Query 020026
Match_columns 332
No_of_seqs 220 out of 738
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 3.4E-14 1.2E-18 105.0 6.7 52 130-182 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 7.8E-12 2.7E-16 94.1 9.5 56 129-185 1-56 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 1.2E-11 4E-16 92.3 9.1 55 130-185 1-55 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 9.6E-11 3.3E-15 87.7 7.7 53 130-183 1-53 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 5.2E-10 1.8E-14 84.7 6.8 45 137-181 15-59 (63)
6 1ci6_A Transcription factor AT 98.9 2.3E-09 7.8E-14 80.9 7.4 55 130-185 2-56 (63)
7 1gd2_E Transcription factor PA 98.9 5.1E-09 1.7E-13 81.1 7.7 66 127-193 5-70 (70)
8 1gu4_A CAAT/enhancer binding p 98.4 1.7E-06 5.8E-11 68.2 9.9 57 127-184 12-68 (78)
9 1hjb_A Ccaat/enhancer binding 98.4 1.9E-06 6.6E-11 69.1 9.8 54 127-181 12-65 (87)
10 2wt7_B Transcription factor MA 98.1 1.6E-05 5.5E-10 64.3 10.3 72 115-199 17-88 (90)
11 3a5t_A Transcription factor MA 98.1 1.3E-07 4.4E-12 78.6 -3.1 58 115-178 27-84 (107)
12 2oqq_A Transcription factor HY 97.3 0.00043 1.5E-08 49.0 5.4 39 151-196 2-40 (42)
13 2w6a_A ARF GTPase-activating p 95.3 0.065 2.2E-06 40.6 7.4 40 154-193 22-61 (63)
14 2jee_A YIIU; FTSZ, septum, coi 95.0 0.58 2E-05 37.2 12.3 50 152-201 6-55 (81)
15 1skn_P DNA-binding domain of S 94.6 0.0047 1.6E-07 50.1 -0.5 30 129-159 61-90 (92)
16 2jee_A YIIU; FTSZ, septum, coi 93.8 0.84 2.9E-05 36.2 10.7 43 154-196 22-64 (81)
17 3hnw_A Uncharacterized protein 93.8 0.63 2.1E-05 39.7 10.8 53 150-202 73-125 (138)
18 3oja_B Anopheles plasmodium-re 92.8 1.4 4.8E-05 43.2 13.1 72 155-226 505-583 (597)
19 3s4r_A Vimentin; alpha-helix, 92.7 1.6 5.4E-05 34.8 11.0 64 159-222 23-91 (93)
20 3oja_B Anopheles plasmodium-re 91.6 2.9 0.0001 40.9 13.8 65 162-226 505-576 (597)
21 3efg_A Protein SLYX homolog; x 91.3 0.51 1.7E-05 36.8 6.4 49 152-200 14-62 (78)
22 3cve_A Homer protein homolog 1 91.0 4 0.00014 31.6 11.1 48 155-202 3-50 (72)
23 3ol1_A Vimentin; structural ge 90.8 4.8 0.00017 33.1 12.3 33 170-202 66-98 (119)
24 3cvf_A Homer-3, homer protein 90.7 2 6.8E-05 33.8 9.3 49 154-202 8-56 (79)
25 3vkg_A Dynein heavy chain, cyt 90.7 1.6 5.3E-05 53.0 12.6 63 157-219 2026-2088(3245)
26 3swy_A Cyclic nucleotide-gated 90.3 1.5 5E-05 31.4 7.5 44 156-202 2-45 (46)
27 1deb_A APC protein, adenomatou 90.3 1.5 5.2E-05 32.2 7.7 43 154-196 5-47 (54)
28 3o0z_A RHO-associated protein 89.2 6.7 0.00023 34.8 12.5 39 155-193 37-75 (168)
29 2oqq_A Transcription factor HY 89.1 1.5 5.2E-05 31.0 6.7 21 153-173 18-38 (42)
30 3a7p_A Autophagy protein 16; c 89.1 1.7 5.8E-05 38.1 8.6 49 153-201 69-117 (152)
31 3o0z_A RHO-associated protein 89.0 7.3 0.00025 34.5 12.7 54 142-202 80-133 (168)
32 3u1c_A Tropomyosin alpha-1 cha 88.7 8 0.00027 31.0 14.7 52 147-198 18-69 (101)
33 3m48_A General control protein 88.5 0.5 1.7E-05 31.8 3.7 27 154-180 2-28 (33)
34 2oxj_A Hybrid alpha/beta pepti 88.1 0.64 2.2E-05 31.5 4.1 27 153-179 2-28 (34)
35 2dfs_A Myosin-5A; myosin-V, in 88.1 11 0.00039 41.1 16.1 21 180-200 1023-1043(1080)
36 3s9g_A Protein hexim1; cyclin 87.9 2.1 7.1E-05 35.3 7.8 38 156-193 41-85 (104)
37 3swf_A CGMP-gated cation chann 87.9 1.8 6.2E-05 33.8 7.1 47 155-204 3-49 (74)
38 3mq9_A Bone marrow stromal ant 87.7 16 0.00056 34.9 15.4 67 152-221 404-470 (471)
39 3hnw_A Uncharacterized protein 87.5 4.9 0.00017 34.1 10.3 49 152-200 82-130 (138)
40 1kd8_B GABH BLL, GCN4 acid bas 87.1 1 3.6E-05 30.8 4.7 28 153-180 2-29 (36)
41 1go4_E MAD1 (mitotic arrest de 86.9 1.9 6.6E-05 35.3 7.1 69 153-228 13-95 (100)
42 3c3f_A Alpha/beta peptide with 86.9 0.84 2.9E-05 30.9 4.1 28 153-180 2-29 (34)
43 2ve7_C Kinetochore protein NUF 86.7 0.7 2.4E-05 42.6 5.0 46 117-163 107-152 (250)
44 3na7_A HP0958; flagellar bioge 86.5 18 0.00063 32.6 16.0 8 213-220 155-162 (256)
45 4ath_A MITF, microphthalmia-as 86.4 2.8 9.7E-05 33.3 7.6 44 151-205 38-81 (83)
46 1hjb_A Ccaat/enhancer binding 86.3 7.2 0.00025 31.0 10.0 39 177-229 40-78 (87)
47 1kd8_A GABH AIV, GCN4 acid bas 86.2 0.88 3E-05 31.2 3.9 29 153-181 2-30 (36)
48 3cvf_A Homer-3, homer protein 85.9 1.8 6.1E-05 34.1 6.2 37 184-220 17-53 (79)
49 3u59_A Tropomyosin beta chain; 85.5 12 0.00041 29.7 14.7 53 147-199 18-70 (101)
50 3c3g_A Alpha/beta peptide with 85.4 1.5 5.1E-05 29.5 4.7 27 154-180 2-28 (33)
51 2dfs_A Myosin-5A; myosin-V, in 85.1 8.8 0.0003 42.0 13.2 36 158-193 983-1018(1080)
52 2v71_A Nuclear distribution pr 85.0 15 0.0005 33.0 12.5 29 174-202 89-117 (189)
53 1gu4_A CAAT/enhancer binding p 84.9 7.2 0.00024 30.4 9.1 18 179-196 42-59 (78)
54 3a7p_A Autophagy protein 16; c 84.7 13 0.00045 32.5 11.7 39 158-196 95-133 (152)
55 2hy6_A General control protein 84.6 1.2 4E-05 30.2 3.9 28 153-180 2-29 (34)
56 2wq1_A General control protein 84.6 1.7 5.9E-05 29.2 4.7 27 154-180 2-28 (33)
57 2v71_A Nuclear distribution pr 84.5 19 0.00066 32.2 13.0 26 155-180 45-70 (189)
58 2bni_A General control protein 84.1 1.3 4.3E-05 30.1 3.9 28 153-180 2-29 (34)
59 3mq7_A Bone marrow stromal ant 83.7 5.6 0.00019 33.6 8.6 20 180-199 71-90 (121)
60 3qh9_A Liprin-beta-2; coiled-c 83.3 14 0.00047 29.3 10.2 58 160-217 20-77 (81)
61 1i84_S Smooth muscle myosin he 83.3 10 0.00035 41.4 12.8 41 154-194 859-899 (1184)
62 1uo4_A General control protein 83.2 1.4 5E-05 29.8 3.9 28 153-180 2-29 (34)
63 3he5_A Synzip1; heterodimeric 82.9 7.1 0.00024 27.7 7.5 15 209-223 32-46 (49)
64 3swk_A Vimentin; cytoskeleton, 82.5 11 0.00036 29.6 9.3 68 155-222 3-84 (86)
65 1i84_S Smooth muscle myosin he 82.5 8.1 0.00028 42.2 11.6 9 188-196 921-929 (1184)
66 1fmh_A General control protein 81.4 3 0.0001 27.6 4.8 29 154-182 3-31 (33)
67 3tnu_B Keratin, type II cytosk 80.8 12 0.00041 30.8 9.6 26 154-179 45-70 (129)
68 1nkp_B MAX protein, MYC proto- 80.7 2 6.9E-05 32.9 4.5 24 152-175 47-70 (83)
69 1wle_A Seryl-tRNA synthetase; 80.6 17 0.00057 36.7 12.3 64 158-228 83-157 (501)
70 3u1c_A Tropomyosin alpha-1 cha 80.6 20 0.00069 28.6 15.3 78 143-220 21-98 (101)
71 1go4_E MAD1 (mitotic arrest de 80.6 2.8 9.4E-05 34.4 5.5 26 152-177 19-44 (100)
72 4ati_A MITF, microphthalmia-as 80.5 0.6 2.1E-05 38.6 1.6 24 182-205 93-116 (118)
73 2c9l_Y EB1, zebra, BZLF1 trans 80.5 8.1 0.00028 28.9 7.5 23 137-159 7-29 (63)
74 3qne_A Seryl-tRNA synthetase, 79.7 6.6 0.00023 39.6 9.1 65 157-228 45-112 (485)
75 3cve_A Homer protein homolog 1 78.9 10 0.00036 29.3 8.0 36 153-188 8-43 (72)
76 3tnu_A Keratin, type I cytoske 78.8 11 0.00037 31.2 8.7 28 153-180 46-73 (131)
77 3a7o_A Autophagy protein 16; c 78.2 8.6 0.00029 30.0 7.3 44 158-201 31-74 (75)
78 1t2k_D Cyclic-AMP-dependent tr 78.0 6.9 0.00024 28.4 6.5 24 176-199 25-48 (61)
79 2w83_C C-JUN-amino-terminal ki 77.5 21 0.00072 28.1 9.3 46 157-202 7-59 (77)
80 4etp_A Kinesin-like protein KA 77.2 7.7 0.00026 37.8 8.5 47 171-224 15-61 (403)
81 2wt7_B Transcription factor MA 77.0 5.2 0.00018 32.1 6.0 32 169-200 51-82 (90)
82 2dq0_A Seryl-tRNA synthetase; 76.8 19 0.00064 35.7 11.2 64 158-228 44-110 (455)
83 3jsv_C NF-kappa-B essential mo 76.4 21 0.00072 29.0 9.4 54 137-190 8-64 (94)
84 2yy0_A C-MYC-binding protein; 75.9 5.3 0.00018 28.9 5.3 30 160-196 20-49 (53)
85 3oja_A Leucine-rich immune mol 75.6 31 0.0011 33.1 12.2 42 161-202 423-464 (487)
86 1nlw_A MAD protein, MAX dimeri 75.6 5.3 0.00018 30.9 5.5 30 151-180 46-75 (80)
87 3ghg_A Fibrinogen alpha chain; 75.5 10 0.00036 39.0 9.1 45 145-189 103-147 (562)
88 3bas_A Myosin heavy chain, str 75.2 22 0.00074 27.8 9.1 48 152-199 35-82 (89)
89 1ik9_A DNA repair protein XRCC 74.9 39 0.0013 30.4 11.9 66 152-220 139-205 (213)
90 3m9b_A Proteasome-associated A 74.6 3.8 0.00013 38.4 5.3 13 210-222 84-96 (251)
91 1wle_A Seryl-tRNA synthetase; 74.6 75 0.0026 32.0 15.5 58 125-186 39-104 (501)
92 2r2v_A GCN4 leucine zipper; co 73.9 4.5 0.00015 27.4 4.1 28 153-180 2-29 (34)
93 3he5_A Synzip1; heterodimeric 73.7 18 0.00062 25.6 7.3 43 153-195 4-46 (49)
94 1ses_A Seryl-tRNA synthetase; 73.5 53 0.0018 32.0 13.3 70 152-228 28-105 (421)
95 3i00_A HIP-I, huntingtin-inter 73.4 39 0.0013 28.1 11.8 11 210-220 70-80 (120)
96 1ci6_A Transcription factor AT 72.8 18 0.00061 26.7 7.6 28 175-202 25-52 (63)
97 1ic2_A Tropomyosin alpha chain 72.6 29 0.001 26.4 11.1 44 159-202 13-56 (81)
98 3u06_A Protein claret segregat 72.3 11 0.00037 37.0 8.1 54 162-222 6-59 (412)
99 1jcd_A Major outer membrane li 72.3 19 0.00065 26.2 7.4 27 154-180 6-32 (52)
100 3vmx_A Voltage-gated hydrogen 71.4 18 0.00062 26.1 7.0 35 158-192 3-37 (48)
101 3lss_A Seryl-tRNA synthetase; 70.9 17 0.00059 36.6 9.4 16 213-228 130-145 (484)
102 2dq0_A Seryl-tRNA synthetase; 70.1 75 0.0026 31.4 13.7 31 154-184 33-63 (455)
103 1a93_B MAX protein, coiled coi 70.0 6.6 0.00022 26.6 4.2 29 171-199 5-33 (34)
104 3q8t_A Beclin-1; autophagy, AT 69.4 41 0.0014 26.7 11.5 42 151-192 24-65 (96)
105 1jnm_A Proto-oncogene C-JUN; B 69.1 5.7 0.0002 29.0 4.2 25 176-200 25-49 (62)
106 3tnu_A Keratin, type I cytoske 69.1 47 0.0016 27.3 10.6 30 154-183 40-69 (131)
107 3m0d_C TNF receptor-associated 68.7 33 0.0011 25.4 9.1 32 150-181 4-35 (65)
108 4emc_A Monopolin complex subun 68.6 24 0.00081 31.9 8.8 45 152-203 13-57 (190)
109 3s4r_A Vimentin; alpha-helix, 68.5 32 0.0011 27.2 8.7 17 183-199 26-42 (93)
110 3qne_A Seryl-tRNA synthetase, 68.4 72 0.0025 32.1 13.3 77 152-231 33-112 (485)
111 1nkp_A C-MYC, MYC proto-oncoge 68.2 14 0.00048 28.9 6.5 34 152-199 52-85 (88)
112 3uux_B Mitochondrial division 67.7 51 0.0017 30.7 11.1 50 153-209 164-213 (242)
113 3u59_A Tropomyosin beta chain; 67.5 44 0.0015 26.4 15.3 67 152-218 30-96 (101)
114 1t6f_A Geminin; coiled-coil, c 67.3 8.9 0.0003 26.3 4.4 28 166-193 7-34 (37)
115 2oto_A M protein; helical coil 67.0 56 0.0019 27.4 11.7 31 155-185 53-83 (155)
116 1am9_A Srebp-1A, protein (ster 66.8 8.2 0.00028 29.7 4.8 20 178-197 55-74 (82)
117 1f5n_A Interferon-induced guan 66.8 74 0.0025 32.6 13.2 77 144-224 504-583 (592)
118 2yy0_A C-MYC-binding protein; 66.4 11 0.00038 27.3 5.1 18 182-199 21-38 (53)
119 1ses_A Seryl-tRNA synthetase; 66.2 26 0.00088 34.3 9.4 49 138-188 9-57 (421)
120 3m9b_A Proteasome-associated A 66.2 8.4 0.00029 36.1 5.6 20 156-175 58-77 (251)
121 3na7_A HP0958; flagellar bioge 65.9 75 0.0026 28.5 13.2 71 152-222 32-104 (256)
122 2v4h_A NF-kappa-B essential mo 65.9 57 0.002 27.1 10.9 46 139-184 32-80 (110)
123 1zme_C Proline utilization tra 65.8 5.4 0.00019 28.5 3.4 24 152-175 44-67 (70)
124 1dip_A Delta-sleep-inducing pe 65.0 6.7 0.00023 30.8 4.0 26 169-194 18-43 (78)
125 2oxj_A Hybrid alpha/beta pepti 64.3 12 0.0004 25.4 4.5 17 209-225 16-32 (34)
126 3tnu_B Keratin, type II cytosk 64.3 58 0.002 26.6 12.0 34 152-185 36-69 (129)
127 2kz5_A Transcription factor NF 64.1 0.57 2E-05 37.9 -2.3 23 129-152 65-87 (91)
128 4etp_A Kinesin-like protein KA 64.0 25 0.00085 34.2 8.7 46 152-197 10-55 (403)
129 2v66_B Nuclear distribution pr 63.9 61 0.0021 26.8 15.2 28 175-202 37-64 (111)
130 4emc_A Monopolin complex subun 62.9 64 0.0022 29.1 10.5 44 153-196 21-64 (190)
131 1dip_A Delta-sleep-inducing pe 62.6 6 0.00021 31.1 3.3 27 190-223 18-44 (78)
132 3mq9_A Bone marrow stromal ant 62.5 48 0.0016 31.6 10.3 66 152-222 397-464 (471)
133 2ocy_A RAB guanine nucleotide 61.9 80 0.0027 27.4 11.4 47 153-199 45-91 (154)
134 3a2a_A Voltage-gated hydrogen 61.8 22 0.00077 26.5 6.1 34 158-191 10-43 (58)
135 2xdj_A Uncharacterized protein 61.6 56 0.0019 25.5 9.1 40 153-192 21-60 (83)
136 2oa5_A Hypothetical protein BQ 61.5 4.4 0.00015 33.8 2.5 24 153-176 9-32 (110)
137 3nmd_A CGMP dependent protein 61.3 35 0.0012 26.4 7.4 28 151-178 39-66 (72)
138 3i00_A HIP-I, huntingtin-inter 61.2 34 0.0011 28.5 7.9 46 147-199 35-80 (120)
139 3c3f_A Alpha/beta peptide with 61.1 14 0.00047 25.0 4.4 18 209-226 16-33 (34)
140 1gd2_E Transcription factor PA 60.8 47 0.0016 25.3 8.0 42 153-201 23-64 (70)
141 2lw1_A ABC transporter ATP-bin 60.0 37 0.0013 26.1 7.5 48 152-199 22-75 (89)
142 3q0x_A Centriole protein; cent 59.9 39 0.0013 31.0 8.8 54 126-186 159-212 (228)
143 3m48_A General control protein 59.8 13 0.00044 25.0 4.0 17 209-225 15-31 (33)
144 4h22_A Leucine-rich repeat fli 58.9 45 0.0015 27.4 8.0 13 126-139 6-18 (103)
145 2fxo_A Myosin heavy chain, car 58.8 74 0.0025 26.1 10.7 50 174-223 70-119 (129)
146 3s9g_A Protein hexim1; cyclin 58.6 76 0.0026 26.1 9.6 39 164-202 35-73 (104)
147 2ocy_A RAB guanine nucleotide 58.6 92 0.0031 27.1 15.1 70 158-227 78-148 (154)
148 2wt7_A Proto-oncogene protein 58.3 51 0.0017 24.0 9.4 28 175-202 25-52 (63)
149 2v66_B Nuclear distribution pr 58.2 79 0.0027 26.1 13.3 49 154-202 37-85 (111)
150 4e61_A Protein BIM1; EB1-like 58.2 60 0.0021 26.7 8.7 35 162-196 14-48 (106)
151 2eqb_B RAB guanine nucleotide 57.7 59 0.002 26.4 8.5 49 152-200 12-60 (97)
152 3he5_B Synzip2; heterodimeric 57.4 50 0.0017 23.6 7.3 43 168-224 5-47 (52)
