKKGIHIT 222 (332)
Q Consensus 190 ~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~ 222 (332)
+ .++-.++.. ..+++++|+++||.++
T Consensus 80 G------A~FivsP~~-~~~v~~~~~~~~i~~i 105 (204)
T TIGR01182 80 G------AQFIVSPGL-TPELAKHAQDHGIPII 105 (204)
T ss_pred C------CCEEECCCC-CHHHHHHHHHcCCcEE
No 146
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=28.88 E-value=2.5e+02 Score=25.78 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC------ChHHHHHHHHHHH----------hcCCCCCCCcEEEEeccCCC-----
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ------SEEPLGEAIAQAL----------RLGLIKSRDELFITSKLWFG----- 102 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg------se~~vG~al~~~~----------~~g~~~~R~~~~I~tK~~~~----- 102 (332)
++..++.-...+++|-+.++|+ .|. +|+.-..-++.+. +.-+ -.+...|+.-+++.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~-TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~--g~~~~~iagsiGP~ga~~a 118 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTA-TYQATPEGFAERVSEDEAKQLIRRSVELARAARDAY--GEENQNIAGSLGPYGAALA 118 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeeh-hhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--cccccccceeccchhhhcC
Confidence 6677777777889999999887 565 2221111111110 0001 23334455555432
Q ss_pred -------CCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceecc
Q 020025 103 -------HAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGV 175 (332)
Q Consensus 103 -------~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 175 (332)
..+.+.+.+-.+.-++.|.-.-+|++....... +.|.-..++-+++-+|=-+|++
T Consensus 119 ~Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~------------------i~Ea~Aiv~l~~~~s~p~wISf 180 (300)
T COG2040 119 DEYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPN------------------ITEAEAIVQLVQEFSKPAWISF 180 (300)
T ss_pred hhhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCC------------------hHHHHHHHHHHHHhCCceEEEE
Confidence 224555666667777777767799998876522 3333333333333388889998
Q ss_pred CCCcH------HHHHHHHHHcC-C-CCeeeeeecCcccchHHHHHHH--HHhCceEEEecc
Q 020025 176 SNFAC------KKLERLLATAK-I-PPAVNQVELNPVWQQKKLRDFC--EKKGIHITAYSP 226 (332)
Q Consensus 176 s~~~~------~~l~~~~~~~~-~-~~~~~q~~~~~~~~~~~l~~~~--~~~gi~v~a~~~ 226 (332)
+-.+. ..+.++..... . .+...-++...++.-..+++.. ...+++++.|-.
T Consensus 181 T~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 181 TLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred EeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC
Confidence 88742 22334433322 2 2334444544444446677776 444788888866
No 147
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=28.87 E-value=2.8e+02 Score=21.62 Aligned_cols=65 Identities=8% Similarity=-0.066 Sum_probs=43.3
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC--CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020025 89 SRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL--EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN 166 (332)
Q Consensus 89 ~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 166 (332)
+|=.+.|+-|++.....+..+++.+.++++.... .-.|++++..+... ..+..++.+.|..|.+
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~--------------~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFD--------------RATAKQAVAELAQLMA 109 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcc--------------cCCHHHHHHHHHHHHH
Confidence 5666777777665566778888888888875543 24699999887533 2345666666666554
Q ss_pred c
Q 020025 167 L 167 (332)
Q Consensus 167 ~ 167 (332)
.
T Consensus 110 k 110 (120)
T PRK04390 110 K 110 (120)
T ss_pred H
Confidence 3
No 148
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.78 E-value=5e+02 Score=24.42 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcCC----------------hHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQS----------------EEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQ 107 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Ygs----------------e~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~ 107 (332)
.+.-.++.++|=+.|+-+|-|--.+.+ -+..-.-|=++++. .-+.+.++|-+. +-+
T Consensus 89 ~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~----~~kPiIlSTGma----~~~ 160 (347)
T COG2089 89 LEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK----KGKPIILSTGMA----TIE 160 (347)
T ss_pred HHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh----cCCCEEEEcccc----cHH
Confidence 677788999999999998865444331 11111111111111 233577777653 236
Q ss_pred hHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHH
Q 020025 108 LVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLL 187 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 187 (332)
.+.++++...+. |. .|+.+||+...+. ...+ +--+.+|..|.+.= ---||+|.|+..-+.-+.
T Consensus 161 ei~~av~~~r~~-g~--~~i~LLhC~s~YP------ap~e-------d~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 161 EIEEAVAILREN-GN--PDIALLHCTSAYP------APFE-------DVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred HHHHHHHHHHhc-CC--CCeEEEEecCCCC------CCHH-------HhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 677777766554 32 3999999875432 1111 12244444444443 336999999987554443
Q ss_pred H
Q 020025 188 A 188 (332)
Q Consensus 188 ~ 188 (332)
.
T Consensus 224 A 224 (347)
T COG2089 224 A 224 (347)
T ss_pred H
Confidence 3
No 149
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=28.74 E-value=4.8e+02 Score=24.20 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCcceeccCC---------CcHHHHHHHHHHcCCCCeeeeeecCccc---c-hHHHHHHHHHhCce
Q 020025 154 YEGVWEAMEECQNLGLTKSIGVSN---------FACKKLERLLATAKIPPAVNQVELNPVW---Q-QKKLRDFCEKKGIH 220 (332)
Q Consensus 154 ~~~~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~-~~~l~~~~~~~gi~ 220 (332)
...+.+-++.+++-|.+..|.+.+ .+.+.++.+.+.+ .. .++-++.|... . -.+.++.+++.||.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g-~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSG-KT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcC-Cc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 356677777888888776444433 3344455444433 32 33444443221 1 14567888999999
Q ss_pred EEEeccCCCCCC
Q 020025 221 ITAYSPLGAKGT 232 (332)
Q Consensus 221 v~a~~~l~~~G~ 232 (332)
+...+++.. |.
T Consensus 230 v~~q~vLl~-gv 240 (321)
T TIGR03822 230 MVSQSVLLR-GV 240 (321)
T ss_pred EEEEeeEeC-CC
Confidence 999888876 54
No 150
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=28.72 E-value=4.8e+02 Score=24.28 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCC---CCChhhHHHHHHHHHHhhC
Q 020025 45 EAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFG---HAHRQLVLPALQTSLKNLG 121 (332)
Q Consensus 45 ~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~---~~~~~~i~~~le~sL~~Lg 121 (332)
...+++|+.+-+.|| .+|.|.. +++.+=+++. --+..+|+|-...+ +..+.---++++...++=|
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~--s~kt~~Dvl~---------~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gG 216 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL--SDKTFWDVLD---------LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGG 216 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc--CCccHHHHHh---------ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCC
Confidence 667899999999999 7888765 5666666765 23445566555321 2223334556666666666
Q ss_pred CCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC
Q 020025 122 LEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN 177 (332)
Q Consensus 122 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 177 (332)
+ |.+.++-..... .+ .....+++..+.++.+++.+=+++||+.+
T Consensus 217 v--Igv~~~~~fl~~-~~---------~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 217 V--IGVNFIPAFLRP-GG---------AARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred E--EEEEeehhhccC-CC---------CCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 5 555444332221 00 00245899999999999999999999987
No 151
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=28.61 E-value=1e+02 Score=27.87 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCcceeccCCCcH-----HHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEe
Q 020025 155 EGVWEAMEECQNLGLTKSIGVSNFAC-----KKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 155 ~~~~~~L~~l~~~G~ir~iGvs~~~~-----~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 224 (332)
...-..|++|++.| +-||.||.. ..+++.++..+.. +.++-+++..|++.|+-.++|
T Consensus 95 ~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 95 RDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp --HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 45677788888887 578999872 4455555544432 233345566666666555554
No 152
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.40 E-value=5.1e+02 Score=24.42 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHHhc-CCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC-CCcccEEeeccCCCCCCCCCCCCCCC
Q 020025 70 SEEPLGEAIAQALRL-GLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLG-LEHIDLYLIHFPVSLKPGTGFPFSKE 147 (332)
Q Consensus 70 se~~vG~al~~~~~~-g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~ 147 (332)
+...+-++++..-.. |+ ....+.|+|-. -...+++-.+.-+++|| .+....+-||.++......-.|.
T Consensus 163 n~~~v~~~i~~l~~~~~i--~~r~itvST~G-----~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~--- 232 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGI--GQRRITVSTVG-----VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPS--- 232 (345)
T ss_pred CHHHHHHHHHHHhcccCC--ccCceEEECCC-----chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCC---
Confidence 455666777654221 33 33456677632 12334433333344443 24457788999866432110000
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCC---cceeccCCC--cHHHHHHHHHHcC-CCCeeeeeecCcccch----------HHH
Q 020025 148 DIEPLDYEGVWEAMEE-CQNLGL---TKSIGVSNF--ACKKLERLLATAK-IPPAVNQVELNPVWQQ----------KKL 210 (332)
Q Consensus 148 ~~~~~~~~~~~~~L~~-l~~~G~---ir~iGvs~~--~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l 210 (332)
.....++++++++.+ +.+.|+ ++++=+.++ +.+.++++.+... ++..++-++||++... ..+
T Consensus 233 -~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f 311 (345)
T PRK14457 233 -AKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAF 311 (345)
T ss_pred -ccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHH
Confidence 012347788888766 455563 466655443 4566666665433 4556788888886321 245
Q ss_pred HHHHHHhCceEEEeccCCC
Q 020025 211 RDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 211 ~~~~~~~gi~v~a~~~l~~ 229 (332)
.+..+++|+.+......|.
T Consensus 312 ~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 312 QRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHCCCeEEEeCCCCC
Confidence 6667788999888777754
No 153
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=28.24 E-value=2.8e+02 Score=21.71 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=46.1
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC---CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 020025 89 SRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL---EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQ 165 (332)
Q Consensus 89 ~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 165 (332)
+|=.+.|+-|++.....+..+++.+.+.++.+.. ...|++++-.+... ..+..++.+.|..|.
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~--------------~~~~~~l~~~l~~ll 112 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAA--------------ECNYEQFLQELEQLL 112 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcc--------------cCCHHHHHHHHHHHH
Confidence 4555666667665566788899999999887643 35799999877543 245678888887766
Q ss_pred Hc
Q 020025 166 NL 167 (332)
Q Consensus 166 ~~ 167 (332)
++
T Consensus 113 ~k 114 (122)
T PRK03031 113 IQ 114 (122)
T ss_pred HH
Confidence 55
No 154
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=28.12 E-value=32 Score=30.53 Aligned_cols=59 Identities=25% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCCCCccCeecccccccCC-------------CCChHHHHHHHHHHHHhCCCeEecCCCcCChHHHHHHHHHHH
Q 020025 22 GSTGKTIPLVGFGTAQFPF-------------GAATEAVKESVVHAIEVGYRHFDTAAIYQSEEPLGEAIAQAL 82 (332)
Q Consensus 22 g~tg~~vs~lglG~~~~~~-------------~~~~~~~~~~l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~ 82 (332)
|+..-.|.++++.+...+. .. -+-.......|.+.|++.||.+ +|.+|...-+.|.+++
T Consensus 164 g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~IT-Gd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~L 235 (241)
T PF01784_consen 164 GDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYIT-GDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEWL 235 (241)
T ss_dssp SCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEE-SS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHHH
T ss_pred CCCCCcccEEEEEcccCccHHHHHHhCCCeEEEE-ccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHHH
Confidence 5667778888776543221 00 1223345567788888888876 6777666555555443
No 155
>PRK08223 hypothetical protein; Validated
Probab=28.06 E-value=3.8e+02 Score=24.65 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=75.1
Q ss_pred EecCCCcC-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCC
Q 020025 62 FDTAAIYQ-SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGT 140 (332)
Q Consensus 62 ~Dta~~Yg-se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~ 140 (332)
||....|. +...+|..-.+.+ ....+.|+. ...+-..+-..|.+.|+..+-++=-...+..+-..
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q~kL------~~s~VlIvG--------~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnR 69 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQQRL------RNSRVAIAG--------LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNR 69 (287)
T ss_pred ccHHHHHhhhhhhcCHHHHHHH------hcCCEEEEC--------CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcccc
Confidence 33344444 4445665544332 344555542 13466667778889998765443211111111000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCce
Q 020025 141 GFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIH 220 (332)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~ 220 (332)
++-+..+++-..-.+.+.+.|.++--.-+|..+-. ..+.+.+.++++ +.++++......-+....-+-++|+++|+.
T Consensus 70 Q~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~-~l~~~n~~~ll~--~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP 146 (287)
T PRK08223 70 QAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE-GIGKENADAFLD--GVDVYVDGLDFFEFDARRLVFAACQQRGIP 146 (287)
T ss_pred ccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec-ccCccCHHHHHh--CCCEEEECCCCCcHHHHHHHHHHHHHcCCC
Confidence 11111122222223344566666666666655421 122334455554 344333322211012235678899999999
Q ss_pred EEEeccCCCCCC
Q 020025 221 ITAYSPLGAKGT 232 (332)
Q Consensus 221 v~a~~~l~~~G~ 232 (332)
++.-++++..|.
T Consensus 147 ~V~~~~~g~~gq 158 (287)
T PRK08223 147 ALTAAPLGMGTA 158 (287)
T ss_pred EEEEeccCCeEE
Confidence 999888877444
No 156
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.92 E-value=1.2e+02 Score=23.56 Aligned_cols=38 Identities=18% Similarity=-0.077 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC-ChHHHHHHHHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ-SEEPLGEAIAQA 81 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg-se~~vG~al~~~ 81 (332)
.+.-.+++...++.|.+.-+.|.-|| ++..+..|.+.+
T Consensus 15 ~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 15 TQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56667888999999999999999999 999999999987
No 157
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=27.77 E-value=4.6e+02 Score=23.69 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=59.8
Q ss_pred eecccccccCC-----CCChHHHHHHHHHHHHhCCCeEecCC-CcC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCC
Q 020025 30 LVGFGTAQFPF-----GAATEAVKESVVHAIEVGYRHFDTAA-IYQ--SEEPLGEAIAQALRLGLIKSRDELFITSKLWF 101 (332)
Q Consensus 30 ~lglG~~~~~~-----~~~~~~~~~~l~~Ale~Gin~~Dta~-~Yg--se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~ 101 (332)
.||.++|.... .+ ++...+-..+.+....|.++.-. .|. +++.+-++.++ ..+++..+.|+..
T Consensus 4 ~IG~sGW~~~~w~~~~yp-~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~--------~p~~FrFsvK~~~ 74 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYP-EGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE--------TPDDFRFSVKAPR 74 (263)
T ss_pred EEeecCCCcccccccccC-cccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh--------CCCCeEEEEEecc
Confidence 45666665432 12 22223333455566677776433 455 78888888774 6899999999853
Q ss_pred C----CCCh---hhHHHHHHHHHHhhCCCcccEEeeccCCCC
Q 020025 102 G----HAHR---QLVLPALQTSLKNLGLEHIDLYLIHFPVSL 136 (332)
Q Consensus 102 ~----~~~~---~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~ 136 (332)
. .... ..+.+.+.+-++.|| +++..+++.-|-..
