Query 020031
Match_columns 332
No_of_seqs 156 out of 221
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2884 26S proteasome regulat 100.0 2.4E-69 5.2E-74 497.0 15.6 168 1-177 73-241 (259)
2 COG5148 RPN10 26S proteasome r 100.0 5.5E-56 1.2E-60 402.7 14.6 162 1-179 73-234 (243)
3 cd01452 VWA_26S_proteasome_sub 100.0 5.9E-34 1.3E-38 256.2 11.1 114 2-116 74-187 (187)
4 PF04056 Ssl1: Ssl1-like; Int 99.0 1.4E-09 2.9E-14 99.5 8.2 103 3-115 70-172 (193)
5 cd01453 vWA_transcription_fact 98.2 4.1E-06 8.9E-11 74.4 8.2 100 4-113 76-176 (183)
6 cd01465 vWA_subgroup VWA subgr 97.3 0.0028 6E-08 53.2 9.9 83 4-88 66-151 (170)
7 PF13519 VWA_2: von Willebrand 96.8 0.013 2.8E-07 48.1 9.7 94 9-112 76-169 (172)
8 cd01458 vWA_ku Ku70/Ku80 N-ter 96.7 0.0057 1.2E-07 55.2 7.5 67 10-76 103-174 (218)
9 cd00198 vWFA Von Willebrand fa 96.6 0.011 2.4E-07 46.9 7.9 80 9-90 76-155 (161)
10 cd01479 Sec24-like Sec24-like: 95.8 0.05 1.1E-06 50.8 8.7 73 12-90 114-211 (244)
11 cd01471 vWA_micronemal_protein 95.7 0.047 1E-06 47.3 7.5 93 8-104 80-175 (186)
12 smart00327 VWA von Willebrand 95.5 0.074 1.6E-06 43.9 7.6 79 9-90 77-158 (177)
13 cd01468 trunk_domain trunk dom 95.4 0.064 1.4E-06 49.4 7.9 75 12-90 115-214 (239)
14 PF04811 Sec23_trunk: Sec23/Se 95.3 0.06 1.3E-06 49.4 7.2 74 12-89 115-215 (243)
15 PF02809 UIM: Ubiquitin intera 95.0 0.0058 1.3E-07 36.8 -0.3 17 248-264 1-17 (18)
16 cd01450 vWFA_subfamily_ECM Von 94.6 0.19 4E-06 41.1 7.7 75 11-89 78-154 (161)
17 PF13768 VWA_3: von Willebrand 94.4 0.18 3.9E-06 42.3 7.4 79 5-90 69-149 (155)
18 smart00726 UIM Ubiquitin-inter 94.2 0.03 6.6E-07 36.5 1.8 20 150-169 1-20 (26)
19 PF02809 UIM: Ubiquitin intera 94.1 0.027 5.8E-07 34.0 1.2 16 150-165 2-17 (18)
20 cd01461 vWA_interalpha_trypsin 94.1 0.34 7.4E-06 40.5 8.3 90 6-104 73-162 (171)
21 TIGR03436 acidobact_VWFA VWFA- 93.9 0.55 1.2E-05 44.0 10.2 81 10-90 138-231 (296)
22 cd01466 vWA_C3HC4_type VWA C3H 93.9 0.23 5.1E-06 42.3 7.0 86 4-99 68-154 (155)
23 cd01478 Sec23-like Sec23-like: 93.6 0.39 8.4E-06 45.9 8.7 76 12-89 140-245 (267)
24 cd01451 vWA_Magnesium_chelatas 93.3 0.54 1.2E-05 41.0 8.4 94 5-103 68-166 (178)
25 cd01480 vWA_collagen_alpha_1-V 93.2 0.52 1.1E-05 41.4 8.2 71 4-74 78-150 (186)
26 PTZ00441 sporozoite surface pr 93.0 0.45 9.7E-06 50.6 8.8 94 7-103 121-215 (576)
27 cd03811 GT1_WabH_like This fam 92.9 2.4 5.2E-05 37.0 11.9 60 33-94 186-246 (353)
28 cd01482 vWA_collagen_alphaI-XI 92.8 1.2 2.6E-05 38.1 9.8 86 9-102 75-162 (164)
29 cd01469 vWA_integrins_alpha_su 92.5 0.81 1.8E-05 40.0 8.4 91 8-104 74-171 (177)
30 smart00726 UIM Ubiquitin-inter 92.4 0.058 1.2E-06 35.2 0.9 20 249-268 1-20 (26)
31 cd01474 vWA_ATR ATR (Anthrax T 91.4 0.82 1.8E-05 40.0 7.3 93 4-104 71-166 (185)
32 TIGR00627 tfb4 transcription f 91.4 1.6 3.4E-05 42.6 9.8 96 11-114 117-219 (279)
33 PF03731 Ku_N: Ku70/Ku80 N-ter 91.3 0.3 6.5E-06 43.9 4.6 62 10-72 102-172 (224)
34 cd03819 GT1_WavL_like This fam 91.3 9.3 0.0002 34.8 14.3 83 34-118 183-267 (355)
35 cd01472 vWA_collagen von Wille 91.1 1.5 3.2E-05 37.2 8.3 86 6-101 71-161 (164)
36 PF03358 FMN_red: NADPH-depend 90.2 1.3 2.8E-05 37.1 7.1 59 36-94 1-72 (152)
37 PF00092 VWA: von Willebrand f 90.0 1.4 3E-05 36.7 7.1 91 8-103 74-167 (178)
38 PLN00162 transport protein sec 89.6 1.4 2.9E-05 48.1 8.5 63 13-76 262-354 (761)
39 cd01456 vWA_ywmD_type VWA ywmD 89.3 1.4 3.1E-05 39.1 7.0 79 4-90 107-192 (206)
40 cd01477 vWA_F09G8-8_type VWA F 89.0 2.2 4.8E-05 38.7 8.1 75 9-85 103-180 (193)
41 cd01467 vWA_BatA_type VWA BatA 89.0 1.7 3.7E-05 37.0 7.1 63 8-74 78-142 (180)
42 cd04951 GT1_WbdM_like This fam 88.8 8.8 0.00019 34.9 11.9 80 34-118 186-266 (360)
43 PF03853 YjeF_N: YjeF-related 88.8 3 6.5E-05 36.9 8.6 57 17-76 8-64 (169)
44 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.7 1 2.2E-05 32.4 4.2 37 38-74 3-39 (66)
45 cd03817 GT1_UGDG_like This fam 87.7 8.4 0.00018 34.3 10.8 64 33-98 199-263 (374)
46 cd03821 GT1_Bme6_like This fam 87.7 2.6 5.7E-05 37.4 7.6 61 32-92 199-260 (375)
47 cd03809 GT1_mtfB_like This fam 87.5 5.6 0.00012 35.7 9.7 136 34-171 193-342 (365)
48 cd01462 VWA_YIEM_type VWA YIEM 87.2 5.8 0.00013 33.1 9.1 70 4-76 66-136 (152)
49 cd01476 VWA_integrin_invertebr 87.1 4.3 9.3E-05 34.1 8.2 79 5-86 71-153 (163)
50 PF00534 Glycos_transf_1: Glyc 86.7 2.5 5.5E-05 35.1 6.6 85 31-118 10-96 (172)
51 cd01475 vWA_Matrilin VWA_Matri 86.1 6.2 0.00014 35.7 9.3 87 10-104 78-169 (224)
52 cd05844 GT1_like_7 Glycosyltra 86.0 16 0.00034 33.7 12.0 56 33-90 185-241 (367)
53 cd01473 vWA_CTRP CTRP for CS 85.8 6.2 0.00013 35.4 9.0 92 9-103 81-175 (192)
54 cd03801 GT1_YqgM_like This fam 85.6 6.1 0.00013 34.5 8.6 86 30-118 193-279 (374)
55 cd03799 GT1_amsK_like This is 85.2 3.6 7.8E-05 37.3 7.3 81 34-118 177-259 (355)
56 cd03820 GT1_amsD_like This fam 85.1 20 0.00044 31.3 11.7 57 33-91 175-232 (348)
57 cd01464 vWA_subfamily VWA subf 85.0 6.9 0.00015 33.8 8.7 80 6-88 72-159 (176)
58 cd01457 vWA_ORF176_type VWA OR 84.6 6.1 0.00013 35.1 8.4 85 6-91 75-167 (199)
59 cd01454 vWA_norD_type norD typ 83.7 5.7 0.00012 34.2 7.6 70 4-76 75-154 (174)
60 cd04962 GT1_like_5 This family 83.7 33 0.00072 31.6 13.1 79 34-118 195-274 (371)
61 cd04924 ACT_AK-Arch_2 ACT doma 83.4 2.1 4.5E-05 30.6 4.1 37 38-74 3-39 (66)
62 PRK05749 3-deoxy-D-manno-octul 82.6 21 0.00045 34.9 11.8 54 35-90 232-285 (425)
63 KOG1984 Vesicle coat complex C 82.6 2.7 5.7E-05 47.1 6.1 57 12-72 528-610 (1007)
64 PTZ00395 Sec24-related protein 80.3 4.5 9.7E-05 47.3 7.1 60 12-74 1075-1154(1560)
65 cd03794 GT1_wbuB_like This fam 79.4 45 0.00097 29.6 11.9 81 32-118 216-298 (394)
66 cd01463 vWA_VGCC_like VWA Volt 79.2 10 0.00022 33.2 7.7 83 4-89 86-178 (190)
67 cd03812 GT1_CapH_like This fam 78.8 13 0.00028 33.9 8.5 137 32-173 188-339 (358)
68 KOG2807 RNA polymerase II tran 77.5 11 0.00025 38.1 8.2 98 8-115 138-235 (378)
69 cd04916 ACT_AKiii-YclM-BS_2 AC 77.4 4.5 9.7E-05 29.0 4.1 37 38-74 3-39 (66)
70 PF00731 AIRC: AIR carboxylase 77.3 16 0.00036 32.7 8.4 78 37-118 2-82 (150)
71 cd00079 HELICc Helicase superf 77.3 24 0.00052 27.6 8.6 68 20-99 16-83 (131)
72 TIGR02031 BchD-ChlD magnesium 76.8 13 0.00028 39.4 8.9 95 4-103 473-582 (589)
73 COG5148 RPN10 26S proteasome r 76.5 1.3 2.9E-05 41.9 1.4 28 280-307 173-215 (243)
74 cd03823 GT1_ExpE7_like This fa 76.2 57 0.0012 29.0 11.8 42 33-76 188-230 (359)
75 cd04868 ACT_AK-like ACT domain 75.3 5.3 0.00011 26.9 3.8 37 38-74 2-38 (60)
76 cd03798 GT1_wlbH_like This fam 75.1 16 0.00035 32.1 7.7 58 31-90 197-255 (377)
77 cd03792 GT1_Trehalose_phosphor 73.8 57 0.0012 30.9 11.6 90 29-118 183-277 (372)
78 PRK13406 bchD magnesium chelat 73.5 27 0.00058 37.4 10.2 103 4-113 467-580 (584)
79 PRK06756 flavodoxin; Provision 73.5 5.7 0.00012 33.6 4.4 40 36-75 2-41 (148)
80 TIGR02442 Cob-chelat-sub cobal 73.2 15 0.00032 39.2 8.3 85 4-90 532-625 (633)
81 TIGR03449 mycothiol_MshA UDP-N 73.0 57 0.0012 31.1 11.5 59 34-92 217-281 (405)
82 PF00448 SRP54: SRP54-type pro 72.6 13 0.00028 33.8 6.7 55 37-91 2-56 (196)
83 cd03808 GT1_cap1E_like This fa 72.6 67 0.0014 28.2 12.1 44 33-76 185-229 (359)
84 cd04919 ACT_AK-Hom3_2 ACT doma 72.1 7 0.00015 28.2 4.0 37 38-74 3-39 (66)
85 TIGR03088 stp2 sugar transfera 71.3 80 0.0017 29.7 11.9 79 35-118 193-276 (374)
86 PRK13685 hypothetical protein; 70.5 22 0.00047 34.5 8.1 72 4-75 157-239 (326)
87 TIGR00578 ku70 ATP-dependent D 70.5 18 0.00038 38.5 8.1 60 13-72 117-181 (584)
88 COG5151 SSL1 RNA polymerase II 70.1 19 0.00042 36.6 7.7 103 8-117 165-268 (421)
89 PF03028 Dynein_heavy: Dynein 69.9 3.9 8.5E-05 43.5 3.2 40 37-76 117-156 (707)
90 cd03795 GT1_like_4 This family 69.9 73 0.0016 28.9 11.0 53 33-91 188-241 (357)
91 cd03813 GT1_like_3 This family 69.6 22 0.00048 35.7 8.3 76 17-92 274-352 (475)
92 cd04936 ACT_AKii-LysC-BS-like_ 69.5 8.4 0.00018 27.0 3.9 35 38-72 2-36 (63)
93 cd03807 GT1_WbnK_like This fam 69.3 81 0.0018 27.9 12.3 52 35-88 192-244 (365)
94 cd03800 GT1_Sucrose_synthase T 68.8 22 0.00048 33.0 7.5 57 35-91 219-280 (398)
95 cd04892 ACT_AK-like_2 ACT doma 68.6 8.9 0.00019 26.4 3.8 37 38-74 2-38 (65)
96 cd03822 GT1_ecORF704_like This 68.5 28 0.0006 31.3 7.9 44 33-76 182-226 (366)
97 cd04923 ACT_AK-LysC-DapG-like_ 67.9 9.5 0.00021 26.7 3.9 35 38-72 2-36 (63)
98 cd03814 GT1_like_2 This family 67.4 93 0.002 27.8 12.1 41 35-76 196-237 (364)
99 cd04921 ACT_AKi-HSDH-ThrA-like 67.3 10 0.00022 28.5 4.1 36 38-73 3-38 (80)
100 TIGR03567 FMN_reduc_SsuE FMN r 66.7 28 0.00061 30.4 7.4 55 37-91 1-64 (171)
101 PF14275 DUF4362: Domain of un 65.9 8.9 0.00019 32.3 3.9 28 68-96 4-31 (98)
102 PRK10569 NAD(P)H-dependent FMN 64.9 13 0.00028 33.8 5.0 66 36-103 1-75 (191)
103 TIGR02540 gpx7 putative glutat 64.8 29 0.00062 29.4 6.9 53 37-89 25-83 (153)
104 PF02441 Flavoprotein: Flavopr 64.7 11 0.00024 31.5 4.3 34 36-71 1-34 (129)
105 cd03411 Ferrochelatase_N Ferro 64.4 8.7 0.00019 33.6 3.7 84 20-106 40-124 (159)
106 cd01470 vWA_complement_factors 64.0 69 0.0015 28.1 9.4 89 10-103 82-189 (198)
107 TIGR00868 hCaCC calcium-activa 63.9 36 0.00077 38.4 9.1 74 8-89 378-452 (863)
108 PRK05569 flavodoxin; Provision 63.9 15 0.00033 30.5 4.9 41 36-76 2-42 (141)
109 TIGR02690 resist_ArsH arsenica 63.4 31 0.00067 32.5 7.4 72 23-94 14-92 (219)
110 PF03165 MH1: MH1 domain; Int 63.3 10 0.00022 31.9 3.8 37 50-102 2-40 (103)
111 cd03796 GT1_PIG-A_like This fa 63.3 30 0.00065 33.4 7.5 57 34-92 191-248 (398)
112 PF13477 Glyco_trans_4_2: Glyc 63.2 15 0.00033 29.6 4.7 36 37-76 1-36 (139)
113 PRK06703 flavodoxin; Provision 62.8 13 0.00029 31.4 4.5 41 36-76 2-42 (151)
114 cd01481 vWA_collagen_alpha3-VI 62.2 90 0.002 27.2 9.7 82 10-102 76-163 (165)
115 KOG2487 RNA polymerase II tran 61.5 19 0.00041 35.9 5.8 87 20-115 146-238 (314)
116 PRK15427 colanic acid biosynth 61.5 30 0.00065 34.2 7.3 57 36-94 222-279 (406)
117 cd03805 GT1_ALG2_like This fam 61.3 34 0.00073 32.1 7.3 66 34-99 209-285 (392)
118 PRK15484 lipopolysaccharide 1, 59.9 43 0.00093 32.6 8.0 43 34-76 191-234 (380)
119 PRK05568 flavodoxin; Provision 59.6 20 0.00044 29.7 5.0 40 37-76 3-42 (142)
120 COG1072 CoaA Panthothenate kin 59.0 60 0.0013 32.2 8.7 83 28-112 73-177 (283)
121 PRK00170 azoreductase; Reviewe 58.9 20 0.00042 31.5 5.0 40 36-75 2-46 (201)
122 PF11265 Med25_VWA: Mediator c 58.9 35 0.00077 32.6 7.0 88 3-95 95-203 (226)
123 TIGR03566 FMN_reduc_MsuE FMN r 58.3 16 0.00034 32.0 4.2 56 37-92 1-68 (174)
124 TIGR01162 purE phosphoribosyla 58.2 63 0.0014 29.4 8.1 70 39-112 2-71 (156)
125 COG0287 TyrA Prephenate dehydr 57.6 14 0.00031 35.8 4.2 58 38-103 66-123 (279)
126 TIGR01753 flav_short flavodoxi 57.4 18 0.00039 29.5 4.2 39 38-76 1-39 (140)
127 KOG2941 Beta-1,4-mannosyltrans 56.3 35 0.00076 35.4 6.8 64 30-103 7-70 (444)
128 cd00859 HisRS_anticodon HisRS 56.3 45 0.00098 24.4 5.9 55 41-102 5-59 (91)
129 PRK10307 putative glycosyl tra 54.5 55 0.0012 31.6 7.6 54 35-91 228-282 (412)
130 PTZ00235 DNA polymerase epsilo 53.9 52 0.0011 32.7 7.4 41 32-74 24-72 (291)
131 PRK03767 NAD(P)H:quinone oxido 53.6 24 0.00052 31.7 4.7 40 36-75 2-42 (200)
132 PF12257 DUF3608: Protein of u 53.0 32 0.0007 33.9 5.8 65 12-76 202-272 (281)
133 cd03018 PRX_AhpE_like Peroxire 52.8 48 0.001 27.2 6.1 50 36-90 30-83 (149)
134 PLN02871 UDP-sulfoquinovose:DA 52.6 24 0.00051 35.2 5.0 43 32-74 55-101 (465)
135 TIGR03788 marine_srt_targ mari 51.7 74 0.0016 33.5 8.6 80 5-89 341-420 (596)
136 COG3660 Predicted nucleoside-d 51.6 26 0.00056 35.1 4.9 78 7-89 132-218 (329)
137 PRK09271 flavodoxin; Provision 51.2 30 0.00064 30.1 4.8 38 36-73 1-38 (160)
138 PF10138 vWA-TerF-like: vWA fo 51.1 1.9E+02 0.0042 27.2 10.3 102 6-113 76-184 (200)
139 PF04244 DPRP: Deoxyribodipyri 50.9 4.4 9.4E-05 38.2 -0.5 73 30-114 36-111 (224)
140 cd04918 ACT_AK1-AT_2 ACT domai 50.1 35 0.00076 25.3 4.4 38 38-76 3-40 (65)
141 TIGR02400 trehalose_OtsA alpha 49.6 2.4E+02 0.0053 29.0 11.8 28 147-174 404-435 (456)
142 cd03416 CbiX_SirB_N Sirohydroc 49.6 88 0.0019 24.7 6.9 61 38-102 3-65 (101)
143 cd07043 STAS_anti-anti-sigma_f 49.0 45 0.00097 25.2 5.0 65 5-72 10-78 (99)
144 cd03791 GT1_Glycogen_synthase_ 48.7 92 0.002 30.7 8.3 54 34-89 294-348 (476)
145 COG0062 Uncharacterized conser 48.5 1.1E+02 0.0023 28.8 8.3 73 17-92 32-104 (203)
146 COG1819 Glycosyl transferases, 48.1 16 0.00036 36.7 3.1 41 35-76 1-41 (406)
147 PRK13317 pantothenate kinase; 48.0 27 0.00059 33.7 4.4 46 20-67 209-254 (277)
148 PRK14184 bifunctional 5,10-met 46.9 2.2E+02 0.0048 28.1 10.5 78 36-115 32-111 (286)
149 COG5242 TFB4 RNA polymerase II 46.3 1.2E+02 0.0026 29.9 8.4 93 13-115 129-225 (296)
150 cd02971 PRX_family Peroxiredox 46.2 61 0.0013 26.2 5.7 51 35-90 23-77 (140)
151 TIGR02095 glgA glycogen/starch 45.8 1.4E+02 0.0031 29.7 9.3 53 35-89 290-343 (473)
152 PF03850 Tfb4: Transcription f 45.0 76 0.0017 30.9 7.0 94 13-114 116-217 (276)
153 cd01460 vWA_midasin VWA_Midasi 43.3 1.3E+02 0.0029 29.1 8.3 100 11-113 137-257 (266)
154 cd03825 GT1_wcfI_like This fam 43.2 42 0.00092 30.5 4.7 40 36-75 1-41 (365)
155 cd04949 GT1_gtfA_like This fam 43.1 2.8E+02 0.0062 25.9 11.0 56 34-91 202-258 (372)
156 KOG0257 Kynurenine aminotransf 43.0 26 0.00057 36.4 3.6 40 39-88 175-219 (420)
157 PRK14179 bifunctional 5,10-met 42.7 3.4E+02 0.0075 26.7 11.2 77 37-115 34-112 (284)
158 PTZ00256 glutathione peroxidas 42.3 86 0.0019 27.7 6.4 47 43-89 53-102 (183)
159 cd02968 SCO SCO (an acronym fo 42.1 1.2E+02 0.0026 24.6 6.8 56 35-91 23-85 (142)
160 PF00763 THF_DHG_CYH: Tetrahyd 42.0 2.1E+02 0.0045 24.0 9.2 72 39-113 34-107 (117)
161 cd03788 GT1_TPS Trehalose-6-Ph 41.2 2.1E+02 0.0046 29.1 9.8 59 34-93 262-333 (460)
162 cd00860 ThrRS_anticodon ThrRS 41.0 1.3E+02 0.0027 22.6 6.4 49 48-103 12-60 (91)
163 PLN02948 phosphoribosylaminoim 40.4 1.9E+02 0.0041 30.8 9.6 85 25-113 400-484 (577)
164 PF00578 AhpC-TSA: AhpC/TSA fa 40.2 1.4E+02 0.003 23.4 6.8 52 35-91 26-81 (124)
165 TIGR00442 hisS histidyl-tRNA s 40.2 1.1E+02 0.0024 30.1 7.4 59 36-101 321-379 (397)
166 cd04913 ACT_AKii-LysC-BS-like_ 39.9 43 0.00094 23.8 3.5 34 38-73 3-36 (75)
167 KOG2935 Ataxin 3/Josephin [Gen 39.8 19 0.0004 35.7 1.9 35 219-265 217-251 (315)
168 cd05009 SIS_GlmS_GlmD_2 SIS (S 39.4 39 0.00084 27.8 3.6 68 27-109 52-119 (153)
169 cd04891 ACT_AK-LysC-DapG-like_ 39.3 52 0.0011 22.3 3.7 35 40-76 4-38 (61)
170 PF01075 Glyco_transf_9: Glyco 39.3 1.9E+02 0.0041 25.9 8.2 83 33-122 103-191 (247)
171 PRK08105 flavodoxin; Provision 39.1 43 0.00093 29.1 3.9 37 37-73 3-39 (149)
172 PF00534 Glycos_transf_1: Glyc 39.1 2.2E+02 0.0048 23.5 8.7 138 11-171 22-164 (172)
173 TIGR02415 23BDH acetoin reduct 39.0 84 0.0018 27.8 5.8 63 13-76 107-184 (254)
174 cd03792 GT1_Trehalose_phosphor 39.0 47 0.001 31.5 4.5 40 37-76 1-41 (372)
175 cd02068 radical_SAM_B12_BD B12 38.8 1.1E+02 0.0024 25.2 6.1 38 37-76 41-78 (127)
176 KOG1986 Vesicle coat complex C 38.8 77 0.0017 35.2 6.5 59 17-76 253-341 (745)
177 PRK14171 bifunctional 5,10-met 38.5 3.8E+02 0.0082 26.6 10.7 77 37-115 34-112 (288)
178 cd04946 GT1_AmsK_like This fam 38.2 2.8E+02 0.0061 27.3 9.9 52 36-89 230-284 (407)
179 PRK14191 bifunctional 5,10-met 38.2 3.6E+02 0.0079 26.6 10.5 78 36-115 32-111 (285)
180 TIGR00377 ant_ant_sig anti-ant 38.2 94 0.002 24.3 5.4 65 5-71 14-82 (108)
181 PRK06123 short chain dehydroge 38.2 98 0.0021 27.2 6.1 64 13-76 111-191 (248)
182 cd04915 ACT_AK-Ectoine_2 ACT d 37.9 83 0.0018 23.5 4.9 40 36-76 2-41 (66)
183 PRK14176 bifunctional 5,10-met 37.7 4.2E+02 0.0091 26.3 11.4 78 36-115 39-118 (287)
184 PRK10565 putative carbohydrate 37.7 1.6E+02 0.0034 30.9 8.4 54 18-76 46-99 (508)
185 cd01822 Lysophospholipase_L1_l 37.7 1.2E+02 0.0026 25.2 6.3 66 39-105 3-74 (177)
186 COG0647 NagD Predicted sugar p 37.6 99 0.0021 30.1 6.5 81 15-104 75-157 (269)
187 COG0426 FpaA Uncharacterized f 37.5 1.1E+02 0.0023 31.7 7.0 54 30-90 242-295 (388)
188 cd06844 STAS Sulphate Transpor 37.1 1E+02 0.0022 24.3 5.5 65 6-72 11-79 (100)
189 PRK00923 sirohydrochlorin coba 37.1 1.7E+02 0.0037 24.2 7.1 57 40-102 7-67 (126)
190 PRK14168 bifunctional 5,10-met 36.8 3.7E+02 0.008 26.7 10.3 78 36-115 34-113 (297)
191 smart00187 INB Integrin beta s 36.7 74 0.0016 33.2 5.7 84 4-88 194-313 (423)
192 PRK14177 bifunctional 5,10-met 36.5 4.3E+02 0.0094 26.1 11.6 86 26-115 26-113 (284)
193 cd06314 PBP1_tmGBP Periplasmic 36.3 2.1E+02 0.0045 25.5 8.0 38 37-74 122-160 (271)
194 TIGR00064 ftsY signal recognit 36.2 2.1E+02 0.0046 27.4 8.4 68 34-105 70-137 (272)
195 PRK14489 putative bifunctional 35.9 60 0.0013 32.2 4.8 40 32-71 201-240 (366)
196 PF02635 DrsE: DsrE/DsrF-like 35.6 1.2E+02 0.0026 23.7 5.7 68 36-104 1-84 (122)
197 PRK09739 hypothetical protein; 34.9 69 0.0015 28.6 4.7 40 36-75 4-45 (199)
198 cd08550 GlyDH-like Glycerol_de 34.9 1.5E+02 0.0032 29.0 7.3 65 36-104 23-87 (349)
199 PF12146 Hydrolase_4: Putative 34.7 47 0.001 26.0 3.2 41 36-76 15-58 (79)
200 TIGR02398 gluc_glyc_Psyn gluco 34.6 3.9E+02 0.0085 28.2 10.7 141 35-177 284-464 (487)
201 PLN03050 pyridoxine (pyridoxam 34.6 1.1E+02 0.0024 29.1 6.2 53 17-71 36-94 (246)
202 PRK07667 uridine kinase; Provi 34.3 1E+02 0.0022 27.5 5.6 49 21-74 6-55 (193)
203 PLN02530 histidine-tRNA ligase 34.2 1.3E+02 0.0027 31.3 7.0 48 49-103 413-460 (487)
204 PF09002 DUF1887: Domain of un 34.0 1.4E+02 0.003 30.0 7.1 68 37-107 28-97 (381)
205 PRK15179 Vi polysaccharide bio 34.0 1.3E+02 0.0028 33.0 7.4 57 36-94 517-574 (694)
206 PRK10590 ATP-dependent RNA hel 33.8 53 0.0012 33.1 4.2 49 33-87 243-292 (456)
207 PF07859 Abhydrolase_3: alpha/ 33.7 68 0.0015 27.7 4.3 36 37-73 168-203 (211)
208 cd01424 MGS_CPS_II Methylglyox 33.7 2.1E+02 0.0046 23.0 6.9 27 38-67 3-29 (110)
209 PRK07060 short chain dehydroge 33.6 96 0.0021 27.1 5.3 63 13-76 107-184 (245)
210 PRK10997 yieM hypothetical pro 33.5 1.4E+02 0.003 31.7 7.2 64 9-76 393-459 (487)
211 PF10293 DUF2405: Domain of un 33.3 46 0.00099 29.8 3.2 30 147-176 111-143 (157)
212 TIGR01452 PGP_euk phosphoglyco 33.1 2.2E+02 0.0049 26.6 8.0 75 13-92 65-157 (279)
213 PRK14193 bifunctional 5,10-met 33.0 3.1E+02 0.0068 27.0 9.1 78 36-115 33-112 (284)
214 PF02525 Flavodoxin_2: Flavodo 32.9 79 0.0017 27.9 4.7 40 36-75 1-44 (199)
215 cd00340 GSH_Peroxidase Glutath 32.5 1.6E+02 0.0035 24.9 6.3 55 35-89 23-82 (152)
216 TIGR02149 glgA_Coryne glycogen 32.5 4.2E+02 0.0092 24.8 13.0 54 34-90 199-255 (388)
217 PF07739 TipAS: TipAS antibiot 32.2 32 0.0007 27.6 1.9 17 294-310 51-67 (118)
218 PRK00035 hemH ferrochelatase; 32.2 34 0.00073 33.2 2.4 83 19-105 45-129 (333)
219 cd07041 STAS_RsbR_RsbS_like Su 32.1 1.3E+02 0.0028 23.8 5.3 64 7-72 14-81 (109)
220 cd02992 PDI_a_QSOX PDIa family 32.1 1.1E+02 0.0024 25.0 5.1 67 35-105 19-89 (114)
221 cd02429 PTH2_like Peptidyl-tRN 32.0 90 0.002 26.9 4.7 23 48-70 63-85 (116)
222 PRK09325 coenzyme F420-reducin 31.8 70 0.0015 30.8 4.4 52 35-89 93-149 (282)
223 PF01740 STAS: STAS domain; I 31.7 1.3E+02 0.0028 23.9 5.4 66 7-72 13-88 (117)
224 PF13905 Thioredoxin_8: Thiore 31.6 1.2E+02 0.0025 23.0 4.9 43 45-90 15-57 (95)
225 cd04912 ACT_AKiii-LysC-EC-like 31.5 91 0.002 23.7 4.2 37 38-74 3-39 (75)
226 PRK09004 FMN-binding protein M 31.4 70 0.0015 27.7 4.0 36 37-72 3-38 (146)
227 TIGR01754 flav_RNR ribonucleot 31.1 77 0.0017 26.7 4.1 33 36-68 1-33 (140)
228 PRK05723 flavodoxin; Provision 31.0 67 0.0014 28.2 3.8 36 36-71 1-36 (151)
229 PRK07097 gluconate 5-dehydroge 31.0 1.4E+02 0.0031 26.8 6.1 62 13-76 117-193 (265)
230 cd03116 MobB Molybdenum is an 30.8 87 0.0019 27.7 4.5 39 36-74 1-39 (159)
231 TIGR00197 yjeF_nterm yjeF N-te 30.6 1.3E+02 0.0029 27.5 5.9 51 17-72 30-80 (205)
232 PRK14194 bifunctional 5,10-met 30.5 5.6E+02 0.012 25.5 11.3 78 36-115 34-113 (301)
233 PF13727 CoA_binding_3: CoA-bi 30.5 2.3E+02 0.005 23.4 6.8 78 18-102 89-175 (175)
234 cd06599 GH31_glycosidase_Aec37 30.5 92 0.002 30.2 5.0 68 49-117 27-112 (317)
235 COG5028 Vesicle coat complex C 30.4 98 0.0021 34.9 5.7 56 13-73 388-461 (861)
236 PRK14189 bifunctional 5,10-met 30.2 3.9E+02 0.0084 26.4 9.3 77 37-115 34-112 (285)
237 cd00419 Ferrochelatase_C Ferro 30.1 1.6E+02 0.0034 25.4 5.9 18 93-112 89-106 (135)
238 TIGR01133 murG undecaprenyldip 30.0 2.1E+02 0.0045 26.5 7.1 82 34-119 177-275 (348)
239 PF07701 HNOBA: Heme NO bindin 30.0 17 0.00038 34.0 -0.0 24 37-60 129-152 (219)
240 PF02875 Mur_ligase_C: Mur lig 29.9 1.8E+02 0.0038 22.6 5.7 56 16-76 24-82 (91)
241 PRK14172 bifunctional 5,10-met 29.9 5.5E+02 0.012 25.3 10.3 74 39-115 37-112 (278)
242 cd00858 GlyRS_anticodon GlyRS 29.9 1.2E+02 0.0025 25.1 4.9 48 48-103 39-86 (121)
243 TIGR01160 SUI1_MOF2 translatio 29.7 56 0.0012 28.1 3.0 56 29-91 32-98 (110)
244 PRK07523 gluconate 5-dehydroge 29.7 1.2E+02 0.0026 27.0 5.3 62 13-76 117-193 (255)
245 PF04432 FrhB_FdhB_C: Coenzyme 29.5 1.6E+02 0.0034 25.7 5.9 51 35-90 3-57 (161)
246 cd02037 MRP-like MRP (Multiple 29.3 2.4E+02 0.0052 24.0 7.0 65 37-104 93-168 (169)
247 PRK11104 hemG protoporphyrinog 29.1 91 0.002 27.8 4.4 38 36-74 1-38 (177)
248 cd04935 ACT_AKiii-DAPDC_1 ACT 29.0 1.1E+02 0.0023 23.8 4.3 55 38-92 3-67 (75)
249 cd04955 GT1_like_6 This family 28.9 83 0.0018 28.7 4.2 38 39-76 2-44 (363)
250 cd02982 PDI_b'_family Protein 28.8 1.5E+02 0.0032 22.7 5.1 59 36-103 13-77 (103)
251 PRK14192 bifunctional 5,10-met 28.8 5.5E+02 0.012 25.0 11.2 86 26-115 26-113 (283)
252 PRK12420 histidyl-tRNA synthet 28.7 2.7E+02 0.0058 28.1 8.1 47 50-103 349-396 (423)
253 PF07819 PGAP1: PGAP1-like pro 28.7 1E+02 0.0022 28.5 4.8 27 21-47 98-124 (225)
254 PRK14434 acylphosphatase; Prov 28.6 1.2E+02 0.0027 24.6 4.8 46 52-101 20-75 (92)
255 cd01830 XynE_like SGNH_hydrola 28.6 1.7E+02 0.0037 25.6 6.0 66 39-105 2-84 (204)
256 KOG2199 Signal transducing ada 28.5 24 0.00051 36.9 0.7 23 246-268 161-183 (462)
257 smart00523 DWA Domain A in dwa 28.2 1.3E+02 0.0028 25.9 4.9 36 50-103 7-44 (109)
258 cd03415 CbiX_CbiC Archaeal sir 28.2 3.6E+02 0.0078 23.2 7.8 69 39-111 5-78 (125)
259 PRK01355 azoreductase; Reviewe 27.8 3E+02 0.0065 24.7 7.5 40 36-75 2-47 (199)
260 PF10147 CR6_interact: Growth 27.7 15 0.00032 35.0 -0.9 20 295-314 173-192 (217)
261 CHL00201 syh histidine-tRNA sy 27.7 1.7E+02 0.0037 29.7 6.5 48 49-103 337-384 (430)
262 PLN03049 pyridoxine (pyridoxam 27.6 3E+02 0.0065 28.7 8.4 57 17-76 42-98 (462)
263 PF07976 Phe_hydrox_dim: Pheno 27.4 1.3E+02 0.0027 26.9 5.0 31 31-61 57-88 (169)
264 TIGR02886 spore_II_AA anti-sig 27.4 1.9E+02 0.0042 22.7 5.6 67 4-72 9-79 (106)
265 PRK06242 flavodoxin; Provision 27.3 2E+02 0.0044 23.9 6.0 26 36-61 1-27 (150)
266 PTZ00372 endonuclease 4-like p 27.1 1.1E+02 0.0024 31.7 5.2 74 33-106 153-242 (413)
267 PF03180 Lipoprotein_9: NLPA l 27.0 33 0.00072 32.5 1.3 56 49-104 10-76 (237)