153 3lss_A Seryl-tRNA synthetase; 57.2 1.6E+02 0.0055 29.6 13.4 10 219-228 133-142 (484)
154 2wuj_A Septum site-determining 57.2 11 0.00037 27.4 3.7 28 152-179 27-54 (57)
155 2hy6_A General control protein 57.1 15 0.00053 24.8 4.1 18 209-226 16-33 (34)
156 2zxx_A Geminin; coiled-coil, c 56.9 25 0.00086 27.7 6.0 31 166-196 34-64 (79)
157 3q8t_A Beclin-1; autophagy, AT 56.9 71 0.0024 25.3 13.9 48 155-202 7-54 (96)
158 3c3g_A Alpha/beta peptide with 56.7 19 0.00063 24.2 4.4 18 209-226 15-32 (33)
159 3swk_A Vimentin; cytoskeleton, 56.5 53 0.0018 25.5 7.9 55 169-223 3-57 (86)
160 1uii_A Geminin; human, DNA rep 56.2 26 0.00088 27.9 6.0 29 166-194 46-74 (83)
161 3efg_A Protein SLYX homolog; x 56.0 44 0.0015 25.8 7.2 24 156-179 11-34 (78)
162 3vkg_A Dynein heavy chain, cyt 55.6 2E+02 0.007 35.5 15.9 15 149-163 1973-1987(3245)
163 2bni_A General control protein 55.3 16 0.00053 24.8 3.9 18 209-226 16-33 (34)
164 3ghg_A Fibrinogen alpha chain; 55.2 1E+02 0.0036 31.8 11.7 15 211-225 141-155 (562)
165 2wq1_A General control protein 55.1 21 0.00073 23.9 4.5 18 209-226 15-32 (33)
166 2dq3_A Seryl-tRNA synthetase; 55.0 15 0.00052 35.9 5.5 62 160-228 45-109 (425)
167 2er8_A Regulatory protein Leu3 54.6 6.7 0.00023 28.3 2.3 22 151-172 48-69 (72)
168 2j5u_A MREC protein; bacterial 54.2 7.2 0.00025 35.7 2.9 41 183-227 22-62 (255)
169 1joc_A EEA1, early endosomal a 54.0 76 0.0026 26.0 8.8 23 154-176 13-35 (125)
170 2zqm_A Prefoldin beta subunit 53.8 48 0.0016 25.8 7.4 24 142-165 24-47 (117)
171 1wt6_A Myotonin-protein kinase 53.6 81 0.0028 24.9 10.2 53 139-194 14-66 (81)
172 3cl3_D NF-kappa-B essential mo 53.5 23 0.0008 30.2 5.7 22 203-224 86-107 (130)
173 2b9c_A Striated-muscle alpha t 53.0 1.1E+02 0.0036 26.1 11.3 63 130-199 37-99 (147)
174 1wlq_A Geminin; coiled-coil; 2 52.9 85 0.0029 24.9 8.7 29 166-194 38-66 (83)
175 2dgc_A Protein (GCN4); basic d 52.8 22 0.00074 26.3 4.8 17 180-196 37-53 (63)
176 1deq_A Fibrinogen (alpha chain 52.6 1.4E+02 0.0049 29.5 11.8 14 211-224 144-157 (390)
177 1ic2_A Tropomyosin alpha chain 52.3 74 0.0025 24.1 10.8 54 146-199 14-67 (81)
178 1dh3_A Transcription factor CR 51.7 22 0.00076 25.6 4.6 26 175-200 24-49 (55)
179 3nmd_A CGMP dependent protein 51.4 45 0.0015 25.8 6.5 28 195-222 41-68 (72)
180 3vp9_A General transcriptional 51.0 30 0.001 27.8 5.7 37 186-225 49-85 (92)
181 2oto_A M protein; helical coil 50.3 1.1E+02 0.0038 25.5 11.8 15 182-196 59-73 (155)
182 2xdj_A Uncharacterized protein 50.2 89 0.003 24.4 10.4 32 168-199 22-53 (83)
183 3e98_A GAF domain of unknown f 50.0 75 0.0026 28.9 9.0 49 152-204 65-113 (252)
184 2dq3_A Seryl-tRNA synthetase; 49.4 51 0.0017 32.2 8.2 31 153-183 31-61 (425)
185 2w83_C C-JUN-amino-terminal ki 49.1 30 0.001 27.2 5.2 38 162-199 26-63 (77)
186 3s84_A Apolipoprotein A-IV; fo 49.0 1.6E+02 0.0056 27.1 13.0 84 140-226 164-249 (273)
187 1kd8_B GABH BLL, GCN4 acid bas 48.1 23 0.0008 24.2 3.9 15 211-225 18-32 (36)
188 3u06_A Protein claret segregat 47.5 60 0.0021 31.7 8.4 37 160-196 18-54 (412)
189 1uo4_A General control protein 47.5 29 0.00098 23.5 4.2 18 209-226 16-33 (34)
190 1nlw_A MAD protein, MAX dimeri 47.4 24 0.00084 27.1 4.5 16 182-197 63-78 (80)
191 2wvr_A Geminin; DNA replicatio 47.3 1.2E+02 0.0042 27.7 9.7 29 166-194 115-143 (209)
192 1deq_A Fibrinogen (alpha chain 46.7 46 0.0016 33.0 7.3 48 149-196 110-157 (390)
193 3oa7_A Head morphogenesis prot 46.3 68 0.0023 29.2 7.9 41 162-202 33-73 (206)
194 3htk_A Structural maintenance 46.3 74 0.0025 22.4 7.9 16 152-167 12-27 (60)
195 3plt_A Sphingolipid long chain 45.9 1.8E+02 0.0062 26.8 10.8 60 136-200 98-158 (234)
196 1jcd_A Major outer membrane li 45.5 79 0.0027 22.9 6.7 29 159-187 4-32 (52)
197 4fla_A Regulation of nuclear P 45.3 1.5E+02 0.005 25.4 11.4 30 139-168 66-95 (152)
198 1p9i_A Cortexillin I/GCN4 hybr 45.3 21 0.00071 23.3 3.1 16 183-198 9-24 (31)
199 2j5u_A MREC protein; bacterial 45.1 11 0.00036 34.6 2.5 8 185-192 48-55 (255)
200 3m91_A Proteasome-associated A 45.1 84 0.0029 22.6 7.0 20 156-175 13-32 (51)
201 1nkp_A C-MYC, MYC proto-oncoge 45.0 67 0.0023 24.9 6.8 14 208-221 73-86 (88)
202 1hlo_A Protein (transcription 44.8 19 0.00064 27.3 3.4 18 152-169 57-74 (80)
203 1lwu_C Fibrinogen gamma chain; 44.5 76 0.0026 30.4 8.4 16 157-172 17-32 (323)
204 4h22_A Leucine-rich repeat fli 44.2 1.3E+02 0.0045 24.7 10.8 12 211-222 68-79 (103)
205 1nkp_B MAX protein, MYC proto- 44.2 55 0.0019 24.7 6.1 15 183-197 64-78 (83)
206 2wuj_A Septum site-determining 43.7 20 0.00069 25.9 3.3 26 176-201 30-55 (57)
207 2eqb_B RAB guanine nucleotide 43.4 1.3E+02 0.0045 24.4 12.2 17 157-173 45-61 (97)
208 1gmj_A ATPase inhibitor; coile 42.9 1.2E+02 0.0042 24.0 9.4 8 140-147 25-32 (84)
209 1fxk_A Prefoldin; archaeal pro 42.9 62 0.0021 24.8 6.3 7 153-159 30-36 (107)
210 3bbp_D GRIP and coiled-coil do 42.2 22 0.00076 27.5 3.5 20 180-199 43-62 (71)
211 1fmh_A General control protein 42.1 34 0.0012 22.6 3.8 26 176-201 4-29 (33)
212 2ve7_A Kinetochore protein HEC 42.0 36 0.0012 32.1 5.6 20 160-179 186-205 (315)
213 1m1j_B Fibrinogen beta chain; 41.6 2.4E+02 0.0081 28.4 11.8 24 152-175 121-144 (464)
214 1fxk_C Protein (prefoldin); ar 41.2 92 0.0031 25.0 7.4 19 157-175 100-118 (133)
215 1ytz_T Troponin T; muscle, THI 40.7 1.5E+02 0.0051 24.2 10.9 14 143-156 19-32 (107)
216 1lwu_C Fibrinogen gamma chain; 40.5 62 0.0021 31.0 7.1 18 164-181 17-34 (323)
217 3htk_A Structural maintenance 40.2 94 0.0032 21.8 8.4 42 155-196 8-49 (60)
218 2dnx_A Syntaxin-12; snare, HAB 39.2 1E+02 0.0035 25.2 7.4 24 155-178 47-70 (130)
219 1p9i_A Cortexillin I/GCN4 hybr 39.1 30 0.001 22.5 3.2 23 156-178 3-25 (31)
220 1ik9_A DNA repair protein XRCC 38.8 2.2E+02 0.0074 25.6 12.6 61 152-212 125-187 (213)
221 2oa5_A Hypothetical protein BQ 38.5 17 0.00057 30.3 2.4 24 175-198 10-33 (110)
222 2r2v_A GCN4 leucine zipper; co 37.9 51 0.0017 22.3 4.2 18 209-226 16-33 (34)
223 2xu6_A MDV1 coiled coil; prote 37.8 71 0.0024 24.7 5.7 45 154-205 9-53 (72)
224 2zvf_A Alanyl-tRNA synthetase; 37.8 91 0.0031 25.7 7.0 11 171-181 30-40 (171)
225 1zxa_A CGMP-dependent protein 37.6 50 0.0017 25.2 4.8 31 149-179 22-52 (67)
226 2akf_A Coronin-1A; coiled coil 37.1 44 0.0015 22.1 3.7 23 156-178 3-25 (32)
227 1wt6_A Myotonin-protein kinase 36.9 1.5E+02 0.0053 23.3 7.9 11 211-221 62-72 (81)
228 2e7s_A RAB guanine nucleotide 36.9 43 0.0015 28.6 4.8 16 207-222 116-131 (135)
229 3uux_B Mitochondrial division 36.1 2.7E+02 0.0093 25.9 12.0 51 151-201 176-226 (242)
230 2xnx_M M protein, M1-BC1; cell 35.3 11 0.00037 32.8 0.8 47 178-224 85-131 (146)
231 4b4t_K 26S protease regulatory 35.2 64 0.0022 31.6 6.4 54 162-222 38-91 (428)
232 3viq_B Mating-type switching p 34.7 1.4E+02 0.0047 23.7 7.1 22 156-177 5-26 (85)
233 2i1j_A Moesin; FERM, coiled-co 34.2 72 0.0025 32.4 6.8 38 154-191 337-374 (575)
234 3he4_A Synzip6; heterodimeric 34.1 57 0.002 23.6 4.3 31 155-185 20-50 (56)
235 2fxo_A Myosin heavy chain, car 34.1 1.9E+02 0.0065 23.5 15.9 37 156-192 66-102 (129)
236 3bas_A Myosin heavy chain, str 33.7 1.6E+02 0.0056 22.7 13.1 44 152-195 14-57 (89)
237 1gk7_A Vimentin; intermediate 33.7 58 0.002 22.1 4.2 19 178-196 18-36 (39)
238 1gk6_A Vimentin; intermediate 33.6 1.2E+02 0.0041 21.9 6.2 29 157-185 5-33 (59)
239 4gkw_A Spindle assembly abnorm 33.4 1.9E+02 0.0064 25.2 8.2 58 154-218 100-157 (167)
240 2efr_A General control protein 33.4 2.4E+02 0.008 24.4 15.2 15 208-222 140-154 (155)
241 2odv_A Plectin 1, HD1; plakin 33.2 2.3E+02 0.0079 25.5 9.4 34 129-163 102-135 (235)
242 3trt_A Vimentin; cytoskeleton, 32.8 1.5E+02 0.005 21.8 9.3 13 187-199 56-68 (77)
243 2fic_A Bridging integrator 1; 32.0 2.5E+02 0.0086 24.3 12.6 26 171-199 184-209 (251)
244 1uix_A RHO-associated kinase; 32.0 1.7E+02 0.0059 22.4 8.2 31 157-187 2-32 (71)
245 3q0x_A Centriole protein; cent 31.9 2.1E+02 0.0073 26.1 8.9 38 169-206 174-212 (228)
246 3trt_A Vimentin; cytoskeleton, 31.4 1.5E+02 0.0053 21.7 8.4 7 214-220 69-75 (77)
247 1s1c_X RHO-associated, coiled- 31.4 1.8E+02 0.0061 22.4 8.6 31 156-186 3-33 (71)
248 2nrj_A HBL B protein; enteroto 30.7 2.3E+02 0.0079 26.8 9.3 72 151-225 122-193 (346)
249 2e7s_A RAB guanine nucleotide 29.7 59 0.002 27.8 4.5 46 154-199 34-79 (135)
250 3w03_C DNA repair protein XRCC 29.6 84 0.0029 28.0 5.6 30 152-181 145-174 (184)
251 4dnd_A Syntaxin-10, SYN10; str 29.5 2.1E+02 0.0071 23.7 7.8 19 206-224 110-128 (130)
252 3vhx_B Kinesin-like protein KI 29.3 24 0.00082 29.8 1.9 18 9-26 7-24 (120)
253 2p22_A Suppressor protein STP2 29.2 1.5E+02 0.0051 26.1 7.1 19 123-141 23-41 (174)
254 2z5i_A TM, general control pro 29.2 1.4E+02 0.0049 21.2 5.8 20 156-175 9-28 (52)
255 3gp4_A Transcriptional regulat 28.8 2.4E+02 0.0083 23.1 9.1 8 130-138 63-70 (142)
256 3jsv_C NF-kappa-B essential mo 28.8 2.3E+02 0.0079 22.9 10.4 13 188-200 41-53 (94)
257 1tu3_F RAB GTPase binding effe 28.6 34 0.0011 27.0 2.5 55 152-213 12-69 (79)
258 4b4t_K 26S protease regulatory 28.4 87 0.003 30.7 6.1 25 154-178 44-68 (428)
259 3plt_A Sphingolipid long chain 28.4 3E+02 0.01 25.4 9.3 47 135-181 114-160 (234)
260 3lay_A Zinc resistance-associa 28.1 1.6E+02 0.0055 25.7 7.1 10 124-133 66-75 (175)
261 1m1j_A Fibrinogen alpha subuni 27.9 4.4E+02 0.015 26.8 11.0 65 134-198 93-157 (491)
262 3ljm_A Coil Ser L9C; de novo d 27.8 1.1E+02 0.0039 19.8 4.5 17 156-172 5-21 (31)
263 4gkw_A Spindle assembly abnorm 27.8 3E+02 0.01 23.9 11.6 31 154-184 48-78 (167)
264 3he5_B Synzip2; heterodimeric 27.6 1.7E+02 0.0058 20.9 6.2 27 155-181 20-46 (52)
265 3azd_A Short alpha-tropomyosin 26.8 21 0.0007 24.1 0.9 29 153-181 5-33 (37)
266 2p4w_A Transcriptional regulat 26.8 3.1E+02 0.011 23.7 9.2 22 207-228 164-185 (202)
267 3lay_A Zinc resistance-associa 26.1 1.2E+02 0.0042 26.5 6.0 10 90-99 4-13 (175)
268 2w6b_A RHO guanine nucleotide 25.8 1.5E+02 0.0052 21.9 5.5 16 157-172 15-30 (56)
269 1s1c_X RHO-associated, coiled- 25.7 2.3E+02 0.0078 21.8 7.5 8 209-216 44-51 (71)
270 1fxk_C Protein (prefoldin); ar 25.6 2.6E+02 0.0087 22.3 8.0 32 155-186 91-122 (133)
271 1fmh_B General control protein 25.5 1.2E+02 0.0041 19.9 4.3 19 182-200 10-28 (33)
272 4dk0_A Putative MACA; alpha-ha 25.0 3.8E+02 0.013 24.1 10.4 13 121-133 57-69 (369)
273 3he4_B Synzip5; heterodimeric 24.9 1.8E+02 0.0061 20.3 5.8 14 152-165 10-23 (46)
274 2zvf_A Alanyl-tRNA synthetase; 24.8 1E+02 0.0035 25.4 5.1 24 156-179 29-52 (171)
275 2zdi_C Prefoldin subunit alpha 24.8 1.2E+02 0.004 25.1 5.5 6 128-133 95-100 (151)
276 2l5g_B Putative uncharacterize 24.7 1.6E+02 0.0054 20.7 5.1 29 156-184 6-34 (42)
277 2jmh_A BLO T 5, mite allergen 24.6 3E+02 0.01 23.1 7.8 21 159-179 26-46 (119)
278 1hwt_C Protein (heme activator 24.5 41 0.0014 24.4 2.3 22 150-171 56-77 (81)
279 3w03_C DNA repair protein XRCC 24.3 1.6E+02 0.0055 26.2 6.5 33 149-181 149-181 (184)
280 2ve7_C Kinetochore protein NUF 24.0 31 0.0011 31.6 1.9 15 185-199 160-174 (250)
281 3ra3_A P1C; coiled coil domain 23.7 1.3E+02 0.0044 19.2 4.1 10 167-176 8-17 (28)
282 4e61_A Protein BIM1; EB1-like 23.7 3E+02 0.01 22.5 12.1 31 172-202 10-40 (106)
283 3t98_B Nucleoporin NUP58/NUP45 23.6 2.7E+02 0.0094 22.0 9.2 9 213-221 70-78 (93)
284 3a2a_A Voltage-gated hydrogen 23.3 1.7E+02 0.006 21.7 5.4 21 184-204 15-35 (58)
285 3umh_A Amyloid beta A4 protein 23.2 4.3E+02 0.015 24.1 11.8 72 151-225 42-113 (211)
286 2l5g_A GPS2 protein, G protein 23.2 90 0.0031 21.5 3.5 17 153-169 16-32 (38)
287 4h8s_A DCC-interacting protein 23.1 2.6E+02 0.009 26.2 8.2 13 90-102 4-16 (407)
288 2gkw_A TNF receptor-associated 23.1 1.3E+02 0.0046 25.5 5.6 15 155-169 3-17 (192)
289 2aze_A Transcription factor DP 23.1 1.7E+02 0.0059 25.5 6.3 19 146-164 20-38 (155)
290 2b9b_A Fusion glycoprotein F0; 23.0 1.8E+02 0.0063 29.6 7.4 21 209-229 466-486 (497)
291 2lw1_A ABC transporter ATP-bin 22.7 2.5E+02 0.0087 21.3 6.7 24 158-181 21-44 (89)
292 3ghg_C Fibrinogen gamma chain; 22.6 2.8E+02 0.0094 27.5 8.4 12 211-222 122-133 (411)
293 3tq2_A KE1; parallel three hel 22.5 1.8E+02 0.0061 19.4 5.5 28 171-198 6-33 (36)
294 1x8y_A Lamin A/C; structural p 22.4 2.7E+02 0.0091 21.4 11.1 7 215-221 70-76 (86)
295 1lrz_A FEMA, factor essential 22.4 2.8E+02 0.0094 26.3 8.2 24 152-175 247-270 (426)
296 3ol1_A Vimentin; structural ge 22.2 3.1E+02 0.011 22.1 15.0 13 209-221 91-103 (119)
297 2b5u_A Colicin E3; high resolu 21.9 4.9E+02 0.017 26.9 10.1 22 204-225 405-426 (551)
298 3v86_A De novo design helix; c 21.6 1.3E+02 0.0043 19.1 3.7 15 157-171 5-19 (27)
299 2pnv_A Small conductance calci 21.6 1.2E+02 0.004 21.2 4.0 10 191-200 20-29 (43)
300 1zhc_A Hypothetical protein HP 21.6 2.1E+02 0.007 21.6 5.8 44 155-199 20-63 (76)
301 2ke4_A CDC42-interacting prote 21.4 3.1E+02 0.011 21.8 7.5 51 152-202 22-77 (98)
302 3mq1_A Mite allergen DER P 5; 21.4 2.8E+02 0.0096 22.8 6.8 22 158-179 10-31 (103)
303 2z5i_A TM, general control pro 21.2 2.3E+02 0.0078 20.2 5.8 37 140-176 7-43 (52)