T Consensus 75 ~iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 75 AITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred cccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1 1111 345555556666788 69999999988654
No 158
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=27.61 E-value=3.6e+02 Score=22.40 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccc-------hHHHHHHHHHhCceEEEecc
Q 020025 154 YEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ-------QKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 154 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-------~~~l~~~~~~~gi~v~a~~~ 226 (332)
-+++++.--+=-++.-|++|=|.+-+.....++++...-+..++-+.++.-+. ++++-+..+++|..++.-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 45666665555556778888877766666666665544332233333333222 26788899999999888654
Q ss_pred CCCCCCCCCCccccchHHHHHHHHHc-CCCHHHHH---HHHHHhCC
Q 020025 227 LGAKGTIWGTNRVMECQMLKEIANAK-GKSVAQVS---LRWVYQQG 268 (332)
Q Consensus 227 l~~~G~l~~~~~~~~~~~l~~la~~~-~~s~~qla---l~~~l~~~ 268 (332)
.-+ |. -+.+.+++ |.+|.++. || ..++|
T Consensus 92 alS-g~------------eRsis~kfGG~~p~eiiAetLR-~fg~G 123 (186)
T COG1751 92 ALS-GV------------ERSISRKFGGYSPLEIIAETLR-MFGQG 123 (186)
T ss_pred hhh-cc------------hhhhhhhcCCcchHHHHHHHHH-HhcCC
Confidence 444 32 13445555 35666653 45 45566
No 159
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=27.56 E-value=2.7e+02 Score=21.80 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEe
Q 020025 154 YEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 154 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 224 (332)
.+.+...+....+.|+|. ...++...+++......++.--..+|-.--..+...|.+++|+++-.
T Consensus 12 ~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V 76 (116)
T COG1358 12 EQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYV 76 (116)
T ss_pred HHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 456778888888888765 36788888888877666666555554444467889999999998863
No 160
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.44 E-value=5.3e+02 Score=24.35 Aligned_cols=92 Identities=12% Similarity=0.206 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CcceeccCCCcHHHHHHHH
Q 020025 109 VLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLG-LTKSIGVSNFACKKLERLL 187 (332)
Q Consensus 109 i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~ 187 (332)
-+..+-+.|.++|+++|++- +|.. -+.-++.++.+.+.+ ..+..+++....+.++.+.
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG---~p~~------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~ 82 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVG---IPAM------------------GEEERAVIRAIVALGLPARLMAWCRARDADIEAAA 82 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCC------------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHH
Confidence 45566677999999998885 3421 123366677776664 3777777777788887776
Q ss_pred HHcCCCCeeeeeecCcccc--------h------HHHHHHHHHhCceEE
Q 020025 188 ATAKIPPAVNQVELNPVWQ--------Q------KKLRDFCEKKGIHIT 222 (332)
Q Consensus 188 ~~~~~~~~~~q~~~~~~~~--------~------~~l~~~~~~~gi~v~ 222 (332)
+. +.+.+.+-+..|.... + .+.+++++++|..+.
T Consensus 83 ~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 83 RC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred cC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 53 3332222222222111 1 356888999997754
No 161
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=27.43 E-value=2.2e+02 Score=23.80 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=37.6
Q ss_pred HHHHHHHH-HhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHH
Q 020025 48 KESVVHAI-EVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSL 117 (332)
Q Consensus 48 ~~~l~~Al-e~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL 117 (332)
...|...+ +.|++.....-.-..+..+-++++..+ .+.+++|+|=. ......+...+++.+.+
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~------~~~dlVIttGG-~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS------ERADLVITTGG-LGPTHDDLTREAVAKAF 84 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH------hCCCEEEECCC-CCCCCCChHHHHHHHHh
Confidence 33444444 779987654433336667788887651 57789998843 22222356666666654
No 162
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=27.36 E-value=3.1e+02 Score=22.22 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHH-HhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 020025 50 SVVHAI-EVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKL 99 (332)
Q Consensus 50 ~l~~Al-e~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~ 99 (332)
.+...+ +.|++..+..-.......+-+++++.+++ .+.+++|+|=.
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----~~~DlVittGG 70 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADE----DGVDLILTTGG 70 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCC
Confidence 444444 77998776655555666777888765321 37889998843
No 163
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=27.21 E-value=1.6e+02 Score=25.68 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=35.7
Q ss_pred HHHHHHHHhC-ceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHHHHHhCCCEEEeCC
Q 020025 209 KLRDFCEKKG-IHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLRWVYQQGVSLVVKS 275 (332)
Q Consensus 209 ~l~~~~~~~g-i~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~~~i~g~ 275 (332)
++.+.|.+.| |+|..+.-||..|.+ + ..-+..++++|+.| |++|++..-..+|+|.
T Consensus 139 ~i~e~~~~~g~iaVHCkaGlGRTG~l------i----Ac~lmy~~g~ta~e-aI~~lR~~RpG~V~gp 195 (225)
T KOG1720|consen 139 KIVENAEKGGKIAVHCKAGLGRTGTL------I----ACYLMYEYGMTAGE-AIAWLRICRPGAVIGP 195 (225)
T ss_pred HHHHHHHhcCeEEEEeccCCCchhHH------H----HHHHHHHhCCCHHH-HHHHHHhcCCccccCH
Confidence 5677777754 677777666653322 1 22344568999999 8999988654444444
No 164
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=27.17 E-value=5e+02 Score=23.96 Aligned_cols=163 Identities=15% Similarity=0.250 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHhC-CC--eEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEecc---------CCCCCChhhHHH
Q 020025 44 TEAVKESVVHAIEVG-YR--HFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKL---------WFGHAHRQLVLP 111 (332)
Q Consensus 44 ~~~~~~~l~~Ale~G-in--~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~---------~~~~~~~~~i~~ 111 (332)
.+...++++...+.+ +. .+.|-+.+-.++.+.. +++. |. +-.+.|..-. -.+..+.+.+.+
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~-l~~a---G~---~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ 159 (313)
T TIGR01210 87 KETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEE-LRKI---GV---NVEVAVGLETANDRIREKSINKGSTFEDFIR 159 (313)
T ss_pred HHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHH-HHHc---CC---CEEEEEecCcCCHHHHHHhhCCCCCHHHHHH
Confidence 566677777776766 32 3445555545655554 5543 42 2235554332 123456677777
Q ss_pred HHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHH---HHHHHHH
Q 020025 112 ALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACK---KLERLLA 188 (332)
Q Consensus 112 ~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~---~l~~~~~ 188 (332)
+++.. +..|.. +-.+++-.+....+ ....+++.+.++.+.+-+ .++.+...++. .+.++.+
T Consensus 160 ai~~~-~~~Gi~-v~~~~i~G~P~~se------------~ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~~~~ 223 (313)
T TIGR01210 160 AAELA-RKYGAG-VKAYLLFKPPFLSE------------KEAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEFLWN 223 (313)
T ss_pred HHHHH-HHcCCc-EEEEEEecCCCCCh------------hhhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHHHHH
Confidence 77764 557886 66666655421111 112556666777777665 67777765532 4566665
Q ss_pred HcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCcc
Q 020025 189 TAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNR 238 (332)
Q Consensus 189 ~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~ 238 (332)
.+.+.|. -++...+++..+++.++.++. -|.+. |...|+..
T Consensus 224 ~G~~~pp-------~lws~~e~l~e~~~~~~~~~~-d~~g~-~~~rg~~n 264 (313)
T TIGR01210 224 RGLYRPP-------WLWSVAEVLKEAKKIGAEVLS-DPVGA-GSDRGAHN 264 (313)
T ss_pred cCCCCCC-------CHHHHHHHHHHHHhhCCeEEe-cCCCC-CCcCCCcC
Confidence 5544321 123445778888877875554 57776 76555544
No 165
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=27.14 E-value=2.6e+02 Score=26.59 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch--HHHHHHHHHhCceEEEeccCCCCCCCC
Q 020025 157 VWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ--KKLRDFCEKKGIHITAYSPLGAKGTIW 234 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~~l~~~G~l~ 234 (332)
-..++.+|.+.|.+.||-.-.-.--.+..+...-.-+|. -.|.....+ +.+++.|+++||.++.-+ + |.
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na--G--g~-- 81 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA--G--GL-- 81 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC--C--CC--
Confidence 466777888899999996554332222222111111111 113222222 578999999999999742 1 21
Q ss_pred CCccccchHHHHHHHHHcCCC
Q 020025 235 GTNRVMECQMLKEIANAKGKS 255 (332)
Q Consensus 235 ~~~~~~~~~~l~~la~~~~~s 255 (332)
.+.-....+++++++.|.+
T Consensus 82 --np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 --NPAGCADIVREIARELGLS 100 (362)
T ss_pred --CHHHHHHHHHHHHHhcCCC
Confidence 1111345667777776553
No 166
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.14 E-value=5e+02 Score=23.91 Aligned_cols=132 Identities=13% Similarity=0.136 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHhCCCeEecCC---------Cc-CC-----hHHHHHHHHHHHhcCCCCCCCcEEEEeccCC-CCCChh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAA---------IY-QS-----EEPLGEAIAQALRLGLIKSRDELFITSKLWF-GHAHRQ 107 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~---------~Y-gs-----e~~vG~al~~~~~~g~~~~R~~~~I~tK~~~-~~~~~~ 107 (332)
.++..+..+.+.++|+..||..- .| |+ .+.+.+.++... .+-++-|+.|+.. .+.+..
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr------~~~~~pv~vKir~g~~~~~~ 147 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVV------DAVDIPVTVKIRIGWDDAHI 147 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHH------hhcCCCEEEEEEcccCCCcc
Confidence 67888888888899999888531 22 32 345555555431 1112557778631 111111
Q ss_pred hHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC-CcHHHHHHH
Q 020025 108 LVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN-FACKKLERL 186 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~ 186 (332)
.+ ..+-+.|+..|+ |.+.+|....... ......|+.+.++++.=.+--||... .+++.+.++
T Consensus 148 ~~-~~~a~~l~~~G~---d~i~vh~r~~~~~-------------~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~ 210 (319)
T TIGR00737 148 NA-VEAARIAEDAGA---QAVTLHGRTRAQG-------------YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAM 210 (319)
T ss_pred hH-HHHHHHHHHhCC---CEEEEEccccccc-------------CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHH
Confidence 12 235555677785 5556675322100 00112477777777776677777666 457778888
Q ss_pred HHHcCCCCeeeeee
Q 020025 187 LATAKIPPAVNQVE 200 (332)
Q Consensus 187 ~~~~~~~~~~~q~~ 200 (332)
++..+.+ .+++-
T Consensus 211 l~~~gad--~Vmig 222 (319)
T TIGR00737 211 LETTGCD--GVMIG 222 (319)
T ss_pred HHhhCCC--EEEEC
Confidence 8655544 55544
No 167
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.97 E-value=1.3e+02 Score=29.36 Aligned_cols=106 Identities=20% Similarity=0.083 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCC-Ch--------hhH--HHHHHHHHHhhCCCcccEEeeccCCCCCC
Q 020025 70 SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHA-HR--------QLV--LPALQTSLKNLGLEHIDLYLIHFPVSLKP 138 (332)
Q Consensus 70 se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~-~~--------~~i--~~~le~sL~~Lg~d~iDl~~lH~p~~~~~ 138 (332)
..+.+-++-++.+- |- -+.++++++-++.-.. .+ ..| +-.-.+.-+||.+.|+|..-
T Consensus 149 TyeT~~~~~r~h~~-gd--L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~a--------- 216 (561)
T COG2987 149 TYETFAEAGRQHFG-GD--LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEIA--------- 216 (561)
T ss_pred hHHHHHHHHHHhcC-CC--ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhhc---------
Confidence 44445555454432 32 4777888888753211 00 001 11122344688889998652
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcC-CCCeeeeee
Q 020025 139 GTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAK-IPPAVNQVE 200 (332)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~ 200 (332)
.+++++++-.++.+++|+-..||+-..-++.+.++++..- .+.+.-|..
T Consensus 217 -------------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTs 266 (561)
T COG2987 217 -------------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTS 266 (561)
T ss_pred -------------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccc
Confidence 2378999999999999999999999988999999988543 233334654
No 168
>PLN02681 proline dehydrogenase
Probab=26.64 E-value=6.3e+02 Score=24.89 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhCCC-eEecCCCcCC---hHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHh--
Q 020025 46 AVKESVVHAIEVGYR-HFDTAAIYQS---EEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKN-- 119 (332)
Q Consensus 46 ~~~~~l~~Ale~Gin-~~Dta~~Ygs---e~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~-- 119 (332)
...+++++|.+.|+. +||.-..|=. ..+.-+..+++ ..-..+.-|+++-....++ +++.+...++.+.+.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~y---N~~~~~~~V~~T~QaYLk~-t~~~l~~~l~~a~~~g~ 296 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREF---NKGKDRPIVYGTYQAYLKD-ARERLRLDLERSEREGV 296 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHh---ccccCCCcEEEEEeCcccc-CHHHHHHHHHHHHhcCC
Confidence 466888999999998 7887665431 22333333332 1000134577777766544 466777777766542
Q ss_pred -hCC-----CcccE-----EeeccCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHH---cCCcceeccCCCcHHHHH
Q 020025 120 -LGL-----EHIDL-----YLIHFPVSLKPGTGFPFSKEDIEPLDYEGVW-EAMEECQN---LGLTKSIGVSNFACKKLE 184 (332)
Q Consensus 120 -Lg~-----d~iDl-----~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~---~G~ir~iGvs~~~~~~l~ 184 (332)
+|+ -|+|- -.+.||.+.-+ . ..+.+..+ +.++.+.+ .|. -++.|.+|+...+.
T Consensus 297 ~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~-------~----k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~ 364 (455)
T PLN02681 297 PLGAKLVRGAYLSLERRLAASLGVPSPVHD-------T----IQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGE 364 (455)
T ss_pred CcceEEEecCCcchhhhhHHhcCCCCCCcC-------C----HHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHH
Confidence 121 12111 11112211100 0 01112222 23333333 344 48889999988777
Q ss_pred HHHHHc---CCCCeeeeeecCccc-chHHHHHHHHHhCceEEEeccCCC
Q 020025 185 RLLATA---KIPPAVNQVELNPVW-QQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 185 ~~~~~~---~~~~~~~q~~~~~~~-~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
.+.+.. ++++.-.++.|..+. ...++.....+.|..|.-|-|+|.