268 PRK08589 short chain dehydroge 27.0 1.5E+02 0.0032 27.1 5.5 61 13-76 113-188 (272)
269 PRK12742 oxidoreductase; Provi 27.0 2E+02 0.0044 25.0 6.2 60 13-76 105-180 (237)
270 PF01903 CbiX: CbiX; InterPro 26.9 47 0.001 26.3 2.0 57 43-103 2-59 (105)
271 cd03413 CbiK_C Anaerobic cobal 26.9 3E+02 0.0065 22.7 6.8 59 39-103 3-64 (103)
272 PRK06947 glucose-1-dehydrogena 26.8 1.9E+02 0.0042 25.5 6.1 64 13-76 111-191 (248)
273 TIGR00555 panK_eukar pantothen 26.8 1.2E+02 0.0025 29.8 5.0 43 20-64 217-259 (279)
274 TIGR00930 2a30 K-Cl cotranspor 26.4 2.1E+02 0.0046 32.6 7.5 76 12-91 550-630 (953)
275 cd06595 GH31_xylosidase_XylS-l 26.3 58 0.0013 31.2 2.9 53 48-101 22-93 (292)
276 PF02153 PDH: Prephenate dehyd 26.2 37 0.00081 31.8 1.5 59 37-103 46-104 (258)
277 PRK09922 UDP-D-galactose:(gluc 26.2 2E+02 0.0043 27.4 6.4 60 35-99 179-241 (359)
278 cd08195 DHQS Dehydroquinate sy 26.1 3.6E+02 0.0079 26.3 8.3 67 36-104 25-95 (345)
279 cd03409 Chelatase_Class_II Cla 26.1 3E+02 0.0065 21.2 6.4 63 39-105 4-69 (101)
280 TIGR01630 psiM2_ORF9 phage unc 26.1 3.2E+02 0.0069 23.0 7.0 83 21-116 35-120 (142)
281 PRK04837 ATP-dependent RNA hel 26.0 1.2E+02 0.0025 30.2 5.0 47 34-86 254-301 (423)
282 cd01839 SGNH_arylesterase_like 25.7 1.5E+02 0.0032 25.9 5.1 26 54-80 29-54 (208)
283 PRK14974 cell division protein 25.6 1.1E+02 0.0024 30.6 4.7 55 35-90 139-194 (336)
284 PRK14182 bifunctional 5,10-met 25.6 4.8E+02 0.01 25.8 9.0 77 37-115 32-110 (282)
285 COG1679 Predicted aconitase [G 25.5 87 0.0019 32.5 4.0 38 36-74 289-328 (403)
286 PRK08063 enoyl-(acyl carrier p 25.5 2E+02 0.0044 25.3 5.9 62 13-76 112-188 (250)
287 cd03825 GT1_wcfI_like This fam 25.4 5.1E+02 0.011 23.5 11.9 46 31-76 186-235 (365)
288 PF01261 AP_endonuc_2: Xylose 25.3 4.1E+02 0.009 22.4 8.4 58 35-92 85-156 (213)
289 PHA02594 nadV nicotinamide pho 25.3 81 0.0018 33.2 3.9 39 36-76 333-371 (470)
290 COG3867 Arabinogalactan endo-1 25.3 1.8E+02 0.0039 29.9 6.0 76 9-90 97-205 (403)
291 cd01672 TMPK Thymidine monopho 25.2 2.5E+02 0.0055 23.6 6.3 34 38-71 2-35 (200)
292 cd04955 GT1_like_6 This family 25.0 2.9E+02 0.0064 25.1 7.1 38 36-76 193-231 (363)
293 COG1032 Fe-S oxidoreductase [E 25.0 1.6E+02 0.0035 28.7 5.7 44 39-94 104-148 (490)
294 TIGR03289 frhB coenzyme F420 h 25.0 1.1E+02 0.0023 29.7 4.3 52 36-90 92-148 (275)
295 PRK00726 murG undecaprenyldiph 25.0 1.1E+02 0.0023 28.9 4.3 38 36-74 2-39 (357)
296 PF14581 SseB_C: SseB protein 24.9 1.7E+02 0.0038 23.6 5.0 53 18-74 33-90 (108)
297 PRK06171 sorbitol-6-phosphate 24.7 2E+02 0.0042 25.9 5.8 61 13-75 116-191 (266)
298 PF00762 Ferrochelatase: Ferro 24.6 93 0.002 30.6 3.9 59 42-106 63-125 (316)
299 PLN02476 O-methyltransferase 24.6 1.5E+02 0.0032 29.0 5.3 54 53-106 211-271 (278)
300 cd03015 PRX_Typ2cys Peroxiredo 24.4 2.4E+02 0.0051 24.4 6.1 49 37-90 32-84 (173)
301 cd01835 SGNH_hydrolase_like_3 24.4 2.6E+02 0.0057 23.9 6.3 52 39-90 4-61 (193)
302 COG0712 AtpH F0F1-type ATP syn 24.3 1.4E+02 0.0031 27.1 4.8 29 34-62 105-133 (178)
303 PRK14173 bifunctional 5,10-met 24.3 3.6E+02 0.0078 26.7 7.9 77 37-115 31-109 (287)
304 cd03808 GT1_cap1E_like This fa 24.3 1.1E+02 0.0024 26.8 4.0 38 39-76 2-39 (359)
305 PRK07308 flavodoxin; Validated 24.2 1.5E+02 0.0033 25.0 4.7 40 37-76 3-42 (146)
306 PF07131 DUF1382: Protein of u 24.2 82 0.0018 24.8 2.7 36 13-58 7-42 (61)
307 PRK11776 ATP-dependent RNA hel 24.1 1.1E+02 0.0024 30.7 4.4 36 35-76 242-277 (460)
308 COG4907 Predicted membrane pro 24.1 30 0.00064 36.9 0.4 23 81-103 527-551 (595)
309 COG1393 ArsC Arsenate reductas 24.1 2.4E+02 0.0051 24.1 5.9 49 39-91 3-51 (117)
310 PRK14174 bifunctional 5,10-met 23.9 4.9E+02 0.011 25.8 8.8 79 35-115 31-111 (295)
311 PF00381 PTS-HPr: PTS HPr comp 23.8 2.2E+02 0.0047 22.2 5.2 71 11-88 12-82 (84)
312 PRK12829 short chain dehydroge 23.8 2.4E+02 0.0053 24.9 6.2 63 13-76 117-194 (264)
313 TIGR02918 accessory Sec system 23.8 2.3E+02 0.0049 29.5 6.7 77 36-118 319-396 (500)
314 cd04914 ACT_AKi-DapG-BS_1 ACT 23.7 1.2E+02 0.0026 22.8 3.6 31 41-73 6-36 (67)
315 PLN02757 sirohydrochlorine fer 23.7 1.3E+02 0.0028 26.7 4.3 62 38-103 17-80 (154)
316 cd06533 Glyco_transf_WecG_TagA 23.6 4.6E+02 0.0099 23.2 7.8 89 16-114 29-117 (171)
317 PRK00654 glgA glycogen synthas 23.4 4E+02 0.0086 26.8 8.2 54 35-90 281-335 (466)
318 PLN02516 methylenetetrahydrofo 23.3 7.5E+02 0.016 24.7 10.5 75 38-115 43-119 (299)
319 PRK14187 bifunctional 5,10-met 23.3 7.3E+02 0.016 24.7 9.8 77 37-115 34-112 (294)
320 PF08821 CGGC: CGGC domain; I 23.3 1.4E+02 0.003 25.2 4.3 35 36-74 38-73 (107)
321 PRK06523 short chain dehydroge 23.3 2.2E+02 0.0048 25.3 5.8 62 13-76 109-186 (260)
322 PRK04537 ATP-dependent RNA hel 23.3 1.6E+02 0.0035 31.1 5.7 48 34-87 256-304 (572)
323 PRK12428 3-alpha-hydroxysteroi 23.1 2.1E+02 0.0045 25.7 5.7 31 12-46 69-99 (241)
324 COG0655 WrbA Multimeric flavod 23.1 1.5E+02 0.0033 26.7 4.8 40 36-75 1-42 (207)
325 PRK04155 chaperone protein Hch 22.8 3.4E+02 0.0074 26.5 7.4 25 48-72 74-98 (287)
326 cd07042 STAS_SulP_like_sulfate 22.6 3E+02 0.0066 20.9 5.8 65 7-72 13-81 (107)
327 cd03820 GT1_amsD_like This fam 22.6 1.7E+02 0.0038 25.5 4.9 39 37-75 1-41 (348)
328 cd00587 HCP_like The HCP famil 22.6 1E+02 0.0022 30.2 3.7 33 34-66 93-126 (258)
329 PRK14501 putative bifunctional 22.6 6.8E+02 0.015 27.2 10.3 59 35-93 264-334 (726)
330 PRK14494 putative molybdopteri 22.5 1.4E+02 0.003 28.3 4.5 36 36-72 1-37 (229)
331 PF05990 DUF900: Alpha/beta hy 22.5 3E+02 0.0066 25.6 6.7 85 32-116 14-115 (233)
332 TIGR01133 murG undecaprenyldip 22.3 1.2E+02 0.0026 28.1 4.0 17 54-70 18-34 (348)
333 cd06547 GH85_ENGase Endo-beta- 22.3 76 0.0016 31.7 2.9 75 5-93 58-134 (339)
334 cd08549 G1PDH_related Glycerol 22.3 4.2E+02 0.0092 25.8 8.0 71 36-111 25-95 (332)
335 PF04042 DNA_pol_E_B: DNA poly 22.3 1.7E+02 0.0038 25.8 4.9 64 39-103 1-86 (209)
336 PRK05294 carB carbamoyl phosph 22.3 4.6E+02 0.0099 30.0 9.2 49 13-66 917-965 (1066)
337 PRK11622 hypothetical protein; 22.2 6.6E+02 0.014 24.8 9.4 80 17-102 8-106 (401)
338 TIGR00130 frhD coenzyme F420-r 22.0 3.2E+02 0.0069 23.7 6.4 42 35-76 3-48 (153)
339 COG0378 HypB Ni2+-binding GTPa 22.0 1.2E+02 0.0027 28.8 4.0 60 36-97 13-77 (202)
340 TIGR00249 sixA phosphohistidin 22.0 5.2E+02 0.011 22.3 8.5 67 37-105 44-110 (152)
341 cd07766 DHQ_Fe-ADH Dehydroquin 21.8 4.7E+02 0.01 25.0 8.1 70 36-111 24-93 (332)
342 PRK08263 short chain dehydroge 21.8 1.8E+02 0.0038 26.5 5.0 30 13-44 107-136 (275)
343 PRK12859 3-ketoacyl-(acyl-carr 21.8 2.9E+02 0.0064 24.8 6.4 62 13-76 126-202 (256)
344 PF13460 NAD_binding_10: NADH( 21.7 4.8E+02 0.01 21.9 7.3 75 18-101 11-96 (183)
345 cd04446 DEP_DEPDC4 DEP (Dishev 21.6 48 0.001 27.8 1.1 44 23-69 11-73 (95)
346 PF04412 DUF521: Protein of un 21.6 1.2E+02 0.0027 31.2 4.2 54 35-91 288-345 (400)
347 PF00070 Pyr_redox: Pyridine n 21.5 3.6E+02 0.0077 20.2 6.2 47 16-68 9-58 (80)
348 cd03811 GT1_WabH_like This fam 21.4 1.6E+02 0.0034 25.7 4.4 40 37-76 1-41 (353)
349 PF13692 Glyco_trans_1_4: Glyc 21.3 1.9E+02 0.0041 22.9 4.5 40 37-76 3-44 (135)
350 cd01834 SGNH_hydrolase_like_2 21.3 1.7E+02 0.0036 24.5 4.4 66 39-105 4-71 (191)
351 cd06312 PBP1_ABC_sugar_binding 21.2 4.7E+02 0.01 23.3 7.5 51 15-69 109-160 (271)
352 cd03414 CbiX_SirB_C Sirohydroc 21.1 3.9E+02 0.0084 21.5 6.4 60 39-102 5-66 (117)
353 TIGR03682 arCOG04112 arCOG0411 21.1 2.2E+02 0.0047 28.1 5.7 74 36-119 213-288 (308)
354 PLN03063 alpha,alpha-trehalose 21.1 1.1E+03 0.024 26.3 11.7 28 147-174 425-456 (797)
355 TIGR00109 hemH ferrochelatase. 21.1 6E+02 0.013 24.9 8.7 91 10-103 205-302 (322)
356 COG4643 Uncharacterized protei 20.9 65 0.0014 33.0 2.1 98 2-104 173-289 (366)
357 cd03794 GT1_wbuB_like This fam 20.8 1E+02 0.0022 27.5 3.1 38 39-76 2-43 (394)
358 PTZ00110 helicase; Provisional 20.8 2.1E+02 0.0046 30.0 5.9 49 34-88 376-425 (545)
359 cd03789 GT1_LPS_heptosyltransf 20.8 3.6E+02 0.0077 24.8 6.8 51 36-90 122-175 (279)
360 PRK00889 adenylylsulfate kinas 20.8 2E+02 0.0042 24.7 4.8 37 34-70 2-38 (175)
361 PRK12827 short chain dehydroge 20.7 2.8E+02 0.0061 24.1 5.8 63 13-76 117-194 (249)
362 TIGR01357 aroB 3-dehydroquinat 20.7 4.9E+02 0.011 25.3 8.0 72 36-111 21-96 (344)
363 smart00727 STI1 Heat shock cha 20.7 75 0.0016 21.6 1.8 22 276-304 18-39 (41)
364 PRK08264 short chain dehydroge 20.7 5.7E+02 0.012 22.3 8.6 99 13-115 104-228 (238)
365 cd03818 GT1_ExpC_like This fam 20.6 7.6E+02 0.017 23.7 12.9 40 35-74 210-251 (396)
366 PRK12330 oxaloacetate decarbox 20.5 5.8E+02 0.013 27.2 9.0 81 7-92 114-195 (499)
367 PTZ00056 glutathione peroxidas 20.4 2.2E+02 0.0047 25.8 5.2 55 36-90 41-101 (199)
368 PF05762 VWA_CoxE: VWA domain 20.3 2.9E+02 0.0064 25.4 6.1 68 8-76 23-100 (222)
369 TIGR00853 pts-lac PTS system, 20.3 2E+02 0.0043 23.4 4.4 38 36-74 4-41 (95)
370 PF10740 DUF2529: Protein of u 20.2 1.6E+02 0.0034 27.4 4.2 35 34-71 81-115 (172)
371 PRK00037 hisS histidyl-tRNA sy 20.2 4.6E+02 0.0099 25.9 7.8 48 49-103 330-377 (412)
372 PRK03692 putative UDP-N-acetyl 20.2 5.2E+02 0.011 24.7 7.9 87 15-114 87-175 (243)
373 PRK06124 gluconate 5-dehydroge 20.1 2.8E+02 0.0062 24.6 5.9 62 13-76 118-194 (256)
374 PRK10792 bifunctional 5,10-met 20.1 8.5E+02 0.018 24.1 9.9 77 37-115 35-113 (285)
375 cd04962 GT1_like_5 This family 20.1 1.3E+02 0.0027 27.8 3.7 37 37-73 2-38 (371)
376 PRK07313 phosphopantothenoylcy 20.0 1.2E+02 0.0026 27.5 3.4 34 36-71 2-35 (182)
No 1
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-69 Score=496.95 Aligned_cols=168 Identities=59% Similarity=0.904 Sum_probs=155.4
Q ss_pred CCCCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcH
Q 020031 1 MLLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT 80 (332)
Q Consensus 1 ~~~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~ 80 (332)
|++||.|.++|+|+|.+|||||||||||||||+||||||+||||||.+++++|+++||+||||||+||||+|||.. +|+
T Consensus 73 ls~lh~i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~-~~~ 151 (259)
T KOG2884|consen 73 LSKLHGIQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAE-NNT 151 (259)
T ss_pred HHHhcCCCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecccc-ccH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred HHHHHHHHHHhc-CCCceEEEeCCCCchhhHHhhhcCcccCCCCCCCchhHhHHhhhcCCCCCCcccCCCCCCHHHHHHH
Q 020031 81 EKLEALLAAVNN-NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALAL 159 (332)
Q Consensus 81 ~kL~~fi~~vN~-~~~Shlv~VP~G~~~LsD~l~sSpI~~ge~~~g~~~~~~~~~~~~~~~~~fefGvDP~~DPELAmAL 159 (332)
++|..||+++|+ +++||||+||||| +|||+|++||||.||+ ||++ ++.++.|..|+|||||++||||||||
T Consensus 152 e~l~~fida~N~~~~gshlv~Vppg~-~L~d~l~ssPii~ge~-g~a~------~~~~a~g~~f~fgvdp~~DPELAlAL 223 (259)
T KOG2884|consen 152 EKLFEFIDALNGKGDGSHLVSVPPGP-LLSDALLSSPIIQGED-GGAA------AGLGANGMDFEFGVDPEDDPELALAL 223 (259)
T ss_pred HHHHHHHHHhcCCCCCceEEEeCCCc-cHHHHhhcCceeccCc-cccc------ccccccccccccCCCcccCHHHHHHH
Confidence 999999999999 7899999999999 8999999999999987 2222 22344556899999999999999999
Q ss_pred HhcHHHHHHHHHHHHHHH
Q 020031 160 RVSMEEERARQEAAAKRA 177 (332)
Q Consensus 160 R~SmEEEr~RQe~~~~~~ 177 (332)
|+||||||+|||++++++
T Consensus 224 RlSMEEer~rQe~aa~~~ 241 (259)
T KOG2884|consen 224 RLSMEEERARQERAAQKA 241 (259)
T ss_pred HhhHHHHHHHHHHHhhhc
Confidence 999999999999777654
No 2
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-56 Score=402.73 Aligned_cols=162 Identities=48% Similarity=0.728 Sum_probs=149.9
Q ss_pred CCCCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcH
Q 020031 1 MLLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT 80 (332)
Q Consensus 1 ~~~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~ 80 (332)
++.||+|.+.|.++|.++||||+|+||||+||.||||||+||||||.+++++|++|||+||||||+||||+|||.. |.
T Consensus 73 lt~lhd~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~--n~ 150 (243)
T COG5148 73 LTFLHDIRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAA--NM 150 (243)
T ss_pred HHHhccccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhh--hh
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred HHHHHHHHHHhcCCCceEEEeCCCCchhhHHhhhcCcccCCCCCCCchhHhHHhhhcCCCCCCcccCCCCCCHHHHHHHH
Q 020031 81 EKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALR 160 (332)
Q Consensus 81 ~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~sSpI~~ge~~~g~~~~~~~~~~~~~~~~~fefGvDP~~DPELAmALR 160 (332)
.-|..||+++|+.++|||+++||+|.+|+++|-+||| |.| .-|+.+.||||||||+|||||||||
T Consensus 151 ~~l~efIda~N~~dsshl~~~~P~p~ll~~~~~~spi--g~g-------------~~g~~~~~e~gvDp~lDpELA~Alr 215 (243)
T COG5148 151 AGLFEFIDATNFSDSSHLEVKPPNPELLDRVLPFSPI--GQG-------------VVGDDLQLEYGVDPNLDPELAEALR 215 (243)
T ss_pred hHHHHHHHhhccccceeeEecCCCHHHHHhhccCCcc--ccc-------------cccCccceecCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999998 222 1122346999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHH
Q 020031 161 VSMEEERARQEAAAKRAAE 179 (332)
Q Consensus 161 ~SmEEEr~RQe~~~~~~~~ 179 (332)
+||||||+||+.++++..+
T Consensus 216 LSmeEek~rQe~~~qk~~e 234 (243)
T COG5148 216 LSMEEEKKRQEVAAQKSSE 234 (243)
T ss_pred hhHHHHHHHHHHHHHhhhh
Confidence 9999999999998876543
No 3
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=100.00 E-value=5.9e-34 Score=256.15 Aligned_cols=114 Identities=58% Similarity=0.854 Sum_probs=111.0
Q ss_pred CCCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHH
Q 020031 2 LLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 81 (332)
Q Consensus 2 ~~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~ 81 (332)
..||.++++|.++|.+||++|+++||||++|.++||||+|||||+..+++.+.+++|+|||+||.||||.||+.+ +|++
T Consensus 74 ~~L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~-~~~~ 152 (187)
T cd01452 74 SKLHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID-DNTE 152 (187)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC-CCHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHhcCCCceEEEeCCCCchhhHHhhhcC
Q 020031 82 KLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTP 116 (332)
Q Consensus 82 kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~sSp 116 (332)
||++|+++||++++||||+||||+++|||+|++||
T Consensus 153 ~l~~~~~~~~~~~~s~~~~~~~~~~~lsd~~~~s~ 187 (187)
T cd01452 153 KLTAFIDAVNGKDGSHLVSVPPGENLLSDALLSSP 187 (187)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCCchhHHHhhcCC
Confidence 99999999999999999999999999999999998
No 4
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.98 E-value=1.4e-09 Score=99.48 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=87.5
Q ss_pred CCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHH
Q 020031 3 LDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 82 (332)
Q Consensus 3 ~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~k 82 (332)
.+|+..+.|+..|-+||.+|+.+|||++.... ++||+++||....|..++.++.++|||+||.|+||.|+-+. ..
T Consensus 70 ~~~~~~~~G~~SLqN~Le~A~~~L~~~p~~~s-rEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laaEv----~I 144 (193)
T PF04056_consen 70 KLRKLEPSGEPSLQNGLEMARSSLKHMPSHGS-REILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAAEV----YI 144 (193)
T ss_pred HhccCCCCCChhHHHHHHHHHHHHhhCccccc-eEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhHHH----HH
Confidence 46677899999999999999999999997654 58999999999999999999999999999999999998766 78
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCchhhHHhhhc
Q 020031 83 LEALLAAVNNNDSSHLVHVPPGPNALSDVLLST 115 (332)
Q Consensus 83 L~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~sS 115 (332)
++.+.+..+ +.+.|.+-+ .-|.|.|+..
T Consensus 145 ~k~i~~~T~---G~y~V~lde--~H~~~lL~~~ 172 (193)
T PF04056_consen 145 CKKICKETG---GTYGVILDE--DHFKELLMEH 172 (193)
T ss_pred HHHHHHhhC---CEEEEecCH--HHHHHHHHhh
Confidence 999998885 455555544 3388888776
No 5
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.24 E-value=4.1e-06 Score=74.41 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=71.3
Q ss_pred Cccc-ccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHH
Q 020031 4 DAGL-EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 82 (332)
Q Consensus 4 lH~i-~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~k 82 (332)
|+.+ .++|..+|..||++|.-.|||+. ....+|||+|+++.-..+...+..++++|||++|.|.+|.||.. .+.
T Consensus 76 L~~~~~~~G~t~l~~aL~~A~~~l~~~~-~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~----~~~ 150 (183)
T cd01453 76 LKTARECSGEPSLQNGLEMALESLKHMP-SHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE----MHI 150 (183)
T ss_pred hhcccCCCCchhHHHHHHHHHHHHhcCC-ccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH----HHH
Confidence 4444 56788999999999999999874 33356788888875545555677899999999999999999953 355
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCchhhHHhh
Q 020031 83 LEALLAAVNNNDSSHLVHVPPGPNALSDVLL 113 (332)
Q Consensus 83 L~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~ 113 (332)
|+...++. ++++|...-+ .-|.+++.
T Consensus 151 L~~ia~~t---gG~~~~~~~~--~~l~~~~~ 176 (183)
T cd01453 151 CKEICKAT---NGTYKVILDE--THLKELLL 176 (183)
T ss_pred HHHHHHHh---CCeeEeeCCH--HHHHHHHH
Confidence 66655554 5555544322 34666554
No 6
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=97.26 E-value=0.0028 Score=53.24 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=62.5
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc---ccHHHHHHHHHHhhhccceeeEEEecCCCCCcH
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT 80 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~---~dek~L~klaKkLKKnnVavDII~FGe~~~~n~ 80 (332)
|..++++|..++..+|+.|.-.++++..+....+||+|--..-. .+.+.+..+.+++++.+|.|.+|.||.. .+.
T Consensus 66 l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~--~~~ 143 (170)
T cd01465 66 IDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDN--YNE 143 (170)
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCC--cCH
Confidence 44567788899999999999989876554444667777444322 2356788888999999999999999943 577
Q ss_pred HHHHHHHH
Q 020031 81 EKLEALLA 88 (332)
Q Consensus 81 ~kL~~fi~ 88 (332)
..|+.|..
T Consensus 144 ~~l~~ia~ 151 (170)
T cd01465 144 DLMEAIAD 151 (170)
T ss_pred HHHHHHHh
Confidence 88888775
No 7
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=96.81 E-value=0.013 Score=48.12 Aligned_cols=94 Identities=26% Similarity=0.357 Sum_probs=63.7
Q ss_pred cCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 9 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
.+|..++..||+-|.-.|.... .+.|+|+||..--.. .....+++.|++.+|.|.+|.||... ...+.|+.+.+
T Consensus 76 ~~~~t~~~~al~~a~~~~~~~~---~~~~~iv~iTDG~~~--~~~~~~~~~~~~~~i~i~~v~~~~~~-~~~~~l~~la~ 149 (172)
T PF13519_consen 76 PGGGTNLYDALQEAAKMLASSD---NRRRAIVLITDGEDN--SSDIEAAKALKQQGITIYTVGIGSDS-DANEFLQRLAE 149 (172)
T ss_dssp -SSS--HHHHHHHHHHHHHC-S---SEEEEEEEEES-TTH--CHHHHHHHHHHCTTEEEEEEEES-TT--EHHHHHHHHH
T ss_pred CccCCcHHHHHHHHHHHHHhCC---CCceEEEEecCCCCC--cchhHHHHHHHHcCCeEEEEEECCCc-cHHHHHHHHHH
Confidence 4678899999988887776553 677888888775332 44446999999999999999999988 44577888877
Q ss_pred HHhcCCCceEEEeCCCCchhhHHh
Q 020031 89 AVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 89 ~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
.. +-+++.+-..+.-|.+++
T Consensus 150 ~t----gG~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 150 AT----GGRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp HT----EEEEEEE-SSSHHHHHHH
T ss_pred hc----CCEEEEecCCHHHHHHHH
Confidence 65 356777733334466654
No 8
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.72 E-value=0.0057 Score=55.16 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=57.5
Q ss_pred CccccHHHHHHHHHHHhhhcCCccccceEEEEec--CCCc---ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 10 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVG--SPIK---HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVG--SPi~---~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.+..+|..+|.+|.-.|+++..+..++|||+|-- +|.. .+..++.++++.|++.+|.|.+|.+|...
T Consensus 103 ~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 103 SGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 3578999999999999999766677899999987 7764 34677899999999999999999998866
No 9
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=96.65 E-value=0.011 Score=46.94 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=60.6
Q ss_pred cCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 9 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
.+|..++..+++-|.-.+.++..+..+.+||+|...+.......+....++++.++|.|.+|.+|+. .+.+.|..+..
T Consensus 76 ~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~~--~~~~~l~~l~~ 153 (161)
T cd00198 76 LGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGDD--ANEDELKEIAD 153 (161)
T ss_pred CCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCCC--CCHHHHHHHhc
Confidence 6788999999999988888876555566666666665544445788889999999999999999982 45666776655
Q ss_pred HH
Q 020031 89 AV 90 (332)
Q Consensus 89 ~v 90 (332)
.-
T Consensus 154 ~~ 155 (161)
T cd00198 154 KT 155 (161)
T ss_pred cc
Confidence 43
No 10
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=95.79 E-value=0.05 Score=50.77 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc---------cc----------------HHHHHHHHHHhhhccce
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---------HE----------------KKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~---------~d----------------ek~L~klaKkLKKnnVa 66 (332)
..-|-.||++|..+|||+- =|||+|.++|-. ++ .+-..+||.++.+++|+
T Consensus 114 ~~c~G~Al~~A~~lL~~~G-----GkIi~f~s~~pt~GpG~l~~~~~~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~is 188 (244)
T cd01479 114 ESALGPALQAAFLLLKETG-----GKIIVFQSSLPTLGAGKLKSREDPKLLSTDKEKQLLQPQTDFYKKLALECVKSQIS 188 (244)
T ss_pred cccHHHHHHHHHHHHHhcC-----CEEEEEeCCCCCcCCcccccCccccccCchhhhhhcCcchHHHHHHHHHHHHcCeE
Confidence 3558899999999999654 589999999732 11 13457899999999999
Q ss_pred eeEEEecCCCCCcHHHHHHHHHHH
Q 020031 67 LDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 67 vDII~FGe~~~~n~~kL~~fi~~v 90 (332)
|||..+.... -...-|..+...-
T Consensus 189 vDlF~~~~~~-~dla~l~~l~~~T 211 (244)
T cd01479 189 VDLFLFSNQY-VDVATLGCLSRLT 211 (244)
T ss_pred EEEEEccCcc-cChhhhhhhhhhc
Confidence 9999998655 4455566665544
No 11
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=95.67 E-value=0.047 Score=47.33 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=58.5
Q ss_pred ccCccccHHHHHHHHHHHhhhc-CC-ccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHR-QN-KKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 84 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHR-qn-K~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~ 84 (332)
..+|..++..||..|.=.|.++ .. +..++.||+|- |.| .+...-...+++||+++|.|-+|.||... |.+.|.