304 3viq_B Mating-type switching p 21.2 3.1E+02 0.011 21.7 7.9 23 152-174 8-30 (85)
305 1r8e_A Multidrug-efflux transp 21.0 2E+02 0.0069 25.0 6.5 11 129-140 66-76 (278)
306 1fzc_C Fibrin; blood coagulati 20.6 50 0.0017 31.6 2.6 25 154-178 6-30 (319)
307 4ani_A Protein GRPE; chaperone 20.6 4.2E+02 0.014 23.9 8.6 56 154-209 61-116 (213)
308 3c9i_A Tail needle protein GP2 20.3 5.1E+02 0.018 23.9 11.1 50 154-203 86-135 (242)
309 2xv5_A Lamin-A/C; structural p 20.2 2.9E+02 0.0099 21.0 7.7 10 213-222 56-65 (74)
310 3vem_A Helicase protein MOM1; 20.0 3.8E+02 0.013 22.3 8.4 27 148-174 57-83 (115)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.49 E-value=3.4e-14 Score=105.03 Aligned_cols=52 Identities=31% Similarity=0.514 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDT 182 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~ 182 (332)
||.+ |+++||+||++||+||++|+++||.+|..|+.||..|..++..|+..+
T Consensus 1 kr~r-R~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREV-RLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888 999999999999999999999999999999999999999999887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.32 E-value=7.8e-12 Score=94.12 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
+||.+ |+.+||+||++||+||++|+.+|+.+|..|+.+|..|..+|..|+.++..|
T Consensus 1 Ekr~r-rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 1 EKRRI-RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889 999999999999999999999999999999999999999987776554443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.29 E-value=1.2e-11 Score=92.32 Aligned_cols=55 Identities=29% Similarity=0.520 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
||.+ |+.+||+||++||+||++|+++||.+|..|+.+|..|..+|..|+.++..|
T Consensus 1 kR~~-r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 1 KRRK-FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788 999999999999999999999999999999999999999988776554443
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.15 E-value=9.6e-11 Score=87.71 Aligned_cols=53 Identities=28% Similarity=0.503 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 183 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~ 183 (332)
|+.+ |..+||+||++||+||++|+++||.+|..|+.+|..|..++..|+.++.
T Consensus 1 K~er-rr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 1 KAER-KRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556 8889999999999999999999999999999999999999887765443
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.02 E-value=5.2e-10 Score=84.67 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 137 LANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 137 LaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.+||+||+|||+||++|+.+||.+|..|+.+|..|..++..|...
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999999988887654
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.93 E-value=2.3e-09 Score=80.90 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
|+.+ ++.+||.||+|+|+||+.++++|+.+++.|+.+|..|..++..|+.++..|
T Consensus 2 k~~r-Kr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 2 KKLK-KMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHh-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677 888999999999999999999999999999999999999998776554433
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.87 E-value=5.1e-09 Score=81.11 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
.++...| |...||.|++..|+||.+||.+||.+|..|+.++..|..+...|..++..|..||..||
T Consensus 5 ~~~~~~k-R~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 5 DQEPSSK-RKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred ccchHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455678 89999999999999999999999999999999988887777777777777777776653
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.41 E-value=1.7e-06 Score=68.19 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTD 184 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~ 184 (332)
.|++-.. |..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|..++..
T Consensus 12 ~d~~Y~~-rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 12 HSDEYKI-RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp TCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 67889999999999999999999999999999999999888876654433
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.38 E-value=1.9e-06 Score=69.14 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 127 VDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 127 ~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.|++... |..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|+.+
T Consensus 12 ~d~~Y~~-rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 12 HSDEYKI-RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp TSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 77899999999999999999999999999999999998888765443
No 10
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.15 E-value=1.6e-05 Score=64.32 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=52.9
Q ss_pred cCChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 115 AMDPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 115 ~m~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
-++.+....| |..| |-++||-+|+-+|.||...+.+||.++..|+.+...|..++..+. .|-..+|.
T Consensus 17 gls~eev~~l-----Kq~R-RtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~-------~e~d~~k~ 83 (90)
T 2wt7_B 17 GFTKDEVIRL-----KQKR-RTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA-------RERDAYKV 83 (90)
T ss_dssp TCCHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CCCHHHHHHH-----HHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3445555443 5555 999999999999999999999999999988877777776655544 45555555
Q ss_pred HHHHH
Q 020026 195 RLQAM 199 (332)
Q Consensus 195 RLqaL 199 (332)
++++|
T Consensus 84 k~~~L 88 (90)
T 2wt7_B 84 KSEKL 88 (90)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55443
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.09 E-value=1.3e-07 Score=78.61 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=44.4
Q ss_pred cCChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 115 AMDPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 115 ~m~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
.++.+++.+| |..| |.++||.+|+.||.||+..+++||.++..|+.+...|..+...+
T Consensus 27 ~Ls~~e~~~l-----K~~R-R~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l 84 (107)
T 3a5t_A 27 GLSKEEIIQL-----KQRR-RTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASM 84 (107)
T ss_dssp TCCHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHH
T ss_pred CCCHHHHHHH-----HHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543 6777 99999999999999999999999998888776666665444433
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00043 Score=48.96 Aligned_cols=39 Identities=36% Similarity=0.578 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
|.|+.+||.+++.|+..|++|.++++.|++ ||..|++-|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~-------EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQN-------ENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHh
Confidence 579999999999999999999999988765 555555433
No 13
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.33 E-value=0.065 Score=40.61 Aligned_cols=40 Identities=35% Similarity=0.486 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
+..-|.||++|..-|..|+.++..+|+....|..||..|+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4456889999999999999999999999999999999985
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.99 E-value=0.58 Score=37.15 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
.-++.||.||+.+-..++-|..++..|+.++..|..+|.+++..-..+..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~ 55 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35678888888887777777777777777777777777776555444443
No 15
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=94.63 E-value=0.0047 Score=50.10 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELER 159 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~ 159 (332)
-|.+| |..+||.+|+++|.||...+++|+.
T Consensus 61 ir~~R-RR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 61 IRKIR-RRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 57788 9999999999999999999988875
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.76 E-value=0.84 Score=36.22 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
|.-|.-++..|+.+|.+|..+...+......|..||..|+...
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555666555543
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.75 E-value=0.63 Score=39.65 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.++.++.|+.+++.+..|+..|..++..++..+..+..++.+|+.++..|+.+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888888888888888888888888888777665
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.76 E-value=1.4 Score=43.20 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDT-------TDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~-------~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
+.|++.++.++.....+..++..++++. ..+..|..+++.+++....+...-...+..+++|+..|...+..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444455555555444444444444444 33444444444444443333221112334444555555554444
No 19
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.65 E-value=1.6 Score=34.81 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTT-----DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 222 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~-----~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~ 222 (332)
.||..|+.+|..|..++..++.... ....+-..|+.+|..+.....--....+-|..++.+||.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777766654322 234555666666655554422222344446677777764
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.65 E-value=2.9 Score=40.93 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 162 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ-------AMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 162 q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq-------aLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
+.+..+...++.+.+.+.+++..+..+-.+++..++ .+|.+..-.......+++|.+.++...-+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544433333333 33333222333455566666665554433
No 21
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.26 E-value=0.51 Score=36.77 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
..|.+||.++..++..+.+|...|+.-+++...|..+.+.|..|+..++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688999999999999999999998888888888888888877776664
No 22
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.98 E-value=4 Score=31.61 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.++..|++.++.+|..|..+|..++.+...-..+...++..|..+-..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888999988888888777777777776666555433
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.82 E-value=4.8 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 170 TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 170 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+...+..|.+..+....-...|..++++|..+
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555433
No 24
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.70 E-value=2 Score=33.85 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+++..+++.++.+|..|..+|..++.+...-..+...++..|..+-+.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888888777777777776666555444
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.70 E-value=1.6 Score=53.01 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVER 219 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~Evqr 219 (332)
.+.+++..+.+...|.++|+.|+.++..+..|...|+..++..+......+.|.+.|..|-.|
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 334445556666677777778888888888888888888888877766666677777655443
No 26
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=90.32 E-value=1.5 Score=31.45 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+||.+|..|+.-...|..+++.|-.+ ..+-...||+||..||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 57788888777777777777666443 455667899999988865
No 27
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=90.27 E-value=1.5 Score=32.21 Aligned_cols=43 Identities=28% Similarity=0.351 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.+.|-++|..|..||+.|+.++..--.+...|+.|-..+|.-+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 3678899999999999999999887777888888777776544
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.17 E-value=6.7 Score=34.77 Aligned_cols=39 Identities=10% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
.+|...++.++..+..|..++..|+.....|..+...|.
