Query 020026
Match_columns 332
No_of_seqs 220 out of 738
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:25:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 1.5E-12 3.3E-17 98.4 9.6 62 127-189 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.6E-11 3.4E-16 92.7 9.4 61 128-189 3-63 (64)
3 PF07716 bZIP_2: Basic region 99.1 5.6E-10 1.2E-14 82.2 8.4 52 127-180 2-53 (54)
4 KOG4005 Transcription factor X 99.0 4.2E-09 9.1E-14 99.6 12.6 75 127-202 66-140 (292)
5 KOG4343 bZIP transcription fac 99.0 7.4E-10 1.6E-14 113.6 7.2 64 130-194 281-344 (655)
6 KOG3584 cAMP response element 98.8 1E-08 2.2E-13 99.3 6.7 53 129-182 290-342 (348)
7 KOG0709 CREB/ATF family transc 98.8 9.8E-09 2.1E-13 103.9 6.6 63 129-192 250-312 (472)
8 KOG0837 Transcriptional activa 98.0 1.8E-05 3.9E-10 76.0 7.6 53 129-181 204-256 (279)
9 PF03131 bZIP_Maf: bZIP Maf tr 97.9 1.8E-07 3.8E-12 75.7 -6.6 70 114-189 19-88 (92)
10 KOG4571 Activating transcripti 97.4 0.00092 2E-08 65.1 9.1 58 125-182 221-278 (294)
11 KOG3119 Basic region leucine z 96.7 0.0097 2.1E-07 57.0 9.3 53 131-183 194-246 (269)
12 KOG4196 bZIP transcription fac 96.7 0.016 3.4E-07 51.1 9.6 48 129-177 52-99 (135)
13 KOG3863 bZIP transcription fac 96.4 0.007 1.5E-07 64.0 6.6 63 132-202 492-554 (604)
14 PF06005 DUF904: Protein of un 96.3 0.083 1.8E-06 41.9 11.0 51 152-202 4-54 (72)
15 PF11559 ADIP: Afadin- and alp 96.3 0.29 6.4E-06 42.3 15.0 52 135-186 49-100 (151)
16 PF06156 DUF972: Protein of un 95.8 0.048 1E-06 46.1 7.9 50 152-201 8-57 (107)
17 PRK13169 DNA replication intia 95.7 0.051 1.1E-06 46.4 7.5 50 152-201 8-57 (110)
18 PF14197 Cep57_CLD_2: Centroso 95.2 0.41 8.9E-06 37.6 10.5 65 156-221 2-67 (69)
19 PRK10884 SH3 domain-containing 94.4 0.59 1.3E-05 43.6 11.3 21 182-202 134-154 (206)
20 KOG4005 Transcription factor X 94.3 0.95 2.1E-05 44.0 12.7 82 125-206 68-151 (292)
21 PF10224 DUF2205: Predicted co 94.3 0.31 6.6E-06 39.6 8.0 49 154-202 18-66 (80)
22 PF14662 CCDC155: Coiled-coil 94.3 0.43 9.3E-06 44.5 10.1 69 153-225 9-77 (193)
23 TIGR02449 conserved hypothetic 93.9 0.46 1E-05 37.3 8.0 46 154-199 9-54 (65)
24 PF14197 Cep57_CLD_2: Centroso 93.4 0.93 2E-05 35.7 9.0 61 163-223 2-62 (69)
25 COG1579 Zn-ribbon protein, pos 93.3 5.1 0.00011 38.5 15.6 44 135-178 35-78 (239)
26 PF10146 zf-C4H2: Zinc finger- 93.2 5.5 0.00012 37.9 15.5 85 146-230 26-111 (230)
27 PF08614 ATG16: Autophagy prot 93.1 2 4.4E-05 38.8 12.1 50 147-196 132-181 (194)
28 COG4467 Regulator of replicati 92.9 0.39 8.5E-06 41.4 6.7 46 153-198 9-54 (114)
29 PF04102 SlyX: SlyX; InterPro 92.7 0.59 1.3E-05 36.3 7.0 49 152-200 4-52 (69)
30 PF10473 CENP-F_leu_zip: Leuci 92.6 7.2 0.00016 34.7 15.1 68 135-202 35-102 (140)
31 PF05911 DUF869: Plant protein 92.6 1.9 4.1E-05 47.5 13.0 17 209-225 191-207 (769)
32 TIGR02894 DNA_bind_RsfA transc 92.5 1.6 3.4E-05 39.9 10.4 51 152-202 87-140 (161)
33 PRK00295 hypothetical protein; 92.2 1.1 2.4E-05 35.0 8.0 46 153-198 6-51 (68)
34 PF05266 DUF724: Protein of un 92.0 7.7 0.00017 35.8 14.5 68 126-194 85-152 (190)
35 PRK00736 hypothetical protein; 91.9 1.1 2.4E-05 34.9 7.7 45 152-196 5-49 (68)
36 PRK02793 phi X174 lysis protei 91.9 1.1 2.3E-05 35.4 7.6 45 152-196 8-52 (72)
37 PF14662 CCDC155: Coiled-coil 91.9 4.4 9.5E-05 38.0 12.8 45 155-199 98-142 (193)
38 PRK04325 hypothetical protein; 91.8 1.1 2.4E-05 35.5 7.6 42 153-194 10-51 (74)
39 PF11559 ADIP: Afadin- and alp 91.6 8.4 0.00018 33.3 15.3 90 135-224 35-124 (151)
40 TIGR02449 conserved hypothetic 91.5 2.8 6E-05 33.0 9.4 44 154-197 2-45 (65)
41 PRK02119 hypothetical protein; 91.5 1.2 2.6E-05 35.2 7.6 43 152-194 9-51 (73)
42 PF04111 APG6: Autophagy prote 91.5 7.1 0.00015 38.4 14.5 81 144-224 56-136 (314)
43 COG2433 Uncharacterized conser 91.4 2 4.3E-05 46.2 11.3 44 153-196 423-466 (652)
44 PF13747 DUF4164: Domain of un 91.4 3.7 7.9E-05 33.6 10.5 69 130-199 11-79 (89)
45 PRK11637 AmiB activator; Provi 91.3 5.6 0.00012 40.0 13.9 35 136-170 182-216 (428)
46 COG3074 Uncharacterized protei 91.3 5.2 0.00011 32.4 10.9 24 153-176 5-28 (79)
47 PF06005 DUF904: Protein of un 91.3 1.5 3.2E-05 34.8 7.9 38 157-194 16-53 (72)
48 TIGR03752 conj_TIGR03752 integ 91.3 1.3 2.9E-05 46.2 9.6 49 154-202 75-124 (472)
49 PRK13729 conjugal transfer pil 91.2 1.1 2.4E-05 46.8 9.0 44 153-196 77-120 (475)
50 PRK04406 hypothetical protein; 91.2 1.3 2.9E-05 35.3 7.6 38 153-190 12-49 (75)
51 PF10186 Atg14: UV radiation r 91.1 12 0.00027 34.4 15.2 43 150-192 61-103 (302)
52 PRK11637 AmiB activator; Provi 91.1 7.8 0.00017 38.9 14.7 13 302-314 328-341 (428)
53 PRK15422 septal ring assembly 90.7 5.1 0.00011 32.8 10.5 42 152-193 4-45 (79)
54 PRK10884 SH3 domain-containing 90.2 6.6 0.00014 36.7 12.4 40 153-192 126-165 (206)
55 PF08614 ATG16: Autophagy prot 90.2 4.4 9.6E-05 36.7 11.0 44 159-202 130-173 (194)
56 PRK00846 hypothetical protein; 90.1 2.1 4.4E-05 34.7 7.8 48 152-199 13-60 (77)
57 PF10805 DUF2730: Protein of u 89.7 3.7 8.1E-05 34.3 9.4 50 155-204 45-96 (106)
58 PF15070 GOLGA2L5: Putative go 89.7 10 0.00022 40.8 14.9 66 136-201 106-195 (617)
59 PF12325 TMF_TATA_bd: TATA ele 89.7 11 0.00025 32.5 12.5 33 157-189 28-60 (120)
60 COG4942 Membrane-bound metallo 89.5 9 0.00019 39.7 13.7 73 130-203 38-110 (420)
61 PRK09039 hypothetical protein; 88.5 18 0.00038 36.0 14.7 44 158-201 122-165 (343)
62 PF11932 DUF3450: Protein of u 88.5 21 0.00047 33.4 14.9 45 156-200 53-97 (251)
63 PRK04863 mukB cell division pr 88.4 15 0.00032 43.5 16.0 94 130-224 321-427 (1486)
64 COG3074 Uncharacterized protei 88.2 2.6 5.7E-05 34.1 7.0 43 153-195 19-61 (79)
65 PF10481 CENP-F_N: Cenp-F N-te 88.2 8.1 0.00018 38.3 11.8 75 149-223 50-124 (307)
66 PF12711 Kinesin-relat_1: Kine 88.1 9.3 0.0002 31.6 10.4 61 160-223 25-85 (86)
67 PRK09039 hypothetical protein; 88.1 13 0.00029 36.8 13.6 46 155-200 133-178 (343)
68 PF07989 Microtub_assoc: Micro 87.9 9.2 0.0002 30.5 10.0 51 154-204 2-60 (75)
69 KOG1414 Transcriptional activa 87.9 0.022 4.7E-07 57.1 -6.0 54 126-180 150-207 (395)
70 PF07888 CALCOCO1: Calcium bin 87.9 6.6 0.00014 41.9 11.8 64 135-198 154-217 (546)
71 KOG0982 Centrosomal protein Nu 87.6 10 0.00023 39.7 12.7 80 152-231 297-397 (502)
72 PF12718 Tropomyosin_1: Tropom 87.5 10 0.00022 33.4 11.0 51 152-202 35-88 (143)
73 PF11932 DUF3450: Protein of u 87.3 26 0.00056 32.8 14.7 43 150-192 54-96 (251)
74 KOG3650 Predicted coiled-coil 87.3 2.9 6.3E-05 35.9 7.2 45 157-201 61-105 (120)
75 KOG0288 WD40 repeat protein Ti 87.1 17 0.00037 37.9 13.8 75 129-204 26-105 (459)
76 PF08317 Spc7: Spc7 kinetochor 87.0 14 0.0003 36.1 12.8 76 152-227 209-295 (325)
77 COG1579 Zn-ribbon protein, pos 86.9 14 0.0003 35.7 12.4 52 151-202 88-139 (239)
78 PF02403 Seryl_tRNA_N: Seryl-t 86.9 5.4 0.00012 32.5 8.5 47 157-203 41-90 (108)
79 PF09726 Macoilin: Transmembra 86.9 13 0.00027 40.7 13.5 34 144-177 480-513 (697)
80 PF10473 CENP-F_leu_zip: Leuci 86.7 23 0.00049 31.6 14.9 39 164-202 57-95 (140)
81 KOG0239 Kinesin (KAR3 subfamil 86.4 12 0.00026 40.7 12.9 73 152-224 241-316 (670)
82 KOG4807 F-actin binding protei 86.3 17 0.00036 38.1 13.3 93 132-224 371-490 (593)
83 PF09726 Macoilin: Transmembra 86.3 13 0.00028 40.6 13.2 40 155-194 541-580 (697)
84 PF00038 Filament: Intermediat 86.0 32 0.00069 32.6 15.1 39 163-201 213-251 (312)
85 KOG1414 Transcriptional activa 86.0 0.12 2.7E-06 51.8 -1.9 44 128-172 283-326 (395)
86 PF07888 CALCOCO1: Calcium bin 85.9 24 0.00052 37.8 14.6 43 155-197 188-230 (546)
87 PF07106 TBPIP: Tat binding pr 85.8 4.1 9E-05 35.9 7.8 51 152-202 86-138 (169)
88 PF09730 BicD: Microtubule-ass 85.8 18 0.00038 39.9 13.9 42 155-196 72-113 (717)
89 PF08232 Striatin: Striatin fa 85.7 7.4 0.00016 33.9 9.2 54 171-224 9-62 (134)
90 PF04111 APG6: Autophagy prote 85.5 14 0.00029 36.4 11.9 52 151-202 42-93 (314)
91 PF02183 HALZ: Homeobox associ 85.5 2.9 6.3E-05 30.5 5.5 36 164-199 3-38 (45)
92 KOG0243 Kinesin-like protein [ 85.5 14 0.00031 42.1 13.3 50 150-199 446-495 (1041)
93 PF12325 TMF_TATA_bd: TATA ele 85.4 23 0.00051 30.6 12.0 46 156-201 34-82 (120)
94 PF05837 CENP-H: Centromere pr 85.4 7.5 0.00016 32.5 8.7 43 160-202 4-46 (106)
95 TIGR02169 SMC_prok_A chromosom 85.2 30 0.00066 37.9 15.5 6 216-221 491-496 (1164)
96 KOG1899 LAR transmembrane tyro 85.1 11 0.00023 41.4 11.6 66 135-202 128-196 (861)
97 PF09304 Cortex-I_coil: Cortex 85.0 15 0.00032 31.7 10.4 51 146-196 24-74 (107)
98 PF04880 NUDE_C: NUDE protein, 84.9 1.5 3.3E-05 40.0 4.7 52 154-209 2-53 (166)
99 COG4026 Uncharacterized protei 84.7 12 0.00026 36.5 10.7 46 154-199 137-189 (290)
100 PF08317 Spc7: Spc7 kinetochor 84.6 33 0.00071 33.6 14.1 21 179-199 215-235 (325)
101 PF03962 Mnd1: Mnd1 family; I 84.6 22 0.00048 32.6 12.1 21 209-229 136-156 (188)
102 PF02403 Seryl_tRNA_N: Seryl-t 84.6 20 0.00044 29.1 11.7 84 138-221 9-101 (108)
103 KOG0977 Nuclear envelope prote 84.6 25 0.00053 37.7 13.9 49 152-200 141-189 (546)
104 PRK15422 septal ring assembly 84.3 11 0.00023 31.0 8.8 36 163-198 8-43 (79)
105 PF15035 Rootletin: Ciliary ro 84.0 18 0.00039 33.2 11.2 24 152-175 16-39 (182)
106 PF05266 DUF724: Protein of un 83.9 26 0.00057 32.4 12.4 43 144-186 109-151 (190)
107 KOG0250 DNA repair protein RAD 83.8 28 0.0006 40.0 14.5 59 141-199 368-427 (1074)
108 KOG0995 Centromere-associated 83.7 33 0.00071 37.1 14.4 57 140-196 267-324 (581)
109 PHA02562 46 endonuclease subun 83.5 38 0.00082 34.5 14.5 41 154-194 360-400 (562)
110 PF06156 DUF972: Protein of un 83.2 8.2 0.00018 32.8 8.1 41 156-196 5-45 (107)
111 KOG1962 B-cell receptor-associ 83.2 21 0.00045 34.1 11.6 61 157-224 149-209 (216)
112 PRK10698 phage shock protein P 83.0 19 0.0004 33.8 11.2 58 151-208 98-155 (222)
113 KOG0971 Microtubule-associated 82.7 16 0.00035 41.5 12.1 85 140-224 398-506 (1243)
114 KOG1029 Endocytic adaptor prot 82.7 14 0.0003 41.5 11.4 10 111-120 331-340 (1118)
115 COG4026 Uncharacterized protei 82.4 16 0.00034 35.7 10.5 49 154-202 158-206 (290)
116 PF12777 MT: Microtubule-bindi 82.4 8.3 0.00018 38.0 9.0 62 155-216 231-292 (344)
117 PF08581 Tup_N: Tup N-terminal 82.3 25 0.00054 28.5 12.4 70 152-224 4-73 (79)
118 PF10805 DUF2730: Protein of u 82.1 20 0.00043 30.0 9.9 63 151-213 34-98 (106)
119 PF08647 BRE1: BRE1 E3 ubiquit 82.0 27 0.00058 28.6 13.3 73 135-207 7-80 (96)
120 COG2433 Uncharacterized conser 81.9 19 0.00042 39.1 11.9 84 138-221 421-508 (652)
121 PRK05431 seryl-tRNA synthetase 81.6 22 0.00048 36.3 12.0 38 184-228 70-107 (425)
122 TIGR02977 phageshock_pspA phag 81.3 25 0.00053 32.5 11.2 59 150-208 97-155 (219)
123 PF09744 Jnk-SapK_ap_N: JNK_SA 80.9 36 0.00078 30.8 11.8 35 162-196 85-119 (158)
124 PF04728 LPP: Lipoprotein leuc 80.8 17 0.00037 28.0 8.2 46 153-198 4-49 (56)
125 KOG4643 Uncharacterized coiled 80.4 9.7 0.00021 43.4 9.5 77 151-227 263-341 (1195)
126 PF10211 Ax_dynein_light: Axon 80.3 39 0.00084 31.0 12.0 39 154-192 122-160 (189)
127 KOG2391 Vacuolar sorting prote 80.2 49 0.0011 33.9 13.5 18 56-73 130-147 (365)
128 PF10211 Ax_dynein_light: Axon 80.1 48 0.001 30.4 13.1 54 170-223 124-178 (189)
129 TIGR00219 mreC rod shape-deter 80.1 4.5 9.9E-05 39.1 6.2 15 213-227 96-110 (283)
130 PRK13922 rod shape-determining 79.9 14 0.0003 34.8 9.3 43 181-227 70-112 (276)
131 PF10212 TTKRSYEDQ: Predicted 79.7 16 0.00035 38.8 10.4 36 185-223 478-516 (518)
132 KOG1853 LIS1-interacting prote 79.4 55 0.0012 32.6 13.2 93 131-223 70-172 (333)
133 KOG0977 Nuclear envelope prote 79.4 27 0.0006 37.4 12.1 54 171-224 139-192 (546)
134 COG3883 Uncharacterized protei 79.2 40 0.00087 33.1 12.3 53 150-202 36-88 (265)
135 TIGR03752 conj_TIGR03752 integ 78.9 17 0.00037 38.2 10.3 38 164-201 64-101 (472)
136 PF08172 CASP_C: CASP C termin 78.9 8.3 0.00018 37.0 7.5 32 152-183 93-124 (248)
137 PF04849 HAP1_N: HAP1 N-termin 78.9 28 0.0006 34.8 11.3 45 155-199 220-267 (306)
138 PF12709 Kinetocho_Slk19: Cent 78.8 10 0.00022 31.6 6.9 33 150-182 40-72 (87)
139 PF06419 COG6: Conserved oligo 78.8 42 0.0009 35.9 13.3 88 135-222 28-118 (618)
140 smart00338 BRLZ basic region l 78.8 24 0.00051 26.5 8.5 34 159-192 26-59 (65)
141 PF05667 DUF812: Protein of un 78.6 30 0.00065 37.3 12.2 60 149-208 325-384 (594)
142 PF04012 PspA_IM30: PspA/IM30 78.3 30 0.00065 31.5 10.7 52 155-206 101-152 (221)
143 PRK13922 rod shape-determining 78.1 38 0.00082 31.9 11.6 40 151-194 68-107 (276)
144 KOG4571 Activating transcripti 78.0 20 0.00044 35.6 10.0 39 176-214 251-290 (294)
145 PF15294 Leu_zip: Leucine zipp 78.0 7.9 0.00017 38.1 7.2 45 157-201 130-174 (278)
146 PF04849 HAP1_N: HAP1 N-termin 78.0 25 0.00055 35.1 10.7 37 153-189 161-197 (306)
147 PRK00888 ftsB cell division pr 77.8 10 0.00022 31.8 6.9 27 173-199 34-60 (105)
148 PF15030 DUF4527: Protein of u 77.7 72 0.0016 31.4 13.3 38 143-180 49-86 (277)
149 PF05700 BCAS2: Breast carcino 77.7 46 0.001 31.0 11.9 75 152-226 136-214 (221)
150 PF06428 Sec2p: GDP/GTP exchan 77.6 3 6.5E-05 35.1 3.7 77 152-228 8-85 (100)
151 PRK10803 tol-pal system protei 77.6 14 0.00031 35.2 8.7 46 153-198 55-100 (263)
152 PF07106 TBPIP: Tat binding pr 77.6 15 0.00032 32.4 8.2 47 154-200 81-129 (169)
153 PF02183 HALZ: Homeobox associ 77.3 11 0.00024 27.5 6.0 38 157-194 3-40 (45)
154 PF13851 GAS: Growth-arrest sp 77.1 62 0.0013 29.9 13.6 55 131-186 73-127 (201)
155 smart00787 Spc7 Spc7 kinetocho 76.7 83 0.0018 31.2 14.9 41 155-195 147-187 (312)
156 PF13094 CENP-Q: CENP-Q, a CEN 76.5 31 0.00068 30.1 9.9 58 154-211 22-79 (160)
157 KOG0971 Microtubule-associated 76.4 49 0.0011 37.9 13.2 25 135-159 284-308 (1243)
158 TIGR03495 phage_LysB phage lys 76.4 45 0.00099 29.6 10.8 73 154-226 28-100 (135)
159 PF10481 CENP-F_N: Cenp-F N-te 76.3 88 0.0019 31.3 14.0 37 182-225 97-133 (307)
160 KOG4360 Uncharacterized coiled 76.2 31 0.00067 37.0 11.2 51 152-202 219-269 (596)
161 PF05377 FlaC_arch: Flagella a 76.2 17 0.00036 28.0 7.0 32 184-215 18-49 (55)
162 TIGR00414 serS seryl-tRNA synt 76.2 37 0.00081 34.6 11.7 46 157-202 42-91 (418)
163 COG2900 SlyX Uncharacterized p 75.7 18 0.00038 29.3 7.3 35 152-186 8-42 (72)
164 PRK13169 DNA replication intia 75.7 16 0.00035 31.3 7.6 39 156-194 5-43 (110)
165 KOG4674 Uncharacterized conser 75.4 16 0.00035 43.9 9.9 67 157-223 1255-1322(1822)
166 PF05103 DivIVA: DivIVA protei 75.3 1.7 3.6E-05 36.1 1.6 46 152-197 25-70 (131)
167 KOG1962 B-cell receptor-associ 75.3 11 0.00023 36.0 7.0 46 152-197 165-210 (216)
168 PRK05431 seryl-tRNA synthetase 75.3 82 0.0018 32.2 13.9 51 128-184 10-60 (425)
169 KOG0250 DNA repair protein RAD 74.9 54 0.0012 37.8 13.3 61 149-209 362-424 (1074)
170 KOG3119 Basic region leucine z 74.8 19 0.00042 34.7 8.8 64 151-228 193-256 (269)
171 PF00170 bZIP_1: bZIP transcri 74.7 27 0.00059 26.2 7.9 9 185-193 38-46 (64)
172 PF00038 Filament: Intermediat 74.6 79 0.0017 30.0 15.9 32 149-180 220-251 (312)
173 PF01166 TSC22: TSC-22/dip/bun 74.5 5.6 0.00012 31.0 4.1 28 167-194 15-42 (59)
174 PF15058 Speriolin_N: Sperioli 74.4 5.1 0.00011 37.7 4.6 42 179-220 11-52 (200)
175 PF14817 HAUS5: HAUS augmin-li 74.3 48 0.001 36.1 12.4 28 155-182 82-109 (632)
176 PF15035 Rootletin: Ciliary ro 74.3 34 0.00073 31.5 9.8 55 152-206 67-121 (182)
177 KOG0976 Rho/Rac1-interacting s 74.2 37 0.00079 38.5 11.5 40 160-199 93-132 (1265)
178 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.0 56 0.0012 28.0 10.7 15 185-199 103-117 (132)
179 PF00769 ERM: Ezrin/radixin/mo 73.9 84 0.0018 29.9 13.9 66 156-221 51-116 (246)
180 KOG0161 Myosin class II heavy 73.8 43 0.00094 40.8 12.8 67 136-202 1644-1710(1930)
181 KOG0933 Structural maintenance 73.7 71 0.0015 36.9 13.7 22 179-200 814-835 (1174)
182 PF09755 DUF2046: Uncharacteri 73.7 61 0.0013 32.5 12.1 22 176-197 181-202 (310)
183 TIGR00219 mreC rod shape-deter 73.5 31 0.00067 33.4 9.9 35 160-194 67-105 (283)
184 KOG0161 Myosin class II heavy 73.4 34 0.00074 41.6 11.9 72 153-224 1612-1683(1930)
185 smart00787 Spc7 Spc7 kinetocho 72.9 48 0.001 32.8 11.2 73 153-227 205-290 (312)
186 KOG0946 ER-Golgi vesicle-tethe 72.8 32 0.0007 38.7 10.7 48 152-199 650-697 (970)
187 COG3879 Uncharacterized protei 72.6 31 0.00067 33.6 9.5 26 211-236 92-117 (247)
188 PF12718 Tropomyosin_1: Tropom 72.2 41 0.00088 29.6 9.5 51 152-202 14-64 (143)
189 PRK02224 chromosome segregatio 72.0 80 0.0017 34.4 13.5 16 160-175 538-553 (880)
190 PLN02678 seryl-tRNA synthetase 71.9 84 0.0018 32.8 13.1 90 128-229 14-113 (448)
191 PF15294 Leu_zip: Leucine zipp 71.9 18 0.0004 35.6 7.9 52 176-227 128-179 (278)
192 PF09325 Vps5: Vps5 C terminal 71.3 78 0.0017 28.4 11.9 75 141-218 138-221 (236)
193 KOG0243 Kinesin-like protein [ 71.1 97 0.0021 35.8 14.2 69 138-206 417-495 (1041)
194 COG4372 Uncharacterized protei 71.0 1.4E+02 0.003 31.5 14.1 83 142-224 127-226 (499)
195 PRK02119 hypothetical protein; 70.8 42 0.0009 26.6 8.4 27 154-180 4-30 (73)
196 PF10186 Atg14: UV radiation r 70.6 89 0.0019 28.8 15.2 36 145-180 63-98 (302)
197 PF04977 DivIC: Septum formati 70.5 21 0.00045 26.9 6.5 29 171-199 22-50 (80)
198 TIGR02894 DNA_bind_RsfA transc 70.5 25 0.00054 32.3 7.9 7 186-192 117-123 (161)
199 TIGR00606 rad50 rad50. This fa 70.2 1.1E+02 0.0024 35.5 14.8 23 143-165 848-870 (1311)
200 PRK04406 hypothetical protein; 70.2 47 0.001 26.5 8.6 28 154-181 6-33 (75)
201 TIGR02209 ftsL_broad cell divi 70.1 25 0.00053 27.3 6.9 39 167-205 25-63 (85)
202 PF06216 RTBV_P46: Rice tungro 69.9 25 0.00055 34.9 8.4 49 152-200 64-112 (389)
203 KOG4603 TBP-1 interacting prot 69.7 47 0.001 31.2 9.6 20 157-176 91-110 (201)
204 PF09755 DUF2046: Uncharacteri 69.7 58 0.0012 32.7 10.9 40 140-179 28-68 (310)
205 PRK14127 cell division protein 69.5 36 0.00078 29.2 8.3 36 152-187 30-65 (109)
206 PF08172 CASP_C: CASP C termin 69.4 19 0.00041 34.6 7.3 45 155-199 89-133 (248)
207 PF04949 Transcrip_act: Transc 69.3 93 0.002 28.6 14.2 91 131-222 45-147 (159)
208 KOG0288 WD40 repeat protein Ti 68.6 1.1E+02 0.0024 32.2 12.9 41 155-195 30-70 (459)
209 PLN02678 seryl-tRNA synthetase 68.6 31 0.00067 35.9 9.2 29 159-187 33-61 (448)
210 PF04871 Uso1_p115_C: Uso1 / p 68.5 78 0.0017 27.7 10.4 15 214-228 101-115 (136)
211 KOG0996 Structural maintenance 68.4 70 0.0015 37.4 12.4 84 143-228 533-616 (1293)
212 COG4372 Uncharacterized protei 68.3 1.5E+02 0.0033 31.2 13.8 29 170-198 141-169 (499)
213 PF04977 DivIC: Septum formati 68.3 26 0.00055 26.4 6.6 29 150-178 22-50 (80)
214 PF06785 UPF0242: Uncharacteri 68.1 30 0.00064 35.5 8.6 49 148-196 123-171 (401)
215 KOG4403 Cell surface glycoprot 68.1 45 0.00097 35.4 10.1 16 209-224 303-318 (575)
216 PF12128 DUF3584: Protein of u 68.0 1.8E+02 0.0039 33.6 15.8 25 155-179 624-648 (1201)
217 KOG4360 Uncharacterized coiled 67.7 77 0.0017 34.2 11.8 53 148-200 194-253 (596)
218 PF08232 Striatin: Striatin fa 67.7 38 0.00083 29.5 8.3 48 155-202 14-61 (134)
219 KOG0804 Cytoplasmic Zn-finger 67.5 78 0.0017 33.6 11.7 22 152-173 354-375 (493)
220 KOG0709 CREB/ATF family transc 67.4 12 0.00025 39.4 5.8 55 145-199 254-312 (472)
221 PF14915 CCDC144C: CCDC144C pr 67.0 1.4E+02 0.003 30.1 12.8 61 141-201 182-242 (305)
222 KOG0804 Cytoplasmic Zn-finger 66.8 62 0.0013 34.3 10.8 38 157-194 373-410 (493)
223 KOG0999 Microtubule-associated 66.6 1.2E+02 0.0025 33.4 12.9 43 160-202 171-216 (772)
224 COG1196 Smc Chromosome segrega 66.4 1.6E+02 0.0035 33.8 15.0 6 293-298 597-602 (1163)
225 cd07666 BAR_SNX7 The Bin/Amphi 66.3 1.3E+02 0.0028 29.0 13.0 75 132-217 151-227 (243)
226 PF09738 DUF2051: Double stran 66.3 88 0.0019 31.1 11.4 16 124-140 86-101 (302)
227 COG3883 Uncharacterized protei 66.1 72 0.0016 31.3 10.6 43 157-199 50-92 (265)
228 PF05700 BCAS2: Breast carcino 65.9 37 0.0008 31.6 8.3 32 171-202 173-204 (221)
229 PF03980 Nnf1: Nnf1 ; InterPr 65.8 11 0.00023 31.1 4.3 30 150-179 78-107 (109)
230 KOG4196 bZIP transcription fac 65.6 26 0.00055 31.4 6.8 10 115-124 23-32 (135)
231 PF07889 DUF1664: Protein of u 65.4 53 0.0012 28.8 8.7 41 184-224 58-98 (126)
232 cd07596 BAR_SNX The Bin/Amphip 65.3 93 0.002 27.1 14.7 58 160-220 146-205 (218)
233 PHA02562 46 endonuclease subun 65.1 1.4E+02 0.003 30.5 13.0 6 291-296 518-523 (562)
234 KOG4643 Uncharacterized coiled 65.1 1E+02 0.0022 35.7 12.7 30 150-179 528-557 (1195)
235 PF05791 Bacillus_HBL: Bacillu 65.0 83 0.0018 28.5 10.2 78 144-224 102-179 (184)
236 PF12128 DUF3584: Protein of u 64.9 1.6E+02 0.0035 34.0 14.7 51 130-181 785-838 (1201)
237 PF03962 Mnd1: Mnd1 family; I 64.8 59 0.0013 29.8 9.3 21 145-165 76-96 (188)
238 PF04065 Not3: Not1 N-terminal 64.7 1.3E+02 0.0027 29.0 11.8 85 112-205 98-188 (233)
239 PHA03155 hypothetical protein; 64.6 8.7 0.00019 33.5 3.6 24 153-176 9-32 (115)
240 PF09728 Taxilin: Myosin-like 64.6 66 0.0014 31.7 10.2 66 151-216 243-308 (309)
241 COG4942 Membrane-bound metallo 64.4 1.8E+02 0.0038 30.5 13.5 65 138-202 38-102 (420)
242 PF11180 DUF2968: Protein of u 64.4 1.3E+02 0.0028 28.4 12.1 68 159-226 119-186 (192)
243 COG2919 Septum formation initi 64.4 89 0.0019 26.5 11.1 62 135-202 25-86 (117)
244 PF05377 FlaC_arch: Flagella a 64.4 27 0.00058 26.8 5.8 25 154-178 2-26 (55)
245 cd07596 BAR_SNX The Bin/Amphip 64.3 98 0.0021 27.0 10.8 63 135-197 100-169 (218)
246 PF05812 Herpes_BLRF2: Herpesv 64.3 11 0.00023 33.0 4.1 26 151-176 2-27 (118)
247 PF12329 TMF_DNA_bd: TATA elem 64.3 70 0.0015 25.3 9.2 47 152-198 12-58 (74)
248 PF07851 TMPIT: TMPIT-like pro 64.2 98 0.0021 31.3 11.4 30 152-181 4-33 (330)
249 PF07200 Mod_r: Modifier of ru 63.8 95 0.002 26.6 13.4 10 115-124 3-12 (150)
250 COG1382 GimC Prefoldin, chaper 63.6 35 0.00075 29.8 7.2 30 149-178 67-96 (119)
251 PLN02320 seryl-tRNA synthetase 63.6 1.8E+02 0.0038 31.1 13.6 38 184-228 134-171 (502)
252 PF07246 Phlebovirus_NSM: Phle 63.4 92 0.002 30.7 10.7 64 159-223 175-238 (264)
253 PF06810 Phage_GP20: Phage min 63.4 1.1E+02 0.0024 27.3 10.7 60 155-214 30-92 (155)
254 PF04102 SlyX: SlyX; InterPro 63.2 54 0.0012 25.4 7.5 24 157-180 2-25 (69)
255 PF15619 Lebercilin: Ciliary p 62.9 92 0.002 28.9 10.2 15 209-223 172-186 (194)
256 PF12711 Kinesin-relat_1: Kine 62.8 26 0.00056 29.0 5.9 15 209-223 52-66 (86)
257 PRK10803 tol-pal system protei 62.6 43 0.00094 32.0 8.4 48 154-201 42-89 (263)
258 PF06632 XRCC4: DNA double-str 62.6 1.3E+02 0.0028 30.4 12.0 51 156-206 141-197 (342)
259 KOG0980 Actin-binding protein 62.5 1.8E+02 0.0039 33.4 13.8 29 174-202 453-481 (980)
260 PF05483 SCP-1: Synaptonemal c 62.2 1.9E+02 0.0041 32.4 13.7 92 136-227 591-687 (786)
261 PF05483 SCP-1: Synaptonemal c 62.1 1E+02 0.0023 34.3 11.8 70 157-226 585-654 (786)
262 KOG1265 Phospholipase C [Lipid 62.0 2.5E+02 0.0053 32.6 14.8 67 135-201 1032-1103(1189)
263 PF01486 K-box: K-box region; 61.9 46 0.00099 27.0 7.3 21 203-223 63-83 (100)
264 PRK04863 mukB cell division pr 61.9 2E+02 0.0044 34.5 14.9 54 149-202 373-426 (1486)
265 PF14817 HAUS5: HAUS augmin-li 61.8 1.6E+02 0.0035 32.2 13.3 53 143-195 77-129 (632)
266 PF08606 Prp19: Prp19/Pso4-lik 61.8 56 0.0012 26.3 7.4 55 171-225 6-67 (70)
267 TIGR02680 conserved hypothetic 61.8 2.1E+02 0.0046 33.7 15.0 10 23-32 84-93 (1353)
268 PF05667 DUF812: Protein of un 61.7 68 0.0015 34.6 10.4 49 151-199 334-382 (594)
269 TIGR01069 mutS2 MutS2 family p 61.6 1.5E+02 0.0032 32.9 13.2 11 307-317 727-737 (771)
270 PF10234 Cluap1: Clusterin-ass 61.4 98 0.0021 30.4 10.6 6 51-56 43-48 (267)
271 KOG2129 Uncharacterized conser 60.7 24 0.00051 37.2 6.5 65 156-222 47-114 (552)
272 KOG1103 Predicted coiled-coil 60.6 27 0.00058 36.2 6.8 65 140-204 226-290 (561)
273 PRK00409 recombination and DNA 60.6 1.5E+02 0.0032 32.9 13.0 11 307-317 738-748 (782)
274 PRK02793 phi X174 lysis protei 60.6 82 0.0018 24.8 8.2 26 155-180 4-29 (72)
275 PHA03162 hypothetical protein; 60.5 5.9 0.00013 35.3 2.0 26 150-175 11-36 (135)
276 PF01166 TSC22: TSC-22/dip/bun 60.5 15 0.00033 28.6 4.0 23 152-174 21-43 (59)
277 PF10174 Cast: RIM-binding pro 60.4 2.2E+02 0.0047 32.0 14.1 72 149-220 298-376 (775)
278 PF14988 DUF4515: Domain of un 60.3 1.5E+02 0.0032 27.8 11.2 46 154-199 49-97 (206)
279 PF07558 Shugoshin_N: Shugoshi 60.3 9 0.0002 27.9 2.6 33 164-196 12-44 (46)