T Consensus 80 ~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~--~~~~~~~~~a~~l~~~gv~v~~igiG~~~--d~~~l~ 155 (186)
T cd01471 80 YPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIP--DSKFRTLKEARKLRERGVIIAVLGVGQGV--NHEENR 155 (186)
T ss_pred CCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCC--CCCcchhHHHHHHHHCCCEEEEEEeehhh--CHHHHH
Confidence 4678899999999987666652 22 23344555554 333 22233447889999999999999999754 566666
Q ss_pred HHHHHHhcCCCceEEEeCCC
Q 020031 85 ALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 85 ~fi~~vN~~~~Shlv~VP~G 104 (332)
.|...--+.+-|+.+..-+-
T Consensus 156 ~ia~~~~~~~~~~~~~~~~~ 175 (186)
T cd01471 156 SLVGCDPDDSPCPLYLQSSW 175 (186)
T ss_pred HhcCCCCCCCCCCeeecCCH
Confidence 55433212334666655443
No 12
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=95.45 E-value=0.074 Score=43.87 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=55.3
Q ss_pred cCccccHHHHHHHHHHHhhhcCC---ccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHH
Q 020031 9 IGGELNLAAGIQVAQLALKHRQN---KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 85 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqn---K~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~ 85 (332)
.+|..++..+|.-|...++++.+ .+.++.||+|--.. ..+........+++++++|.|.+|.||... +...|..
T Consensus 77 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~-~~~~~~~~~~~~~~~~~~i~i~~i~~~~~~--~~~~l~~ 153 (177)
T smart00327 77 LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGE-SNDGGDLLKAAKELKRSGVKVFVVGVGNDV--DEEELKK 153 (177)
T ss_pred CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCC-CCCCccHHHHHHHHHHCCCEEEEEEccCcc--CHHHHHH
Confidence 47889999999999999874432 22244555554222 222257888899999999999999999653 5677777
Q ss_pred HHHHH
Q 020031 86 LLAAV 90 (332)
Q Consensus 86 fi~~v 90 (332)
|-...
T Consensus 154 ~~~~~ 158 (177)
T smart00327 154 LASAP 158 (177)
T ss_pred HhCCC
Confidence 76655
No 13
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=95.42 E-value=0.064 Score=49.41 Aligned_cols=75 Identities=27% Similarity=0.335 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-------------------------ccHHHHHHHHHHhhhccce
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-------------------------HEKKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-------------------------~dek~L~klaKkLKKnnVa 66 (332)
..-|-.||++|...|+++- .-=||++|.++|-. ...+-..+||.++-+++|+
T Consensus 115 ~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~GpG~l~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~is 191 (239)
T cd01468 115 ERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTVGPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGIC 191 (239)
T ss_pred cccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCCCCCccccCcccccCCCccchhcccccHHHHHHHHHHHHHcCeE
Confidence 3557889999999999994 46799999998874 1124558899999999999
Q ss_pred eeEEEecCCCCCcHHHHHHHHHHH
Q 020031 67 LDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 67 vDII~FGe~~~~n~~kL~~fi~~v 90 (332)
|||..++... -...-|..+...-
T Consensus 192 vdlF~~~~~~-~dl~~l~~l~~~T 214 (239)
T cd01468 192 VDLFAFSLDY-VDVATLKQLAKST 214 (239)
T ss_pred EEEEeccccc-cCHHHhhhhhhcC
Confidence 9999999765 4556666665543
No 14
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=95.29 E-value=0.06 Score=49.42 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc--c-------------------------cHHHHHHHHHHhhhcc
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--H-------------------------EKKVLEMIGRKLKKNS 64 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~--~-------------------------dek~L~klaKkLKKnn 64 (332)
..-|..||++|...|+.+. .-=||++|.++|-. . ..+-..+||+++-+++
T Consensus 115 ~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~ 191 (243)
T PF04811_consen 115 ERCLGSALSAALSLLSSRN---TGGKILVFTSGPPTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQG 191 (243)
T ss_dssp ---HHHHHHHHHHHHHHHT---S-EEEEEEESS---SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHhccc---cCCEEEEEeccCCCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcC
Confidence 4568899999999999444 45699999999852 1 1124689999999999
Q ss_pred ceeeEEEecCCCCCcHHHHHHHHHH
Q 020031 65 VALDIVNFGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 65 VavDII~FGe~~~~n~~kL~~fi~~ 89 (332)
|+|||+.|+... -...-|..+...
T Consensus 192 isvDlf~~~~~~-~~l~tl~~l~~~ 215 (243)
T PF04811_consen 192 ISVDLFVFSSDY-VDLATLGPLARY 215 (243)
T ss_dssp EEEEEEEECSS---SHHHHTHHHHC
T ss_pred CEEEEEeecCCC-CCcHhHHHHHHh
Confidence 999999999876 556666666553
No 15
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.97 E-value=0.0058 Score=36.84 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=12.6
Q ss_pred CCChHHHHHHHHhcccC
Q 020031 248 AEDDPELALALQLSMQD 264 (332)
Q Consensus 248 ~~Eee~ia~AlqmSmq~ 264 (332)
++||++|++||+|||++
T Consensus 1 ~~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 1 MDEDEDLQRALEMSLEE 17 (18)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhhcc
Confidence 35777888888888764
No 16
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=94.62 E-value=0.19 Score=41.11 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=51.8
Q ss_pred ccccHHHHHHHHHHHhhhcCC--ccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 11 GELNLAAGIQVAQLALKHRQN--KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqn--K~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
|..++..||+.|.--+..+.+ ...++.||+|--..-... .+...+.++||+++|.|.+|.+|. . +.+.|+.|-.
T Consensus 78 ~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~-~~~~~~~~~~~~~~v~v~~i~~g~-~--~~~~l~~la~ 153 (161)
T cd01450 78 GGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG-GDPKEAAAKLKDEGIKVFVVGVGP-A--DEEELREIAS 153 (161)
T ss_pred CCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC-cchHHHHHHHHHCCCEEEEEeccc-c--CHHHHHHHhC
Confidence 378999999888887776542 333444444433333322 278999999999999999999998 2 4577777654
Q ss_pred H
Q 020031 89 A 89 (332)
Q Consensus 89 ~ 89 (332)
.
T Consensus 154 ~ 154 (161)
T cd01450 154 C 154 (161)
T ss_pred C
Confidence 3
No 17
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=94.44 E-value=0.18 Score=42.32 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=56.3
Q ss_pred ccccc-CccccHHHHHHHHHHHhhhcCCccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHH
Q 020031 5 AGLEI-GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 82 (332)
Q Consensus 5 H~i~i-~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~k 82 (332)
..+++ .|..++..+|+.|.-.+ ...+....||+|- |.| ...+.++....++.. .+|.|..|.||... +...
T Consensus 69 ~~~~~~~G~t~l~~aL~~a~~~~---~~~~~~~~IilltDG~~-~~~~~~i~~~v~~~~-~~~~i~~~~~g~~~--~~~~ 141 (155)
T PF13768_consen 69 KSLEANSGGTDLLAALRAALALL---QRPGCVRAIILLTDGQP-VSGEEEILDLVRRAR-GHIRIFTFGIGSDA--DADF 141 (155)
T ss_pred HHhcccCCCccHHHHHHHHHHhc---ccCCCccEEEEEEeccC-CCCHHHHHHHHHhcC-CCceEEEEEECChh--HHHH
Confidence 34566 89999999999665444 5556677788887 777 445566667776643 67999999999865 4677
Q ss_pred HHHHHHHH
Q 020031 83 LEALLAAV 90 (332)
Q Consensus 83 L~~fi~~v 90 (332)
|+.+-..-
T Consensus 142 L~~LA~~~ 149 (155)
T PF13768_consen 142 LRELARAT 149 (155)
T ss_pred HHHHHHcC
Confidence 77766544
No 18
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=94.23 E-value=0.03 Score=36.52 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHhcHHHHHHH
Q 020031 150 NLDPELALALRVSMEEERAR 169 (332)
Q Consensus 150 ~~DPELAmALR~SmEEEr~R 169 (332)
+.|++|++||++||+|.+.+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 36899999999999998765
No 19
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.11 E-value=0.027 Score=33.96 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHhcHHH
Q 020031 150 NLDPELALALRVSMEE 165 (332)
Q Consensus 150 ~~DPELAmALR~SmEE 165 (332)
+.|++|++||+|||+|
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 3589999999999987
No 20
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=94.07 E-value=0.34 Score=40.54 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=61.2
Q ss_pred ccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHH
Q 020031 6 GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 85 (332)
Q Consensus 6 ~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~ 85 (332)
.+.++|..++..+|..|.--|+-+ .. +.++|+|+.-=...+..++.+..+++.+.+|.|-.|.||... |.+.|+.
T Consensus 73 ~~~~~g~T~l~~al~~a~~~l~~~--~~-~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~--~~~~l~~ 147 (171)
T cd01461 73 RLQALGGTNMNDALEAALELLNSS--PG-SVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDV--NTYLLER 147 (171)
T ss_pred hcCCCCCcCHHHHHHHHHHhhccC--CC-CccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCcc--CHHHHHH
Confidence 456789999999999987776542 22 345555554434456677888888888889999999999755 4566666
Q ss_pred HHHHHhcCCCceEEEeCCC
Q 020031 86 LLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 86 fi~~vN~~~~Shlv~VP~G 104 (332)
+-+.- +..++.|+..
T Consensus 148 ia~~~----gG~~~~~~~~ 162 (171)
T cd01461 148 LAREG----RGIARRIYET 162 (171)
T ss_pred HHHcC----CCeEEEecCh
Confidence 65543 3445555543
No 21
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=93.90 E-value=0.55 Score=44.04 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=52.5
Q ss_pred CccccHHHHHHHHHHHhhhcCCc--cccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC----------
Q 020031 10 GGELNLAAGIQVAQLALKHRQNK--KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE---------- 77 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK--~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~---------- 77 (332)
+|..++..||..|.+-+..+..+ ..++.||+|--.--......+..+.++|+++||.|-.|.||....
T Consensus 138 ~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~ 217 (296)
T TIGR03436 138 GGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAG 217 (296)
T ss_pred CCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccC
Confidence 78889999987775433222211 134455555533212345578889999999999999999986421
Q ss_pred -CcHHHHHHHHHHH
Q 020031 78 -GNTEKLEALLAAV 90 (332)
Q Consensus 78 -~n~~kL~~fi~~v 90 (332)
.+.+.|+.|.+.-
T Consensus 218 ~~~~~~L~~iA~~T 231 (296)
T TIGR03436 218 LGGPEALERLAEET 231 (296)
T ss_pred CCcHHHHHHHHHHh
Confidence 1356788777766
No 22
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=93.87 E-value=0.23 Score=42.35 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=56.8
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHH
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 82 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~k 82 (332)
+..+.++|...+..||+.|.=.|+++..++..++||++- |-|-.. ....++++.+|.|-+|.||... +.+.
T Consensus 68 i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~------~~~~~~~~~~v~v~~igig~~~--~~~~ 139 (155)
T cd01466 68 VDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHG------AVVLRADNAPIPIHTFGLGASH--DPAL 139 (155)
T ss_pred HHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcc------hhhhcccCCCceEEEEecCCCC--CHHH
Confidence 445678999999999999987787665555556666655 323111 1123456789999999999754 5566
Q ss_pred HHHHHHHHhcCCCceEE
Q 020031 83 LEALLAAVNNNDSSHLV 99 (332)
Q Consensus 83 L~~fi~~vN~~~~Shlv 99 (332)
|+.+-+.- ++..|+|
T Consensus 140 l~~iA~~t--~G~~~~~ 154 (155)
T cd01466 140 LAFIAEIT--GGTFSYV 154 (155)
T ss_pred HHHHHhcc--CceEEEe
Confidence 77755533 3555555
No 23
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=93.63 E-value=0.39 Score=45.89 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=56.7
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc--------------------c----------HHHHHHHHHHhh
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH--------------------E----------KKVLEMIGRKLK 61 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~--------------------d----------ek~L~klaKkLK 61 (332)
..-+-.||++|.++|++.- ++.-=||++|+++|-.. + .+--.+||+++-
T Consensus 140 ~r~~G~Al~~A~~ll~~~~-~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~ 218 (267)
T cd01478 140 LRCTGVALSIAVGLLEACF-PNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLA 218 (267)
T ss_pred CCchHHHHHHHHHHHHhhc-CCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 3558889999999999663 44568999999998630 0 123357999999
Q ss_pred hccceeeEEEecCCCCCcHHHHHHHHHH
Q 020031 62 KNSVALDIVNFGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 62 KnnVavDII~FGe~~~~n~~kL~~fi~~ 89 (332)
+++|+|||..+.-.. --..-|..+++.
T Consensus 219 ~~~vsvDlF~~s~d~-vglaem~~l~~~ 245 (267)
T cd01478 219 ANGHAVDIFAGCLDQ-VGLLEMKVLVNS 245 (267)
T ss_pred hCCeEEEEEeccccc-cCHHHHHHHHHh
Confidence 999999999998765 445566666653
No 24
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=93.26 E-value=0.54 Score=40.96 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=58.9
Q ss_pred cccccCccccHHHHHHHHHHHhhhcCCc-cccceEEEEe-cCCCc--ccHHHH-HHHHHHhhhccceeeEEEecCCCCCc
Q 020031 5 AGLEIGGELNLAAGIQVAQLALKHRQNK-KQQQRIIVFV-GSPIK--HEKKVL-EMIGRKLKKNSVALDIVNFGEDDEGN 79 (332)
Q Consensus 5 H~i~i~G~~~~~~gIqiA~LALKHRqnK-~~~qRIIvFV-GSPi~--~dek~L-~klaKkLKKnnVavDII~FGe~~~~n 79 (332)
..+.++|...+..||+-|.-.|+.+..+ ..+++||++- |-+-. ...... ..++++|++.+|.|.+|.+|... .+
T Consensus 68 ~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~-~~ 146 (178)
T cd01451 68 ARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRP-VR 146 (178)
T ss_pred HhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCc-cC
Confidence 3456789899999999888666322211 2234444443 22221 122333 78899999999999999998764 45
Q ss_pred HHHHHHHHHHHhcCCCceEEEeCC
Q 020031 80 TEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 80 ~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
...|+.+-+.- +-+++.++.
T Consensus 147 ~~~l~~iA~~t----gG~~~~~~d 166 (178)
T cd01451 147 RGLAKDLARAL----GGQYVRLPD 166 (178)
T ss_pred ccHHHHHHHHc----CCeEEEcCc
Confidence 66777765544 345555544
No 25
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=93.16 E-value=0.52 Score=41.42 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=50.2
Q ss_pred Ccccc-cCccccHHHHHHHHHHHhhhcCCccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 4 DAGLE-IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 4 lH~i~-i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
|+.++ .+|...+..||+.|.-.+........++.||+|- |-+-..+...+.+.++.||+.+|.|=.|.+|.
T Consensus 78 i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 78 VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 45554 5788899999999987777522233344455554 43322345578888999999999999999998
No 26
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=93.01 E-value=0.45 Score=50.65 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=60.7
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHH
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 86 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~f 86 (332)
+..+|..++..||.-|.--|++|-++....++||++--=...+..+....+++||+.+|.|=+|-+|... |.+.|+.+
T Consensus 121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g~--n~e~LrlI 198 (576)
T PTZ00441 121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQGI--NHQFNRLL 198 (576)
T ss_pred ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCCc--CHHHHHHH
Confidence 3567889999999988777877655555556555552222223345667889999999988888888754 54545443
Q ss_pred HHHHh-cCCCceEEEeCC
Q 020031 87 LAAVN-NNDSSHLVHVPP 103 (332)
Q Consensus 87 i~~vN-~~~~Shlv~VP~ 103 (332)
. ... +.++|+++.+..
T Consensus 199 A-gC~p~~g~c~~Y~vad 215 (576)
T PTZ00441 199 A-GCRPREGKCKFYSDAD 215 (576)
T ss_pred h-ccCCCCCCCceEEeCC
Confidence 2 222 224577777644
No 27
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=92.87 E-value=2.4 Score=37.01 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=44.5
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCC
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND 94 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~ 94 (332)
.....+|+|+|..... .-+.+++..++|++.+..+.++.+|... ....++.+++..+..+
T Consensus 186 ~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~ 246 (353)
T cd03811 186 PPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP--LREELEALAKELGLAD 246 (353)
T ss_pred CCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc--cHHHHHHHHHhcCCCc
Confidence 3566889999987643 5677899999999987778888888655 3466777777775433
No 28
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=92.82 E-value=1.2 Score=38.06 Aligned_cols=86 Identities=12% Similarity=0.255 Sum_probs=49.9
Q ss_pred cCccccHHHHHHHHHH-HhhhcC-CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHH
Q 020031 9 IGGELNLAAGIQVAQL-ALKHRQ-NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 86 (332)
Q Consensus 9 i~G~~~~~~gIqiA~L-ALKHRq-nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~f 86 (332)
.+|..++..||..|.- .++-.. .+...+|+|+++---... ..+...+++||+.+|.|-+|-+|+. +.+.|+.+
T Consensus 75 ~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~--~~~~~~a~~lk~~gi~i~~ig~g~~---~~~~L~~i 149 (164)
T cd01482 75 KGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQ--DDVELPARVLRNLGVNVFAVGVKDA---DESELKMI 149 (164)
T ss_pred CCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCC--chHHHHHHHHHHCCCEEEEEecCcC---CHHHHHHH
Confidence 5788899999986653 333111 122234444444222222 3567889999999998777777653 34444444
Q ss_pred HHHHhcCCCceEEEeC
Q 020031 87 LAAVNNNDSSHLVHVP 102 (332)
Q Consensus 87 i~~vN~~~~Shlv~VP 102 (332)
.. .....|+..|+
T Consensus 150 a~---~~~~~~~~~~~ 162 (164)
T cd01482 150 AS---KPSETHVFNVA 162 (164)
T ss_pred hC---CCchheEEEcC
Confidence 32 23456887764
No 29
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=92.46 E-value=0.81 Score=39.98 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=55.1
Q ss_pred ccCccccHHHHHHHHHHHh-h----hcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC--CcH
Q 020031 8 EIGGELNLAAGIQVAQLAL-K----HRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNT 80 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LAL-K----HRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~--~n~ 80 (332)
..+|..++..||..|.=-| . +|. + ..|||+++--=...+.......++.||++||.|-.|.+|.... .+.
T Consensus 74 ~~~g~T~~~~AL~~a~~~l~~~~~g~R~--~-~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~ 150 (177)
T cd01469 74 QLLGLTNTATAIQYVVTELFSESNGARK--D-ATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHFQRENSR 150 (177)
T ss_pred cCCCCccHHHHHHHHHHHhcCcccCCCC--C-CCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccccccccH
Confidence 3577899999998875333 1 233 2 3444444432222223333667888999999999999998651 123
Q ss_pred HHHHHHHHHHhcCCCceEEEeCCC
Q 020031 81 EKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 81 ~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
+.|..+ +......|+..+..-
T Consensus 151 ~~L~~i---as~p~~~h~f~~~~~ 171 (177)
T cd01469 151 EELKTI---ASKPPEEHFFNVTDF 171 (177)
T ss_pred HHHHHH---hcCCcHHhEEEecCH
Confidence 444443 333445899988653
No 30
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=92.45 E-value=0.058 Score=35.23 Aligned_cols=20 Identities=40% Similarity=0.745 Sum_probs=15.6
Q ss_pred CChHHHHHHHHhcccCCCCC
Q 020031 249 EDDPELALALQLSMQDGTKD 268 (332)
Q Consensus 249 ~Eee~ia~AlqmSmq~~~~~ 268 (332)
+||++|++||+||+++.+..
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 47889999999999876543
No 31
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=91.43 E-value=0.82 Score=39.96 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=55.5
Q ss_pred CcccccCccccHHHHHHHHHHHh--hhcCCccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcH
Q 020031 4 DAGLEIGGELNLAAGIQVAQLAL--KHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT 80 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LAL--KHRqnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~ 80 (332)
|..+..+|..++..||+.|.--| +++..+...+.||+|- |.+...........++.||+++|.|-.|.+|. -|.
T Consensus 71 l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv~~---~~~ 147 (185)
T cd01474 71 LKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTD---FLK 147 (185)
T ss_pred HhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEeech---hhH
Confidence 34556688899999999987444 2333333334455554 55532223345567889999999877777743 344
Q ss_pred HHHHHHHHHHhcCCCceEEEeCCC
Q 020031 81 EKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 81 ~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
..|+.+.. . ..|+..+-..
T Consensus 148 ~~L~~iA~----~-~~~~f~~~~~ 166 (185)
T cd01474 148 SQLINIAD----S-KEYVFPVTSG 166 (185)
T ss_pred HHHHHHhC----C-CCeeEecCcc
Confidence 45555442 2 3577755443
No 32
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.39 E-value=1.6 Score=42.63 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=61.4
Q ss_pred ccccHHHHHHHHHHHhhhcCC------ccccceEEEEecCCCccc-HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHH
Q 020031 11 GELNLAAGIQVAQLALKHRQN------KKQQQRIIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 83 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqn------K~~~qRIIvFVGSPi~~d-ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL 83 (332)
++..+..||-.| |..=+|.. ...+-||++|-+||-... =--+-.....+||.||.||||..+.+. ....|
T Consensus 117 ~~s~lagals~A-Lcyinr~~~~~~~~~~~~~RIlii~~s~~~~~qYi~~mn~Ifaaqk~~I~Idv~~L~~e~--~~~~l 193 (279)
T TIGR00627 117 SRTVLAGALSDA-LGYINRSEQSETASEKLKSRILVISITPDMALQYIPLMNCIFSAQKQNIPIDVVSIGGDF--TSGFL 193 (279)
T ss_pred ccccchhHHHhh-hhhhcccccccccCcCCcceEEEEECCCCchHHHHHHHHHHHHHHHcCceEEEEEeCCcc--ccHHH
Confidence 455566666533 22223432 356899999999985432 234458899999999999999997541 25788
Q ss_pred HHHHHHHhcCCCceEEEeCCCCchhhHHhhh
Q 020031 84 EALLAAVNNNDSSHLVHVPPGPNALSDVLLS 114 (332)
Q Consensus 84 ~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~s 114 (332)
+...+..|+ . +..++-.. -|.+.|+.
T Consensus 194 qQa~~~TgG---~-Y~~~~~~~-~L~q~L~~ 219 (279)
T TIGR00627 194 QQAADITGG---S-YLHVKKPQ-GLLQYLMT 219 (279)
T ss_pred HHHHHHhCC---E-EeccCCHh-HHHHHHHH
Confidence 888887754 2 22233222 26666665
No 33
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=91.34 E-value=0.3 Score=43.86 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=44.6
Q ss_pred CccccHHHHHHHHHHHhhh--cCCccccceEEEEe--cCCCcccHHHHHHHHH-----HhhhccceeeEEEe
Q 020031 10 GGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFV--GSPIKHEKKVLEMIGR-----KLKKNSVALDIVNF 72 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKH--RqnK~~~qRIIvFV--GSPi~~dek~L~klaK-----kLKKnnVavDII~F 72 (332)
....+|..+|.+|.-.|++ ...|..++|||+|- .+|+. +..++.++.+ -|+.++|.++++-.
T Consensus 102 ~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 102 SDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHE-DDDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp SS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT--CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred CCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCC-CHHHHHHHHHhhccccchhcCcceeEeec
Confidence 3468899999999999987 45666788888886 67775 4444555544 49999999999988
No 34
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.32 E-value=9.3 Score=34.82 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=48.1
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCC-CceEEEeCCCCchhhHH
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND-SSHLVHVPPGPNALSDV 111 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~-~Shlv~VP~G~~~LsD~ 111 (332)
...++|+|+|.--.. .-..|+++.++|++.+..+.++.+|... ......+.+.+.+...+ ..++..++. ..-+.+.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~-~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~ 260 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ-GRRFYYAELLELIKRLGLQDRVTFVGH-CSDMPAA 260 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc-ccchHHHHHHHHHHHcCCcceEEEcCC-cccHHHH
Confidence 456789999974432 5677999999999977778888888765 32222222223333222 223333333 2235666
Q ss_pred hhhcCcc
Q 020031 112 LLSTPIF 118 (332)
Q Consensus 112 l~sSpI~ 118 (332)
+..+-++
T Consensus 261 l~~ad~~ 267 (355)
T cd03819 261 YALADIV 267 (355)
T ss_pred HHhCCEE
Confidence 6655554
No 35
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=91.08 E-value=1.5 Score=37.25 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=53.0
Q ss_pred cccc-CccccHHHHHHHHHHHhhhc---CCccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcH
Q 020031 6 GLEI-GGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNT 80 (332)
Q Consensus 6 ~i~i-~G~~~~~~gIqiA~LALKHR---qnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~ 80 (332)
.+.. +|..++..||..|.-.|..+ ..++.++-||+|- |.|- ..+...+..|++.+|.|-.|-+|.. +.
T Consensus 71 ~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~----~~~~~~~~~l~~~gv~i~~ig~g~~---~~ 143 (164)
T cd01472 71 NLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQ----DDVEEPAVELKQAGIEVFAVGVKNA---DE 143 (164)
T ss_pred hCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCC----chHHHHHHHHHHCCCEEEEEECCcC---CH
Confidence 3443 67789999999998877763 2233343444443 3222 2345567788888988777777754 56
Q ss_pred HHHHHHHHHHhcCCCceEEEe
Q 020031 81 EKLEALLAAVNNNDSSHLVHV 101 (332)
Q Consensus 81 ~kL~~fi~~vN~~~~Shlv~V 101 (332)
..|+.+.. .+.+.|...+
T Consensus 144 ~~L~~ia~---~~~~~~~~~~ 161 (164)
T cd01472 144 EELKQIAS---DPKELYVFNV 161 (164)
T ss_pred HHHHHHHC---CCchheEEec
Confidence 77776543 2345666544
No 36
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=90.15 E-value=1.3 Score=37.15 Aligned_cols=59 Identities=17% Similarity=0.414 Sum_probs=45.4
Q ss_pred ceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEEecCCC-----------CCcHHHHHHHHHHHhcCC
Q 020031 36 QRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVNFGEDD-----------EGNTEKLEALLAAVNNND 94 (332)
Q Consensus 36 qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~FGe~~-----------~~n~~kL~~fi~~vN~~~ 94 (332)
|||++++|||=. .+..-+..+++.|++.++.+++|.+.+.. ....+.++.+++.+...|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD 72 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEAD 72 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSS
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCC
Confidence 699999999964 46777788999999999999999998751 013466778888885444
No 37
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=90.04 E-value=1.4 Score=36.68 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=57.9
Q ss_pred ccCccccHHHHHHHHHHHhhhc---CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHR---QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 84 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHR---qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~ 84 (332)
..+|..++..||+.|.--|.++ .+++.++-||+|...+............+..++ +.|-+|.+|-.. .+.+.|.
T Consensus 74 ~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~--~~i~~~~ig~~~-~~~~~l~ 150 (178)
T PF00092_consen 74 SSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS--NGIKVIAIGIDN-ADNEELR 150 (178)
T ss_dssp CCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH--CTEEEEEEEESC-CHHHHHH
T ss_pred ccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh--cCcEEEEEecCc-CCHHHHH
Confidence 5678899999999999888776 334556667777777766554444444444333 556666666633 5667777
Q ss_pred HHHHHHhcCCCceEEEeCC
Q 020031 85 ALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 85 ~fi~~vN~~~~Shlv~VP~ 103 (332)
.+...- ....|+.+++.
T Consensus 151 ~la~~~--~~~~~~~~~~~ 167 (178)
T PF00092_consen 151 ELASCP--TSEGHVFYLAD 167 (178)
T ss_dssp HHSHSS--TCHHHEEEESS
T ss_pred HHhCCC--CCCCcEEEcCC
Confidence 766421 24468887765
No 38
>PLN00162 transport protein sec23; Provisional
Probab=89.63 E-value=1.4 Score=48.15 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc---------c-------------c--------HHHHHHHHHHhhh
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---------H-------------E--------KKVLEMIGRKLKK 62 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~---------~-------------d--------ek~L~klaKkLKK 62 (332)
--+-.||++|...|+..- ++.--||++|+|+|.. + + .+--.+||+++-+
T Consensus 262 r~tG~AL~vA~~lL~~~~-~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~ 340 (761)
T PLN00162 262 RCTGAALSVAAGLLGACV-PGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA 340 (761)
T ss_pred ccHHHHHHHHHHHHhhcc-CCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHH
Confidence 347889999999999764 4558899999999842 0 0 1233679999999
Q ss_pred ccceeeEEEecCCC
Q 020031 63 NSVALDIVNFGEDD 76 (332)
Q Consensus 63 nnVavDII~FGe~~ 76 (332)
++|+|||..|+-..
T Consensus 341 ~gisvDlF~~s~dq 354 (761)
T PLN00162 341 QGHVLDVFACSLDQ 354 (761)
T ss_pred cCceEEEEEccccc
Confidence 99999999998654
No 39
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=89.27 E-value=1.4 Score=39.11 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=48.6
Q ss_pred Ccccc-cCccccHHHHHHHHHHHhhhcCCccccceEEEEe-cCCCcccHHHHHHHHHHhhh-----ccceeeEEEecCCC
Q 020031 4 DAGLE-IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKK-----NSVALDIVNFGEDD 76 (332)
Q Consensus 4 lH~i~-i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKK-----nnVavDII~FGe~~ 76 (332)
|..+. .+|..++..||..|.=.|+ .....+||+|- |.+-... .-...++.+.+ .+|.|.+|-||...
T Consensus 107 i~~i~~~~G~T~l~~aL~~a~~~l~----~~~~~~iillTDG~~~~~~--~~~~~~~~~~~~~~~~~~i~i~~igiG~~~ 180 (206)
T cd01456 107 LNSLQTPTGWTPLAAALAEAAAYVD----PGRVNVVVLITDGEDTCGP--DPCEVARELAKRRTPAPPIKVNVIDFGGDA 180 (206)
T ss_pred HHhhcCCCCcChHHHHHHHHHHHhC----CCCcceEEEEcCCCccCCC--CHHHHHHHHHHhcCCCCCceEEEEEecCcc
Confidence 34456 7889999999998876664 11124566655 3332221 22234444444 48999999999764
Q ss_pred CCcHHHHHHHHHHH
Q 020031 77 EGNTEKLEALLAAV 90 (332)
Q Consensus 77 ~~n~~kL~~fi~~v 90 (332)
+...|+.+-..-
T Consensus 181 --~~~~l~~iA~~t 192 (206)
T cd01456 181 --DRAELEAIAEAT 192 (206)
T ss_pred --cHHHHHHHHHhc
Confidence 456666665544
No 40
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=89.01 E-value=2.2 Score=38.67 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=49.2
Q ss_pred cCccccHHHHHHHHHHHhhh--cCCccccceEEEEecCC-CcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHH
Q 020031 9 IGGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGSP-IKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 85 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKH--RqnK~~~qRIIvFVGSP-i~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~ 85 (332)
.+|..++.+||+.|.=.|+. |-.+....|+|+++-.- -..........|++||+++|.|-.|-+|... ....|+.
T Consensus 103 ~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~~--d~~~~~~ 180 (193)
T cd01477 103 STNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQDE--SSNLLDK 180 (193)
T ss_pred cCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCCC--CHHHHHH
Confidence 34567899999988877763 23334467755555321 1111133568899999999999999999865 2344554
No 41
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=88.99 E-value=1.7 Score=37.01 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=41.5
Q ss_pred ccCccccHHHHHHHHHHHhhhcCCccccceEEEEe--cCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 8 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV--GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV--GSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
.++|..++..+|..|.-.|..+. .++++|+++ |-+-. ........++.+++.+|.|..|.||.