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444444444443
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.14 E-value=1.5 Score=30.97 Aligned_cols=21 Identities=43% Similarity=0.461 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSA 173 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ 173 (332)
...+||.+|.+|+.||..|+.
T Consensus 18 ~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 345666666666666666654
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.12 E-value=1.7 Score=38.06 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
-|..|+.++..|+.++..|...+..-.+.+..|..|...|..++..+|.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666654443333344444444444333333333
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.05 E-value=7.3 Score=34.51 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 142 SAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 142 SA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.=++.|-+-.+.+.+|+.++..|+.|...+...+..+ ..+|+.|-.+|..+|..
T Consensus 80 qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 80 AERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3345566666777777777777777777777665544 45555555555555544
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.75 E-value=8 Score=30.95 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 147 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 147 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
+..-....+.++.+++.+...+..+..+|..|++.+..|..+-..+..+|..
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666666666666655555555543
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.52 E-value=0.5 Score=31.85 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
+..||.||..|-.+|+.|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567999999999999999999887753
No 34
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.14 E-value=0.64 Score=31.49 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
.+..||.||..|-.+|..|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467899999999999999998887664
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.11 E-value=11 Score=41.13 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 020026 180 RDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 180 r~~~~L~sEN~eLK~RLqaLE 200 (332)
.....|..||..|++++..|+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666655555555
No 36
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.87 E-value=2.1 Score=35.32 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSA-------QLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~-------ql~~Lqr~~~~L~sEN~eLK 193 (332)
+||+++..|+.||..|.. +|..|+.+...|.+||..|+
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 466666666666655554 44445555555555555543
No 37
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=87.85 E-value=1.8 Score=33.83 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
++||.||..|+.-...|..+++.|..+ ..+-...||+||..||.+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 457888888877777777777666443 45566789999999987654
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.74 E-value=16 Score=34.86 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 221 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk 221 (332)
+.|.+++....+++++.++.-..|-.|+.. |..+..+-..|++.+|.+..-..+..+.+++||.++|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555555555555543 4444444445888888886666677777888998887
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.48 E-value=4.9 Score=34.08 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
+.+++++.++..|..+...+..++..+.+++..|..++..|..++..||
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555666666666655555554
No 40
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.14 E-value=1 Score=30.80 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.+..||.||..|-.+++.|..+++.|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999999999999887754
No 41
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.89 E-value=1.9 Score=35.29 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR--------------LQAMEQQAQLRDALNEALKKEVE 218 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R--------------LqaLEqq~~Lrdalne~L~~Evq 218 (332)
-+..|..++..|+.|+..|..++..|+.+. |+..|+-. ..+...+. ..-..+.|++||+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----e~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~--~~~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL-----ERRALQGDYDQSRTKVLHMSLNPTSVARQR--LREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSSCCSCCCTTTEEEEEESSCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccCCccCeeeeecCChHHHHHHH--HHHHHHHHHHHHH
Confidence 456666777777777777776666654432 22111000 01111111 1135678889999
Q ss_pred HHHHHhccCC
Q 020026 219 RLKVATGEMM 228 (332)
Q Consensus 219 rLk~atge~~ 228 (332)
+||..+-.+-
T Consensus 86 rLr~~v~~lE 95 (100)
T 1go4_E 86 RLRGLLRAME 95 (100)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHh
Confidence 9998876553
No 42
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.88 E-value=0.84 Score=30.89 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.+..||.||..|-.++..|..+++.|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4678999999999999999998887653
No 43
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=86.73 E-value=0.7 Score=42.62 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=28.9
Q ss_pred ChhHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 117 DPDKLAELWTVDPKRAKSRILANRQSAARSKERKARYISELERKVQT 163 (332)
Q Consensus 117 ~~e~LaEla~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~ 163 (332)
..=.+.+|-.-++||.+ |+|+-=.-=.|-|+-|..-++++-.+.+.
T Consensus 107 ~DFtl~DL~kP~~~Rt~-~iLSalINF~~FRE~~~~~~~e~~~~~e~ 152 (250)
T 2ve7_C 107 NDFETADILCPKAKRTS-RFLSGIINFIHFREACRETYMEFLWQYKS 152 (250)
T ss_dssp CCCCHHHHHSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCcHhHhcCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667778899999 99876555556555555544444444333
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.48 E-value=18 Score=32.61 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 020026 213 LKKEVERL 220 (332)
Q Consensus 213 L~~EvqrL 220 (332)
+.+++..|
T Consensus 155 ~~~e~~~l 162 (256)
T 3na7_A 155 IKETQQII 162 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 45
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=86.35 E-value=2.8 Score=33.29 Aligned_cols=44 Identities=32% Similarity=0.435 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
-.||..|..+++.+..+.. +...|...|+.|..|+|.||.|+++
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4788877776665544433 3346789999999999999998864
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.26 E-value=7.2 Score=30.97 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 020026 177 LFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMT 229 (332)
Q Consensus 177 ~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~~ 229 (332)
.++.....|..||..|+.+|+ .|+.|+..|+....++|+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~--------------~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCcH
Confidence 344555566666766666553 455666677776666664
No 47
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.18 E-value=0.88 Score=31.16 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.+..||.||..|-.+++.|..+++.|+.-
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35689999999999999999988877643
No 48
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=85.91 E-value=1.8 Score=34.14 Aligned_cols=37 Identities=41% Similarity=0.475 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 184 DLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 184 ~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
.+..+|..|+.+++.++++..=.....+.++.|+.+|
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555333333344444444443
No 49
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.51 E-value=12 Score=29.66 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 147 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 147 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+..-....+.+|.+++.+...+..+..+|..|++.+..|..+-..+..+|...
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777777777777777777776666666665555555444
No 50
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.42 E-value=1.5 Score=29.54 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
+..||.||..|-.+|..|..+++.|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 568999999999999999988887653
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.12 E-value=8.8 Score=42.03 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
+.+|..|+.|+..|.+++..+.++...+...+.+++
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.04 E-value=15 Score=33.04 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 174 QLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 174 ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+++.|+.++..|...+..|+.+|..||+.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777777777777666665
No 53
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=84.86 E-value=7.2 Score=30.38 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=8.5
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 020026 179 QRDTTDLSTENTELKLRL 196 (332)
Q Consensus 179 qr~~~~L~sEN~eLK~RL 196 (332)
+.....|..||..|+.++
T Consensus 42 ~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555554444
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.68 E-value=13 Score=32.47 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
..-++.|+.|...|..++..++.....|..||..|-.|.
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777788888888888888888888887775
No 55
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=84.62 E-value=1.2 Score=30.22 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.+..||.+|..|-.+|..|..+++.|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4578999999999999999998887753
No 56
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=84.56 E-value=1.7 Score=29.23 Aligned_cols=27 Identities=11% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
+..||.||..|-.++..|..+++.|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999999998887653
No 57
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.45 E-value=19 Score=32.25 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.+||..+..++..+..|..++..|..
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333
No 58
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=84.11 E-value=1.3 Score=30.07 Aligned_cols=28 Identities=11% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.+..||.||..|-.++..|..+++.|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678999999999999999998887653
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.73 E-value=5.6 Score=33.64 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=9.3
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 020026 180 RDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 180 r~~~~L~sEN~eLK~RLqaL 199 (332)
.....|..|+..|+++|+..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444433
No 60
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=83.34 E-value=14 Score=29.33 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEV 217 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~Ev 217 (332)
+...|-.|...|+-+|+.+..+...-.-.-+.=|..|..|.++...+++-.+.|..++
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444455555444443333333333334455556555555665555555443
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=83.30 E-value=10 Score=41.41 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
+.+|+.++..|+.+...+...+..++.+...|..+...++.
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 62
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.23 E-value=1.4 Score=29.78 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.+..||.||..|-.+|..|..+++.|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3568999999999999999998887653
No 63
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=82.86 E-value=7.1 Score=27.72 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 209 LNEALKKEVERLKVA 223 (332)
Q Consensus 209 lne~L~~EvqrLk~a 223 (332)
+...|.+||..||..
T Consensus 32 liaylekeianlrkk 46 (49)
T 3he5_A 32 LIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666666654
No 64
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=82.54 E-value=11 Score=29.61 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRD--------------TTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~--------------~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
.+|..++..+..++..|..++.-++.. ...+..+-..||.-+........=-++..+.|++|+.-|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444333322 223333444444444444333222235667788888776
Q ss_pred HH
Q 020026 221 KV 222 (332)
Q Consensus 221 k~ 222 (332)
|.
T Consensus 83 kk 84 (86)
T 3swk_A 83 KK 84 (86)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.45 E-value=8.1 Score=42.22 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 020026 188 ENTELKLRL 196 (332)
Q Consensus 188 EN~eLK~RL 196 (332)
+..+|+.++
T Consensus 921 ~~~~Le~~l 929 (1184)
T 1i84_S 921 KKQELEEIL 929 (1184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 66
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=81.39 E-value=3 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDT 182 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~ 182 (332)
+..||.+|.+.+.||-+|..+++.|+.++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45678888888888888887777766543
No 67
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.75 E-value=12 Score=30.76 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
|..|+.+++.|...+..|...|..++
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455555555555555555554443
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.71 E-value=2 Score=32.85 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
.||..|+.+++.|+.+...|..++
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577766666666655544444333
No 69
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.64 E-value=17 Score=36.72 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQR-----------DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGE 226 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr-----------~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge 226 (332)
..+++.|+.+.+.++.+|..+.+ +...|..+-++|+.+|..++ .....+.+++..+-..++-
T Consensus 83 ~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~-------~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLY-------PKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCC
Confidence 33444444555555555544332 12234444444444444443 2333444555555554444
Q ss_pred CC
Q 020026 227 MM 228 (332)
Q Consensus 227 ~~ 228 (332)
++
T Consensus 156 ~~ 157 (501)
T 1wle_A 156 QT 157 (501)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 70
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=80.62 E-value=20 Score=28.59 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 143 AARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERL 220 (332)
Q Consensus 143 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrL 220 (332)
|..--..-..-+..++.+...+..++..|..++..++.++..+...-...+..|..-+....-.++-+..|..-|+-|
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445566666666666666666666666666666655555555555555555444445555565555433
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.55 E-value=2.8 Score=34.38 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
+-|+.|+.+...|..++..|..+|..
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655543
No 72
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=80.51 E-value=0.6 Score=38.63 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 182 TTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
...|..+|..|..+|+.||.+++.
T Consensus 93 ~~~l~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999887753
No 73
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=80.50 E-value=8.1 Score=28.88 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 137 LANRQSAARSKERKARYISELER 159 (332)
Q Consensus 137 LaNReSA~RSReRKkqyieeLE~ 159 (332)
-+||.+++++|.|=++.++-...
T Consensus 7 yknr~asrk~rakfkn~lqh~r~ 29 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYRE 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999998876654443
No 74
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=79.75 E-value=6.6 Score=39.64 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRD---TTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~---~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
|..+++.|+.+.+.++.+|..+.+. ...|..+-++|+.+|..++.+. ..+.+++..+-..++-++
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~-------~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKE-------AEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCCC
Confidence 3344555555555556555554332 3456666667776666665443 234445555544444444
No 75
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=78.91 E-value=10 Score=29.29 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE 188 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sE 188 (332)
.+.++|.+-+.|+.....|..++..-+.+-..+..|
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444443334333
No 76
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.83 E-value=11 Score=31.19 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
-|..|+.+++.+...+..|...|..++.
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445555555555555555555544433
No 77
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=78.25 E-value=8.6 Score=30.00 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
|.++..|+....-=..-...|.-+..++..||+.|.+||+.|.+
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 33444444433333444456667777888999999999988754
No 78
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.03 E-value=6.9 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=12.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..|+.....|..+|..|+.++..|
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444
No 79
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=77.48 E-value=21 Score=28.07 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQL-------TLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql-------~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.-++|..|-.||++|...- ..|..+.+.|..|+..|+..+.++.+.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455666666666665432 345566777777888887777777655
No 80
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.18 E-value=7.7 Score=37.80 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
|.+++..|++....+..++.+|++++... +.+...|..+++.||.-+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKE-------ETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCe
Confidence 33333333333344445555554444332 233355566777776543
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.96 E-value=5.2 Score=32.15 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
..|..++..|+.+...|..||..++..+..+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666666655554443
No 82
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=76.76 E-value=19 Score=35.69 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRD---TTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~---~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
..+++.|+.+.+.++.+|..+.+. ...|..+-++|+.+|..++.+ ...+.+++..+-..++-++
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE-------VEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCC
Confidence 344445555555555555443321 334555555666655555433 2344455555555554444
No 83
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=76.36 E-value=21 Score=28.95 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHH
Q 020026 137 LANRQSAARSKERKARYISELERKVQTLQ---TEATTLSAQLTLFQRDTTDLSTENT 190 (332)
Q Consensus 137 LaNReSA~RSReRKkqyieeLE~kVq~Lq---~ENs~Ls~ql~~Lqr~~~~L~sEN~ 190 (332)
..|-.+|-..=..|+..|++|..++..+. ..+.-|.+|+..+..++..=.+...
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE 64 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 64 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777778888888888887777 5555677788777776654443333
No 84
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.92 E-value=5.3 Score=28.93 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.|..|+.||.+|+.++ ..|..++.+|+.+|
T Consensus 20 d~eaLk~E~~eLk~k~-------~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKY-------EAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3444444444444443 34445555555544
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.62 E-value=31 Score=33.06 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 161 VQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 161 Vq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.+.++.|...+.......+++...|..||..|+.-++.+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 333444444444555555555666666666666655555444
No 86
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=75.55 E-value=5.3 Score=30.87 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
..||..|+.+.+.|+.++..|..+...|..
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888777776666555544443
No 87
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.49 E-value=10 Score=39.00 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020026 145 RSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN 189 (332)
Q Consensus 145 RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN 189 (332)
.....+.+|.++||++++.|+.++..-..+|..||..+..+..+.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666555555555555444443333
No 88
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.19 E-value=22 Score=27.77 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
.-..+||.+...|..+.+.|..+++..+..+..|.....+|...|..+
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777877877777777777777777777777776666555
No 89
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=74.92 E-value=39 Score=30.43 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALKKEVERL 220 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdalne~L~~EvqrL 220 (332)
+.+..|..++..|+.+...|.+++..+.... -..|+.-|+.-+.-|..+ ++||+ +...|..|++..
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K--~~~E~~L~~KF~~lLNeKK~KIR~-lq~~Ll~~~~~~ 205 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKAVSAK--EALETDLYKRFILVLNEKKTKIRS-LHNKLLNAAQER 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHh
Confidence 3444455555555555555555555444332 233444555555666444 66663 333344444443
No 90
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=74.64 E-value=3.8 Score=38.41 Aligned_cols=13 Identities=46% Similarity=0.521 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 020026 210 NEALKKEVERLKV 222 (332)
Q Consensus 210 ne~L~~EvqrLk~ 222 (332)
...|++|+++|+.