280 PF13166 AAA_13: AAA domain 60.3 2.3E+02 0.0051 30.0 14.0 65 156-220 407-471 (712)
281 KOG4001 Axonemal dynein light 60.2 79 0.0017 30.6 9.4 52 141-192 170-225 (259)
282 KOG4603 TBP-1 interacting prot 60.0 77 0.0017 29.9 9.1 42 161-202 81-122 (201)
283 PF14988 DUF4515: Domain of un 59.8 1.2E+02 0.0025 28.4 10.5 37 178-214 154-190 (206)
284 PF01920 Prefoldin_2: Prefoldi 59.8 30 0.00066 27.3 5.8 27 153-179 63-89 (106)
285 PRK12705 hypothetical protein; 59.8 2.2E+02 0.0048 30.3 13.6 9 263-271 241-249 (508)
286 PF10168 Nup88: Nuclear pore c 59.7 1.2E+02 0.0025 33.6 11.9 10 215-224 639-648 (717)
287 TIGR02231 conserved hypothetic 59.6 1.5E+02 0.0032 30.7 12.2 25 172-196 130-154 (525)
288 PF15058 Speriolin_N: Sperioli 59.6 18 0.00038 34.2 5.0 35 154-196 7-41 (200)
289 PF10226 DUF2216: Uncharacteri 59.3 86 0.0019 29.7 9.4 73 118-202 71-144 (195)
290 PF09738 DUF2051: Double stran 59.2 1.9E+02 0.0042 28.7 13.1 6 94-99 70-75 (302)
291 PF14645 Chibby: Chibby family 59.2 32 0.0007 29.5 6.2 35 158-192 77-111 (116)
292 PF09730 BicD: Microtubule-ass 59.1 87 0.0019 34.7 10.8 71 152-224 62-137 (717)
293 PF06785 UPF0242: Uncharacteri 59.0 2E+02 0.0044 29.7 12.5 68 131-203 76-157 (401)
294 TIGR03185 DNA_S_dndD DNA sulfu 59.0 1.3E+02 0.0028 32.2 11.9 42 153-194 210-251 (650)
295 PF08537 NBP1: Fungal Nap bind 58.8 1.2E+02 0.0025 30.8 10.8 75 130-205 122-207 (323)
296 KOG0996 Structural maintenance 58.8 1.2E+02 0.0026 35.6 12.0 17 179-195 439-455 (1293)
297 KOG4343 bZIP transcription fac 58.8 55 0.0012 35.5 8.9 65 126-202 274-338 (655)
298 PF07716 bZIP_2: Basic region 58.7 32 0.00069 25.2 5.3 25 176-200 28-52 (54)
299 PRK00888 ftsB cell division pr 58.5 43 0.00093 28.1 6.7 31 149-179 31-61 (105)
300 PF07058 Myosin_HC-like: Myosi 58.3 40 0.00086 34.2 7.4 42 136-181 87-137 (351)
301 PF10146 zf-C4H2: Zinc finger- 58.2 1.7E+02 0.0038 27.9 12.1 58 170-227 36-100 (230)
302 PF07558 Shugoshin_N: Shugoshi 58.2 12 0.00025 27.3 2.9 40 135-175 5-44 (46)
303 PF04999 FtsL: Cell division p 58.0 48 0.001 26.5 6.7 40 166-205 35-74 (97)
304 PF04340 DUF484: Protein of un 58.0 92 0.002 28.6 9.4 48 153-204 41-88 (225)
305 KOG0946 ER-Golgi vesicle-tethe 57.7 1.3E+02 0.0027 34.3 11.6 62 136-197 655-716 (970)
306 PF08826 DMPK_coil: DMPK coile 57.0 91 0.002 24.2 9.1 10 142-151 4-13 (61)
307 TIGR00606 rad50 rad50. This fa 56.6 2E+02 0.0044 33.5 13.7 46 151-196 887-932 (1311)
308 KOG4797 Transcriptional regula 56.4 22 0.00049 31.0 4.7 26 169-194 70-95 (123)
309 KOG0933 Structural maintenance 56.3 2.9E+02 0.0062 32.4 14.2 47 154-200 817-863 (1174)
310 PF15290 Syntaphilin: Golgi-lo 56.1 1.2E+02 0.0026 30.4 10.2 28 154-181 77-104 (305)
311 PF04859 DUF641: Plant protein 56.0 40 0.00087 29.8 6.3 35 159-193 80-114 (131)
312 PF13935 Ead_Ea22: Ead/Ea22-li 56.0 63 0.0014 28.1 7.6 11 150-160 79-89 (139)
313 PF15619 Lebercilin: Ciliary p 56.0 1.7E+02 0.0036 27.2 10.7 20 154-173 84-103 (194)
314 PF12709 Kinetocho_Slk19: Cent 56.0 1.1E+02 0.0024 25.5 8.5 52 151-202 26-78 (87)
315 PF10779 XhlA: Haemolysin XhlA 55.8 70 0.0015 24.8 7.0 46 156-201 3-48 (71)
316 smart00502 BBC B-Box C-termina 55.6 1E+02 0.0022 24.4 13.6 78 148-225 17-96 (127)
317 COG5293 Predicted ATPase [Gene 55.6 2.8E+02 0.0062 29.9 13.3 75 134-208 330-414 (591)
318 KOG0999 Microtubule-associated 55.6 1E+02 0.0022 33.8 10.2 63 158-227 7-76 (772)
319 COG1792 MreC Cell shape-determ 55.5 88 0.0019 30.5 9.2 43 182-228 68-110 (284)
320 KOG4593 Mitotic checkpoint pro 55.4 1.1E+02 0.0024 34.0 10.7 29 199-227 297-325 (716)
321 PF06810 Phage_GP20: Phage min 55.4 1.5E+02 0.0033 26.4 10.0 14 168-181 53-66 (155)
322 KOG4807 F-actin binding protei 55.3 1.5E+02 0.0033 31.3 11.2 48 150-197 416-480 (593)
323 PF06008 Laminin_I: Laminin Do 55.3 1.9E+02 0.004 27.3 11.2 50 153-202 46-95 (264)
324 PRK04325 hypothetical protein; 55.3 1E+02 0.0022 24.4 7.9 25 155-179 5-29 (74)
325 TIGR01843 type_I_hlyD type I s 55.2 2E+02 0.0044 27.7 13.4 11 215-225 217-227 (423)
326 KOG2010 Double stranded RNA bi 55.1 58 0.0012 33.4 8.0 51 156-206 144-195 (405)
327 PF12795 MscS_porin: Mechanose 55.1 1.8E+02 0.0039 27.1 13.0 86 129-214 115-213 (240)
328 KOG2391 Vacuolar sorting prote 54.8 1.1E+02 0.0023 31.5 9.8 42 158-199 224-265 (365)
329 PRK00846 hypothetical protein; 54.8 1.1E+02 0.0024 24.9 8.2 25 155-179 9-33 (77)
330 PF07798 DUF1640: Protein of u 54.6 1.5E+02 0.0032 26.6 9.9 61 155-218 47-108 (177)
331 COG4467 Regulator of replicati 54.5 64 0.0014 28.1 7.1 39 156-194 5-43 (114)
332 cd07627 BAR_Vps5p The Bin/Amph 54.4 1.8E+02 0.0038 26.8 12.8 32 140-171 103-134 (216)
333 PF13851 GAS: Growth-arrest sp 54.0 1.8E+02 0.004 26.9 15.3 46 151-196 85-130 (201)
334 PRK10636 putative ABC transpor 54.0 1.3E+02 0.0028 32.2 10.8 49 153-201 564-619 (638)
335 PF12777 MT: Microtubule-bindi 53.8 75 0.0016 31.3 8.6 48 150-197 233-280 (344)
336 PF04129 Vps52: Vps52 / Sac2 f 53.8 2E+02 0.0043 30.1 12.0 70 151-220 13-82 (508)
337 KOG2264 Exostosin EXT1L [Signa 53.5 84 0.0018 34.6 9.3 48 152-199 93-140 (907)
338 PF12329 TMF_DNA_bd: TATA elem 53.4 1.1E+02 0.0024 24.2 10.3 63 154-223 7-69 (74)
339 PF01486 K-box: K-box region; 53.3 50 0.0011 26.8 6.2 23 153-175 76-98 (100)
340 PRK00295 hypothetical protein; 53.3 1.1E+02 0.0023 23.9 7.9 24 157-180 3-26 (68)
341 PF09763 Sec3_C: Exocyst compl 53.3 3.2E+02 0.007 29.5 13.9 41 152-192 37-77 (701)
342 PRK14160 heat shock protein Gr 53.2 1.5E+02 0.0032 28.2 10.0 46 153-198 55-100 (211)
343 KOG0963 Transcription factor/C 52.9 97 0.0021 33.9 9.7 52 141-193 306-357 (629)
344 PF10267 Tmemb_cc2: Predicted 52.1 1.2E+02 0.0026 31.4 9.9 36 185-221 274-318 (395)
345 PF08826 DMPK_coil: DMPK coile 52.1 1.1E+02 0.0024 23.8 9.8 20 182-201 20-39 (61)
346 PF13805 Pil1: Eisosome compon 52.1 1.2E+02 0.0027 29.8 9.6 62 136-202 132-194 (271)
347 PF15254 CCDC14: Coiled-coil d 52.0 1.8E+02 0.0039 33.0 11.6 12 215-226 536-547 (861)
348 PF05600 DUF773: Protein of un 51.6 1.6E+02 0.0034 31.2 11.0 53 150-202 430-482 (507)
349 KOG4674 Uncharacterized conser 51.5 2.5E+02 0.0054 34.6 13.4 25 153-177 67-91 (1822)
350 PF09325 Vps5: Vps5 C terminal 51.4 1.8E+02 0.004 26.1 13.5 85 135-222 118-202 (236)
351 PLN02320 seryl-tRNA synthetase 51.4 1.5E+02 0.0032 31.6 10.7 30 152-181 93-122 (502)
352 PF14282 FlxA: FlxA-like prote 51.3 96 0.0021 25.9 7.7 18 154-171 21-38 (106)
353 PF07407 Seadorna_VP6: Seadorn 51.3 81 0.0018 32.4 8.4 12 153-164 47-58 (420)
354 PF04012 PspA_IM30: PspA/IM30 51.1 1.9E+02 0.0042 26.2 10.3 25 136-160 49-73 (221)
355 PF05557 MAD: Mitotic checkpoi 51.1 73 0.0016 34.5 8.6 74 151-224 509-615 (722)
356 COG1792 MreC Cell shape-determ 51.1 1.1E+02 0.0023 29.9 9.0 46 147-196 61-106 (284)
357 PF04871 Uso1_p115_C: Uso1 / p 51.1 1.7E+02 0.0037 25.6 10.7 21 153-173 28-48 (136)
358 COG1340 Uncharacterized archae 51.1 2.5E+02 0.0055 28.1 11.6 72 150-221 4-75 (294)
359 PF13874 Nup54: Nucleoporin co 51.1 1.7E+02 0.0036 25.5 9.4 30 152-181 51-80 (141)
360 PF11365 DUF3166: Protein of u 50.9 70 0.0015 27.0 6.7 32 156-187 5-36 (96)
361 PF02388 FemAB: FemAB family; 50.2 1.1E+02 0.0024 30.8 9.3 27 151-177 241-267 (406)
362 PF00261 Tropomyosin: Tropomyo 50.0 2.2E+02 0.0048 26.6 14.1 37 157-193 118-154 (237)
363 PRK11281 hypothetical protein; 49.9 1.3E+02 0.0029 34.9 10.8 24 127-150 156-179 (1113)
364 PF11500 Cut12: Spindle pole b 49.9 1.4E+02 0.003 27.2 8.8 52 129-181 83-134 (152)
365 PRK13923 putative spore coat p 49.9 71 0.0015 29.5 7.1 27 173-199 111-137 (170)
366 PF14645 Chibby: Chibby family 49.9 63 0.0014 27.8 6.4 19 181-199 79-97 (116)
367 COG5185 HEC1 Protein involved 49.7 1.3E+02 0.0028 32.5 9.8 51 148-202 274-324 (622)
368 KOG0964 Structural maintenance 49.6 4.2E+02 0.009 31.1 14.1 84 144-228 410-501 (1200)
369 PF05300 DUF737: Protein of un 49.5 65 0.0014 30.0 7.0 55 131-185 113-167 (187)
370 PF09727 CortBP2: Cortactin-bi 49.4 2.3E+02 0.005 26.7 13.4 29 130-161 94-122 (192)
371 PF15066 CAGE1: Cancer-associa 49.3 1.2E+02 0.0025 32.5 9.4 66 157-222 343-425 (527)
372 PF04642 DUF601: Protein of un 49.0 89 0.0019 31.1 8.0 51 152-202 217-274 (311)
373 PF04728 LPP: Lipoprotein leuc 48.9 1.1E+02 0.0023 23.7 6.8 30 159-188 3-32 (56)
374 PF08912 Rho_Binding: Rho Bind 48.9 1.4E+02 0.003 24.0 8.1 33 157-189 1-33 (69)
375 TIGR00634 recN DNA repair prot 48.7 2.9E+02 0.0063 29.0 12.4 8 126-133 140-147 (563)
376 KOG3335 Predicted coiled-coil 48.6 40 0.00087 31.5 5.4 43 129-178 90-132 (181)
377 KOG3595 Dyneins, heavy chain [ 48.5 1.8E+02 0.0039 34.4 11.7 56 169-224 958-1013(1395)
378 KOG0982 Centrosomal protein Nu 48.4 3.7E+02 0.008 28.7 14.6 31 147-177 299-329 (502)
379 KOG1318 Helix loop helix trans 48.4 1.1E+02 0.0024 31.9 9.0 37 127-164 226-262 (411)
380 PRK13729 conjugal transfer pil 48.4 82 0.0018 33.4 8.2 40 154-200 71-110 (475)
381 PF15188 CCDC-167: Coiled-coil 48.1 97 0.0021 25.6 7.0 52 153-204 6-60 (85)
382 PF02841 GBP_C: Guanylate-bind 47.9 2.6E+02 0.0057 26.9 15.5 13 209-221 285-297 (297)
383 PRK00106 hypothetical protein; 47.8 3.9E+02 0.0084 28.8 15.6 16 146-161 66-81 (535)
384 KOG4436 Predicted GTPase activ 47.7 23 0.0005 39.8 4.3 54 152-205 829-887 (948)
385 PF12808 Mto2_bdg: Micro-tubul 47.6 55 0.0012 24.8 5.1 46 149-197 1-46 (52)
386 KOG0979 Structural maintenance 47.5 5.3E+02 0.011 30.2 14.7 108 110-222 165-290 (1072)
387 PF12808 Mto2_bdg: Micro-tubul 47.3 56 0.0012 24.8 5.1 25 155-179 25-49 (52)
388 PF15290 Syntaphilin: Golgi-lo 47.3 2.1E+02 0.0044 28.9 10.3 44 154-202 91-139 (305)
389 PF12761 End3: Actin cytoskele 47.1 2.4E+02 0.0053 26.6 10.3 76 128-221 97-194 (195)
390 KOG0995 Centromere-associated 47.1 3.2E+02 0.0069 29.9 12.3 42 161-202 282-323 (581)
391 PRK00736 hypothetical protein; 46.9 1.4E+02 0.003 23.3 7.9 22 157-178 3-24 (68)
392 PF05622 HOOK: HOOK protein; 46.6 6.5 0.00014 42.3 0.0 33 149-181 322-354 (713)
393 TIGR02209 ftsL_broad cell divi 46.6 81 0.0018 24.3 6.2 29 150-178 29-57 (85)
394 PF04799 Fzo_mitofusin: fzo-li 46.6 1.7E+02 0.0037 27.1 9.1 40 183-222 123-165 (171)
395 PF08702 Fib_alpha: Fibrinogen 46.2 2.1E+02 0.0046 25.3 10.7 12 213-224 116-127 (146)
396 PF15070 GOLGA2L5: Putative go 46.2 1.9E+02 0.0042 31.4 10.8 46 151-196 166-211 (617)
397 PF06008 Laminin_I: Laminin Do 46.1 2.6E+02 0.0057 26.3 11.4 47 154-200 54-100 (264)
398 PF14915 CCDC144C: CCDC144C pr 45.9 3.3E+02 0.0072 27.5 11.5 54 145-198 21-81 (305)
399 PF04340 DUF484: Protein of un 45.5 1.1E+02 0.0024 28.1 7.9 37 173-209 40-76 (225)
400 KOG3564 GTPase-activating prot 45.3 1.9E+02 0.0041 31.3 10.2 63 143-205 37-102 (604)
401 PRK10929 putative mechanosensi 45.3 4.8E+02 0.01 30.6 14.2 98 117-220 198-329 (1109)
402 PF11365 DUF3166: Protein of u 45.3 1.6E+02 0.0035 24.9 8.0 21 208-228 29-49 (96)
403 PRK11578 macrolide transporter 45.3 1.6E+02 0.0036 28.7 9.4 13 121-133 86-98 (370)
404 PRK15396 murein lipoprotein; P 45.2 1.5E+02 0.0033 24.1 7.6 25 155-179 28-52 (78)
405 PF13805 Pil1: Eisosome compon 45.0 3.2E+02 0.007 27.0 11.3 47 135-181 148-194 (271)
406 PF00769 ERM: Ezrin/radixin/mo 44.9 2.8E+02 0.0061 26.4 11.1 38 148-185 29-66 (246)
407 PF11180 DUF2968: Protein of u 44.8 2.8E+02 0.006 26.3 13.4 67 136-202 110-176 (192)
408 CHL00118 atpG ATP synthase CF0 44.6 2.2E+02 0.0047 24.9 15.5 46 129-175 52-97 (156)
409 PHA03011 hypothetical protein; 44.6 2.1E+02 0.0045 24.9 8.7 48 171-225 69-116 (120)
410 TIGR00414 serS seryl-tRNA synt 44.6 3.6E+02 0.0079 27.6 14.7 76 152-227 30-109 (418)
411 PRK10963 hypothetical protein; 44.5 87 0.0019 29.1 7.1 47 153-203 38-84 (223)
412 PRK10361 DNA recombination pro 44.5 4.2E+02 0.009 28.2 14.8 16 212-227 144-159 (475)
413 KOG0244 Kinesin-like protein [ 44.4 1.6E+02 0.0034 33.7 10.0 75 150-227 507-598 (913)
414 PF09789 DUF2353: Uncharacteri 44.4 1.4E+02 0.003 30.1 8.8 8 290-297 253-260 (319)
415 KOG0447 Dynamin-like GTP bindi 44.2 1.7E+02 0.0037 32.5 9.8 37 155-194 229-265 (980)
416 PRK13428 F0F1 ATP synthase sub 44.2 3.8E+02 0.0083 27.7 15.6 46 129-175 31-76 (445)
417 smart00340 HALZ homeobox assoc 44.1 62 0.0014 23.9 4.7 25 175-199 7-31 (44)
418 PF13874 Nup54: Nucleoporin co 44.0 2E+02 0.0042 25.0 8.7 45 152-196 44-88 (141)
419 KOG0976 Rho/Rac1-interacting s 43.9 2E+02 0.0042 33.1 10.4 52 151-202 105-156 (1265)
420 PF05701 WEMBL: Weak chloropla 43.9 3.1E+02 0.0068 28.8 11.7 53 172-224 301-353 (522)
421 TIGR01005 eps_transp_fam exopo 43.9 2.7E+02 0.0058 30.1 11.5 100 128-228 165-271 (754)
422 cd07429 Cby_like Chibby, a nuc 43.8 51 0.0011 28.4 5.0 20 160-179 80-99 (108)
423 PF12999 PRKCSH-like: Glucosid 43.7 1.9E+02 0.0041 26.9 8.9 63 113-179 111-173 (176)
424 KOG0249 LAR-interacting protei 43.6 1.8E+02 0.004 32.8 10.1 40 161-200 218-257 (916)
425 PRK14474 F0F1 ATP synthase sub 43.5 3E+02 0.0065 26.3 15.6 46 129-175 35-80 (250)
426 KOG0018 Structural maintenance 43.4 3.4E+02 0.0075 31.8 12.4 55 146-200 417-471 (1141)
427 cd00632 Prefoldin_beta Prefold 43.3 1.3E+02 0.0027 24.7 7.1 37 151-187 62-98 (105)
428 cd07429 Cby_like Chibby, a nuc 43.2 43 0.00092 28.9 4.4 24 176-199 75-98 (108)
429 TIGR02231 conserved hypothetic 43.0 4E+02 0.0087 27.6 12.8 28 171-198 136-163 (525)
430 TIGR03007 pepcterm_ChnLen poly 42.9 3.8E+02 0.0082 27.2 13.9 68 155-222 313-383 (498)
431 KOG3850 Predicted membrane pro 42.8 2.1E+02 0.0046 30.0 9.9 70 153-225 290-370 (455)
432 PF10212 TTKRSYEDQ: Predicted 42.8 2.9E+02 0.0063 29.8 11.2 66 156-221 431-500 (518)
433 PF07058 Myosin_HC-like: Myosi 42.6 1.7E+02 0.0036 29.9 9.0 39 161-199 2-40 (351)
434 PF09787 Golgin_A5: Golgin sub 42.6 3.7E+02 0.0081 28.1 12.0 45 135-179 197-241 (511)
435 KOG4001 Axonemal dynein light 42.4 3.3E+02 0.0072 26.5 11.8 75 150-224 162-244 (259)
436 PRK14143 heat shock protein Gr 42.4 3E+02 0.0066 26.5 10.5 15 289-310 196-210 (238)
437 PF11802 CENP-K: Centromere-as 42.3 3.6E+02 0.0077 26.8 11.2 36 140-175 112-147 (268)
438 PF05812 Herpes_BLRF2: Herpesv 42.2 39 0.00085 29.6 4.1 26 175-200 5-30 (118)
439 PF14932 HAUS-augmin3: HAUS au 42.2 3.1E+02 0.0068 26.1 11.8 41 152-192 68-108 (256)
440 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.2 2.2E+02 0.0048 24.3 12.7 29 169-197 62-90 (132)
441 KOG2189 Vacuolar H+-ATPase V0 42.1 2.1E+02 0.0045 32.4 10.3 28 168-195 94-121 (829)
442 KOG0639 Transducin-like enhanc 42.0 3E+02 0.0065 30.1 11.1 74 152-226 30-116 (705)
443 PRK14011 prefoldin subunit alp 41.9 1.5E+02 0.0033 26.4 7.8 10 192-201 125-134 (144)
444 PRK01156 chromosome segregatio 41.8 5.2E+02 0.011 28.5 14.4 7 289-295 844-850 (895)
445 PLN02939 transferase, transfer 41.8 3.2E+02 0.0069 31.6 12.0 25 178-202 224-248 (977)
446 TIGR03545 conserved hypothetic 41.7 1.6E+02 0.0035 31.5 9.3 77 150-226 189-273 (555)
447 PF10174 Cast: RIM-binding pro 41.7 4.6E+02 0.0099 29.6 12.9 9 187-195 378-386 (775)
448 TIGR02132 phaR_Bmeg polyhydrox 41.6 3.1E+02 0.0068 25.9 10.4 51 152-202 79-129 (189)
449 PF06698 DUF1192: Protein of u 41.4 91 0.002 24.2 5.5 24 154-177 23-46 (59)
450 PRK11147 ABC transporter ATPas 41.3 1E+02 0.0023 32.6 7.8 23 154-176 570-592 (635)
451 PF07889 DUF1664: Protein of u 41.3 2.5E+02 0.0054 24.7 9.9 52 151-202 67-118 (126)
452 KOG4370 Ral-GTPase effector RL 41.3 1.1E+02 0.0024 32.5 7.7 58 169-226 409-466 (514)
453 COG1842 PspA Phage shock prote 41.1 3.2E+02 0.007 26.0 10.9 42 156-197 96-137 (225)
454 PRK03992 proteasome-activating 41.0 91 0.002 31.2 7.0 43 151-193 7-49 (389)
455 PHA03162 hypothetical protein; 40.9 34 0.00074 30.6 3.6 22 175-196 15-36 (135)
456 KOG2077 JNK/SAPK-associated pr 40.8 1.1E+02 0.0024 33.7 7.8 54 156-209 326-379 (832)
457 PRK13182 racA polar chromosome 40.7 1.6E+02 0.0034 27.0 7.9 47 153-201 93-139 (175)
458 PF10168 Nup88: Nuclear pore c 40.6 5.5E+02 0.012 28.5 13.4 10 215-224 646-655 (717)
459 PF10359 Fmp27_WPPW: RNA pol I 40.4 2E+02 0.0042 29.9 9.5 35 191-225 197-231 (475)
460 TIGR02680 conserved hypothetic 40.3 7E+02 0.015 29.6 15.3 36 142-177 872-907 (1353)
461 PHA03155 hypothetical protein; 39.9 37 0.00081 29.6 3.6 23 175-197 10-32 (115)
462 KOG0980 Actin-binding protein 39.7 6.6E+02 0.014 29.1 14.0 31 140-170 454-484 (980)
463 PF05008 V-SNARE: Vesicle tran 39.7 1.7E+02 0.0037 22.3 7.3 27 150-176 23-49 (79)
464 PF07795 DUF1635: Protein of u 39.5 2E+02 0.0043 27.6 8.6 51 150-200 9-60 (214)
465 PTZ00454 26S protease regulato 39.4 97 0.0021 31.5 7.0 15 158-172 28-42 (398)
466 PF04899 MbeD_MobD: MbeD/MobD 39.4 2E+02 0.0043 23.0 8.0 50 155-204 17-66 (70)
467 PF12999 PRKCSH-like: Glucosid 39.3 1.6E+02 0.0034 27.4 7.7 6 189-194 162-167 (176)
468 TIGR00634 recN DNA repair prot 39.1 3.8E+02 0.0083 28.2 11.5 94 126-223 297-394 (563)
469 PF09304 Cortex-I_coil: Cortex 39.0 2.6E+02 0.0056 24.2 15.4 68 136-205 21-88 (107)
470 COG0172 SerS Seryl-tRNA synthe 38.9 4.9E+02 0.011 27.4 12.0 65 158-229 42-110 (429)
471 PRK14872 rod shape-determining 38.4 1.9E+02 0.0042 29.3 8.8 22 181-202 58-79 (337)
472 PF11853 DUF3373: Protein of u 38.4 31 0.00068 36.5 3.4 20 153-172 32-51 (489)
473 KOG1003 Actin filament-coating 38.4 2.5E+02 0.0055 26.8 9.0 43 157-199 100-142 (205)
474 KOG2483 Upstream transcription 38.2 72 0.0016 30.7 5.6 38 149-200 102-139 (232)
475 PF10224 DUF2205: Predicted co 38.1 2.2E+02 0.0048 23.2 8.5 58 149-220 5-63 (80)
476 KOG4348 Adaptor protein CMS/SE 37.7 1.8E+02 0.0039 31.1 8.7 58 150-224 567-624 (627)
477 KOG0612 Rho-associated, coiled 37.6 5.5E+02 0.012 30.7 13.0 85 137-221 443-528 (1317)
478 PF05557 MAD: Mitotic checkpoi 37.4 2.9E+02 0.0063 30.0 10.5 62 163-224 500-582 (722)
479 TIGR03007 pepcterm_ChnLen poly 37.2 4.6E+02 0.01 26.6 12.8 100 128-229 132-239 (498)
480 PF06210 DUF1003: Protein of u 37.2 2E+02 0.0044 24.4 7.5 49 139-192 58-106 (108)
481 PRK14148 heat shock protein Gr 37.0 3.6E+02 0.0078 25.3 11.0 73 157-229 38-112 (195)
482 PF05911 DUF869: Plant protein 37.0 6.6E+02 0.014 28.3 14.6 95 129-224 595-689 (769)
483 PF14077 WD40_alt: Alternative 36.9 35 0.00076 25.6 2.5 19 153-171 19-37 (48)
484 PF15397 DUF4618: Domain of un 36.9 4.2E+02 0.0091 26.0 13.6 87 133-220 63-154 (258)
485 PF03961 DUF342: Protein of un 36.8 2.1E+02 0.0046 29.1 9.0 73 151-224 333-405 (451)
486 PRK03992 proteasome-activating 36.8 1.4E+02 0.003 29.9 7.6 47 154-200 3-49 (389)
487 PF09789 DUF2353: Uncharacteri 36.8 4.6E+02 0.01 26.5 12.2 75 145-219 126-228 (319)
488 PRK13460 F0F1 ATP synthase sub 36.5 3E+02 0.0066 24.3 15.5 95 129-224 46-143 (173)
489 PLN03188 kinesin-12 family pro 36.5 4.9E+02 0.011 31.2 12.5 88 130-221 1131-1238(1320)
490 KOG0249 LAR-interacting protei 36.5 5.3E+02 0.012 29.4 12.2 107 114-221 130-257 (916)
491 PRK04778 septation ring format 36.5 5.4E+02 0.012 27.2 12.8 94 129-223 309-412 (569)
492 PF09744 Jnk-SapK_ap_N: JNK_SA 36.4 3.3E+02 0.0071 24.7 11.7 86 135-220 33-122 (158)
493 TIGR01069 mutS2 MutS2 family p 36.3 6.5E+02 0.014 28.1 14.8 97 120-220 487-584 (771)
494 KOG2077 JNK/SAPK-associated pr 36.2 3E+02 0.0066 30.5 10.2 73 152-224 301-373 (832)
495 PRK03947 prefoldin subunit alp 36.1 1.6E+02 0.0034 25.1 6.8 44 154-197 96-139 (140)
496 KOG1899 LAR transmembrane tyro 36.0 2.7E+02 0.0058 31.2 9.8 68 148-216 163-230 (861)
497 KOG3433 Protein involved in me 36.0 3.3E+02 0.0071 26.0 9.3 74 154-227 76-149 (203)
498 PF13815 Dzip-like_N: Iguana/D 36.0 2.2E+02 0.0047 24.0 7.6 51 154-204 68-118 (118)
499 PF15066 CAGE1: Cancer-associa 36.0 4.2E+02 0.0091 28.5 11.0 74 151-224 403-476 (527)
500 COG1729 Uncharacterized protei 35.9 90 0.002 30.6 5.9 46 154-200 58-103 (262)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.41 E-value=1.5e-12 Score=98.36 Aligned_cols=62 Identities=40% Similarity=0.546 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 189 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN 189 (332)
.|+|+.| |+++||+||++||+||+.|+.+||.+|+.|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~r-R~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRR-RRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999 9999999999999999999999999999999999999999998877766666554
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.31 E-value=1.6e-11 Score=92.73 Aligned_cols=61 Identities=39% Similarity=0.637 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020026 128 DPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 189 (332)
Q Consensus 128 DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN 189 (332)
..|+.+ |+++||+||+++|.||+.|+++||.+|..|+.+|..|..++..|...+..|..+|
T Consensus 3 ~~k~~~-rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRER-RRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357888 9999999999999999999999999999999999999999999998888888876
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.09 E-value=5.6e-10 Score=82.20 Aligned_cols=52 Identities=37% Similarity=0.543 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.|+++.| |. +||+||++||+||+.|+.+||.+|..|+.+|..|..++..|++
T Consensus 2 ~~~~~~r-R~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRER-RE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577888 88 9999999999999999999999999999999999999988865
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.01 E-value=4.2e-09 Score=99.64 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
-++|-.| |+|+||.+|+-+|.|||..++++|.++..|..||..|..+...|++.+..|+.+|.+|..+|..+.+.
T Consensus 66 ~EEK~~R-rKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 66 WEEKVQR-RKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4577788 99999999999999999999999999999999999999999999999999999999999999877666
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.98 E-value=7.4e-10 Score=113.60 Aligned_cols=64 Identities=34% Similarity=0.576 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
||.. |||+||+||..||+|||+|+.-||.+++.|..||..|+++.+.|.++...|.+||.+||.
T Consensus 281 krqQ-RmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 281 KRQQ-RMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 7888 999999999999999999999999999999999999999999999999999999999964
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.78 E-value=1e-08 Score=99.25 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 182 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~ 182 (332)
-||.- |+++|||+|+.+|.|||+|+..||.+|..|+..|..|.++|..|+.-|
T Consensus 290 rKRev-RLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 290 RKREV-RLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hHHHH-HHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 47888 999999999999999999999999999999999999999998886543
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.77 E-value=9.8e-09 Score=103.94 Aligned_cols=63 Identities=27% Similarity=0.436 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
-||+| |+|+|.+||+.||.|||.||+.||.+|....+||.+|..+|..|+.++..|..+-+.|
T Consensus 250 LKrvR-RKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 250 LKRVR-RKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHH-HHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 58999 9999999999999999999999999999999999999999988776666665554433
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.99 E-value=1.8e-05 Score=75.97 Aligned_cols=53 Identities=30% Similarity=0.453 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.+|+.+..++||++|.+||.||.++|.+||.+|+.|..+|..|...+..|.+.
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~ 256 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ 256 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 45666347899999999999999999999999999999999999888766543
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.90 E-value=1.8e-07 Score=75.75 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=52.9
Q ss_pred hcCChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020026 114 KAMDPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 189 (332)
Q Consensus 114 k~m~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN 189 (332)
..++.+.... -|.+| |.++||.+|++||.||+.++.+||.++..|..+...|..++..+..+...+...+
T Consensus 19 ~~lt~~q~~~-----lK~~R-Rr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~ 88 (92)
