BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020026
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 30.8 bits (68), Expect = 0.99, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 139 NRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 185
NR +A+RS++++ ++ LE+K + L + L +++TL + + L
Sbjct: 9 NRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 196 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 236
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 SQSEVQYRIPDDMDLVSDPISDPLFDGPGGSEDDLFCSYMD 63
+ E ++P D L+SDP+ PL D ED F Y +
Sbjct: 208 GEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAE 248
>pdb|3UUM|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
pdb|3UUM|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
Length = 123
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 23/27 (85%)
Query: 194 LRLQAMEQQAQLRDALNEALKKEVERL 220
LR+++ME+Q++L DAL E KK++++L
Sbjct: 97 LRVESMERQSRLHDALMELQKKQLQQL 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,847,629
Number of Sequences: 62578
Number of extensions: 347243
Number of successful extensions: 599
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 29
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)