T Consensus 365 ~a~~~~~~~gi~~~~~~veF~qL~GM~d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 365 LAAAKMNELGLHKGDPRVQFAQLLGMSDNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHHHHHHcCCCCCCCCEEEeccCCCCHHHHHHHHhcCCCEEEEeeccC
Confidence 665532 333221122222221 124565566677988989999975
No 169
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.63 E-value=3e+02 Score=24.60 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCcC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC------CChhhHHHHHHHH
Q 020025 45 EAVKESVVHAIEVGYRHFDTAAIYQ--SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGH------AHRQLVLPALQTS 116 (332)
Q Consensus 45 ~~~~~~l~~Ale~Gin~~Dta~~Yg--se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~------~~~~~i~~~le~s 116 (332)
....+.++.+-+.|+++++.++.+- ++..--+.++.. ....+.+.+-++.++ .+++.+.+.+++-
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 4566788888899999999998876 666677777766 566688888887653 2356677777777
Q ss_pred HHhhCCCcccEEeeccC
Q 020025 117 LKNLGLEHIDLYLIHFP 133 (332)
Q Consensus 117 L~~Lg~d~iDl~~lH~p 133 (332)
|+. | .|.+.+..-
T Consensus 157 LeA-G---A~~ViiEar 169 (244)
T PF02679_consen 157 LEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHH-T---ECEEEE--T
T ss_pred HHC-C---CCEEEEeee
Confidence 774 6 567777654
No 170
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=26.54 E-value=2.3e+02 Score=24.53 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=41.6
Q ss_pred HHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccC-CCcHHHHHHHHHHcCCCC
Q 020025 116 SLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVS-NFACKKLERLLATAKIPP 194 (332)
Q Consensus 116 sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~ 194 (332)
....+|.|++=+++...--+ ..+. +....+.+.. .+.++.+||. |.+++.+.++++... +
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR---------------~V~~-~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~--~ 76 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKR---------------HQTI-TQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTS--I 76 (207)
T ss_pred HHHHcCCCEEEEecCCCCcc---------------cCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCC--C
Confidence 34569999999875332111 1223 3344444433 3567889986 777888888887554 4
Q ss_pred eeeeeec
Q 020025 195 AVNQVEL 201 (332)
Q Consensus 195 ~~~q~~~ 201 (332)
+++|++-
T Consensus 77 d~vQLHG 83 (207)
T PRK13958 77 NTIQLHG 83 (207)
T ss_pred CEEEECC
Confidence 5888764
No 171
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=26.40 E-value=6.2e+02 Score=24.72 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEecCCCcC------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 020025 48 KESVVHAIEVGYRHFDTAAIYQ------------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQT 115 (332)
Q Consensus 48 ~~~l~~Ale~Gin~~Dta~~Yg------------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~ 115 (332)
.+.++...++|+|.|--+-.=. +-+.+-++++...+.| ...+.+--=++....+.+.+++.++.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g----~~~v~~DlI~GlPgqT~e~~~~~l~~ 238 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD----RAAVVCDLIFGLPGQTPEIWQQDLAI 238 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC----CCcEEEEEEeeCCCCCHHHHHHHHHH
Q ss_pred HHHhhCCCcccEEeec-----------------cC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC
Q 020025 116 SLKNLGLEHIDLYLIH-----------------FP-VSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN 177 (332)
Q Consensus 116 sL~~Lg~d~iDl~~lH-----------------~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 177 (332)
.++ |+.+++++|.|. .| +.... .+-.-.+.+.|.+.|- +.+++|+
T Consensus 239 ~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~---------------~~my~~~~~~L~~~Gy-~~yeis~ 301 (449)
T PRK09058 239 VRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAER---------------ADMYAYGVEFLAKAGW-RQLSNSH 301 (449)
T ss_pred HHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHH---------------HHHHHHHHHHHHHCCC-eEEeeee
Q ss_pred Cc
Q 020025 178 FA 179 (332)
Q Consensus 178 ~~ 179 (332)
|.
T Consensus 302 fa 303 (449)
T PRK09058 302 WA 303 (449)
T ss_pred ee
No 172
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=26.35 E-value=4e+02 Score=22.57 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=25.8
Q ss_pred ccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHH
Q 020025 125 IDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKL 183 (332)
Q Consensus 125 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 183 (332)
+|.++||..+. .+..+.+.+......++.+|++++.....
T Consensus 74 ~d~Vqlhg~e~-------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDES-------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCCC-------------------HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 78999997521 13344444444456889999998765443
No 173
>PLN02775 Probable dihydrodipicolinate reductase
Probab=26.20 E-value=4.3e+02 Score=24.30 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHc
Q 020025 111 PALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATA 190 (332)
Q Consensus 111 ~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 190 (332)
..+++.|..+.-+|.|++++..- .++.+.+.++.+.+.|+---+|.+.|+.+++.++.+..
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT-------------------~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~ 126 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYT-------------------LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEES 126 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECC-------------------ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcC
Confidence 34556665665568997777642 25678899999999999999999999999998887744
Q ss_pred CCCCeeeeeecCc
Q 020025 191 KIPPAVNQVELNP 203 (332)
Q Consensus 191 ~~~~~~~q~~~~~ 203 (332)
.++ .+.--+|++
T Consensus 127 ~i~-vv~apNfSi 138 (286)
T PLN02775 127 GVY-AVIAPQMGK 138 (286)
T ss_pred Ccc-EEEECcccH
Confidence 443 444445544
No 174
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=26.07 E-value=3.4e+02 Score=21.60 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCeEecCCCcC-----------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHH
Q 020025 48 KESVVHAIEVGYRHFDTAAIYQ-----------------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVL 110 (332)
Q Consensus 48 ~~~l~~Ale~Gin~~Dta~~Yg-----------------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~ 110 (332)
...+..+++.|+|+||.=-.++ .-+-+=+.+++.+.+. +.+-|++.-|-......-+.+.
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~---p~e~VIl~l~~~~~~~~~~~l~ 107 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVT---SPYPVILSLENHCSPDQQAKMA 107 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhC---CCCcEEEeehhhCCHHHHHHHH
Confidence 4578899999999998321111 1122333334443333 6777778888643221123344
Q ss_pred HHHHHHH
Q 020025 111 PALQTSL 117 (332)
Q Consensus 111 ~~le~sL 117 (332)
+-+++.|
T Consensus 108 ~~l~~~~ 114 (135)
T smart00148 108 QMFKEIF 114 (135)
T ss_pred HHHHHHH
Confidence 4444444
No 175
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.01 E-value=3.6e+02 Score=25.50 Aligned_cols=78 Identities=26% Similarity=0.223 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCC----cceeccC--CCcHHHHHHHHHHcC-CCCeeeeeecCcccch----------HHHHHHH
Q 020025 152 LDYEGVWEAMEECQNLGL----TKSIGVS--NFACKKLERLLATAK-IPPAVNQVELNPVWQQ----------KKLRDFC 214 (332)
Q Consensus 152 ~~~~~~~~~L~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~~~ 214 (332)
...++++++++.+.+++. ++|+=+. |-+.++++++.+... .+..++-++||++... ..+.+.+
T Consensus 243 ~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L 322 (356)
T PRK14455 243 YPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTL 322 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHH
Confidence 347899999998877542 3455333 334566666666543 4456777788886421 3456668
Q ss_pred HHhCceEEEeccCCC
Q 020025 215 EKKGIHITAYSPLGA 229 (332)
Q Consensus 215 ~~~gi~v~a~~~l~~ 229 (332)
+++|+.+......|.
T Consensus 323 ~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 323 KKNGVNCTIRREHGT 337 (356)
T ss_pred HHCCCcEEEeCCCCc
Confidence 889999988877654
No 176
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=26.00 E-value=91 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ 69 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg 69 (332)
.....+....+++.|++.||.+..|.
T Consensus 76 ~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 76 HGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred hhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 67788999999999999999999984
No 177
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.75 E-value=5.6e+02 Score=24.07 Aligned_cols=147 Identities=14% Similarity=0.199 Sum_probs=76.3
Q ss_pred CCCcEEEEeccCC-CCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 020025 89 SRDELFITSKLWF-GHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNL 167 (332)
Q Consensus 89 ~R~~~~I~tK~~~-~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 167 (332)
.-.+.||..-.+. ++.+-+...+.++..-+ -|.|-+-+-..+-++..++.. -...
T Consensus 11 ~~~~~~iIAEig~NHnG~le~A~~lIdaAk~-aGADavKfQt~~~~d~~t~~~-----------------------~~~~ 66 (347)
T COG2089 11 KDKKPFIIAEIGANHNGDLERAKELIDAAKE-AGADAVKFQTFYTPDIMTLES-----------------------KNVP 66 (347)
T ss_pred CCCCcEEEeeecccccCcHHHHHHHHHHHHH-cCcceeeeecccccccccccc-----------------------cCCc
Confidence 4456777777754 45566666666666555 786655544334443322210 0001
Q ss_pred CCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHH
Q 020025 168 GLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKE 247 (332)
Q Consensus 168 G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~ 247 (332)
.+|. ..+....+-++.+...++ +....++.++|++.||.++. +|+.. .. ..
T Consensus 67 ~~i~----~~~~~~slyel~e~~~~p----------~e~~~~Lke~a~~~Gi~~~S-SPfd~-~s-------------vd 117 (347)
T COG2089 67 FKIK----TLWDKVSLYELYEEAETP----------LEWHAQLKEYARKRGIIFFS-SPFDL-TA-------------VD 117 (347)
T ss_pred cccc----cccccccHHHHHHHhcCC----------HHHHHHHHHHHHHcCeEEEe-cCCCH-HH-------------HH
Confidence 1111 222333334444544432 23346899999999999887 78865 11 11
Q ss_pred HHHHcCCC---------HHHHHHHHHHhCC--CEEEeCCCCHHHHHHhHccc
Q 020025 248 IANAKGKS---------VAQVSLRWVYQQG--VSLVVKSFNKERMKENLDIF 288 (332)
Q Consensus 248 la~~~~~s---------~~qlal~~~l~~~--~~~i~g~~~~~~l~~nl~a~ 288 (332)
+.++++.+ .--=.|.|+.+.+ ...-.|+.+.+++++.++.+
T Consensus 118 ~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~ 169 (347)
T COG2089 118 LLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAIL 169 (347)
T ss_pred HHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHH
Confidence 11111110 0011355555554 55556788888888777664
No 178
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=25.73 E-value=6.7e+02 Score=24.93 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC--ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ--SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLG 121 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg--se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg 121 (332)
.+-+.+++.....+|.+.|--++.-| +-..+|+-++ +++..++ -|+++.|++.++... ....++-+..+ .-|
T Consensus 203 ~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~-y~~tn~~-~~e~v~Is~HcHND~---G~a~Ant~~g~-~AG 276 (560)
T KOG2367|consen 203 LEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIE-YLKTNTP-GREKVCISTHCHNDL---GCATANTELGL-LAG 276 (560)
T ss_pred HHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHH-HHHccCC-CceeEEEEEeecCCc---cHHHHHHHHHh-hcC
Confidence 78899999999999999887777777 5666777766 3444554 699999999986432 22223333322 357
Q ss_pred CCcccEEeeccCC
Q 020025 122 LEHIDLYLIHFPV 134 (332)
Q Consensus 122 ~d~iDl~~lH~p~ 134 (332)
-++||..++-.-.
T Consensus 277 A~~VE~~i~GiGE 289 (560)
T KOG2367|consen 277 ARQVEVTINGIGE 289 (560)
T ss_pred cceEEEEeecccc
Confidence 7999999887543
No 179
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.54 E-value=6.4e+02 Score=24.64 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CcceeccC--CC--cHHHHHHHHHH---cCCCCeeeeeecCcccchHHHHHHHHHhCce
Q 020025 149 IEPLDYEGVWEAMEECQNLG-LTKSIGVS--NF--ACKKLERLLAT---AKIPPAVNQVELNPVWQQKKLRDFCEKKGIH 220 (332)
Q Consensus 149 ~~~~~~~~~~~~L~~l~~~G-~ir~iGvs--~~--~~~~l~~~~~~---~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~ 220 (332)
+.....+.+++.++.+++.. .++.|-+. +| +...+.++++. .++.+. .+...+ -..++++..++.|+.
T Consensus 224 ~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~~~---~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 224 YRTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNARAN---VDYETLKVMKENGLR 299 (472)
T ss_pred eEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEecCC---CCHHHHHHHHHcCCC
Confidence 34457889999999999874 56655443 23 23444444332 222211 112212 246889999998887
Q ss_pred EEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHHHHHhCC----CEEEeCC--CCHHHHHHhHccc
Q 020025 221 ITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLRWVYQQG----VSLVVKS--FNKERMKENLDIF 288 (332)
Q Consensus 221 v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~----~~~i~g~--~~~~~l~~nl~a~ 288 (332)
.+..+.=.+ ..+.+..+.+.+...-..-+++++...| ...|+|. .+.+.+.+.++.+
T Consensus 300 ~v~iGiES~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~ 362 (472)
T TIGR03471 300 LLLVGYESG-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFA 362 (472)
T ss_pred EEEEcCCCC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 665433322 2345555533332223445677777777 3467884 6888888887764
No 180
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.53 E-value=3e+02 Score=26.61 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccch---HHHHHHHHHhCceEEEeccCCCC
Q 020025 154 YEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQ---KKLRDFCEKKGIHITAYSPLGAK 230 (332)
Q Consensus 154 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~~l~~~ 230 (332)
...+..-++.+.++.-|....+..-+...+.+.+.....+.++...+-||..+- ..+.+.|+++|+.++.=++++.
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat- 190 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT- 190 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-
Confidence 456788888888888877777777666666665544456677888888887663 6788999999998888888876
Q ss_pred CCCC
Q 020025 231 GTIW 234 (332)
Q Consensus 231 G~l~ 234 (332)
+.+.
T Consensus 191 P~~q 194 (396)
T COG0626 191 PVLQ 194 (396)
T ss_pred cccc
Confidence 6654
No 181
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.48 E-value=1.3e+02 Score=23.98 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceecc
Q 020025 110 LPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGV 175 (332)
Q Consensus 110 ~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 175 (332)
+..+.+.|+.+....+|.++++..++... ...+....++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R--------------~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGR--------------NYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhcc--------------CHHHHHHHHHHHHhhcCcEEEEe
Confidence 45667777777777899999998877643 35677777888887733444433
No 182
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=25.26 E-value=6.4e+02 Score=24.60 Aligned_cols=153 Identities=12% Similarity=0.185 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC--ChHHHHHH---HHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ--SEEPLGEA---IAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLK 118 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg--se~~vG~a---l~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~ 118 (332)
+....+.+...+..+..--|.- .|+ ++..+-.+ +++++-+ ..+++.. |... .-+-.-+.+++-....
T Consensus 56 ~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInA----d~~dIiF-ts~A--TEs~Nlvl~~v~~~~~ 127 (428)
T KOG1549|consen 56 DPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINA----DPSDIVF-TSGA--TESNNLVLKGVARFFG 127 (428)
T ss_pred CHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCC----CCCcEEE-eCCc--hHHHHHHHHHhhcccc
Confidence 4556666667776665534333 455 44323322 3334322 3344433 3321 1111334444444444
Q ss_pred hhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-cceeccCCCcHHHHHHHHHHcCCCCe--
Q 020025 119 NLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGL-TKSIGVSNFACKKLERLLATAKIPPA-- 195 (332)
Q Consensus 119 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~-- 195 (332)
. ++++ .++.+|.- -.-+.+..+.++++|. ++++.|.+-....++.+.+..+.+..