T PF03131_consen 19 RGLTEEQIAE-----LKQRR-RRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKL 88 (92)
T ss_dssp TTS-HHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCH
T ss_pred HcCCHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554443 37788 9999999999999999999999999999988888777777766665554444333
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.36 E-value=0.00092 Score=65.15 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=45.4
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 125 WTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 182 (332)
Q Consensus 125 a~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~ 182 (332)
...++|+.|+....|..+|.|.|+||+.-.+.|+.+++.|+.+|.+|+.++..|.+++
T Consensus 221 ~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 221 YKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777772345566669999999999999999999999888888888877665543
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.70 E-value=0.0097 Score=56.96 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020026 131 RAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 183 (332)
Q Consensus 131 R~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~ 183 (332)
+-++|.-+|=++|+|||.+.|+-..+...+|..|+.||..|+.+|..|++++.
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346678999999999999999999999999999999888888776655433
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.68 E-value=0.016 Score=51.08 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
.|..| |-|+||=.|+-+|-|..+.-.+||.+...|..+...|..+++.
T Consensus 52 lKQrR-RTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 52 LKQRR-RTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred HHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 9999999999999999999998888777776665555544443
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.38 E-value=0.007 Score=64.04 Aligned_cols=63 Identities=27% Similarity=0.342 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 132 AKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 132 ~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+| |.=+||.||++.|.||..-|..||..|..|+.|..+|..+ ...+..+..++|++|..|-+.
T Consensus 492 IR-RRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 492 IR-RRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQE 554 (604)
T ss_pred cc-cccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44 6678999999999999999999999999999888776543 344556677777777776544
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.34 E-value=0.083 Score=41.88 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+-++.||.||+.+-..++.|..++..|+.++..|..+|..|+...+.+.+.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999888888888888888877776644
No 15
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.25 E-value=0.29 Score=42.27 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
|=+..|+.......++..-++.|+..++.|+.++..+..++..++.....+.
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433333333333
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.83 E-value=0.048 Score=46.12 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
..+.+||.++..|..+...|+.++..|-.++..|..||..|+.+|..++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999999999999999887765
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.68 E-value=0.051 Score=46.36 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
..+..||..+..|..+...|+.++..|-.++..|..||..|+.+|..++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35788999999999999999999999999999999999999999987633
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.17 E-value=0.41 Score=37.65 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALKKEVERLK 221 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdalne~L~~EvqrLk 221 (332)
.||..+..|+..+..+..++...+..+..|..|+.....+|...-.. ..|+ ..+++|++|++.++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk-~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLK-EENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 57888888888888888888888888888888888777777554433 3333 45666666655443
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.40 E-value=0.59 Score=43.56 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 020026 182 TTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLqaLEqq 202 (332)
...|..+|.+|+.+++.+..+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 20
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=94.35 E-value=0.95 Score=43.98 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=65.4
Q ss_pred ccCChHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 125 WTVDPKRAKSRILANR-QSAARSKERKARY-ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 125 a~~DpKR~K~RiLaNR-eSA~RSReRKkqy-ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
-..+-||+|+|+-+-- ---++.|+-|.+| |.+|+.+.+.|+.||..|+++-..|-.++..|..+-..|++.|..+.++
T Consensus 68 EK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 68 EKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 3567899997765421 1123345556655 6799999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 020026 203 AQLR 206 (332)
Q Consensus 203 ~~Lr 206 (332)
++..
T Consensus 148 ~~~~ 151 (292)
T KOG4005|consen 148 QQHN 151 (292)
T ss_pred HHHh
Confidence 8754
No 21
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=94.31 E-value=0.31 Score=39.64 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
-++|..++..||.....|..++...+.++..|..||..|..+|..|-..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577889999999999999999999999999999999999999888544
No 22
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.30 E-value=0.43 Score=44.52 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atg 225 (332)
-|++|+.--+.|..||..|...|..+...+..|..|+..|+.++..+.+-.+.. .+|.+|++.||..++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~ 77 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777777777777777664333332 344455555555443
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.85 E-value=0.46 Score=37.31 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
|+.|-..++.|+.||..|..++..++.+...|...|..-+.|+++|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444444444444444443
No 24
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.41 E-value=0.93 Score=35.67 Aligned_cols=61 Identities=28% Similarity=0.289 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 163 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 163 ~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
.|+.++.+|..++..+.+++.....+|+.|...=.....+....-..+..|+.|++.|+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666665544444444444444566666666666653
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.28 E-value=5.1 Score=38.51 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
.+.+-.+.+.+.-.-++.-+++|+.+|..++.+...+++++...
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555555555555555555554433
No 26
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.16 E-value=5.5 Score=37.89 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 020026 146 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA-T 224 (332)
Q Consensus 146 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a-t 224 (332)
+=+..-.+|.+++.+...|..|-....++|.....++..|...-+.++................+..|+.+|.+++.. .
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455899999999999999999999999999999999999888887776666655544445777888999999999 7
Q ss_pred ccCCCC
Q 020026 225 GEMMTP 230 (332)
Q Consensus 225 ge~~~~ 230 (332)
|..+.+
T Consensus 106 gl~~Lp 111 (230)
T PF10146_consen 106 GLEPLP 111 (230)
T ss_pred CCCCCC
Confidence 776543
No 27
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.08 E-value=2 Score=38.82 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 147 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 147 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.......|.+++.-++.|+.|...|..++..++..+..|..||.+|-.|.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555555555555555555555553
No 28
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=92.90 E-value=0.39 Score=41.37 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.+.+||..+.+|-++...|++.+..+-.++..|..||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 5788999999999999999999999999999999999999999976
No 29
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.73 E-value=0.59 Score=36.31 Aligned_cols=49 Identities=29% Similarity=0.293 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
..|.+||.++..++..+.+|...|..-+++...|..+.+.|..||..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999999998888888888888888877777664
No 30
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.56 E-value=7.2 Score=34.67 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
....|++.|-.--+-+++.|+.|+.++..+..+...|...+..+..+...|..+-...+.++..|+.-
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999999999999999999999888888888878877777777777777655
No 31
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.55 E-value=1.9 Score=47.46 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 020026 209 LNEALKKEVERLKVATG 225 (332)
Q Consensus 209 lne~L~~EvqrLk~atg 225 (332)
....|.+|++|||..+-
T Consensus 191 kiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 191 KIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34557899999999774
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.51 E-value=1.6 Score=39.87 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=42.0
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELER---KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~---kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.|+..|.. ..+.++.||..|..+++.|+.++..|..||..|+.++..++..
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 4778888999999999999999999999999999988888765
No 33
>PRK00295 hypothetical protein; Provisional
Probab=92.24 E-value=1.1 Score=34.97 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.|.+||.++...+..+..|...|+.-+++...|..+-+.|..||..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888888777766666555555544443
No 34
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.98 E-value=7.7 Score=35.84 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=48.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 126 TVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 126 ~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
..|-+-.+ ..|...-+-+..+.+++.+...||.++..-..++..+..++..|++....|..+...++.
T Consensus 85 GFnV~~l~-~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~ 152 (190)
T PF05266_consen 85 GFNVKFLR-SRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKE 152 (190)
T ss_pred CCccHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777 667778888888888999999999888877666666666666666555555544444433
No 35
>PRK00736 hypothetical protein; Provisional
Probab=91.94 E-value=1.1 Score=34.94 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
..|.+||.++..++.-+..|...|+.-+++...|..+-+.|..|+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999988888888888777766655555544444433
No 36
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.88 E-value=1.1 Score=35.40 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+.|.+||.++...+.-+..|...|+.-+++...|..+-+.|+.||
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888877777777777766666555554444444433
No 37
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.87 E-value=4.4 Score=37.99 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
.-|..++..|+.||..|......+++++..|.+++..|+.++-..
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 568889999999999999999999999999999999998887333
No 38
>PRK04325 hypothetical protein; Provisional
Probab=91.78 E-value=1.1 Score=35.49 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
.|.+||.++...+..+..|...|+.-+++...|..+-+.|..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888888888888777766665555544444433
No 39
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.56 E-value=8.4 Score=33.27 Aligned_cols=90 Identities=16% Similarity=0.250 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALK 214 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~ 214 (332)
+++.-=.+=-.+|.|=+.+.+.|..++..+..++..|...+..|+.++..+..+...+..+...++.+..-....+..++
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566666666666666666666666666666666666666666666666666666555554445555556
Q ss_pred HHHHHHHHHh
Q 020026 215 KEVERLKVAT 224 (332)
Q Consensus 215 ~EvqrLk~at 224 (332)
+|+++|+..+
T Consensus 115 ee~~klk~~~ 124 (151)
T PF11559_consen 115 EELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 40
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.54 E-value=2.8 Score=33.03 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
+..||.||..|-.....|..+...|..+...+..|+..|+.+.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665556666666665555443
No 41
>PRK02119 hypothetical protein; Provisional
Probab=91.52 E-value=1.2 Score=35.22 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
..|.+||.++...+..+.+|...|+.-+++...|..+.+.|..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666666666666655555444444444433
No 42
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.46 E-value=7.1 Score=38.36 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 144 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 144 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
.....+..+.+.+||.+...|..|...|..+...++++-...-.+.+.++..+..+..+...-.+..+.+..++++|+..
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555666777777777777777777777666666666666666676666666555454456667777888888874
Q ss_pred h
Q 020026 224 T 224 (332)
Q Consensus 224 t 224 (332)
.
T Consensus 136 N 136 (314)
T PF04111_consen 136 N 136 (314)
T ss_dssp -
T ss_pred C
Confidence 4
No 43
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=2 Score=46.25 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.+..|+.+|+.|+.||..|...+..+++....|..+-..++.++
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666655555554433
No 44
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=91.36 E-value=3.7 Score=33.64 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+|+. +.+.+=++|-..|.-+.+-..+|+.+++.|....+.|..++......+..|..-|.++..+|...
T Consensus 11 ~rL~-~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLE-AAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 77777777777777777777999999999999999999999999999999999999999998654
No 45
>PRK11637 AmiB activator; Provisional
Probab=91.34 E-value=5.6 Score=39.96 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAARSKERKARYISELERKVQTLQTEATT 170 (332)
Q Consensus 136 iLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~ 170 (332)
+...+......+..+...+.+++.+...|+.+..+
T Consensus 182 L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 46
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.33 E-value=5.2 Score=32.42 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
-++.||.||++.-..++-|.-++.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEie 28 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIE 28 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666654433333333333
No 47
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.31 E-value=1.5 Score=34.85 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
+-..+..|+.|+..|..+...|..++..|..||..|+.
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444455555555543
No 48
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.27 E-value=1.3 Score=46.17 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQ-RDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lq-r~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+..|+.+-+.|..||.+|+++...+. +-...|..+..+|..+.+.+..+
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45666666666666666666553332 22344556666666555555433
No 49
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.24 E-value=1.1 Score=46.80 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
-+++||+++..|+.|...|.++...++++...|..||..|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999988888999888888888889988887776
No 50
>PRK04406 hypothetical protein; Provisional
Probab=91.21 E-value=1.3 Score=35.28 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENT 190 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~ 190 (332)
.|.+||.++..++.-+..|...|..-+++...|..+-+
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665555554444443333
No 51
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.14 E-value=12 Score=34.45 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
.+..+++++.++..|+.++..+..++...++....+...+...
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444333333
No 52
>PRK11637 AmiB activator; Provisional
Probab=91.05 E-value=7.8 Score=38.92 Aligned_cols=13 Identities=23% Similarity=0.504 Sum_probs=7.9
Q ss_pred ccccccccC-CCcc
Q 020026 302 RLQGLDING-RNSH 314 (332)
Q Consensus 302 ~~qgl~i~~-~~~~ 314 (332)
+..|+||.. .|+.
T Consensus 328 ~~~Gi~i~~~~g~~ 341 (428)
T PRK11637 328 RWKGMVIGASEGTE 341 (428)
T ss_pred CCCCEEeecCCCCe
Confidence 456888855 3443
No 53
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.73 E-value=5.1 Score=32.82 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
.-++.||.||++.-..++-|.-+|..|..++..|..|+..++
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888887766666666666555555555555555443
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.23 E-value=6.6 Score=36.70 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
-+.+++..+..|+.+|.+|..++..++.+...|..+|..+
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544444444444444
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.17 E-value=4.4 Score=36.69 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.++..|..+...+..-+..++-++..|..+++.+..++..++.+
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444443
No 56
>PRK00846 hypothetical protein; Provisional
Probab=90.09 E-value=2.1 Score=34.70 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..|.+||.++...+.-+..|...|+..++....|..+-+.|+.||..+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777777777777666665555555444444444333
No 57
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.74 E-value=3.7 Score=34.30 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTL--SAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~L--s~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
.+.+.++..++++...| ...+..|+-....+..+-+.+..+++.++.+..
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33455555555555555 555566666666666666666666766655533
No 58
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.71 E-value=10 Score=40.81 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhHHHHHHHHH
Q 020026 136 ILANRQSAARSKERKARYISELERKVQTLQTE------------------------ATTLSAQLTLFQRDTTDLSTENTE 191 (332)
Q Consensus 136 iLaNReSA~RSReRKkqyieeLE~kVq~Lq~E------------------------Ns~Ls~ql~~Lqr~~~~L~sEN~e 191 (332)
...|.+.--+--..+...|.+||.+++.++.+ |..|+.+|+.|+..+..|..+|-+
T Consensus 106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~e 185 (617)
T PF15070_consen 106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENME 185 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455544444446777888888887777644 556677777777777777777777
Q ss_pred HHHHHHHHHH
Q 020026 192 LKLRLQAMEQ 201 (332)
Q Consensus 192 LK~RLqaLEq 201 (332)
|+..|++-..
T Consensus 186 lt~~lq~Eq~ 195 (617)
T PF15070_consen 186 LTSALQSEQH 195 (617)
T ss_pred hhHHHHHHHH
Confidence 7766655433
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.69 E-value=11 Score=32.54 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 189 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN 189 (332)
+|.++..|+.++..|..+-..+..+...|+.+|
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.51 E-value=9 Score=39.69 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 203 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~ 203 (332)
||++ -+-++=+.-.++....++....||..++.+++++.++..++...+.+...+...+..+..+|..++.|.
T Consensus 38 ~~l~-q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLK-QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555 444444444445555667778899999999999999999999999999999999999988888888876
No 61
>PRK09039 hypothetical protein; Validated
Probab=88.55 E-value=18 Score=36.02 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
+.++..++.+.++...+|..|+++...|..+...|...|.+.|.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 62
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.54 E-value=21 Score=33.36 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
+|+.++..|..|...|...+..+++....+..+...|+.++..++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.37 E-value=15 Score=43.46 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARY-------------ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqy-------------ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
++++ .+-+.++.|.+.+.-+.++ +++|+.+++....+...+..++..++.+...+..+...|+.++
T Consensus 321 ~rL~-kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 321 EAES-DLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5666677777666544432 2233334444444444444444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 197 QAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 197 qaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
..+.+...........++..+++|..+-
T Consensus 400 aelqqel~elQ~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 400 ADYQQALDVQQTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443333334444455555555544
No 64
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.22 E-value=2.6 Score=34.10 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
-|.-|.-+|..|..+|.+|..++..++.....|..||..||..
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777653
No 65
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.21 E-value=8.1 Score=38.32 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
|-|+-+++-..++..|+.||..|.+.+..|++....|..+-..=..++..||.+..-.....+.|..|+.++|..
T Consensus 50 KQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 50 KQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677778888888888888888877777777776666677777777544444556666555555543
No 66
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=88.12 E-value=9.3 Score=31.61 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
....|..|+..|..+|..- -+.+....||..|+..+..+..-. ...-.+.+-.||..|+.+
T Consensus 25 e~~~L~eEI~~Lr~qve~n-Pevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVEHN-PEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 3355555555555555332 135567788888887766554333 224567788888888764
No 67
>PRK09039 hypothetical protein; Validated
Probab=88.11 E-value=13 Score=36.85 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
.+.-.+|..|+.++..|+.+++.|+......+.+..+.+.+|+.++
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666666553
No 68
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=87.89 E-value=9.2 Score=30.53 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTT--------DLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~--------~L~sEN~eLK~RLqaLEqq~~ 204 (332)
+-+.|..+..|..||-.|.-+|-.|..... .+..+|-+||..+..|..+.+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~ 60 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQ 60 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888877765544 456677777777766655533
No 69
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=87.88 E-value=0.022 Score=57.14 Aligned_cols=54 Identities=31% Similarity=0.350 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 020026 126 TVDPKRAKSRILANRQSAAR---SKERKARYISELERKVQTLQ-TEATTLSAQLTLFQR 180 (332)
Q Consensus 126 ~~DpKR~K~RiLaNReSA~R---SReRKkqyieeLE~kVq~Lq-~ENs~Ls~ql~~Lqr 180 (332)
..+.||.. |..+|+.+|.+ +|.||+.+...|..+|+.|+ .++..|..++..|+.
