BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020031
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis
thaliana GN=MBP1 PE=1 SV=1
Length = 386
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 199/330 (60%), Positives = 252/330 (76%), Gaps = 24/330 (7%)
Query: 6 GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSV 65
GL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV
Sbjct: 78 GLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSV 137
Query: 66 ALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEG 124
+LDIVNFGE DDE +KLEALL AVNNND SH+VHVP G NALSDVLLSTP+FTGD EG
Sbjct: 138 SLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFTGD-EG 196
Query: 125 GSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKK 184
SG+ +AAAAAAA+G ++FGVDPN+DPELALALRVSMEEERARQEAAAK+AA+EA +K
Sbjct: 197 ASGYVSAAAAAAAAGGD-FDFGVDPNIDPELALALRVSMEEERARQEAAAKKAADEAGQK 255
Query: 185 EKQGEQQSSSQDVT--MTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDT 242
+K G+ S+SQ+ TD+++ P E D LL +AIAMS D
Sbjct: 256 DKDGDTASASQETVARTTDKNAEPMDE----------DSALLDQAIAMSVG-------DV 298
Query: 243 NMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSV 302
NMSE A++D +LALALQ+SM G + + + + LL +QAF+SS+L+SLPGVDP DP+V
Sbjct: 299 NMSEAADEDQDLALALQMSMS-GEESSEATGAGNNLLGNQAFISSVLSSLPGVDPNDPAV 357
Query: 303 KDVLTSMQNQSEPQEKKDEDKVSKEEEEKK 332
K++L S+ ++S+ E ++E K E+EKK
Sbjct: 358 KELLASLPDESKRTE-EEESSSKKGEDEKK 386
>sp|P55035|PSMD4_DROME 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila
melanogaster GN=Pros54 PE=1 SV=2
Length = 396
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 174/319 (54%), Gaps = 40/319 (12%)
Query: 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70
GE+NL GI++A L LKHRQ K + RI+VFVGSPI HE+ L ++LKK V +DIV
Sbjct: 82 GEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIV 141
Query: 71 NFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGF 128
+FG D N E L A + A+N D SHLV VP G + LSD LLS+PI G+
Sbjct: 142 SFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPIIQGED------ 193
Query: 129 AAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQG 188
A G + +EFGVDPN DPELALALRVSMEE+R RQE+ +RA + A
Sbjct: 194 ---GMGGAGLGGNVFEFGVDPNEDPELALALRVSMEEQRQRQESEQRRANPDGAPPTGGD 250
Query: 189 EQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSS-TPSYPSGRDTNMSEV 247
+ + +E + +E +LQ A+A+S+ TP NM+E
Sbjct: 251 AGGGGGVSGSGPGNEESAGAENE-----ANTEEAMLQRALALSTETPEDNLPDFANMTE- 304
Query: 248 AEDDPELALALQLSMQDGTKDAPSHS-----------------DMSQLLADQAFVSSILA 290
+ ++A A+Q+SMQD D+ + D S+++ D AF+ S+L
Sbjct: 305 ---EEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANAPMDVDEDYSEVIGDPAFLQSVLE 361
Query: 291 SLPGVDPEDPSVKDVLTSM 309
+LPGVDP+ +V+D + S+
Sbjct: 362 NLPGVDPQSEAVRDAVGSL 380
>sp|O35226|PSMD4_MOUSE 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus
GN=Psmd4 PE=1 SV=1
Length = 376
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 183/331 (55%), Gaps = 64/331 (19%)
Query: 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70
G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+
Sbjct: 82 GKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDII 141
Query: 71 NFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGF 128
NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S+PI G+G
Sbjct: 142 NFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGEG------ 193
Query: 129 AAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQG 188
A GAS +EFGVDP+ DPELALALRVSMEE+R RQE A+RAA +A +
Sbjct: 194 ----GAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGI- 248
Query: 189 EQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMS--STPSYPSGRDTNMSE 246
+ P +E D+ LL+ I P P ++S
Sbjct: 249 ---------------ATPGTE--------DSDDALLKMTINQQEFGRPGLP-----DLSS 280
Query: 247 VAEDDPELALALQLSMQDGTK--------DAPSHSDMS---------QLLADQAFVSSIL 289