T Consensus 84 l~~LkeElerL~s 96 (251)
T 3m9b_A 84 LLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC
Confidence 4556678887775
No 91
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=74.64 E-value=75 Score=31.98 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=32.5
Q ss_pred ccCChHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 125 WTVDPKRAKSRILANRQSAA-RSKERK-------ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 125 a~~DpKR~K~RiLaNReSA~-RSReRK-------kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
..+|.|-+| .|.+..+ ..+.|+ ...+.+|..+...++.+..+|.++...+.++...+.
T Consensus 39 pmlD~~~ir----~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 39 PLLDMESLC----AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp CCCCHHHHH----HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHH----hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567776666 4666643 333333 234455566666666666666666666655555443
No 92
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.93 E-value=4.5 Score=27.39 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
.+..||.||..|-.++..|..+++.|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3578999999999999999888876643
No 93
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=73.67 E-value=18 Score=25.64 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
.+..||.+|..|+.||.+|..+.-.-..-..-|+.|-..|+.+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888765433222233344444444443
No 94
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=73.46 E-value=53 Score=32.05 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRD--------TTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~--------~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
..+.+|..+...++.+...|.++...+.++ ...|..+-++|+.+|..++.+ ...+.+++..+-..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEA-------LREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 334444444444444444444444444333 234445555555555544333 23344455444444
Q ss_pred hccCC
Q 020026 224 TGEMM 228 (332)
Q Consensus 224 tge~~ 228 (332)
++-++
T Consensus 101 ipN~~ 105 (421)
T 1ses_A 101 VPLPP 105 (421)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 44443
No 95
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.37 E-value=39 Score=28.12 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 020026 210 NEALKKEVERL 220 (332)
Q Consensus 210 ne~L~~EvqrL 220 (332)
++.|+.|++.|
T Consensus 70 ~e~Lr~e~~~l 80 (120)
T 3i00_A 70 CEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 96
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.80 E-value=18 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=16.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+..|+.+...|..+|.+|+.++..|+.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666555444
No 97
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.65 E-value=29 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
............+..++.........+..+...|+.+++.++.+
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444455555555555444
No 98
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.32 E-value=11 Score=37.04 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 162 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 222 (332)
Q Consensus 162 q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~ 222 (332)
..|+.|...|.+++..+++++..+..|+..++++|... +.+...|..+++.|+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-------NMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCC
Confidence 34555555555555555566666666666666555332 2233455566666654
No 99
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=72.31 E-value=19 Score=26.17 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQR 180 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 180 (332)
+++|..+|++|......|+..+..+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544443
No 100
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=71.38 E-value=18 Score=26.13 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
|.++..|..-|..|..+++.|+..|..++.|+..|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 45666666677777777777777776666665544
No 101
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=70.86 E-value=17 Score=36.59 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhccCC
Q 020026 213 LKKEVERLKVATGEMM 228 (332)
Q Consensus 213 L~~EvqrLk~atge~~ 228 (332)
+.+++..+-..++-++
T Consensus 130 ~~~~~~~~l~~iPN~~ 145 (484)
T 3lss_A 130 LEEERDKLMLNVGNIL 145 (484)
T ss_dssp HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhCCCCC
Confidence 3445544444444443
No 102
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=70.13 E-value=75 Score=31.38 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTD 184 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~ 184 (332)
+-+|..+...++.+...|.++...+.++...
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444433
No 103
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=69.96 E-value=6.6 Score=26.59 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
++.+....+.+...|..+|..|..++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34444455555555556666665555444
No 104
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=69.37 E-value=41 Score=26.72 Aligned_cols=42 Identities=10% Similarity=0.269 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
.+-+.+||.+-..+..++..+..+...|..+-...-.+-+.+
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~ 65 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEF 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333333333
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.14 E-value=5.7 Score=29.01 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=12.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
..|+.....|..+|..|+.++..|+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554443
No 106
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.10 E-value=47 Score=27.30 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTT 183 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~ 183 (332)
|.+|.+.++.|+.|...|..+...|+....
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555555555555444444444444433
No 107
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=68.71 E-value=33 Score=25.36 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
|...+.+||.++..++.-...+..++..+...
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~ 35 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLA 35 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45677888998888887777665555544433
No 108
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=68.62 E-value=24 Score=31.89 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 203 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~ 203 (332)
+.++.-..-|+.|+.||..|..++.... .|+..|+.+|++++.+.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~-------~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKA-------TEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Confidence 4455555667888888888888777554 44555555555555443
No 109
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.55 E-value=32 Score=27.17 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020026 183 TDLSTENTELKLRLQAM 199 (332)
Q Consensus 183 ~~L~sEN~eLK~RLqaL 199 (332)
..|+.+|+.|..++..+
T Consensus 26 R~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 110
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=68.41 E-value=72 Score=32.15 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTEN---TELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN---~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
..+.+|..+...++.+..+|.++...+.++...+.... .+|+.++..+. ..++ .+.+.+.+=-+.|...+-.+|
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~--~~i~-~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLS--NEKK-EIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 45566777777777777777777777766665554322 23333333332 1111 233333333344555556666
Q ss_pred CCC
Q 020026 229 TPT 231 (332)
Q Consensus 229 ~~~ 231 (332)
+-+
T Consensus 110 N~~ 112 (485)
T 3qne_A 110 NIV 112 (485)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 111
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.18 E-value=14 Score=28.86 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
.||..|+.+.+.|..+... |..+|..|+.+|+.|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~--------------L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDL--------------LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHh
Confidence 5666666666555444333 345555666565544
No 112
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=67.72 E-value=51 Score=30.75 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 209 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdal 209 (332)
-++-|+.+..-...|+.++-.+|+.|+ .-.+.+..||..+|+.+..-+..
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L~-------~mR~~vl~RLA~lEqdEl~LE~e 213 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENLR-------QKKEKLLGKIANIEQNQLLLEDN 213 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHH
Confidence 345566666666666666665555443 22344455666666665544433
No 113
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=67.54 E-value=44 Score=26.38 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVE 218 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~Evq 218 (332)
.-+..++.+...+..++..|..++..++.+...+...-..+...|...+....-.++-+.+|..-|+
T Consensus 30 ~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 30 ADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544444444444444444333333344444444433
No 114
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=67.34 E-value=8.9 Score=26.31 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020026 166 TEATTLSAQLTLFQRDTTDLSTENTELK 193 (332)
Q Consensus 166 ~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK 193 (332)
.||..|...++.-+.+...|..||.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4788888888888888888999998885
No 115
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=66.98 E-value=56 Score=27.41 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
.+|+.+++.|...|..|..++..+..++..|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555555333
No 116
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=66.83 E-value=8.2 Score=29.66 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=9.6
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 020026 178 FQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 178 Lqr~~~~L~sEN~eLK~RLq 197 (332)
|+.+...|..|+..|+.+++
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555544443
No 117
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=66.81 E-value=74 Score=32.60 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 020026 144 ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRD---ALNEALKKEVERL 220 (332)
Q Consensus 144 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrd---alne~L~~EvqrL 220 (332)
+..+++.++.-.-+|.+-+.++....+|.+++..=. ...+...++.|..+|+ ||...|++ ...+.|..||+.|
T Consensus 504 ~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~--~~~~~e~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR--VQLLKEQERTLALKLQ--EQEQLLKEGFQKESRIMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445566666666666666666554221 1233334445544443 22333433 3667788999999
Q ss_pred HHHh
Q 020026 221 KVAT 224 (332)
Q Consensus 221 k~at 224 (332)
+...
T Consensus 580 ~~~~ 583 (592)
T 1f5n_A 580 QTKM 583 (592)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 9873
No 118
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.35 E-value=11 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020026 182 TTDLSTENTELKLRLQAM 199 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLqaL 199 (332)
+..|..||.+|+.++..|
T Consensus 21 ~eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455554444433
No 119
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=66.24 E-value=26 Score=34.25 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020026 138 ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTE 188 (332)
Q Consensus 138 aNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sE 188 (332)
.|-+..+++-.++..-+ + -.++..|..+-..+..++..|+.+...+..+
T Consensus 9 ~~~~~~~~~~~~r~~~~-~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 9 QEPEVFHRAIREKGVAL-D-LEALLALDREVQELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp HCHHHHHHHHHHHTCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCc-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554444433222 2 3566666667777777776666666665544
No 120
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=66.19 E-value=8.4 Score=36.07 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql 175 (332)
+|+.++..|...|..|.+.+
T Consensus 58 eL~~ql~~L~arNe~L~~~L 77 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETL 77 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 121
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.95 E-value=75 Score=28.52 Aligned_cols=71 Identities=6% Similarity=0.063 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL-RD-ALNEALKKEVERLKV 222 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L-rd-alne~L~~EvqrLk~ 222 (332)
..+.+|+.++..+......+..++..++++...+..+-..++.++...+.+..- +. -..++|..||+.++.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888777777666544221 00 144556666655544
No 122
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.94 E-value=57 Score=27.12 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHH
Q 020026 139 NRQSAARSKERKARYISELERKVQTLQT---EATTLSAQLTLFQRDTTD 184 (332)
Q Consensus 139 NReSA~RSReRKkqyieeLE~kVq~Lq~---ENs~Ls~ql~~Lqr~~~~ 184 (332)
|=.+|...=..|+..|++|+.++..+.. .+.-|.+|+..+..++..
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456666667788888888888888777 556677777777666544
No 123
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.80 E-value=5.4 Score=28.52 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
.|++.||.++..|+..+..|...|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999988888777654
No 124
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=65.01 E-value=6.7 Score=30.82 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
..|+.+|..|..++..|+.||+.||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677788887755
No 125
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.33 E-value=12 Score=25.35 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 020026 209 LNEALKKEVERLKVATG 225 (332)
Q Consensus 209 lne~L~~EvqrLk~atg 225 (332)
.|+.|..||.|||...+
T Consensus 16 ~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 16 KNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 34555567777776654
No 126
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.25 E-value=58 Score=26.61 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
.-|.+|.+.|+.|+.|...|..+...|+.....+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3355566666666666666655555555554443
No 127
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=64.12 E-value=0.57 Score=37.95 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKAR 152 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkq 152 (332)
-+.+| |..+||.+|+++|.||..
T Consensus 65 IrdiR-RRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 65 VRDIR-RRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHH-HHHHHHHHTTSCCCCCCC
T ss_pred HHHHH-HHhhhHHHHHHHHHHHHH
Confidence 36788 999999999999999864
No 128
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.01 E-value=25 Score=34.22 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQ 197 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLq 197 (332)
..+.+|+.++..|+.++..+..++..++..+.....+.+.|-..++
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544444444444433333
No 129
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.91 E-value=61 Score=26.78 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=16.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
++.||+++..|..+|..|+.+|..||+.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666666666666555554
No 130
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=62.86 E-value=64 Score=29.11 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.|..|..++..|..++.....++..|+++...+...-..++.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 45666666666666666666666666666666655555554444
No 131
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=62.60 E-value=6 Score=31.09 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 190 TELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 190 ~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
..||.+|..|+. .|..|..|-..||..
T Consensus 18 evLKe~I~EL~e-------~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVE-------KNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 445555555532 233344455555553
No 132
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.54 E-value=48 Score=31.60 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEA--LKKEVERLKV 222 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~--L~~EvqrLk~ 222 (332)
.+...|++++..++.--.++++|-..-.+. +++=...|..+... ++.++++-.+++ |..+++.++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHT---VMALMASLDAEKAQ--GQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchh---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666554433 33333444443322 224555444333 4455555544
No 133
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.86 E-value=80 Score=27.44 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
.+..|+.++.....+...|..++..-+........++..+...|..|
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777666555555555555555555555444
No 134
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=61.85 E-value=22 Score=26.46 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE 191 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~e 191 (332)
|+++..|...|-.|..++..|+.+|.....|+..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieR 43 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIER 43 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666665555555555443
No 135
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.60 E-value=56 Score=25.53 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
-+-+|-.++..|+.|+..|+.++..++.+...|....+++
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777766666555555444444
No 136
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=61.50 E-value=4.4 Score=33.79 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
-+++|+.+++.|+.||..|+.+|.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999888875
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.26 E-value=35 Score=26.43 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
...|.+||.++.....++..|..++..+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446666666666666666555555433
No 138
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.25 E-value=34 Score=28.50 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 147 KERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 147 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+..-+.|+..|+.+|..|+.|...-+.... ....||..|+..++.+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q-------~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQ-------QAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 555567777777777777766665554433 3344555555544444
No 139
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=61.14 E-value=14 Score=24.99 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020026 209 LNEALKKEVERLKVATGE 226 (332)
Q Consensus 209 lne~L~~EvqrLk~atge 226 (332)
.+..|..||.|||...|+
T Consensus 16 ~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 16 XLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHhc
Confidence 345566677788776653
No 140
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=60.81 E-value=47 Score=25.28 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
|=+.-+..++.|+ .+|..|+..+..|..||..|+.++..|..
T Consensus 23 fReRK~~~i~~LE-------~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 23 FRKRKEDHLKALE-------TQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 44444445555667777777777666543
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.96 E-value=37 Score=26.13 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HhHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTL---FQR---DTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~---Lqr---~~~~L~sEN~eLK~RLqaL 199 (332)
+-++.|+.++..|+.+...|..+|+. +.. .+..|..+...+...|..+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999988853 222 2334444444444444333
No 142
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=59.89 E-value=39 Score=31.03 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 126 TVDPKRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 126 ~~DpKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
..+...+| +-|+.|..+-++ .+..|+.+++..+.|+..+.++++...+....+.
T Consensus 159 ~asde~Ik-~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 159 PGNDSVVK-QFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp ECCHHHHH-HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888 888888877664 4677889999999998888888877666544443
No 143
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=59.84 E-value=13 Score=25.04 Aligned_cols=17 Identities=47% Similarity=0.505 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 020026 209 LNEALKKEVERLKVATG 225 (332)
Q Consensus 209 lne~L~~EvqrLk~atg 225 (332)
.|..|..||.||+...+
T Consensus 15 ~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 15 KNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHhh
Confidence 44555667777777654
No 144
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.95 E-value=45 Score=27.45 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=7.0
Q ss_pred cCChHHHHHHHHHH
Q 020026 126 TVDPKRAKSRILAN 139 (332)
Q Consensus 126 ~~DpKR~K~RiLaN 139 (332)
.+++|-.| =|++|
T Consensus 6 EvEEKyrK-AMVsn 18 (103)
T 4h22_A 6 EVEEKYKK-AMVSN 18 (103)
T ss_dssp --CCTHHH-HHHHH
T ss_pred HHHHHHHH-HHHHH
Confidence 34566666 66665
No 145
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.79 E-value=74 Score=26.06 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 174 QLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 174 ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
.+..|......|...-..|..++...+....--.+....|..+|..|+..
T Consensus 70 ~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433222223333444555555543
No 146
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=58.63 E-value=76 Score=26.12 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 164 LQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 164 Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
|-.|.-.|...+..++.++..|.......-.++..|+.+
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~e 73 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELE 73 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 444444455555555555444444444444455555444
No 147
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.61 E-value=92 Score=27.07 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 158 ERKVQTLQTEATTLSAQL-TLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql-~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
|..+..++.|...|.+.| ....+-...-..+...++.|...|+.+..=++.+.+.|...+..||...-.+
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666666665543 1111111111223333455555565555556678889999999999865443
No 148
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.27 E-value=51 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=17.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+..|+.+...|..+|..|+..+..|..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777766555443
No 149
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.15 E-value=79 Score=26.14 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+..|+.++..|...+..|...|-.|+..++.|....+..-.=|+.+|..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 5667778888888888888888777777777777777766666666554
No 150
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=58.15 E-value=60 Score=26.74 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 162 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 162 q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
...+.++..|..++..|......|+.|..-+=.+|
T Consensus 14 ~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 14 TKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444443333
No 151
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.69 E-value=59 Score=26.41 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
..+..|+.++.....+...|..++..-+........++..+...|..|.