T Consensus 150 ~~~~~~~~-rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn 207 (395)
T KOG1414|consen 150 EPEEKRLL-RRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN 207 (395)
T ss_pred cchHHHHh-hccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence 34578888 99999999999 99999999999999999998 777666665555543
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.85 E-value=6.6 Score=41.86 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.++............-+..++.|+..+...+.++..|..+...+......|..|+..|+.+...
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777776667777777777777777777777776666666666666666666554433
No 71
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.59 E-value=10 Score=39.65 Aligned_cols=80 Identities=26% Similarity=0.283 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------HHHHH---------HH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA------------QLRDA---------LN 210 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~------------~Lrda---------ln 210 (332)
-.++.|+.++++|..||+.|+..++.|...+..|..+...+-.+|.++..+. .|+.+ |.
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELi 376 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELI 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3467788899999999999999999999999999888877777766664441 11111 56
Q ss_pred HHHHHHHHHHHHHhccCCCCC
Q 020026 211 EALKKEVERLKVATGEMMTPT 231 (332)
Q Consensus 211 e~L~~EvqrLk~atge~~~~~ 231 (332)
+.|.+|.++|+.-.+..-.+.
T Consensus 377 eelrkelehlr~~kl~~a~p~ 397 (502)
T KOG0982|consen 377 EELRKELEHLRRRKLVLANPV 397 (502)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 667788888887776554333
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.46 E-value=10 Score=33.37 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS---TENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~---sEN~eLK~RLqaLEqq 202 (332)
.-|..|..+++.|+.+...+..+|..+........ ..+..|..||+.||.+
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence 33444444444444444444444433332222111 2233455555555554
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.29 E-value=26 Score=32.85 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
-+.-+..|+.++..|+..|.+|...++..+.+...|..+...+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555444444444444
No 74
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.26 E-value=2.9 Score=35.95 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
|-.+|-.|+.....|++++..+..++..|..||+.|-++|+.|-.
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 345666778888889999999999999999999999999987754
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.07 E-value=17 Score=37.90 Aligned_cols=75 Identities=20% Similarity=0.130 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT-----DLSTENTELKLRLQAMEQQA 203 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~-----~L~sEN~eLK~RLqaLEqq~ 203 (332)
+|+.- |+.+-+..-+-.-+-=+.++.++|..++.|+.||+.|.++......... .+..||.+++.....++..+
T Consensus 26 ~k~~s-~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~ 104 (459)
T KOG0288|consen 26 EKAQS-RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELRE 104 (459)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 5444333222222223456788999999999999998877654332222 23345554444334444443
Q ss_pred H
Q 020026 204 Q 204 (332)
Q Consensus 204 ~ 204 (332)
+
T Consensus 105 q 105 (459)
T KOG0288|consen 105 Q 105 (459)
T ss_pred h
Confidence 3
No 76
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.98 E-value=14 Score=36.14 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRD----------ALNEALKKEVERL 220 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrd----------alne~L~~EvqrL 220 (332)
..+..|..++..+..++..++.++..++.+...+..+-.+++.+.+.+..+ ..+.. .....|+.++..|
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555554444444433332 11111 1344566777777
Q ss_pred HHHhccC
Q 020026 221 KVATGEM 227 (332)
Q Consensus 221 k~atge~ 227 (332)
...+|--
T Consensus 289 e~~~gw~ 295 (325)
T PF08317_consen 289 EKLTGWK 295 (325)
T ss_pred HHHHCcE
Confidence 7777643
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.94 E-value=14 Score=35.66 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..-+..|..+++.++....+|..++..+......|..+-..|+.++..++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777777777777777776666666555443
No 78
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.89 E-value=5.4 Score=32.47 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQR---DTTDLSTENTELKLRLQAMEQQA 203 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr---~~~~L~sEN~eLK~RLqaLEqq~ 203 (332)
|..+++.|+.+-..++.++..+.+ +...|..+-..||.++..++.+.
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666555 36667777777777777776553
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.86 E-value=13 Score=40.74 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 144 ARSKERKARYISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 144 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
-++|++=|+-+..||+++...+..-..|++||..
T Consensus 480 ~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 480 VQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666655555555555543
No 80
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.70 E-value=23 Score=31.60 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 164 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 164 Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
|+.+...|...+..|..+...+..|+..|...++.+..+
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444445555555555555555555444
No 81
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.36 E-value=12 Score=40.75 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRD---ALNEALKKEVERLKVAT 224 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrd---alne~L~~EvqrLk~at 224 (332)
+++..|..++..|+.+...|..++..+.+.+.....++..+..+|..++....-+. .++..|..+|+.||.-.
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 33788888888888888888888888888888888888888888877776655444 67778888888888755
No 82
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=86.35 E-value=17 Score=38.05 Aligned_cols=93 Identities=27% Similarity=0.343 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 132 AKSRILANRQSAARSK--ERKARYISELERKVQTLQ--------------TEATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 132 ~K~RiLaNReSA~RSR--eRKkqyieeLE~kVq~Lq--------------~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
-|.|+|+.--+|--|- .=|+.|-+++|+++..-+ .+...+..++..|-.+|..--.||..|...
T Consensus 371 EKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqa 450 (593)
T KOG4807|consen 371 EKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQA 450 (593)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777766665553 457889999998876443 444455566666666666666777777666
Q ss_pred HHHHHHHHH---------HH--HHHHHHHHHHHHHHHHHh
Q 020026 196 LQAMEQQAQ---------LR--DALNEALKKEVERLKVAT 224 (332)
Q Consensus 196 LqaLEqq~~---------Lr--dalne~L~~EvqrLk~at 224 (332)
+.+-++... ++ .-||..|.+||.+||..+
T Consensus 451 lEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtll 490 (593)
T KOG4807|consen 451 LEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLL 490 (593)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 644433311 11 126777889999999765
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.26 E-value=13 Score=40.60 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
+-+..+.++|+.|...|+.++...+.++..|+.|..+|+.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666666666666665555555555555555544
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.99 E-value=32 Score=32.62 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 163 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 163 ~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
.+..|+..++.++..|+.+...|...|..|..+|..++.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 344444444444444444444444455555544444443
No 85
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.96 E-value=0.12 Score=51.81 Aligned_cols=44 Identities=30% Similarity=0.499 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 128 DPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLS 172 (332)
Q Consensus 128 DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls 172 (332)
|++++| =+.+||.+|-++|.|||.++..|+.+...+..++..|.
T Consensus 283 ~~~~~~-~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRR-FLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhh-hhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 355644 58899999999999999999999999999888887776
No 86
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.91 E-value=24 Score=37.77 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
+.|+.+++.+...+..|..+...|..++..+.....+|...+.
T Consensus 188 e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 188 EQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 87
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.84 E-value=4.1 Score=35.87 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQL--TLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql--~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..+.+|+.+++.|+.|...|...+ ..|......|..|+..|..+|+.|...
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566777777777777777777766 556777888888888888888887653
No 88
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.76 E-value=18 Score=39.93 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+.||.+...|..|..+++.+-+.|-.+|..|+.||-.|..++
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444444443333
No 89
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=85.72 E-value=7.4 Score=33.93 Aligned_cols=54 Identities=26% Similarity=0.438 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
|..+-+.++++-..+..|..+|+.||..||.+..-.+.++.-|...|.-|..|.
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666777777777777777777777766666666666665555544
No 90
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.55 E-value=14 Score=36.42 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..-+.+++.+++.|+.|...|.+++..|+++...|..|-..|+.++..++.+
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777777777666666544
No 91
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.46 E-value=2.9 Score=30.46 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 164 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 164 Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
|+.+...|......|..++..|..||..|+..+..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555444443
No 92
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.45 E-value=14 Score=42.14 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+...|++||.+++.++.+...+.+........+..|..+...|+.+|+.-
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~ 495 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNK 495 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777776666666666544444555555555555555433
No 93
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.44 E-value=23 Score=30.62 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDL---STENTELKLRLQAMEQ 201 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L---~sEN~eLK~RLqaLEq 201 (332)
-|..++..|+.+-..+..+|..|...+..+ ..+...|+..++.++.
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333222 2333344444444433
No 94
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=85.35 E-value=7.5 Score=32.48 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+..++.+...+..++..++.++..+...|.+|-..+..+..+
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~ 46 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEK 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666655544
No 95
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.18 E-value=30 Score=37.89 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.2
Q ss_pred HHHHHH
Q 020026 216 EVERLK 221 (332)
Q Consensus 216 EvqrLk 221 (332)
++..++
T Consensus 491 ~~~~l~ 496 (1164)
T TIGR02169 491 ELAEAE 496 (1164)
T ss_pred HHHHHH
Confidence 333333
No 96
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.14 E-value=11 Score=41.40 Aligned_cols=66 Identities=30% Similarity=0.419 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL---TLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql---~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
-+|.-+..|+.-|-|-.+.+ ||.+-+.|.+.-.-|..++ +.|+.+...|++|-.+||.++-+||.+
T Consensus 128 svLteqVeaQgEKIrDLE~c--ie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETC--IEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHH--HHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 46778888888877776654 3334444444444444444 677888888999999999999888743
No 97
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.01 E-value=15 Score=31.65 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 146 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 146 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
|.+--|--.++|-.+...|.+-+..|.++...+...+..|.++-.++...|
T Consensus 24 slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 24 SLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444443333
No 98
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=84.93 E-value=1.5 Score=39.98 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 209 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdal 209 (332)
++++|.|+++--..|.-|+.+| .+...|..+++-||..+..|.++..+++.+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999988 345667788888888887777777665443
No 99
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.73 E-value=12 Score=36.50 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTL-------FQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~-------Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
.+++..|.+.++.|+..|..+++. ++.....|..||..|...+..+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555555444444 4444444444444444433333
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.64 E-value=33 Score=33.59 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=7.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 020026 179 QRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 179 qr~~~~L~sEN~eLK~RLqaL 199 (332)
+.+...+..+....+..+..+
T Consensus 215 r~eL~~~~~~i~~~k~~l~el 235 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAEL 235 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 101
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.64 E-value=22 Score=32.58 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q 020026 209 LNEALKKEVERLKVATGEMMT 229 (332)
Q Consensus 209 lne~L~~EvqrLk~atge~~~ 229 (332)
..+.++.++..++.++.-..+
T Consensus 136 ~i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777766554
No 102
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.61 E-value=20 Score=29.14 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 020026 138 ANRQSAARSKERKA------RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST---ENTELKLRLQAMEQQAQLRDA 208 (332)
Q Consensus 138 aNReSA~RSReRKk------qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s---EN~eLK~RLqaLEqq~~Lrda 208 (332)
.|.+..+.+=.++. ..+-+|-.+...|+.+...|.++...+.++...+.. +-.+|+.++..+..+..-.+.
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544442 445556666666666666666666666666555555 345565566555555443333
Q ss_pred HHHHHHHHHHHHH
Q 020026 209 LNEALKKEVERLK 221 (332)
Q Consensus 209 lne~L~~EvqrLk 221 (332)
....+..++..+-
T Consensus 89 ~~~~~e~~l~~~l 101 (108)
T PF02403_consen 89 QLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 103
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.57 E-value=25 Score=37.72 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
.-+.+++..+..|++|...+...+..+..+...|..||..|...|+.+.
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344445555555555555555555555555566666666655554444
No 104
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.35 E-value=11 Score=30.99 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 163 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 163 ~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.|++.+.+.-..|++|+.+...|..+|..|...++.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 105
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.97 E-value=18 Score=33.22 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
.-|..|..||.++...+..|..++
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444
No 106
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.94 E-value=26 Score=32.37 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 144 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 144 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
...+.+..+.+.+-+.....++.+...|..+|..|+++...+.
T Consensus 109 ~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 109 LEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433333
No 107
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.77 E-value=28 Score=40.03 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 141 QSAARSKERKARYISELERKV-QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 141 eSA~RSReRKkqyieeLE~kV-q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..++++..+..+.|.+++.+. +.++.+..++..++..|+++...+...+..|+..++.+
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555 45555555555555555555555555555555555444
No 108
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.73 E-value=33 Score=37.05 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=43.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERK-ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 140 ReSA~RSReRK-kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+.++.+.=.+| +.|+..++.+.+.+......|..++..-+.++..|..+|..||..+
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 5688888888888888888888888888888888888888888766
No 109
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.53 E-value=38 Score=34.52 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
...|+.++..|+.+...+..++..+..++..+..+..++..
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444555554444444444444433
No 110
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.22 E-value=8.2 Score=32.75 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+|=..+..|+.....|..++..|+.....|..||..|+..-
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888899999999999999999999885543
No 111
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.15 E-value=21 Score=34.06 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
||.+...+.++...|+.++...+.+.......+..|+.+.+.+.. ..+.|.+|-+.|+..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~-------EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD-------EYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHHHHHH
Confidence 444444444455555555554444444444555555444444322 3344444555555443
No 112
>PRK10698 phage shock protein PspA; Provisional
Probab=83.02 E-value=19 Score=33.79 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA 208 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrda 208 (332)
...+..|+..+...+.....|..++..|+..+..+.+....|+.|.+.-+-+.++.+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~ 155 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQ 155 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888889999999999999999998888888777665
No 113
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.69 E-value=16 Score=41.49 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHH-------
Q 020026 140 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT----------DLSTENTELKLRLQAMEQQ------- 202 (332)
Q Consensus 140 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~----------~L~sEN~eLK~RLqaLEqq------- 202 (332)
++.+.+-=+||..-+++|++....|..+...+..+|..|+.+.+ .|...|=+|..|+..||..
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 67777888899999999999999999999998888888887643 4445555555555544443
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHh
Q 020026 203 AQLRDALNE-------ALKKEVERLKVAT 224 (332)
Q Consensus 203 ~~Lrdalne-------~L~~EvqrLk~at 224 (332)
..+.+.|.| -|++||.-++.+.
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGAR 506 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 222222222 2557777665554
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.66 E-value=14 Score=41.50 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=4.5
Q ss_pred hhhhcCChhH
Q 020026 111 EAKKAMDPDK 120 (332)
Q Consensus 111 ~~Kk~m~~e~ 120 (332)
..+++|....
T Consensus 331 rRRq~leeqq 340 (1118)
T KOG1029|consen 331 RRRQALEEQQ 340 (1118)
T ss_pred HHHHHHHHHH
Confidence 3444554443
No 115
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.43 E-value=16 Score=35.66 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+++||.++..++.+...|..+.+.|......|..+-..|+.|...|+-.
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3344444455555555555555555555555555555555555555544
No 116
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.40 E-value=8.3 Score=37.95 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKE 216 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~E 216 (332)
.+.+.+++..+.+...+..++..|+.++.....+...|+..++.++........|.+.|..|
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 34444455555555556666666666666666777777666666655544333454444433
No 117
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=82.34 E-value=25 Score=28.50 Aligned_cols=70 Identities=14% Similarity=0.322 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
..++.+..+...+..+...++.+-..++..+..=..|...++..+-.||.+.. .+.+...+||.+||...
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888888888888899999999999988743 23366678999998754
No 118
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.15 E-value=20 Score=29.99 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLF--QRDTTDLSTENTELKLRLQAMEQQAQLRDALNEAL 213 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~L--qr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L 213 (332)
+.-++.|+.++.......+.++.++..| ..+...|..+-.+++-++..++.+.+--+++.+.|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666 66666666666666666666655544333333333
No 119
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.97 E-value=27 Score=28.64 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL-QAMEQQAQLRD 207 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL-qaLEqq~~Lrd 207 (332)
+|-..+......=..|..-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+ ..-+...+|.+
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56667777788888888999999999999999999999999999999999999999997766 23333455554
No 120
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.88 E-value=19 Score=39.11 Aligned_cols=84 Identities=21% Similarity=0.386 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 020026 138 ANRQSAARSKERK-ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL---KLRLQAMEQQAQLRDALNEAL 213 (332)
Q Consensus 138 aNReSA~RSReRK-kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL---K~RLqaLEqq~~Lrdalne~L 213 (332)
.+|..+.+.+..+ ...+.+|+.++..|+.++..|..++..+.++...-.-.++++ ..++..|+...+=.....+.|
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 345666777777777777777777766665544333333333 334555555544444556677
Q ss_pred HHHHHHHH
Q 020026 214 KKEVERLK 221 (332)
Q Consensus 214 ~~EvqrLk 221 (332)
+.++..|+
T Consensus 501 ~~~l~~l~ 508 (652)
T COG2433 501 ERKLAELR 508 (652)
T ss_pred HHHHHHHH
Confidence 77776666
No 121
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.63 E-value=22 Score=36.25 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 184 DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 184 ~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
.|..+-++|+.+|..++.+ ...+.+++..+-..++-++
T Consensus 70 ~l~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAE-------LDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCC
Confidence 3444555555555444433 3344455555555444443
No 122
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.29 E-value=25 Score=32.54 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA 208 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrda 208 (332)
-...+..|+..+..+......|..++..|++.+..+.+....|+.|.+....+..+...
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~ 155 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQ 155 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888888888888888888888888777666555544
No 123
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=80.89 E-value=36 Score=30.76 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 162 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 162 q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
..+..++..|..++..|+.++..|....+.+..++
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 45556666677676666666666665544444443
No 124
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=80.82 E-value=17 Score=28.02 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.|++|...|+.|......|+..+..++.+......|-..-..||..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777777766666665555555444444444443
No 125
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.38 E-value=9.7 Score=43.45 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDT--TDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~--~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
|..+++|+.--+.|..+..-|.+||..|..+. ..+++|+=.||+++..|+.+--.-....+.|..|...|-++.-.+
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777888887777776 788889999999999999986666688999999999999887554
No 126
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.27 E-value=39 Score=30.97 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
..+|+.++..|+.++..|..++..+...+..+...+.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666655555554444433
No 127
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.16 E-value=49 Score=33.86 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=10.0
Q ss_pred cccccccccccCCCCCCC
Q 020026 56 DLFCSYMDMDKIGSKPTG 73 (332)
Q Consensus 56 dl~~~~~d~~~~~s~~~~ 73 (332)
+++..|-+.-..-|.+.+
T Consensus 130 ~l~a~f~~~pP~ys~~~~ 147 (365)
T KOG2391|consen 130 ELIAAFSEDPPVYSRSLP 147 (365)
T ss_pred HHHHHhcCCCccccCCCC
Confidence 356666666666554443
No 128
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.10 E-value=48 Score=30.37 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 020026 170 TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ-LRDALNEALKKEVERLKVA 223 (332)
Q Consensus 170 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~-Lrdalne~L~~EvqrLk~a 223 (332)
.|..++..|+.+...|..+-.+|+.+++.++.... .+.........||+.|+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555544444421 2223334444555555543
No 129
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=80.07 E-value=4.5 Score=39.08 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhccC
Q 020026 213 LKKEVERLKVATGEM 227 (332)
Q Consensus 213 L~~EvqrLk~atge~ 227 (332)
|++|-++||...+-.
T Consensus 96 l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 96 LKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHhcCc
Confidence 555666666655543
No 130
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=79.86 E-value=14 Score=34.85 Aligned_cols=43 Identities=35% Similarity=0.318 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 181 DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 181 ~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
.+..+..||.+|+.++..++.+.. ..+.+++|-++|+...+..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCc
Confidence 344556666666665555544432 2245666777777766543
No 131
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.68 E-value=16 Score=38.85 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 020026 185 LSTENTELKLRLQAMEQQAQLRDALNEALK---KEVERLKVA 223 (332)
Q Consensus 185 L~sEN~eLK~RLqaLEqq~~Lrdalne~L~---~EvqrLk~a 223 (332)
|.+..+.++.+|..|..+ |. .+|+.|. +||+.||.+
T Consensus 478 L~TTr~NYE~QLs~MSEH--La-smNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 478 LETTRRNYEEQLSMMSEH--LA-SMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHHhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHhhc
Confidence 334444444455544332 22 3666665 789999854
No 132
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.42 E-value=55 Score=32.60 Aligned_cols=93 Identities=24% Similarity=0.301 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHH-HHHHHH
Q 020026 131 RAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE-------LKLRL-QAMEQQ 202 (332)
Q Consensus 131 R~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~e-------LK~RL-qaLEqq 202 (332)
|++.-.++|.+.--.+|.-=-+.++.||+.+.++.....+|...|..|++.++.|+.-.+. +.+|| +++|.-
T Consensus 70 rl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErn 149 (333)
T KOG1853|consen 70 RLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERN 149 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3333345555555555555566677888888888888888888777777777777654432 22333 344444
Q ss_pred HHHHHHH--HHHHHHHHHHHHHH
Q 020026 203 AQLRDAL--NEALKKEVERLKVA 223 (332)
Q Consensus 203 ~~Lrdal--ne~L~~EvqrLk~a 223 (332)
+.|-.-| .+.|-.+|+|||..
T Consensus 150 AfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 150 AFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 4443322 34455677777765
No 133
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.36 E-value=27 Score=37.37 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
-..++..+......+.+|...+|.++..||.+..--...|..|..+++++|...
T Consensus 139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 139 AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334444455667778888888888888888886655578888888888888644
No 134
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.21 E-value=40 Score=33.08 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+..-+.+++..++.++.+...|-.++..++.....+..++.+++..|..++.+
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777777777777777666666666666666666666665544
No 135
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.94 E-value=17 Score=38.24 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 164 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 164 Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
|-.+..+++.++..|.+++..|..||..|+.|.+.+.+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33333444444444444445555555555554444433
No 136
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.94 E-value=8.3 Score=37.00 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTT 183 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~ 183 (332)
+...|||.++..+..++..|..++..|+.++.
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888777777777766666554433
No 137
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.88 E-value=28 Score=34.79 Aligned_cols=45 Identities=40% Similarity=0.479 Sum_probs=36.3
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKV---QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 155 eeLE~kV---q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
++|..|. ...+.|++.|..++..+++.+..++.||.+|...|...
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444 34568889999999999999999999999999988655
No 138
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=78.80 E-value=10 Score=31.55 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDT 182 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~ 182 (332)
|+-|-..-+.+|..|+.++..|..++..|+.+.
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444444443
No 139
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=78.80 E-value=42 Score=35.94 Aligned_cols=88 Identities=24% Similarity=0.346 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALK 214 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~ 214 (332)
|+++.-..-.+.=..=.+.++.++..|+.|...+.++..++.....++..+..+-..|+.+.+.++.+.++-.++.+..+
T Consensus 28 ~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~ 107 (618)
T PF06419_consen 28 RLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFT 107 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333333333334445678999999999999999999999999999999999999999999999988887777555543
Q ss_pred ---HHHHHHHH
Q 020026 215 ---KEVERLKV 222 (332)
Q Consensus 215 ---~EvqrLk~ 222 (332)
.|+..|..
T Consensus 108 Ls~~E~~~L~~ 118 (618)
T PF06419_consen 108 LSEEEEDALTS 118 (618)
T ss_pred CCHHHHHHHhC
Confidence 45444443
No 140
>smart00338 BRLZ basic region leucin zipper.
Probab=78.77 E-value=24 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
..+..|+.+...|..+...|..++..|..|+..|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 141
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.61 E-value=30 Score=37.26 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA 208 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrda 208 (332)
+..+-+++|..+++.|..+...+..++..++..+..+..+..+.+.....++.+..++..
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k 384 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKK 384 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777777777666666666666666666666666666555443
No 142
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.29 E-value=30 Score=31.46 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR 206 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lr 206 (332)
..|+..+..+......|...+..+...+..+..+-..|+.+......+..+.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~ 152 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVN 152 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444433
No 143
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=78.11 E-value=38 Score=31.93 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
...+.+|..+.+.|+.|+..|+.++..+ ..+..||..|+.
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~ 107 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3334444444444444444444433322 244555555544
No 144
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=78.04 E-value=20 Score=35.62 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALK 214 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdalne~L~ 214 (332)
..|.-++..|+.+|.+||.+++.||.+ .-||+++.++.+
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888899999988888766 334544444443
No 145
>PF15294 Leu_zip: Leucine zipper
Probab=78.03 E-value=7.9 Score=38.08 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
|..++..|+.||..|+.++..++.++.....|+..|+..|..+.-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888888888888888776655
No 146
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.99 E-value=25 Score=35.10 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 189 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN 189 (332)
.++.|..|++.|+.||..|+.+...|..++..+..+.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE 197 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE 197 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH
Confidence 3455555555555555555555555554444443333
No 147
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.80 E-value=10 Score=31.82 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 173 AQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 173 ~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+++..+++++..|..+|..|+.++..|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444444444443
No 148
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=77.68 E-value=72 Score=31.44 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 143 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 143 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
|.+-+..=+..+++|.+|-....--.+-|+++|+.|-+
T Consensus 49 a~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~ 86 (277)
T PF15030_consen 49 ATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQ 86 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHH
Confidence 33333333333444444433333334445555544433
No 149
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.68 E-value=46 Score=30.96 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDT--TD--LSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~--~~--L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
.|...||..++.|+.+...++.++..+.+.- .. ...+.+.|..+-..+-....--+.-...|+.||..||...++
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888886664421 11 122222333333333222222223455666788777776554
No 150
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=77.62 E-value=3 Score=35.07 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 152 RYISELERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql-~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
....++|..+..+..|...|++.| ....+-...-..+...+..+...++.+..=.+.+.+.|+.++..|+...-.+.
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344566777777777777777654 22222112222233344455555555555455677788888888988665543
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.59 E-value=14 Score=35.24 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
-+-+|..++..|+.|+..|+.+++.++.+...+....++|-..|..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999888888777777777776555543
No 152
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.56 E-value=15 Score=32.44 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDT--TDLSTENTELKLRLQAME 200 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~--~~L~sEN~eLK~RLqaLE 200 (332)
|.+|..++..|..++..|..++..|.... ..|..+..+|+..+..|+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776665542 333444444444444443
No 153
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.28 E-value=11 Score=27.47 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
||+....|...-..|......|.+++..|.+|-..|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.06 E-value=62 Score=29.94 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 131 RAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 131 R~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
.++ +.+++-+.-..+=..-+..+..++.++..|+.++..|..++..++++...|.
T Consensus 73 eL~-k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 73 ELR-KQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5555655555555555555556666666666666666666655555555444
No 155
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.70 E-value=83 Score=31.21 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
+.|+..+..|+.+...|..+++.+..-...|......|+..
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e 187 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEE 187 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566665555555555444444444333333333
No 156
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=76.51 E-value=31 Score=30.13 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNE 211 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne 211 (332)
++.|-.....|+........++..|+.++.........-..+|+.|+..++......+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666777777777777777777778888777775443333
No 157
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.37 E-value=49 Score=37.92 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELER 159 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~ 159 (332)
++.+-|..|+..-+.|-+|..+|-.
T Consensus 284 el~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 284 ELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788887777777777776644
No 158
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=76.37 E-value=45 Score=29.59 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
++.....++..+..+..+..+|+.|+.....-..+...|...+........-++...+.|+.|-+.||.=.+.
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t 100 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence 3444445566666677777777777666555555666666666666666666777778888888888876654
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.26 E-value=88 Score=31.31 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020026 182 TTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atg 225 (332)
..-|.......|.+|+.|++.. ..++.|+++...++.
T Consensus 97 v~~lEgQl~s~Kkqie~Leqel-------kr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQEL-------KRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 3334444444444444444332 233455555555544
No 160
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=76.24 E-value=31 Score=37.03 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+.|+.+..+...++.||+.|..+|..++++...+..|+.+|+..|+++.+.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666777889999999999999999999999999999999887543
No 161
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.23 E-value=17 Score=27.96 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 184 DLSTENTELKLRLQAMEQQAQLRDALNEALKK 215 (332)
Q Consensus 184 ~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~ 215 (332)
.+..||.+|+..++.+++..+--=.++|....
T Consensus 18 tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456667777777766654322245665544
No 162
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=76.21 E-value=37 Score=34.58 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRD----TTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~----~~~L~sEN~eLK~RLqaLEqq 202 (332)
|..+++.|+.+-+.++.++..+.+. ...|..+-++||.+|..++.+
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 91 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAA 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666543221 345555666666666665544
No 163
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.74 E-value=18 Score=29.27 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
+.|.+||.++..=+.-+..|...|+..+.....+.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q 42 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQ 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776666666666666655544433333
No 164
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.73 E-value=16 Score=31.29 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
+|=.++..|+.....|..++..|+.....|..||..|+.
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888888888888844
No 165
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=75.41 E-value=16 Score=43.93 Aligned_cols=67 Identities=30% Similarity=0.303 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdalne~L~~EvqrLk~a 223 (332)
|+..+.-|+.++++|.+++.....+...|..||...|.|-+.+..+ .......++.|..||.+|+.-
T Consensus 1255 l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~e 1322 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEE 1322 (1822)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 3344445566777778888888888888888888888888888766 333334455555666666543
No 166
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=75.33 E-value=1.7 Score=36.07 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
.||+.|...+..|..++..|..++..|+.+...+......|+..|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 7999999999999999999999999998888888777777766553
No 167
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=75.33 E-value=11 Score=35.98 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
.-++....+.+.+++.+..|..|...++++++.|..|++.|..+++
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3444444555555666666777777777777777777777766553
No 168
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=75.29 E-value=82 Score=32.21 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020026 128 DPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTD 184 (332)
Q Consensus 128 DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~ 184 (332)
+|..+| +.+++|.. .- =...+-+|..+...|+.+...|+.+...+.++...