+ E++ ++A A+Q+S+Q GT+ DA S D S ++ D F+ S+L
Sbjct: 281 MTEEE-QIAYAMQMSLQ-GTEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQSVL 338
Query: 290 ASLPGVDPEDPSVKDVLTSMQNQSEPQEKKD 320
+LPGVDP + +++ V+ ++ +Q+ K D
Sbjct: 339 ENLPGVDPNNAAIRSVMGALASQATKDGKND 369
>sp|Q58DA0|PSMD4_BOVIN 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus
GN=PSMD4 PE=2 SV=1
Length = 382
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 173/322 (53%), Gaps = 59/322 (18%)
Query: 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70
G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+
Sbjct: 82 GKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDII 141
Query: 71 NFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGF 128
NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S+PI G+G
Sbjct: 142 NFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGEG------ 193
Query: 129 AAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQG 188
A GAS +EFGVDP+ DPELALALRVSMEE RQ + AA + G
Sbjct: 194 ----GAMLGLGASDFEFGVDPSADPELALALRVSMEE--QRQRQEEEARRAAAASAAEAG 247
Query: 189 EQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVA 248
+ ++D D+ LL+ I S + ++S +
Sbjct: 248 IATAGTED----------------------SDDALLKMTI---SQQEFGRTGLPDLSSMT 282
Query: 249 EDDPELALALQLSMQ--------DGTKDAPSHSDMSQ---------LLADQAFVSSILAS 291
E++ ++A A+Q+S+Q DA S D S+ ++ D F+ S+L +
Sbjct: 283 EEE-QIAYAMQMSLQGAEFGQAESADMDASSAMDTSEPTKEEDDYDVMQDPEFLQSVLEN 341
Query: 292 LPGVDPEDPSVKDVLTSMQNQS 313
LPGVDP + ++++ + S+ +Q+
Sbjct: 342 LPGVDPNNEAIRNAMGSLASQA 363
>sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens
GN=PSMD4 PE=1 SV=1
Length = 377
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 173/322 (53%), Gaps = 59/322 (18%)
Query: 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70
G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+
Sbjct: 82 GKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDII 141
Query: 71 NFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGF 128
NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S+PI G+G
Sbjct: 142 NFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGEG------ 193
Query: 129 AAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQG 188
A GAS +EFGVDP+ DPELALALRVSMEE RQ + AA + G
Sbjct: 194 ----GAMLGLGASDFEFGVDPSADPELALALRVSMEE--QRQRQEEEARRAAAASAAEAG 247
Query: 189 EQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVA 248
+ ++D D+ LL+ I S + ++S +
Sbjct: 248 IATTGTED----------------------SDDALLKMTI---SQQEFGRTGLPDLSSMT 282
Query: 249 EDDPELALALQLSMQ--------DGTKDAPSHSDMSQ---------LLADQAFVSSILAS 291
E++ ++A A+Q+S+Q DA S D S+ ++ D F+ S+L +
Sbjct: 283 EEE-QIAYAMQMSLQGAEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLEN 341
Query: 292 LPGVDPEDPSVKDVLTSMQNQS 313
LPGVDP + ++++ + S+ +Q+
Sbjct: 342 LPGVDPNNEAIRNAMGSLASQA 363
>sp|O94444|RPN10_SCHPO 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1
Length = 243
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 118/181 (65%), Gaps = 17/181 (9%)
Query: 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA 66
L + G GIQ+AQLALKHR+NK Q+QRI+ FVGSPI ++K L + +++KKN+VA
Sbjct: 79 LPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVA 138
Query: 67 LDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGS 126
+DI++ GE N L+ + A N++DS HLV +PP P LSD++ +PI G
Sbjct: 139 IDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPI-------GQ 189
Query: 127 GFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEK 186
G A+ + +E+GVDPNLD ELALAL +SM EERARQE AA++++EE K+
Sbjct: 190 GVVAS--------QNQFEYGVDPNLDVELALALELSMAEERARQEVAAQKSSEETEDKKM 241
Query: 187 Q 187
Q
Sbjct: 242 Q 242
>sp|Q553E0|PSMD4_DICDI 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium
discoideum GN=psmD4 PE=2 SV=1
Length = 349
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 152/304 (50%), Gaps = 70/304 (23%)