T Consensus 128 ~-~~~k-~iitl~~e--------------------H~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv 185 (428)
T KOG1549|consen 128 D-KTKK-HIITLQTE--------------------HPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLV 185 (428)
T ss_pred c-cccc-eEEEeccc--------------------CcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEE
Confidence 4 4443 56666632 1235666777788884 48888886444444444443332211
Q ss_pred ---eeeeecCcccchHHHHHHHHHhCceEEEecc
Q 020025 196 ---VNQVELNPVWQQKKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 196 ---~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~ 226 (332)
.+-.......+=+++...|++.||.++.-..
T Consensus 186 ~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaA 219 (428)
T KOG1549|consen 186 SIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAA 219 (428)
T ss_pred EEEecccCccccccHHHHHHHhCcCCcEEEeehh
Confidence 1111222233337888899999887776533
No 183
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.20 E-value=91 Score=26.05 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcC-CcceeccCCCc--HHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEE
Q 020025 153 DYEGVWEAMEECQNLG-LTKSIGVSNFA--CKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITA 223 (332)
Q Consensus 153 ~~~~~~~~L~~l~~~G-~ir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a 223 (332)
..-+++++|.++++.| +|..+|..+.. ...+.+++ +. .+.+..|+-...-...+..+++.|+.++.
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T---EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3568899999988776 66666666644 34444444 33 35555655433336778889999998887
No 184
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.16 E-value=6.3e+02 Score=24.41 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=84.2
Q ss_pred CcCChHHHHHHHHHHHhcCCCCCC-CcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCC
Q 020025 67 IYQSEEPLGEAIAQALRLGLIKSR-DELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFS 145 (332)
Q Consensus 67 ~Ygse~~vG~al~~~~~~g~~~~R-~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~ 145 (332)
.||.++-+-+++++..+.. ++ +-++|.|-+.+.-. -+.+..-+++.-++++ ++++.+|.|..... . .
T Consensus 79 VfGg~~kL~~~I~~~~~~~---~p~~~I~V~tTC~~~iI-GdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~-s---~- 146 (421)
T cd01976 79 VFGGDKKLAKAIDEAYELF---PLNKGISVQSECPVGLI-GDDIEAVARKASKELG---IPVVPVRCEGFRGV-S---Q- 146 (421)
T ss_pred ecCCHHHHHHHHHHHHHhC---CCccEEEEECCChHHHh-ccCHHHHHHHHHHhhC---CCEEEEeCCCccCC-c---c-
Confidence 4677888888888875543 34 66777776643211 1233333443333444 67889998865321 0 0
Q ss_pred CCCCCCCCHHHHHHHHHHH-----HHcCCcceeccCCC--cHHHHHHHHHHcCCCCeeeee--------------ecCcc
Q 020025 146 KEDIEPLDYEGVWEAMEEC-----QNLGLTKSIGVSNF--ACKKLERLLATAKIPPAVNQV--------------ELNPV 204 (332)
Q Consensus 146 ~~~~~~~~~~~~~~~L~~l-----~~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~--------------~~~~~ 204 (332)
..-.......+++.|... +..+.|.-||-.++ +..++.++++..++++...-. .+|+.
T Consensus 147 -~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv 225 (421)
T cd01976 147 -SLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLI 225 (421)
T ss_pred -cHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEE
Confidence 000000112233333221 11467888885553 346688888877665332111 12222
Q ss_pred cchH---HHHHHH-HHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCC
Q 020025 205 WQQK---KLRDFC-EKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKS 255 (332)
Q Consensus 205 ~~~~---~l~~~~-~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s 255 (332)
.... .+.++. ++.||+++...|++- - -....++++++..|.+
T Consensus 226 ~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi---~------~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 226 HCYRSMNYIARMMEEKYGIPWMEYNFFGP---T------KIAESLRKIAAYFDDE 271 (421)
T ss_pred ECcHHHHHHHHHHHHHhCCcEEecccCCH---H------HHHHHHHHHHHHhCch
Confidence 1111 233344 457999998776543 1 1234556666666554
No 185
>PRK10799 metal-binding protein; Provisional
Probab=24.87 E-value=1e+02 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=18.9
Q ss_pred HHHHHHhCCCeEecCCCcCChHHHHHHHHHHH
Q 020025 51 VVHAIEVGYRHFDTAAIYQSEEPLGEAIAQAL 82 (332)
Q Consensus 51 l~~Ale~Gin~~Dta~~Ygse~~vG~al~~~~ 82 (332)
...|.+.|++.+|.+ +|.+|...-+.|.+.+
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L 230 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSEWL 230 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHHHH
Confidence 456677777777755 6666666444454443
No 186
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.87 E-value=5.6e+02 Score=23.75 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCcceeccCCC-cHHHHHHHHHHcCCC
Q 020025 158 WEAMEECQNLGLTKSIGVSNF-ACKKLERLLATAKIP 193 (332)
Q Consensus 158 ~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~ 193 (332)
++.+.++++.=.+--++..+. +++.++++++....+
T Consensus 279 ~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD 315 (336)
T cd02932 279 VPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRAD 315 (336)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 455566666656666776664 677788887765443
No 187
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.85 E-value=5.2e+02 Score=23.35 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHhCCCeEec----------CCCcC-ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHH
Q 020025 44 TEAVKESVVHAIEVGYRHFDT----------AAIYQ-SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPA 112 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dt----------a~~Yg-se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~ 112 (332)
.++..+..+.+.+.|+..||. ...|+ +.+.+-+.++... ..-++-|..|+.+.. +.+ ..
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr------~~~~~Pv~vKl~~~~---~~~-~~ 170 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK------KATDVPVIVKLTPNV---TDI-VE 170 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH------hccCCCEEEEeCCCc---hhH-HH
Confidence 677788888888999999986 22343 5566666666541 111567888985432 222 23
Q ss_pred HHHHHHhhCCCcccEEee-ccCCCCCCCCCCCCCC---CCCC-CCCHHHHHHHHHHHHHcCCcceeccCCC-cHHHHHHH
Q 020025 113 LQTSLKNLGLEHIDLYLI-HFPVSLKPGTGFPFSK---EDIE-PLDYEGVWEAMEECQNLGLTKSIGVSNF-ACKKLERL 186 (332)
Q Consensus 113 le~sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~---~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~ 186 (332)
+-+.++..|.|.+++.-. +.... +..+..+... ..+. .....-.++.+.++++.=.+.-||+... +++.+.++
T Consensus 171 ~a~~~~~~G~d~i~~~nt~~g~~~-~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 171 IARAAEEAGADGLTLINTLKGMAI-DIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHcCCCEEEEECCCccccc-ccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 334567788777765411 00000 0000000000 0000 0111235566667766556777887775 57777777
Q ss_pred HHHcCCCCeeeee
Q 020025 187 LATAKIPPAVNQV 199 (332)
Q Consensus 187 ~~~~~~~~~~~q~ 199 (332)
++.+ . +.+|+
T Consensus 250 l~~G-A--d~V~i 259 (296)
T cd04740 250 LMAG-A--SAVQV 259 (296)
T ss_pred HHcC-C--CEEEE
Confidence 7633 3 35554
No 188
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=24.85 E-value=5.2e+02 Score=23.93 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceec-cCCCcHHHHHHHHHH
Q 020025 150 EPLDYEGVWEAMEECQNLGLTKSIG-VSNFACKKLERLLAT 189 (332)
Q Consensus 150 ~~~~~~~~~~~L~~l~~~G~ir~iG-vs~~~~~~l~~~~~~ 189 (332)
.+..+++.-+.+..++++|.++-|| .|.-+|++++.+.+.
T Consensus 268 Y~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~ 308 (311)
T COG0646 268 YDLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEA 308 (311)
T ss_pred cCCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHH
Confidence 4566889999999999999999997 555778998877653
No 189
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=24.84 E-value=3e+02 Score=20.55 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=34.3
Q ss_pred HHHHH-HHhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC
Q 020025 50 SVVHA-IEVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE 123 (332)
Q Consensus 50 ~l~~A-le~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d 123 (332)
.+... .++|+|..|++ +.+-+ | +-.+.+..-+.....+...+++.++.-.++||++
T Consensus 19 ~is~vLAe~~vNIldis----------Qtvm~----~----~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 19 AVSRVLAEHGVNILDIS----------QTVMD----G----FFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred HHHHHHHHcCCcEEEHH----------HHHHh----h----hceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence 34444 48999999965 33321 1 1112222223333556788999999999999964
No 190
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=24.72 E-value=2.1e+02 Score=21.54 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=36.6
Q ss_pred CCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEeccCCC
Q 020025 176 SNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 176 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
+.++...+.++++...+ +++|+....+ ..-..+.+.|+++|+.++.++. .+
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 56778888888886655 4777664433 2236889999999999999887 54
No 191
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=24.62 E-value=1.7e+02 Score=27.37 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCcceeccCCCcHHHH-----HHHHHHc----CCCCee----------eeeecCcccchHHHHHHH
Q 020025 154 YEGVWEAMEECQNLGLTKSIGVSNFACKKL-----ERLLATA----KIPPAV----------NQVELNPVWQQKKLRDFC 214 (332)
Q Consensus 154 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l-----~~~~~~~----~~~~~~----------~q~~~~~~~~~~~l~~~~ 214 (332)
..+.++.|+.+.+.++|+.+.+-+|+|.+- +.+..+. +..+.- .|-.+. ...-..+++.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~A 172 (325)
T cd01306 94 DPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYA-PANRSELAALA 172 (325)
T ss_pred CccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHH
Confidence 357899999999999999999999997652 2222221 111000 000111 01115679999
Q ss_pred HHhCceEEEec
Q 020025 215 EKKGIHITAYS 225 (332)
Q Consensus 215 ~~~gi~v~a~~ 225 (332)
+++|+.+.++-
T Consensus 173 ~~~gl~vasH~ 183 (325)
T cd01306 173 RARGIPLASHD 183 (325)
T ss_pred HHCCCcEEEec
Confidence 99999998875
No 192
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.58 E-value=4.7e+02 Score=24.95 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=59.7
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHcC---CcceeccCC--CcHHHHHHHHHHcC-CCCeeeee
Q 020025 127 LYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEE-CQNLG---LTKSIGVSN--FACKKLERLLATAK-IPPAVNQV 199 (332)
Q Consensus 127 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-l~~~G---~ir~iGvs~--~~~~~l~~~~~~~~-~~~~~~q~ 199 (332)
.+-||.++......-.|... ....++++++++.+ +.+.| +|+++=+.. .+.+++.++.+... ....++-+
T Consensus 237 aiSL~a~~~e~r~~i~P~~~---~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlI 313 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAA---RDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLI 313 (368)
T ss_pred EEEecCCCHHHHHHhccccC---CCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEe
Confidence 46788876533211001100 13467889998886 45556 345554443 34455666665543 34567778
Q ss_pred ecCcccch----------HHHHHHHHHhCceEEEeccCCC
Q 020025 200 ELNPVWQQ----------KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 200 ~~~~~~~~----------~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
+||++... ..+.+..+++|+.+......|.
T Consensus 314 pyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 314 DYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred eeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 88876431 3566778889999998887764
No 193
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.40 E-value=6.6e+02 Score=24.35 Aligned_cols=115 Identities=10% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC-cccEEeeccCCCCCCCCCCC
Q 020025 65 AAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE-HIDLYLIHFPVSLKPGTGFP 143 (332)
Q Consensus 65 a~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d-~iDl~~lH~p~~~~~~~~~~ 143 (332)
.-.||.++-+-+++++..+.. +.+-++|.|-+.+.-. -+.+..-+++.-++.... .+.++.++.|.....
T Consensus 64 d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~~ii-GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs----- 134 (435)
T cd01974 64 AAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMAEVI-GDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGS----- 134 (435)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHhhh-hccHHHHHHHHHHhccCCCCCeEEEecCCCCccC-----
Confidence 345778888888888765442 4555677776633211 123333333322332111 478999998855321
Q ss_pred CCCCCCCCCCHHHHHHHHHH-HH-------HcCCcceec-cCCC-c-HHHHHHHHHHcCCCC
Q 020025 144 FSKEDIEPLDYEGVWEAMEE-CQ-------NLGLTKSIG-VSNF-A-CKKLERLLATAKIPP 194 (332)
Q Consensus 144 ~~~~~~~~~~~~~~~~~L~~-l~-------~~G~ir~iG-vs~~-~-~~~l~~~~~~~~~~~ 194 (332)
. ....+.++++|-+ +. +.++|.-|| ..+. + .+++.++++..++.+
T Consensus 135 ----~--~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 135 ----H--ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred ----H--HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 0 0112334444432 22 234566665 3222 2 578888888777664
No 194
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=24.09 E-value=4.3e+02 Score=22.07 Aligned_cols=93 Identities=9% Similarity=-0.064 Sum_probs=49.7
Q ss_pred HHHcCCcceeccCCCcHHHHH----HHHHHcCCCCeeeeeecCcccch----------HHHHHHHHHhCceEEEecc-CC
Q 020025 164 CQNLGLTKSIGVSNFACKKLE----RLLATAKIPPAVNQVELNPVWQQ----------KKLRDFCEKKGIHITAYSP-LG 228 (332)
Q Consensus 164 l~~~G~ir~iGvs~~~~~~l~----~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~~-l~ 228 (332)
+.....|..-|++..+...+. +.+.....+.+++++-.|-..+. +.+++.++++++.++...+ +-
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 445567899999998875543 22222234455666655544221 4678888888876655431 11
Q ss_pred CCCCCCCCccccchHHHHHHHHHcCCCHHH
Q 020025 229 AKGTIWGTNRVMECQMLKEIANAKGKSVAQ 258 (332)
Q Consensus 229 ~~G~l~~~~~~~~~~~l~~la~~~~~s~~q 258 (332)
. .........-.+.++++|+++++....
T Consensus 120 ~--~~~~~~~~~~~~~~~~~a~~~~v~~id 147 (191)
T PRK10528 120 A--NYGRRYNEAFSAIYPKLAKEFDIPLLP 147 (191)
T ss_pred C--cccHHHHHHHHHHHHHHHHHhCCCccH
Confidence 1 000000001123466777777766544
No 195
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=24.09 E-value=7.6e+02 Score=25.01 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHhCCC-eEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEec--------c--CCCCCChhhHHHH
Q 020025 44 TEAVKESVVHAIEVGYR-HFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSK--------L--WFGHAHRQLVLPA 112 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin-~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK--------~--~~~~~~~~~i~~~ 112 (332)
.++-.+=+..|++.|-. ..|-+.. |.-..+-+++- ....+-|.|- + ...+.+.+.+...
T Consensus 231 ieeEveK~~~A~~~GADtvMDLSTG-gdi~~~R~~Il---------~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ 300 (607)
T PRK09284 231 IEEEVEKMVWATRWGADTVMDLSTG-KNIHETREWIL---------RNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDT 300 (607)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCC-CCHHHHHHHHH---------HcCCCCccCccHHHHHHHhcCChhhCCHHHHHHH
Confidence 44445557899999975 5676533 22222222321 1112222221 1 1235567777877
Q ss_pred HHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCC
Q 020025 113 LQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKI 192 (332)
Q Consensus 113 le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 192 (332)
+++..+ +=+|.+-+|.- -..+.+..++ + |..|+-+-.-.-+..+.....