T Consensus 10 n~~~v~-~~l~~R~~---~~--~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 10 NPEAVK-EALAKRGF---PL--DVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred CHHHHH-HHHHhcCC---cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 55555521 00 13445556666666666666666666666555544
No 169
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.90 E-value=54 Score=37.82 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDAL 209 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql-~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdal 209 (332)
.+..++..+..++..|+..+..+.++. ..++.+...+..+-..|+.++..++.+ ..|++-+
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666 555555566666666666666666554 3444333
No 170
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=74.81 E-value=19 Score=34.70 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
.+|.+..++....++..-..=+.+...++.+...|+.||..|+.+ ++.|+.|+..|+....+.+
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~--------------v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQ--------------VEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhc
Confidence 355555555554444333332223333334444444555555443 3445555566666555544
No 171
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.70 E-value=27 Score=26.16 Aligned_cols=9 Identities=67% Similarity=0.881 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 020026 185 LSTENTELK 193 (332)
Q Consensus 185 L~sEN~eLK 193 (332)
|..+|..|+
T Consensus 38 L~~en~~L~ 46 (64)
T PF00170_consen 38 LESENEELK 46 (64)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 172
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.58 E-value=79 Score=29.96 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
+-+.-+..|+.++..|+..|..|..+|..++.
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 33444566666666666666666666655543
No 173
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=74.48 E-value=5.6 Score=30.97 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 167 EATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 167 ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
|...|+.+|..|+.++..|..||.-||.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555556666666666654
No 174
>PF15058 Speriolin_N: Speriolin N terminus
Probab=74.41 E-value=5.1 Score=37.74 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=27.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 179 QRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 179 qr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
..++..|+.||.+||+++.-|....+|+.+|.|+-..-++|-
T Consensus 11 rhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r~ 52 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQRQ 52 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 344556677888888877777777777766666655444443
No 175
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=74.33 E-value=48 Score=36.07 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDT 182 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~ 182 (332)
.+|+.+|..|+.++..|..+|..+++++
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~ 109 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREV 109 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444443
No 176
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.27 E-value=34 Score=31.45 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR 206 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lr 206 (332)
..+++=..++..|...|+-|+.++......+..|..++..|......+..+...+
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777777777777777777777777777766666554443333
No 177
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=74.20 E-value=37 Score=38.52 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
-|..|+.....+..||..||..+..+++|...|..-++.+
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~ 132 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGA 132 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444
No 178
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.96 E-value=56 Score=27.95 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 185 LSTENTELKLRLQAM 199 (332)
Q Consensus 185 L~sEN~eLK~RLqaL 199 (332)
|..+..+++.|+..|
T Consensus 103 le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 103 LEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.90 E-value=84 Score=29.93 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 221 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk 221 (332)
.|+.+...++.++..|..+......+...|..+..++...+..|+....-++.....|+.++...+
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555566666666666677777666666666666665554333
No 180
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.78 E-value=43 Score=40.83 Aligned_cols=67 Identities=25% Similarity=0.366 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 136 iLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+.+-.+.|+++++-=+..+...|++++.|++|+.+|+..+..+.+....+..|..++..+++.+..+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3345678888888888888888888888888888888888888888888888888888777765543
No 181
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.70 E-value=71 Score=36.93 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=8.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 020026 179 QRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 179 qr~~~~L~sEN~eLK~RLqaLE 200 (332)
+.++..|..|-.+|+..+...+
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k 835 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLK 835 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333333
No 182
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.68 E-value=61 Score=32.54 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=12.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
..|+++...|.+|++.|..+|.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3345555666666666655554
No 183
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.54 E-value=31 Score=33.44 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTT----DLSTENTELKL 194 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~----~L~sEN~eLK~ 194 (332)
.+..|..||.+|++++..++.+.. .+..||..||.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777666655532222 25566666544
No 184
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.41 E-value=34 Score=41.65 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
-|.+||..+......+..+..++..++.....|..+........+.+.-+....+..+.+|..|++.|+..+
T Consensus 1612 di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l 1683 (1930)
T KOG0161|consen 1612 DINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKL 1683 (1930)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555555555554444444444444444333333333333333334444444444444433
No 185
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.95 E-value=48 Score=32.82 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA-------------LNEALKKEVER 219 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrda-------------lne~L~~Evqr 219 (332)
++..|..++..+..++.....++..++.+...+...-...+.+.+.++.+ |+++ ....|++.+..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~--I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTE--IAEAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555544444444433333222 1111 34446666666
Q ss_pred HHHHhccC
Q 020026 220 LKVATGEM 227 (332)
Q Consensus 220 Lk~atge~ 227 (332)
|...+|--
T Consensus 283 Le~l~g~~ 290 (312)
T smart00787 283 LQSLTGWK 290 (312)
T ss_pred HHHHhCCe
Confidence 66766643
No 186
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.79 E-value=32 Score=38.74 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+|.++|-..++.|...+..|-.+++.+++....|..||.+|+..++..
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666555443
No 187
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.57 E-value=31 Score=33.57 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCC
Q 020026 211 EALKKEVERLKVATGEMMTPTDTYNL 236 (332)
Q Consensus 211 e~L~~EvqrLk~atge~~~~~~~f~~ 236 (332)
.++..+++.|++.+|.++-.|.|..-
T Consensus 92 ~~ie~~l~~l~~~aG~v~V~G~Gl~I 117 (247)
T COG3879 92 AALEDRLEKLRMLAGSVPVTGPGLVI 117 (247)
T ss_pred HHHHHHHHHHHHHhccCCCcCCcEEE
Confidence 44555789999999988754443333
No 188
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=72.21 E-value=41 Score=29.61 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
...+.|+.+++.|..++..+..+|..|+..+..|..+-..+..+|......
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777666666666554433
No 189
>PRK02224 chromosome segregation protein; Provisional
Probab=71.96 E-value=80 Score=34.36 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQL 175 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql 175 (332)
++..|+.+...|...+
T Consensus 538 ~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 538 RAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 190
>PLN02678 seryl-tRNA synthetase
Probab=71.92 E-value=84 Score=32.75 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHH
Q 020026 128 DPKRAKSRILANRQSAARSKERKARYISEL-------ERKVQTLQTEATTLSAQLTLFQR---DTTDLSTENTELKLRLQ 197 (332)
Q Consensus 128 DpKR~K~RiLaNReSA~RSReRKkqyieeL-------E~kVq~Lq~ENs~Ls~ql~~Lqr---~~~~L~sEN~eLK~RLq 197 (332)
++..++ +.+++|-.. -+ -...+-+| ..++..|+.+.+.++.++..+.+ +...|..+-++||.++.
T Consensus 14 ~~~~v~-~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~ 88 (448)
T PLN02678 14 DPELIR-ESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEIT 88 (448)
T ss_pred CHHHHH-HHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence 455666 666666421 00 12333333 44445555555555555543221 22234444445555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 020026 198 AMEQQAQLRDALNEALKKEVERLKVATGEMMT 229 (332)
Q Consensus 198 aLEqq~~Lrdalne~L~~EvqrLk~atge~~~ 229 (332)
.++ .....+.+++..+-..++-++.
T Consensus 89 ~le-------~~~~~~~~~l~~~~~~iPNi~~ 113 (448)
T PLN02678 89 EKE-------AEVQEAKAALDAKLKTIGNLVH 113 (448)
T ss_pred HHH-------HHHHHHHHHHHHHHHhCCCCCC
Confidence 443 3344455666666555555543
No 191
>PF15294 Leu_zip: Leucine zipper
Probab=71.89 E-value=18 Score=35.59 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=41.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
.+|.++...|..||..||.||..++.++-..--....|...+..|+...|..
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~ 179 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQ 179 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4588899999999999999999999997765446677777888888765544
No 192
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=71.25 E-value=78 Score=28.45 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 020026 141 QSAARSKERKARYISELER-------KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ--AQLRDALNE 211 (332)
Q Consensus 141 eSA~RSReRKkqyieeLE~-------kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq--~~Lrdalne 211 (332)
+.|...=.||+..++.|.. ++..++.+...+..++..+++++..+. ..+|..+...+.. ..++..+.+
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~~k~~d~k~~l~~ 214 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEKEKVKDFKSMLEE 214 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544444433 344555555555555555555444443 2244444444333 334444555
Q ss_pred HHHHHHH
Q 020026 212 ALKKEVE 218 (332)
Q Consensus 212 ~L~~Evq 218 (332)
.+...|.
T Consensus 215 ~~~~~i~ 221 (236)
T PF09325_consen 215 YAESQIE 221 (236)
T ss_pred HHHHHHH
Confidence 5544443
No 193
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.11 E-value=97 Score=35.79 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 138 ANRQSAARSKER----KARY------ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR 206 (332)
Q Consensus 138 aNReSA~RSReR----Kkqy------ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lr 206 (332)
+++..|+|.|.- +.+| ..+...+++.|..+...+..++..++..+......+..|+.+++.++...+.+
T Consensus 417 K~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~ 495 (1041)
T KOG0243|consen 417 KRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNK 495 (1041)
T ss_pred HHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667766532 3334 34455667777777778888888888888777888888888888777664433
No 194
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.99 E-value=1.4e+02 Score=31.47 Aligned_cols=83 Identities=27% Similarity=0.328 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHH-
Q 020026 142 SAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL--------------STENTELKLRLQAMEQQAQLR- 206 (332)
Q Consensus 142 SA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L--------------~sEN~eLK~RLqaLEqq~~Lr- 206 (332)
.|++-..+-++.+..|..+.+.|+++..+|.++-..|..+...| ..+-..|+.+-..+|++++.-
T Consensus 127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la 206 (499)
T COG4372 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA 206 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555444444444333 444444555555556554321
Q ss_pred --HHHHHHHHHHHHHHHHHh
Q 020026 207 --DALNEALKKEVERLKVAT 224 (332)
Q Consensus 207 --dalne~L~~EvqrLk~at 224 (332)
.--.+.+++|+.++..+.
T Consensus 207 ~r~~a~q~r~~ela~r~aa~ 226 (499)
T COG4372 207 TRANAAQARTEELARRAAAA 226 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 112344555665555444
No 195
>PRK02119 hypothetical protein; Provisional
Probab=70.82 E-value=42 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
+..+|.++..|+...+-....|..|..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQ 30 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777666666665543
No 196
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.55 E-value=89 Score=28.83 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 145 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 145 RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.-..+++..+..|+.+++.+..++...++++..++.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555544433
No 197
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=70.52 E-value=21 Score=26.93 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+..++..++++...+..+|..|+.+++.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444555555555555444
No 198
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=70.51 E-value=25 Score=32.26 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020026 186 STENTEL 192 (332)
Q Consensus 186 ~sEN~eL 192 (332)
..+|..|
T Consensus 117 ~~~~e~L 123 (161)
T TIGR02894 117 QKRNEEL 123 (161)
T ss_pred HHHHHHH
Confidence 3333333
No 199
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.21 E-value=1.1e+02 Score=35.47 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 143 AARSKERKARYISELERKVQTLQ 165 (332)
Q Consensus 143 A~RSReRKkqyieeLE~kVq~Lq 165 (332)
.+..+.+++..|.+|+.++..+.
T Consensus 848 l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 848 NRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333
No 200
>PRK04406 hypothetical protein; Provisional
Probab=70.18 E-value=47 Score=26.51 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
++.||.++..|+...+-+...|..|...
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~ 33 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDA 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777766666666443
No 201
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=70.09 E-value=25 Score=27.26 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 167 EATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 167 ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
....+..++..++++...+..||..|+.++..+.....+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 344555566666666666677777777766666544443
No 202
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=69.86 E-value=25 Score=34.90 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
.|+=.||-+.+....|...|..|+..|+.++..+...-++.|..|+.|.
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666677777777777777777777666666666666665555543
No 203
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=69.71 E-value=47 Score=31.21 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~ 176 (332)
|+.+|+.|+.++..+.++|.
T Consensus 91 l~ek~q~l~~t~s~veaEik 110 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIK 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 204
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.69 E-value=58 Score=32.73 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=21.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERK-ARYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 140 ReSA~RSReRK-kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
|.+..+...|+ +.-+.-+..+++.|+.+|..|+..-..++
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443443 33444555667777777777766554443
No 205
>PRK14127 cell division protein GpsB; Provisional
Probab=69.51 E-value=36 Score=29.20 Aligned_cols=36 Identities=11% Similarity=0.352 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST 187 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s 187 (332)
.|++++...++.|..|+..|..++..|+.+...+..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666555544444443
No 206
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.38 E-value=19 Score=34.59 Aligned_cols=45 Identities=13% Similarity=0.324 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+....++..|+.|...+..++..|+.+...|.+.|-.|=+++.-|
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999998888888888888888888888886555443
No 207
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=69.32 E-value=93 Score=28.55 Aligned_cols=91 Identities=23% Similarity=0.306 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHH
Q 020026 131 RAKSRILANRQSAARSKE-----RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST----ENTELKLRLQAMEQ 201 (332)
Q Consensus 131 R~K~RiLaNReSA~RSRe-----RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s----EN~eLK~RLqaLEq 201 (332)
|.| +-++-+..|+.+|. |=....++||.-+.=...|...++.+|....++..-|.. --+++|.-|.+++.
T Consensus 45 rkK-meVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 45 RKK-MEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 56667777777763 223344667766666777888888888777777655543 45667777777776
Q ss_pred HHHHHHHHHHHHH---HHHHHHHH
Q 020026 202 QAQLRDALNEALK---KEVERLKV 222 (332)
Q Consensus 202 q~~Lrdalne~L~---~EvqrLk~ 222 (332)
..+-+..|...|. .|-+++|+
T Consensus 124 knkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 124 KNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554444444433 34455554
No 208
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=68.60 E-value=1.1e+02 Score=32.24 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
+.+-.+.-.|..|...+.+.+...+-+...|..||.+|..+
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555444
No 209
>PLN02678 seryl-tRNA synthetase
Probab=68.57 E-value=31 Score=35.87 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLST 187 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s 187 (332)
.++-.|..+-.+|..++..|+.+...+..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk 61 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNK 61 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333
No 210
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=68.49 E-value=78 Score=27.71 Aligned_cols=15 Identities=47% Similarity=0.364 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhccCC
Q 020026 214 KKEVERLKVATGEMM 228 (332)
Q Consensus 214 ~~EvqrLk~atge~~ 228 (332)
++--.||+..-..++
T Consensus 101 ~kyk~rLk~LG~eVS 115 (136)
T PF04871_consen 101 KKYKERLKELGEEVS 115 (136)
T ss_pred HHHHHHHHHcCCCcc
Confidence 334467776555554
No 211
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.38 E-value=70 Score=37.44 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 143 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 222 (332)
Q Consensus 143 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~ 222 (332)
...+..+++.-+.+|+.++..+..|..+.+..+..+......|...-..+++++..+.....-...-+++|.+ +.||+.
T Consensus 533 ~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a-l~r~ke 611 (1293)
T KOG0996|consen 533 SSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA-LMRLKE 611 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHH
Confidence 3444566666777777777777777777777777766666666666667777776666655544456666654 556665
Q ss_pred HhccCC
Q 020026 223 ATGEMM 228 (332)
Q Consensus 223 atge~~ 228 (332)
.|.++
T Consensus 612 -sG~i~ 616 (1293)
T KOG0996|consen 612 -SGRIP 616 (1293)
T ss_pred -cCCCC
Confidence 34444
No 212
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=68.30 E-value=1.5e+02 Score=31.15 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 170 TLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 170 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.+.++-..|+.+...|..+-..|..++++
T Consensus 141 r~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 141 RLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443333
No 213
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.28 E-value=26 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
+.+.+.+|+.++..|+.+|..|..++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777666655
No 214
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.13 E-value=30 Score=35.46 Aligned_cols=49 Identities=24% Similarity=0.315 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 148 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 148 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.|-|.++..||.-+.++..||..|..++..+.+++.+.+.|+.+|-..|
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 4566677888888999999999999999999999888888877774443
No 215
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=68.11 E-value=45 Score=35.36 Aligned_cols=16 Identities=50% Similarity=0.640 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 020026 209 LNEALKKEVERLKVAT 224 (332)
Q Consensus 209 lne~L~~EvqrLk~at 224 (332)
.|+.+++|++.||++.
T Consensus 303 e~e~~rkelE~lR~~L 318 (575)
T KOG4403|consen 303 ENETSRKELEQLRVAL 318 (575)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444445555555544
No 216
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.04 E-value=1.8e+02 Score=33.64 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+++|..++....+...+..+++..+
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~ 648 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAE 648 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333
No 217
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.67 E-value=77 Score=34.18 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 148 ERKARYISELERKVQT-------LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 148 eRKkqyieeLE~kVq~-------Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
++|++-...++++... ++.+...+..++..++.++..|+++-..+++++..+.
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~ 253 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLR 253 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444443 4444444444455555555555555555555544443
No 218
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=67.66 E-value=38 Score=29.51 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
-..|+.-..=+.|-++|.++|+.|+-+...+..=|..|+.||.-||..
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777778889999999999999999999999999888777644
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.47 E-value=78 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSA 173 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ 173 (332)
+|.+++-.++..|+.+.+.+.+
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~ 375 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEA 375 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHH
Confidence 5555555555554444444433
No 220
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=67.37 E-value=12 Score=39.37 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 145 RSKERKARYISELERKVQT----LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 145 RSReRKkqyieeLE~kVq~----Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
|-|.|+|+--.|=.+|.+. |+.....-.++...|+++...|+.+|..|-.+|+.+
T Consensus 254 RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 254 RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5567777766666666543 455555555556666677777777777766666544
No 221
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.99 E-value=1.4e+02 Score=30.11 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 141 QSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 141 eSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
++++|-....+..+.++|...+.-+........+-..++.....|..||--|+++|...-.
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655556666666666666555555555555556666666666666666666544433
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.82 E-value=62 Score=34.26 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
+|..++.++....++..++..++++...+..+|..|..
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333334444444444444444444444433
No 223
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.64 E-value=1.2e+02 Score=33.40 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLF---QRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~L---qr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
....|+.||-.|..+|+.| |-++.+|..|++.|...+..|..|
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666554 345677777777777766666555
No 224
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.43 E-value=1.6e+02 Score=33.77 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.3
Q ss_pred HhhhcC
Q 020026 293 EMLQQD 298 (332)
Q Consensus 293 ~~~~~~ 298 (332)
++..-|
T Consensus 597 dli~~d 602 (1163)
T COG1196 597 DLIDFD 602 (1163)
T ss_pred HHhcCC
Confidence 333333
No 225
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.33 E-value=1.3e+02 Score=29.04 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 020026 132 AKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ--AQLRDAL 209 (332)
Q Consensus 132 ~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq--~~Lrdal 209 (332)
+| =.++-|+.++-.-++|.+|+..+......+.+|...+..++... |+.+|..++-.+.+ .-++.++
T Consensus 151 lK-~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~ 219 (243)
T cd07666 151 LM-GVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAF 219 (243)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 56777887777777777777776554455555555555555433 55566666666555 4466666
Q ss_pred HHHHHHHH
Q 020026 210 NEALKKEV 217 (332)
Q Consensus 210 ne~L~~Ev 217 (332)
.+.+..-|
T Consensus 220 ~~yae~~i 227 (243)
T cd07666 220 TDMAENNI 227 (243)
T ss_pred HHHHHHHH
Confidence 66655444
No 226
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.29 E-value=88 Score=31.11 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=10.2
Q ss_pred cccCChHHHHHHHHHHH
Q 020026 124 LWTVDPKRAKSRILANR 140 (332)
Q Consensus 124 la~~DpKR~K~RiLaNR 140 (332)
|+.+++|-.| =|+.|-
T Consensus 86 l~evEekyrk-AMv~na 101 (302)
T PF09738_consen 86 LAEVEEKYRK-AMVSNA 101 (302)
T ss_pred HHHHHHHHHH-HHHHHh
Confidence 3344677777 788774
No 227
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.09 E-value=72 Score=31.34 Aligned_cols=43 Identities=9% Similarity=0.345 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
++.+++.|...+..+..++..++.++..+..+-..|+..|..+
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 228
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=65.85 E-value=37 Score=31.62 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
...+|..|++....+...|-++..-+..|+.+
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~e 204 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQE 204 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666665555555543
No 229
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=65.77 E-value=11 Score=31.11 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
|+++++.|..+++.++.+|..|..+|..+.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888899999999988888888876553
No 230
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=65.62 E-value=26 Score=31.35 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=4.8
Q ss_pred cCChhHhhhc
Q 020026 115 AMDPDKLAEL 124 (332)
Q Consensus 115 ~m~~e~LaEl 124 (332)
-++++.|..+
T Consensus 23 ~lsDd~Lvsm 32 (135)
T KOG4196|consen 23 RLSDDELVSM 32 (135)
T ss_pred CcCHHHHHHh
Confidence 3445555444
No 231
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.42 E-value=53 Score=28.81 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 184 DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 184 ~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
.|..-.++|.+||+.+..+..-..++.+.+++||..++..+
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 44455555556665555443333344444444444444433
No 232
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.31 E-value=93 Score=27.08 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ--QAQLRDALNEALKKEVERL 220 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq--q~~Lrdalne~L~~EvqrL 220 (332)
+|..|+.+...+..++..+..++..+ +..++..+..++. ...++..+.+.+...+..-
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~ 205 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDLKAALKEFARLQVQYA 205 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333222 2233334444433 2344545555555444433
No 233
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.14 E-value=1.4e+02 Score=30.48 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.4
Q ss_pred hHHhhh
Q 020026 291 FSEMLQ 296 (332)
Q Consensus 291 ~~~~~~ 296 (332)
+.+++.
T Consensus 518 ~~~~l~ 523 (562)
T PHA02562 518 LLSILD 523 (562)
T ss_pred HHHHHH
Confidence 334443
No 234
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.13 E-value=1e+02 Score=35.72 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+.+++++|+..+-.|+.||..|-.+|..|.
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345566777777777777777776665554
No 235
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=65.01 E-value=83 Score=28.54 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 144 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 144 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
...++.-++.|+.|..++..-+.+...+...|..++. .|....+.|+.....+.....-..+..+.|+.+|+.++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3445555577777777777777777777777766654 3555666666665555444333345667777777777654
Q ss_pred h
Q 020026 224 T 224 (332)
Q Consensus 224 t 224 (332)
.
T Consensus 179 I 179 (184)
T PF05791_consen 179 I 179 (184)
T ss_dssp G
T ss_pred H
Confidence 3
No 236
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=64.87 E-value=1.6e+02 Score=33.98 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYI---SELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyi---eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
++++ ++-.+|.-..+.+..++... ..+..+...|+.+...+..++..+..+
T Consensus 785 ~~l~-~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 838 (1201)
T PF12128_consen 785 KELK-RIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQE 838 (1201)
T ss_pred HHHH-HHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556 77777888888887777653 234444555555555555555544443
No 237
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.78 E-value=59 Score=29.84 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020026 145 RSKERKARYISELERKVQTLQ 165 (332)
Q Consensus 145 RSReRKkqyieeLE~kVq~Lq 165 (332)
..-++...-+.+|+.++..+.
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 238
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.67 E-value=1.3e+02 Score=29.01 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=56.2
Q ss_pred hhhcCChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHH
Q 020026 112 AKKAMDPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLT------LFQRDTTDL 185 (332)
Q Consensus 112 ~Kk~m~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~------~Lqr~~~~L 185 (332)
.-|+.+.+-|..-+..||+-.. | ...+..=...|++|..+|..++.|...|..... .-+.....|
T Consensus 98 KtKafSkeGL~~~~k~dp~e~e-k--------~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l 168 (233)
T PF04065_consen 98 KTKAFSKEGLMAASKLDPKEKE-K--------EEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEEL 168 (233)
T ss_pred cccccchhhhhcccccCcchHH-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHH
Confidence 3467888888765667887665 2 345666678889999999999998888876542 233444455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 186 STENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 186 ~sEN~eLK~RLqaLEqq~~L 205 (332)
..-....+..+..||.-.++
T Consensus 169 ~~~ierhk~Hi~kLE~lLR~ 188 (233)
T PF04065_consen 169 ESRIERHKFHIEKLELLLRL 188 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666655443
No 239
>PHA03155 hypothetical protein; Provisional
Probab=64.59 E-value=8.7 Score=33.46 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
-+|+|+.+++.|+.||..|..+|.
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999998884
No 240
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=64.58 E-value=66 Score=31.72 Aligned_cols=66 Identities=17% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKE 216 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~E 216 (332)
++-|+.+..++..|+.||..+..+..........+..|+..+...+..+..+..--+.|-.+|..|
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 241
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.42 E-value=1.8e+02 Score=30.52 Aligned_cols=65 Identities=8% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 138 ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 138 aNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.++...++-=.++..-|.+-..+.+.|+.+...+..++..+..+......++.+++.+|..++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 45566666666666677777777777777777777777777777777777777777777766655
No 242
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=64.41 E-value=1.3e+02 Score=28.42 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
+.+..-+.....|...+...+.+-..+.....+.+..+++|+.+..-..+....|...|..|......
T Consensus 119 R~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 119 RLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333334444444444444555555555666666666666666444445556677777777776554
No 243
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=64.38 E-value=89 Score=26.50 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
|++-.+..+... |+.-+-.--..+-.....+..+++.+++++..|..+|..|+.++..|+..
T Consensus 25 ~~l~~~l~~~l~------~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 25 RILTLVLLALLA------LFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666666666543 33333333334444555566666677777777788888888777777666
No 244
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.36 E-value=27 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
+.+||.++..+.....+++.++..+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i 26 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEI 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444333
No 245
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.31 E-value=98 Score=26.96 Aligned_cols=63 Identities=10% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSA-------QLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~-------ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
+++.-=..+-.-|.++..+++.++..+.....+...|.. ++..++.++..+..+-..++.+..
T Consensus 100 ~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 100 RYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566667777777777777777777766666643 455555555444444444444433
No 246
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=64.27 E-value=11 Score=33.01 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
-.-+++|+.+++.|+.||..|..+|.
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999884
No 247
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.25 E-value=70 Score=25.28 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
..|..|-.+-+.|....-.+...|..|...+..+..+...|+.++..
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 248
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=64.24 E-value=98 Score=31.31 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
+-.++|+.+.+.|+..+.....+++.+.+-
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~l 33 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKL 33 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888877776554433
No 249
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=63.80 E-value=95 Score=26.62 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=5.0
Q ss_pred cCChhHhhhc
Q 020026 115 AMDPDKLAEL 124 (332)
Q Consensus 115 ~m~~e~LaEl 124 (332)
.++.++|.+|
T Consensus 3 ~lS~~eL~~L 12 (150)
T PF07200_consen 3 DLSTEELQEL 12 (150)
T ss_dssp S-TTHHHHHH
T ss_pred cCCHHHHHHH
Confidence 3455556555
No 250
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=63.62 E-value=35 Score=29.85 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
.|..-+++|+.++..|+....+|..+...+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l 96 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKL 96 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444444444333
No 251
>PLN02320 seryl-tRNA synthetase
Probab=63.60 E-value=1.8e+02 Score=31.05 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 184 DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 184 ~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
.|..+-++||.+|..+|.+. ..+.+++..+-..++-++
T Consensus 134 ~l~~~~k~lk~~i~~le~~~-------~~~~~~l~~~~l~iPN~~ 171 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDL-------VKLTDELQLEAQSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCCC
Confidence 44455555655555554442 333445555555555444
No 252
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=63.43 E-value=92 Score=30.71 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
.+.+.|+.+...+...+..+++. ..+.....++..|.+.+..+.....+..+-.++++.+++..
T Consensus 175 ~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~ 238 (264)
T PF07246_consen 175 HEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRND 238 (264)
T ss_pred HHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555543333322 22233333333333333333222223333334444444443
No 253
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=63.38 E-value=1.1e+02 Score=27.29 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSA---QLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALK 214 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~---ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~ 214 (332)
..|+.++.....+...|.. -+..|+.++..|..+|...+...++--.+..+..++..+|.
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 23445555555556666333333332233333334444444
No 254
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.16 E-value=54 Score=25.40 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
||.++..|+...+-+...|..|..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~ 25 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND 25 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666655555543
No 255
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.89 E-value=92 Score=28.90 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 209 LNEALKKEVERLKVA 223 (332)
Q Consensus 209 lne~L~~EvqrLk~a 223 (332)
.+..|..||++|...