Query: 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA 66
L+I G+++ + +Q+AQLAL+HRQN Q RII FVGSP+K K+ L + ++LKKN VA
Sbjct: 79 LKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVA 138
Query: 67 LDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIF-TGDGEGG 125
+DI+NFGE E N++KLEA + VNNND SHL+ VPPGP+ LSD++L +PI +G G+ G
Sbjct: 139 VDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPIVESGSGQFG 197
Query: 126 SGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSM--------EEERARQEAAAKRA 177
S F ++ + DP+LA+AL++S+ E +AR+EA
Sbjct: 198 SEF------------------INADTDPDLAMALKLSLEEEKQRQERERKAREEANGGST 239
Query: 178 AEEAAKKEKQGEQQSSSQDVTMTDQ----DSVPASEADDKKKTTKHDEGLLQEAIAMSST 233
E S+ DV D +++ S A DK + SST
Sbjct: 240 NSGTTTTTAPTE---SNMDVNFEDDPELAEALALSMATDKME-------------VQSST 283
Query: 234 PSYPSGRDTNMSEVAEDDPELALALQLSMQDGTKDAPSHSDMSQLLADQAFVSSILASLP 293
+ S + DD S+ DQ F++S L SLP
Sbjct: 284 TNTDSQPPQQQQQPPTDDTS----------------------SEAFKDQDFLNSTLNSLP 321
Query: 294 GVDP 297
GVDP
Sbjct: 322 GVDP 325
>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL
PE=5 SV=1
Length = 862
Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 166/322 (51%), Gaps = 59/322 (18%)
Query: 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70
G++ GI VA LALKHRQ + RII FVG+P++ +K L + + LKK V +DI+
Sbjct: 567 GKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDII 626
Query: 71 NFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGF 128
NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S PI G+G
Sbjct: 627 NFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPILAGEG------ 678
Query: 129 AAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQG 188
A GAS +EFGVDP+ DPELAL LRV MEE RQ + AA + G
Sbjct: 679 ----GAMMGLGASDFEFGVDPSADPELALVLRVFMEE--QRQRQEEEARQAAAASAAEAG 732
Query: 189 EQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVA 248
+ ++D D+ LL+ I S + ++S +
Sbjct: 733 IATTGTED----------------------SDDALLKMTI---SQQEFGHTGLPDLSSMT 767
Query: 249 EDDPELALALQLSMQ--------DGTKDAPSHSDMSQ---------LLADQAFVSSILAS 291
E++ ++ A+Q+S+Q DA S D S+ ++ D F+ S+L +
Sbjct: 768 EEE-KIVCAMQMSLQGAEFGLAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLEN 826
Query: 292 LPGVDPEDPSVKDVLTSMQNQS 313
LPGVDP + ++++ + S+ +Q+
Sbjct: 827 LPGVDPNNEAIRNAVGSLASQA 848
>sp|O17453|PSMD4_SCHMA 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma
mansoni PE=2 SV=2
Length = 420
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 174/362 (48%), Gaps = 98/362 (27%)
Query: 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70
G + + I++A LAL+HRQ + Q+ RI+ F+GSPI ++K L + ++LKK V +DI+
Sbjct: 81 GRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDII 140
Query: 71 NFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGF 128
NFGE+ E N +KL + +N D SHL+ V PG L D L+++P+ G E GSG
Sbjct: 141 NFGEN-ETNEQKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPVVAG--EDGSGM 196
Query: 129 AAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQG 188
A A G EFG+D DP+L ALRVSME++R RQE E G
Sbjct: 197 AGAGL--------GLEFGLDGAEDPDLLYALRVSMEDQRMRQE------------HEVNG 236
Query: 189 EQQSSSQDVTMTDQDSVPASEADDKKKTTKHDEGLLQEAIAMS----STPSYPSGRDTNM 244
+ ++S T S+PA +E +LQ+A+AMS +T S D ++
Sbjct: 237 DGSNTSVVAT-----SLPAGSG-------TSEEAMLQQALAMSMQMNNTESSSLPMDIDL 284
Query: 245 SEVAEDDPELALALQLSMQD---------------------------------------- 264
+ ++E+D ++A AL++S+Q
Sbjct: 285 AAMSEED-QIAYALRMSLQQMGEETTQPTTTTLESDKTIVEPSGVAMDIDQTPTKVTENP 343
Query: 265 -----------GTKDAPSHSDMSQLLADQAFVSSILASLPGVDPEDPSVK---DVLTSMQ 310
T P+ +D+ ++ D F+ S+L SLPGVD ++ V+ + LT Q
Sbjct: 344 NLSSSSGTLAAATSAVPTSADL-DVMYDAEFLESVLQSLPGVDTQNEDVRKAINALTKSQ 402
Query: 311 NQ 312
+Q
Sbjct: 403 SQ 404
>sp|P38886|RPN10_YEAST 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3
Length = 268
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 110/164 (67%), Gaps = 6/164 (3%)