T Consensus 301 ieeQAe----qGVDf~TIHaG----------------------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~- 349 (607)
T PRK09284 301 LIEQAE----QGVDYFTIHAG----------------------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH- 349 (607)
T ss_pred HHHHHH----hCCCEEEEChh----------------------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC-
Confidence 777776 55888999963 2345555554 3 778888877777776665432
Q ss_pred CCeeeeeecCcccch-HHHHHHHHHhCceEEE
Q 020025 193 PPAVNQVELNPVWQQ-KKLRDFCEKKGIHITA 223 (332)
Q Consensus 193 ~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a 223 (332)
.=|++..+ .++++.|++++|.+-.
T Consensus 350 -------kENplYe~FD~ileI~k~YDVtlSL 374 (607)
T PRK09284 350 -------KENFLYTHFEEICEIMAAYDVSFSL 374 (607)
T ss_pred -------CcCcHHHHHHHHHHHHHHhCeeeec
Confidence 12344333 6799999999998854
No 196
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=24.06 E-value=6.5e+02 Score=24.15 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccc---hHHHHHHHHHhCceEEEeccCCC
Q 020025 155 EGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQ---QKKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 155 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
..++..+..+.+.+.++.+-+...+.+.++++++ ...+.+++..+-|+.-. -+++.+.|+++|+.++.=.+.+.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~-~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALA-QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcC-cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 3555556665555556666665556777776664 23344454445555432 26789999999998887666543
No 197
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=24.02 E-value=3.9e+02 Score=23.52 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC-----hhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCC
Q 020025 73 PLGEAIAQALRLGLIKSRDELFITSKLWFGHAH-----RQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKE 147 (332)
Q Consensus 73 ~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~-----~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 147 (332)
..|-.|..+.++| .+=.+...|+....... .+.=++.++.+++.||++. +.+|-.++...
T Consensus 26 g~ggtla~~~~~G---~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~--~~~l~~~~~~~---------- 90 (237)
T COG2120 26 GCGGTLAKLAARG---VEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGVRE--TIFLGFPDTGA---------- 90 (237)
T ss_pred ccHHHHHHHHHCC---CeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCCCc--ceecCCCcccc----------
Confidence 3456666665556 34444444554221111 1224677888899999865 45554442211
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC
Q 020025 148 DIEPLDYEGVWEAMEECQNLGL 169 (332)
Q Consensus 148 ~~~~~~~~~~~~~L~~l~~~G~ 169 (332)
..+.+++.++|.++.++-+
T Consensus 91 ---~~~~~~~~~~L~~ii~~~~ 109 (237)
T COG2120 91 ---DADPEEITGALVAIIRRLR 109 (237)
T ss_pred ---ccChHHHHHHHHHHHHHhC
Confidence 2335666666666654433
No 198
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=23.95 E-value=5.2e+02 Score=23.00 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=78.3
Q ss_pred HHHHHhCCCeEecCCCc-C-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcc
Q 020025 52 VHAIEVGYRHFDTAAIY-Q-----SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHI 125 (332)
Q Consensus 52 ~~Ale~Gin~~Dta~~Y-g-----se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~i 125 (332)
..|++.|...||.=..- | ....+- .++.. -....-++.-++-....+..+..+....- .-|+||+
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~-~i~~~-------~~~~~pvSAtiGDlp~~p~~~~~aa~~~a-~~Gvdyv 84 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIR-EIVAA-------VPGRKPVSATIGDLPMKPGTASLAALGAA-ATGVDYV 84 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHH-HHHHH-------cCCCCceEEEecCCCCCchHHHHHHHHHH-hcCCCEE
Confidence 56789999999975443 3 244443 44433 23335677777766666777766666554 3588988
Q ss_pred cEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHcCCcceeccCCCc------HHHHHHHHHHcCC
Q 020025 126 DLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEEC-------QNLGLTKSIGVSNFA------CKKLERLLATAKI 192 (332)
Q Consensus 126 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-------~~~G~ir~iGvs~~~------~~~l~~~~~~~~~ 192 (332)
-+=+.-..+ ..+..+.|+.+ -.+.++-..+.+.+. +..+-++....++
T Consensus 85 KvGl~g~~~-------------------~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 85 KVGLFGCKD-------------------YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGF 145 (235)
T ss_pred EEecCCCCC-------------------HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCC
Confidence 876654321 23334433332 234567777888874 4455555555555
Q ss_pred CCeeeee----ecCcccc---h--HHHHHHHHHhCceE
Q 020025 193 PPAVNQV----ELNPVWQ---Q--KKLRDFCEKKGIHI 221 (332)
Q Consensus 193 ~~~~~q~----~~~~~~~---~--~~l~~~~~~~gi~v 221 (332)
...++-+ .-++++. + .+.++.|+++|+.+
T Consensus 146 ~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred CEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 4333211 1112211 1 35666777777543
No 199
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=23.72 E-value=7e+02 Score=24.46 Aligned_cols=118 Identities=11% Similarity=0.048 Sum_probs=62.4
Q ss_pred cCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC----cccEEeeccCCCCCCC
Q 020025 64 TAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE----HIDLYLIHFPVSLKPG 139 (332)
Q Consensus 64 ta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d----~iDl~~lH~p~~~~~~ 139 (332)
..-.||.++-+-++|++..+... ..+-++|.|-+...-. -+.+..-++..-+++.-+ .+.++.++.|+....
T Consensus 67 ~dvVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~eiI-GDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs- 142 (457)
T TIGR02932 67 ESAVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCSTETI-GDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS- 142 (457)
T ss_pred CceEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchHHhh-cCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc-
Confidence 33457888888889888654320 1345677666633211 123333333332222111 368899998866432
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH------HcCCcceeccCCC--cHHHHHHHHHHcCCCCe
Q 020025 140 TGFPFSKEDIEPLDYEGVWEAMEECQ------NLGLTKSIGVSNF--ACKKLERLLATAKIPPA 195 (332)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~L~~l~------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~ 195 (332)
. ....+.++++|-+.. .+++|.-||-.+. +.+.+.++++..++.+.
T Consensus 143 --------~--~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn 196 (457)
T TIGR02932 143 --------Q--VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDAN 196 (457)
T ss_pred --------H--HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 0 112334444444322 2467888864432 45577788887766543
No 200
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=23.61 E-value=3.4e+02 Score=20.83 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=44.5
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC---CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 020025 89 SRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL---EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQ 165 (332)
Q Consensus 89 ~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 165 (332)
+|=.+.|+-|++. ...+..+++.+.+.++.... ...|++++-.+... ..+..++-+.|..|.
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~--------------~~~~~~l~~~l~~ll 102 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAA--------------ELDYKEIKKSLIHVL 102 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcc--------------cCCHHHHHHHHHHHH
Confidence 5666777777765 66788899999888886643 35799998877443 234667777777765
Q ss_pred Hc
Q 020025 166 NL 167 (332)
Q Consensus 166 ~~ 167 (332)
+.
T Consensus 103 ~k 104 (114)
T PRK00499 103 KL 104 (114)
T ss_pred HH
Confidence 54
No 201
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=23.55 E-value=6.4e+02 Score=23.96 Aligned_cols=94 Identities=12% Similarity=-0.030 Sum_probs=51.3
Q ss_pred CCCcEEEEeccCCCCC-C---h-hhHHHHHHHHHHhhC-CCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 020025 89 SRDELFITSKLWFGHA-H---R-QLVLPALQTSLKNLG-LEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAME 162 (332)
Q Consensus 89 ~R~~~~I~tK~~~~~~-~---~-~~i~~~le~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 162 (332)
-.+++.|.-++.+.+. . . -.-...+-+.|+.+| +||+++.--+.-..... . .....-......
T Consensus 213 vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~---------~--~~~~~~~~~~a~ 281 (363)
T COG1902 213 VGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTI---------T--VSGPGYQVEFAA 281 (363)
T ss_pred hCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCc---------c--ccccchhHHHHH
Confidence 3455567777755333 1 1 113355667788888 68888877665211100 0 000122334445
Q ss_pred HHHHcCCcceeccC-CCcHHHHHHHHHHcCCC
Q 020025 163 ECQNLGLTKSIGVS-NFACKKLERLLATAKIP 193 (332)
Q Consensus 163 ~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~ 193 (332)
.++....+--|.+. .++++..+++++.+..+
T Consensus 282 ~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD 313 (363)
T COG1902 282 RIKKAVRIPVIAVGGINDPEQAEEILASGRAD 313 (363)
T ss_pred HHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 56666556666666 36788888888876444
No 202
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=23.24 E-value=3.9e+02 Score=21.29 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC----CcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 020025 89 SRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL----EHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEEC 164 (332)
Q Consensus 89 ~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~----d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 164 (332)
+|=.+.|+-|++ ....+..+++.+.++++.+.. ...|++++-.+... ..+..++-+.|..+
T Consensus 47 ~RvG~~VSKKvG-~AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~--------------~~~~~~l~~~L~~~ 111 (129)
T PRK01313 47 PRVGFTVTKKNG-NAVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDAL--------------NAPFSQLTEELSRR 111 (129)
T ss_pred cEEEEEEecccC-cchHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccc--------------cCCHHHHHHHHHHH
Confidence 455566777765 455678899999999887653 45899999887533 23466666666665
Q ss_pred HH
Q 020025 165 QN 166 (332)
Q Consensus 165 ~~ 166 (332)
.+
T Consensus 112 l~ 113 (129)
T PRK01313 112 IE 113 (129)
T ss_pred HH
Confidence 54
No 203
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=23.14 E-value=6.1e+02 Score=23.51 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHhCCCeEecC----------CCcC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEeccC--CCCCCh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTA----------AIYQ-----SEEPLGEAIAQALRLGLIKSRDELFITSKLW--FGHAHR 106 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta----------~~Yg-----se~~vG~al~~~~~~g~~~~R~~~~I~tK~~--~~~~~~ 106 (332)
.++..+..+.+.+.|+..||.- ..+| ....+.+.++..... - ++-|+.|+. .... .
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a----~--d~pv~vKiR~G~~~~-~ 148 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA----V--DVPVTLKIRTGWAPE-H 148 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh----c--CCceEEEEEccccCC-c
Confidence 6777777888888999999943 2334 234555555543111 1 345777762 2221 1
Q ss_pred hhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCC-cHHHHHH
Q 020025 107 QLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNF-ACKKLER 185 (332)
Q Consensus 107 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~ 185 (332)
... ..+-+.++..| +|.+.+|.-..... + . -..-|+.+.++++.=.|--||.... +++.+.+
T Consensus 149 ~~~-~~~a~~le~~G---~d~i~vh~rt~~~~---~--------~--G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~ 211 (321)
T PRK10415 149 RNC-VEIAQLAEDCG---IQALTIHGRTRACL---F--------N--GEAEYDSIRAVKQKVSIPVIANGDITDPLKARA 211 (321)
T ss_pred chH-HHHHHHHHHhC---CCEEEEecCccccc---c--------C--CCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 112 23334466777 46677886432110 0 0 0123677778877767777877774 6778888
Q ss_pred HHHHcCCCCeeeeee
Q 020025 186 LLATAKIPPAVNQVE 200 (332)
Q Consensus 186 ~~~~~~~~~~~~q~~ 200 (332)
+++..+.+ .+++-
T Consensus 212 ~l~~~gad--gVmiG 224 (321)
T PRK10415 212 VLDYTGAD--ALMIG 224 (321)
T ss_pred HHhccCCC--EEEEC
Confidence 88765544 55554
No 204
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.13 E-value=81 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCceEEEeccCCC
Q 020025 208 KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 208 ~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
.++++.|++.||.+++|-.+..
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 6889999999999999977754
No 205
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.12 E-value=2e+02 Score=24.90 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCcceeccCC-CcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEE
Q 020025 152 LDYEGVWEAMEECQNLGLTKSIGVSN-FACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHIT 222 (332)
Q Consensus 152 ~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~ 222 (332)
+...+..+.+++++++..=-.||..+ .+.++++++++.+ .|+-.++... .+++++|+++||.++
T Consensus 37 ~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG------A~FivSP~~~-~~vi~~a~~~~i~~i 101 (201)
T PRK06015 37 LRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG------SRFIVSPGTT-QELLAAANDSDVPLL 101 (201)
T ss_pred CCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC------CCEEECCCCC-HHHHHHHHHcCCCEe
No 206
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.07 E-value=3.3e+02 Score=23.04 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCccCeecccccccCCCCChHHHHHHHHHHHHhCCCeEecCCCcCC---hHHHHHHHHHHHhcCCCCCCCcEEEEeccCC
Q 020025 25 GKTIPLVGFGTAQFPFGAATEAVKESVVHAIEVGYRHFDTAAIYQS---EEPLGEAIAQALRLGLIKSRDELFITSKLWF 101 (332)
Q Consensus 25 g~~vs~lglG~~~~~~~~~~~~~~~~l~~Ale~Gin~~Dta~~Ygs---e~~vG~al~~~~~~g~~~~R~~~~I~tK~~~ 101 (332)
|+.+-.|||++.... +.+..+.|.. ++.-+-.+|+.+.... ++.+-.+++.. +++- |.-.+++++-+..
T Consensus 33 ~~~~iNLGfsG~~~l----e~~~a~~ia~-~~a~~~~ld~~~N~~~~~~~~~~~~fv~~i-R~~h--P~tPIllv~~~~~ 104 (178)
T PF14606_consen 33 GLDVINLGFSGNGKL----EPEVADLIAE-IDADLIVLDCGPNMSPEEFRERLDGFVKTI-REAH--PDTPILLVSPIPY 104 (178)
T ss_dssp T-EEEEEE-TCCCS------HHHHHHHHH-S--SEEEEEESHHCCTTTHHHHHHHHHHHH-HTT---SSS-EEEEE----
T ss_pred CCCeEeeeecCcccc----CHHHHHHHhc-CCCCEEEEEeecCCCHHHHHHHHHHHHHHH-HHhC--CCCCEEEEecCCc
Confidence 566777787764432 4555555543 3666667777777553 33444455543 3343 5666777776632
Q ss_pred C--------CCChhhHHHHHHHHHHhh-CCCcccEEeeccCC
Q 020025 102 G--------HAHRQLVLPALQTSLKNL-GLEHIDLYLIHFPV 134 (332)
Q Consensus 102 ~--------~~~~~~i~~~le~sL~~L-g~d~iDl~~lH~p~ 134 (332)
. .......++.+++..+.| .-..-++++++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 105 PAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 2 123456778888888888 22356888888654
No 207
>PLN00191 enolase
Probab=22.84 E-value=7.4e+02 Score=24.41 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccC--CCcHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVS--NFACKK 182 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs--~~~~~~ 182 (332)
+++.+.+-+...+ +..++.++-.|-. .+-|+.+.+|.+..++.-+|=- ..++..