T Consensus 78 ~~~g~T~l~~al~~a~~~l~~~~---~~~~~iiliTDG~~~~-g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 78 LAGQGTAIGDAIGLAIKRLKNSE---AKERVIVLLTDGENNA-GEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcC---CCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 35777889999988776665432 234666666 43332 11223345566778899999999997
No 42
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=88.82 E-value=8.8 Score=34.85 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=50.2
Q ss_pred ccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 34 QQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 34 ~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
...++|+|+|+-.. ..-..+++..++|++.+-.+.++.+|... ..+.+++++...+-.++-+| +.+-. -+.+.+
T Consensus 186 ~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~--~g~~~-~~~~~~ 260 (360)
T cd04951 186 NDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--LRATLERLIKALGLSNRVKL--LGLRD-DIAAYY 260 (360)
T ss_pred CCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--cHHHHHHHHHhcCCCCcEEE--ecccc-cHHHHH
Confidence 45689999997554 24567899999988775667778888654 34678888877653333333 22212 244555
Q ss_pred hhcCcc
Q 020031 113 LSTPIF 118 (332)
Q Consensus 113 ~sSpI~ 118 (332)
..+.++
T Consensus 261 ~~ad~~ 266 (360)
T cd04951 261 NAADLF 266 (360)
T ss_pred HhhceE
Confidence 554443
No 43
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=88.79 E-value=3 Score=36.86 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 17 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.|..+|++.+++-. .....||++|+|+= .+=-+=.-+|+.|...++.|.|+.++...
T Consensus 8 Ag~~~a~~i~~~~~-~~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 8 AGRAIAELIRKLFG-SPKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLVGPPE 64 (169)
T ss_dssp HHHHHHHHHHHHST-CCTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhc-ccCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEEeccc
Confidence 47788997777764 66688999999984 56667788999999999999999998866
No 44
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.72 E-value=1 Score=32.36 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=34.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+|-.||+.+.....-+.++-+.|.|++|.||.|+.|-
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 6889999999888889999999999999999998865
No 45
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=87.71 E-value=8.4 Score=34.29 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=44.0
Q ss_pred cccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceE
Q 020031 33 KQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL 98 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shl 98 (332)
.....+|+|+|+--. -.-+.++++.++|++.+-.+.++.+|... ..+.++.+++..+..++-++
T Consensus 199 ~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~ 263 (374)
T cd03817 199 PEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--EREELEELARELGLADRVIF 263 (374)
T ss_pred CCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHHcCCCCcEEE
Confidence 345678899997433 25577899999999877778888888654 34667777766543333333
No 46
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=87.65 E-value=2.6 Score=37.41 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=43.3
Q ss_pred ccccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 32 KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
...++.+|+|+|.--.. .-..|++..++|++....+.++.+|.........++.++...+.
T Consensus 199 ~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~ 260 (375)
T cd03821 199 ILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGL 260 (375)
T ss_pred CCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCc
Confidence 44567889999975432 55678899999999777778888887653455666666555543
No 47
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=87.53 E-value=5.6 Score=35.74 Aligned_cols=136 Identities=19% Similarity=0.165 Sum_probs=70.1
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
...++|+|+|+--.. .-..+++..+++++.+..+.++.+|... .........++..+..++-|++---+.. -|.+.+
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~~~ 270 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRG-WLNEELLARLRELGLGDRVRFLGYVSDE-ELAALY 270 (365)
T ss_pred CCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCc-cccHHHHHHHHHcCCCCeEEECCCCChh-HHHHHH
Confidence 356789999986543 5678899999999988778888889766 3334444444334323333332111222 234444
Q ss_pred hhcCccc----CCCCCCCchhHhHHhh-----hcCCC----CCCcccCCCCCCHHHHHHHHhcHHHHHHHHH
Q 020031 113 LSTPIFT----GDGEGGSGFAAAAAAA-----AASGA----SGYEFGVDPNLDPELALALRVSMEEERARQE 171 (332)
Q Consensus 113 ~sSpI~~----ge~~~g~~~~~~~~~~-----~~~~~----~~fefGvDP~~DPELAmALR~SmEEEr~RQe 171 (332)
..+-|+. .|+.+..-+.+...|- ..++- +...+.++++..-+|+-+|+.=+.....|+.
T Consensus 271 ~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 342 (365)
T cd03809 271 RGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGDAALYFDPLDPEALAAAIERLLEDPALREE 342 (365)
T ss_pred hhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceecCceeeeCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 3333321 2332211111111110 00110 1123357888777898888775544444433
No 48
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=87.18 E-value=5.8 Score=33.10 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=45.7
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|..+.++|..++..+|..+.--+++.. .+.++|+|+.-=.. .....+.+.++..++.+|-|-+|.+|...
T Consensus 66 l~~~~~~ggT~l~~al~~a~~~l~~~~---~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 136 (152)
T cd01462 66 LSGVQLGGGTDINKALRYALELIERRD---PRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDHG 136 (152)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHHHhcC---CCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCCC
Confidence 345678899999999998876665431 12345555543322 22334446666667778999999999966
No 49
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=87.06 E-value=4.3 Score=34.12 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=46.2
Q ss_pred cccc-cCccccHHHHHHHHHHHhhhc--CCccccceEEEEecCCCcccHHHHHHHHHHhhh-ccceeeEEEecCCCCCcH
Q 020031 5 AGLE-IGGELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGEDDEGNT 80 (332)
Q Consensus 5 H~i~-i~G~~~~~~gIqiA~LALKHR--qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKK-nnVavDII~FGe~~~~n~ 80 (332)
..+. ++|..++..||.-|.=-|..+ ..+..++.||+|.-.--..+ ....++.|++ .+|.|-.|.+|+...-|.
T Consensus 71 ~~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~---~~~~~~~l~~~~~v~v~~vg~g~~~~~~~ 147 (163)
T cd01476 71 DNLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD---PEKQARILRAVPNIETFAVGTGDPGTVDT 147 (163)
T ss_pred HhCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc---hHHHHHHHhhcCCCEEEEEECCCccccCH
Confidence 3444 467789999999887667522 22334445555542211122 3456777887 777777777776532355
Q ss_pred HHHHHH
Q 020031 81 EKLEAL 86 (332)
Q Consensus 81 ~kL~~f 86 (332)
..|..+
T Consensus 148 ~~L~~i 153 (163)
T cd01476 148 EELHSI 153 (163)
T ss_pred HHHHHH
Confidence 555544
No 50
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=86.67 E-value=2.5 Score=35.10 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=58.7
Q ss_pred CccccceEEEEecCCCcc-cHHHHHHHHHHhhhc-cceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchh
Q 020031 31 NKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 108 (332)
Q Consensus 31 nK~~~qRIIvFVGSPi~~-dek~L~klaKkLKKn-nVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~L 108 (332)
+......+|+|+|..-.. .-..|+++.++|+++ +..+.++..|.. .....+..+++..+-.++-|++.-.+ ..-|
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~--~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l 86 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG--EYKKELKNLIEKLNLKENIIFLGYVP-DDEL 86 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC--CHHHHHHHHHHHTTCGTTEEEEESHS-HHHH
T ss_pred CCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc--cccccccccccccccccccccccccc-cccc
Confidence 344577889999987764 678899999999876 777788888833 35677888888876655655554433 2335
Q ss_pred hHHhhhcCcc
Q 020031 109 SDVLLSTPIF 118 (332)
Q Consensus 109 sD~l~sSpI~ 118 (332)
.+.+-.+-|+
T Consensus 87 ~~~~~~~di~ 96 (172)
T PF00534_consen 87 DELYKSSDIF 96 (172)
T ss_dssp HHHHHHTSEE
T ss_pred ccccccceec
Confidence 6666665554
No 51
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=86.13 E-value=6.2 Score=35.73 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=50.6
Q ss_pred CccccHHHHHHHHH-HHhhh----cCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHH
Q 020031 10 GGELNLAAGIQVAQ-LALKH----RQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 84 (332)
Q Consensus 10 ~G~~~~~~gIqiA~-LALKH----RqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~ 84 (332)
+|..+...||..|. .++.. |.......|||+++---.. .+.+...+++||+.+|.|-.|-+|.. +...|.
T Consensus 78 ~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s--~~~~~~~a~~lk~~gv~i~~VgvG~~---~~~~L~ 152 (224)
T cd01475 78 ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRP--QDDVSEVAAKARALGIEMFAVGVGRA---DEEELR 152 (224)
T ss_pred CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCC--cccHHHHHHHHHHCCcEEEEEeCCcC---CHHHHH
Confidence 45556667777775 34432 3332222566555432221 23467789999999999988888863 334444
Q ss_pred HHHHHHhcCCCceEEEeCCC
Q 020031 85 ALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 85 ~fi~~vN~~~~Shlv~VP~G 104 (332)
.+. ......|++.+..-
T Consensus 153 ~ia---s~~~~~~~f~~~~~ 169 (224)
T cd01475 153 EIA---SEPLADHVFYVEDF 169 (224)
T ss_pred HHh---CCCcHhcEEEeCCH
Confidence 432 22234688777653
No 52
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=86.05 E-value=16 Score=33.69 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=40.4
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
....++|+|||+-... .-..|++..++|++.+-.+.++..|... ..+.|+.+++..
T Consensus 185 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~ 241 (367)
T cd05844 185 ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGP--LLAALEALARAL 241 (367)
T ss_pred CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCch--HHHHHHHHHHHc
Confidence 4456789999986543 4567888888888776667788888644 346778887765
No 53
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=85.80 E-value=6.2 Score=35.44 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=54.9
Q ss_pred cCccccHHHHHHHHHHHhhhcCCc-cccce-EEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHH
Q 020031 9 IGGELNLAAGIQVAQLALKHRQNK-KQQQR-IIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 85 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqnK-~~~qR-IIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~ 85 (332)
.+|..++..||+.|.=.+....+. ....| +|+|--..-.. ++..+...++.||+.+|.|=+|-.|... ...|..
T Consensus 81 ~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~---~~el~~ 157 (192)
T cd01473 81 SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAAS---ENKLKL 157 (192)
T ss_pred CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecccc---HHHHHH
Confidence 467788899998775444332222 22244 44554444332 4567889999999999999999999754 344544
Q ss_pred HHHHHhcCCCceEEEeCC
Q 020031 86 LLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 86 fi~~vN~~~~Shlv~VP~ 103 (332)
.-..=-++++|+++....
T Consensus 158 ia~~~~~~~~~~~~~~~~ 175 (192)
T cd01473 158 LAGCDINNDNCPNVIKTE 175 (192)
T ss_pred hcCCCCCCCCCCeEEecc
Confidence 432201234555444333
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=85.56 E-value=6.1 Score=34.45 Aligned_cols=86 Identities=23% Similarity=0.334 Sum_probs=52.2
Q ss_pred CCccccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchh
Q 020031 30 QNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 108 (332)
Q Consensus 30 qnK~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~L 108 (332)
.........|+|+|+.... .-..+++..+.|++.+-.+.++.+|... ....+..++...+..++-+++--.+.. -+
T Consensus 193 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~ 269 (374)
T cd03801 193 LGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP--LREELEALAAELGLGDRVTFLGFVPDE-DL 269 (374)
T ss_pred cCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--HHHHHHHHHHHhCCCcceEEEeccChh-hH
Confidence 3344566789999986543 5578889999999887678888899433 456677766555433333332222212 24
Q ss_pred hHHhhhcCcc
Q 020031 109 SDVLLSTPIF 118 (332)
Q Consensus 109 sD~l~sSpI~ 118 (332)
.+.+-.+-|+
T Consensus 270 ~~~~~~~di~ 279 (374)
T cd03801 270 PALYAAADVF 279 (374)
T ss_pred HHHHHhcCEE
Confidence 4444444443
No 55
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=85.15 E-value=3.6 Score=37.28 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=54.1
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC-CchhhHH
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG-PNALSDV 111 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G-~~~LsD~ 111 (332)
.....|+|+|..-.. .-..|++..++|++.+..+.++.+|... ..+.+..++...+-.++ +..++.- ..-|...
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~--v~~~g~~~~~~l~~~ 252 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGP--LRDELEALIAELGLEDR--VTLLGAKSQEEVREL 252 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCc--cHHHHHHHHHHcCCCCe--EEECCcCChHHHHHH
Confidence 456778999986542 5677899999999987788888888765 45778888888753333 3333322 1235566
Q ss_pred hhhcCcc
Q 020031 112 LLSTPIF 118 (332)
Q Consensus 112 l~sSpI~ 118 (332)
+..+-|+
T Consensus 253 ~~~adi~ 259 (355)
T cd03799 253 LRAADLF 259 (355)
T ss_pred HHhCCEE
Confidence 6555554
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=85.07 E-value=20 Score=31.30 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=40.3
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
....++|+|||+-... .-..|.++.++|++..-.+.++.+|... ....++.++...+
T Consensus 175 ~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~ 232 (348)
T cd03820 175 DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP--EREALEALIKELG 232 (348)
T ss_pred CCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC--CHHHHHHHHHHcC
Confidence 4567889999986543 5677899999998766667778888655 3455666666553
No 57
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=84.95 E-value=6.9 Score=33.80 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=51.7
Q ss_pred ccccCccccHHHHHHHHHHHhhhcCC------ccccceEEEEe--cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC
Q 020031 6 GLEIGGELNLAAGIQVAQLALKHRQN------KKQQQRIIVFV--GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE 77 (332)
Q Consensus 6 ~i~i~G~~~~~~gIqiA~LALKHRqn------K~~~qRIIvFV--GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~ 77 (332)
.+..+|..++..||+-|.=.|+.+.. +....++|+++ |-|-. +........+.+++.+|.|-.|-+|..
T Consensus 72 ~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~~~~i~~igiG~~-- 148 (176)
T cd01464 72 RLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD-DLTAAIERIKEARDSKGRIVACAVGPK-- 148 (176)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc-hHHHHHHHHHhhcccCCcEEEEEeccc--
Confidence 45678999999999998877765432 12223344444 55532 223344667777888888888888874
Q ss_pred CcHHHHHHHHH
Q 020031 78 GNTEKLEALLA 88 (332)
Q Consensus 78 ~n~~kL~~fi~ 88 (332)
.|.+-|+.+-+
T Consensus 149 ~~~~~L~~ia~ 159 (176)
T cd01464 149 ADLDTLKQITE 159 (176)
T ss_pred cCHHHHHHHHC
Confidence 46777776653
No 58
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=84.64 E-value=6.1 Score=35.07 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=54.4
Q ss_pred ccccCccccHHHHHHHHHHHhhhc--CCc-cccceEEEEecCCCccc----HHHHHHHHHHhhhc-cceeeEEEecCCCC
Q 020031 6 GLEIGGELNLAAGIQVAQLALKHR--QNK-KQQQRIIVFVGSPIKHE----KKVLEMIGRKLKKN-SVALDIVNFGEDDE 77 (332)
Q Consensus 6 ~i~i~G~~~~~~gIqiA~LALKHR--qnK-~~~qRIIvFVGSPi~~d----ek~L~klaKkLKKn-nVavDII~FGe~~~ 77 (332)
.+.+.|..++..+|+-|...+..| .+. +.+.++|+||--=...+ ++.|++.+++|++. .|.+-+|.+|...
T Consensus 75 ~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~- 153 (199)
T cd01457 75 ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDP- 153 (199)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcH-
Confidence 455678899999999875433333 222 22356666653322222 44557777777664 7999999999875
Q ss_pred CcHHHHHHHHHHHh
Q 020031 78 GNTEKLEALLAAVN 91 (332)
Q Consensus 78 ~n~~kL~~fi~~vN 91 (332)
.....|+.|-+..+
T Consensus 154 ~~~~~L~~ld~~~~ 167 (199)
T cd01457 154 AATAFLKALDDQLQ 167 (199)
T ss_pred HHHHHHHHHhHHHH
Confidence 56666777766543
No 59
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=83.74 E-value=5.7 Score=34.18 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=48.9
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEe--cCCCcc--------cHHHHHHHHHHhhhccceeeEEEec
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV--GSPIKH--------EKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV--GSPi~~--------dek~L~klaKkLKKnnVavDII~FG 73 (332)
|..+.++|..++..||+.|.--|+.|. .+.|+|+++ |-|-.. .-++..+.++.+++.+|.|-.|-+|
T Consensus 75 l~~~~~~g~T~~~~al~~a~~~l~~~~---~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig 151 (174)
T cd01454 75 LAALSPGGNTRDGAAIRHAAERLLARP---EKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITID 151 (174)
T ss_pred HHccCCCCCCcHHHHHHHHHHHHhcCC---CcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEec
Confidence 345677888899999998877776543 235555554 555432 1233444589999999999999999
Q ss_pred CCC
Q 020031 74 EDD 76 (332)
Q Consensus 74 e~~ 76 (332)
...
T Consensus 152 ~~~ 154 (174)
T cd01454 152 RDA 154 (174)
T ss_pred Ccc
Confidence 876
No 60
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=83.71 E-value=33 Score=31.64 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=51.3
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
...++|+|+|.-... .-..|++..++|++. ..+.++.+|... +.+.|+.++...+-.++-+ .+..-+. +.+.+
T Consensus 195 ~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~--~~g~~~~-~~~~~ 268 (371)
T cd04962 195 EGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGP--ERSPAERLARELGLQDDVL--FLGKQDH-VEELL 268 (371)
T ss_pred CCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCCc--CHHHHHHHHHHcCCCceEE--EecCccc-HHHHH
Confidence 346789999986653 567788888888765 557788889765 4577888887764333333 3333333 56666
Q ss_pred hhcCcc
Q 020031 113 LSTPIF 118 (332)
Q Consensus 113 ~sSpI~ 118 (332)
..+-++
T Consensus 269 ~~~d~~ 274 (371)
T cd04962 269 SIADLF 274 (371)
T ss_pred HhcCEE
Confidence 665554
No 61
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.36 E-value=2.1 Score=30.60 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=33.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+|-.||+.+.....-+.++-+.|.+.+|.||.|+.+-
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 6889999999888888999999999999999998764
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=82.60 E-value=21 Score=34.89 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=38.1
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
...+|+|+|.. ..+...|++..++|++..-.+-+|..|... ...+.|+.+++..
T Consensus 232 ~~~vil~~~~~-~~~~~~ll~A~~~l~~~~~~~~liivG~g~-~r~~~l~~~~~~~ 285 (425)
T PRK05749 232 NRPVWIAASTH-EGEEELVLDAHRALLKQFPNLLLILVPRHP-ERFKEVEELLKKA 285 (425)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHHHHhCCCcEEEEcCCCh-hhHHHHHHHHHhC
Confidence 34577888765 445667888888887766678889999866 3335677777654
No 63
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.60 E-value=2.7 Score=47.07 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecC-CCcc-------------------------cHHHHHHHHHHhhhccc
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-PIKH-------------------------EKKVLEMIGRKLKKNSV 65 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS-Pi~~-------------------------dek~L~klaKkLKKnnV 65 (332)
+.-|..+||+|.||||... --+++||.-+ |+.+ -+|.+.+|||.+-|-+|
T Consensus 528 es~~g~alqaa~lalk~~~----gGKl~vF~s~Lpt~g~g~kl~~r~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~ 603 (1007)
T KOG1984|consen 528 ESVFGSALQAAKLALKAAD----GGKLFVFHSVLPTAGAGGKLSNRDDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGC 603 (1007)
T ss_pred chhHHHHHHHHHHHHhccC----CceEEEEecccccccCcccccccchhhhhcccchhhccCcchhHHHHHHHHHHHhCc
Confidence 4668899999999999986 5678999754 2211 13457799999999999
Q ss_pred eeeEEEe
Q 020031 66 ALDIVNF 72 (332)
Q Consensus 66 avDII~F 72 (332)
+|||..|
T Consensus 604 svDlF~t 610 (1007)
T KOG1984|consen 604 SVDLFLT 610 (1007)
T ss_pred eEEEEEc
Confidence 9999999
No 64
>PTZ00395 Sec24-related protein; Provisional
Probab=80.27 E-value=4.5 Score=47.30 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=47.1
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc--------------------ccHHHHHHHHHHhhhccceeeEEE
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--------------------HEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~--------------------~dek~L~klaKkLKKnnVavDII~ 71 (332)
.+-|-.||+.|.++||++-. .-|||+|.+|.=. ...+-..+||..|-|.+|+||+..
T Consensus 1075 esCLGSALqAA~~aLk~~GG---GGKIiVF~SSLPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFL 1151 (1560)
T PTZ00395 1075 GSCGNSALKIAMDMLKERNG---LGSICMFYTTTPNCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYAFNISVDIFI 1151 (1560)
T ss_pred cccHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCCCCCcccccccccccccccccchHHHHHHHHHHHhcCCceEEEE
Confidence 45688999999999998863 4579999876321 022345789999999999999999
Q ss_pred ecC
Q 020031 72 FGE 74 (332)
Q Consensus 72 FGe 74 (332)
|..
T Consensus 1152 fSs 1154 (1560)
T PTZ00395 1152 ISS 1154 (1560)
T ss_pred ccC
Confidence 985
No 65
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=79.43 E-value=45 Score=29.64 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=48.3
Q ss_pred ccccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC-chhh
Q 020031 32 KKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP-NALS 109 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~-~~Ls 109 (332)
......+|+|+|+--. ..-+.|+++.++|++. ..+.++.+|... ..+.+..++... ...++..++.-+ .-+.
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~--~~~~~~~~~~~~---~~~~v~~~g~~~~~~~~ 289 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGP--EKEELKELAKAL---GLDNVTFLGRVPKEELP 289 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCcc--cHHHHHHHHHHc---CCCcEEEeCCCChHHHH
Confidence 3456778999997543 3567889999999887 556777788654 335566654433 223333333221 2355
Q ss_pred HHhhhcCcc
Q 020031 110 DVLLSTPIF 118 (332)
Q Consensus 110 D~l~sSpI~ 118 (332)
+.+..+-|+
T Consensus 290 ~~~~~~di~ 298 (394)
T cd03794 290 ELLAAADVG 298 (394)
T ss_pred HHHHhhCee
Confidence 555555544
No 66
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=79.21 E-value=10 Score=33.23 Aligned_cols=83 Identities=18% Similarity=0.100 Sum_probs=45.6
Q ss_pred CcccccCccccHHHHHHHHHHHhhh-cC------CccccceEEEEe-cCCCcccHHHHHHHHHHhhh--ccceeeEEEec
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKH-RQ------NKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKK--NSVALDIVNFG 73 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKH-Rq------nK~~~qRIIvFV-GSPi~~dek~L~klaKkLKK--nnVavDII~FG 73 (332)
|..++.+|..++..||+.|.--|+. ++ .+..++.||+|- |.|- +...+....++.+. ..|.|-.|-||
T Consensus 86 l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~--~~~~~~~~~~~~~~~~~~v~i~tigiG 163 (190)
T cd01463 86 LDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPE--NYKEIFDKYNWDKNSEIPVRVFTYLIG 163 (190)
T ss_pred HhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCC--cHhHHHHHhcccccCCCcEEEEEEecC
Confidence 3456788989999999888766654 11 123344566665 4443 22222222111111 14777777778
Q ss_pred CCCCCcHHHHHHHHHH
Q 020031 74 EDDEGNTEKLEALLAA 89 (332)
Q Consensus 74 e~~~~n~~kL~~fi~~ 89 (332)
... .|...|+.+-..
T Consensus 164 ~~~-~d~~~L~~lA~~ 178 (190)
T cd01463 164 REV-TDRREIQWMACE 178 (190)
T ss_pred Ccc-ccchHHHHHHhh
Confidence 764 355666666443
No 67
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=78.78 E-value=13 Score=33.90 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=74.5
Q ss_pred ccccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhH
Q 020031 32 KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD 110 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD 110 (332)
......+|+|||+--.. .-+.|++..++|++..-.+.++..|... ..+.|..+++..+-.+ ++..++.. .-+.+
T Consensus 188 ~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~--~v~~~g~~-~~~~~ 262 (358)
T cd03812 188 ILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE--LEEEIKKKVKELGLED--KVIFLGVR-NDVPE 262 (358)
T ss_pred CCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHhcCCCC--cEEEeccc-CCHHH
Confidence 34567889999985543 4567899999999887788899999755 3467777777553323 33333332 22455
Q ss_pred HhhhcCccc----CCCCCCCchhHhHHhhh------cCCCC---CCcccCCCCCC-HHHHHHHHhcHHHHHHHHHHH
Q 020031 111 VLLSTPIFT----GDGEGGSGFAAAAAAAA------ASGAS---GYEFGVDPNLD-PELALALRVSMEEERARQEAA 173 (332)
Q Consensus 111 ~l~sSpI~~----ge~~~g~~~~~~~~~~~------~~~~~---~fefGvDP~~D-PELAmALR~SmEEEr~RQe~~ 173 (332)
.+-.+-|+- .|+.+-.-+.+.+.|.+ ++... .-..+++++.| -+||-||+--++....|+...
T Consensus 263 ~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~ 339 (358)
T cd03812 263 LLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSE 339 (358)
T ss_pred HHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhhh
Confidence 554444432 12211000011111100 00000 00113566666 678899988777666555443
No 68
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=77.51 E-value=11 Score=38.15 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=71.6
Q ss_pred ccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 87 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi 87 (332)
...|.-.|.+||++|+-.|||-.....| -|++.++|=..-|--..-++-++||+.||.|-||-.--+. -.-+.+.
T Consensus 138 ~~~g~fSLqNaLe~a~~~Lk~~p~H~sR-EVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv----~icK~l~ 212 (378)
T KOG2807|consen 138 ECSGDFSLQNALELAREVLKHMPGHVSR-EVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEV----FICKELC 212 (378)
T ss_pred ccCCChHHHHHHHHHHHHhcCCCcccce-EEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhH----HHHHHHH
Confidence 5789999999999999999998765544 3444456655678888889999999999999999885443 6667777
Q ss_pred HHHhcCCCceEEEeCCCCchhhHHhhhc
Q 020031 88 AAVNNNDSSHLVHVPPGPNALSDVLLST 115 (332)
Q Consensus 88 ~~vN~~~~Shlv~VP~G~~~LsD~l~sS 115 (332)
.+.|+ +..|+-.+.=|.+.+.-.
T Consensus 213 kaT~G-----~Y~V~lDe~HlkeLl~e~ 235 (378)
T KOG2807|consen 213 KATGG-----RYSVALDEGHLKELLLEH 235 (378)
T ss_pred HhhCC-----eEEEEeCHHHHHHHHHhc
Confidence 77752 444444333366666544
No 69
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.44 E-value=4.5 Score=28.95 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=33.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+|..||..+.....-+.++-..|++++|.||.|+.|.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 6788999998888889999999999999999998864
No 70
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=77.33 E-value=16 Score=32.70 Aligned_cols=78 Identities=14% Similarity=0.300 Sum_probs=52.3
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHhh---
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL--- 113 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~--- 113 (332)
+|+++.||. .|..-+.+..+.|++-+|.+|+-..+=+- +.++|..|++..+..+-.-||.+--...-|.=+|.
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~saHR--~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASAHR--TPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--TTT--SHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHS
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEeccC--CHHHHHHHHHHhccCCCEEEEEECCCcccchhhheecc
Confidence 688999996 67788999999999999999998887554 78999999999976333334444333334554443
Q ss_pred hcCcc
Q 020031 114 STPIF 118 (332)
Q Consensus 114 sSpI~ 118 (332)
..|+|
T Consensus 78 ~~PVI 82 (150)
T PF00731_consen 78 TLPVI 82 (150)
T ss_dssp SS-EE
T ss_pred CCCEE
Confidence 44555
No 71
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=77.31 E-value=24 Score=27.57 Aligned_cols=68 Identities=21% Similarity=0.354 Sum_probs=43.0
Q ss_pred HHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEE
Q 020031 20 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLV 99 (332)
Q Consensus 20 qiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv 99 (332)
.+..+..+|.. ...+||||..+ .+.+..+.+.|++..+.+-++.-+ .. .......++..+++...-++
T Consensus 16 ~i~~~i~~~~~---~~~~~lvf~~~-----~~~~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~~~~f~~~~~~ili 83 (131)
T cd00079 16 ALLELLKEHLK---KGGKVLIFCPS-----KKMLDELAELLRKPGIKVAALHGD-GS---QEEREEVLKDFREGEIVVLV 83 (131)
T ss_pred HHHHHHHhccc---CCCcEEEEeCc-----HHHHHHHHHHHHhcCCcEEEEECC-CC---HHHHHHHHHHHHcCCCcEEE
Confidence 34455555532 46789999877 667889999999876665555443 22 24456677777765533333
No 72
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=76.79 E-value=13 Score=39.45 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=60.8
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEe-cC---CCc-----------ccHHHHHHHHHHhhhccceee
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GS---PIK-----------HEKKVLEMIGRKLKKNSVALD 68 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV-GS---Pi~-----------~dek~L~klaKkLKKnnVavD 68 (332)
|-.+..+|...|..||..|.=.++....+..+.+||+|- |- |+. .-.+++..++++|++.+|.+=
T Consensus 473 L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~ 552 (589)
T TIGR02031 473 LDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPAL 552 (589)
T ss_pred HhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEE
Confidence 446678999999999998876665322233344555553 11 221 114677899999999999998
Q ss_pred EEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 69 IVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 69 II~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
+|.+|... .....++.+-+.. +-.++.+|.
T Consensus 553 vid~~~~~-~~~~~~~~lA~~~----~g~y~~l~~ 582 (589)
T TIGR02031 553 VIDTAMRF-VSTGFAQKLARKM----GAHYIYLPN 582 (589)
T ss_pred EEeCCCCC-ccchHHHHHHHhc----CCcEEeCCC
Confidence 88888654 3344566665555 334445543
No 73
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=1.3 Score=41.90 Aligned_cols=28 Identities=32% Similarity=0.717 Sum_probs=25.0
Q ss_pred cCHHHHHHHHhcCC--------------CCCCC-ChHHHHHHH
Q 020031 280 ADQAFVSSILASLP--------------GVDPE-DPSVKDVLT 307 (332)
Q Consensus 280 ~D~~fl~svL~~LP--------------GVDpn-d~~i~~al~ 307 (332)
-.|.||..+|...| ||||| ||.+-.||+
T Consensus 173 P~p~ll~~~~~~spig~g~~g~~~~~e~gvDp~lDpELA~Alr 215 (243)
T COG5148 173 PNPELLDRVLPFSPIGQGVVGDDLQLEYGVDPNLDPELAEALR 215 (243)
T ss_pred CCHHHHHhhccCCccccccccCccceecCCCCCCCHHHHHHHH
Confidence 57999999999988 69999 999998886
No 74
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=76.17 E-value=57 Score=29.05 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=30.7
Q ss_pred cccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 33 KQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.....+|+|+|+--. -.-+.|++.+++|++ -.+.++.+|...
T Consensus 188 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~ 230 (359)
T cd03823 188 PGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGL 230 (359)
T ss_pred CCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCch
Confidence 345677889998544 356778999999988 456677888765
No 75
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=75.33 E-value=5.3 Score=26.89 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+|-++|.++.....-+.++-+.|.+++|.||.|+-+.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5678999987777778899999999999999998764
No 76
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=75.11 E-value=16 Score=32.13 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=41.3
Q ss_pred CccccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 31 NKKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 31 nK~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
......++|+|+|+-.. ..-+.+++..+++++.+..+-++..|... ....+..+++..