Query: 5 AGL---EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLK 61
AGL +I G+L++A +Q+AQL LKHRQNK Q QRI+ FV SPI + L + + LK
Sbjct: 74 AGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLK 133
Query: 62 KNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPIFT 119
KN+VA+DI+NFGE E NTE L+ +AAVNN ++SHL+ V PGP L + + S+PI
Sbjct: 134 KNNVAVDIINFGE-IEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIIL 192
Query: 120 GDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSM 163
+G G G + + + + +FGVDP++DPELA+ALR+SM
Sbjct: 193 EEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
>sp|Q1BAI1|EFTS_MYCSS Elongation factor Ts OS=Mycobacterium sp. (strain MCS) GN=tsf PE=3
SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 81 EKLEALLAAVNNNDSSHLVH-----VPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAA 135
EKLE A + + +H +PP L + +TGDGE G+ A A A
Sbjct: 130 EKLELRRVAYFDGNVETYLHKRAADLPPAVGVLVE-------YTGDGENGTEAAHAVALQ 182
Query: 136 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ 195
A+ + Y D PE +A + EE AR E E+A K +G +
Sbjct: 183 IAALKAKYLTREDV---PEDVVANERRIAEETARNEGKP----EQALPKIVEGRVTGFYK 235
Query: 196 DVTMTDQDSVPASEADDKKKTTKHDEGLLQEA 227
DV + DQ SV D KKT K LL EA
Sbjct: 236 DVVLLDQPSVS-----DNKKTVK---ALLDEA 259
>sp|A1UEI1|EFTS_MYCSK Elongation factor Ts OS=Mycobacterium sp. (strain KMS) GN=tsf PE=3
SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 81 EKLEALLAAVNNNDSSHLVH-----VPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAA 135
EKLE A + + +H +PP L + +TGDGE G+ A A A
Sbjct: 130 EKLELRRVAYFDGNVETYLHKRAADLPPAVGVLVE-------YTGDGENGTEAAHAVALQ 182
Query: 136 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ 195
A+ + Y D PE +A + EE AR E E+A K +G +
Sbjct: 183 IAALKAKYLTREDV---PEDVVANERRIAEETARNEGKP----EQALPKIVEGRVTGFYK 235
Query: 196 DVTMTDQDSVPASEADDKKKTTKHDEGLLQEA 227
DV + DQ SV D KKT K LL EA
Sbjct: 236 DVVLLDQPSVS-----DNKKTVK---ALLDEA 259
>sp|A3PXY5|EFTS_MYCSJ Elongation factor Ts OS=Mycobacterium sp. (strain JLS) GN=tsf PE=3
SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 81 EKLEALLAAVNNNDSSHLVH-----VPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAA 135
EKLE A + + +H +PP L + +TGDGE G+ A A A
Sbjct: 130 EKLELRRVAYFDGNVETYLHKRAADLPPAVGVLVE-------YTGDGENGTEAAHAVALQ 182
Query: 136 AASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ 195
A+ + Y D PE +A + EE AR E E+A K +G +
Sbjct: 183 IAALKAKYLTREDV---PEDVVANERRIAEETARNEGKP----EQALPKIVEGRVTGFYK 235
Query: 196 DVTMTDQDSVPASEADDKKKTTKHDEGLLQEA 227
DV + DQ SV D KKT K LL EA
Sbjct: 236 DVVLLDQPSVS-----DNKKTVK---ALLDEA 259
>sp|Q61290|CAC1E_MOUSE Voltage-dependent R-type calcium channel subunit alpha-1E OS=Mus
musculus GN=Cacna1e PE=1 SV=1
Length = 2272
Score = 33.9 bits (76), Expect = 1.9, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 154 ELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDK 213
E +L VS+E E+ + ++ R+ E +E++ +QD+ T+ VP
Sbjct: 946 ERSLDEGVSVEGEKEHEPHSSHRSKEPTIHEEER------TQDLRRTNSLMVPRGSG--- 996
Query: 214 KKTTKHDEGLLQEAIAMSSTPSYPSGRDTNMSEV-AEDDPELALALQLSMQDGTKDAPSH 272
DE E + P G+D ++E AE E AL + + G + S
Sbjct: 997 -LVGALDEA---ETPLVQPQPELEVGKDAALTEQEAEGSSEQALLGDVQLDVGRGISQSE 1052
Query: 273 SDMSQLLA--DQAFV--SSILASLPGVDP-EDPSVKDVLTSMQNQSEP 315
D+S + A D+A +S+ ++P VDP D +V ++ ++ P
Sbjct: 1053 PDLSCMTANMDKATTESTSVTVAIPDVDPLVDSTVVNISNKTDGEASP 1100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.124 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,899,538
Number of Sequences: 539616
Number of extensions: 5276188
Number of successful extensions: 33115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 649
Number of HSP's that attempted gapping in prelim test: 29826
Number of HSP's gapped (non-prelim): 3179
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 61 (28.1 bits)