T Consensus 296 s~~e~i~~~~~L~-----~~y~I~~IEDPl~-------------------~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~ 351 (457)
T PLN00191 296 SGDELIDLYKEFV-----SDYPIVSIEDPFD-------------------QDDWEHWAKLTSLEDVQIVGDDLLVTNPKR 351 (457)
T ss_pred CHHHHHHHHHHHh-----hcCCcEEEECCCC-------------------cccHHHHHHHHccCCCcEEccCcccCCHHH
Confidence 4444444444433 3345778887732 2347778888888888777722 256888
Q ss_pred HHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEec
Q 020025 183 LERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~ 225 (332)
+.++++....+ ++++..+.. ..-.++.+.|+++|+.++.-.
T Consensus 352 l~~~I~~~aad--~i~iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 352 VAKAIQEKACN--ALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred HHHHHHhCCCC--EEEecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 88888866544 555554432 233678999999999998643
No 208
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=22.73 E-value=3.1e+02 Score=22.31 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--cCCcceeccCCCcHHH
Q 020025 105 HRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQN--LGLTKSIGVSNFACKK 182 (332)
Q Consensus 105 ~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~ir~iGvs~~~~~~ 182 (332)
+.+.+.+.+++--+.+|++ ++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.
T Consensus 25 tl~di~~~~~~~a~~~g~~-v~~~QSN~---------------------EGelId~i~~a~~~~dgiIINpga~THtSiA 82 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVE-LEFFQSNS---------------------EGQLIDKIHEAEGQYDGIIINPGALTHTSVA 82 (141)
T ss_pred CHHHHHHHHHHHHHHcCCE-EEEEeeCc---------------------HHHHHHHHHhccccCCEEEEcChHHhhhHHH
Confidence 5688999999999999964 66665331 3578888888754 4666666777888888
Q ss_pred HHHHHHHcCCCCeeeeeecCcccch
Q 020025 183 LERLLATAKIPPAVNQVELNPVWQQ 207 (332)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~ 207 (332)
+..++....+| ++.+.++....+
T Consensus 83 l~DAl~~~~~P--~vEVHiSNi~aR 105 (141)
T TIGR01088 83 LRDALAAVSLP--VVEVHLSNVHAR 105 (141)
T ss_pred HHHHHHcCCCC--EEEEEcCCcccc
Confidence 88888877665 777777665543
No 209
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=22.72 E-value=6.1e+02 Score=23.39 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCc-ceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccC
Q 020025 158 WEAMEECQNLGLT-KSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 158 ~~~L~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
++.+.+|++.-.+ -..|=|-++...+..+++.... +++|+.....---..+.+.|+.+|+.++..+.+
T Consensus 206 ~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~--d~v~ik~~k~GGi~~~~~~a~~~gi~~~~~~~~ 274 (320)
T PRK02714 206 FDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWR--GIFVIKPAIAGSPSRLRQFCQQHPLDAVFSSVF 274 (320)
T ss_pred HHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCC--CEEEEcchhcCCHHHHHHHHHHhCCCEEEEech
Confidence 4444455443322 3444555555555555554322 234444332211134556666666666665444
No 210
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=22.71 E-value=3.7e+02 Score=20.88 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEe
Q 020025 155 EGVWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 155 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 224 (332)
..++..|...++.|++. ....+..++++......+++--+.++.+-...+..+|++++|+++-.
T Consensus 12 ~ki~~lL~la~ragkl~------~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 12 NKALEAVEKARETGKIK------KGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHcCCEe------EcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 56777788888888864 24566777777777666666556655444478899999999997653
No 211
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.68 E-value=7.5e+02 Score=24.39 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhCCCeEe--------cCCCcC-------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhH
Q 020025 45 EAVKESVVHAIEVGYRHFD--------TAAIYQ-------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLV 109 (332)
Q Consensus 45 ~~~~~~l~~Ale~Gin~~D--------ta~~Yg-------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i 109 (332)
..+.++++.|+|+|-=-+- |+..|. .++..+.++.-. + .+..+.-+|... + ....+
T Consensus 182 aaMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va-~-----ag~~iLqst~d~--~-egaa~ 252 (579)
T COG3653 182 AAMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVA-R-----AGGRILQSTHDR--D-EGAAA 252 (579)
T ss_pred HHHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHH-H-----hcCceeEeeccc--c-chHHH
Confidence 3577899999999876555 777775 356777776533 1 233344333321 1 23556
Q ss_pred HHHHHHHHHhhCC-CcccEEeeccCC
Q 020025 110 LPALQTSLKNLGL-EHIDLYLIHFPV 134 (332)
Q Consensus 110 ~~~le~sL~~Lg~-d~iDl~~lH~p~ 134 (332)
.+.++++-+.-|. -.+-+.+.|.-+
T Consensus 253 L~~l~~a~ri~~R~~~vr~v~s~~a~ 278 (579)
T COG3653 253 LEALLEASRIGNRRKGVRMVMSHSAD 278 (579)
T ss_pred HHHHHHHHHhcCcccCceEEEecccc
Confidence 7777777776644 358889988754
No 212
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=22.68 E-value=7.2e+02 Score=24.23 Aligned_cols=126 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEecCCCcC------------ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHH
Q 020025 48 KESVVHAIEVGYRHFDTAAIYQ------------SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQT 115 (332)
Q Consensus 48 ~~~l~~Ale~Gin~~Dta~~Yg------------se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~ 115 (332)
.+.++...+.|+|.+.-+-.=. +.+.+-++++...+.|+ +.+-+.-=++....+.+.+.+.++.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~----~~v~~dli~GlPgqt~e~~~~tl~~ 227 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGF----ESINFDLIYGLPHQTVESFRETLDK 227 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC----CcEEEeEEEeCCCCCHHHHHHHHHH
Q ss_pred HHHhhCCCcccEEee-ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCc
Q 020025 116 SLKNLGLEHIDLYLI-HFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFA 179 (332)
Q Consensus 116 sL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 179 (332)
.++ |+.+++.+|-+ |.|.............-.-.....+....+.+.|.+.|-.+ +|+++|.
T Consensus 228 ~~~-l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~fa 290 (453)
T PRK13347 228 VIA-LSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFA 290 (453)
T ss_pred HHh-cCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-Eecccee
No 213
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=22.53 E-value=3.4e+02 Score=20.36 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEe
Q 020025 157 VWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 224 (332)
+-.+|...++.|++. + ...+..+.++......+++--..+. ...+.+..+|++++|+++.|
T Consensus 4 ~~~~l~~a~ragkl~-~-----G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 4 FNRELRVAVDTGKVI-L-----GSKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHHHcCCEE-E-----cHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 345677788888764 2 3455666666666554444434322 33478899999999998776
No 214
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.53 E-value=6.4e+02 Score=24.34 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=59.8
Q ss_pred CcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhC-CCcccEEeeccCCCCCCCCCCCCC
Q 020025 67 IYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLG-LEHIDLYLIHFPVSLKPGTGFPFS 145 (332)
Q Consensus 67 ~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~ 145 (332)
.||.++-+-+++++..+.- +.+-++|.|-+.+.-.+ +.+..-+++.-++.- ...+.++.+|.|+.... .
T Consensus 62 VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~eiIG-dDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~----- 131 (417)
T cd01966 62 ILGGGENLEEALDTLAERA---KPKVIGLLSTGLTETRG-EDIAGALKQFRAEHPELADVPVVYVSTPDFEGS-L----- 131 (417)
T ss_pred EECCHHHHHHHHHHHHHhc---CCCEEEEECCCcccccc-cCHHHHHHHHHhhccccCCCeEEEecCCCCCCc-H-----
Confidence 4677778888887765332 45567777776443221 223333333323310 01367888998865421 0
Q ss_pred CCCCCCCCHHHHHHHHHH-H--------HHcCCcceeccCCC---cHHHHHHHHHHcCCCC
Q 020025 146 KEDIEPLDYEGVWEAMEE-C--------QNLGLTKSIGVSNF---ACKKLERLLATAKIPP 194 (332)
Q Consensus 146 ~~~~~~~~~~~~~~~L~~-l--------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~ 194 (332)
......++++|.+ + +.+++|.-||-++. +.+++.++++..++.+
T Consensus 132 -----~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 132 -----EDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred -----HHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 1112333333332 2 23567888875544 3456667777666654
No 215
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.40 E-value=4.3e+02 Score=22.49 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCcC-ChHHHH--HHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAIYQ-SEEPLG--EAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNL 120 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~Yg-se~~vG--~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~L 120 (332)
.++.....+.|.|+|..++=|+..|. .-..++ +.+++. -+.. +-.|...-..+.+...+-++.-..|+
T Consensus 130 ~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~-------~~~~--v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 130 DEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEA-------VGGR--VGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-------hCCC--ceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 68888999999999999999998886 111222 333333 1221 23344221225677777777777777
Q ss_pred CC
Q 020025 121 GL 122 (332)
Q Consensus 121 g~ 122 (332)
|+
T Consensus 201 G~ 202 (203)
T cd00959 201 GT 202 (203)
T ss_pred cC
Confidence 75
No 216
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.36 E-value=3.7e+02 Score=20.69 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.6
Q ss_pred cchHHHHHHHHHhCceEEE
Q 020025 205 WQQKKLRDFCEKKGIHITA 223 (332)
Q Consensus 205 ~~~~~l~~~~~~~gi~v~a 223 (332)
..++++.++|+++|+.++.
T Consensus 89 ~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp S--HHHHHHHHHTT-EEEE
T ss_pred hHHHHHHHHHHHcCCEEEe
Confidence 3457889999999999885
No 217
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=22.32 E-value=6.2e+02 Score=23.29 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhCCCeEe----------cCCCcC-----ChHHHHHHHHHHHhcCCCCCCCcEEEEecc--CCCCCCh
Q 020025 44 TEAVKESVVHAIEVGYRHFD----------TAAIYQ-----SEEPLGEAIAQALRLGLIKSRDELFITSKL--WFGHAHR 106 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~D----------ta~~Yg-----se~~vG~al~~~~~~g~~~~R~~~~I~tK~--~~~~~~~ 106 (332)
.+.+.+....+.+.|+..|| +...|| ....+.+.++...+. .. +-|+.|+ +..+ +.
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~----~~--~pvsvKiR~g~~~-~~ 137 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA----VP--IPVSVKIRLGWDD-SP 137 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-----S--SEEEEEEESECT---C
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc----cc--cceEEeccccccc-ch
Confidence 67777777777788999999 444455 345666666654322 12 4455555 4432 22
Q ss_pred hhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCC-CcHHHHHH
Q 020025 107 QLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSN-FACKKLER 185 (332)
Q Consensus 107 ~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~ 185 (332)
+...+ +-+.|+..| +|.+.+|.-..... .....-|+.+.++++.=.|--||=.+ ++.+.+.+
T Consensus 138 ~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~-------------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~ 200 (309)
T PF01207_consen 138 EETIE-FARILEDAG---VSAITVHGRTRKQR-------------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAER 200 (309)
T ss_dssp HHHHH-HHHHHHHTT-----EEEEECS-TTCC-------------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHH
T ss_pred hHHHH-HHHHhhhcc---cceEEEecCchhhc-------------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHH
Confidence 33333 555677777 78999997533221 11134577777777665555554333 33455555
Q ss_pred HHH
Q 020025 186 LLA 188 (332)
Q Consensus 186 ~~~ 188 (332)
.++
T Consensus 201 ~~~ 203 (309)
T PF01207_consen 201 MLE 203 (309)
T ss_dssp HCC
T ss_pred HHH
Confidence 444
No 218
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.22 E-value=4.4e+02 Score=24.97 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=61.3
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccC-------CCcHHHHHHHHHHcC-CCCeeee
Q 020025 127 LYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVS-------NFACKKLERLLATAK-IPPAVNQ 198 (332)
Q Consensus 127 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~-~~~~~~q 198 (332)
.+-||.|+....+.-.|.+ ....+++.+++.+...+... +.|-+- |-+.++..++++... ++..+|-
T Consensus 215 AiSLHa~nd~lR~~L~Pin----k~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNL 289 (349)
T COG0820 215 AISLHAPNDELRDQLMPIN----KKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNL 289 (349)
T ss_pred EEecCCCCHHHHhhhhccc----cCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEE
Confidence 3678988664332211111 12457888898888776655 444221 234777777777654 5558999
Q ss_pred eecCcccch----------HHHHHHHHHhCceEEEeccCCC
Q 020025 199 VELNPVWQQ----------KKLRDFCEKKGIHITAYSPLGA 229 (332)
Q Consensus 199 ~~~~~~~~~----------~~l~~~~~~~gi~v~a~~~l~~ 229 (332)
++||+.... ....+...++||.+.....-+.
T Consensus 290 IP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 290 IPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred eecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 999997532 2345666778899888777654
No 219
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=22.18 E-value=5.5e+02 Score=22.71 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCcceeccCC-CcHHHHHHHHHHcCCCCeee-eeecCcccchHHHHHHHHHhCceE
Q 020025 158 WEAMEECQNLGLTKSIGVSN-FACKKLERLLATAKIPPAVN-QVELNPVWQQKKLRDFCEKKGIHI 221 (332)
Q Consensus 158 ~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~-q~~~~~~~~~~~l~~~~~~~gi~v 221 (332)
++.+.++++.-.+.-|.... .+++.+.++++..+++-++. ..-+.--..-.++.+.|+++|+.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 34455555554555554443 34677777777654443222 111111112257788888888754
No 220
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=22.14 E-value=3.6e+02 Score=23.09 Aligned_cols=57 Identities=18% Similarity=0.413 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEeCCC--CHHHHHH
Q 020025 208 KKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLRWVYQQG--VSLVVKSF--NKERMKE 283 (332)
Q Consensus 208 ~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~--~~~i~g~~--~~~~l~~ 283 (332)
.+..++.+++++.++.+.+- + .-|=.++|++|++.++ ...+.|+. +.+|.-.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~e-K-----------------------D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~la 105 (203)
T TIGR01378 50 EEELDFYKKAGVKIIVFPPE-K-----------------------DTTDLELALKYALERGADEITILGATGGRLDHTLA 105 (203)
T ss_pred HHHHHHHHHcCCceEEcCCC-C-----------------------CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHH
Confidence 45667777777777664333 2 2356788999999887 56777764 8899999
Q ss_pred hHccc
Q 020025 284 NLDIF 288 (332)
Q Consensus 284 nl~a~ 288 (332)
|+..+
T Consensus 106 ni~~L 110 (203)
T TIGR01378 106 NLNLL 110 (203)
T ss_pred HHHHH
Confidence 98876
No 221
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.02 E-value=4.5e+02 Score=23.53 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=27.2
Q ss_pred ccccccCCCCChHHHHHHHHHHHHhCCCeEecCCCcC--ChHHHHHHHHH
Q 020025 33 FGTAQFPFGAATEAVKESVVHAIEVGYRHFDTAAIYQ--SEEPLGEAIAQ 80 (332)
Q Consensus 33 lG~~~~~~~~~~~~~~~~l~~Ale~Gin~~Dta~~Yg--se~~vG~al~~ 80 (332)
|++...+..+ .+...++++.+.+.|+..|=-++.+| ....+.+.++.