T Consensus 197 ~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~--~~~~~~~~~~~~ 255 (377)
T cd03798 197 GLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP--LREALEALAAEL 255 (377)
T ss_pred cCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc--chHHHHHHHHhc
Confidence 34557789999998543 35677889999998876677777888655 345666666644
No 77
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=73.78 E-value=57 Score=30.93 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=51.1
Q ss_pred cCCccccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCC---cHHHHHHHHHHHhcCCCceEEEeCC-
Q 020031 29 RQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEG---NTEKLEALLAAVNNNDSSHLVHVPP- 103 (332)
Q Consensus 29 RqnK~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~---n~~kL~~fi~~vN~~~~Shlv~VP~- 103 (332)
+-+......+|+|||.=... .-..|++..++|++..-.+-+|.+|..... ..+.++..++..+..++-+|+..++
T Consensus 183 ~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (372)
T cd03792 183 KYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPV 262 (372)
T ss_pred HhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCC
Confidence 33334467799999975443 556688888888776555778888875311 1233555554444334445554442
Q ss_pred CCchhhHHhhhcCcc
Q 020031 104 GPNALSDVLLSTPIF 118 (332)
Q Consensus 104 G~~~LsD~l~sSpI~ 118 (332)
....+.+.+-.+-++
T Consensus 263 ~~~~~~~~~~~ad~~ 277 (372)
T cd03792 263 SDLEVNALQRASTVV 277 (372)
T ss_pred CHHHHHHHHHhCeEE
Confidence 223455555444443
No 78
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=73.53 E-value=27 Score=37.40 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=66.7
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEe-cCCCc---------ccHHHHHHHHHHhhhccceeeEEEec
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIK---------HEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV-GSPi~---------~dek~L~klaKkLKKnnVavDII~FG 73 (332)
|-.+..+|...|..||..|.-.|++...+..+.+||++- |-+-. ....+...+++++++.+|.+=+|.+|
T Consensus 467 L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g 546 (584)
T PRK13406 467 LAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTS 546 (584)
T ss_pred HhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecC
Confidence 445678899999999999977666544344455666654 22211 11245678899999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCceEEEeCCC-CchhhHHhh
Q 020031 74 EDDEGNTEKLEALLAAVNNNDSSHLVHVPPG-PNALSDVLL 113 (332)
Q Consensus 74 e~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G-~~~LsD~l~ 113 (332)
... ...++.+-+.. +-.++.+|.- ..-|++++-
T Consensus 547 ~~~---~~~~~~LA~~~----gg~y~~l~~~~a~~~~~~v~ 580 (584)
T PRK13406 547 PRP---QPQARALAEAM----GARYLPLPRADAGRLSQAVR 580 (584)
T ss_pred CCC---cHHHHHHHHhc----CCeEEECCCCCHHHHHHHHH
Confidence 654 23455544444 4667777753 333555543
No 79
>PRK06756 flavodoxin; Provisional
Probab=73.51 E-value=5.7 Score=33.60 Aligned_cols=40 Identities=5% Similarity=0.300 Sum_probs=35.7
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
++|+++.+|+--.+++-...|++.|++.++.|+++++-+.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS 41 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc
Confidence 5899999999889999999999999999999999987543
No 80
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=73.25 E-value=15 Score=39.23 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=57.2
Q ss_pred CcccccCccccHHHHHHHHHHHhhh--cCCccccceEEEEecC--C----C-cccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGS--P----I-KHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKH--RqnK~~~qRIIvFVGS--P----i-~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
|..+..+|...|..||..|.-.|++ +..+. +.++||+|.- + + ....++...++++|++.+|.+-+|.++.
T Consensus 532 L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~-~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~ 610 (633)
T TIGR02442 532 LEELPTGGRTPLAAGLLKAAEVLSNELLRDDD-GRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTES 610 (633)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHhhccCCC-CceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4456789999999999999888874 22232 3344444421 1 1 1234567889999999999999998865
Q ss_pred CCCCcHHHHHHHHHHH
Q 020031 75 DDEGNTEKLEALLAAV 90 (332)
Q Consensus 75 ~~~~n~~kL~~fi~~v 90 (332)
.. -....++.+-+..
T Consensus 611 ~~-~~~~~~~~lA~~~ 625 (633)
T TIGR02442 611 GF-VRLGLAEDLARAL 625 (633)
T ss_pred CC-cchhHHHHHHHhh
Confidence 43 3456677766665
No 81
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=73.00 E-value=57 Score=31.07 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=41.2
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccce--eeEEEecCCCC---CcHHHHHHHHHHHhc
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVA--LDIVNFGEDDE---GNTEKLEALLAAVNN 92 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVa--vDII~FGe~~~---~n~~kL~~fi~~vN~ 92 (332)
...++|+|+|.-... .-+.|++..++|+++.-. +.++..|.... ...+.|+.+++..+-
T Consensus 217 ~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l 281 (405)
T TIGR03449 217 LDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGI 281 (405)
T ss_pred CCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCC
Confidence 356899999986653 457789999998876544 78888886331 234667777776643
No 82
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.64 E-value=13 Score=33.83 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=41.9
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
+||+|||.+=.-=.-.+.|||.++++++-.|=+|+.--.-..-.+.|+.|.+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 6899999876655667899999999889999999985433244788999999885
No 83
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=72.59 E-value=67 Score=28.21 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=34.7
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..+..+|+|+|+-... .-..+++..++|++.+..+-++.+|...
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~ 229 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD 229 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC
Confidence 3467899999975543 5678899999999877778888888766
No 84
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.07 E-value=7 Score=28.18 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=33.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+|..||+.+.....-+.++-+.|.+.+|.||.|+-|-
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 6888999998888889999999999999999998764
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=71.33 E-value=80 Score=29.67 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=47.8
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhcc----ceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhh
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS----VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALS 109 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnn----VavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~Ls 109 (332)
...+|+|||.--.. .-..|++..++|.+.. -.+-++.+|... ..+.|+.+++..+- .+.+.++.-..-+.
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~---~~~v~~~g~~~~~~ 267 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGP--ARGACEQMVRAAGL---AHLVWLPGERDDVP 267 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCc--hHHHHHHHHHHcCC---cceEEEcCCcCCHH
Confidence 45689999986543 4566777777765543 257888999754 34678888876643 22333322112256
Q ss_pred HHhhhcCcc
Q 020031 110 DVLLSTPIF 118 (332)
Q Consensus 110 D~l~sSpI~ 118 (332)
+.+..+-|+
T Consensus 268 ~~~~~adi~ 276 (374)
T TIGR03088 268 ALMQALDLF 276 (374)
T ss_pred HHHHhcCEE
Confidence 666666554
No 86
>PRK13685 hypothetical protein; Provisional
Probab=70.50 E-value=22 Score=34.51 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=44.7
Q ss_pred CcccccCccccHHHHHHHHHHHhhhc-----C-CccccceEEEEe-cCCCcc----cHHHHHHHHHHhhhccceeeEEEe
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHR-----Q-NKKQQQRIIVFV-GSPIKH----EKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHR-----q-nK~~~qRIIvFV-GSPi~~----dek~L~klaKkLKKnnVavDII~F 72 (332)
|..+.++|..++..+|..|.=.++.- . ......+||+|- |-.-.. +.......++.+++.+|.|.+|-|
T Consensus 157 l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~ 236 (326)
T PRK13685 157 IDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISF 236 (326)
T ss_pred HHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEE
Confidence 34566777778888888886555421 1 122245666654 221110 112235678889999999999999
Q ss_pred cCC
Q 020031 73 GED 75 (332)
Q Consensus 73 Ge~ 75 (332)
|..
T Consensus 237 G~~ 239 (326)
T PRK13685 237 GTP 239 (326)
T ss_pred CCC
Confidence 975
No 87
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=70.46 E-value=18 Score=38.51 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEec--CCCccc--H-HHHHHHHHHhhhccceeeEEEe
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVG--SPIKHE--K-KVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVG--SPi~~d--e-k~L~klaKkLKKnnVavDII~F 72 (332)
.+|..+|-+|+=.|...+.|..++||++|-- +|+..+ . ......|+.|++.+|.|+++.+
T Consensus 117 ~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl~~~gi~ielf~l 181 (584)
T TIGR00578 117 YSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHL 181 (584)
T ss_pred CcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHHHhcCeEEEEEec
Confidence 3789999999988887666777899999964 576543 2 2336689999999999999843
No 88
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=70.11 E-value=19 Score=36.57 Aligned_cols=103 Identities=15% Similarity=0.278 Sum_probs=77.5
Q ss_pred ccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 87 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi 87 (332)
.+.|+-.|.+||..|..-|-|-.- +.-.-|++.+||-...|--+.-+.--+|.-.||.|.||...-+. .....+.
T Consensus 165 d~~gnfSLqNaLEmar~~l~~~~~-H~trEvLiifgS~st~DPgdi~~tid~Lv~~~IrV~~igL~aev----aicKeic 239 (421)
T COG5151 165 DCSGNFSLQNALEMARIELMKNTM-HGTREVLIIFGSTSTRDPGDIAETIDKLVAYNIRVHFIGLCAEV----AICKEIC 239 (421)
T ss_pred ccCCChhHHhHHHHhhhhhccccc-ccceEEEEEEeecccCCCccHHHHHHHHHhhceEEEEEeehhHH----HHHHHHH
Confidence 578999999999999777766442 22456777789988888888888888899999999999986444 7888999
Q ss_pred HHHhcCCCceE-EEeCCCCchhhHHhhhcCc
Q 020031 88 AAVNNNDSSHL-VHVPPGPNALSDVLLSTPI 117 (332)
Q Consensus 88 ~~vN~~~~Shl-v~VP~G~~~LsD~l~sSpI 117 (332)
.+.|+++.+.+ |.|-.| + |++.+.-+-+
T Consensus 240 kaTn~~~e~~y~v~vde~-H-l~el~~E~~~ 268 (421)
T COG5151 240 KATNSSTEGRYYVPVDEG-H-LSELMRELSH 268 (421)
T ss_pred hhcCcCcCceeEeeecHH-H-HHHHHHhcCC
Confidence 99998776554 444444 3 7777765433
No 89
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=69.90 E-value=3.9 Score=43.54 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=27.3
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.=|+||.||=.+.-.++.++|++++..+..+.+|++|...
T Consensus 117 ~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~ 156 (707)
T PF03028_consen 117 TPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQ 156 (707)
T ss_dssp C-EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHH
T ss_pred CceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCch
Confidence 4578899998888889999999988556889999999765
No 90
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=69.88 E-value=73 Score=28.86 Aligned_cols=53 Identities=28% Similarity=0.298 Sum_probs=33.7
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.....+|+|+|.-... .-+.|+++.++|+ .+.++..|... ....++.++...+
T Consensus 188 ~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g~--~~~~~~~~~~~~~ 241 (357)
T cd03795 188 AAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEGP--LEAELEALAAALG 241 (357)
T ss_pred CCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCCh--hHHHHHHHHHhcC
Confidence 3456789999984432 4566788888877 45566666543 2356666665443
No 91
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=69.60 E-value=22 Score=35.73 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhcCCccccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCC--CCcHHHHHHHHHHHhc
Q 020031 17 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD--EGNTEKLEALLAAVNN 92 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~--~~n~~kL~~fi~~vN~ 92 (332)
+||.+..+.-..+........+|+|||.-... +-+.|++..++|++..-.+-++.+|... ..-.+.++.+++..+-
T Consensus 274 Ngid~~~f~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l 352 (475)
T cd03813 274 NGIDPERFAPARRARPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL 352 (475)
T ss_pred CCcCHHHcCCccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC
Confidence 44444443322222234467899999997653 5677899999999887777888888753 1224566777776653
No 92
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=69.52 E-value=8.4 Score=26.99 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=30.6
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F 72 (332)
+|.++|..+..+..-+.++-..|.+.||.|+.|+.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 47788999888877788999999999999999973
No 93
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=69.31 E-value=81 Score=27.85 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=37.6
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
...+|+|+|+--.. .-+.|++..++|++.+-.+.++.+|... . ...++.+..
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-~-~~~~~~~~~ 244 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGP-D-RANLELLAL 244 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCc-c-hhHHHHHHH
Confidence 45688999986543 4577889999998877778888899765 2 345555555
No 94
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=68.83 E-value=22 Score=32.96 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=40.6
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCc----HHHHHHHHHHHh
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN----TEKLEALLAAVN 91 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n----~~kL~~fi~~vN 91 (332)
...+|+|+|+.-.. .-..|++.+++|++.+..+.++.+|.....+ ...|+.+++..+
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~ 280 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELG 280 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcC
Confidence 45789999986543 5678999999999887778899998755222 233566666553
No 95
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=68.64 E-value=8.9 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=31.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+|-++|..+..+..-+.++-..|.+.+|.|+.|+-+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5778899998877788899999999999999987654
No 96
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=68.51 E-value=28 Score=31.31 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=34.0
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
....++|+|+|+-... .-..|+...+++++.+-.+-++.+|...
T Consensus 182 ~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~ 226 (366)
T cd03822 182 LDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETH 226 (366)
T ss_pred CCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCc
Confidence 3456889999986553 4577888889999887778888888765
No 97
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.87 E-value=9.5 Score=26.71 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=30.6
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F 72 (332)
+|-++|..+.....-+.++-+.|.+++|.||.|+.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 47788999888777788999999999999999973
No 98
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=67.36 E-value=93 Score=27.82 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=30.6
Q ss_pred cceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..++|+|+|+--. ..-+.++++.++|++. -.+.++.+|...
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~ 237 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDGP 237 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCCc
Confidence 4578999998543 3557899999999886 567788888644
No 99
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=67.32 E-value=10 Score=28.52 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=32.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+|..||+.+..+..-+.++-+.|.+++|.+|.|+.|
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 577889999888888999999999999999999876
No 100
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=66.69 E-value=28 Score=30.44 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=38.8
Q ss_pred eEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCCCC-------CcHHHHHHHHHHHh
Q 020031 37 RIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~~~-------~n~~kL~~fi~~vN 91 (332)
||++++|||-.. +.+-+..+.+.|+..++.+++|...+... ...+.++.+.+.+-
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~ 64 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVA 64 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHH
Confidence 589999999763 56666777888888899999998765220 12355666666663
No 101
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=65.90 E-value=8.9 Score=32.29 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.5
Q ss_pred eEEEecCCCCCcHHHHHHHHHHHhcCCCc
Q 020031 68 DIVNFGEDDEGNTEKLEALLAAVNNNDSS 96 (332)
Q Consensus 68 DII~FGe~~~~n~~kL~~fi~~vN~~~~S 96 (332)
|||+=+... .|.++|..||+.|+.+-..
T Consensus 4 DVi~~~~~i-~Nl~kl~~Fi~nv~~~k~d 31 (98)
T PF14275_consen 4 DVINKHGEI-ENLDKLDQFIENVEQGKPD 31 (98)
T ss_pred CEEEeCCeE-EeHHHHHHHHHHHhcCCCC
Confidence 677666666 7999999999999976544
No 102
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=64.90 E-value=13 Score=33.76 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=46.4
Q ss_pred ceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCCCC-------CcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 36 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 36 qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~~~-------~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
++|++|.|||-.. +.+-+..+++.|+..++.+.+|...+... ...+.++.+++.+..-| .+|.+-|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD--~iIi~tP 75 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD--GLIVATP 75 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC--EEEEECC
Confidence 5899999999864 56777888889998999999987765321 11346778888885333 4544443
No 103
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=64.80 E-value=29 Score=29.42 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=37.7
Q ss_pred eEEEEecCCC---cccHHHHHHHHHHhhhccceeeEEE---ecCCCCCcHHHHHHHHHH
Q 020031 37 RIIVFVGSPI---KHEKKVLEMIGRKLKKNSVALDIVN---FGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 37 RIIvFVGSPi---~~dek~L~klaKkLKKnnVavDII~---FGe~~~~n~~kL~~fi~~ 89 (332)
-+|.|.+|=. ...-..|.++.++++..+|.|=-|+ ||....++.+.+.+|++.
T Consensus 25 vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 25 SLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred EEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 3556654433 3455578899999998888876676 676644567889999975
No 104
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=64.75 E-value=11 Score=31.52 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=27.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
|||++.|+..+..-+ ...+.++|++.+..|.||.
T Consensus 1 k~i~l~vtGs~~~~~--~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK--APDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGGGG--HHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHHHHH--HHHHHHHHhhCCCEEEEEE
Confidence 689999998877655 8889999999999998875
No 105
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=64.40 E-value=8.7 Score=33.61 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=53.2
Q ss_pred HHHHHHhhhcCCccccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceE
Q 020031 20 QVAQLALKHRQNKKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHL 98 (332)
Q Consensus 20 qiA~LALKHRqnK~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shl 98 (332)
-++.+-++.|..|..+.=--+--|||+. .+++...+|.++|.+....+.|.. |=.- ..+-++.-++.+-..+-.++
T Consensus 40 ~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~-amry--~~P~i~~~l~~l~~~g~~~i 116 (159)
T cd03411 40 ILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEALEKALDERGIDVKVYL-AMRY--GPPSIEEALEELKADGVDRI 116 (159)
T ss_pred HHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhccCCCcEEEe-hHhc--CCCCHHHHHHHHHHcCCCEE
Confidence 3667778888877664322222399995 688999999999988653333333 2111 12335555555555566899
Q ss_pred EEeCCCCc
Q 020031 99 VHVPPGPN 106 (332)
Q Consensus 99 v~VP~G~~ 106 (332)
|.+|=-|+
T Consensus 117 ivlPl~P~ 124 (159)
T cd03411 117 VVLPLYPQ 124 (159)
T ss_pred EEEECCcc
Confidence 99987764
No 106
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=63.95 E-value=69 Score=28.13 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=47.3
Q ss_pred CccccHHHHHHHHHHHhhhc------CCccccceEEEEe-cCCCc-ccHHHHHHHHHH----------hhhccceeeEEE
Q 020031 10 GGELNLAAGIQVAQLALKHR------QNKKQQQRIIVFV-GSPIK-HEKKVLEMIGRK----------LKKNSVALDIVN 71 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHR------qnK~~~qRIIvFV-GSPi~-~dek~L~klaKk----------LKKnnVavDII~ 71 (332)
+|..++..||+.|.=.|... .....++.||+|- |-|-. .+........+. +|+.+|.|-.|-
T Consensus 82 ~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iG 161 (198)
T cd01470 82 KTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVFG 161 (198)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEEEe
Confidence 35678888888765333211 1122345555554 33332 122222222222 366788888888
Q ss_pred ecCCCCCcHHHHHHHHHHHhcCCC-ceEEEeCC
Q 020031 72 FGEDDEGNTEKLEALLAAVNNNDS-SHLVHVPP 103 (332)
Q Consensus 72 FGe~~~~n~~kL~~fi~~vN~~~~-Shlv~VP~ 103 (332)
||... |.+.|+.+-. ..++ .|++++..
T Consensus 162 vG~~~--~~~~L~~iA~---~~~g~~~~f~~~~ 189 (198)
T cd01470 162 VGDDV--NKEELNDLAS---KKDNERHFFKLKD 189 (198)
T ss_pred cCccc--CHHHHHHHhc---CCCCCceEEEeCC
Confidence 88654 5566666533 1234 48888765
No 107
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=63.90 E-value=36 Score=38.37 Aligned_cols=74 Identities=15% Similarity=0.308 Sum_probs=53.9
Q ss_pred ccCccccHHHHHHHHHHHhhhcCCccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 86 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~f 86 (332)
..+|...|..||+.|.=.|+++..++....||++- |-+- + ...+.+.+++++|.|..|.||... ...|+.+
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn--~---~~~~l~~lk~~gVtI~TIg~G~da---d~~L~~I 449 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDN--T---ISSCFEEVKQSGAIIHTIALGPSA---AKELEEL 449 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCC--C---HHHHHHHHHHcCCEEEEEEeCCCh---HHHHHHH
Confidence 46788999999999999999987665566677764 3221 1 235667788899999999999765 2447665
Q ss_pred HHH
Q 020031 87 LAA 89 (332)
Q Consensus 87 i~~ 89 (332)
-+.
T Consensus 450 A~~ 452 (863)
T TIGR00868 450 SDM 452 (863)
T ss_pred HHh
Confidence 443
No 108
>PRK05569 flavodoxin; Provisional
Probab=63.88 E-value=15 Score=30.54 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=35.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.+|+++-+||-..+++-...|++.|++.++.|+++.+-+..
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~ 42 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK 42 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC
Confidence 37999999997788999999999999999999988875543
No 109
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=63.40 E-value=31 Score=32.50 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=51.6
Q ss_pred HHHhhhcCCccccceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCCCC-----CcHHHHHHHHHHHhcCC
Q 020031 23 QLALKHRQNKKQQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-----GNTEKLEALLAAVNNND 94 (332)
Q Consensus 23 ~LALKHRqnK~~~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~~~-----~n~~kL~~fi~~vN~~~ 94 (332)
...+=.-..|+...||++++||.=.. +.+-+..+++.+...++.|++|.+.+..- +..+-...|.+.|..-|
T Consensus 14 ~~~~~~~~~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD 92 (219)
T TIGR02690 14 LRPLFSATHKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE 92 (219)
T ss_pred hhhccCCCCCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC
Confidence 34444456678889999999998774 67777888888887799999998875321 12346677778775433
No 110
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3QSV_A 1MHD_A 1OZJ_A 3KMP_B.
Probab=63.33 E-value=10 Score=31.93 Aligned_cols=37 Identities=35% Similarity=0.547 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc--CCCceEEEeC
Q 020031 50 KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVP 102 (332)
Q Consensus 50 ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~--~~~Shlv~VP 102 (332)
++....|-|||||++ .-|+.|+.+|.+ +..+.-|+||
T Consensus 2 ~k~~~sLlkkLK~~~----------------~~le~L~~Av~s~g~~~t~CV~i~ 40 (103)
T PF03165_consen 2 EKAIKSLLKKLKKKI----------------GQLEELLKAVESRGDPPTKCVTIP 40 (103)
T ss_dssp HHHHHHHHHHHTTTC----------------THHHHHHHHHHCTTTSTS---EEE
T ss_pred hHHHHHHHHHHcccc----------------chHHHHHHHHhcCCCCCCCcEEec
Confidence 467788999999964 238999999994 4578899998
No 111
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=63.29 E-value=30 Score=33.36 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=43.2
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
..+.+|+|+|.-... .-+.|++..++|++++-.+-++.+|+.. -.+.|+.+++..+-
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l 248 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP--KRILLEEMREKYNL 248 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--hHHHHHHHHHHhCC
Confidence 456789999976443 4567899999999888888899999765 24668888877643
No 112
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=63.25 E-value=15 Score=29.58 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=27.8
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
||+++.-+| +.-..++++.|+|+|+.|+||.++...
T Consensus 1 KIl~i~~~~----~~~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 1 KILLIGNTP----STFIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred CEEEEecCc----HHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 455555556 345789999999999999999996553
No 113
>PRK06703 flavodoxin; Provisional
Probab=62.82 E-value=13 Score=31.45 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=36.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+||+++.+|.-..+++-..+|++.|.+.++.|+++...+..
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~ 42 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD 42 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC
Confidence 47999999988889999999999999999999998886543
No 114
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=62.23 E-value=90 Score=27.24 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=47.6
Q ss_pred Ccc-ccHHHHHHHHHHH-hhh----cCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHH
Q 020031 10 GGE-LNLAAGIQVAQLA-LKH----RQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 83 (332)
Q Consensus 10 ~G~-~~~~~gIqiA~LA-LKH----RqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL 83 (332)
+|. .+...||+-+.-- +.. |..++-.+.+|+|....-. +.+..-|+.||+.+|-|-.|-.| . .|.+.|
T Consensus 76 ~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~---d~~~~~a~~lr~~gv~i~~vG~~--~-~~~~eL 149 (165)
T cd01481 76 GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ---DDVERPAVALKRAGIVPFAIGAR--N-ADLAEL 149 (165)
T ss_pred CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc---chHHHHHHHHHHCCcEEEEEeCC--c-CCHHHH
Confidence 453 6788888866432 222 2223334455566554422 35778899999999776555444 3 455656
Q ss_pred HHHHHHHhcCCCceEEEeC
Q 020031 84 EALLAAVNNNDSSHLVHVP 102 (332)
Q Consensus 84 ~~fi~~vN~~~~Shlv~VP 102 (332)
+.+. ++.+|+++|+
T Consensus 150 ~~ia-----s~p~~vf~v~ 163 (165)
T cd01481 150 QQIA-----FDPSFVFQVS 163 (165)
T ss_pred HHHh-----CCCccEEEec
Confidence 5543 2346777765
No 115
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=61.52 E-value=19 Score=35.86 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred HHHHHHhhhcCCccc-----cceEEEEecCCCcccH-HHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcC
Q 020031 20 QVAQLALKHRQNKKQ-----QQRIIVFVGSPIKHEK-KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN 93 (332)
Q Consensus 20 qiA~LALKHRqnK~~-----~qRIIvFVGSPi~~de-k~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~ 93 (332)
--+.|+-=||.+|.- +-||+||-.+|....+ --+-+.-=---|-||-||+++.|+.. -.|+.=.++.
T Consensus 146 ls~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~qyi~~MNciFaAqKq~I~Idv~~l~~~s----~~LqQa~D~T--- 218 (314)
T KOG2487|consen 146 LSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQYIPYMNCIFAAQKQNIPIDVVSLGGDS----GFLQQACDIT--- 218 (314)
T ss_pred hhhccchHhhhhhhhhhhhhhceEEEEEechHHHhhhhhHHHHHHHHHhcCceeEEEEecCCc----hHHHHHHhhc---
Confidence 345566777777766 9999999998876432 12222222335789999999999763 3444433333
Q ss_pred CCceEEEeCCCCchhhHHhhhc
Q 020031 94 DSSHLVHVPPGPNALSDVLLST 115 (332)
Q Consensus 94 ~~Shlv~VP~G~~~LsD~l~sS 115 (332)
|--+++|+.-+. |--+|+..
T Consensus 219 -GG~YL~v~~~~g-LLqyLlt~ 238 (314)
T KOG2487|consen 219 -GGDYLHVEKPDG-LLQYLLTL 238 (314)
T ss_pred -CCeeEecCCcch-HHHHHHHH
Confidence 445677774333 56666665
No 116
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=61.47 E-value=30 Score=34.22 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=42.5
Q ss_pred ceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCC
Q 020031 36 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND 94 (332)
Q Consensus 36 qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~ 94 (332)
...|+|||.-... .-..|++..++|++.+..+-++..|... -.++|++++...+-.+
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~--~~~~l~~~~~~~~l~~ 279 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP--WERRLRTLIEQYQLED 279 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch--hHHHHHHHHHHcCCCC
Confidence 3468899987753 5667999999999887777788888654 3477888888765333
No 117
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=61.28 E-value=34 Score=32.14 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=44.1
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhcc---ceeeEEEecCCCCC---c---HHHHHHHHHH-HhcCCCceEE
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS---VALDIVNFGEDDEG---N---TEKLEALLAA-VNNNDSSHLV 99 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnn---VavDII~FGe~~~~---n---~~kL~~fi~~-vN~~~~Shlv 99 (332)
....+|+|+|.-... .-+.|++..++|++.+ ..+.++.+|..... + .++|+.+++. .+-.++-+|+
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~ 285 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFL 285 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEe
Confidence 455788999985543 6677999999998876 67888999975421 1 3567777766 4323334443
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=59.95 E-value=43 Score=32.56 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=32.9
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
...++|+|+|.-... .-..|++..++|++..-.+-++.+|+..
T Consensus 191 ~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~ 234 (380)
T PRK15484 191 PDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPT 234 (380)
T ss_pred CCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 356889999986653 4567888899998877777888888643
No 119
>PRK05568 flavodoxin; Provisional
Probab=59.57 E-value=20 Score=29.71 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=35.2
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|++|-+|+--.+++-...|++.+++.++.|+++.+-+..
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 6889999988899999999999999999999999886543
No 120
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=58.98 E-value=60 Score=32.22 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=57.1
Q ss_pred hcCCccccceEEEEecCCCcccHHHHH-HHHHHhhhccc--eeeEEEe-c------------------CCCCCcHHHHHH
Q 020031 28 HRQNKKQQQRIIVFVGSPIKHEKKVLE-MIGRKLKKNSV--ALDIVNF-G------------------EDDEGNTEKLEA 85 (332)
Q Consensus 28 HRqnK~~~qRIIvFVGSPi~~dek~L~-klaKkLKKnnV--avDII~F-G------------------e~~~~n~~kL~~ 85 (332)
.....+++.|.||+++.|...-+..+. .|.+.|+.-.- .|++|-. | -...=...+|-.
T Consensus 73 ~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~ 152 (283)
T COG1072 73 FLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLR 152 (283)
T ss_pred HhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHH
Confidence 334677899999999999987655553 34444554444 4898865 2 222234788999
Q ss_pred HHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 86 LLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 86 fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
|+..|.+ ++--|.+|--.|+++|.+
T Consensus 153 fl~~vK~--~~~~v~aPvysh~~yD~v 177 (283)
T COG1072 153 FLSDVKA--GKPDVFAPVYSHLIYDPV 177 (283)
T ss_pred HHHHHhc--CCCccccccccccccccC
Confidence 9999975 566677777777777776
No 121
>PRK00170 azoreductase; Reviewed
Probab=58.92 E-value=20 Score=31.52 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=31.1
Q ss_pred ceEEEEecCCCcc---cHHHHHHHHHHhhhc--cceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKH---EKKVLEMIGRKLKKN--SVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~---dek~L~klaKkLKKn--nVavDII~FGe~ 75 (332)
+||++++|||-.. +..-+..+.+.|++. +..|++|...+.
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~ 46 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAE 46 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 5899999999764 345556777888888 899999987654
No 122
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=58.86 E-value=35 Score=32.64 Aligned_cols=88 Identities=19% Similarity=0.318 Sum_probs=58.3
Q ss_pred CCcccccCc----c-ccHHHHHHHHHHHhh----hcCCccc---cceEEEEecCCCc-----c----cHHHHHHHHHHhh
Q 020031 3 LDAGLEIGG----E-LNLAAGIQVAQLALK----HRQNKKQ---QQRIIVFVGSPIK-----H----EKKVLEMIGRKLK 61 (332)
Q Consensus 3 ~lH~i~i~G----~-~~~~~gIqiA~LALK----HRqnK~~---~qRIIvFVGSPi~-----~----dek~L~klaKkLK 61 (332)
.|+.|+..| + +++..||-.|.-.+- .|++-.+ ++..|+-..||-. + .-+....+|..+.
T Consensus 95 ~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~~~~~~~~~d~la~~~~ 174 (226)
T PF11265_consen 95 WLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNECPQYSGKTCDQLAVLIS 174 (226)
T ss_pred HHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCCCcccCCCHHHHHHHHH
Confidence 355664443 2 457777777776655 3654333 3455555556643 1 2346789999999
Q ss_pred hccceeeEEEecCCCCCcHHHHHHHHHHHhcCCC
Q 020031 62 KNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS 95 (332)
Q Consensus 62 KnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~ 95 (332)
++||.+-||+= ....+|..|.+..+.+..
T Consensus 175 ~~~I~LSiisP-----rklP~l~~Lfeka~~~~~ 203 (226)
T PF11265_consen 175 ERNISLSIISP-----RKLPSLRSLFEKAKGNPR 203 (226)
T ss_pred hcCceEEEEcC-----ccCHHHHHHHHhcCCCcc
Confidence 99999999974 456889999998876543
No 123
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=58.26 E-value=16 Score=32.01 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=36.2
Q ss_pred eEEEEecCCCcc--cHHHHHHHHHHhh-hccceeeEEEecCCC---------CCcHHHHHHHHHHHhc
Q 020031 37 RIIVFVGSPIKH--EKKVLEMIGRKLK-KNSVALDIVNFGEDD---------EGNTEKLEALLAAVNN 92 (332)
Q Consensus 37 RIIvFVGSPi~~--dek~L~klaKkLK-KnnVavDII~FGe~~---------~~n~~kL~~fi~~vN~ 92 (332)
+|++++|||-.. +.+-+..+.+.|. +.++.|++|...+.. ..-.+.++.|.+.+..
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIES 68 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHH
Confidence 699999999763 4555555666665 678888888765431 0113456666666643
No 124
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=58.18 E-value=63 Score=29.38 Aligned_cols=70 Identities=9% Similarity=0.151 Sum_probs=43.9
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
.++.||. -|-.-+.+.++.|++-+|..|+-..+=+- ..++|..|+......+-.-||.+--+..-|.=+|
T Consensus 2 ~IimGS~--SD~~~~~~a~~~L~~~gi~~dv~V~SaHR--tp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvv 71 (156)
T TIGR01162 2 GIIMGSD--SDLPTMKKAADILEEFGIPYELRVVSAHR--TPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMV 71 (156)
T ss_pred EEEECcH--hhHHHHHHHHHHHHHcCCCeEEEEECccc--CHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHH
Confidence 4666664 45666778888888888888887777554 6788888887766443333333333333344443
No 125
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.60 E-value=14 Score=35.78 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=45.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
=||||+-||....+-|.+++..||++.+=+||-+ .....+++|-.... ++. +||..-|
T Consensus 66 D~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S------~K~~v~~a~~~~~~-~~~-~~vg~HP 123 (279)
T COG0287 66 DLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGS------VKSSVVEAMEKYLP-GDV-RFVGGHP 123 (279)
T ss_pred CEEEEeccHHHHHHHHHHhcccCCCCCEEEeccc------ccHHHHHHHHHhcc-CCC-eeEecCC
Confidence 4899999999999999999999999999998754 35566777766652 223 7776655
No 126
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=57.44 E-value=18 Score=29.46 Aligned_cols=39 Identities=18% Similarity=0.402 Sum_probs=33.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|+++.+|+-..+++-...|++.|+..++.|+++.+.+..