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888887777766666677777777766666553
No 152
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.37 E-value=50 Score=23.63 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 168 ATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 168 Ns~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
|..|+.+++.|.+++..|+...+.|.. ...-|+.||.||...+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlek--------------iianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEK--------------IIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHH--------------HHHHHHHHHHHHHHHH
Confidence 555666666666666555554444433 2234455666665543
No 153
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=57.24 E-value=1.6e+02 Score=29.57 Aligned_cols=10 Identities=0% Similarity=-0.336 Sum_probs=4.5
Q ss_pred HHHHHhccCC
Q 020026 219 RLKVATGEMM 228 (332)
Q Consensus 219 rLk~atge~~ 228 (332)
.|...+-.+|
T Consensus 133 ~~~~~l~~iP 142 (484)
T 3lss_A 133 ERDKLMLNVG 142 (484)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 3444444444
No 154
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=57.20 E-value=11 Score=27.37 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
.+++++...+..|..||..|..++..|+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666665544
No 155
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=57.10 E-value=15 Score=24.77 Aligned_cols=18 Identities=44% Similarity=0.484 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020026 209 LNEALKKEVERLKVATGE 226 (332)
Q Consensus 209 lne~L~~EvqrLk~atge 226 (332)
.+..|..||.||+...|+
T Consensus 16 ~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 16 ANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhcc
Confidence 345566678888877664
No 156
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=56.95 E-value=25 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 166 TEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 166 ~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
.||..|..+|..++.++..|..||..|+.=+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888999999886543
No 157
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.93 E-value=71 Score=25.28 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
+.|+.+++.|..+-..|..+|..|.++...|..+...++..+..+..+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 445555555555555555555555555555555555555555444443
No 158
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=56.70 E-value=19 Score=24.25 Aligned_cols=18 Identities=17% Similarity=0.173 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020026 209 LNEALKKEVERLKVATGE 226 (332)
Q Consensus 209 lne~L~~EvqrLk~atge 226 (332)
.+..|..||.|||...|+
T Consensus 15 ~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 15 KXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHcc
Confidence 345566677777776653
No 159
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.55 E-value=53 Score=25.53 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVA 223 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~a 223 (332)
..|+.+|..+..++..|..|...++.-+..+...-.---.+...+..++..||..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677666666666666666665555444333111112334444555566543
No 160
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=56.24 E-value=26 Score=27.88 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 166 TEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 166 ~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
.||..|..+|..++.++..|..+|.+|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777754
No 161
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.95 E-value=44 Score=25.75 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+||.++..|+...+-+...|..|.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn 34 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELS 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555555555554443
No 162
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.62 E-value=2e+02 Score=35.48 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQT 163 (332)
Q Consensus 149 RKkqyieeLE~kVq~ 163 (332)
+||+-+++.|.+++.
T Consensus 1973 ~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1973 IKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 163
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=55.29 E-value=16 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020026 209 LNEALKKEVERLKVATGE 226 (332)
Q Consensus 209 lne~L~~EvqrLk~atge 226 (332)
.+..|..||.|||...|+
T Consensus 16 ~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 16 KGHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 455666788888876653
No 164
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.24 E-value=1e+02 Score=31.80 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhc
Q 020026 211 EALKKEVERLKVATG 225 (332)
Q Consensus 211 e~L~~EvqrLk~atg 225 (332)
+.+..+|+||.+++.
T Consensus 141 edq~~kIQRLEvDId 155 (562)
T 3ghg_A 141 RAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334467777777764
No 165
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=55.10 E-value=21 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020026 209 LNEALKKEVERLKVATGE 226 (332)
Q Consensus 209 lne~L~~EvqrLk~atge 226 (332)
.+..|..||.||+...|+
T Consensus 15 ~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 15 KIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHhcC
Confidence 445666788888877664
No 166
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=55.04 E-value=15 Score=35.86 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 020026 160 KVQTLQTEATTLSAQLTLFQR---DTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr---~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~~ 228 (332)
+++.|+.+.+.++.++..+.+ +...|..+-++|+.+|..++.+ ...+.+++..+-..++-++
T Consensus 45 ~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 45 RLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEE-------LRKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCC
Confidence 344444444444444433211 1234455666666666655433 2344455555555555544
No 167
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=54.64 E-value=6.7 Score=28.34 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLS 172 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls 172 (332)
..|+++||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999998887666554
No 168
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=54.22 E-value=7.2 Score=35.70 Aligned_cols=41 Identities=34% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020026 183 TDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEM 227 (332)
Q Consensus 183 ~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atge~ 227 (332)
..|..||.+||.++..|+.+.. ..+.|+.|-++||...+..
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDIT 62 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCc
Confidence 3455666666666655554433 3467777888999887754
No 169
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.96 E-value=76 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
....|.+|..|+.++.+|..++.
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 170
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.81 E-value=48 Score=25.79 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 142 SAARSKERKARYISELERKVQTLQ 165 (332)
Q Consensus 142 SA~RSReRKkqyieeLE~kVq~Lq 165 (332)
.....+..+..-+.+++.-...|.
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555554444443
No 171
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.65 E-value=81 Score=24.94 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 139 NRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 139 NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
|=+||..+-.|-|+-|.+ ++......|-.+..+|...+..+..|..|-..|+.
T Consensus 14 eLQSALeaEIqAKQ~i~E---ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSR---EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766665443 22333344444444444444444444444333333
No 172
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=53.52 E-value=23 Score=30.22 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 020026 203 AQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 203 ~~Lrdalne~L~~EvqrLk~at 224 (332)
++|+.|.+..+.+-=..||...
T Consensus 86 AqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 86 AQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444444443334455544
No 173
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=52.99 E-value=1.1e+02 Score=26.10 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 130 KRAKSRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 130 KR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
-|.+ +.|-||.-+-.-| |+.||.+++........-..+.....+....+..+......|+...
T Consensus 37 eR~~-k~lE~r~~~deEr------~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a 99 (147)
T 2b9c_A 37 ERGM-KVIESRAQKDEEK------MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 99 (147)
T ss_dssp THHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhhhcccHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 7888888876654 4455555554444444433333333343333444333333344333
No 174
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.90 E-value=85 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 166 TEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 166 ~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
.||..|..++..++.+...|..||.+|+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888888888888888888854
No 175
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=52.85 E-value=22 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=7.0
Q ss_pred HHhHHHHHHHHHHHHHH
Q 020026 180 RDTTDLSTENTELKLRL 196 (332)
Q Consensus 180 r~~~~L~sEN~eLK~RL 196 (332)
.+...|..+|..|+.++
T Consensus 37 ~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 37 DKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 176
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.61 E-value=1.4e+02 Score=29.54 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHh
Q 020026 211 EALKKEVERLKVAT 224 (332)
Q Consensus 211 e~L~~EvqrLk~at 224 (332)
+.+..+|+||.+++
T Consensus 144 ~~q~~kiqRLE~~I 157 (390)
T 1deq_A 144 RDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 34446777777766
No 177
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=52.27 E-value=74 Score=24.09 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 146 SKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 146 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
-...-....+.++.+++.....+..+...|..|++.+..|..+-..+..+|...
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556677777777777777777777777777777776666666655443
No 178
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=51.74 E-value=22 Score=25.62 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
+..|+.....|..||..|+.++..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666665553
No 179
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.44 E-value=45 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 195 RLQAMEQQAQLRDALNEALKKEVERLKV 222 (332)
Q Consensus 195 RLqaLEqq~~Lrdalne~L~~EvqrLk~ 222 (332)
+|..++.+..-++.+...|+.|+..++.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444455555555555543
No 180
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=50.99 E-value=30 Score=27.84 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020026 186 STENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 186 ~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atg 225 (332)
..|-..++..+-.||.+.. ...+...+||.+||..+-
T Consensus 49 i~Emq~Ir~tvyeLE~~h~---kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 49 LAEMQQIRNTVYERELTHR---KMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3444455555555655532 233666788888887664
No 181
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=50.31 E-value=1.1e+02 Score=25.55 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHHH
Q 020026 182 TTDLSTENTELKLRL 196 (332)
Q Consensus 182 ~~~L~sEN~eLK~RL 196 (332)
+..|...|..|+.++
T Consensus 59 ~~~Le~~n~~L~~~l 73 (155)
T 2oto_A 59 KQALEDQRKDLETKL 73 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344333333
No 182
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=50.16 E-value=89 Score=24.37 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 168 ATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 168 Ns~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
...|..++..|+.+...|...+.++.-.|+.|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555555555555555555444444444
No 183
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=50.00 E-value=75 Score=28.90 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~ 204 (332)
.=++=.|+++..|+.+|..|+.+++.|.. ...+|..+-.++..+..+..
T Consensus 65 ~aVSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 65 DAVSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 34667788888888888888888877643 56788888888877766644
No 184
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=49.38 E-value=51 Score=32.17 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRDTT 183 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~ 183 (332)
.+-+|..+...++.+..+|.++...+.++..
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544444443
No 185
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=49.10 E-value=30 Score=27.21 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 162 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 162 q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..|..-...|-++|..|..+...|..|+..+++-...+
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554433333
No 186
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=49.02 E-value=1.6e+02 Score=27.08 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERKARYISELERKVQTLQTEAT-TLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLRDALNEALKKEV 217 (332)
Q Consensus 140 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs-~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lrdalne~L~~Ev 217 (332)
...|...+.|=..++++|..++.-+-.+.. .|...+..++. .|..-+..+.++++++... .-..+.++.+|...+
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~---~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~ 240 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQM 240 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 455666666667777777777655432221 12223334433 3444457777888888665 334566889999999
Q ss_pred HHHHHHhcc
Q 020026 218 ERLKVATGE 226 (332)
Q Consensus 218 qrLk~atge 226 (332)
+.|+..+|.
T Consensus 241 e~l~~~l~~ 249 (273)
T 3s84_A 241 EQLRQKLGP 249 (273)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhCc
Confidence 999998865
No 187
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=48.12 E-value=23 Score=24.17 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhc
Q 020026 211 EALKKEVERLKVATG 225 (332)
Q Consensus 211 e~L~~EvqrLk~atg 225 (332)
..|..||.|||...|
T Consensus 18 ~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 18 WHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455556655544
No 188
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.53 E-value=60 Score=31.74 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+++.|+.++.++.+++..+..++.....+.+.|-..+
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444443333
No 189
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=47.47 E-value=29 Score=23.47 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020026 209 LNEALKKEVERLKVATGE 226 (332)
Q Consensus 209 lne~L~~EvqrLk~atge 226 (332)
.|..|..||.|||...++
T Consensus 16 ~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 16 KLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHcc
Confidence 345556677777776553
No 190
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=47.36 E-value=24 Score=27.08 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 020026 182 TTDLSTENTELKLRLQ 197 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLq 197 (332)
...|..+|..|+.+|+
T Consensus 63 ~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 63 IDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455555555543
No 191
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=47.25 E-value=1.2e+02 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 020026 166 TEATTLSAQLTLFQRDTTDLSTENTELKL 194 (332)
Q Consensus 166 ~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~ 194 (332)
.||..|..+|..++.++..|..||.+|+.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888888888855
No 192
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.68 E-value=46 Score=32.98 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
+=-+|.++||+++..|+..+..--..|..|+..+..+..+-+.|...|
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335788888888888887766655577777777666666666555544
No 193
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=46.32 E-value=68 Score=29.24 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 162 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 162 q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
++|+++-...-.+-..|+.....+.+|+..|+.++..++..
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 44444444444455556666677889999999999888765
No 194
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=46.32 E-value=74 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTE 167 (332)
Q Consensus 152 qyieeLE~kVq~Lq~E 167 (332)
.++.+++.++..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~ 27 (60)
T 3htk_A 12 NQVEELTEKCSLKTDE 27 (60)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334443344333333
No 195
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=45.86 E-value=1.8e+02 Score=26.83 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=32.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020026 136 ILANRQSA-ARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAME 200 (332)
Q Consensus 136 iLaNReSA-~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLE 200 (332)
-++|||.. +.+|.||..-..++.+ |..... -+.+|..|+++....++++-....+|..+.
T Consensus 98 ~IR~~E~svqp~R~~R~~l~~~I~k----Lk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 98 SIRNIEASVQPSRDRKEKITDEIAH----LKYKDP-QSTKIPVLEQELVRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCT-TCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH----HhccCC-CCchHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 56788765 5666666665555532 221111 134556666666666666655555555443
No 196
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=45.46 E-value=79 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQRDTTDLST 187 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s 187 (332)
.++.+|..+..+|..+|..|+.+...|..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666766666777666666555444443
No 197
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=45.31 E-value=1.5e+02 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 139 NRQSAARSKERKARYISELERKVQTLQTEA 168 (332)
Q Consensus 139 NReSA~RSReRKkqyieeLE~kVq~Lq~EN 168 (332)
.|.++.+--..=.+...-|+..++.|..|.
T Consensus 66 Dk~~~e~l~~~veeA~~~L~eYn~rL~~E~ 95 (152)
T 4fla_A 66 DKEAAERLSKTVDEACLLLAEYNGRLAAEL 95 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333222333334444444444333
No 198
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=45.28 E-value=21 Score=23.29 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 020026 183 TDLSTENTELKLRLQA 198 (332)
Q Consensus 183 ~~L~sEN~eLK~RLqa 198 (332)
..|++||++||.+++.
T Consensus 9 asleaenkqlkakvee 24 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666665543
No 199
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=45.11 E-value=11 Score=34.56 Aligned_cols=8 Identities=50% Similarity=0.767 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 020026 185 LSTENTEL 192 (332)
Q Consensus 185 L~sEN~eL 192 (332)
|..||..|
T Consensus 48 l~~En~rL 55 (255)
T 2j5u_A 48 LKKENKDL 55 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 200
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.11 E-value=84 Score=22.63 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql 175 (332)
+|..++..|...|..|...+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L 32 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETL 32 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 201
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.97 E-value=67 Score=24.93 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 020026 208 ALNEALKKEVERLK 221 (332)
Q Consensus 208 alne~L~~EvqrLk 221 (332)
..+..|+.+++.|+
T Consensus 73 ~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 73 KRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 45566666666554
No 202
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.82 E-value=19 Score=27.28 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEAT 169 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs 169 (332)
.||..|+.+++.|+.++.
T Consensus 57 ~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 203
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=44.50 E-value=76 Score=30.38 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLS 172 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls 172 (332)
||..|...+.++..|.
T Consensus 17 ~e~~i~~~~~~i~~L~ 32 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELS 32 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHH
Confidence 3333333333333333
No 204
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.25 E-value=1.3e+02 Score=24.66 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 020026 211 EALKKEVERLKV 222 (332)
Q Consensus 211 e~L~~EvqrLk~ 222 (332)
..|+.++.-|+.
T Consensus 68 ~~L~~~~~~lk~ 79 (103)
T 4h22_A 68 SILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 205
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.15 E-value=55 Score=24.66 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 183 TDLSTENTELKLRLQ 197 (332)
Q Consensus 183 ~~L~sEN~eLK~RLq 197 (332)
..|..+|..|+.+|+
T Consensus 64 ~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 64 DDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 206
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.67 E-value=20 Score=25.92 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=16.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
..+..++..|..||.+|+.++..++.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677778888888888776654
No 207
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.40 E-value=1.3e+02 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSA 173 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ 173 (332)
.|..+..+..|...|++
T Consensus 45 aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 208
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.94 E-value=1.2e+02 Score=23.97 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 020026 140 RQSAARSK 147 (332)
Q Consensus 140 ReSA~RSR 147 (332)
|++|+...
T Consensus 25 rEaA~Ee~ 32 (84)
T 1gmj_A 25 REQAEEER 32 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHhHHH
Confidence 44444443
No 209
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.87 E-value=62 Score=24.79 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020026 153 YISELER 159 (332)
Q Consensus 153 yieeLE~ 159 (332)
-+.+++.
T Consensus 30 ~~~e~~~ 36 (107)
T 1fxk_A 30 QINETQK 36 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 210
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=42.23 E-value=22 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=8.4
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 020026 180 RDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 180 r~~~~L~sEN~eLK~RLqaL 199 (332)
..+..|+.+|+.||..|.-+
T Consensus 43 atnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 43 ATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 211
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=42.15 E-value=34 Score=22.55 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 176 TLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 176 ~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
+.|+++.....+||-+|.+.+..||.