T Consensus 132 ~~~~~~~~~~-~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~ 180 (268)
T cd07940 132 FSAEDATRTD-LDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKK 180 (268)
T ss_pred EeeecCCCCC-HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 5544433344 66677777777777777665555555 33444444443
No 222
>PRK08508 biotin synthase; Provisional
Probab=21.81 E-value=6e+02 Score=22.94 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHcCCccee------ccCCCcHHHHHHHHHHcC-CCCeeeeeecCcccchHHHHHHHHHhCceEEEe
Q 020025 152 LDYEGVWEAMEECQNLGLTKSI------GVSNFACKKLERLLATAK-IPPAVNQVELNPVWQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 152 ~~~~~~~~~L~~l~~~G~ir~i------Gvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 224 (332)
...+++++...++++.|-.+.. |++....+.+.++++... ..|.+. +..+.-....+.+...++.|+.-+..
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~-i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLH-LIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcE-EEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 5689999999999988876542 122223334444433222 111111 11122222467788888888866653
No 223
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.80 E-value=5.7e+02 Score=22.73 Aligned_cols=152 Identities=12% Similarity=0.050 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCC-----------cC---ChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhH
Q 020025 44 TEAVKESVVHAIEVGYRHFDTAAI-----------YQ---SEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLV 109 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~Dta~~-----------Yg---se~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i 109 (332)
.++..++++.-.+.||..++.+.. |. .++.+.+..+. . +..++.+..- +.....
T Consensus 21 ~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~----~---~~~~~~~~~~--~~~~~~--- 88 (263)
T cd07943 21 LEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA----L---KQAKLGVLLL--PGIGTV--- 88 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh----c---cCCEEEEEec--CCccCH---
Confidence 688888999988999999999721 22 23334333222 1 3333332221 111112
Q ss_pred HHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceecc---CCCcHHHHHHH
Q 020025 110 LPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGV---SNFACKKLERL 186 (332)
Q Consensus 110 ~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv---s~~~~~~l~~~ 186 (332)
+.++..++ .|++.+-++.--+ +...+.+.++.+++.|.--.+.+ +.++++.+.++
T Consensus 89 -~~i~~a~~-~g~~~iri~~~~s--------------------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~ 146 (263)
T cd07943 89 -DDLKMAAD-LGVDVVRVATHCT--------------------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQ 146 (263)
T ss_pred -HHHHHHHH-cCCCEEEEEechh--------------------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHH
Confidence 33555443 4666665543111 13466777888888887555544 22455555544
Q ss_pred HHHc-CCCCeeeeee--cCcccch--HHHHHHHHHh----CceEEEeccCCC
Q 020025 187 LATA-KIPPAVNQVE--LNPVWQQ--KKLRDFCEKK----GIHITAYSPLGA 229 (332)
Q Consensus 187 ~~~~-~~~~~~~q~~--~~~~~~~--~~l~~~~~~~----gi~v~a~~~l~~ 229 (332)
.+.. ...+..+.+. +....+. .+++..++++ -+++.++..++.
T Consensus 147 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 147 AKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred HHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcch
Confidence 4432 1222232221 1222222 4556666554 356666666654
No 224
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.80 E-value=5.3e+02 Score=22.36 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHh-----CCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCC-----------------
Q 020025 44 TEAVKESVVHAIEV-----GYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWF----------------- 101 (332)
Q Consensus 44 ~~~~~~~l~~Ale~-----Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~----------------- 101 (332)
+++....+..|++. |+|--=-+..-.++..+...++.+ + .|.-+||=++..+
T Consensus 73 ~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l---~---~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~ 146 (213)
T PF04748_consen 73 EEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL---K---ERGLFFVDSRTTPRSVAPQVAKELGVPAAR 146 (213)
T ss_dssp HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH---H---HTT-EEEE-S--TT-SHHHHHHHCT--EEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH---H---HcCCEEEeCCCCcccHHHHHHHHcCCCEEe
Confidence 78888888998875 444221122222567777777655 2 4666777444421
Q ss_pred ------CCCChhhHHHHHHHHHHhhCCCcccEEeec
Q 020025 102 ------GHAHRQLVLPALQTSLKNLGLEHIDLYLIH 131 (332)
Q Consensus 102 ------~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH 131 (332)
...+.+.|++++++..+.-+..-.=+..-|
T Consensus 147 rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 147 RDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp -SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 134678899999999988876555555556
No 225
>PRK07328 histidinol-phosphatase; Provisional
Probab=21.77 E-value=5.8e+02 Score=22.77 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCcC---------------ChHHHHHHHHHHH--hcCCCCCCCcEEEEeccCCCCCChh
Q 020025 45 EAVKESVVHAIEVGYRHFDTAAIYQ---------------SEEPLGEAIAQAL--RLGLIKSRDELFITSKLWFGHAHRQ 107 (332)
Q Consensus 45 ~~~~~~l~~Ale~Gin~~Dta~~Yg---------------se~~vG~al~~~~--~~g~~~~R~~~~I~tK~~~~~~~~~ 107 (332)
....+.++.|.+.|+..+=.+++.. +..-+-+.+++.- ++.. .+=+|++..-+....
T Consensus 18 ~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y--~~i~Il~GiE~~~~~---- 91 (269)
T PRK07328 18 GTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARF--PDLYVRLGIEADYHP---- 91 (269)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHc--CCCeEEEEEEecccC----
Confidence 3467889999999998653333311 1112222222221 0110 112344444443222
Q ss_pred hHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHcCCcceecc
Q 020025 108 LVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWE----AMEECQNLGLTKSIGV 175 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~L~~l~~~G~ir~iGv 175 (332)
.....+++.|++-..||+ +.-+|+.+...-.. +.....+...+.+++++ .+.++.+.|.+..+|=
T Consensus 92 ~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~--~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 160 (269)
T PRK07328 92 GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDN--PDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGH 160 (269)
T ss_pred CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCC--hhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 234555666777666766 77779864211000 00000011123334443 4777777888777663
No 226
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.76 E-value=7.9e+02 Score=24.31 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCCcce----eccCCCcHHHHHHHHHHc-CCCCeeeeeecCcccchHHHHHHHHHhCc
Q 020025 153 DYEGVWEAMEECQNLGLTKS----IGVSNFACKKLERLLATA-KIPPAVNQVELNPVWQQKKLRDFCEKKGI 219 (332)
Q Consensus 153 ~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~~~l~~~~~~~gi 219 (332)
..++..++++.+++.|..-. +|+-+-+.+.+++.++.. ..++...++..-...+...+.+.+++++.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHHHhhcc
Confidence 46788899999999987433 466677777777666543 24444444322112334667777777653
No 227
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=21.58 E-value=5.6e+02 Score=22.52 Aligned_cols=86 Identities=6% Similarity=0.188 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCC---------CHHHHHHHHHHhCC-CEEEeCCCC
Q 020025 208 KKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGK---------SVAQVSLRWVYQQG-VSLVVKSFN 277 (332)
Q Consensus 208 ~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~---------s~~qlal~~~l~~~-~~~i~g~~~ 277 (332)
+++.+..++.|+..++++.+.. - ........+|++.|+ +..++.-.++ ..| .++|+++..
T Consensus 75 e~l~~~l~~~gv~~vv~GdI~s-~--------~qr~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i-~~G~~aiIv~v~a 144 (223)
T TIGR00290 75 EELKGILHTLDVEAVVFGAIYS-E--------YQKTRIERVCRELGLKSFAPLWHRDPEKLMEEFV-EEKFEARIIAVAA 144 (223)
T ss_pred HHHHHHHHHcCCCEEEECCccc-H--------HHHHHHHHHHHhcCCEEeccccCCCHHHHHHHHH-HcCCeEEEEEEec
Confidence 4555556666766666555543 0 012345666666543 5556555544 667 455555443
Q ss_pred HHHHHHhHcccCCCCCHHHHHHHhccCCC
Q 020025 278 KERMKENLDIFYWELSAEELQKIEQIPQY 306 (332)
Q Consensus 278 ~~~l~~nl~a~~~~L~~e~~~~i~~l~~~ 306 (332)
..|.. .-++..++.+.+++|.++.++
T Consensus 145 -~gL~~--~~LGr~i~~e~i~~L~~~~~~ 170 (223)
T TIGR00290 145 -EGLDE--SWLGRRIDRKMIDELKKLNEK 170 (223)
T ss_pred -CCCCh--HHcCCcccHHHHHHHHHHHhc
Confidence 23432 335668999988888876544
No 228
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.50 E-value=6e+02 Score=22.87 Aligned_cols=121 Identities=10% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCcccEEe---eccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccC----------
Q 020025 110 LPALQTSLKNLGLEHIDLYL---IHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVS---------- 176 (332)
Q Consensus 110 ~~~le~sL~~Lg~d~iDl~~---lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs---------- 176 (332)
+..+-..|.++|+++|++-. ++........+ ..+.++.+.++..+-++..+.-+
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~-------------~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVWGGATFDVCMRFLNED-------------PWERLRELRKAMPNTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred HHHHHHHHHHcCCCEEEccCCcchhhhccccCCC-------------HHHHHHHHHHhCCCCceehhcccccccCccCCC
Q ss_pred -CCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCCCCCCccccchHHHHHHHHH
Q 020025 177 -NFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANA 251 (332)
Q Consensus 177 -~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~ 251 (332)
+.....++.+.+ ..++.+-+-.+.|.+..-.+.+++++++|..+...-.+.. ......+.+.+++++
T Consensus 90 ~~~~~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~-------~~~~~~~~~~~~~~~ 157 (275)
T cd07937 90 DDVVELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTG-------SPVHTLEYYVKLAKE 157 (275)
T ss_pred cHHHHHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecC-------CCCCCHHHHHHHHHH
No 229
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=21.33 E-value=6.2e+02 Score=24.65 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHhCCCeE---ecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhh
Q 020025 44 TEAVKESVVHAIEVGYRHF---DTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNL 120 (332)
Q Consensus 44 ~~~~~~~l~~Ale~Gin~~---Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~L 120 (332)
++-....++.|+++|+..| |.=..-.|-+.-.++.++. | -.....|+--..+ -++- .....+-+-|..+
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~---G---~h~q~~i~YT~sP-vHt~-e~yv~~akel~~~ 168 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKH---G---AHVQGTISYTTSP-VHTL-EYYVELAKELLEM 168 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhc---C---ceeEEEEEeccCC-cccH-HHHHHHHHHHHHc
Confidence 6888899999999999755 4222222445556666654 5 2333333333322 1122 2334455556667
Q ss_pred CCCcc
Q 020025 121 GLEHI 125 (332)
Q Consensus 121 g~d~i 125 (332)
|+|+|
T Consensus 169 g~DSI 173 (472)
T COG5016 169 GVDSI 173 (472)
T ss_pred CCCEE
Confidence 76443
No 230
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=21.20 E-value=3.7e+02 Score=25.85 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCc--c-eeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEe
Q 020025 157 VWEAMEECQNLGLT--K-SIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAY 224 (332)
Q Consensus 157 ~~~~L~~l~~~G~i--r-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~ 224 (332)
-++.+.+|++.-.+ . .-|-+.++...+..+++...+ +++|....-+ ..-..+.+.|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~--Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCI--DIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCC--CEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46666677666432 1 236666777777777775443 3666654432 22256777788888876553
No 231
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.20 E-value=4.3e+02 Score=21.00 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHH-HhCCCeEecCCCcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCC
Q 020025 44 TEAVKESVVHAI-EVGYRHFDTAAIYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGL 122 (332)
Q Consensus 44 ~~~~~~~l~~Al-e~Gin~~Dta~~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~ 122 (332)
.+....++..++ .+|+..+|+...=..|+++-.+.+ ..-+++..+-. ..+.....+.+-+.|+..|.
T Consensus 15 Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e---------~~adii~iSsl---~~~~~~~~~~~~~~L~~~g~ 82 (132)
T TIGR00640 15 HDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE---------ADVHVVGVSSL---AGGHLTLVPALRKELDKLGR 82 (132)
T ss_pred cHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH---------cCCCEEEEcCc---hhhhHHHHHHHHHHHHhcCC
Confidence 567778888888 568999998765445666665554 34445544433 22234455666666777776
Q ss_pred CcccE-EeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHHH
Q 020025 123 EHIDL-YLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLERL 186 (332)
Q Consensus 123 d~iDl-~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 186 (332)
+ |+ +++.... ..+ ..++|++.|.-++|+..+.-.+.+..+
T Consensus 83 ~--~i~vivGG~~-------------------~~~---~~~~l~~~Gvd~~~~~gt~~~~i~~~l 123 (132)
T TIGR00640 83 P--DILVVVGGVI-------------------PPQ---DFDELKEMGVAEIFGPGTPIPESAIFL 123 (132)
T ss_pred C--CCEEEEeCCC-------------------ChH---hHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 4 43 4444321 111 134689999999999988444444443
No 232
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=21.17 E-value=4e+02 Score=20.74 Aligned_cols=62 Identities=6% Similarity=0.010 Sum_probs=44.3
Q ss_pred CCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCC------cccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 020025 90 RDELFITSKLWFGHAHRQLVLPALQTSLKNLGLE------HIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEE 163 (332)
Q Consensus 90 R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 163 (332)
|=.+.|+-|++.....+..+++.+.++++....+ -.|++++-.+... ..+..++.+.|..
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~--------------~~~~~~l~~~l~~ 112 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFE--------------EINFSHLNYELSK 112 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcc--------------cCCHHHHHHHHHH
Confidence 6678888887666667889999999999887642 4789999877432 2345666666665
Q ss_pred HH
Q 020025 164 CQ 165 (332)
Q Consensus 164 l~ 165 (332)
|.
T Consensus 113 l~ 114 (118)
T PRK01492 113 II 114 (118)
T ss_pred HH
Confidence 43
No 233
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.11 E-value=5.4e+02 Score=24.25 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHcC--C--cceeccCC--CcHHHHHHHHHHcC-CCCeeeeeecCcccch----------HHHHHHH
Q 020025 152 LDYEGVWEAMEECQNLG--L--TKSIGVSN--FACKKLERLLATAK-IPPAVNQVELNPVWQQ----------KKLRDFC 214 (332)
Q Consensus 152 ~~~~~~~~~L~~l~~~G--~--ir~iGvs~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~~~ 214 (332)
..++++++++.+....+ + ++|+=+.. -+.+++.++.+... ++..++-++||+.... ..+.+..
T Consensus 231 ~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L 310 (349)
T PRK14463 231 YPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYL 310 (349)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34778888888877654 2 34554443 34577777766543 4556777888886321 3456668
Q ss_pred HHhCceEEEeccCCC
Q 020025 215 EKKGIHITAYSPLGA 229 (332)
Q Consensus 215 ~~~gi~v~a~~~l~~ 229 (332)
+++||.+......|.