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~ 39 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADAD 39 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCC
Confidence 678899998889999999999999999999999886543
No 127
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.30 E-value=35 Score=35.38 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=49.7
Q ss_pred CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 30 QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 30 qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
.++.-+.||||||=..|...- .+.-=|+-|-|.+-.||+|-|++.- . ++.++ | ..+.|++.+|+
T Consensus 7 ~~~~~k~ra~vvVLGDvGRSP-RMqYHA~Sla~~gf~VdliGy~~s~-p----~e~l~---~-hprI~ih~m~~ 70 (444)
T KOG2941|consen 7 ENKSKKKRAIVVVLGDVGRSP-RMQYHALSLAKLGFQVDLIGYVESI-P----LEELL---N-HPRIRIHGMPN 70 (444)
T ss_pred ccccccceEEEEEecccCCCh-HHHHHHHHHHHcCCeEEEEEecCCC-C----hHHHh---c-CCceEEEeCCC
Confidence 467779999999988776544 3677788888999999999999875 2 33333 3 68899999986
No 128
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=56.29 E-value=45 Score=24.40 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=33.0
Q ss_pred EecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeC
Q 020031 41 FVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 102 (332)
Q Consensus 41 FVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP 102 (332)
||.+.-.+..+...+++++|++.++.|++...+. + +..-+...+..+-.+++.+-
T Consensus 5 ~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~----~---~~~~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 5 YVVPLGEGALSEALELAEQLRDAGIKAEIDYGGR----K---LKKQFKYADRSGARFAVILG 59 (91)
T ss_pred EEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCC----C---HHHHHHHHHHcCCCEEEEEc
Confidence 3443334556778999999999999998855431 2 23333334433445555554
No 129
>PRK10307 putative glycosyl transferase; Provisional
Probab=54.50 E-value=55 Score=31.62 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=39.4
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
...+|+|+|+-... .-+.|++.+++|++. -.+-++.+|+.. -.+.|+.+++..+
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~~~-~~~~l~ivG~g~--~~~~l~~~~~~~~ 282 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLRDR-PDLIFVICGQGG--GKARLEKMAQCRG 282 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhccC-CCeEEEEECCCh--hHHHHHHHHHHcC
Confidence 45689999986553 567789999998764 457888999755 3467887777654
No 130
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=53.88 E-value=52 Score=32.69 Aligned_cols=41 Identities=10% Similarity=0.317 Sum_probs=32.1
Q ss_pred ccccceEEEEecCCCc-ccHHHHHHHHHHhhhc-------cceeeEEEecC
Q 020031 32 KKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKN-------SVALDIVNFGE 74 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~-~dek~L~klaKkLKKn-------nVavDII~FGe 74 (332)
..+|++||++ |-+. ++.+.|.+|.|-|.+. .+.+=||.+|.
T Consensus 24 ~~~~~~~Vil--SDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~Gn 72 (291)
T PTZ00235 24 NDKRHNWIIM--HDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGD 72 (291)
T ss_pred CCCceEEEEE--EeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecC
Confidence 4456777777 8886 5789999999998877 24778898887
No 131
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=53.55 E-value=24 Score=31.67 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=35.6
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhh-ccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKK-nnVavDII~FGe~ 75 (332)
++|+|+-+||--.+++-+..+++.+++ .++.|+++.+.+.
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~ 42 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPET 42 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecccc
Confidence 379999999987889989999999998 9999999998754
No 132
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=53.03 E-value=32 Score=33.86 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHHh-hhcCCc----cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 12 ELNLAAGIQVAQLAL-KHRQNK----KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 12 ~~~~~~gIqiA~LAL-KHRqnK----~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+.||+.+|.+|.--+ +|-.++ ....=||+=-|+.+-+ |.+-|.-.-++|-.++|.+|+|++|...
T Consensus 202 ~gNiLEaINlaln~~~~~~idRdl~rTG~~iivITpG~Gvf~Vd~~ll~~T~~rl~~~gi~~DlIcL~~~P 272 (281)
T PF12257_consen 202 KGNILEAINLALNQFDKHYIDRDLRRTGQSIIVITPGTGVFEVDYDLLRLTTQRLLDNGIGIDLICLSKPP 272 (281)
T ss_pred cccHHHHHHHHhhhcccccccCcccccCceEEEEcCCCceEEECHHHHHHHHHHHHhcCccEEEEEcCCCC
Confidence 467889998874333 222222 2223344555666755 6666677788999999999999999854
No 133
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=52.80 E-value=48 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=35.0
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--||+|. |.+....-.+|.++.+++++.+|. ||.+.. +..+.+..|++..
T Consensus 30 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~--vi~vs~---d~~~~~~~~~~~~ 83 (149)
T cd03018 30 PVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAE--VLGISV---DSPFSLRAWAEEN 83 (149)
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCE--EEEecC---CCHHHHHHHHHhc
Confidence 3466777 444445778889999999988765 555543 3467899998765
No 134
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=52.63 E-value=24 Score=35.24 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=34.9
Q ss_pred ccccceEEEEec-CCCcc---cHHHHHHHHHHhhhccceeeEEEecC
Q 020031 32 KKQQQRIIVFVG-SPIKH---EKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 32 K~~~qRIIvFVG-SPi~~---dek~L~klaKkLKKnnVavDII~FGe 74 (332)
.++.+||++|+. +|... -+..+..|++.|++.+..|.||....
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 367899999987 55532 46789999999999999999998653
No 135
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=51.72 E-value=74 Score=33.53 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=47.2
Q ss_pred cccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHH
Q 020031 5 AGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 84 (332)
Q Consensus 5 H~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~ 84 (332)
-.++.+|-.++..+|+-|.-.++. + ...+.|.|+|+.-=...++..+.+..+. +..++.|..|.||... |...|+
T Consensus 341 ~~l~a~GgT~l~~aL~~a~~~~~~-~-~~~~~~~iillTDG~~~~~~~~~~~~~~-~~~~~ri~tvGiG~~~--n~~lL~ 415 (596)
T TIGR03788 341 AGLQADGGTEMAGALSAALRDDGP-E-SSGALRQVVFLTDGAVGNEDALFQLIRT-KLGDSRLFTVGIGSAP--NSYFMR 415 (596)
T ss_pred hhCCCCCCccHHHHHHHHHHhhcc-c-CCCceeEEEEEeCCCCCCHHHHHHHHHH-hcCCceEEEEEeCCCc--CHHHHH
Confidence 355678888999999866533222 2 1233455555544333455566665544 3346788889999765 555565
Q ss_pred HHHHH
Q 020031 85 ALLAA 89 (332)
Q Consensus 85 ~fi~~ 89 (332)
.+-+.
T Consensus 416 ~lA~~ 420 (596)
T TIGR03788 416 KAAQF 420 (596)
T ss_pred HHHHc
Confidence 55443
No 136
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=51.60 E-value=26 Score=35.09 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=56.0
Q ss_pred cccCccccHHHHHHHHHH--HhhhcCCccccceEEEEecCCCcc---cHHHHHH----HHHHhhhccceeeEEEecCCCC
Q 020031 7 LEIGGELNLAAGIQVAQL--ALKHRQNKKQQQRIIVFVGSPIKH---EKKVLEM----IGRKLKKNSVALDIVNFGEDDE 77 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~L--ALKHRqnK~~~qRIIvFVGSPi~~---dek~L~k----laKkLKKnnVavDII~FGe~~~ 77 (332)
+.|.|..|=+|.-..|-+ +.||+- ...|||+-||||.+-.. .++.+.. |-|-|.+.++++ +|+|--..
T Consensus 132 lpi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~-lisfSRRT- 208 (329)
T COG3660 132 LPINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSF-LISFSRRT- 208 (329)
T ss_pred eeccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceE-EEEeecCC-
Confidence 378899888888877765 789998 88999999999999862 3444433 445666678877 67887655
Q ss_pred CcHHHHHHHHHH
Q 020031 78 GNTEKLEALLAA 89 (332)
Q Consensus 78 ~n~~kL~~fi~~ 89 (332)
.+.+...+.+
T Consensus 209 --p~~~~s~l~~ 218 (329)
T COG3660 209 --PDTVKSILKN 218 (329)
T ss_pred --cHHHHHHHHh
Confidence 4556666554
No 137
>PRK09271 flavodoxin; Provisional
Probab=51.17 E-value=30 Score=30.06 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=31.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+||+|+.+|=-..+++-...|++.|+..++.|++..+.
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~ 38 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETD 38 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecc
Confidence 58999999966678888899999999999887665543
No 138
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=51.12 E-value=1.9e+02 Score=27.25 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=66.8
Q ss_pred ccccCccccHHHHHHHHHHHhhhcCCccc-cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHH
Q 020031 6 GLEIGGELNLAAGIQVAQLALKHRQNKKQ-QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 84 (332)
Q Consensus 6 ~i~i~G~~~~~~gIqiA~LALKHRqnK~~-~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~ 84 (332)
.+..-|..+....|+-+. -+|+..+.. .--.|+||--=-..++++..++-+...+..|..-+|-||+.. -..|+
T Consensus 76 ~~~~~G~t~y~~vm~~v~--~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~---f~fL~ 150 (200)
T PF10138_consen 76 DWGRMGGTNYAPVMEDVL--DHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSN---FGFLE 150 (200)
T ss_pred ccCCCCCcchHHHHHHHH--HHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCc---chHHH
Confidence 333334467766665332 234433222 246899985544468888899999999999999999999876 56666
Q ss_pred HHHHHHhcC--CCceEEEeCCCCc----hhhHHhh
Q 020031 85 ALLAAVNNN--DSSHLVHVPPGPN----ALSDVLL 113 (332)
Q Consensus 85 ~fi~~vN~~--~~Shlv~VP~G~~----~LsD~l~ 113 (332)
+|=+ +.+- ||++|+++..=+. -|+|.|+
T Consensus 151 kLD~-l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL 184 (200)
T PF10138_consen 151 KLDD-LAGRVVDNAGFFAIDDIDELSDEELYDRLL 184 (200)
T ss_pred Hhhc-cCCcccCCcCeEecCCcccCCHHHHHHHHH
Confidence 6655 2222 7999999987442 2555555
No 139
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=50.88 E-value=4.4 Score=38.15 Aligned_cols=73 Identities=15% Similarity=0.313 Sum_probs=42.1
Q ss_pred CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCc---HHHHHHHHHHHhcCCCceEEEeCCCCc
Q 020031 30 QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKLEALLAAVNNNDSSHLVHVPPGPN 106 (332)
Q Consensus 30 qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n---~~kL~~fi~~vN~~~~Shlv~VP~G~~ 106 (332)
.-+.|+||||+|.. .|-.-|..|++.+..|..|-+.+.. +. .+.|..++... .-++|+++-||..
T Consensus 36 ~~~~HkqKl~l~~s--------aMRhfa~~L~~~G~~V~Y~~~~~~~-~~~s~~~~L~~~~~~~---~~~~~~~~~P~d~ 103 (224)
T PF04244_consen 36 YVPHHKQKLVLFFS--------AMRHFADELRAKGFRVHYIELDDPE-NTQSFEDALARALKQH---GIDRLHVMEPGDY 103 (224)
T ss_dssp SS---HHHHHHHHH--------HHHHHHHHHHHTT--EEEE-TT-TT---SSHHHHHHHHHHHH-------EEEE--S-H
T ss_pred cCcccHHHHHHHHH--------HHHHHHHHHHhCCCEEEEEeCCCcc-ccccHHHHHHHHHHHc---CCCEEEEECCCCH
Confidence 45667777776643 3778899999999999999998765 21 45666666554 6789999999987
Q ss_pred hhhHHhhh
Q 020031 107 ALSDVLLS 114 (332)
Q Consensus 107 ~LsD~l~s 114 (332)
.|-..|-+
T Consensus 104 ~l~~~l~~ 111 (224)
T PF04244_consen 104 RLEQRLES 111 (224)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666655
No 140
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.14 E-value=35 Score=25.25 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=32.8
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|.-||. +.....-+.++-.-|.+++|.|..|+.|...
T Consensus 3 ~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 7899999 7766667889999999999999999988764
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=49.63 E-value=2.4e+02 Score=28.97 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHhcH----HHHHHHHHHHH
Q 020031 147 VDPNLDPELALALRVSM----EEERARQEAAA 174 (332)
Q Consensus 147 vDP~~DPELAmALR~Sm----EEEr~RQe~~~ 174 (332)
|+|..-.+||-||+..| +|.++|-++..
T Consensus 404 VnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~ 435 (456)
T TIGR02400 404 VNPYDIDGMADAIARALTMPLEEREERHRAMM 435 (456)
T ss_pred ECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68876667888775544 44444444433
No 142
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=49.62 E-value=88 Score=24.67 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=39.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhcc--ceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 102 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnn--VavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP 102 (332)
||+--||+-..-...+..|+.+|++.. ..|.+ .|=+.. .+-++.-++.+...+-.+++.+|
T Consensus 3 vlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~-afle~~---~p~~~~~l~~l~~~g~~~v~vvP 65 (101)
T cd03416 3 LLVGHGSRDPRAAEALEALAERLRERLPGDEVEL-AFLELA---EPSLAEALDELAAQGATRIVVVP 65 (101)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEE-EEEEcC---CCCHHHHHHHHHHcCCCEEEEEe
Confidence 455668998877889999999998865 33433 343331 12344445554445667888887
No 143
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=48.98 E-value=45 Score=25.20 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=47.0
Q ss_pred cccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 5 AGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 5 H~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+-+++.|...|.+.-.+-....++-.. .-+.|+|-+|.+.. | -..|..+-+++++.++.|.|+..
T Consensus 10 ~ii~l~G~l~~~~~~~~~~~~~~~~~~---~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~ 78 (99)
T cd07043 10 LVVRLSGELDAATAPELREALEELLAE---GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNV 78 (99)
T ss_pred EEEEEeceecccchHHHHHHHHHHHHc---CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcC
Confidence 445788998888877766665444332 13667788888873 2 46778999999999999888776
No 144
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=48.66 E-value=92 Score=30.72 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=37.0
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHH
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~ 89 (332)
....+|+|||.-... .-..|++.+++|++.+ +.+|..|.....-.+.|+.+...
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~--~~lvi~G~g~~~~~~~~~~~~~~ 348 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELG--GQLVILGSGDPEYEEALRELAAR 348 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcC--cEEEEEecCCHHHHHHHHHHHHh
Confidence 567899999986543 4567889999998877 67788887652223445555443
No 145
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=48.54 E-value=1.1e+02 Score=28.85 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 17 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
.|..||+.+++.=.... ..||+||+|+=-. =-+=.-.|+.|+-.+..|+|+..|+......+...++...++.
T Consensus 32 AG~aVa~~i~~~~~~~~-~~~v~vlcG~GnN--GGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~ 104 (203)
T COG0062 32 AGLAVARAILREYPLGR-ARRVLVLCGPGNN--GGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGI 104 (203)
T ss_pred HHHHHHHHHHHHcCccc-CCEEEEEECCCCc--cHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcC
Confidence 46788888887766544 7788888887643 3445668999999999999999998775566777777666653
No 146
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=48.07 E-value=16 Score=36.71 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=33.3
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|||++|++-. .-.-.-...|||.|++++..|+++++|+-.
T Consensus 1 ~mkil~~~~~~-~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~ 41 (406)
T COG1819 1 RMKILFVVCGA-YGHVNPCLALGKELRRRGHEVVFASTGKFK 41 (406)
T ss_pred CceEEEEeccc-cccccchHHHHHHHHhcCCeEEEEeCHHHH
Confidence 47888777776 556666899999999999999999987544
No 147
>PRK13317 pantothenate kinase; Provisional
Probab=47.97 E-value=27 Score=33.71 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=30.9
Q ss_pred HHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhcccee
Q 020031 20 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVAL 67 (332)
Q Consensus 20 qiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVav 67 (332)
.|++||..+++.... +-|+|+|+|+....--...+.+.|+..++.+
T Consensus 209 ~I~~lA~~~ar~~~~--~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~ 254 (277)
T PRK13317 209 VITTLSIQAAREKNI--ENIVYIGSTLTNNPLLQEIIESYTKLRNCTP 254 (277)
T ss_pred HHHHHHHHHHHhcCC--CeEEEECcccccCHHHHHHHHHHHhcCCceE
Confidence 477777665544333 3589999999877654555777887766543
No 148
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.87 E-value=2.2e+02 Score=28.07 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=53.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 113 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~ 113 (332)
-++.++.-..-..+.-=.....|.+++-+|...++.|-+.. ..+.|...|+.+|..+.-| ||-.|--+++-...++
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~ 109 (286)
T PRK14184 32 PGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADT--TQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCL 109 (286)
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHH
Confidence 34544444443445555566788999999999999998766 3567889999999887766 4444644455555555
Q ss_pred hc
Q 020031 114 ST 115 (332)
Q Consensus 114 sS 115 (332)
+.
T Consensus 110 ~~ 111 (286)
T PRK14184 110 EL 111 (286)
T ss_pred hc
Confidence 54
No 149
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=46.29 E-value=1.2e+02 Score=29.87 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHHHhhhcCCc-cccceEEEEecCCCcccHHHHHHHHHH---hhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 13 LNLAAGIQVAQLALKHRQNK-KQQQRIIVFVGSPIKHEKKVLEMIGRK---LKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK-~~~qRIIvFVGSPi~~dek~L~klaKk---LKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
..+.-|+..+.--.-||+++ ..+-||++|-+|- .+...+-+-+-+- -.|-||.|+|++.|... .|+.
T Consensus 129 ~~v~gams~glay~n~~~~e~slkSriliftlsG-~d~~~qYip~mnCiF~Aqk~~ipI~v~~i~g~s--------~fl~ 199 (296)
T COG5242 129 YDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSG-RDRKDQYIPYMNCIFAAQKFGIPISVFSIFGNS--------KFLL 199 (296)
T ss_pred eehhhhhhhhHHHHhhhcccccccceEEEEEecC-chhhhhhchhhhheeehhhcCCceEEEEecCcc--------HHHH
Confidence 33444444444445688887 5789999999976 3333333333221 24779999999987543 4555
Q ss_pred HHhcCCCceEEEeCCCCchhhHHhhhc
Q 020031 89 AVNNNDSSHLVHVPPGPNALSDVLLST 115 (332)
Q Consensus 89 ~vN~~~~Shlv~VP~G~~~LsD~l~sS 115 (332)
+.-...|--+++|..-.. |--.|+++
T Consensus 200 Q~~daTgG~Yl~ve~~eG-llqyL~~~ 225 (296)
T COG5242 200 QCCDATGGDYLTVEDTEG-LLQYLLSL 225 (296)
T ss_pred HHhhccCCeeEeecCchh-HHHHHHHH
Confidence 444334556777755322 56677766
No 150
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=46.24 E-value=61 Score=26.17 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=34.5
Q ss_pred cceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 35 QQRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 35 ~qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
+--||+|. |.+....-..|.++..+|++.+|. ||.+.. ++.+.+.+|++..
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~--~i~is~---d~~~~~~~~~~~~ 77 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAE--VLGVSV---DSPFSHKAWAEKE 77 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCE--EEEEeC---CCHHHHHHHHhcc
Confidence 34466666 223445688899999999877755 555542 3467899998776
No 151
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=45.84 E-value=1.4e+02 Score=29.73 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=36.9
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~ 89 (332)
...+|+|||.-... .-..|++..++|++.+ +.+|.+|.....-.+.|+.++..
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~--~~lvi~G~g~~~~~~~l~~~~~~ 343 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELG--GQLVVLGTGDPELEEALRELAER 343 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcC--cEEEEECCCCHHHHHHHHHHHHH
Confidence 56799999986553 4567888899998776 77888887641223556666543
No 152
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=44.98 E-value=76 Score=30.88 Aligned_cols=94 Identities=22% Similarity=0.257 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHHHhhh--cC----CccccceEEE-EecCCCccc-HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHH
Q 020031 13 LNLAAGIQVAQLALKH--RQ----NKKQQQRIIV-FVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 84 (332)
Q Consensus 13 ~~~~~gIqiA~LALKH--Rq----nK~~~qRIIv-FVGSPi~~d-ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~ 84 (332)
+.|..||-.|.-=.-. |. ++..+-||+| +-+||-... =--+-+..=--+|.+|.||++.+|..+ ...|+
T Consensus 116 s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi~~MN~iFaAqk~~v~IDv~~L~~~~---s~fLq 192 (276)
T PF03850_consen 116 SLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYIPLMNCIFAAQKQKVPIDVCKLGGKD---STFLQ 192 (276)
T ss_pred hhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHHHHHHHHHHHhcCCceeEEEEecCCc---hHHHH
Confidence 5566666554322211 11 2467889999 678886543 233445566668999999999999833 46677
Q ss_pred HHHHHHhcCCCceEEEeCCCCchhhHHhhh
Q 020031 85 ALLAAVNNNDSSHLVHVPPGPNALSDVLLS 114 (332)
Q Consensus 85 ~fi~~vN~~~~Shlv~VP~G~~~LsD~l~s 114 (332)
.-.+..|+ -++.++... -|.-+|++
T Consensus 193 Qa~d~T~G----~y~~~~~~~-~l~q~L~~ 217 (276)
T PF03850_consen 193 QASDITGG----IYLKVSKPE-GLLQYLLT 217 (276)
T ss_pred HHHHHhCc----eeeccCccc-cHHHHHHH
Confidence 66666542 333444432 25555554
No 153
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=43.34 E-value=1.3e+02 Score=29.14 Aligned_cols=100 Identities=12% Similarity=0.183 Sum_probs=64.0
Q ss_pred ccccHHHHHHHHHHHhhhcCCcccc---ceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCC----------
Q 020031 11 GELNLAAGIQVAQLALKHRQNKKQQ---QRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDD---------- 76 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqnK~~~---qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~---------- 76 (332)
+..++..+|..|.-.+..+..+.+. .|+|+.|.-=.. .++.....+++++++++|.|-+|..=...
T Consensus 137 ~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~ 216 (266)
T cd01460 137 DKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKV 216 (266)
T ss_pred CCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccc
Confidence 4468999998888888655222222 478888766653 33344445689999999998888775431
Q ss_pred ---CCcHH-HHHHHHHHHhcCCCceEEEeCC---CCchhhHHhh
Q 020031 77 ---EGNTE-KLEALLAAVNNNDSSHLVHVPP---GPNALSDVLL 113 (332)
Q Consensus 77 ---~~n~~-kL~~fi~~vN~~~~Shlv~VP~---G~~~LsD~l~ 113 (332)
..+.. +|+.|.+.. .--++|.|.- =|+.|+|+|-
T Consensus 217 ~~~~~~~~~~l~~Yl~~f---pfpYy~~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 217 VSFKNDKSGVITPYLDEF---PFPYYVIVRDLNQLPSVLSDALR 257 (266)
T ss_pred cccCCCCccHHHHHHhcC---CCCeEEEecChhHhHHHHHHHHH
Confidence 01112 777777766 5555665543 2778888874
No 154
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=43.18 E-value=42 Score=30.50 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=30.6
Q ss_pred ceEEEEecCCC-cccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPI-KHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi-~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
|||+.|..++. .--+.....+++.|++.++.|.|+++...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 57888877776 34577788888888888888888887543
No 155
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=43.07 E-value=2.8e+02 Score=25.89 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=37.3
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.+...|+|||.-... .-..|++..++|++.+-.+.++.+|... ....|+.++...+
T Consensus 202 ~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~ 258 (372)
T cd04949 202 RKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGD--EEEKLKELIEELG 258 (372)
T ss_pred cCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCc--hHHHHHHHHHHcC
Confidence 345578999975432 4457788888888776666666677654 2466777776554
No 156
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=42.99 E-value=26 Score=36.42 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=30.3
Q ss_pred EEEecCCCc-----ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 39 IVFVGSPIK-----HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 39 IvFVGSPi~-----~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
++|+++|.. .++++|+.||.-+||+|+ |++-+ +..+.|+-
T Consensus 175 ~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~----lvisD------evYe~~v~ 219 (420)
T KOG0257|consen 175 AIILNTPHNPTGKVFSREELERIAELCKKHGL----LVISD------EVYEWLVY 219 (420)
T ss_pred EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCE----EEEEh------hHhHHHhh
Confidence 567788886 479999999999999993 33322 44777776
No 157
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.67 E-value=3.4e+02 Score=26.72 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=53.2
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 114 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~s 114 (332)
++.++.-.+-..+.-=.....|.+++-+|.+.++.|.+.. ..+.|...|+.+|.++.-| ||-.|--+++-...++.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~ 111 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETI--SQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILL 111 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHh
Confidence 4544444443444444455678899999999999998776 3467888999999888766 66666545655555554
Q ss_pred c
Q 020031 115 T 115 (332)
Q Consensus 115 S 115 (332)
.
T Consensus 112 ~ 112 (284)
T PRK14179 112 A 112 (284)
T ss_pred c
Confidence 4
No 158
>PTZ00256 glutathione peroxidase; Provisional
Probab=42.26 E-value=86 Score=27.72 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=31.6
Q ss_pred cCCCcccHHHHHHHHHHhhhccceeeEEE---ecCCCCCcHHHHHHHHHH
Q 020031 43 GSPIKHEKKVLEMIGRKLKKNSVALDIVN---FGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 43 GSPi~~dek~L~klaKkLKKnnVavDII~---FGe~~~~n~~kL~~fi~~ 89 (332)
|.|....-..|.++.+++++.+|.|=-|+ |++......+....|+..
T Consensus 53 Cp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~ 102 (183)
T PTZ00256 53 CGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQK 102 (183)
T ss_pred CCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHH
Confidence 34555677789999999998887654444 344332355788888853
No 159
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=42.12 E-value=1.2e+02 Score=24.57 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=37.8
Q ss_pred cceEEEEecCCCc----ccHHHHHHHHHHhhhcc---ceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 35 QQRIIVFVGSPIK----HEKKVLEMIGRKLKKNS---VALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 35 ~qRIIvFVGSPi~----~dek~L~klaKkLKKnn---VavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
+-.||+|.++-.. ..-..|.++..++++++ |.|=.|++-... ++.+.+.+|++..+
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~-d~~~~~~~~~~~~~ 85 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPER-DTPEVLKAYAKAFG 85 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCC-CCHHHHHHHHHHhC
Confidence 3467777655443 35667888888898875 655555554332 46789999999874
No 160
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=41.96 E-value=2.1e+02 Score=24.01 Aligned_cols=72 Identities=22% Similarity=0.348 Sum_probs=45.5
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhh
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 113 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~ 113 (332)
|+.||. -....-=.....|.+++-+|.+.++.|.+.. ..+.|...|+.+|..++-| ||-.|--+++-...|+
T Consensus 34 ii~vg~-d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~lN~D~~V~GIlvq~PLP~~i~~~~i~ 107 (117)
T PF00763_consen 34 IILVGD-DPASISYVRSKQKAAEKLGIEFELIELPEDI--SEEELLELIEKLNEDPSVHGILVQLPLPKHIDERKIL 107 (117)
T ss_dssp EEEES---HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS--SHHHHHHHHHHHHH-TT-SEEEEESSSSTTSHHHHHH
T ss_pred EEecCC-ChhHHHHHHHHHHHHHHcCCceEEEECCCCc--CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCccHHHHH
Confidence 444443 3445555677788899999999999998766 5788999999999888665 4443443343333443
No 161
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=41.20 E-value=2.1e+02 Score=29.06 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=31.8
Q ss_pred ccceEEEEecCCCcc--cHHHHHHHHHHhhhccce----eeEEEecCCCC----C---cHHHHHHHHHHHhcC
Q 020031 34 QQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVA----LDIVNFGEDDE----G---NTEKLEALLAAVNNN 93 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVa----vDII~FGe~~~----~---n~~kL~~fi~~vN~~ 93 (332)
...+||+|||. +.. .-..|++..++|++.+-. |-+|..|.... . -.+.++.++..+|..
T Consensus 262 ~~~~~il~vgR-l~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~ 333 (460)
T cd03788 262 GGRKLIVGVDR-LDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGK 333 (460)
T ss_pred CCCEEEEEecC-ccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhc
Confidence 35689999987 433 334556666666554332 44555543210 1 134556666677753
No 162
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.04 E-value=1.3e+02 Score=22.60 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
.......++++.|++.++.|++-..+ .++..=+...+..+-.+++.|-.
T Consensus 12 ~~~~~a~~~~~~Lr~~g~~v~~d~~~-------~~~~~~~~~a~~~g~~~~iiig~ 60 (91)
T cd00860 12 EHLDYAKEVAKKLSDAGIRVEVDLRN-------EKLGKKIREAQLQKIPYILVVGD 60 (91)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCC-------CCHHHHHHHHHHcCCCEEEEECc
Confidence 45677899999999999999874321 13444444445555667777753
No 163
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=40.41 E-value=1.9e+02 Score=30.84 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=60.5
Q ss_pred HhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 25 ALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 25 ALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
-+.++--.+-.-++.++.||. -|..-+.+.++.|++-+|..++-..+-+- +.++|..|+......+-.-||.+--+
T Consensus 400 ~~~~~~~~~~~~~v~i~~gs~--sd~~~~~~~~~~l~~~g~~~~~~v~sahr--~~~~~~~~~~~~~~~~~~v~i~~ag~ 475 (577)
T PLN02948 400 SADPDALPKGTPLVGIIMGSD--SDLPTMKDAAEILDSFGVPYEVTIVSAHR--TPERMFSYARSAHSRGLQVIIAGAGG 475 (577)
T ss_pred ccCCCCCCCCCCeEEEEECch--hhHHHHHHHHHHHHHcCCCeEEEEECCcc--CHHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 334454455667799999996 57778999999999999999988888655 78999999998865443344444333
Q ss_pred CchhhHHhh
Q 020031 105 PNALSDVLL 113 (332)
Q Consensus 105 ~~~LsD~l~ 113 (332)
..-|.=++.
T Consensus 476 ~~~l~~~~a 484 (577)
T PLN02948 476 AAHLPGMVA 484 (577)
T ss_pred cccchHHHh
Confidence 333554443
No 164
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=40.19 E-value=1.4e+02 Score=23.42 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=36.5
Q ss_pred cceEEEEecCCC-c---ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 35 QQRIIVFVGSPI-K---HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 35 ~qRIIvFVGSPi-~---~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
+--||+|..+.- . ..-.+|.++.+++++.||.|=.|+. +..+.+..|++..+
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~-----d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST-----DDPEEIKQFLEEYG 81 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES-----SSHHHHHHHHHHHT
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc-----ccccchhhhhhhhc
Confidence 456777777723 2 3456678888888988887777766 23457888998885
No 165
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=40.19 E-value=1.1e+02 Score=30.08 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=38.4
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEe
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 101 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~V 101 (332)
.++=|+|.+.-....++..+++++|.+.++.|++ .+.. .+|+.-+...+...-.++|.|
T Consensus 321 ~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~------~~l~k~~~~a~~~g~~~~i~i 379 (397)
T TIGR00442 321 SSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG------RKLKKQLKYADKLGARFAVIL 379 (397)
T ss_pred CCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC------CCHHHHHHHHHHcCCCEEEEE
Confidence 4444555554345667789999999999999986 4432 225556666665555566665
No 166
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=39.91 E-value=43 Score=23.80 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=26.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+|-++|- .....-+.++.+.|.+++|.||+|.-+
T Consensus 3 ~v~v~~~--~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 3 KITLRGV--PDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred EEEECCC--CCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 4556664 345667889999999999999999865
No 167
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=39.82 E-value=19 Score=35.66 Aligned_cols=35 Identities=37% Similarity=0.499 Sum_probs=27.9
Q ss_pred CchhHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhcccCC
Q 020031 219 HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDG 265 (332)
Q Consensus 219 ~ed~~L~qALamS~~~~~~~~~d~~~~~~~~Eee~ia~AlqmSmq~~ 265 (332)
.++.-|++|++||.++. ..||+.+..|++.|||+.
T Consensus 217 q~e~d~a~a~a~s~~et------------~~ede~lrsaie~s~~~~ 251 (315)
T KOG2935|consen 217 QDEEDLARALALSRQET------------EMEDEDLRSAIELSMQSA 251 (315)
T ss_pred cchHHHHHHHHHHHhhh------------hcccHHHHHHHHhhhhhh
Confidence 46778999999997653 346679999999999954
No 168
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.39 E-value=39 Score=27.84 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=43.7
Q ss_pred hhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCc
Q 020031 27 KHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPN 106 (332)
Q Consensus 27 KHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~ 106 (332)
.|..........++|+-|+-..+.+.+.++++.+|++++ .||.+.... .+ .....+.+.+|....