T Consensus 172 ~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666666554
No 256
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.77 E-value=26 Score=29.03 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 209 LNEALKKEVERLKVA 223 (332)
Q Consensus 209 lne~L~~EvqrLk~a 223 (332)
.|-.|++|+.+|+.-
T Consensus 52 EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 52 ENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666653
No 257
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.64 E-value=43 Score=32.00 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
+..||+.++.-.....+|..+|..|+.+...|.-++.++..+|+.+.+
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566665555555566777777777777777766666666655533
No 258
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=62.55 E-value=1.3e+02 Score=30.38 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHH-HHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENT-----ELKLRLQAMEQQ-AQLR 206 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~-----eLK~RLqaLEqq-~~Lr 206 (332)
+|..++..|+.+|..|..++..+..++..+..+.. -++.-+.-|..+ ++||
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR 197 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIR 197 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33344444444444444444444444444433333 333344444333 5555
No 259
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.49 E-value=1.8e+02 Score=33.37 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 174 QLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 174 ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
|++.-+.....+..+|.+|...|..+..+
T Consensus 453 Qle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 453 QLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555666666655555444
No 260
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.19 E-value=1.9e+02 Score=32.42 Aligned_cols=92 Identities=26% Similarity=0.340 Sum_probs=60.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 020026 136 ILANRQSAAR-SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA----QLRDALN 210 (332)
Q Consensus 136 iLaNReSA~R-SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~----~Lrdaln 210 (332)
++.|.-...| .=+-|-.+|++|..+.+.|....+.-..++..++-....|..|-..++..-..+.+.. .-+....
T Consensus 591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e 670 (786)
T PF05483_consen 591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISE 670 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhH
Confidence 5555553333 3446677788888877777777777777777777777777777777766554443331 1223456
Q ss_pred HHHHHHHHHHHHHhccC
Q 020026 211 EALKKEVERLKVATGEM 227 (332)
Q Consensus 211 e~L~~EvqrLk~atge~ 227 (332)
+.|..||+.+|..+.++
T Consensus 671 ~~L~~EveK~k~~a~EA 687 (786)
T PF05483_consen 671 EELLGEVEKAKLTADEA 687 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67778888888877654
No 261
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.12 E-value=1e+02 Score=34.29 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
.+..++.|......|+.+|..-......|..+|..||.++.+-..+...-+.....|..|++.++....+
T Consensus 585 k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 585 KEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445566777777888888777777888999999999988776666555567777888888777765443
No 262
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=61.98 E-value=2.5e+02 Score=32.65 Aligned_cols=67 Identities=28% Similarity=0.331 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL-----TLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql-----~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
|=|.||+--.-+.++..+|-++.|.+-++|......|..=+ ..+++-...+..|-++||..++....
T Consensus 1032 ~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~ 1103 (1189)
T KOG1265|consen 1032 RELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRM 1103 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999988888776533 33344445667778888877755433
No 263
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.91 E-value=46 Score=27.05 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020026 203 AQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 203 ~~Lrdalne~L~~EvqrLk~a 223 (332)
.++|....+.+..++..|+..
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~k 83 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKK 83 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666553
No 264
>PRK04863 mukB cell division protein MukB; Provisional
Probab=61.88 E-value=2e+02 Score=34.51 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..+..+.+++.++..++.+...|..++..++.....+..+...+...++.++..
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555544444433
No 265
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=61.84 E-value=1.6e+02 Score=32.15 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 143 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 143 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
+.+-|..=++-|++|..++..|..++..+..+++.-.........+-.+++.+
T Consensus 77 ~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 77 EARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444456667777777777776666666655555544444444444433
No 266
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=61.82 E-value=56 Score=26.29 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHhc
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR----DA---LNEALKKEVERLKVATG 225 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lr----da---lne~L~~EvqrLk~atg 225 (332)
+-.=+..+|.+++.++.|+-+|++++..+.++.-.. || ..-.|.+|...++.+..
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 334467899999999999999999998887763321 11 22234455665555543
No 267
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.81 E-value=2.1e+02 Score=33.67 Aligned_cols=10 Identities=0% Similarity=-0.140 Sum_probs=4.5
Q ss_pred ccccccccCC
Q 020026 23 SQSEVQYRIP 32 (332)
Q Consensus 23 a~se~~~~~p 32 (332)
.+-.+-|.+.
T Consensus 84 ~y~~~e~~~~ 93 (1353)
T TIGR02680 84 GYLWLEFGRV 93 (1353)
T ss_pred eeEEEEeecc
Confidence 3334445554
No 268
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.74 E-value=68 Score=34.62 Aligned_cols=49 Identities=24% Similarity=0.402 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+..+++|+.++..+..+...|...+..+..+......++.+|...+...
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666665554433
No 269
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.64 E-value=1.5e+02 Score=32.89 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.9
Q ss_pred cccCCCccccc
Q 020026 307 DINGRNSHLVK 317 (332)
Q Consensus 307 ~i~~~~~~~~~ 317 (332)
=|-|||++++|
T Consensus 727 IIHGkGtG~Lr 737 (771)
T TIGR01069 727 IIHGKGSGKLR 737 (771)
T ss_pred EEcCCChhHHH
Confidence 36677777554
No 270
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.37 E-value=98 Score=30.40 Aligned_cols=6 Identities=33% Similarity=0.352 Sum_probs=4.0
Q ss_pred CCCCcc
Q 020026 51 GGSEDD 56 (332)
Q Consensus 51 ~~~~dd 56 (332)
+++|+|
T Consensus 43 i~tE~d 48 (267)
T PF10234_consen 43 IDTEQD 48 (267)
T ss_pred CCcHHH
Confidence 566766
No 271
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=60.67 E-value=24 Score=37.16 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLR---DALNEALKKEVERLKV 222 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lr---dalne~L~~EvqrLk~ 222 (332)
+|-.+|..|+.+|.-|..++..+.-.|..++.||+-|+ +...+-|++.- +.....|-++|+.|..
T Consensus 47 ~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~--~Asv~IQaraeqeeEfisntLlkkiqal~k 114 (552)
T KOG2129|consen 47 SLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLL--LASVEIQARAEQEEEFISNTLLKKIQALFK 114 (552)
T ss_pred HHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhh--hhhhHHhhccchHHHHHHHHHHHHHHHhhc
Confidence 34444555666666666666666666666677777663 34444443321 2223344556666654
No 272
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=60.64 E-value=27 Score=36.19 Aligned_cols=65 Identities=23% Similarity=0.285 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 140 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
-++|+-.|+|-.+--...|..+..+..|...|++++....+....|..|+..||.-+..+|-..+
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 46677778888887788888888888999999999988888888999999999888877765533
No 273
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.63 E-value=1.5e+02 Score=32.90 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=6.3
Q ss_pred cccCCCccccc
Q 020026 307 DINGRNSHLVK 317 (332)
Q Consensus 307 ~i~~~~~~~~~ 317 (332)
=|-|+|++++|
T Consensus 738 IIHGkGtG~Lr 748 (782)
T PRK00409 738 IIHGKGTGKLR 748 (782)
T ss_pred EEcCCChhHHH
Confidence 35667766544
No 274
>PRK02793 phi X174 lysis protein; Provisional
Probab=60.60 E-value=82 Score=24.83 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.++|.++..|+...+-....|..|..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777776666666665555533
No 275
>PHA03162 hypothetical protein; Provisional
Probab=60.55 E-value=5.9 Score=35.28 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
|+.-+++|+.+++.|+.||..|..+|
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999998
No 276
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=60.54 E-value=15 Score=28.60 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQ 174 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~q 174 (332)
..|.+|+.++..|+.||+-|+..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777777777777777653
No 277
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=60.41 E-value=2.2e+02 Score=31.98 Aligned_cols=72 Identities=22% Similarity=0.403 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTL-------FQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~-------Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
||+.-+..|-.++.++..+...+...|.. .+.++..|.+++..|..+|..-+.+.--+.+.++.+.+|..++
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~ 376 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL 376 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333 3444555555555555555444444333334444444444443
No 278
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=60.34 E-value=1.5e+02 Score=27.79 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLF---QRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~L---qr~~~~L~sEN~eLK~RLqaL 199 (332)
+.+|+..+-.-+.+...|..+|..| .........|-..|+..+..+
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555333 222333344455555544443
No 279
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=60.33 E-value=9 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 164 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 164 Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
|-..|+.|..++..++.++..|..||-.|+.++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334455556666666666666666666665543
No 280
>PF13166 AAA_13: AAA domain
Probab=60.26 E-value=2.3e+02 Score=29.97 Aligned_cols=65 Identities=15% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
.+...+..+..+...+...+..+......+..+...++..+..++.+..-.+...+.+..++..|
T Consensus 407 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 407 KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33333333444444444444444444444444445555555444443332223334444444444
No 281
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=60.17 E-value=79 Score=30.57 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 141 QSAARSKERKARYIS----ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 141 eSA~RSReRKkqyie----eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
+|+----+||.-.++ .++.+++.|+.++..|..+++.+...+..-...+.++
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~ 225 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE 225 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455555677765554 4677777777777777777777766555444444433
No 282
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=59.99 E-value=77 Score=29.87 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 161 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 161 Vq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+.|..++..|.+++..|+..+..+.+|-++|..-|-.-+.|
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQ 122 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQ 122 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 344555555555555555555555555555554444333333
No 283
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=59.85 E-value=1.2e+02 Score=28.41 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 178 FQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALK 214 (332)
Q Consensus 178 Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~ 214 (332)
+-..+..+-.||..|...|..+-++...-.+..+.|.
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le 190 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLE 190 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444444333333344443
No 284
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.79 E-value=30 Score=27.35 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
.+..|+.++..++.+...|..++..+.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 285
>PRK12705 hypothetical protein; Provisional
Probab=59.76 E-value=2.2e+02 Score=30.34 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=4.5
Q ss_pred cccCCCCCC
Q 020026 263 VQLPEFHPF 271 (332)
Q Consensus 263 ~~~~~~~~~ 271 (332)
+.|+.|.|-
T Consensus 241 V~ls~fdp~ 249 (508)
T PRK12705 241 VVISSFNPI 249 (508)
T ss_pred hhhcccCcc
Confidence 355555543
No 286
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.69 E-value=1.2e+02 Score=33.56 Aligned_cols=10 Identities=50% Similarity=0.617 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 020026 215 KEVERLKVAT 224 (332)
Q Consensus 215 ~EvqrLk~at 224 (332)
+|+++++..+
T Consensus 639 ~EL~~~~~~l 648 (717)
T PF10168_consen 639 KELERMKDQL 648 (717)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 287
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.62 E-value=1.5e+02 Score=30.74 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 172 SAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 172 s~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.+-+..+..++..+..+..+|..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRI 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 288
>PF15058 Speriolin_N: Speriolin N terminus
Probab=59.60 E-value=18 Score=34.22 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.+.|..+++.|-.||.+|+++|.++ .||.+||.-|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL 41 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSAL 41 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHH
Confidence 3567788888899999999888755 6788887653
No 289
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=59.34 E-value=86 Score=29.66 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhHhhh-cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 118 PDKLAE-LWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 118 ~e~LaE-la~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+.+|.+ ++-+|.-|+|-|++++ ++---=..-...++.|......+|..|+.....|..||.+||+-.
T Consensus 71 NqELRdLCCFLDddRqKgrklar------------EWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElc 138 (195)
T PF10226_consen 71 NQELRDLCCFLDDDRQKGRKLAR------------EWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELC 138 (195)
T ss_pred HHHHHHHHcccchhHHHhHHHhH------------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHH
Q 020026 197 QAMEQQ 202 (332)
Q Consensus 197 qaLEqq 202 (332)
-.|..+
T Consensus 139 l~LDee 144 (195)
T PF10226_consen 139 LYLDEE 144 (195)
T ss_pred HHHhcc
No 290
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=59.21 E-value=1.9e+02 Score=28.73 Aligned_cols=6 Identities=50% Similarity=0.750 Sum_probs=2.5
Q ss_pred CCCCCC
Q 020026 94 SNSIDG 99 (332)
Q Consensus 94 s~s~d~ 99 (332)
|.|+|.
T Consensus 70 SsS~ds 75 (302)
T PF09738_consen 70 SSSVDS 75 (302)
T ss_pred cccccc
Confidence 344443
No 291
>PF14645 Chibby: Chibby family
Probab=59.20 E-value=32 Score=29.52 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
..+.+.|+.||.-|.-++.+|-.-.+..++|..-+
T Consensus 77 ~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777766654444444433333
No 292
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.10 E-value=87 Score=34.74 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHh
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ---LRD--ALNEALKKEVERLKVAT 224 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~---Lrd--alne~L~~EvqrLk~at 224 (332)
.-..+|-..++.|+.+...|+.++..+.-.=..|..+..+|... .+..|.+ |+. +..|.|+-||.||.-.+
T Consensus 62 ~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeE--NislQKqvs~Lk~sQvefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 62 QLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEE--NISLQKQVSVLKQSQVEFEGLKHEIKRLEEEI 137 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444332 2222222 222 35677888888888755
No 293
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.03 E-value=2e+02 Score=29.68 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHH
Q 020026 131 RAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTL--------------FQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 131 R~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~--------------Lqr~~~~L~sEN~eLK~RL 196 (332)
|+| .|..|-+--+.-|+ -+++-..+.++|+..|..|..++.. |+.-...+..||..|+.+|
T Consensus 76 kir-k~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 76 KIR-KITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHH-HHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 444 45555554443332 2333334445555555555554432 3344556677888888888
Q ss_pred HHHHHHH
Q 020026 197 QAMEQQA 203 (332)
Q Consensus 197 qaLEqq~ 203 (332)
+++.+++
T Consensus 151 ~~l~~e~ 157 (401)
T PF06785_consen 151 DALQQEC 157 (401)
T ss_pred HHHHHHH
Confidence 8887775
No 294
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.01 E-value=1.3e+02 Score=32.16 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
.+++||.++..++.+...+..++..++.+...+..+-..|+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544444444444444444444444444433
No 295
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=58.84 E-value=1.2e+02 Score=30.83 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTE-----------ATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~E-----------Ns~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
++.+ ++|++|...-..=.||...+.-=+..+++|..- ..-...++.+|++.+..|..+-.++...|+.
T Consensus 122 ~e~r-~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 122 REER-RLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 788888877766666644443334444444411 0111256666776666666666666666655
Q ss_pred HHHHHHH
Q 020026 199 MEQQAQL 205 (332)
Q Consensus 199 LEqq~~L 205 (332)
+.....+
T Consensus 201 ~~k~L~f 207 (323)
T PF08537_consen 201 TKKDLKF 207 (323)
T ss_pred HHHHHHH
Confidence 5444333
No 296
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.84 E-value=1.2e+02 Score=35.64 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=6.7
Q ss_pred HHHhHHHHHHHHHHHHH
Q 020026 179 QRDTTDLSTENTELKLR 195 (332)
Q Consensus 179 qr~~~~L~sEN~eLK~R 195 (332)
......+..|...|...
T Consensus 439 ~~~i~~~~~ei~~L~~~ 455 (1293)
T KOG0996|consen 439 RIEIQKCQTEIEQLEEL 455 (1293)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 297
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=58.77 E-value=55 Score=35.45 Aligned_cols=65 Identities=28% Similarity=0.269 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 126 TVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 126 ~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..|+|=.| | +- |+=|-+--..+-++.+. .=...|+++|..|..+++.|..||..||.||..++.+
T Consensus 274 ~~d~kv~k-r-----qQ----RmIKNResA~~SRkKKK--Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 274 GSDIKVLK-R-----QQ----RMIKNRESACQSRKKKK--EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred ccCHHHHH-H-----HH----HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 46888888 4 21 33333333333333321 1234588899899999999999999999999988765
No 298
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=58.69 E-value=32 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=12.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
..|+..+..|..+|..|+.++..|+
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555443
No 299
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.54 E-value=43 Score=28.09 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+.++.+.+++.+++.|+.+|..|..++..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666666666666554
No 300
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=58.31 E-value=40 Score=34.16 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAARSKERK---------ARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 136 iLaNReSA~RSReRK---------kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
+-+||.+---.-++| |+++++ -..||.|...|+.+|+..++.
T Consensus 87 V~aNRVA~vvANEWKD~nDkvMPVKqWLEE----RR~lQgEmQ~LrDKLAiaERt 137 (351)
T PF07058_consen 87 VSANRVATVVANEWKDENDKVMPVKQWLEE----RRFLQGEMQQLRDKLAIAERT 137 (351)
T ss_pred hhhhhhhhhhcccccccCCccccHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 567777766666666 445554 345667777777776666554
No 301
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=58.24 E-value=1.7e+02 Score=27.88 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHhccC
Q 020026 170 TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ-LRD------ALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 170 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~-Lrd------alne~L~~EvqrLk~atge~ 227 (332)
++..++..|..+......|-+.+.+-+..||..-. .+. .....+..|+..|+..+.++
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443311 111 11222335666666666555
No 302
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.21 E-value=12 Score=27.32 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
++..|++=|+..-..+. .|.+||.++..|..||-.|+.++
T Consensus 5 ~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 5 YSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 45556665555444443 36777777777777777777654
No 303
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=58.03 E-value=48 Score=26.53 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 166 TEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 166 ~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
.+...+..++..++++...|..||..|+..+..+....++
T Consensus 35 ~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rI 74 (97)
T PF04999_consen 35 HQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRI 74 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3455666677777788888888888887777666555444
No 304
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=57.98 E-value=92 Score=28.63 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
=|+=.|+++..|+.+|..|+.+++.|.. ...+|..+-.++..++....
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL 88 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALL 88 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 5677889999999999999999987754 46788888888888776643
No 305
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.70 E-value=1.3e+02 Score=34.34 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 136 iLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
...+-+.=.--+.+-.-.++.|..+++.|+.|+..|.+++.....+...|..++..||.+|.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344443334444444566666666777777777777776666666666666666666654
No 306
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.99 E-value=91 Score=24.24 Aligned_cols=10 Identities=30% Similarity=0.245 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 020026 142 SAARSKERKA 151 (332)
Q Consensus 142 SA~RSReRKk 151 (332)
||..+-.|-|
T Consensus 4 saL~~Eirak 13 (61)
T PF08826_consen 4 SALEAEIRAK 13 (61)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4444444433
No 307
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.61 E-value=2e+02 Score=33.47 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
...+++|..++..+..+...+..++.-+......+..+...++.+.
T Consensus 887 e~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 308
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=56.45 E-value=22 Score=31.01 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
..|+.+|..|..++..|+.||.-||.
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555666677777754
No 309
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.32 E-value=2.9e+02 Score=32.38 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
.+.|.-++..|+.+...+..++..+...+..|..++..|+..+...+
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555555555555566666666666666666666666655554443
No 310
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.10 E-value=1.2e+02 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
+.|-|.+++.=.+|+.+|+.||..++.+
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455666666677777777777776654
No 311
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.04 E-value=40 Score=29.80 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
..++.++..+.+....+..|+.+...-.+|-..|+
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr 114 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLR 114 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 312
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=55.97 E-value=63 Score=28.10 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 020026 150 KARYISELERK 160 (332)
Q Consensus 150 KkqyieeLE~k 160 (332)
+++|+..|+..
T Consensus 79 ~~~~i~~~~~~ 89 (139)
T PF13935_consen 79 AQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHH
Confidence 45666666655
No 313
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.96 E-value=1.7e+02 Score=27.21 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSA 173 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ 173 (332)
..+++.+++....+...+..
T Consensus 84 ~r~~~~klk~~~~el~k~~~ 103 (194)
T PF15619_consen 84 ERELERKLKDKDEELLKTKD 103 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333
No 314
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.96 E-value=1.1e+02 Score=25.55 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEA-TTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~EN-s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+|-..=|.||..|..-- +....+|..|+.++..|..||..|+.+|.....+
T Consensus 26 ~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 26 ALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888886332 3377788888888888888888888888766544
No 315
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.77 E-value=70 Score=24.76 Aligned_cols=46 Identities=9% Similarity=0.281 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
+++.++..+++....+...+..+++....+..+-..+..+|..++.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544444444555555555543
No 316
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=55.63 E-value=1e+02 Score=24.39 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 020026 148 ERKARYISELERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQAQ-LRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 148 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql-~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~-Lrdalne~L~~EvqrLk~atg 225 (332)
.....++..|+..+..++........+| ..+..-...|..+...|..+|........ .-....+.|..++..|..+..
T Consensus 17 ~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 17 AELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777777777666 33344445566666666666655544311 122344455555555554443
No 317
>COG5293 Predicted ATPase [General function prediction only]
Probab=55.57 E-value=2.8e+02 Score=29.89 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020026 134 SRILANRQSAARSKERKAR-YISELERKVQTLQTEATTLSA---------QLTLFQRDTTDLSTENTELKLRLQAMEQQA 203 (332)
Q Consensus 134 ~RiLaNReSA~RSReRKkq-yieeLE~kVq~Lq~ENs~Ls~---------ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~ 203 (332)
++|..||-+=..+.-.|.+ -+.+++.+++.|..+.+++-+ +.+.|+.++..+..|-.++..|+..+.+-.
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~ 409 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLH 409 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 4888999888877766644 355666666666666555432 556778888888888999988888887776
Q ss_pred HHHHH
Q 020026 204 QLRDA 208 (332)
Q Consensus 204 ~Lrda 208 (332)
.+.+.
T Consensus 410 ~~~~~ 414 (591)
T COG5293 410 ALDQY 414 (591)
T ss_pred HHHHH
Confidence 66544
No 318
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.56 E-value=1e+02 Score=33.83 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTT-------DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~-------~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
+..|+.|+.|+..|..+++....+.. .|..|...|++++..|+ +.++.++.|+..++.+.|+.
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEle-------aeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELE-------AEYDLARTELDQTKEALGQY 76 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665554443322 23445555655555553 67777888888888887764
No 319
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=55.51 E-value=88 Score=30.45 Aligned_cols=43 Identities=37% Similarity=0.346 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 182 TTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
+..+..||..||.++..+++... ..+.|++|-++||...+..-
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLE----EVESLEEENKRLKELLDFKE 110 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCcc
Confidence 34567888888888776655544 34778888888888877653
No 320
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.44 E-value=1.1e+02 Score=33.97 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 199 MEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 199 LEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
|..+...-+-.|+-|..+.++-+.+..++
T Consensus 297 l~~~~~~LELeN~~l~tkL~rwE~~~~~~ 325 (716)
T KOG4593|consen 297 LQSTLLGLELENEDLLTKLQRWERADQEM 325 (716)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333345666777777766665553
No 321
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=55.41 E-value=1.5e+02 Score=26.44 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 020026 168 ATTLSAQLTLFQRD 181 (332)
Q Consensus 168 Ns~Ls~ql~~Lqr~ 181 (332)
|..|..++..|+..
T Consensus 53 ~eeLk~~i~~lq~~ 66 (155)
T PF06810_consen 53 NEELKKQIEELQAK 66 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 322
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=55.35 E-value=1.5e+02 Score=31.31 Aligned_cols=48 Identities=31% Similarity=0.506 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQ----------TEATTLSAQL-------TLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq----------~ENs~Ls~ql-------~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
+++|+++|+.-...|+ -||..|-..+ ..-|+++..|...|++|.-||.
T Consensus 416 RrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa 480 (593)
T KOG4807|consen 416 RRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA 480 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 3477777765444443 3444444333 2346777888888888877764
No 323
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=55.30 E-value=1.9e+02 Score=27.30 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+..||.++..|..+...|..++....+....+...-.....+.+.|...
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~ 95 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQF 95 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666555555555555555555555555444
No 324
>PRK04325 hypothetical protein; Provisional
Probab=55.28 E-value=1e+02 Score=24.45 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
..+|.++..|+...+-....|..|.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN 29 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLN 29 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555555555443
No 325
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=55.22 E-value=2e+02 Score=27.74 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=4.6
Q ss_pred HHHHHHHHHhc
Q 020026 215 KEVERLKVATG 225 (332)
Q Consensus 215 ~EvqrLk~atg 225 (332)
.++..++....
T Consensus 217 ~~l~~~~~~l~ 227 (423)
T TIGR01843 217 AELEVLKRQID 227 (423)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 326
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=55.09 E-value=58 Score=33.39 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLR 206 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lr 206 (332)
.|-.+|..|..+..++.++|+.--++|..+..|-..+|.-+..|.-+ +.|+
T Consensus 144 nl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elK 195 (405)
T KOG2010|consen 144 NLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELK 195 (405)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888899888888888888888888777776433 3444
No 327
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=55.06 E-value=1.8e+02 Score=27.06 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARY-----ISELERKVQTLQTEATTLSAQLTLFQRDTT-------DLSTENTELKLRL 196 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqy-----ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~-------~L~sEN~eLK~RL 196 (332)
|.++..+|-.||..-..-+.+...- -.--+.+...|++|...|..++..++.+.. -+...-..++.++
T Consensus 115 p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~ 194 (240)
T PF12795_consen 115 PERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARI 194 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH
Confidence 5565556666666555555543321 111233333444444444444444433322 2233333344444
Q ss_pred HHHHHH-HHHHHHHHHHHH
Q 020026 197 QAMEQQ-AQLRDALNEALK 214 (332)
Q Consensus 197 qaLEqq-~~Lrdalne~L~ 214 (332)
+.++.. ..|++.+|..-.
T Consensus 195 ~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 195 QRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 444444 334444444444
No 328
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.79 E-value=1.1e+02 Score=31.52 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
|.++..++++...|...-..|..-...|..+...|+++++.|
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444444444444444443333333
No 329
>PRK00846 hypothetical protein; Provisional
Probab=54.77 E-value=1.1e+02 Score=24.85 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
++++.++..|+...+-....|..|.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN 33 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELS 33 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666555555555544443
No 330
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=54.62 E-value=1.5e+02 Score=26.56 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVE 218 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql-~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~Evq 218 (332)
.++|.....+....+.|+.++ ..-..+...+..++..|+..+..++++.. .....++.++.
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~---~ei~~l~a~~k 108 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR---EEINKLRAEVK 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 331
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=54.50 E-value=64 Score=28.15 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
++=.+|..|+.....|.+++..|.+....|..||..|+.
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~l 43 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRL 43 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 345678888888999999999999999999999998843
No 332
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=54.40 E-value=1.8e+02 Score=26.77 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERKARYISELERKVQTLQTEATTL 171 (332)
Q Consensus 140 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~L 171 (332)
=..+-.-|.++..+.+.++..+..+++....|
T Consensus 103 vk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 103 VRAAFAQRQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666655555555554444
No 333
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.01 E-value=1.8e+02 Score=26.86 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+.-+..+..++..++.+...|.-+...|...+..|..|..+|..+.
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555443
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=53.95 E-value=1.3e+02 Score=32.17 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HhHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLF---QR----DTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~L---qr----~~~~L~sEN~eLK~RLqaLEq 201 (332)
-++.||.++..|+.+...|.+++..- .. ....+..|-.+++.+|+.++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776321 11 244444455555555544433
No 335
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.82 E-value=75 Score=31.34 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
....+.+.+.++..++.....|..+.....++...|..+......+|.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344445555555555555555555555555555555555555555543
No 336
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=53.77 E-value=2e+02 Score=30.14 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
...+.+|-.+++....-...|..-+...+.+...+..|-..|+.+-..|..+..-|.+..+.|..-|+.+
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i 82 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455666666666666667777777777777777777777777777777666665655555555444443
No 337
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.54 E-value=84 Score=34.61 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..+.+||.|-+.|+.|+.++..+++.+++....-..|-..||..++..
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 467789999999999999999999999888776666766676655433
No 338
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=53.43 E-value=1.1e+02 Score=24.16 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
|.+-..++..|..|-..|+.+.-.+......|...+.++...+..+. ...+.+..++..|+.-
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~-------~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK-------KKLEELEKELESLEER 69 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 44555666777777777776665555555555555555544443332 2334444555555543
No 339
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.32 E-value=50 Score=26.82 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
.|+.|..++..|..+|..|..++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555554443
No 340
>PRK00295 hypothetical protein; Provisional
Probab=53.31 E-value=1.1e+02 Score=23.92 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
+|.++..|+...+-....|..|..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~ 26 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALND 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666655555555555433
No 341
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=53.29 E-value=3.2e+02 Score=29.46 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
.|+++...+|..++...+....++..+..+...++.+|+-|
T Consensus 37 ~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~L 77 (701)
T PF09763_consen 37 EYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGL 77 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 34444444444444444444444444444444444444433
No 342
>PRK14160 heat shock protein GrpE; Provisional
Probab=53.25 E-value=1.5e+02 Score=28.17 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
-+..|+.++..|+.++..|..++..++..+..+.++...++.|...
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777788888888888888888888888888888888744
No 343
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=52.85 E-value=97 Score=33.90 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 141 QSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 141 eSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
.|-+.-++.=+..|..||.+++.+..+..+|..++... .+|..+..|-+.||
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 34444444444555555555555555555555444433 44455555544443
No 344
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.10 E-value=1.2e+02 Score=31.37 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHH---HHHHHHHH
Q 020026 185 LSTENTELKLRLQAMEQQA------QLRDALNEAL---KKEVERLK 221 (332)
Q Consensus 185 L~sEN~eLK~RLqaLEqq~------~Lrdalne~L---~~EvqrLk 221 (332)
-..|-..||+.|..||... +.|| +.|++ +.-|.+|.