T Consensus 311 ~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 311 LDKHVTVITRSSRGS 325 (349)
T ss_pred HHCCceEEEeCCCCc
Confidence 889999999887765
No 234
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.10 E-value=4.7e+02 Score=25.16 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=46.5
Q ss_pred cchHHHHHHHH-HhCceEEEeccCCCCCCCCCCccccchHHHHHHHHHcCC------CHHHHHHH---------------
Q 020025 205 WQQKKLRDFCE-KKGIHITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGK------SVAQVSLR--------------- 262 (332)
Q Consensus 205 ~~~~~l~~~~~-~~gi~v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~------s~~qlal~--------------- 262 (332)
.||+.+.+++. +-++-++.-+.-. -.-..|.++|++.+. ++.++...
T Consensus 276 ~RQ~A~~~La~~~vD~miVVGG~nS-----------SNT~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t 344 (387)
T PRK13371 276 ERQDAMFSLVEEPLDLMVVIGGYNS-----------SNTTHLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVT 344 (387)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC-----------ccHHHHHHHHHhcCCCEEEECCHHHcCCccccccccccchhhhh
Confidence 34567777775 5676666532222 234688999998874 67888775
Q ss_pred --HHHhCC--CEEEeCCCCHHHHHHh
Q 020025 263 --WVYQQG--VSLVVKSFNKERMKEN 284 (332)
Q Consensus 263 --~~l~~~--~~~i~g~~~~~~l~~n 284 (332)
|..... +.+..|+|+|+.+-+.
T Consensus 345 ~~wl~~~~~~VGITAGASTP~~lI~e 370 (387)
T PRK13371 345 ENWLPEGPVTVGITSGASTPDKVVED 370 (387)
T ss_pred hhhhccCCCEEEEecCCCCCHHHHHH
Confidence 876433 7788999999876554
No 235
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.08 E-value=7.6e+02 Score=23.85 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=62.3
Q ss_pred CcCChHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCC
Q 020025 67 IYQSEEPLGEAIAQALRLGLIKSRDELFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSK 146 (332)
Q Consensus 67 ~Ygse~~vG~al~~~~~~g~~~~R~~~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 146 (332)
.||.+.-+-++|++..+.- +.+-++|.|-+.+.-. -+.+..-+++. ++.+ ++++.++.|.....
T Consensus 67 V~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~~I-GdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~-------- 130 (427)
T cd01971 67 VFGGEDRLRELIKSTLSII---DADLFVVLTGCIAEII-GDDVGAVVSEF-QEGG---APIVYLETGGFKGN-------- 130 (427)
T ss_pred EeCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHHHh-hcCHHHHHHHh-hhcC---CCEEEEECCCcCcc--------
Confidence 4677778888887764432 4556777776643211 12233333333 3443 78999998865432
Q ss_pred CCCCCCCHHHHHHHHHH-HH------HcCCcceeccCC-------CcHHHHHHHHHHcCCCCee
Q 020025 147 EDIEPLDYEGVWEAMEE-CQ------NLGLTKSIGVSN-------FACKKLERLLATAKIPPAV 196 (332)
Q Consensus 147 ~~~~~~~~~~~~~~L~~-l~------~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~~ 196 (332)
. ....+.++++|-+ +. +++.|.-||..+ -+..++.++++..++.+.+
T Consensus 131 -~--~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 131 -N--YAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred -c--ccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 0 1123334444443 22 235688888642 2457788888877766433
No 236
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.94 E-value=7.4e+02 Score=23.69 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCCcEEEEeccCC---------------CCCChhhHHHHHHHHHHhhCC-------------CcccEEeeccCCCCCCCC
Q 020025 89 SRDELFITSKLWF---------------GHAHRQLVLPALQTSLKNLGL-------------EHIDLYLIHFPVSLKPGT 140 (332)
Q Consensus 89 ~R~~~~I~tK~~~---------------~~~~~~~i~~~le~sL~~Lg~-------------d~iDl~~lH~p~~~~~~~ 140 (332)
.|..+.|+|.++. ++.+...|..|+....+.|+. ..+.-+.+-.... |
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGE--P-- 180 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGE--P-- 180 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCC--c--
Confidence 4777888888754 355788999999887766632 2244444333311 1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCC----cceeccCCCc-HHHHHHHHH
Q 020025 141 GFPFSKEDIEPLDYEGVWEAMEECQNLGL----TKSIGVSNFA-CKKLERLLA 188 (332)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~-~~~l~~~~~ 188 (332)
-...+.++++++.|.+..- -|.|-||+.. ...+.++.+
T Consensus 181 ----------L~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~ 223 (371)
T PRK14461 181 ----------FANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLAN 223 (371)
T ss_pred ----------hhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHh
Confidence 1236789999999987632 3567777766 345666655
No 237
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=20.77 E-value=7.1e+02 Score=23.43 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHhC---CCeEecCCCcCC-hHHHHHHHHHHHhcCCCCCCCcEEEEeccC--CCCCChhhHHHHHHHHH
Q 020025 44 TEAVKESVVHAIEVG---YRHFDTAAIYQS-EEPLGEAIAQALRLGLIKSRDELFITSKLW--FGHAHRQLVLPALQTSL 117 (332)
Q Consensus 44 ~~~~~~~l~~Ale~G---in~~Dta~~Ygs-e~~vG~al~~~~~~g~~~~R~~~~I~tK~~--~~~~~~~~i~~~le~sL 117 (332)
.++..+++....+.- +-.+|..+..++ ...+-+.+ + ...-++|.+|+- +.....+.+.+.+.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~------~---~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV------G---GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh------C---CCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 455666555544321 236676555442 11122221 2 455678999984 23334456666666667
Q ss_pred HhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHHHHH
Q 020025 118 KNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKKLER 185 (332)
Q Consensus 118 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~ 185 (332)
+..|....+++.+-.-. ...++++++.|.++.+.+.|-.+|.+|..-..+..
T Consensus 121 k~~g~~~~~i~~vSAk~----------------g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN 172 (360)
T TIGR03597 121 KELGLKPVDIILVSAKK----------------GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLIN 172 (360)
T ss_pred HHcCCCcCcEEEecCCC----------------CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH
Confidence 77776544666543321 23478889999888777789999999988655433
No 238
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=20.73 E-value=3.4e+02 Score=19.73 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCcceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEec
Q 020025 157 VWEAMEECQNLGLTKSIGVSNFACKKLERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 157 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 225 (332)
+...|...++.|++. + ...+..+.++......++.--+.++......+..+|++++|.++-..
T Consensus 3 i~~~l~~a~~~~~lv-~-----G~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 3 IYKLLKLARKAGRLV-K-----GIKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHSEEE-E-----SHHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred HHHHHHHHHhcCCEE-E-----chHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 445566666677643 3 34566777776666555554455543333447889999999997644
No 239
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.72 E-value=4.5e+02 Score=21.07 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=34.1
Q ss_pred CCcceeccCCCcHHHH----HHHHHHcCCCCeeeeeecCcccch----------HHHHHHHHHhCceEEEecc
Q 020025 168 GLTKSIGVSNFACKKL----ERLLATAKIPPAVNQVELNPVWQQ----------KKLRDFCEKKGIHITAYSP 226 (332)
Q Consensus 168 G~ir~iGvs~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~~ 226 (332)
=.+...|++..+...+ ...+.....+.+++++--|-.... ..+++.+++++..++..++
T Consensus 37 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 37 VTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred eEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3467778888765443 333333334444555544432111 4678888888888777654
No 240
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.40 E-value=8.1e+02 Score=23.94 Aligned_cols=128 Identities=13% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceeccCC-----Cc--HHHHHHHHHHc-CCCCeeeeeec---CcccchHHHHHHHHHh
Q 020025 149 IEPLDYEGVWEAMEECQNLGLTKSIGVSN-----FA--CKKLERLLATA-KIPPAVNQVEL---NPVWQQKKLRDFCEKK 217 (332)
Q Consensus 149 ~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~--~~~l~~~~~~~-~~~~~~~q~~~---~~~~~~~~l~~~~~~~ 217 (332)
.....++++++.++.|++.| ++.|-+.. +. ...+.++++.. ... ....+.+ ++..-..++++..++.
T Consensus 180 ~rsr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~-~~~~ir~~~~~p~~~~~ell~~m~~~ 257 (449)
T PRK14332 180 ERSRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDET-TIERIRFTSPHPKDFPDHLLSLMAKN 257 (449)
T ss_pred cccCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcCC-CcceEEEECCCcccCCHHHHHHHHhC
Confidence 45667899999999999987 67774432 21 11233343321 111 1112222 3333346889998887
Q ss_pred Cce-EEEeccCCCCCCCCCCccccchHHHHHHHHHcCCCHHHHHHHHHHhC-C-----CEEEeCC--CCHHHHHHhHccc
Q 020025 218 GIH-ITAYSPLGAKGTIWGTNRVMECQMLKEIANAKGKSVAQVSLRWVYQQ-G-----VSLVVKS--FNKERMKENLDIF 288 (332)
Q Consensus 218 gi~-v~a~~~l~~~G~l~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~-~-----~~~i~g~--~~~~~l~~nl~a~ 288 (332)
+-. -..+-|+-+ | ..+.|+.+.+.+...-..-+++++... | ...|+|. .+.+++++.++.+
T Consensus 258 ~~~~~~l~lgvQS-g---------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v 327 (449)
T PRK14332 258 PRFCPNIHLPLQA-G---------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVV 327 (449)
T ss_pred CCccceEEECCCc-C---------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 631 122233333 2 234455554444333333455566553 2 3467884 5777777776653
No 241
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.27 E-value=4.2e+02 Score=24.71 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCc-ceeccCCCcHHHHHHHHHHcCCCCeeeeeecCcc---cchHHHHHHHHHhCceEEEeccC
Q 020025 157 VWEAMEECQNLGLT-KSIGVSNFACKKLERLLATAKIPPAVNQVELNPV---WQQKKLRDFCEKKGIHITAYSPL 227 (332)
Q Consensus 157 ~~~~L~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi~v~a~~~l 227 (332)
-+..+.++++.-.+ -+.|=|.++...+..+++...++ ++|+....+ ..-..+...|+.+|+.++..+..
T Consensus 216 d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 216 DLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACK--IINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCC--EEEecccccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 36667777665433 35677778888888888765544 666654432 23367888899999988765444
No 242
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.14 E-value=3.8e+02 Score=20.03 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=54.9
Q ss_pred HHHHHHHc-CCcceeccCCCcHHHHHHHHHHcCCC-------------CeeeeeecCcccchHHHHHHHHHhCceEEEec
Q 020025 160 AMEECQNL-GLTKSIGVSNFACKKLERLLATAKIP-------------PAVNQVELNPVWQQKKLRDFCEKKGIHITAYS 225 (332)
Q Consensus 160 ~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~-------------~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 225 (332)
.+..+.+. ..+.-+|+++-+++..+.+.+..+++ ++++-+ ..+...+.+++..|-++|+.++.=.
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I-~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVII-ATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEE-ESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEE-ecCCcchHHHHHHHHHcCCEEEEEc
Confidence 34455555 66777888888877766654443322 112211 1222334688999999999999999
Q ss_pred cCCCCCCCCCCccccchHHHHHHHHHcCC
Q 020025 226 PLGAKGTIWGTNRVMECQMLKEIANAKGK 254 (332)
Q Consensus 226 ~l~~~G~l~~~~~~~~~~~l~~la~~~~~ 254 (332)
|++. ......++.++++++|.
T Consensus 94 P~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 94 PLAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSSS--------SHHHHHHHHHHHHHHTS
T ss_pred CCcC--------CHHHHHHHHHHHHHhCC
Confidence 9986 23445677777777764
No 243
>PRK14851 hypothetical protein; Provisional
Probab=20.11 E-value=6.7e+02 Score=26.13 Aligned_cols=117 Identities=10% Similarity=0.091 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhhCCCccc-----EEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceeccCCCcHHH
Q 020025 108 LVLPALQTSLKNLGLEHID-----LYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKSIGVSNFACKK 182 (332)
Q Consensus 108 ~i~~~le~sL~~Lg~d~iD-----l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 182 (332)
.+-..+-..|-++|+..+- .+-+++.++. +.+...++-....+-+-+.+.++--.-+|..+- ...+.+.
T Consensus 53 GlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ-----~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~-~~i~~~n 126 (679)
T PRK14851 53 GVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQ-----FGARVPSFGRPKLAVMKEQALSINPFLEITPFP-AGINADN 126 (679)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCEecccccccC-----cCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe-cCCChHH
Confidence 4666677889999987653 3444443221 111112221111222334444444445555542 1234556
Q ss_pred HHHHHHHcCCCCeeeeeecCcccchHHHHHHHHHhCceEEEeccCCCCCC
Q 020025 183 LERLLATAKIPPAVNQVELNPVWQQKKLRDFCEKKGIHITAYSPLGAKGT 232 (332)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~~l~~~G~ 232 (332)
+.++++ ++++++.-.....+.....+.+.|++++|.++.-++.+..|.
T Consensus 127 ~~~~l~--~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~ 174 (679)
T PRK14851 127 MDAFLD--GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSA 174 (679)
T ss_pred HHHHHh--CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccce
Confidence 666665 344444333221122234678899999999999888876443
No 244
>PRK13561 putative diguanylate cyclase; Provisional
Probab=20.08 E-value=7.6e+02 Score=25.11 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=70.2
Q ss_pred EEEEeccCCCCCChhhHHHHHHHHHHhhCCCcccEEeeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcce
Q 020025 93 LFITSKLWFGHAHRQLVLPALQTSLKNLGLEHIDLYLIHFPVSLKPGTGFPFSKEDIEPLDYEGVWEAMEECQNLGLTKS 172 (332)
Q Consensus 93 ~~I~tK~~~~~~~~~~i~~~le~sL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 172 (332)
+.|+-.+.........+...+.+.|++.+.+ ..-+.+--+.... ..+.+.+...+.+|++.|- .
T Consensus 486 ~~~~iNlS~~~l~~~~f~~~l~~~l~~~~~~-~~~l~lEi~E~~~-------------~~~~~~~~~~~~~l~~~G~--~ 549 (651)
T PRK13561 486 LPLSVNLSALQLMHPNMVADMLELLTRYRIQ-PGTLILEVTESRR-------------IDDPHAAVAILRPLRNAGV--R 549 (651)
T ss_pred ceEEEECCHHHHCCchHHHHHHHHHHHcCCC-hHHEEEEEchhhh-------------hcCHHHHHHHHHHHHHCCC--E
Confidence 3455555443333456788899999888865 3334444332111 1236788899999999998 6
Q ss_pred eccCCCcH--HHHHHHHHHcCCCCeeeeeecCcccc----h---HHHHHHHHHhCceEEEe
Q 020025 173 IGVSNFAC--KKLERLLATAKIPPAVNQVELNPVWQ----Q---KKLRDFCEKKGIHITAY 224 (332)
Q Consensus 173 iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~----~---~~l~~~~~~~gi~v~a~ 224 (332)
|++.+|.. ..+..+......+++++-+.-+.... + +.++..|+..|+.++|-
T Consensus 550 i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 550 VALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred EEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 77777663 33444433334455555544322211 1 56789999999999983
Done!