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555566777777666655553
No 212
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.95 E-value=36 Score=32.06 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 160 KVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 160 kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+++.|+.++..|.++++.|+
T Consensus 186 eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 213
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.61 E-value=2.4e+02 Score=28.37 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
+|+..|..+++..+.+...+...|
T Consensus 121 ~~i~~Iq~slk~~Q~Qi~en~n~~ 144 (464)
T 1m1j_B 121 QYVNMIDNKLVKTQKQRKDNDIIL 144 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccchhhHH
Confidence 444445455444444444444333
No 214
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.25 E-value=92 Score=25.01 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql 175 (332)
|+..++.|+.....+..++
T Consensus 100 l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 100 LESTLQKMGENLRAITDIM 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 215
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=40.73 E-value=1.5e+02 Score=24.21 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 020026 143 AARSKERKARYISE 156 (332)
Q Consensus 143 A~RSReRKkqyiee 156 (332)
.+.-++.|+.||.+
T Consensus 19 ~q~e~EeKkkiLaE 32 (107)
T 1ytz_T 19 KQTARETKKKVLAE 32 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445567777775
No 216
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.45 E-value=62 Score=30.98 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020026 164 LQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 164 Lq~ENs~Ls~ql~~Lqr~ 181 (332)
|+..+.....++..|+..
T Consensus 17 ~e~~i~~~~~~i~~L~~~ 34 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEM 34 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHH
Confidence 333333333333333333
No 217
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.18 E-value=94 Score=21.80 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 196 (332)
..|+..+..+..+...+...+..+...+..+...-+.....|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444444444444444444433333333
No 218
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.21 E-value=1e+02 Score=25.21 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
.+|..++..++.....|...+...
T Consensus 47 ~~LR~kl~~~~~~t~~l~k~ts~~ 70 (130)
T 2dnx_A 47 SKLQENLQQLQHSTNQLAKETNEL 70 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 219
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=39.12 E-value=30 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
.|-.-+..|+.||.+|.+++..|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777655
No 220
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=38.83 E-value=2.2e+02 Score=25.55 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ--AQLRDALNEA 212 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq--~~Lrdalne~ 212 (332)
++++-+-..+..|+.+|..|..++..+++....|..+..++..--..+|.+ .+..-.||+.
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeK 187 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEK 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444555555555555555555555555544444443333333433 2333345554
No 221
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=38.53 E-value=17 Score=30.32 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 175 LTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 175 l~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
+..|..+...|..||+.||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667788999999999973
No 222
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=37.91 E-value=51 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 020026 209 LNEALKKEVERLKVATGE 226 (332)
Q Consensus 209 lne~L~~EvqrLk~atge 226 (332)
.+..|..||.||+...|+
T Consensus 16 ~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 16 KLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHhcC
Confidence 344555677777776664
No 223
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=37.82 E-value=71 Score=24.74 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQL 205 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~L 205 (332)
++-|+.+..-...|+.++..+++-|+. -.+.+-.||..+|+.+..
T Consensus 9 Leml~IrKnma~sEI~EID~Ki~nL~~-------mR~ivldRlA~lEqdE~~ 53 (72)
T 2xu6_A 9 LEFLNIQKNSTMSEIRDIEVEVENLRQ-------KKEKLLGKIANIEQNQLM 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHH
Confidence 344555555555566666555555432 122233456666665443
No 224
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.78 E-value=91 Score=25.74 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 020026 171 LSAQLTLFQRD 181 (332)
Q Consensus 171 Ls~ql~~Lqr~ 181 (332)
|..++..|+.+
T Consensus 30 l~~~v~~l~~e 40 (171)
T 2zvf_A 30 LPKTVERFFEE 40 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344433333
No 225
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.59 E-value=50 Score=25.17 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
.|...|.+||..+..-..++..|+.++..++
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888877776554
No 226
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.08 E-value=44 Score=22.07 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
.||..+..|++-...|.+++..|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666655555555444
No 227
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.93 E-value=1.5e+02 Score=23.34 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 020026 211 EALKKEVERLK 221 (332)
Q Consensus 211 e~L~~EvqrLk 221 (332)
+.|++++..|+
T Consensus 62 ~~l~~~~eelq 72 (81)
T 1wt6_A 62 RQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 228
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.86 E-value=43 Score=28.64 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=1.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020026 207 DALNEALKKEVERLKV 222 (332)
Q Consensus 207 dalne~L~~EvqrLk~ 222 (332)
+.+.+.+...+..||.
T Consensus 116 e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 116 DMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHCC------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555554
No 229
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=36.08 E-value=2.7e+02 Score=25.91 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ 201 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq 201 (332)
..-|.++..|++.|+..-..+..+|+.|+++=..|..+...++.|+..++.
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999877754
No 230
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.29 E-value=11 Score=32.84 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=15.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020026 178 FQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVAT 224 (332)
Q Consensus 178 Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~at 224 (332)
+..++..+..+...|...++.++.+.+|.++....|+.+++..|.+-
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAK 131 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAK 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555566666666666665555555555544443
No 231
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.15 E-value=64 Score=31.61 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 162 QTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKV 222 (332)
Q Consensus 162 q~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~ 222 (332)
..|...+.+|..++..|++++.-|..|+..|+.++..+..+ ...+++|+.+|+.
T Consensus 38 ~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 38 SALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQS 91 (428)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcC
Confidence 34445555566666666666666666666666554443222 2345567766654
No 232
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.75 E-value=1.4e+02 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTL 177 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~ 177 (332)
.|+.+++.|+.+...|..++..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 233
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.20 E-value=72 Score=32.36 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTE 191 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~e 191 (332)
..+|+.++.+++.+.......|...++....|..+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~ 374 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQ 374 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46777777777777766666555444444444433333
No 234
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.12 E-value=57 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
..||.-|..|+..|..|...++-|+++...|
T Consensus 20 aklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665554444
No 235
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.05 E-value=1.9e+02 Score=23.55 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTEL 192 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eL 192 (332)
+.|.++..|......|..+|..++.+.......|..|
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444
No 236
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=33.75 E-value=1.6e+02 Score=22.67 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLR 195 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~R 195 (332)
..+..++.+++.|.............|...+..|..+.+.|..+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444455555555555555555555444
No 237
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=33.73 E-value=58 Score=22.15 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=9.8
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 020026 178 FQRDTTDLSTENTELKLRL 196 (332)
Q Consensus 178 Lqr~~~~L~sEN~eLK~RL 196 (332)
+......|+.+|+.|..++
T Consensus 18 yidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445556666665444
No 238
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=33.55 E-value=1.2e+02 Score=21.88 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDL 185 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L 185 (332)
+..++..|+.+...++..++...+++..|
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~L 33 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDL 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333
No 239
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=33.44 E-value=1.9e+02 Score=25.15 Aligned_cols=58 Identities=19% Similarity=0.398 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVE 218 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~Evq 218 (332)
+-+||.-++.-.+....|...|..|.++ |..|.-.++.-+..+ +.|+ ..|+.+++-++
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKE---LEdEklK~~E~MdSF---E~Lk-vENE~vkerl~ 157 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKE---LENEKLKAAENMDSF---EKLS-MENENLKEKIA 157 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHh-hhhHhHHHHHH
Confidence 3466666666666666677777766553 232322222223333 3333 45666665443
No 240
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.42 E-value=2.4e+02 Score=24.40 Aligned_cols=15 Identities=47% Similarity=0.501 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 208 ALNEALKKEVERLKV 222 (332)
Q Consensus 208 alne~L~~EvqrLk~ 222 (332)
+.+-.|..||.||+.
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 140 SKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHhhc
Confidence 455567778888763
No 241
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=33.16 E-value=2.3e+02 Score=25.47 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 129 PKRAKSRILANRQSAARSKERKARYISELERKVQT 163 (332)
Q Consensus 129 pKR~K~RiLaNReSA~RSReRKkqyieeLE~kVq~ 163 (332)
..++- +-...|+.|.++-.++++.++.|-.++..
T Consensus 102 W~~Le-~ae~eRe~aL~~el~RlerLe~La~kf~r 135 (235)
T 2odv_A 102 WGKLH-VAILEREKQLRSEFERLEALQRIVTKLQM 135 (235)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566 67788999999998888777777655553
No 242
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.84 E-value=1.5e+02 Score=21.83 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 020026 187 TENTELKLRLQAM 199 (332)
Q Consensus 187 sEN~eLK~RLqaL 199 (332)
.|..+|+..++.|
T Consensus 56 ~Ei~elrr~iq~L 68 (77)
T 3trt_A 56 QESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 243
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=32.03 E-value=2.5e+02 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
...++...+..+..+ |..|+..|..+
T Consensus 184 ae~el~~ak~~ye~l---n~~L~~eLp~l 209 (251)
T 2fic_A 184 AEEELIKAQKVFEEM---NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 444444444444433 56666666555
No 244
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=32.00 E-value=1.7e+02 Score=22.45 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020026 157 LERKVQTLQTEATTLSAQLTLFQRDTTDLST 187 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~s 187 (332)
|...|..|..|...|..++...+.++..+..
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~e 32 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKD 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888888877777666553
No 245
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=31.95 E-value=2.1e+02 Score=26.15 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 020026 169 TTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQ-AQLR 206 (332)
Q Consensus 169 s~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq-~~Lr 206 (332)
+.+++++..|+.....+..|++.+..+|....++ +.+|
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555666666666555555 3444
No 246
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=31.44 E-value=1.5e+02 Score=21.69 Aligned_cols=7 Identities=43% Similarity=0.562 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 020026 214 KKEVERL 220 (332)
Q Consensus 214 ~~EvqrL 220 (332)
..|++.|
T Consensus 69 ~~el~sl 75 (77)
T 3trt_A 69 TMEVDAL 75 (77)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3333333
No 247
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=31.36 E-value=1.8e+02 Score=22.37 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
+|...|..|..|...|..++...+.++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888899998889888888877766655
No 248
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=30.75 E-value=2.3e+02 Score=26.85 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atg 225 (332)
+.+|+.|...++..+.+...+...|..++.. |......|+.....+.....-..+..+.|++||+.++...-
T Consensus 122 ~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~---l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 122 KEGITDLRGEIQQNQKYAQQLIEELTKLRDS---IGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 4555566666666555555555555555432 33333334444443333332233345677788887777654
No 249
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.74 E-value=59 Score=27.80 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
+..|...+.....+...|..++..-+........++..+...|..|
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666666655444334444444555555544444
No 250
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=29.56 E-value=84 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
+++.-|=.+++.|+.+|..|..+...|+++
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555555555444444333
No 251
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.55 E-value=2.1e+02 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020026 206 RDALNEALKKEVERLKVAT 224 (332)
Q Consensus 206 rdalne~L~~EvqrLk~at 224 (332)
|......++.+|..++...
T Consensus 110 Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 110 RKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456677778888887654
No 252
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=29.27 E-value=24 Score=29.80 Aligned_cols=18 Identities=44% Similarity=0.652 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCcccccc
Q 020026 9 PNPNPPTRGPYHRRSQSE 26 (332)
Q Consensus 9 ~~~~~~~r~~~hrra~se 26 (332)
|.+++|+-+..|||++|-
T Consensus 7 p~~~~~p~~~~hRRS~Sa 24 (120)
T 3vhx_B 7 PDQNAPPIRLRHRRSRSA 24 (120)
T ss_dssp -CCCCCCSSCCSCCCCSS
T ss_pred CCCCCCCcCcceecccCC
Confidence 445567778899999986
No 253
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.18 E-value=1.5e+02 Score=26.15 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=9.1
Q ss_pred hcccCChHHHHHHHHHHHH
Q 020026 123 ELWTVDPKRAKSRILANRQ 141 (332)
Q Consensus 123 Ela~~DpKR~K~RiLaNRe 141 (332)
+++..|-++.++.+.++.-
T Consensus 23 ~l~~~~~~~~~e~l~~~q~ 41 (174)
T 2p22_A 23 ELYREDVDYVADKILTRQT 41 (174)
T ss_dssp HHHHHHHHHHHHHTGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455566644444433
No 254
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=29.18 E-value=1.4e+02 Score=21.25 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql 175 (332)
.-|+.|+.|+.++..|..++
T Consensus 9 fAERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 255
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.82 E-value=2.4e+02 Score=23.10 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 020026 130 KRAKSRILA 138 (332)
Q Consensus 130 KR~K~RiLa 138 (332)
+.+| +++.
T Consensus 63 ~eIk-~~l~ 70 (142)
T 3gp4_A 63 EALI-DYLA 70 (142)
T ss_dssp HHHH-HHHH
T ss_pred HHHH-HHHH
Confidence 3444 4443
No 256
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.81 E-value=2.3e+02 Score=22.87 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 020026 188 ENTELKLRLQAME 200 (332)
Q Consensus 188 EN~eLK~RLqaLE 200 (332)
....|+.++...+
T Consensus 41 ~i~vLk~Qv~IY~ 53 (94)
T 3jsv_C 41 TVPVLKAQADIYK 53 (94)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 257
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=28.65 E-value=34 Score=26.95 Aligned_cols=55 Identities=33% Similarity=0.416 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQ---QAQLRDALNEAL 213 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEq---q~~Lrdalne~L 213 (332)
+.+.+|..+|+.|+.|..+. ..+|+++-.|.. .|..+|+.+.+ ..++|..+++.-
T Consensus 12 ~~~~e~k~kv~~LQ~eLdts----E~VQrDFVkLSQ---sLQvqLE~IRqadt~~qvr~Il~e~~ 69 (79)
T 1tu3_F 12 QLMFEEKNKAQRLQTELDVS----EQVQRDFVKLSQ---TLQVQLERIRQADSLERIRAILNDTK 69 (79)
T ss_dssp ---------CHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHTCCSHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHccCc
Confidence 45556666666666665543 345666666664 44444544443 355555555443
No 258
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.43 E-value=87 Score=30.68 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
..+|..+++.|+.+...|..+...+
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l 68 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYI 68 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444443333
No 259
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=28.39 E-value=3e+02 Score=25.39 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 135 RILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 135 RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
+.+.++......|.=--..+..||.++...+.++..-+++|..+.|+
T Consensus 114 ~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 114 EKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 56666654333222112346777787777777777777777777664
No 260
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.14 E-value=1.6e+02 Score=25.73 Aligned_cols=10 Identities=10% Similarity=-0.110 Sum_probs=4.8
Q ss_pred cccCChHHHH
Q 020026 124 LWTVDPKRAK 133 (332)
Q Consensus 124 la~~DpKR~K 133 (332)
+.++|+.+.+
T Consensus 66 LnLT~EQq~q 75 (175)
T 3lay_A 66 SPLTTEQQAT 75 (175)
T ss_dssp --CCHHHHHH
T ss_pred ccCCHHHHHH
Confidence 4456666555
No 261
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.93 E-value=4.4e+02 Score=26.81 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 134 SRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 134 ~RiLaNReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
+.+-.+-..|..--.+=-+|.++||+++..|+..+..--..|..|+.....+..+-+.|..-|.+
T Consensus 93 ~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 93 NILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 262
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.83 E-value=1.1e+02 Score=19.81 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLS 172 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls 172 (332)
.||.++..|+.....|.
T Consensus 5 alekkcaalesklqale 21 (31)
T 3ljm_A 5 ALEKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444443333333
No 263
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.77 E-value=3e+02 Score=23.86 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTD 184 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~ 184 (332)
++.|..+-..-+.|...|++++..+|+.+..
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K 78 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNLEK 78 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhHHH
Confidence 4445555555566677777777777766443
No 264
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.55 E-value=1.7e+02 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
-.||+.-+.|+.-+..|+.+++.|+.+
T Consensus 20 lqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 20 LQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666655443
No 265
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.78 E-value=21 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.++.|.+|++.|+.++..+..++..+++.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777666543
No 266
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=26.78 E-value=3.1e+02 Score=23.72 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 020026 207 DALNEALKKEVERLKVATGEMM 228 (332)
Q Consensus 207 dalne~L~~EvqrLk~atge~~ 228 (332)
+...+.+..||.++-...+...