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRd-i~E~~Es~qtRisklE 318 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKMAYQSYERARD-IWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 3567788888888888753 3332 34444 36677777
No 345
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=52.07 E-value=1.1e+02 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 020026 182 TTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLqaLEq 201 (332)
...+.+.|-.+..+|+..+.
T Consensus 20 L~kvk~~n~~~e~kLqeaE~ 39 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEK 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555443
No 346
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=52.07 E-value=1.2e+02 Score=29.85 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=33.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAAR-SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 136 iLaNReSA~R-SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
-|+|||.+-. +|.||+.-..++ ..|+.... -+.+|..|+.+...+++++-....+|..+..+
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 5678876644 555555433333 22322221 13456667777666667776666666555443
No 347
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.02 E-value=1.8e+02 Score=32.96 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcc
Q 020026 215 KEVERLKVATGE 226 (332)
Q Consensus 215 ~EvqrLk~atge 226 (332)
+||.||+..+--
T Consensus 536 aEi~RL~eLtR~ 547 (861)
T PF15254_consen 536 AEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHHHHH
Confidence 799999887743
No 348
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=51.60 E-value=1.6e+02 Score=31.17 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..+|++.|...+++.......+...+..+++....+..+-.++.-+|..+-.+
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~ 482 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER 482 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35788888888888888888888888888888888888888887777766544
No 349
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=51.46 E-value=2.5e+02 Score=34.57 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
.+++++++.+.++.+...|..++..
T Consensus 67 ~~~~~~~q~~~~~~e~s~l~~~L~~ 91 (1822)
T KOG4674|consen 67 RLSDLSRQAKLLRNELSDLRNELEQ 91 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 350
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=51.42 E-value=1.8e+02 Score=26.07 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALK 214 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~ 214 (332)
|++.-=..+-.-|.++..+++.++..++..+.....|...-..-......+..|-.+++.++..++.... ...+.++
T Consensus 118 ~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~---~is~~~k 194 (236)
T PF09325_consen 118 RYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFE---EISENIK 194 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4555555556666677777777777777666666665554222233444555566666665555544422 2346666
Q ss_pred HHHHHHHH
Q 020026 215 KEVERLKV 222 (332)
Q Consensus 215 ~EvqrLk~ 222 (332)
.|++|+..
T Consensus 195 ~E~~rf~~ 202 (236)
T PF09325_consen 195 KELERFEK 202 (236)
T ss_pred HHHHHHHH
Confidence 77776654
No 351
>PLN02320 seryl-tRNA synthetase
Probab=51.41 E-value=1.5e+02 Score=31.60 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
..+.+|..+...++.+...|+++...+.++
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~ 122 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANK 122 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555444444333
No 352
>PF14282 FlxA: FlxA-like protein
Probab=51.34 E-value=96 Score=25.89 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTL 171 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~L 171 (332)
|..|+.+++.|+.+...|
T Consensus 21 I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 353
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=51.33 E-value=81 Score=32.42 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 020026 153 YISELERKVQTL 164 (332)
Q Consensus 153 yieeLE~kVq~L 164 (332)
-+++|..||..|
T Consensus 47 EN~~Lk~eVerL 58 (420)
T PF07407_consen 47 ENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 354
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.11 E-value=1.9e+02 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAARSKERKARYISELERK 160 (332)
Q Consensus 136 iLaNReSA~RSReRKkqyieeLE~k 160 (332)
+++++....+-...-...+.+++.+
T Consensus 49 ~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 49 VMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334443333
No 355
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=51.11 E-value=73 Score=34.46 Aligned_cols=74 Identities=28% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTL----------------------------FQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~----------------------------Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+.-+..|+..+..|+.++..|..+|.. -+.....|..||..|+.++..++..
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHh
Q 020026 203 AQLRDALN-----EALKKEVERLKVAT 224 (332)
Q Consensus 203 ~~Lrdaln-----e~L~~EvqrLk~at 224 (332)
........ .....|+..|+..+
T Consensus 589 ~~~~~~~~p~~~~~~~~~e~~~l~~~~ 615 (722)
T PF05557_consen 589 NSQPVDAVPTSSLESQEKEIAELKAEL 615 (722)
T ss_dssp T----------------HHHHHHHHHH
T ss_pred CCCCcccccchhhhhhHHHHHHHHHHH
No 356
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=51.09 E-value=1.1e+02 Score=29.89 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 147 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 147 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
..-+..+..+|..+.+.|+.++.++...+. +...|+.||..||.-|
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKELAELEQLLE----EVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 334455666666666666666655554433 3456777777775533
No 357
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=51.09 E-value=1.7e+02 Score=25.61 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSA 173 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ 173 (332)
+...|+.....|+.++..|..
T Consensus 28 ~~~~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 28 AESSLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 358
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.08 E-value=2.5e+02 Score=28.10 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 221 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk 221 (332)
+..-+.+|+.+...|......+...-..+..+...+..+-.+|-.++..|..+++-.....+.+-.+|+.||
T Consensus 4 ~~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK 75 (294)
T COG1340 4 MLDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELK 75 (294)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 359
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=51.07 E-value=1.7e+02 Score=25.47 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.++.++..++..|+........++..+.+.
T Consensus 51 ~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r 80 (141)
T PF13874_consen 51 ERLKEINDKLEELQKHDLETSARLEEARRR 80 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555555555555555555555444433
No 360
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=50.88 E-value=70 Score=27.05 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLST 187 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s 187 (332)
+|.+.++-.+.|..-|+..++.+..++..|+.
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~ 36 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTE 36 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444443333333
No 361
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=50.16 E-value=1.1e+02 Score=30.83 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
.+|++.|+.++..|+.+...|.+++..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666666666666665543
No 362
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=49.99 E-value=2.2e+02 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
.++++..++.+......++..+...+..|..+...+.
T Consensus 118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 363
>PRK11281 hypothetical protein; Provisional
Probab=49.94 E-value=1.3e+02 Score=34.88 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERK 150 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRK 150 (332)
.-|.|++.|+-.||.-.+.-+.+.
T Consensus 156 T~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 156 TQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 446666657777777666555544
No 364
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=49.92 E-value=1.4e+02 Score=27.23 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.+..+ +++..|+-|.---.+|-.-..+|..+++..+..+..|...|+.+...
T Consensus 83 ~~Em~-KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 83 EKEME-KLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566 78888888887777888888888888888887777777777766543
No 365
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=49.89 E-value=71 Score=29.53 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 173 AQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 173 ~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
.++..++..+..|..++..|+.+...+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~ 137 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAIT 137 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 366
>PF14645 Chibby: Chibby family
Probab=49.88 E-value=63 Score=27.79 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 020026 181 DTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 181 ~~~~L~sEN~eLK~RLqaL 199 (332)
++..|..||+-||.+++.|
T Consensus 79 ~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 79 ENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555544433
No 367
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.72 E-value=1.3e+02 Score=32.46 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 148 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 148 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.++|...++|+.+++. ...|+..+..|.+.+..|...-+.+...+.+|++.
T Consensus 274 ~~lk~~n~~l~e~i~e----a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K 324 (622)
T COG5185 274 ANLKTQNDNLYEKIQE----AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQK 324 (622)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555555542 33445555555555555555555555555555554
No 368
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.57 E-value=4.2e+02 Score=31.12 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 020026 144 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ--------AQLRDALNEALKK 215 (332)
Q Consensus 144 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq--------~~Lrdalne~L~~ 215 (332)
.......+.-++++|......-.+...|...+....-+...+.+++.++|.++..+... .+|+ .+.+.++.
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~-~~i~~~~~ 488 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLR-SLIANLEE 488 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33444444555555555555555555555555555555566666666666666554322 2222 23444555
Q ss_pred HHHHHHHHhccCC
Q 020026 216 EVERLKVATGEMM 228 (332)
Q Consensus 216 EvqrLk~atge~~ 228 (332)
++.+-...++.++
T Consensus 489 dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 489 DLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHhc
Confidence 5555444444443
No 369
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=49.49 E-value=65 Score=30.01 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 131 RAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 131 R~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
.++.=|++-|.++..-|.|=+.|.-+||.+=..|....+-..+||+.|++.+..+
T Consensus 113 ~l~~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 113 HLTRAILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred hhHHHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3441377788888889999999999999988888888888888888877665443
No 370
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=49.40 E-value=2.3e+02 Score=26.67 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKV 161 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kV 161 (332)
|+.- +.+.+--.|+.+|.||. |.+||.+.
T Consensus 94 k~~q-~Rm~~qL~~aE~rhrr~--i~eLe~EK 122 (192)
T PF09727_consen 94 KKMQ-RRMLEQLAAAEKRHRRT--IQELEEEK 122 (192)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4444 44555666667777665 55555543
No 371
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=49.26 E-value=1.2e+02 Score=32.51 Aligned_cols=66 Identities=27% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHH--HHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATT----------LSAQLTLFQRDTTDLSTENTELKLRLQAM-----EQQAQLRDA--LNEALKKEVER 219 (332)
Q Consensus 157 LE~kVq~Lq~ENs~----------Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL-----Eqq~~Lrda--lne~L~~Evqr 219 (332)
||.+|+.||...+. |+..|..|..+.-.+..|.+.+...|+.| ..+.+|++. ..+.|.-|+..
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHH
Q 020026 220 LKV 222 (332)
Q Consensus 220 Lk~ 222 (332)
++.
T Consensus 423 ~k~ 425 (527)
T PF15066_consen 423 IKA 425 (527)
T ss_pred Hhh
No 372
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=48.97 E-value=89 Score=31.06 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTL-------FQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~-------Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..+-++|.+|+.|+.-|..|.++++. +...-..+.+|...|+++|..||..
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~ 274 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEE 274 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 45678999999999999999999821 2233456677777888888777544
No 373
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.90 E-value=1.1e+02 Score=23.71 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLSTE 188 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sE 188 (332)
.|+.+|..+..+|..++..|..+...|..+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666665555554444443
No 374
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=48.89 E-value=1.4e+02 Score=23.98 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 189 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN 189 (332)
|...|..|..|..+|..++...+.++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887777766655554
No 375
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.73 E-value=2.9e+02 Score=29.03 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.4
Q ss_pred cCChHHHH
Q 020026 126 TVDPKRAK 133 (332)
Q Consensus 126 ~~DpKR~K 133 (332)
+.+|...+
T Consensus 140 l~~~~~~~ 147 (563)
T TIGR00634 140 LFRPDEQR 147 (563)
T ss_pred hcCHHHHH
Confidence 33444444
No 376
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=48.55 E-value=40 Score=31.49 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
-.|.+ |-.+++ .+..++.+.+|+.+|..|+.++.++...+..|
T Consensus 90 y~R~~-~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 90 YWRQA-RKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred hHHhh-hcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 554444 56667788888888888877655555555444
No 377
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=48.47 E-value=1.8e+02 Score=34.39 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
.++..++..++.++..+..+...++..+...+........|+..|..|..+.....
T Consensus 958 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~ 1013 (1395)
T KOG3595|consen 958 QDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWSETS 1013 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 34445555566666666777777777777776666666667777776666655544
No 378
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.44 E-value=3.7e+02 Score=28.71 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 147 KERKARYISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 147 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
++.-+-.+..||.++..|...++.|......
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dk 329 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADK 329 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544433
No 379
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=48.41 E-value=1.1e+02 Score=31.91 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERKARYISELERKVQTL 164 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~L 164 (332)
.++|..| |....-+-=||-|.+=..+|.+|-.-|=..
T Consensus 226 ~~~rdr~-Krd~HNeVERRRR~nIN~~IkeLg~liP~~ 262 (411)
T KOG1318|consen 226 ALERDRR-KRDNHNEVERRRRENINDRIKELGQLIPKC 262 (411)
T ss_pred hhHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444 555555566666777677777776544433
No 380
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.36 E-value=82 Score=33.37 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
+.+-+.++..|+.+...| +++...+...+..+..+|+.++
T Consensus 71 LteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLE 110 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLG 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444455555554444444 3443344444555555555443
No 381
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.08 E-value=97 Score=25.65 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTL---FQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~---Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
.|+.||.++.+.......+..++.. --.....|..|...|+.++...|.+.+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELK 60 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4555555555555544444444411 112334555666666666666655533
No 382
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=47.90 E-value=2.6e+02 Score=26.87 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 020026 209 LNEALKKEVERLK 221 (332)
Q Consensus 209 lne~L~~EvqrLk 221 (332)
..+.|..||+.|+
T Consensus 285 ~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 285 EAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 4566677777764
No 383
>PRK00106 hypothetical protein; Provisional
Probab=47.83 E-value=3.9e+02 Score=28.77 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 020026 146 SKERKARYISELERKV 161 (332)
Q Consensus 146 SReRKkqyieeLE~kV 161 (332)
.+..++++..+.+.++
T Consensus 66 Ake~~ke~~lEaeeEi 81 (535)
T PRK00106 66 SKALKKELLLEAKEEA 81 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 384
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=47.74 E-value=23 Score=39.80 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSA-----QLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~-----ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
+||.+++.++..|+.|..+++- ++..|++.+..+..+|..|-.+++..+..-+.
T Consensus 829 kql~eykvey~vLq~El~~~~~~~~~~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~ 887 (948)
T KOG4436|consen 829 KQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLEQLQVAELTIQT 887 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcccccccccchhhhHhhhhhhhhhhccccchhhH
Confidence 7899999999999999888766 34444555555555555555555544444333
No 385
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=47.64 E-value=55 Score=24.83 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
||+..|++||.+++.=. |.-.+.. .........|..||..|+.+|.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~d~--~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSLDR--SAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccCCc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777766433 1111111 1223344455566666665554
No 386
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.46 E-value=5.3e+02 Score=30.22 Aligned_cols=108 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred HhhhhcCChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 020026 110 IEAKKAMDPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ---------- 179 (332)
Q Consensus 110 ~~~Kk~m~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq---------- 179 (332)
.++-|++.++.|-+. .+.++ -+-+++.+-.+.-..|..++..|++++..|......+..+...+.
T Consensus 165 ~eTekAig~~~ll~~----h~eL~-~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~ 239 (1072)
T KOG0979|consen 165 VETEKAIGAEELLQY----HIELM-DLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKK 239 (1072)
T ss_pred HHHHHhcCchhhHHH----HHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred --------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 180 --------RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 222 (332)
Q Consensus 180 --------r~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~ 222 (332)
+++..+.....-+|..+..++...+--.-..+.|+.|+..+..
T Consensus 240 ~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~ 290 (1072)
T KOG0979|consen 240 WVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRS 290 (1072)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHH
No 387
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=47.34 E-value=56 Score=24.77 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
.....++..|..||..|.++|..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666667777777777776654
No 388
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=47.31 E-value=2.1e+02 Score=28.85 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQ-----TEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 154 ieeLE~kVq~Lq-----~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
|++|..++...+ .|....++||++- +-..|-++||+=+++|..-
T Consensus 91 I~eLksQL~RMrEDWIEEECHRVEAQLALK-----EARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 91 IDELKSQLARMREDWIEEECHRVEAQLALK-----EARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhh
Confidence 455554444432 3445555555532 3346777788777777544
No 389
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.11 E-value=2.4e+02 Score=26.63 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHH-HHHHH----------
Q 020026 128 DPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATT----LSAQLTLFQRDTTDLST-ENTEL---------- 192 (332)
Q Consensus 128 DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~----Ls~ql~~Lqr~~~~L~s-EN~eL---------- 192 (332)
++.|+| +.+.+||.++...+.+... -....+++++++..|.. .-++|
T Consensus 97 EevrLk------------------rELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~ 158 (195)
T PF12761_consen 97 EEVRLK------------------RELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKS 158 (195)
T ss_pred HHHHHH------------------HHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 193 -------KLRLQAMEQQAQLRDALNEALKKEVERLK 221 (332)
Q Consensus 193 -------K~RLqaLEqq~~Lrdalne~L~~EvqrLk 221 (332)
+.-|+.+++|+..-+.....=+.|++.|+
T Consensus 159 ~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 159 GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 390
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.08 E-value=3.2e+02 Score=29.86 Aligned_cols=42 Identities=12% Similarity=0.307 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 161 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 161 Vq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
|..++..+..+...|..++.++.....|+..|+.....|..+
T Consensus 282 ~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 282 VSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555555555554444333
No 391
>PRK00736 hypothetical protein; Provisional
Probab=46.92 E-value=1.4e+02 Score=23.32 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
+|.++..|+...+-+...|..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~L 24 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555555555444
No 392
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=46.62 E-value=6.5 Score=42.27 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
+|.+-+.+|..+|+.|+..|..|-.+...|+.+
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEee 354 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEE 354 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999888777666555544
No 393
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.61 E-value=81 Score=24.35 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
....+..++.++..++.+|..|..++..|
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666554
No 394
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.58 E-value=1.7e+02 Score=27.13 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHH
Q 020026 183 TDLSTENTELKLRLQAMEQQA-QLRD--ALNEALKKEVERLKV 222 (332)
Q Consensus 183 ~~L~sEN~eLK~RLqaLEqq~-~Lrd--alne~L~~EvqrLk~ 222 (332)
..|..|-+.|..+++.||... .++. ..-..|..|++++..
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666665541 1111 233334555555543
No 395
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=46.24 E-value=2.1e+02 Score=25.35 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHh
Q 020026 213 LKKEVERLKVAT 224 (332)
Q Consensus 213 L~~EvqrLk~at 224 (332)
+..+|++|++++
T Consensus 116 ~~~ki~~Le~~i 127 (146)
T PF08702_consen 116 NRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334556665554
No 396
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=46.15 E-value=1.9e+02 Score=31.40 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
|+.+.+|+...-.|..+|.+|...+..-+.-...|...-.+|+..|
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l 211 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKL 211 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887666655443333333333333333333
No 397
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.05 E-value=2.6e+02 Score=26.31 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
+..|+..+..|+.+..........+......+...-..|...+..+.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666655555553
No 398
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=45.90 E-value=3.3e+02 Score=27.48 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 145 RSKERKARYISELERKV---QTLQTEA----TTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 145 RSReRKkqyieeLE~kV---q~Lq~EN----s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.+.++.++|+++.|.-. ..|+... .+|...+..+..+...|++||..|..+|..
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~ 81 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEK 81 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 46677778888776432 2333322 235555666677778888888888777743
No 399
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=45.50 E-value=1.1e+02 Score=28.08 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 173 AQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 209 (332)
Q Consensus 173 ~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdal 209 (332)
.-+++.+++...|..+|++|+.+++.|-..++-.+.+
T Consensus 40 ~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~ 76 (225)
T PF04340_consen 40 GAVSLVERQLERLRERNRQLEEQLEELIENARENEAI 76 (225)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888887766644443
No 400
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=45.35 E-value=1.9e+02 Score=31.29 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 143 AARSKERKARYISELERKVQTL---QTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 143 A~RSReRKkqyieeLE~kVq~L---q~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
=..+.++|+.|-.||-+-...| +++...|.-+|...+++...+..+|+.++..++.+|.+.++
T Consensus 37 fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 37 FEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3567777777777665544444 45555677788888999999999999999999999999653
No 401
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.29 E-value=4.8e+02 Score=30.60 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred ChhHhhhcccCChHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH--------------HHHHH
Q 020026 117 DPDKLAELWTVDPKRAKSRILANRQSAARSK----------ERKARYISELERKVQTLQTE--------------ATTLS 172 (332)
Q Consensus 117 ~~e~LaEla~~DpKR~K~RiLaNReSA~RSR----------eRKkqyieeLE~kVq~Lq~E--------------Ns~Ls 172 (332)
+...+.|+. +.+ |=+.+.+-.+... .|+++..+..-.+.+.+..+ |..|+
T Consensus 198 s~~~~~~L~-----~~q-~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls 271 (1109)
T PRK10929 198 SANNRQELA-----RLR-SELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELS 271 (1109)
T ss_pred ccHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHH
Q 020026 173 AQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDA---------LNEALKKEVERL 220 (332)
Q Consensus 173 ~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrda---------lne~L~~EvqrL 220 (332)
.++.....+...+..+|...|..++.+.+. ..+++. +-+.|.+..++|
T Consensus 272 ~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~L 329 (1109)
T PRK10929 272 QALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARL 329 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhC
No 402
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=45.27 E-value=1.6e+02 Score=24.91 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 020026 208 ALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 208 alne~L~~EvqrLk~atge~~ 228 (332)
..|+.|+.|++++|...|...
T Consensus 29 ~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 29 DENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHhcCCCc
Confidence 467888899999999877653
No 403
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=45.25 E-value=1.6e+02 Score=28.66 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=7.0
Q ss_pred hhhcccCChHHHH
Q 020026 121 LAELWTVDPKRAK 133 (332)
Q Consensus 121 LaEla~~DpKR~K 133 (332)
.+-|+.+|+..++
T Consensus 86 G~~L~~ld~~~~~ 98 (370)
T PRK11578 86 DQLLGVIDPEQAE 98 (370)
T ss_pred CCEEEEECcHHHH
Confidence 3445556665544
No 404
>PRK15396 murein lipoprotein; Provisional
Probab=45.17 E-value=1.5e+02 Score=24.10 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+.|..+|+.|..+..+|...+..+.
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 405
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=45.00 E-value=3.2e+02 Score=27.03 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
+.+.+.....+.|.-+-..|..||.++..++.++...+++|..+.|+
T Consensus 148 ~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 148 RKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 66666666554444444467778888877777777777777777665
No 406
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=44.91 E-value=2.8e+02 Score=26.39 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 148 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 148 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
.+...-+..|+.+.+.++.+...|..+...+...+..|
T Consensus 29 ~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 29 EESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544444443333333
No 407
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=44.83 E-value=2.8e+02 Score=26.27 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 136 iLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+.+-..-+.|.-..-+.....|...+..-+..-.....+-...+.+...|..|...+..+|..+..+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~q 176 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQ 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444444444555555555555555444433
No 408
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=44.64 E-value=2.2e+02 Score=24.92 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
.+|.. +|...-..|.+.+..=.....+.+.++...+.+...+..+.
T Consensus 52 ~~R~~-~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A 97 (156)
T CHL00118 52 DERKE-YIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQS 97 (156)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777 78899999999999989999999999999998888877655
No 409
>PHA03011 hypothetical protein; Provisional
Probab=44.64 E-value=2.1e+02 Score=24.94 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atg 225 (332)
|.++-..|-.++.-++.|-+.|..-+|.- +-..-.|++|+.+||....
T Consensus 69 L~~qYN~L~dEYn~i~Ne~k~~~~iIQdn-------~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 69 LIAQYNELLDEYNLIENEIKDLEIIIQDN-------DDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444443333322 2233456778888876543
No 410
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=44.56 E-value=3.6e+02 Score=27.55 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE----NTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sE----N~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
..+..|..+...+..+...|.++...+.++...+... -.+|+.++..+..+..-.+.....+.+++..+-..++-+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4556666667777777777777776666666553322 235555555554443333334444455555544444444
No 411
>PRK10963 hypothetical protein; Provisional
Probab=44.54 E-value=87 Score=29.14 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 203 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~ 203 (332)
=|+=.|++++.|+.+|..|+.++..|- ....+|..+-.++..+..+.
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888888887764 35678888888887776663
No 412
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.52 E-value=4.2e+02 Score=28.22 Aligned_cols=16 Identities=6% Similarity=0.339 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhccC
Q 020026 212 ALKKEVERLKVATGEM 227 (332)
Q Consensus 212 ~L~~EvqrLk~atge~ 227 (332)
=|++.+..++..+.++
T Consensus 144 Pl~e~l~~f~~~v~~~ 159 (475)
T PRK10361 144 PLREQLDGFRRQVQDS 159 (475)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3557777787777653
No 413
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.45 E-value=1.6e+02 Score=33.73 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHH----------------HHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA-QLRDA----------------LNEA 212 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~-~Lrda----------------lne~ 212 (332)
+..-.-+||.++..|+.|-..|..++..+......|. | +.+++|+.+|.+. .++.. ....
T Consensus 507 ~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~-e--er~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~k 583 (913)
T KOG0244|consen 507 YESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLG-E--ERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAK 583 (913)
T ss_pred HhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhh-h--HHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHH
Confidence 3344568888999999999999998887766332222 2 2233566666662 22222 2233
Q ss_pred HHHHHHHHHHHhccC
Q 020026 213 LKKEVERLKVATGEM 227 (332)
Q Consensus 213 L~~EvqrLk~atge~ 227 (332)
|..||.+++....++
T Consensus 584 l~~ei~~~k~~kv~l 598 (913)
T KOG0244|consen 584 LLQEIHIAKGQKVQL 598 (913)
T ss_pred HHHHHHHHHHHHHHH
Confidence 557887777766544
No 414
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.42 E-value=1.4e+02 Score=30.13 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=4.4
Q ss_pred hhHHhhhc
Q 020026 290 AFSEMLQQ 297 (332)
Q Consensus 290 ~~~~~~~~ 297 (332)
.+.++|..
T Consensus 253 Qv~~ll~~ 260 (319)
T PF09789_consen 253 QVKELLES 260 (319)
T ss_pred HHHHHHhc
Confidence 35566655
No 415
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=44.20 E-value=1.7e+02 Score=32.53 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
..++.++++||.|.-.. | ..+|++...|+.||++|+.
T Consensus 229 vs~~e~i~~LQeE~l~t--Q-~kYQreLErlEKENkeLr~ 265 (980)
T KOG0447|consen 229 VSDKEKIDQLQEELLHT--Q-LKYQRILERLEKENKELRK 265 (980)
T ss_pred hhHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHhhHHHHH
Confidence 34677888888775332 2 3478889999999999983
No 416
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=44.19 E-value=3.8e+02 Score=27.69 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
.+|.+ +|..+=+.|...+.+=.++..+.|.++...+.|..++..+-
T Consensus 31 ~~R~~-~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A 76 (445)
T PRK13428 31 AARQD-TVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEA 76 (445)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 67777778887777777777777777777777777766544
No 417
>smart00340 HALZ homeobox associated leucin zipper.
Probab=44.13 E-value=62 Score=23.93 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
...|.+-+..|..||+.|+..++.|
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888776554433
No 418
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.03 E-value=2e+02 Score=25.02 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+.+..+..+++.+......|..........+..+...+.+|..|+
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666664444555555555555666665554
No 419
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=43.92 E-value=2e+02 Score=33.14 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+..|-.|..++..|+.|.+.|.+.+..+|.+...-.+|-.++..++..+++.
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~e 156 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDE 156 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445556666666666666666666666655555555555555555555544
No 420
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=43.88 E-value=3.1e+02 Score=28.82 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 172 SAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 172 s~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
...+..|+.....|..|-...|.-+..+.+...........|..|+.+++..+
T Consensus 301 k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 301 KEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444555555555555444
No 421
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=43.86 E-value=2.7e+02 Score=30.11 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH
Q 020026 128 DPKRAKSRILAN------RQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK-LRLQAME 200 (332)
Q Consensus 128 DpKR~K~RiLaN------ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK-~RLqaLE 200 (332)
||+++. ++..- .......++.-.+-.+-|+.++..|+.+....+.++..+++++.-+..++..+. ++|..++
T Consensus 165 dP~~Aa-~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~ 243 (754)
T TIGR01005 165 DPKLAA-AIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELN 243 (754)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 201 QQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 201 qq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
.+.....+.....+...+.|+.......
T Consensus 244 ~ql~~a~~~~~~a~a~~~~l~~~l~~~~ 271 (754)
T TIGR01005 244 TELSRARANRAAAEGTADSVKKALQNGG 271 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 422
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=43.79 E-value=51 Score=28.38 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+.++|+.||+-|+-++..|-
T Consensus 80 k~~~LeEENNlLklKievLL 99 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666653
No 423
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=43.71 E-value=1.9e+02 Score=26.89 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=33.4
Q ss_pred hhcCChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 113 KKAMDPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 113 Kk~m~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
..+.=+..-+|+.....+.+. ..++..+.--.+|++|+.+-+.+...++.+..+|+.+|...+
T Consensus 111 ~~~~C~N~C~e~~~~~~~~~~----~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 111 SGGKCPNTCAELGKEYREELE----EEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred CCCCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666666422211111 122222333445667777777777777777666666665543
No 424
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.62 E-value=1.8e+02 Score=32.77 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 161 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 161 Vq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
++.|..|...+..++..++.....|...+..|+..+..|+
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455556666666666666666666666666665555544
No 425
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=43.49 E-value=3e+02 Score=26.25 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
.+|.+ +|..+-+.|.+.+..=++...+-+.+++.++.+...+..+.
T Consensus 35 ~eR~~-~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 80 (250)
T PRK14474 35 KKRQQ-RIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA 80 (250)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 78888888888888877788888888888887777766554
No 426
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.36 E-value=3.4e+02 Score=31.82 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 146 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 146 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
|.+|.......|......+...-+.+...+..|+..+..+..+-.++...|....