T Consensus 52 ~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~--~vi~it~~~-~s------------~~~~d~~i~~~~~~~ 116 (153)
T cd05009 52 KHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARGA--KVIVITDDG-DA------------KDLADVVIRVPATVE 116 (153)
T ss_pred ccChhhhccCCCcEEEEecCChhHHHHHHHHHHHHHcCC--EEEEEecCC-cc------------cccCCeEEECCCCch
Confidence 455556566666677777766777889999999999875 566665443 21 123456677776554
Q ss_pred hhh
Q 020031 107 ALS 109 (332)
Q Consensus 107 ~Ls 109 (332)
.++
T Consensus 117 ~~~ 119 (153)
T cd05009 117 ELS 119 (153)
T ss_pred hHH
Confidence 333
No 169
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.32 E-value=52 Score=22.31 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=26.7
Q ss_pred EEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 40 VFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 40 vFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
-++|- .....-+.++...|.+++|.||.|+.+...
T Consensus 4 ~v~~~--~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~ 38 (61)
T cd04891 4 TIKGV--PDKPGVAAKIFSALAEAGINVDMIVQSVSR 38 (61)
T ss_pred EEecC--CCCCcHHHHHHHHHHHcCCcEEEEEEcCCC
Confidence 34664 344567889999999999999999887533
No 170
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=39.26 E-value=1.9e+02 Score=25.86 Aligned_cols=83 Identities=12% Similarity=0.226 Sum_probs=42.6
Q ss_pred cccceEEEEecCCCc---ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhh
Q 020031 33 KQQQRIIVFVGSPIK---HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALS 109 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~---~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~Ls 109 (332)
..+..|+++.|+--. -..+....|+++|++.+ +.||.||-.. +..+..++.+..+-..+.+.+.... .|.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 175 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPE----EQEKEIADQIAAGLQNPVINLAGKT-SLR 175 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSH----HHHHHHHHHHHTTHTTTTEEETTTS--HH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccch----HHHHHHHHHHHHhcccceEeecCCC-CHH
Confidence 345678888887543 26778899999999998 8899999766 2233333333322122255554433 355
Q ss_pred H---HhhhcCcccCCC
Q 020031 110 D---VLLSTPIFTGDG 122 (332)
Q Consensus 110 D---~l~sSpI~~ge~ 122 (332)
+ .|-.+-++-+-+
T Consensus 176 e~~ali~~a~~~I~~D 191 (247)
T PF01075_consen 176 ELAALISRADLVIGND 191 (247)
T ss_dssp HHHHHHHTSSEEEEES
T ss_pred HHHHHHhcCCEEEecC
Confidence 4 444444544433
No 171
>PRK08105 flavodoxin; Provisional
Probab=39.10 E-value=43 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=33.7
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+|+||.||=--.++.-..+|+++|+..++.|.++...
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~ 39 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDP 39 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechh
Confidence 7999999998889999999999999999999988764
No 172
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=39.06 E-value=2.2e+02 Score=23.45 Aligned_cols=138 Identities=27% Similarity=0.351 Sum_probs=70.7
Q ss_pred ccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
|......++....-|+++-..+....-.++|+| -......+..+.+++. +.-.|..+|... .+.|..++..
T Consensus 22 g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G--~~~~~~~~~~~~~~~~---~~~~i~~~~~~~---~~~l~~~~~~- 92 (172)
T PF00534_consen 22 GRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVG--DGEYKKELKNLIEKLN---LKENIIFLGYVP---DDELDELYKS- 92 (172)
T ss_dssp SESSGGGTHHHHHHHHHHHHHHHHTTEEEEEES--HCCHHHHHHHHHHHTT---CGTTEEEEESHS---HHHHHHHHHH-
T ss_pred ecCccccCHHHHHHHHHHHHhhcCCCeEEEEEc--cccccccccccccccc---cccccccccccc---cccccccccc-
Confidence 333333444444333333221223445677888 2234555666666553 333455666544 4567777765
Q ss_pred hcCCCceEEEeCC----CCchhhHHhhhc-CcccCCCCCCCchhHhHHhhhcCCCCCCcccCCCCCCHHHHHHHHhcHHH
Q 020031 91 NNNDSSHLVHVPP----GPNALSDVLLST-PIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEE 165 (332)
Q Consensus 91 N~~~~Shlv~VP~----G~~~LsD~l~sS-pI~~ge~~~g~~~~~~~~~~~~~~~~~fefGvDP~~DPELAmALR~SmEE 165 (332)
|+++.+|. .+..+.+++..- |++.... +++. --...+..++= +++..--+|+-+|+--+..
T Consensus 93 -----~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~---~~~~----e~~~~~~~g~~--~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 93 -----SDIFVSPSRNEGFGLSLLEAMACGCPVIASDI---GGNN----EIINDGVNGFL--FDPNDIEELADAIEKLLND 158 (172)
T ss_dssp -----TSEEEE-BSSBSS-HHHHHHHHTT-EEEEESS---THHH----HHSGTTTSEEE--ESTTSHHHHHHHHHHHHHH
T ss_pred -----ceeccccccccccccccccccccccceeeccc---cCCc----eeeccccceEE--eCCCCHHHHHHHHHHHHCC
Confidence 77888773 466677777654 4554322 1110 00011112222 4677667899888877777
Q ss_pred HHHHHH
Q 020031 166 ERARQE 171 (332)
Q Consensus 166 Er~RQe 171 (332)
...|+.
T Consensus 159 ~~~~~~ 164 (172)
T PF00534_consen 159 PELRQK 164 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 644443
No 173
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=38.98 E-value=84 Score=27.77 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecC-------CCc----ccHHHHH----HHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-------PIK----HEKKVLE----MIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS-------Pi~----~dek~L~----klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+.+.++++-...+.. +-|+|++| |.. ..+--+. .+++.++..+|.|-+|..|-..
T Consensus 107 ~n~~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~ 184 (254)
T TIGR02415 107 VNVKGVLFGIQAAARQFKKQGHG-GKIINAASIAGHEGNPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVK 184 (254)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCC-eEEEEecchhhcCCCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccc
Confidence 44445556666666654333333 34567666 211 1233333 3455566668888888888654
No 174
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=38.97 E-value=47 Score=31.51 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=32.0
Q ss_pred eEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
||+.|++++-. --+.-+..+++.|.+.++.||||++....
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~ 41 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDP 41 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCCh
Confidence 57777777643 35778889999999999999999996643
No 175
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=38.85 E-value=1.1e+02 Score=25.17 Aligned_cols=38 Identities=8% Similarity=-0.111 Sum_probs=19.1
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+||+|-+... +.....++++.+|+.+=.+-||..|-..
T Consensus 41 div~~S~~~~--~~~~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 41 DVVGISLMTS--AIYEALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred CEEEEeeccc--cHHHHHHHHHHHHHHCCCCEEEECCcch
Confidence 5555554222 2224555555555555555555555544
No 176
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.83 E-value=77 Score=35.20 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhcCCccccceEEEEecCCCc----------------------cc--------HHHHHHHHHHhhhccce
Q 020031 17 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIK----------------------HE--------KKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~----------------------~d--------ek~L~klaKkLKKnnVa 66 (332)
+||.||..-|--. -.+.--|||+|+|.|.. .+ .|-..+||+++-.++..
T Consensus 253 ~Al~iA~~Ll~~c-~p~~g~rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghv 331 (745)
T KOG1986|consen 253 VALSIASGLLEGC-FPNTGARIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHV 331 (745)
T ss_pred HHHHHHHHHhccc-CCCCcceEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCce
Confidence 4666665555444 47788899999999732 11 24458899999999999
Q ss_pred eeEEEecCCC
Q 020031 67 LDIVNFGEDD 76 (332)
Q Consensus 67 vDII~FGe~~ 76 (332)
|||..=+=..
T Consensus 332 lDifa~~lDQ 341 (745)
T KOG1986|consen 332 LDIFAAALDQ 341 (745)
T ss_pred Eeeeeeeccc
Confidence 9998765433
No 177
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.45 E-value=3.8e+02 Score=26.57 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=51.8
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 114 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~s 114 (332)
...++.-.+-..+.--.....|.+++-+|.+.++.|-+.. ..+.|...|+.+|..++-| ||-.|--.++-...++.
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~ 111 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTI--HTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILS 111 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444433343444444556788999999999999998776 3466889999999887665 55556434555555555
Q ss_pred c
Q 020031 115 T 115 (332)
Q Consensus 115 S 115 (332)
.
T Consensus 112 ~ 112 (288)
T PRK14171 112 A 112 (288)
T ss_pred c
Confidence 4
No 178
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=38.24 E-value=2.8e+02 Score=27.29 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=33.7
Q ss_pred ceEEEEecCCCcc-cHHHHHHHHHHhhhcc--ceeeEEEecCCCCCcHHHHHHHHHH
Q 020031 36 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 36 qRIIvFVGSPi~~-dek~L~klaKkLKKnn--VavDII~FGe~~~~n~~kL~~fi~~ 89 (332)
...|+|+|.=... .-..|++..++|++.. +.+-++.+|... ..+.|+.++..
T Consensus 230 ~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~ 284 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAES 284 (407)
T ss_pred CEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHh
Confidence 3456777754332 3466888888888875 556667788755 34667777763
No 179
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.24 E-value=3.6e+02 Score=26.61 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=53.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 113 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~ 113 (332)
-++.++.-.+-..+.-=.....|.+++-+|.+.++.|.+.. ..+.|.+.|+.+|..+.-| ||-.|--+++-.+.++
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~ 109 (285)
T PRK14191 32 PKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENT--TEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVL 109 (285)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 34555544444455555667788899999999999998776 3567888899999888777 4444543454445555
Q ss_pred hc
Q 020031 114 ST 115 (332)
Q Consensus 114 sS 115 (332)
..
T Consensus 110 ~~ 111 (285)
T PRK14191 110 EA 111 (285)
T ss_pred hc
Confidence 44
No 180
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=38.24 E-value=94 Score=24.26 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=42.5
Q ss_pred cccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEE
Q 020031 5 AGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 5 H~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~ 71 (332)
.-+.+.|.++|.++=.+-......-.. ...+.|+|-.|.+.. | -..|..+.+++++.++.+-|+.
T Consensus 14 ~vi~~~G~l~~~~~~~~~~~l~~~~~~--~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~ 82 (108)
T TIGR00377 14 VIVRLSGELDAHTAPLLREKVTPAAER--TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVS 82 (108)
T ss_pred EEEEEecccccccHHHHHHHHHHHHHh--cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEe
Confidence 346788988887755544433222221 256678888888863 2 5778999999999887655554
No 181
>PRK06123 short chain dehydrogenase; Provisional
Probab=38.20 E-value=98 Score=27.23 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHhhhcCCc-cccceEEEEecCCCc------------ccHHHHH----HHHHHhhhccceeeEEEecCC
Q 020031 13 LNLAAGIQVAQLALKHRQNK-KQQQRIIVFVGSPIK------------HEKKVLE----MIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK-~~~qRIIvFVGSPi~------------~dek~L~----klaKkLKKnnVavDII~FGe~ 75 (332)
+++...+.+.+.++++...+ .-+..-|+|++|.-. ..+.-+. .+++.|++.||.|=+|..|..
T Consensus 111 ~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v 190 (248)
T PRK06123 111 TNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVI 190 (248)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcc
Confidence 45555666677777764321 112345666666311 1233333 367777888999999998876
Q ss_pred C
Q 020031 76 D 76 (332)
Q Consensus 76 ~ 76 (332)
.
T Consensus 191 ~ 191 (248)
T PRK06123 191 Y 191 (248)
T ss_pred c
Confidence 5
No 182
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=37.90 E-value=83 Score=23.54 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=33.7
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.-+|..||..+. ...-+.++-.-|.+++|.|-.|+.|...
T Consensus 2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 347999999995 5667789999999999999999998754
No 183
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.68 E-value=4.2e+02 Score=26.26 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=55.4
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 113 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~ 113 (332)
-.+.++.-.+-..+.-=.....|..++-+|.+.++.|.+.. ..+.|.+.|+.+|..++-| ||-.|--+++-.+.++
T Consensus 39 P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~ 116 (287)
T PRK14176 39 PGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADT--TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAM 116 (287)
T ss_pred CeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 35555554444566666677788899999999999998776 3567888999999877655 5555654565556666
Q ss_pred hc
Q 020031 114 ST 115 (332)
Q Consensus 114 sS 115 (332)
+.
T Consensus 117 ~~ 118 (287)
T PRK14176 117 EA 118 (287)
T ss_pred hc
Confidence 55
No 184
>PRK10565 putative carbohydrate kinase; Provisional
Probab=37.67 E-value=1.6e+02 Score=30.92 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 18 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 18 gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|..||...+++ ..+ ..||+||+|+=-. =-+=.-+|+.|...++.|.|+.+|...
T Consensus 46 g~~va~~i~~~-~~~--~~~v~vl~G~GNN--GGDG~v~AR~L~~~G~~V~v~~~~~~~ 99 (508)
T PRK10565 46 GEAAFQVARSA-YPD--ARHWLVLCGHGNN--GGDGYVVARLAQAAGIDVTLLAQESDK 99 (508)
T ss_pred HHHHHHHHHHh-cCC--CCeEEEEEcCCCc--hHHHHHHHHHHHHCCCceEEEEECCcc
Confidence 45666655442 222 4578888887643 333478999999999999999998654
No 185
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=37.67 E-value=1.2e+02 Score=25.23 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=39.5
Q ss_pred EEEecCCCccc------HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 39 IVFVGSPIKHE------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 39 IvFVGSPi~~d------ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
|+|+|+=|..- .---..|+++|++..-.+.|+|+|-....-...+..|-..+.. .+..+|+|--|.
T Consensus 3 i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~-~~pd~v~i~~G~ 74 (177)
T cd01822 3 ILALGDSLTAGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLAQ-HKPDLVILELGG 74 (177)
T ss_pred EEEEccccccCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHHh-cCCCEEEEeccC
Confidence 56778877521 1223567888888888899999998763333444444444432 233455555554
No 186
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=37.62 E-value=99 Score=30.13 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccce--eeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 15 LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA--LDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 15 ~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVa--vDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
+.+|.-.|++..|+-.. +-|..||.+ ...++|..++-.+-.+.-+ ||.|.+|.....+-++|...+..+..
T Consensus 75 ~TS~~at~~~l~~~~~~-----~kv~viG~~--~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~ 147 (269)
T COG0647 75 VTSGDATADYLAKQKPG-----KKVYVIGEE--GLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAA 147 (269)
T ss_pred ecHHHHHHHHHHhhCCC-----CEEEEECCc--chHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHc
Confidence 44555566666554332 557777844 3566788888777765544 89999999887899999999999975
Q ss_pred CCCceEEEeCCC
Q 020031 93 NDSSHLVHVPPG 104 (332)
Q Consensus 93 ~~~Shlv~VP~G 104 (332)
+ .+||+--|-
T Consensus 148 g--~~fI~tNpD 157 (269)
T COG0647 148 G--APFIATNPD 157 (269)
T ss_pred C--CcEEEeCCC
Confidence 5 777766553
No 187
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=37.52 E-value=1.1e+02 Score=31.67 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=43.8
Q ss_pred CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 30 QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 30 qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
+++... +|.+|-.|=-..++.....||..|+|.+|.|.+++|-..+ .+.+++.|
T Consensus 242 ~~~~~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~------~~eI~~~i 295 (388)
T COG0426 242 EGQPKG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDAD------PSEIVEEI 295 (388)
T ss_pred ccCCcc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCC------HHHHHHHH
Confidence 444334 8999999988899999999999999999999999998765 44455555
No 188
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=37.13 E-value=1e+02 Score=24.26 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=46.7
Q ss_pred ccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 6 GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 6 ~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
-+++.|...|.++=.+-...+....+ ...|.|++=+|-+.. | -..|+.+.+++++.++.+=+++-
T Consensus 11 ii~~~G~l~f~~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~ 79 (100)
T cd06844 11 VVRLEGELDHHSVEQFKEELLHNITN--VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGI 79 (100)
T ss_pred EEEEEEEecHhhHHHHHHHHHHHHHh--CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 35788999999887776654433321 245778888888863 3 57789999999999977766654
No 189
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=37.09 E-value=1.7e+02 Score=24.16 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=36.4
Q ss_pred EEecCCCcccHHHHHHHHHHhhhcc--ceee--EEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeC
Q 020031 40 VFVGSPIKHEKKVLEMIGRKLKKNS--VALD--IVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 102 (332)
Q Consensus 40 vFVGSPi~~dek~L~klaKkLKKnn--VavD--II~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP 102 (332)
+=-||+-......+.+++..|++.. ..|. ++.|++.. |..-++.+-..+-.+++.+|
T Consensus 7 v~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~------l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 7 VGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPT------IPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred EeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCC------HHHHHHHHHHcCCCEEEEEc
Confidence 3346887777789999999998743 2333 33344433 55555554444567888887
No 190
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.81 E-value=3.7e+02 Score=26.73 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=55.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 113 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~ 113 (332)
-+++++.-.+-..+.-=.....|..++-+|...++.|.+.. ..+.|...|+.+|..+.-| ||-.|--+++-.+.++
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~ 111 (297)
T PRK14168 34 PGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDI--TEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVL 111 (297)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 34555554444455555566788899999999999998776 3566888999999877655 5555654566666666
Q ss_pred hc
Q 020031 114 ST 115 (332)
Q Consensus 114 sS 115 (332)
..
T Consensus 112 ~~ 113 (297)
T PRK14168 112 NA 113 (297)
T ss_pred hc
Confidence 65
No 191
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=36.66 E-value=74 Score=33.22 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=52.4
Q ss_pred CcccccCcccc----HHHHHHHHHHHhhhcCCccccceEEEEecCCCc--------------------------------
Q 020031 4 DAGLEIGGELN----LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-------------------------------- 47 (332)
Q Consensus 4 lH~i~i~G~~~----~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-------------------------------- 47 (332)
+.+.+|+|+.+ -..||..|..--++---++...|||||+.---.
T Consensus 194 V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~ 273 (423)
T smart00187 194 VKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTT 273 (423)
T ss_pred HhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceeeEecCCCCcceeCCCCCcCccCc
Confidence 34567888888 355665555555555556678999999853211
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
.|=-.+-.|+++|++|||.+=+-+=.+.. .--++|..||.
T Consensus 274 ~DYPSi~ql~~kL~e~nI~~IFAVT~~~~-~~Y~~Ls~lip 313 (423)
T smart00187 274 QDYPSIGQLNQKLAENNINPIFAVTKKQV-SLYKELSALIP 313 (423)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEEcccch-hHHHHHHHhcC
Confidence 12226789999999999976443333333 33455666654
No 192
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.48 E-value=4.3e+02 Score=26.10 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=58.5
Q ss_pred hhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCC
Q 020031 26 LKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPP 103 (332)
Q Consensus 26 LKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~ 103 (332)
||+|..+ +-++.++.-.+-..+.-=.....|.+++-+|.+.++.|-+.. ..+.|.+.|+.+|.+++-| ||-.|-
T Consensus 26 l~~~~~~--~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--s~~el~~~I~~lN~D~~V~GIlvqlPL 101 (284)
T PRK14177 26 RKTKNKR--IPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQT--TTEELLGVIDKLNLDPNVDGILLQHPV 101 (284)
T ss_pred HHhcCCC--CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCeEEEcCCC
Confidence 4554332 235555554444556666677789999999999999998765 3577889999999887766 444464
Q ss_pred CCchhhHHhhhc
Q 020031 104 GPNALSDVLLST 115 (332)
Q Consensus 104 G~~~LsD~l~sS 115 (332)
-.++-...++..
T Consensus 102 p~~i~~~~i~~~ 113 (284)
T PRK14177 102 PSQIDERAAFDR 113 (284)
T ss_pred CCCCCHHHHHhc
Confidence 445556666654
No 193
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=36.32 E-value=2.1e+02 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=20.6
Q ss_pred eEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecC
Q 020031 37 RIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 37 RIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe 74 (332)
||++|+|++-.. ....+.-.-+-|++.++.++-+.+|.
T Consensus 122 ~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~ 160 (271)
T cd06314 122 KVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVDTRGDE 160 (271)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEEEecCc
Confidence 566677654322 33444445555666676655444443
No 194
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.19 E-value=2.1e+02 Score=27.36 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=43.5
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
.+.+||+|+|-|=.--.-.+.+||..|++.+-.|-||..----....+-|..+.+..+ -.++....++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~----i~~~~~~~~~ 137 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG----VDVIKQKEGA 137 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC----eEEEeCCCCC
Confidence 4579999997443334456899999999998888777642111123566777777663 4444444443
No 195
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=35.87 E-value=60 Score=32.18 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=22.4
Q ss_pred ccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 32 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
+.++++||.|+|+|=.--.--+.+|.++|++.++.|-+|=
T Consensus 201 ~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 201 TTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred cCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4445666666666544333334666666666666555554
No 196
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=35.63 E-value=1.2e+02 Score=23.66 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=40.7
Q ss_pred ceEEEEecCCCccc--HHHHHHHHHHhhhcc---ceeeEEEecCCCCCc-----------HHHHHHHHHHHhcCCCceEE
Q 020031 36 QRIIVFVGSPIKHE--KKVLEMIGRKLKKNS---VALDIVNFGEDDEGN-----------TEKLEALLAAVNNNDSSHLV 99 (332)
Q Consensus 36 qRIIvFVGSPi~~d--ek~L~klaKkLKKnn---VavDII~FGe~~~~n-----------~~kL~~fi~~vN~~~~Shlv 99 (332)
|++++.+-||...+ ...-..+++-+...+ ..|-||.+|+.. .- ...+..++..+-..++-.++
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv-~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~ 79 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGV-KLALKDQKPNPEGDPPLQELLKELKEAGGVKIY 79 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGG-GGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEE
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHH-HHHHhcccccccccccHHHHHHHHHhcCCcEEE
Confidence 45666666555432 466667777777777 888899999844 22 23366666666655556777
Q ss_pred EeCCC
Q 020031 100 HVPPG 104 (332)
Q Consensus 100 ~VP~G 104 (332)
.|..+
T Consensus 80 ~C~~~ 84 (122)
T PF02635_consen 80 VCETC 84 (122)
T ss_dssp EEHHH
T ss_pred EcHHH
Confidence 77653
No 197
>PRK09739 hypothetical protein; Provisional
Probab=34.95 E-value=69 Score=28.58 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=32.7
Q ss_pred ceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
+||++..|||-.. +..-+..+.+.|+..+..|+++...+.
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~ 45 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRS 45 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhh
Confidence 6899999999764 466677788889988999999987753
No 198
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=34.94 E-value=1.5e+02 Score=28.97 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=40.9
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
+|+++..+.-+. . ....++-+.|++.+|.++++.|+.+ ...+.+...++.+....-..+|-|=-|
T Consensus 23 ~~~liv~~~~~~-~-~~~~~v~~~l~~~~i~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 87 (349)
T cd08550 23 SKVAVVGGKTVL-K-KSRPRFEAALAKSIIVVDVIVFGGE--CSTEEVVKALCGAEEQEADVIIGVGGG 87 (349)
T ss_pred CeEEEEEChHHH-H-HHHHHHHHHHHhcCCeeEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 455554443332 2 5577888889999998888888643 245666677776665444555555444
No 199
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=34.70 E-value=47 Score=26.01 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=33.4
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhcccee---eEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVAL---DIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVav---DII~FGe~~ 76 (332)
-|=+|||...+.+-......+|+.|.+++++| |..=+|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 47888888888888788999999999999876 555567655
No 200
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=34.58 E-value=3.9e+02 Score=28.16 Aligned_cols=141 Identities=19% Similarity=0.175 Sum_probs=75.3
Q ss_pred cceEEEEecC--CCcccHHHHHHHHHHhhhc-----cceeeEEEecCCCC-----CcHHHHHHHHHHHhcC----CCceE
Q 020031 35 QQRIIVFVGS--PIKHEKKVLEMIGRKLKKN-----SVALDIVNFGEDDE-----GNTEKLEALLAAVNNN----DSSHL 98 (332)
Q Consensus 35 ~qRIIvFVGS--Pi~~dek~L~klaKkLKKn-----nVavDII~FGe~~~-----~n~~kL~~fi~~vN~~----~~Shl 98 (332)
.++||++|+- +.+-=..-|.-+.+-|+++ +|.+=+|..+.... +-...|+.++..+|+. +-..+
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv 363 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPL 363 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccE
Confidence 4679999984 3333344456666667764 35555555553220 1256778888888875 23444
Q ss_pred EEeCCC-C-------chhhHHhhhcCcccCCCCCCCchhHhHH-----hh-----hcCCCCCC--cccCCCCCCHHHH--
Q 020031 99 VHVPPG-P-------NALSDVLLSTPIFTGDGEGGSGFAAAAA-----AA-----AASGASGY--EFGVDPNLDPELA-- 156 (332)
Q Consensus 99 v~VP~G-~-------~~LsD~l~sSpI~~ge~~~g~~~~~~~~-----~~-----~~~~~~~f--efGvDP~~DPELA-- 156 (332)
+.+... + -.++|+++-+|+--| +.=-....... |. -+|....+ -+=|||..-.++|
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDG--mNLVa~Eyva~~~~~~GvLILSefaGaa~~l~~AllVNP~d~~~~A~a 441 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDG--LNLVAKEYVAAQGLLDGVLVLSEFAGAAVELKGALLTNPYDPVRMDET 441 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccc--cCcchhhHHhhhcCCCCCEEEeccccchhhcCCCEEECCCCHHHHHHH
Confidence 544332 1 125688888888433 21000000000 00 00011111 1238998655655
Q ss_pred --HHHHhcHHHHHHHHHHHHHHH
Q 020031 157 --LALRVSMEEERARQEAAAKRA 177 (332)
Q Consensus 157 --mALR~SmEEEr~RQe~~~~~~ 177 (332)
.||.|+.+|.++|-++..+.-
T Consensus 442 i~~AL~m~~~Er~~R~~~l~~~v 464 (487)
T TIGR02398 442 IYVALAMPKAEQQARMREMFDAV 464 (487)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 577888888888877766543
No 201
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=34.57 E-value=1.1e+02 Score=29.11 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhcC-----Ccc-ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 17 AGIQVAQLALKHRQ-----NKK-QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 17 ~gIqiA~LALKHRq-----nK~-~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
.|..+|...+++.. ++. ...||+||+|+= .+=-+=.-+|+.|...++.|.|+.
T Consensus 36 AG~ava~~i~~~~~~~~~~~~~~~~~~V~VlcG~G--NNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 36 AGLSVAEAVYEVADGEKASNPPGRHPRVLLVCGPG--NNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred HHHHHHHHHHHHhccccccCccCCCCeEEEEECCC--CCchhHHHHHHHHHHCCCeEEEEE
Confidence 35677777766432 122 236899999875 344556788999999999999987
No 202
>PRK07667 uridine kinase; Provisional
Probab=34.35 E-value=1e+02 Score=27.49 Aligned_cols=49 Identities=14% Similarity=0.363 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCccccceEEEEecCCCcccHHHH-HHHHHHhhhccceeeEEEecC
Q 020031 21 VAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVL-EMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 21 iA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L-~klaKkLKKnnVavDII~FGe 74 (332)
|+.+-.+|+ .+|+||.|+.|-..-+-.+ ..|++.|++.++.+.+|.+-+
T Consensus 6 ~~~~~~~~~-----~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 6 LINIMKKHK-----ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred HHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 344445565 4668888888887766665 678888988888888888754
No 203
>PLN02530 histidine-tRNA ligase
Probab=34.23 E-value=1.3e+02 Score=31.27 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 49 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 49 dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
..+...+++++|+++|+.|++...+ .+|.+-+...+...-.++|.|-.
T Consensus 413 ~~~~A~~ia~~LR~~Gi~vevd~~~-------~~l~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 413 LQGAAAGVASRLREKGRSVDLVLEP-------KKLKWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecCC-------CCHHHHHHHHHHCCCCEEEEEch
Confidence 4567889999999999999885432 23566666677666677777754
No 204
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=34.03 E-value=1.4e+02 Score=29.99 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=42.2
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCC--cHHHHHHHHHHHhcCCCceEEEeCCCCch
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEG--NTEKLEALLAAVNNNDSSHLVHVPPGPNA 107 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~--n~~kL~~fi~~vN~~~~Shlv~VP~G~~~ 107 (332)
+-||||+||=. +....+|.+-|+..++.+.++.+-...+- -...|..+++.... +..-.+++--|..+
T Consensus 28 ~kvvlI~t~~~--~~~~~~L~~~l~~~~~~~e~~~i~d~~d~~~i~~~l~~l~~~~~~-~~~i~lNlTGGTK~ 97 (381)
T PF09002_consen 28 DKVVLIGTEDM--KEKAERLKSVLKQRGIKVEFFEIPDEYDIEEIKESLEQLLEKLKA-GDEIILNLTGGTKL 97 (381)
T ss_dssp -EEEEEE-GGG--HHHHHHHHHHHHHTT-EEEEEE--SSS-HHHHHHHHHHHHHHHHH-T-EEEEE-SSS-HH
T ss_pred CEEEEEECchH--HHHHHHHHHHHHhcCCCceEEecCChhhHHHHHHHHHHHHHhccC-CCeEEEEeCCChHH
Confidence 46999999966 77778999999999999999887543211 13456666666643 45567777777655
No 205
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.01 E-value=1.3e+02 Score=32.96 Aligned_cols=57 Identities=5% Similarity=0.010 Sum_probs=41.6
Q ss_pred ceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCC
Q 020031 36 QRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND 94 (332)
Q Consensus 36 qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~ 94 (332)
..+|+|||.-.. -.-..|++..++|.+..-.+.+|.+|+.. -.++|+++++..+-.+
T Consensus 517 ~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~--~~~~L~~l~~~lgL~~ 574 (694)
T PRK15179 517 RFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP--LLESVREFAQRLGMGE 574 (694)
T ss_pred CeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc--chHHHHHHHHHcCCCC
Confidence 457889986322 13567889988888777789999999854 3578999998875433
No 206
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=33.84 E-value=53 Score=33.12 Aligned_cols=49 Identities=18% Similarity=0.364 Sum_probs=32.3
Q ss_pred cccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC-CcHHHHHHHH
Q 020031 33 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE-GNTEKLEALL 87 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~-~n~~kL~~fi 87 (332)
...+++|||+.+ .+....|++.|++.++.+-.+. |.... +-...|+.|-
T Consensus 243 ~~~~~~lVF~~t-----~~~~~~l~~~L~~~g~~~~~lh-g~~~~~~R~~~l~~F~ 292 (456)
T PRK10590 243 GNWQQVLVFTRT-----KHGANHLAEQLNKDGIRSAAIH-GNKSQGARTRALADFK 292 (456)
T ss_pred CCCCcEEEEcCc-----HHHHHHHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHH
Confidence 345789999876 5667789999999998776654 44331 1234455553
No 207
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=33.72 E-value=68 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=26.6
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
++.+++|.= ..--.+-..++++||+.+|.|+++.|-
T Consensus 168 p~~i~~g~~-D~l~~~~~~~~~~L~~~gv~v~~~~~~ 203 (211)
T PF07859_consen 168 PTLIIHGED-DVLVDDSLRFAEKLKKAGVDVELHVYP 203 (211)
T ss_dssp EEEEEEETT-STTHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred Ceeeecccc-ccchHHHHHHHHHHHHCCCCEEEEEEC
Confidence 677777763 222346688999999999999998874
No 208
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=33.67 E-value=2.1e+02 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=17.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhcccee
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVAL 67 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVav 67 (332)
|++.|+. .++.++..++++|.+.+..|
T Consensus 3 vl~s~~~---~~k~~~~~~~~~l~~~G~~l 29 (110)
T cd01424 3 VFISVAD---RDKPEAVEIAKRLAELGFKL 29 (110)
T ss_pred EEEEEEc---CcHhHHHHHHHHHHHCCCEE
Confidence 4444442 36778889888866655443
No 209
>PRK07060 short chain dehydrogenase; Provisional
Probab=33.56 E-value=96 Score=27.15 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
.++...+.+.+.++++-..+....| |+|++|-.. ..+..+ ..+++.+++.+|.|-.|.-|-..