T Consensus 164 ~~~~~~~e~~~~~~~~~~~~~~ 185 (202)
T 2p4w_A 164 RRLAEENRQIIEEIFRDIEKIL 185 (202)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHhcccC
Confidence 3445666678888777776553
No 267
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.13 E-value=1.2e+02 Score=26.47 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 020026 90 RHRYSNSIDG 99 (332)
Q Consensus 90 ~h~~s~s~d~ 99 (332)
.|.||.-+|=
T Consensus 4 ~~~~~~~~~~ 13 (175)
T 3lay_A 4 HHHHSSGVDL 13 (175)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3556666664
No 268
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.80 E-value=1.5e+02 Score=21.92 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTLS 172 (332)
Q Consensus 157 LE~kVq~Lq~ENs~Ls 172 (332)
|..+|+.|+.|+..|.
T Consensus 15 LkDqV~eL~qe~k~m~ 30 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMK 30 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 269
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=25.69 E-value=2.3e+02 Score=21.76 Aligned_cols=8 Identities=13% Similarity=0.464 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 020026 209 LNEALKKE 216 (332)
Q Consensus 209 lne~L~~E 216 (332)
+...|..|
T Consensus 44 lek~L~~E 51 (71)
T 1s1c_X 44 FEKNINTE 51 (71)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334333
No 270
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.59 E-value=2.6e+02 Score=22.31 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLS 186 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~ 186 (332)
+.|+++++.|+.....|...+..++.+...+.
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666655555555555554444443333
No 271
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.46 E-value=1.2e+02 Score=19.93 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 020026 182 TTDLSTENTELKLRLQAME 200 (332)
Q Consensus 182 ~~~L~sEN~eLK~RLqaLE 200 (332)
...|.+.|-..|+++|+|.
T Consensus 10 vqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 10 VQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3344444555555555543
No 272
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=24.95 E-value=3.8e+02 Score=24.12 Aligned_cols=13 Identities=15% Similarity=-0.033 Sum_probs=6.6
Q ss_pred hhhcccCChHHHH
Q 020026 121 LAELWTVDPKRAK 133 (332)
Q Consensus 121 LaEla~~DpKR~K 133 (332)
..-|+.+|....+
T Consensus 57 Gq~L~~ld~~~~~ 69 (369)
T 4dk0_A 57 GDLLAEIDSTTQI 69 (369)
T ss_dssp SCCCEECCCHHHH
T ss_pred CCEEEEEcCHHHH
Confidence 3445555655444
No 273
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.89 E-value=1.8e+02 Score=20.31 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQ 165 (332)
Q Consensus 152 qyieeLE~kVq~Lq 165 (332)
.||.+||.+...|.
T Consensus 10 nyiqeleernaelk 23 (46)
T 3he4_B 10 NYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 67777776655443
No 274
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=24.79 E-value=1e+02 Score=25.44 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+|..+|+.|..++..|..++..|+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 275
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.78 E-value=1.2e+02 Score=25.14 Aligned_cols=6 Identities=17% Similarity=-0.047 Sum_probs=2.7
Q ss_pred ChHHHH
Q 020026 128 DPKRAK 133 (332)
Q Consensus 128 DpKR~K 133 (332)
+...++
T Consensus 95 ~~~eA~ 100 (151)
T 2zdi_C 95 SIDEAI 100 (151)
T ss_dssp EHHHHH
T ss_pred cHHHHH
Confidence 344444
No 276
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.69 E-value=1.6e+02 Score=20.72 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020026 156 ELERKVQTLQTEATTLSAQLTLFQRDTTD 184 (332)
Q Consensus 156 eLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~ 184 (332)
+|-.++.....|+..-+.+++.||.....
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544333
No 277
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=24.56 E-value=3e+02 Score=23.07 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020026 159 RKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 159 ~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
.+...++.-.-.|+.|++.|+
T Consensus 26 ~~~~k~E~~Ll~Ls~Qi~~LE 46 (119)
T 2jmh_A 26 HAIEKGEHQLLYLQHQLDELN 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444443
No 278
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=24.54 E-value=41 Score=24.44 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020026 150 KARYISELERKVQTLQTEATTL 171 (332)
Q Consensus 150 KkqyieeLE~kVq~Lq~ENs~L 171 (332)
+..|++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999887665544
No 279
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.28 E-value=1.6e+02 Score=26.20 Aligned_cols=33 Identities=24% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 149 RKARYISELERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 149 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.-...+.+|..++.+|+.+|..|..+.+..+.+
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999888776554
No 280
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.05 E-value=31 Score=31.61 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 185 LSTENTELKLRLQAM 199 (332)
Q Consensus 185 L~sEN~eLK~RLqaL 199 (332)
+..||++++.+|+.|
T Consensus 160 l~~En~~le~~Ie~L 174 (250)
T 2ve7_C 160 LNAAHQEALMKLERL 174 (250)
T ss_dssp HHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 281
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.72 E-value=1.3e+02 Score=19.18 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 020026 167 EATTLSAQLT 176 (332)
Q Consensus 167 ENs~Ls~ql~ 176 (332)
||..|..+++
T Consensus 8 endaleqkia 17 (28)
T 3ra3_A 8 ENDALEQKIA 17 (28)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 3333333333
No 282
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.70 E-value=3e+02 Score=22.53 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 020026 172 SAQLTLFQRDTTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 172 s~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq 202 (332)
.++++..+.+...|..+..+||..++.||.+
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445556666666666666554
No 283
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.60 E-value=2.7e+02 Score=21.98 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 020026 213 LKKEVERLK 221 (332)
Q Consensus 213 L~~EvqrLk 221 (332)
|.++|+.+|
T Consensus 70 lH~~V~~~K 78 (93)
T 3t98_B 70 IHENVKVLK 78 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 284
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.25 E-value=1.7e+02 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020026 184 DLSTENTELKLRLQAMEQQAQ 204 (332)
Q Consensus 184 ~L~sEN~eLK~RLqaLEqq~~ 204 (332)
.|..-|-.|..+++.||.++-
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~ 35 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCS 35 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443
No 285
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=23.19 E-value=4.3e+02 Score=24.05 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020026 151 ARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 151 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdalne~L~~EvqrLk~atg 225 (332)
++-++++|.+++.|..- .=.+-+..+|..+..|..|+..-+++|...=++ .+...+|+.-+.-+.....|+.
T Consensus 42 mkEW~eae~q~k~l~ka--dkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH~q-RV~a~ln~rrr~Ale~y~~ALq 113 (211)
T 3umh_A 42 MREWEEAERQAKNLPKA--DKKAVIQHFQEKVESLEQEAANERQQLVETHMA-RVEAMLNDRRRLALENYITALQ 113 (211)
T ss_dssp HHHHHHHHHTTSSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888887777652 211223556777778888888877777655333 3333555555555555555553
No 286
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.16 E-value=90 Score=21.51 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020026 153 YISELERKVQTLQTEAT 169 (332)
Q Consensus 153 yieeLE~kVq~Lq~ENs 169 (332)
.|..|+.+++.|+.|..
T Consensus 16 Qi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKH 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 287
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=23.14 E-value=2.6e+02 Score=26.16 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q 020026 90 RHRYSNSIDGTTS 102 (332)
Q Consensus 90 ~h~~s~s~d~~~~ 102 (332)
+|.|+.+||=.++
T Consensus 4 ~~~~~~~~~~~~~ 16 (407)
T 4h8s_A 4 HHHHSSGVDLGTE 16 (407)
T ss_dssp -------------
T ss_pred cccccccCCCCcc
Confidence 5788999996444
No 288
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.13 E-value=1.3e+02 Score=25.52 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEAT 169 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs 169 (332)
..||.++..+.....
T Consensus 3 ~~l~~~~~~~~~~~~ 17 (192)
T 2gkw_A 3 GLLESQLSRHDQMLS 17 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555554444333
No 289
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.09 E-value=1.7e+02 Score=25.48 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020026 146 SKERKARYISELERKVQTL 164 (332)
Q Consensus 146 SReRKkqyieeLE~kVq~L 164 (332)
+-++|++|+.+|..+...+
T Consensus 20 rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 20 RIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3346666666666554443
No 290
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=23.04 E-value=1.8e+02 Score=29.60 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhccCCC
Q 020026 209 LNEALKKEVERLKVATGEMMT 229 (332)
Q Consensus 209 lne~L~~EvqrLk~atge~~~ 229 (332)
++=.++.||.|||...|+.|+
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~ 486 (497)
T 2b9b_A 466 KIYHIENEIARIKKLIGEAPG 486 (497)
T ss_dssp HHHHHHHHHHHHTTTTCC---
T ss_pred hhhhhhHHHHHHHHHhccCCC
Confidence 344567899999999999875
No 291
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.74 E-value=2.5e+02 Score=21.32 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQRD 181 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lqr~ 181 (332)
.+++..|..++..|..+++.|+..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 292
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.59 E-value=2.8e+02 Score=27.53 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 020026 211 EALKKEVERLKV 222 (332)
Q Consensus 211 e~L~~EvqrLk~ 222 (332)
..|+.-|..|..
T Consensus 122 ~~L~~~v~~l~~ 133 (411)
T 3ghg_C 122 VNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 293
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=22.54 E-value=1.8e+02 Score=19.43 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020026 171 LSAQLTLFQRDTTDLSTENTELKLRLQA 198 (332)
Q Consensus 171 Ls~ql~~Lqr~~~~L~sEN~eLK~RLqa 198 (332)
|.+++..|..++..|+-.-..||+++.+
T Consensus 6 lkekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 6 LKEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555554443
No 294
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.37 E-value=2.7e+02 Score=21.36 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 020026 215 KEVERLK 221 (332)
Q Consensus 215 ~EvqrLk 221 (332)
.||...|
T Consensus 70 ~EIatYR 76 (86)
T 1x8y_A 70 MEIHAYR 76 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 295
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.37 E-value=2.8e+02 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQL 175 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql 175 (332)
+|++.|+.++..|..+...+..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555444444444333
No 296
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=22.22 E-value=3.1e+02 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 020026 209 LNEALKKEVERLK 221 (332)
Q Consensus 209 lne~L~~EvqrLk 221 (332)
..+.|++|+.-||
T Consensus 91 ~iesL~eEl~FLK 103 (119)
T 3ol1_A 91 KVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 297
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.92 E-value=4.9e+02 Score=26.86 Aligned_cols=22 Identities=23% Similarity=0.136 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 020026 204 QLRDALNEALKKEVERLKVATG 225 (332)
Q Consensus 204 ~Lrdalne~L~~EvqrLk~atg 225 (332)
....++.+++++|+..-+.++.
T Consensus 405 ~~~~a~~d~~~~~~s~~~~~ls 426 (551)
T 2b5u_A 405 NNKQAAFDAAAKEKSDADAALS 426 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhhhhh
Confidence 3444566677777766555543
No 298
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.63 E-value=1.3e+02 Score=19.06 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 020026 157 LERKVQTLQTEATTL 171 (332)
Q Consensus 157 LE~kVq~Lq~ENs~L 171 (332)
|..+|-.|.-|...|
T Consensus 5 lkdevgelkgevral 19 (27)
T 3v86_A 5 LKDEVGELKGEVRAL 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHH
Confidence 333344333333333
No 299
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.62 E-value=1.2e+02 Score=21.25 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 020026 191 ELKLRLQAME 200 (332)
Q Consensus 191 eLK~RLqaLE 200 (332)
.|..||.+||
T Consensus 20 ~LE~Ri~~LE 29 (43)
T 2pnv_A 20 DFEKRIVTLE 29 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 300
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.57 E-value=2.1e+02 Score=21.63 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020026 155 SELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAM 199 (332)
Q Consensus 155 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaL 199 (332)
..|..+-..|..++..|........ +...|.-+.=.||.+|..+
T Consensus 20 ~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~l 63 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSM 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHH
Confidence 3344444444444444433322111 3333444444444444444
No 301
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.42 E-value=3.1e+02 Score=21.80 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQLTLFQRD-----TTDLSTENTELKLRLQAMEQQ 202 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~-----~~~L~sEN~eLK~RLqaLEqq 202 (332)
+.|.+|+.+++.....-.-|...+..+... -..+..+-.++..+|..|...
T Consensus 22 ~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 22 QQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLE 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555555544444321 122334444444455555444
No 302
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=21.37 E-value=2.8e+02 Score=22.75 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020026 158 ERKVQTLQTEATTLSAQLTLFQ 179 (332)
Q Consensus 158 E~kVq~Lq~ENs~Ls~ql~~Lq 179 (332)
+.+...++.-.-.|+.|++.|+
T Consensus 10 ~~~~~k~E~~Ll~Ls~Qi~~LE 31 (103)
T 3mq1_A 10 HEQIKKGELALFYLQEQINHFE 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444443
No 303
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.24 E-value=2.3e+02 Score=20.16 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 140 RQSAARSKERKARYISELERKVQTLQTEATTLSAQLT 176 (332)
Q Consensus 140 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~ 176 (332)
=+-|-||=.|-.+-|++||.++-.-+..+..+...+.
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777777777788888877776666666666554
No 304
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.20 E-value=3.1e+02 Score=21.67 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020026 152 RYISELERKVQTLQTEATTLSAQ 174 (332)
Q Consensus 152 qyieeLE~kVq~Lq~ENs~Ls~q 174 (332)
..+..|+.+...|+.+...+.++
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543
No 305
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.00 E-value=2e+02 Score=24.98 Aligned_cols=11 Identities=9% Similarity=-0.022 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHH
Q 020026 129 PKRAKSRILANR 140 (332)
Q Consensus 129 pKR~K~RiLaNR 140 (332)
-+.+| +++.++
T Consensus 66 l~~i~-~~~~~~ 76 (278)
T 1r8e_A 66 LEEMK-KAQDLE 76 (278)
T ss_dssp HHHHH-HHTTSC
T ss_pred HHHHH-HHHHhC
Confidence 34556 666555
No 306
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=20.64 E-value=50 Score=31.60 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLF 178 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~L 178 (332)
|..||.+|..++++...|...+..+
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~ 30 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSN 30 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHH
Confidence 3445555555554444444444433
No 307
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.57 E-value=4.2e+02 Score=23.86 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQAQLRDAL 209 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~~Lrdal 209 (332)
++.|+.++..|+.++..|..++-.++.++..+......=+..+...-.+.-+++-|
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LL 116 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLL 116 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 308
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=20.27 E-value=5.1e+02 Score=23.88 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020026 154 ISELERKVQTLQTEATTLSAQLTLFQRDTTDLSTENTELKLRLQAMEQQA 203 (332)
Q Consensus 154 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr~~~~L~sEN~eLK~RLqaLEqq~ 203 (332)
|..+|.++..-+..++.-...|+.++-.....+.+-..|+.+++.++...
T Consensus 86 I~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 86 IKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 34444444444444444455555555555555555566666666665543
No 309
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.17 E-value=2.9e+02 Score=20.96 Aligned_cols=10 Identities=50% Similarity=0.753 Sum_probs=1.2
Q ss_pred HHHHHHHHHH
Q 020026 213 LKKEVERLKV 222 (332)
Q Consensus 213 L~~EvqrLk~ 222 (332)
|..|-.||..
T Consensus 56 LEGEe~Rl~~ 65 (74)
T 2xv5_A 56 LEGEEERLRL 65 (74)
T ss_dssp TTC-------
T ss_pred HhcCccccCC
Confidence 3344445443
No 310
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=20.02 E-value=3.8e+02 Score=22.31 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020026 148 ERKARYISELERKVQTLQTEATTLSAQ 174 (332)
Q Consensus 148 eRKkqyieeLE~kVq~Lq~ENs~Ls~q 174 (332)
++|.+...++|+++..+...-..+..+
T Consensus 57 ~kklqLkse~e~E~ae~k~KYD~~lqe 83 (115)
T 3vem_A 57 EKKSILKAELERKMAEVQAEFRRKFHE 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766665554444433
Done!