T Consensus 417 sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~ 471 (1141)
T KOG0018|consen 417 SVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVL 471 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444443333
No 427
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.30 E-value=1.3e+02 Score=24.69 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLST 187 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s 187 (332)
..-+..|+.++..++.+...|..++..++.+...+..
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655555555555555444444333
No 428
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=43.23 E-value=43 Score=28.86 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=17.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..|++++..|..||+-||.+++.|
T Consensus 75 ~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888899998877655
No 429
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.99 E-value=4e+02 Score=27.60 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
+..++..+..+...+..+..+|+.+|+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSE 163 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 430
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.92 E-value=3.8e+02 Score=27.24 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE---LKLRLQAMEQQAQLRDALNEALKKEVERLKV 222 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~e---LK~RLqaLEqq~~Lrdalne~L~~EvqrLk~ 222 (332)
.+|...+..++.+...+..++..++++...+..+-.. ...++..|+.+....+..++.|.+-.+..+.
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666665555555444444332 2234455555555555555555544444433
No 431
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.85 E-value=2.1e+02 Score=30.03 Aligned_cols=70 Identities=26% Similarity=0.287 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEAT---TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL------RDA--LNEALKKEVERLK 221 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs---~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L------rda--lne~L~~EvqrLk 221 (332)
|.-++.--.+.||.|-- .|+++|..+ +..-..|-..||+.|..||...-. |+. -.|.++..|.+|.
T Consensus 290 ~krdy~fi~etLQEERyR~erLEEqLNdl---teLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 290 IKRDYKFIAETLQEERYRYERLEEQLNDL---TELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555665543 345554332 222346777889999999877332 221 2233446677776
Q ss_pred HHhc
Q 020026 222 VATG 225 (332)
Q Consensus 222 ~atg 225 (332)
.+-.
T Consensus 367 l~qq 370 (455)
T KOG3850|consen 367 LQQQ 370 (455)
T ss_pred HHHH
Confidence 6544
No 432
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.83 E-value=2.9e+02 Score=29.78 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL----RDALNEALKKEVERLK 221 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L----rdalne~L~~EvqrLk 221 (332)
..+.|+..+..|+..|..++...+++...+..|..+++.++..|+.+..- -+.....|.+++..|-
T Consensus 431 ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 431 HADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34556667777777788888777777778888888888877777655322 2234555666664443
No 433
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=42.60 E-value=1.7e+02 Score=29.86 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 161 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 161 Vq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
|..||..|.+|..||...|.++.-|..-|++--..++.|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKL 40 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKL 40 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655555444433333333
No 434
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=42.57 E-value=3.7e+02 Score=28.11 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+.|..|..|.+.-..-++.+.++...++.+..+.......+..++
T Consensus 197 ~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 197 QELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455556666666666666666666666666666555555444443
No 435
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=42.44 E-value=3.3e+02 Score=26.49 Aligned_cols=75 Identities=25% Similarity=0.343 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHH-----HHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQ-----TLQTEA--TTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALKKEVERLK 221 (332)
Q Consensus 150 KkqyieeLE~kVq-----~Lq~EN--s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdalne~L~~EvqrLk 221 (332)
=..|-.-+|.-|. .|+.|+ +.+..++..|+-+...|...-.++|.++.+-+.- +..+.......++|++.|+
T Consensus 162 ~aAYqtlyeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk 241 (259)
T KOG4001|consen 162 FAAYQTLYESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLK 241 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3355555555442 333333 3355555555555555555555555544433322 3334344455566777776
Q ss_pred HHh
Q 020026 222 VAT 224 (332)
Q Consensus 222 ~at 224 (332)
...
T Consensus 242 ~tN 244 (259)
T KOG4001|consen 242 ETN 244 (259)
T ss_pred HHH
Confidence 543
No 436
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.42 E-value=3e+02 Score=26.47 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=9.7
Q ss_pred chhHHhhhcCCCcccccccccC
Q 020026 289 HAFSEMLQQDPLGRLQGLDING 310 (332)
Q Consensus 289 ~~~~~~~~~~~~~~~qgl~i~~ 310 (332)
+.+-+.+|. ||-|.+
T Consensus 196 gtVv~v~qk-------GY~l~~ 210 (238)
T PRK14143 196 DVVLEELQR-------GYHLGG 210 (238)
T ss_pred CeEEEEeeC-------CceeCC
Confidence 445666776 788844
No 437
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=42.26 E-value=3.6e+02 Score=26.77 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERKARYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 140 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
++..+...+|.++++++.+.=+..|.....+|..++
T Consensus 112 nekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~ 147 (268)
T PF11802_consen 112 NEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQV 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555666666666666665555555555555544
No 438
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=42.20 E-value=39 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=19.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
++.|..+...|..||+.||.+|..--
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44556666778899999999985443
No 439
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=42.20 E-value=3.1e+02 Score=26.09 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
..++.||.+++.|+........++..++.....+..+...|
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l 108 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSEL 108 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666677766665555555555555555444444444444
No 440
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.20 E-value=2.2e+02 Score=24.33 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
..|+.++..++.....|..+....+..|.
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 441
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=42.08 E-value=2.1e+02 Score=32.41 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 168 ATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 168 Ns~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
..+|.++++.++.+..++..-+..||..
T Consensus 94 i~dle~~l~klE~el~eln~n~~~L~~n 121 (829)
T KOG2189|consen 94 IIDLEEQLEKLESELRELNANKEALKAN 121 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344444444444444444444444443
No 442
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=41.98 E-value=3e+02 Score=30.12 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTD----------LSTENTELKLRLQAMEQQA---QLRDALNEALKKEVE 218 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~----------L~sEN~eLK~RLqaLEqq~---~Lrdalne~L~~Evq 218 (332)
.....|..++..|+.|+..|..+-+.+||.|.. -+....|+.+||+.+--|. .-+++...+|. -|+
T Consensus 30 dEfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~aQl~PfLsqehQqqvlq-AvE 108 (705)
T KOG0639|consen 30 EEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQLIPFLSQEHQQQVLQ-AVE 108 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHH
Confidence 788899999999999999999999999988642 1234556777888776662 22455566665 477
Q ss_pred HHHHHhcc
Q 020026 219 RLKVATGE 226 (332)
Q Consensus 219 rLk~atge 226 (332)
|.|..|..
T Consensus 109 raKqvT~~ 116 (705)
T KOG0639|consen 109 RAKQVTMS 116 (705)
T ss_pred HHhhcchh
Confidence 77765543
No 443
>PRK14011 prefoldin subunit alpha; Provisional
Probab=41.86 E-value=1.5e+02 Score=26.36 Aligned_cols=10 Identities=60% Similarity=0.684 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 020026 192 LKLRLQAMEQ 201 (332)
Q Consensus 192 LK~RLqaLEq 201 (332)
|..+++.+++
T Consensus 125 L~~k~~~~~~ 134 (144)
T PRK14011 125 LEKRAQAIEQ 134 (144)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 444
>PRK01156 chromosome segregation protein; Provisional
Probab=41.84 E-value=5.2e+02 Score=28.51 Aligned_cols=7 Identities=0% Similarity=0.453 Sum_probs=3.0
Q ss_pred chhHHhh
Q 020026 289 HAFSEML 295 (332)
Q Consensus 289 ~~~~~~~ 295 (332)
..+-++|
T Consensus 844 ~~l~~~l 850 (895)
T PRK01156 844 TNLKDII 850 (895)
T ss_pred HHHHHHH
Confidence 3344444
No 445
>PLN02939 transferase, transferring glycosyl groups
Probab=41.83 E-value=3.2e+02 Score=31.64 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 178 FQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 178 Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
|-.++..|..||..||.-++.|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAE 248 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3556677778888888877777554
No 446
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.67 E-value=1.6e+02 Score=31.50 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTE-------ATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALKKEVERLK 221 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~E-------Ns~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdalne~L~~EvqrLk 221 (332)
+++-+++++.+|+.|+.. .....+++..|+++.......-+.++..|+..-.+ ...-.++..+-++.+.+|+
T Consensus 189 ~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 189 NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHH
Confidence 345667777777777654 22333444444444444333334444444333222 1111234444557888888
Q ss_pred HHhcc
Q 020026 222 VATGE 226 (332)
Q Consensus 222 ~atge 226 (332)
...+-
T Consensus 269 ~~~~~ 273 (555)
T TIGR03545 269 NKYAI 273 (555)
T ss_pred HHhCC
Confidence 87763
No 447
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=41.65 E-value=4.6e+02 Score=29.57 Aligned_cols=9 Identities=22% Similarity=0.124 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 020026 187 TENTELKLR 195 (332)
Q Consensus 187 sEN~eLK~R 195 (332)
.|-..|+..
T Consensus 378 ~Ei~~l~d~ 386 (775)
T PF10174_consen 378 GEIEDLRDM 386 (775)
T ss_pred HHHHHHHHH
Confidence 333333333
No 448
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=41.60 E-value=3.1e+02 Score=25.92 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
..+-.||.||..|+.....+-..+..-+.+.-.+..+-..||++|.+++..
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKK 129 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHH
Confidence 455666777776665555544444433334444455555555555555444
No 449
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.43 E-value=91 Score=24.17 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
++||+.++..|+.|+..++..+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888776653
No 450
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=41.30 E-value=1e+02 Score=32.64 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
++.||.++..|+.+...|.+++.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888888888877774
No 451
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.26 E-value=2.5e+02 Score=24.70 Aligned_cols=52 Identities=10% Similarity=0.282 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+.|+.|..++.....-...+..++..++.+...+..+-..+...+..|+..
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888877777777777788777777777777777776666666544
No 452
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=41.26 E-value=1.1e+02 Score=32.46 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
..|...+..||+++..|+.-++.|++|+.+......--..+...+..|-+.-+.+.++
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~~~qe 466 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQQFQE 466 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcc
Confidence 3466677888999999999999999988776555433334555555555555555544
No 453
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.05 E-value=3.2e+02 Score=25.97 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
.||..+..++.+...+...+..|......|...-.+++.+.+
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444444444444444444333
No 454
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.96 E-value=91 Score=31.19 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
..++.+|+.+++.|+..+..|..++..++++...+..++..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 455
>PHA03162 hypothetical protein; Provisional
Probab=40.91 E-value=34 Score=30.58 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RL 196 (332)
++.|..+...|..||+.||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777889999999998
No 456
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=40.82 E-value=1.1e+02 Score=33.74 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 209 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdal 209 (332)
+|-.||..|..|+.-|+.++...+.-...|...+++|.+.|..+.+++......
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 457
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=40.73 E-value=1.6e+02 Score=27.02 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
+.+.++.+++.|+.....+...|..+| ...=..|-.++..+|+.||+
T Consensus 93 ~~~~l~~ri~eLe~~l~~kad~vvsYq--ll~hr~e~ee~~~~l~~le~ 139 (175)
T PRK13182 93 QLNTITRRLDELERQLQQKADDVVSYQ--LLQHRREMEEMLERLQKLEA 139 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443322 11112344455555555543
No 458
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.65 E-value=5.5e+02 Score=28.50 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 020026 215 KEVERLKVAT 224 (332)
Q Consensus 215 ~EvqrLk~at 224 (332)
.+++.|+..+
T Consensus 646 ~~l~~l~~si 655 (717)
T PF10168_consen 646 DQLQDLKASI 655 (717)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 459
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=40.43 E-value=2e+02 Score=29.94 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020026 191 ELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 191 eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atg 225 (332)
+++.+++.++.+...-....+.|+..+++|+....
T Consensus 197 ~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~ 231 (475)
T PF10359_consen 197 ELKSDIEELERHISSLKERIEFLENMLEDLEDSES 231 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33334444433322222344555556666665443
No 460
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.29 E-value=7e+02 Score=29.60 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 142 SAARSKERKARYISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 142 SA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
.|++.-..-++++++++..+...+.+...+..++..
T Consensus 872 ~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~ 907 (1353)
T TIGR02680 872 HAATRAAEQRARAARAESDAREAAEDAAEARAEAEE 907 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444333
No 461
>PHA03155 hypothetical protein; Provisional
Probab=39.90 E-value=37 Score=29.63 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
+..|..+...|..||+.||.+|.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666778899999999883
No 462
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.70 E-value=6.6e+02 Score=29.13 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERKARYISELERKVQTLQTEATT 170 (332)
Q Consensus 140 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~ 170 (332)
-++|..+...+.+...+|..++..++.+...
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666655555554444
No 463
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.68 E-value=1.7e+02 Score=22.33 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
|+..|.+.|..+.........|..++.
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554443
No 464
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=39.46 E-value=2e+02 Score=27.60 Aligned_cols=51 Identities=22% Similarity=0.196 Sum_probs=29.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYIS-ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 150 Kkqyie-eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
|..|+. |||.-...-+.|...-..++..|..=......|..+.+.++|.+-
T Consensus 9 ~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 9 KLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 666666666666666666665555545555556666655555553
No 465
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=39.40 E-value=97 Score=31.48 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLS 172 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls 172 (332)
+.++..|+.++..|.
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (398)
T PTZ00454 28 EKELEFLDIQEEYIK 42 (398)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444333333333
No 466
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=39.39 E-value=2e+02 Score=22.96 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
.+-+++-+..+..-+.|...++..+++...|...+..|-.+++.|..+..
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=39.25 E-value=1.6e+02 Score=27.41 Aligned_cols=6 Identities=33% Similarity=0.202 Sum_probs=2.1
Q ss_pred HHHHHH
Q 020026 189 NTELKL 194 (332)
Q Consensus 189 N~eLK~ 194 (332)
..+|+.
T Consensus 162 l~~l~~ 167 (176)
T PF12999_consen 162 LEELEK 167 (176)
T ss_pred HHHHHH
Confidence 333333
No 468
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.11 E-value=3.8e+02 Score=28.16 Aligned_cols=94 Identities=18% Similarity=0.338 Sum_probs=43.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 126 TVDPKRAKSRILANRQSAARSKERKAR-YISELERKVQTLQTEATTLSA---QLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 126 ~~DpKR~K~RiLaNReSA~RSReRKkq-yieeLE~kVq~Lq~ENs~Ls~---ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
..||.++- . +.+|-+..+.-.||.. -++++-...+.++.+...|.. .+..|+.+...+..+-..+-..|.....
T Consensus 297 ~~dp~~L~-e-le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 297 EFDPERLN-E-IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred CCCHHHHH-H-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676665 3 5566666666555543 344444444444444443322 3333444433333333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020026 202 QAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 202 q~~Lrdalne~L~~EvqrLk~a 223 (332)
++ ...+.+.+..++..|.+.
T Consensus 375 ~~--a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 375 KA--AERLAKRVEQELKALAME 394 (563)
T ss_pred HH--HHHHHHHHHHHHHhCCCC
Confidence 21 123455555666665553
No 469
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.97 E-value=2.6e+02 Score=24.24 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 136 iLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
+-.-.+...-|+..=...-++|+..++.|+.++.....++..|+..+..+...-.. .++..++.+..+
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~~l~~r~ 88 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKLELESRL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33444555555555555556677777777777777777777777777666655444 244554444443
No 470
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.87 E-value=4.9e+02 Score=27.37 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 020026 158 ERKVQTLQTEATTLSAQLTL-FQR---DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMT 229 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~-Lqr---~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~~ 229 (332)
..+++.|+.+.+.++.++.. +.+ ....|..+-+.|+.+|..++.+ .+.+..|++.+-...+-++.
T Consensus 42 ~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~-------~~~~~~~l~~~ll~ipNi~~ 110 (429)
T COG0172 42 LRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAA-------LDELEAELDTLLLTIPNIPH 110 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHhCCCCCc
Confidence 34445555555555555542 111 2345666666666666555433 33445666666666665553
No 471
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=38.41 E-value=1.9e+02 Score=29.31 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 020026 181 DTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 181 ~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+..|..||.+||.++..|+.+
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~ 79 (337)
T PRK14872 58 HALVLETENFLLKERIALLEER 79 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444433
No 472
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=38.37 E-value=31 Score=36.46 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLS 172 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls 172 (332)
.|++|++++++|+++...|.
T Consensus 32 kie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 44444444444444444333
No 473
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=38.37 E-value=2.5e+02 Score=26.81 Aligned_cols=43 Identities=14% Similarity=0.335 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
.|.++..-...+..|...+..+...+..|+.-+..+-+++...
T Consensus 100 ~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~ 142 (205)
T KOG1003|consen 100 AEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY 142 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH
Confidence 3334444444444555555555555555555444444444333
No 474
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=38.25 E-value=72 Score=30.68 Aligned_cols=38 Identities=45% Similarity=0.574 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
|+++||..|+.+....+ ..++.|..||..|+.||..|+
T Consensus 102 kA~~~i~~l~~~~~~~~--------------~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 102 KALEHIQSLERKSATQQ--------------QDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHhc
Confidence 45577777777666543 344555677778888877664
No 475
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=38.08 E-value=2.2e+02 Score=23.23 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERK-VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 149 RKkqyieeLE~k-Vq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
|...-++.++.. ...|..++..|...|..|-.....+..||..| +..|+.|..=|..|
T Consensus 5 ~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL--------------~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 5 RNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKL--------------ESENEYLQQYIGNL 63 (80)
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
No 476
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=37.74 E-value=1.8e+02 Score=31.15 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
||.-++||..+|..|..-+..|. ....++|++-+..|+.+..+| ..|.-||+.|+.|+
T Consensus 567 ~k~s~delr~qi~el~~ive~lk-------------~~~~kel~kl~~dleeek~mr----~~lemei~~lkka~ 624 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALK-------------KDHGKELEKLRKDLEEEKTMR----SNLEMEIEKLKKAV 624 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH----hhhHhhHHHHHHHh
No 477
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.65 E-value=5.5e+02 Score=30.73 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 137 LANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ-RDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKK 215 (332)
Q Consensus 137 LaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq-r~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~ 215 (332)
+.|..-+.+.-.-|-+-+.++|...+.|+.....+..+...|+ ++..-+..+.++...++...+.+.+--.+++.-+.+
T Consensus 443 l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~e 522 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEE 522 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 020026 216 EVERLK 221 (332)
Q Consensus 216 EvqrLk 221 (332)
|+..+.
T Consensus 523 ele~~q 528 (1317)
T KOG0612|consen 523 ELEDAQ 528 (1317)
T ss_pred HHHHHH
No 478
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=37.43 E-value=2.9e+02 Score=30.02 Aligned_cols=62 Identities=26% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 163 TLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA---------------------MEQQAQLRDALNEALKKEVERLK 221 (332)
Q Consensus 163 ~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa---------------------LEqq~~Lrdalne~L~~EvqrLk 221 (332)
.+..++..|..++..|+++...|..++..|..+|.. ......++..-.+.|++|.++|+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~ 579 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLL 579 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHh
Q 020026 222 VAT 224 (332)
Q Consensus 222 ~at 224 (332)
...
T Consensus 580 ~~l 582 (722)
T PF05557_consen 580 ARL 582 (722)
T ss_dssp HHH
T ss_pred HHH
No 479
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.22 E-value=4.6e+02 Score=26.61 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHH
Q 020026 128 DPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE--------LKLRLQAM 199 (332)
Q Consensus 128 DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~e--------LK~RLqaL 199 (332)
||..+. .+.|.....--.............-.+-|+.+...++.++...+........+|.. +..++..+
T Consensus 132 dP~~Aa--~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l 209 (498)
T TIGR03007 132 DPELAK--DVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEA 209 (498)
T ss_pred CHHHHH--HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 020026 200 EQQAQLRDALNEALKKEVERLKVATGEMMT 229 (332)
Q Consensus 200 Eqq~~Lrdalne~L~~EvqrLk~atge~~~ 229 (332)
+++..-.++....++..+..|+...+..+.
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~ 239 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGGEEP 239 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC
No 480
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.17 E-value=2e+02 Score=24.44 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 139 NRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 139 NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
||++++..+.-+..|-..|..+.. +..|.+++..+..+......+..++
T Consensus 58 NRq~~~dr~ra~~D~~inl~ae~e-----i~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 58 NRQAARDRLRAELDYQINLKAEQE-----IERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred hHhHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHhHHHHHHHHHh
No 481
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.97 E-value=3.6e+02 Score=25.28 Aligned_cols=73 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL--QAMEQQAQLRDALNEALKKEVERLKVATGEMMT 229 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL--qaLEqq~~Lrdalne~L~~EvqrLk~atge~~~ 229 (332)
++.++..|+.+...|.+++..+...+..+.++...++.|+ +.-+....-...+...|-.=+..|..|+...+.
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~ 112 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVK 112 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc
No 482
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=36.96 E-value=6.6e+02 Score=28.35 Aligned_cols=95 Identities=11% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDA 208 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrda 208 (332)
..++. .+......-.-.=.+....++.+..+++.++.....|..++..++.....+..+-...+.....++.+....++
T Consensus 595 ~eelE-~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 595 EEELE-KLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHh
Q 020026 209 LNEALKKEVERLKVAT 224 (332)
Q Consensus 209 lne~L~~EvqrLk~at 224 (332)
....|..-|..|...+
T Consensus 674 E~~~l~~Ki~~Le~El 689 (769)
T PF05911_consen 674 EAEELQSKISSLEEEL 689 (769)
T ss_pred HHHHHHHHHHHHHHHH
No 483
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=36.92 E-value=35 Score=25.61 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTL 171 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~L 171 (332)
++.|||.+|+.|..-|..|
T Consensus 19 rv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eHHHHHHHHHHHHHHhHHH
No 484
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.92 E-value=4.2e+02 Score=26.05 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 020026 133 KSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL----TLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRD 207 (332)
Q Consensus 133 K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql----~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrd 207 (332)
+ ++..-+..=+.-.++-...+..|+.+|..|.+++....++| +...++|---...-.+|+.+|+.+... ..=.+
T Consensus 63 ~-~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEld 141 (258)
T PF15397_consen 63 K-QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELD 141 (258)
T ss_pred H-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 020026 208 ALNEALKKEVERL 220 (332)
Q Consensus 208 alne~L~~EvqrL 220 (332)
.+++..+.|...|
T Consensus 142 el~e~~~~el~~l 154 (258)
T PF15397_consen 142 ELNEMRQMELASL 154 (258)
T ss_pred HHHHHHHHHHHHH
No 485
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.84 E-value=2.1e+02 Score=29.14 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
++.+.+|+.+++.++.+...|...+..++.... ....-...+..++.+.....-.......|.+++..|+...
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=36.81 E-value=1.4e+02 Score=29.88 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
+..|+.++..++.++..|..++..+..+...+..+...|+..+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 487
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.80 E-value=4.6e+02 Score=26.50 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHH
Q 020026 145 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD----------------------------TTDLSTENTELKLRL 196 (332)
Q Consensus 145 RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~----------------------------~~~L~sEN~eLK~RL 196 (332)
+.|+.=...++.+..+..+|+.+...+..+...+..+ .++|-+||+-|++||
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL 205 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 197 QAMEQQAQLRDALNEALKKEVER 219 (332)
Q Consensus 197 qaLEqq~~Lrdalne~L~~Evqr 219 (332)
..++.+..+...-....+.=+++
T Consensus 206 ~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 206 KQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 488
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.52 E-value=3e+02 Score=24.34 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQL--TLFQRDTTDLSTENTELKLRLQAMEQQ-AQL 205 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql--~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~L 205 (332)
.+|.. +|..+=..|...+..=.+...+.+.++...+.+...+..+. ..-+.....+..-+.+....++.-+.+ ..-
T Consensus 46 ~~R~~-~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e 124 (173)
T PRK13460 46 DERAS-GVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELA 124 (173)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020026 206 RDALNEALKKEVERLKVAT 224 (332)
Q Consensus 206 rdalne~L~~EvqrLk~at 224 (332)
+......|+.||..|.+..
T Consensus 125 ~~~a~~el~~ei~~lA~~~ 143 (173)
T PRK13460 125 KGKALSQLQNQIVEMTITI 143 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 489
>PLN03188 kinesin-12 family protein; Provisional
Probab=36.49 E-value=4.9e+02 Score=31.18 Aligned_cols=88 Identities=30% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERK--ARYISELERKVQTLQTE-----------ATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRK--kqyieeLE~kVq~Lq~E-----------Ns~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
||+.+-|--=..+|+|.=.|= .+++.-|-.++..|..| |..|..|| +++..-..---+|-.||
T Consensus 1131 r~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~ql----rdtaeav~aagellvrl 1206 (1320)
T PLN03188 1131 RRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQL----RDTAEAVQAAGELLVRL 1206 (1320)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hhHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 020026 197 QAMEQQ-------AQLRDALNEALKKEVERLK 221 (332)
Q Consensus 197 qaLEqq-------~~Lrdalne~L~~EvqrLk 221 (332)
...|.. +...+..++.+.++|+.||
T Consensus 1207 ~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1207 KEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=36.49 E-value=5.3e+02 Score=29.37 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred hcCChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 020026 114 KAMDPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSA-------------------- 173 (332)
Q Consensus 114 k~m~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~-------------------- 173 (332)
..+..+.|-++...+..|.+ -..+-++--.---+|-.+.-.+++++...|+.-+..++-
T Consensus 130 qs~rae~lpeveael~qr~~-al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhl 208 (916)
T KOG0249|consen 130 QSLRAETLPEVEAELAQRNA-ALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHL 208 (916)
T ss_pred hHHhhhhhhhhHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHH
Q ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 174 -QLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 221 (332)
Q Consensus 174 -ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk 221 (332)
+....-.+...|..|-..+|+++.+++....--.-.+|.|+.|+..|+
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
No 491
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.49 E-value=5.4e+02 Score=27.24 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERK----------VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~k----------Vq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
.|..+ ++...-.-+...-..-+.-++.|... +..++.+...|..++..+..........-.+++.++..
T Consensus 309 ek~~~-~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~lee 387 (569)
T PRK04778 309 EKNSD-TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE 387 (569)
T ss_pred HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 199 MEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 199 LEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
+..+..--......+...++.|+..
T Consensus 388 l~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 388 ILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=36.37 E-value=3.3e+02 Score=24.67 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT----DLSTENTELKLRLQAMEQQAQLRDALN 210 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~----~L~sEN~eLK~RLqaLEqq~~Lrdaln 210 (332)
|+|-+=++++-....-..-++.|.....+|..+...-...-...+..+. .+..|++.|..++..|+.+.+--.-..
T Consensus 33 ~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 33 RVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHH
Q 020026 211 EALKKEVERL 220 (332)
Q Consensus 211 e~L~~EvqrL 220 (332)
..+...+.+|
T Consensus 113 ~~~~~q~~rl 122 (158)
T PF09744_consen 113 KNLSDQSSRL 122 (158)
T ss_pred hhhhhhcccc
No 493
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.30 E-value=6.5e+02 Score=28.06 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=0.0
Q ss_pred HhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 120 KLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 120 ~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..|+.+.+++.=+. |- ++-...-..+=-+.|++|+.+...++.+...+......+++....|..+-.+|+.+-..+
T Consensus 487 ~iA~~~Glp~~ii~-~A---~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 487 EIAQRYGIPHFIIE-QA---KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHhCcCHHHHH-HH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHHHH
Q 020026 200 EQQ-AQLRDALNEALKKEVERL 220 (332)
Q Consensus 200 Eqq-~~Lrdalne~L~~EvqrL 220 (332)
..+ ..-.....+..++|++.+
T Consensus 563 ~~~a~~ea~~~~~~a~~~~~~~ 584 (771)
T TIGR01069 563 KLELEKEAQEALKALKKEVESI 584 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=36.16 E-value=3e+02 Score=30.49 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
+-++.|-.+..+|-...+.|----..|..+.+.|..||..|+-.+.+..+...--+-.+..|.+|+.++|..+
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=36.15 E-value=1.6e+02 Score=25.10 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
++.|+++++.|......|...+..++++...+...-.++..+.+
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 496
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=36.03 E-value=2.7e+02 Score=31.19 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 148 ERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKE 216 (332)
Q Consensus 148 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~E 216 (332)
+++.--+..||.+.-.|.+|.+.|+-+++.|+++...-+..-+.-..-+|.+. +.+.-+..++.|..|
T Consensus 163 QqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye 230 (861)
T KOG1899|consen 163 QQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYE 230 (861)
T ss_pred HHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
No 497
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=36.03 E-value=3.3e+02 Score=25.97 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
+...+...+.|+.+..+++.+...|...+.....-+.+-+.|-..++.....-.-..+.|+.|+..++..-+++
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv 149 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQV 149 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
No 498
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.01 E-value=2.2e+02 Score=23.99 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
|+=|-.--+.|...+..|..++..++.++..+......++.++..+..+.+
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 499
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.96 E-value=4.2e+02 Score=28.53 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
++++.+-+.+.+.|+-+...+.+.-..||.++..-..+.+..-.+.-.|+...--++-..+.|+..-..|..||
T Consensus 403 qk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat 476 (527)
T PF15066_consen 403 QKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKAT 476 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
No 500
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.93 E-value=90 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
+.+||.++..|+.++.+|+. +..++.+......+..+...+++.++
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~ 103 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLE 103 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhc
Done!