T Consensus 107 ~n~~~~~~l~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~ 184 (245)
T PRK07060 107 VNARGAALVARHVARAMIAAGRGGS-IVNVSSQAALVGLPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTL 184 (245)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCcE-EEEEccHHHcCCCCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCC
Confidence 4566667777777776432222234 666776321 112222 33556666677777777766544
No 210
>PRK10997 yieM hypothetical protein; Provisional
Probab=33.47 E-value=1.4e+02 Score=31.68 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=47.4
Q ss_pred cCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCccc--HHHHHHHHHHhhh-ccceeeEEEecCCC
Q 020031 9 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE--KKVLEMIGRKLKK-NSVALDIVNFGEDD 76 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~d--ek~L~klaKkLKK-nnVavDII~FGe~~ 76 (332)
.+|..+|..++.-|.-.++.+ ..+|=++||-|-.... .+++++--++||+ .+..+--|++|...
T Consensus 393 f~GGTDl~~aL~~al~~l~~~----~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~ 459 (487)
T PRK10997 393 FRGGTDLAPCLRAIIEKMQGR----EWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHG 459 (487)
T ss_pred cCCCCcHHHHHHHHHHHHccc----ccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCC
Confidence 467888999988776555432 2446667777777543 5778888899988 88999999999654
No 211
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=33.28 E-value=46 Score=29.78 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=24.3
Q ss_pred CCCCCCH---HHHHHHHhcHHHHHHHHHHHHHH
Q 020031 147 VDPNLDP---ELALALRVSMEEERARQEAAAKR 176 (332)
Q Consensus 147 vDP~~DP---ELAmALR~SmEEEr~RQe~~~~~ 176 (332)
+.-+.|| +|.|-.|+-+.|+|.|.++++.=
T Consensus 111 f~~eDDPFE~~L~~Iy~lGl~Eq~~Rl~r~~~F 143 (157)
T PF10293_consen 111 FELEDDPFESELGMIYRLGLDEQRERLEREEAF 143 (157)
T ss_pred EEEeCCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445566 99999999999999999987643
No 212
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=33.12 E-value=2.2e+02 Score=26.64 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHh------------------hhccceeeEEEecC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKL------------------KKNSVALDIVNFGE 74 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkL------------------KKnnVavDII~FGe 74 (332)
-+++++-.++.-.||.+..+. .| |+++|++-. .++|...+=++ .+.+-++++|.+|.
T Consensus 65 ~~i~ts~~~~~~~l~~~~~~~--~~-v~~iG~~~~--~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv~~ 139 (279)
T TIGR01452 65 EQLFSSALCAARLLRQPPDAP--KA-VYVIGEEGL--RAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENVGAVVVGY 139 (279)
T ss_pred hhEecHHHHHHHHHHhhCcCC--CE-EEEEcCHHH--HHHHHHCCCEEecCcccccccchhhcccccccCCCCCEEEEec
Confidence 356677777777777654332 23 777888622 22232212110 11123578888888
Q ss_pred CCCCcHHHHHHHHHHHhc
Q 020031 75 DDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 75 ~~~~n~~kL~~fi~~vN~ 92 (332)
...-|-+.+...++.+..
T Consensus 140 d~~~~y~~i~~~l~~L~~ 157 (279)
T TIGR01452 140 DEHFSYAKLREACAHLRE 157 (279)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 666788899999998864
No 213
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.02 E-value=3.1e+02 Score=27.05 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=52.8
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 113 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~ 113 (332)
-++.+..-..-..+.-=.....|..++-+|.+.++.|.+.. ..+.|...|..+|..++-| ||-.|--+++-.+.++
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~ 110 (284)
T PRK14193 33 PGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADA--TQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVL 110 (284)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 34433333333444555566778889999999999998776 3466888899999888766 5555654455566666
Q ss_pred hc
Q 020031 114 ST 115 (332)
Q Consensus 114 sS 115 (332)
+.
T Consensus 111 ~~ 112 (284)
T PRK14193 111 ER 112 (284)
T ss_pred hc
Confidence 55
No 214
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=32.89 E-value=79 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=32.2
Q ss_pred ceEEEEecCCCcc---cHHHHHHHHHHhhhcc-ceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKH---EKKVLEMIGRKLKKNS-VALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~---dek~L~klaKkLKKnn-VavDII~FGe~ 75 (332)
|||++-+|||-.+ +..-...+.+.|++++ ..|.++...+.
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 6999999999874 3444588999999999 99999999986
No 215
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=32.47 E-value=1.6e+02 Score=24.87 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=35.7
Q ss_pred cceEEEEecC--CCcccHHHHHHHHHHhhhccceeeEEEec---CCCCCcHHHHHHHHHH
Q 020031 35 QQRIIVFVGS--PIKHEKKVLEMIGRKLKKNSVALDIVNFG---EDDEGNTEKLEALLAA 89 (332)
Q Consensus 35 ~qRIIvFVGS--Pi~~dek~L~klaKkLKKnnVavDII~FG---e~~~~n~~kL~~fi~~ 89 (332)
+--+|.|.++ |....-..|.+|.+++++.++.|=-|+.. ....+..+.+.+|++.
T Consensus 23 k~vvl~fwatwC~C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~ 82 (152)
T cd00340 23 KVLLIVNVASKCGFTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCET 82 (152)
T ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHH
Confidence 3456667654 44345568899999999888765444432 2222456889999976
No 216
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=32.45 E-value=4.2e+02 Score=24.77 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=31.7
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCC--cHHHHHHHHHHH
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEG--NTEKLEALLAAV 90 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~--n~~kL~~fi~~v 90 (332)
....+|+|||.-... .-..|++..++|.+ + +.++.+|..... -.+.++..+...
T Consensus 199 ~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~-~--~~l~i~g~g~~~~~~~~~~~~~~~~~ 255 (388)
T TIGR02149 199 RSRPYILFVGRITRQKGVPHLLDAVHYIPK-D--VQVVLCAGAPDTPEVAEEVRQAVALL 255 (388)
T ss_pred CCceEEEEEcccccccCHHHHHHHHHHHhh-c--CcEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 345689999986543 55778888888864 3 445555543311 134455555544
No 217
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=32.24 E-value=32 Score=27.58 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=12.0
Q ss_pred CCCCCChHHHHHHHHhh
Q 020031 294 GVDPEDPSVKDVLTSMQ 310 (332)
Q Consensus 294 GVDpnd~~i~~al~~l~ 310 (332)
||||+|+.||.++..+.
T Consensus 51 g~~p~s~evq~l~~~~~ 67 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWM 67 (118)
T ss_dssp T--TT-HHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 79999999999987764
No 218
>PRK00035 hemH ferrochelatase; Reviewed
Probab=32.16 E-value=34 Score=33.19 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcCCccccc-eEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCc
Q 020031 19 IQVAQLALKHRQNKKQQQ-RIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSS 96 (332)
Q Consensus 19 IqiA~LALKHRqnK~~~q-RIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~S 96 (332)
.-++.+-++.|..|..+. +.|-. |||+. .+++...+|.++|++-+..+.|..+=+... +-++.-++.+-..+-.
T Consensus 45 ~~l~~~i~~~r~~~~~~~Y~~ig~-gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~am~y~~---P~i~eal~~l~~~G~~ 120 (333)
T PRK00035 45 PLLAGIILPERLPKVAKHYASIGG-GSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWN---PSIEEALEALKADGVD 120 (333)
T ss_pred HHHHHHhhhhhHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHHHhccCCCceEEEeecCCC---CCHHHHHHHHHhcCCC
Confidence 346667778888776532 33434 99998 688999999999976444444433323221 2244444444445667
Q ss_pred eEEEeCCCC
Q 020031 97 HLVHVPPGP 105 (332)
Q Consensus 97 hlv~VP~G~ 105 (332)
+++.+|--|
T Consensus 121 ~IivlPL~p 129 (333)
T PRK00035 121 RIVVLPLYP 129 (333)
T ss_pred EEEEEECCC
Confidence 999998765
No 219
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=32.11 E-value=1.3e+02 Score=23.83 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=41.2
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc--c--cHHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--H--EKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~--~--dek~L~klaKkLKKnnVavDII~F 72 (332)
+.+.|..+|.++=.+-.-.+.....+ ..+.|++=.|.+. + --..|..+.|++++.++.+=|+..
T Consensus 14 ~~l~G~L~~~~a~~~~~~l~~~~~~~--~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~ 81 (109)
T cd07041 14 LPLIGDLDDERAEQLQERLLEAISRR--RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGI 81 (109)
T ss_pred EeeeeeECHHHHHHHHHHHHHHHHHc--CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 47889999988877655333322212 3344555555554 3 246789999999999988777665
No 220
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=32.10 E-value=1.1e+02 Score=24.97 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=37.8
Q ss_pred cceEEEEecCCC----cccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 35 QQRIIVFVGSPI----KHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 35 ~qRIIvFVGSPi----~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
++-+|++..+|- ..-...+.+++++++.+. ++|.|+..+ ...++...+....+-..--.++.+++|.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~---~~v~~~~vd-~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWR---PVVRVAAVD-CADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcC---CceEEEEEe-ccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 357888887775 344667899999998753 234444433 1112223334333333445666666664
No 221
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=31.99 E-value=90 Score=26.90 Aligned_cols=23 Identities=22% Similarity=0.357 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHhhhccceeeEE
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIV 70 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII 70 (332)
.++++|..|.+++++++|..-++
T Consensus 63 ~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 63 PDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEE
Confidence 47899999999999999987764
No 222
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=31.79 E-value=70 Score=30.78 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=34.6
Q ss_pred cceEEEEecCCCccc-HHHHHHHH---HHhhhcc-ceeeEEEecCCCCCcHHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKHE-KKVLEMIG---RKLKKNS-VALDIVNFGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 35 ~qRIIvFVGSPi~~d-ek~L~kla---KkLKKnn-VavDII~FGe~~~~n~~kL~~fi~~ 89 (332)
.-+-|+|||-|.... =..|.+.. ++++.|- +-|+|++.|.-. .+++..|++.
T Consensus 93 ~~~kva~VGtPCqI~alr~l~~~~~~~~~~~d~l~~~Igl~C~g~~~---~~~~~~~l~~ 149 (282)
T PRK09325 93 GLDKVGIVGTPCQIQAVRKAQLYPVGMRHVPDKIALIVGIFCMENFP---YEGLKTIVED 149 (282)
T ss_pred CCCeEEEEccChHHHHHHHHHhccccccccccceeEEEcccCCCCCC---HHHHHHHHHH
Confidence 447899999998753 23333221 2333444 689999999655 5778888877
No 223
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=31.69 E-value=1.3e+02 Score=23.92 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=50.0
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCc------cccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNK------KQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK------~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+++.|.+.|.++=.+-....+.-... .+.-+.|||=+|.+.. | -..|.++.+.|++.+|.|=+++.
T Consensus 13 i~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~ 88 (117)
T PF01740_consen 13 IRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL 88 (117)
T ss_dssp EEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred EEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 47889999988877766655544333 3556899999999873 3 46789999999999999888765
No 224
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=31.58 E-value=1.2e+02 Score=23.04 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 45 PIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 45 Pi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
|....-..|.++.+++++ +-.|.||...-. .+.+..+.|+..-
T Consensus 15 ~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d--~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 15 PCKKELPKLKELYKKYKK-KDDVEFVFVSLD--EDEEEWKKFLKKN 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTTEEEEEEE-S--SSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEEEeC--CCHHHHHHHHHhc
Confidence 334566778888888885 566667766653 3456667766654
No 225
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=31.55 E-value=91 Score=23.67 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=31.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+|-++|..+..+..-+.++-..|.+.+|.||.|.-++
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s~ 39 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSE 39 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4667788888888888999999999999999987543
No 226
>PRK09004 FMN-binding protein MioC; Provisional
Probab=31.43 E-value=70 Score=27.68 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=32.5
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F 72 (332)
+|+||.||=--..+.-..+|+++|+..++.+.|++.
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 799999999888899899999999999999998754
No 227
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=31.05 E-value=77 Score=26.66 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=27.9
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceee
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALD 68 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavD 68 (332)
|||+|+.+|=-..+++-..+|++.|+..++.|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEE
Confidence 588888899556788888999999999888877
No 228
>PRK05723 flavodoxin; Provisional
Probab=31.02 E-value=67 Score=28.18 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=31.4
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
++|.||.||=--..+.-..+|+++|+..++.+.++.
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 589999999988889999999999999888887653
No 229
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=31.00 E-value=1.4e+02 Score=26.83 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHH----HHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKV----LEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~----L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+.+.+++|=..+ +.+-|+|++|... ..+-- ...+++.|+..||.|-.|..|-..
T Consensus 117 ~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~ 193 (265)
T PRK07097 117 IDLNAPFIVSKAVIPSMIKK--GHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIA 193 (265)
T ss_pred hhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCccccCCCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEecccc
Confidence 45666677777777653221 2344777777432 12222 345677777789999999999876
No 230
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=30.78 E-value=87 Score=27.70 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
|+||.|+|.+=.--.--+.+|.+.|+..+..|.+|-+.-
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~ 39 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH 39 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 579999999833333334889999999998898887643
No 231
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=30.59 E-value=1.3e+02 Score=27.46 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe
Q 020031 17 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F 72 (332)
.|..+|...+++... ..||+||+|+=. +=-+=.-+|+.|+..+|.|-++..
T Consensus 30 Ag~~va~~i~~~~~~---~~~v~vl~G~GN--NGGDGlv~AR~L~~~~v~V~~~~~ 80 (205)
T TIGR00197 30 AGKAVAQAVLQAFPL---AGHVIIFCGPGN--NGGDGFVVARHLKGFGVEVFLLKK 80 (205)
T ss_pred HHHHHHHHHHHHcCC---CCeEEEEECCCC--CccHHHHHHHHHHhCCCEEEEEcc
Confidence 466788888776432 468999988854 334456788999876665555433
No 232
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.52 E-value=5.6e+02 Score=25.54 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=52.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLL 113 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~ 113 (332)
-.+.+..-.+-....-=.....|..++-+|...++.|.+.. ..+.|.+.|+.+|..++-| ||-.|--+++-...++
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~ 111 (301)
T PRK14194 34 PALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADT--SQARLLALIAELNADPSVNGILLQLPLPAHIDEARVL 111 (301)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHH
Confidence 34444443333445555566778889999999999998776 3567888999999887665 4444643455555565
Q ss_pred hc
Q 020031 114 ST 115 (332)
Q Consensus 114 sS 115 (332)
..
T Consensus 112 ~~ 113 (301)
T PRK14194 112 QA 113 (301)
T ss_pred hc
Confidence 55
No 233
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=30.52 E-value=2.3e+02 Score=23.44 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhcCCccccceEEEEecCCCccc-H--------HHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 18 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHE-K--------KVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 18 gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~d-e--------k~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
+..+++.- +++....-|++.|+..+-... . ..+..|.+.+++++|.-=||++-. ...+.++.+++
T Consensus 89 ~~~~~~~l---~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~---~~~~~i~~ii~ 162 (175)
T PF13727_consen 89 GRELAEAL---RSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPW---SEEEQIKRIIE 162 (175)
T ss_dssp HHHHHHHH---HH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TT---S-HHHHHHHHH
T ss_pred HHHHHHHH---HhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCc---cCHHHHHHHHH
Confidence 44444443 333444567888886665422 1 245666777777877755566533 34688999999
Q ss_pred HHhcCCCceEEEeC
Q 020031 89 AVNNNDSSHLVHVP 102 (332)
Q Consensus 89 ~vN~~~~Shlv~VP 102 (332)
... +.++++-.||
T Consensus 163 ~~~-~~~v~v~~vP 175 (175)
T PF13727_consen 163 ELE-NHGVRVRVVP 175 (175)
T ss_dssp HHH-TTT-EEEE--
T ss_pred HHH-hCCCEEEEeC
Confidence 886 4567777766
No 234
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.45 E-value=92 Score=30.20 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHhhhccceeeEEEecC------------C--CCCcHHHHHHHHHHHhcCCCceEE-EeCCCC---chhhH
Q 020031 49 EKKVLEMIGRKLKKNSVALDIVNFGE------------D--DEGNTEKLEALLAAVNNNDSSHLV-HVPPGP---NALSD 110 (332)
Q Consensus 49 dek~L~klaKkLKKnnVavDII~FGe------------~--~~~n~~kL~~fi~~vN~~~~Shlv-~VP~G~---~~LsD 110 (332)
+.+++..+++++++++|.||+|...- - +.++=+-..+||+.+... +=|++ .|-|.- ..+++
T Consensus 27 ~q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~-g~k~~~~i~P~i~~~~~~y~ 105 (317)
T cd06599 27 AQEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHER-GIRLAPNIKPGLLQDHPRYK 105 (317)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHC-CCEEEEEeCCcccCCCHHHH
Confidence 47889999999999999999997531 0 111223378999999865 44544 555541 22455
Q ss_pred HhhhcCc
Q 020031 111 VLLSTPI 117 (332)
Q Consensus 111 ~l~sSpI 117 (332)
-....-+
T Consensus 106 e~~~~g~ 112 (317)
T cd06599 106 ELKEAGA 112 (317)
T ss_pred HHHHCCc
Confidence 5555443
No 235
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=30.40 E-value=98 Score=34.87 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecC-------CCc--c---------cHHHHHHHHHHhhhccceeeEEEec
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-------PIK--H---------EKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS-------Pi~--~---------dek~L~klaKkLKKnnVavDII~FG 73 (332)
..+-.||++|++-+|.. .-.||||+++ -+. + +..--.++++.|-|-+|+||+..|-
T Consensus 388 ~~~G~aLk~a~~l~g~~-----GGkii~~~stlPn~G~Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~ 461 (861)
T COG5028 388 NALGPALKAAKSLIGGT-----GGKIIVFLSTLPNMGIGKLQLREDKESSLLSCKDSFYKEFAIECSKVGISVDLFLTS 461 (861)
T ss_pred cccCHHHHHHHHHhhcc-----CceEEEEeecCCCcccccccccccchhhhccccchHHHHHHHHHHHhcceEEEEecc
Confidence 44667999999987655 4559999988 333 1 1222378999999999999999993
No 236
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.17 E-value=3.9e+02 Score=26.37 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 114 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~s 114 (332)
.+.+..-..-..+.-=.....|.+++-+|.+.++.|-+.. ..+.|...|+.+|..++-| ||-.|--+++-.+.+++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~ 111 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADL--SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIE 111 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 4433333333455555567788899999999999998765 3567888999999877654 55556545655566665
Q ss_pred c
Q 020031 115 T 115 (332)
Q Consensus 115 S 115 (332)
.
T Consensus 112 ~ 112 (285)
T PRK14189 112 A 112 (285)
T ss_pred h
Confidence 5
No 237
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=30.12 E-value=1.6e+02 Score=25.45 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=12.2
Q ss_pred CCCceEEEeCCCCchhhHHh
Q 020031 93 NDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 93 ~~~Shlv~VP~G~~~LsD~l 112 (332)
.+-.|++.||+| .++|.+
T Consensus 89 ~G~~~i~v~p~g--F~~D~~ 106 (135)
T cd00419 89 EGVKNVVVVPIG--FVSDHL 106 (135)
T ss_pred cCCCeEEEECCc--cccccH
Confidence 356899999997 245443
No 238
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=29.99 E-value=2.1e+02 Score=26.55 Aligned_cols=82 Identities=15% Similarity=0.303 Sum_probs=41.7
Q ss_pred ccceEEEEecCCCc-cc-HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcC--------------CCce
Q 020031 34 QQQRIIVFVGSPIK-HE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN--------------DSSH 97 (332)
Q Consensus 34 ~~qRIIvFVGSPi~-~d-ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~--------------~~Sh 97 (332)
....+|+|||.=.. .. .+-|...+++|++.++.+ ++..|... .+.|+..++..+-. ..|+
T Consensus 177 ~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~-~~~~g~~~---~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad 252 (348)
T TIGR01133 177 EGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQI-VHQTGKND---LEKVKNVYQELGIEAIVTFIDENMAAAYAAAD 252 (348)
T ss_pred CCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEE-EEECCcch---HHHHHHHHhhCCceEEecCcccCHHHHHHhCC
Confidence 34567778863122 22 122446677777666555 35556543 25666655543210 1355
Q ss_pred EEEeCCCCchhhHHhh-hcCccc
Q 020031 98 LVHVPPGPNALSDVLL-STPIFT 119 (332)
Q Consensus 98 lv~VP~G~~~LsD~l~-sSpI~~ 119 (332)
++..++|++.|.+++. .-|++.
T Consensus 253 ~~v~~~g~~~l~Ea~~~g~Pvv~ 275 (348)
T TIGR01133 253 LVISRAGASTVAELAAAGVPAIL 275 (348)
T ss_pred EEEECCChhHHHHHHHcCCCEEE
Confidence 5556666555555543 345543
No 239
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=29.96 E-value=17 Score=33.98 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=9.5
Q ss_pred eEEEEecCCCcccHHHHHHHHHHh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKL 60 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkL 60 (332)
--|+|+|||+..+=++|...|-.|
T Consensus 129 ~~ilFl~sP~v~~l~el~~~gl~l 152 (219)
T PF07701_consen 129 DSILFLGSPVVSSLEELRERGLYL 152 (219)
T ss_dssp TEEEEEEEE---TT----------
T ss_pred CeEEEEcccccCCHHHHHHcCCCc
Confidence 368999999988877777666554
No 240
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=29.94 E-value=1.8e+02 Score=22.55 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhcCCccccceEEEEecCCCc---ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 16 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 16 ~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~---~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..|+.-+.=+||..-. .+|+|+-+|..-. .+.+....+++-+.+... +||.+|+..
T Consensus 24 p~s~~a~l~~l~~~~~---~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d--~vi~~~~~~ 82 (91)
T PF02875_consen 24 PDSIRALLEALKELYP---KGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLAD--VVILTGDNP 82 (91)
T ss_dssp HHHHHHHHHHHHHHCT---TSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSS--EEEEETSBT
T ss_pred HHHHHHHHHHHHHhcc---CCcEEEEEccccccccccHHHHHHHHHHHHhcCC--EEEEcCCCC
Confidence 4566666667765532 5677777776555 455545566666665332 377777643
No 241
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.93 E-value=5.5e+02 Score=25.29 Aligned_cols=74 Identities=11% Similarity=0.194 Sum_probs=49.6
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhhhc
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLST 115 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~sS 115 (332)
|+.||.- ..+.--.....|..++-+|.+.++.|-+.. . .+.|...|+.+|..++.| ||-.|--.++-...+++.
T Consensus 37 ii~vg~d-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~-~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~ 112 (278)
T PRK14172 37 SILVGND-GGSIYYMNNQEKVANSLGIDFKKIKLDESI-S-EEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK 112 (278)
T ss_pred EEEeCCC-HHHHHHHHHHHHHHHHcCCEEEEEECCCCC-C-HHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence 4455532 334444455678889999999999998776 3 456888899999888766 444454345555555554
No 242
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.90 E-value=1.2e+02 Score=25.10 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
.......+|+.+|+++++.|++- + . .+|..-+...+..+-.+++.|-.
T Consensus 39 ~~~~~a~~la~~LR~~gi~v~~d-~------~-~sl~kqlk~A~k~g~~~~iiiG~ 86 (121)
T cd00858 39 ELVEIAKEISEELRELGFSVKYD-D------S-GSIGRRYARQDEIGTPFCVTVDF 86 (121)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEe-C------C-CCHHHHHHHhHhcCCCEEEEECc
Confidence 34567789999999999999873 2 2 34666666666555556665543
No 243
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=29.74 E-value=56 Score=28.07 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=38.6
Q ss_pred cCCccccceEEEEecCCCcccHHHHHHHHHHhhhc---cce-ee-------EEEecCCCCCcHHHHHHHHHHHh
Q 020031 29 RQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN---SVA-LD-------IVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 29 RqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKn---nVa-vD-------II~FGe~~~~n~~kL~~fi~~vN 91 (332)
++.++.|+.+-+--|-| .+.+|.+|+|.|||. |=+ .| |..=| +..+++..|+....
T Consensus 32 i~qR~grK~VTiI~Gl~---~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQG----D~re~v~~~L~~~g 98 (110)
T TIGR01160 32 IQQRNGRKTLTTVQGLP---KEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQG----DQRKNVCEFLISQG 98 (110)
T ss_pred EEEccCCccEEEEeccC---ChHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeC----cHHHHHHHHHHHcC
Confidence 34566678888888888 377899999999983 222 22 33334 45688888887764
No 244
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=29.67 E-value=1.2e+02 Score=27.01 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHH----HHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKV----LEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~----L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+.+.++|+-..+ ...| |+|++|... ..+-- ...+++.|+..||.|-+|..|-..
T Consensus 117 ~n~~~~~~l~~~~~~~~~~~-~~g~-iv~iss~~~~~~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~ 193 (255)
T PRK07523 117 TNISSVFYVGQAVARHMIAR-GAGK-IINIASVQSALARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFD 193 (255)
T ss_pred HHhHHHHHHHHHHHHHHHHh-CCeE-EEEEccchhccCCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECccc
Confidence 55666777788887764321 2334 666666432 12222 344566667788999999988765
No 245
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=29.48 E-value=1.6e+02 Score=25.71 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=34.3
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhh----hccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLK----KNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLK----KnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
.-|=|+|||-|.... -|.++-++=. ++=+-|+|++.|.-. ..++..++...
T Consensus 3 ~~~kV~~vG~PCqi~--al~~~~~~~~~~~~~~~~~igl~C~g~~s---~~~~~~~l~~~ 57 (161)
T PF04432_consen 3 GGKKVAFVGTPCQIA--ALRKLLKRNYENRDEIVYTIGLFCHGVPS---PKKLRKYLEEQ 57 (161)
T ss_pred CCCEEEEEeccHHHH--HHHHHHhhCcccCcceEEEEeEECCCCCC---HHHHHHHHHHH
Confidence 345689999998643 2444444322 233889999998666 67888888885
No 246
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=29.32 E-value=2.4e+02 Score=24.05 Aligned_cols=65 Identities=15% Similarity=-0.001 Sum_probs=44.5
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC------C-----cHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE------G-----NTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~------~-----n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
..+++|..|-..+-.++.++-+.|++.++.+--|.+--... . +...++.|.+.+ .-.++..||-.
T Consensus 93 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ip~~ 168 (169)
T cd02037 93 DGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEEL---GVPLLGKIPLD 168 (169)
T ss_pred CeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHc---CCCEEEeccCC
Confidence 56788888887788888888888888888765443322110 0 235788888877 66788888753
No 247
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=29.10 E-value=91 Score=27.77 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=31.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
++|+|+.+|=-..+++-...|++.|.. ++.||++.+.+
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~ 38 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHR 38 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhh
Confidence 578888899666788888999999998 89999988654
No 248
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.03 E-value=1.1e+02 Score=23.75 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=38.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC-----CCc-----HHHHHHHHHHHhc
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD-----EGN-----TEKLEALLAAVNN 92 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~-----~~n-----~~kL~~fi~~vN~ 92 (332)
+|-+.+..+..+..-+.++-..|.+++|+||.|.-++.. ..+ .++|..+++.++.
T Consensus 3 ~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s~~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 3 LVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 455556666666777889999999999999999765411 011 1367777777754
No 249
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.86 E-value=83 Score=28.67 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=29.5
Q ss_pred EEEecCC----C-cccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 39 IVFVGSP----I-KHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 39 IvFVGSP----i-~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|+|||+. . .-.+.-+..|++.|.+.++.|+||+.+...
T Consensus 2 i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~ 44 (363)
T cd04955 2 IAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYP 44 (363)
T ss_pred eEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCC
Confidence 5667663 2 235788899999999999999999987543
No 250
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=28.79 E-value=1.5e+02 Score=22.66 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=32.3
Q ss_pred ceEEEEecCC----CcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcC--CCceEEEeCC
Q 020031 36 QRIIVFVGSP----IKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN--DSSHLVHVPP 103 (332)
Q Consensus 36 qRIIvFVGSP----i~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~--~~Shlv~VP~ 103 (332)
..+|+|..+| ...-...+.++|++++ +-|.|+-.+ .+....+.+..+-. +--+|+.+..
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~------~~v~f~~vd---~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFK------GKLLFVVVD---ADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhC------CeEEEEEEc---hHhhHHHHHHcCCChhhCCEEEEEec
Confidence 3455555444 3344677889999987 335666544 23344455555543 3335555544
No 251
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.76 E-value=5.5e+02 Score=24.96 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=56.1
Q ss_pred hhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCC--ceEEEeCC
Q 020031 26 LKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS--SHLVHVPP 103 (332)
Q Consensus 26 LKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~--Shlv~VP~ 103 (332)
||.|.++ +-+..++.-..-..+.-=...--|.+++-+|....+.|-+.. . .+.|..+|+.+|..++ --+|++|=
T Consensus 26 ~~~~~~~--~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~-~-~~~l~~~i~~Ln~d~~v~Gi~VqlPl 101 (283)
T PRK14192 26 LKAKTGR--TPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQET-T-TEQLLAKIEELNANPDVHGILLQHPV 101 (283)
T ss_pred HHhccCC--CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCC-C-HHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 4444333 234544443333444444556677889999999999997665 2 4669999999998765 46788885
Q ss_pred CCchhhHHhhhc
Q 020031 104 GPNALSDVLLST 115 (332)
Q Consensus 104 G~~~LsD~l~sS 115 (332)
-.++..+.++..
T Consensus 102 p~~i~~~~~ld~ 113 (283)
T PRK14192 102 PAQIDERACFDA 113 (283)
T ss_pred ccccCHHHHHhc
Confidence 455555555554
No 252
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=28.73 E-value=2.7e+02 Score=28.06 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhh-ccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 50 KKVLEMIGRKLKK-NSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 50 ek~L~klaKkLKK-nnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
.....+++++|++ +|+.|++.... .++..-++..+...-.++|.|-.
T Consensus 349 ~~~a~~ia~~Lr~~~Gi~ve~~~~~-------~~l~~~i~~A~~~g~~~iviig~ 396 (423)
T PRK12420 349 ELQCLQIAQQLRSTTGLKVELELAG-------RKLKKALNYANKENIPYVLIIGE 396 (423)
T ss_pred HHHHHHHHHHHHhhcCCeEEEecCC-------cCHHHHHHHHHHcCCCEEEEECh
Confidence 4568999999999 99999875431 23444555555545556666643
No 253
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=28.68 E-value=1e+02 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=12.8
Q ss_pred HHHHHhhhcCCccccceEEEEecCCCc
Q 020031 21 VAQLALKHRQNKKQQQRIIVFVGSPIK 47 (332)
Q Consensus 21 iA~LALKHRqnK~~~qRIIvFVGSPi~ 47 (332)
||+.||.+.......=+.|+|+|||..
T Consensus 98 var~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 98 VARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred HHHHHHhccccccccEEEEEEEcCCCC
Confidence 444444444433334445555555554
No 254
>PRK14434 acylphosphatase; Provisional
Probab=28.60 E-value=1.2e+02 Score=24.65 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHHhh------hccc--eeeEEEecCCCCCcHHHHHHHHHHHhcCC--CceEEEe
Q 020031 52 VLEMIGRKLK------KNSV--ALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHV 101 (332)
Q Consensus 52 ~L~klaKkLK------KnnV--avDII~FGe~~~~n~~kL~~fi~~vN~~~--~Shlv~V 101 (332)
-..++|++|. +|.- +|.|+.-|+.. +.|+.|++.+..+. .+|+-.|
T Consensus 20 fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~----~~l~~f~~~l~~g~pp~a~V~~v 75 (92)
T PRK14434 20 SVYSLALEIGDIYGRVWNNDDGTVEILAQSDDS----AKLAKFIQEIRKGPSKWAKVTYV 75 (92)
T ss_pred HHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCH----HHHHHHHHHHhcCCCCCEEEEEE
Confidence 3567888888 6655 58888888653 56999999998754 4666554
No 255
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.60 E-value=1.7e+02 Score=25.64 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=39.4
Q ss_pred EEEecCCCccc--------HHHHHHHHHHhhhc--cceeeEEEecCCCCCcH-------HHHHHHHHHHhcCCCceEEEe
Q 020031 39 IVFVGSPIKHE--------KKVLEMIGRKLKKN--SVALDIVNFGEDDEGNT-------EKLEALLAAVNNNDSSHLVHV 101 (332)
Q Consensus 39 IvFVGSPi~~d--------ek~L~klaKkLKKn--nVavDII~FGe~~~~n~-------~kL~~fi~~vN~~~~Shlv~V 101 (332)
|+|+|.=|.+- .---..|+.+|... .-.++|||+|-.. .++ ..|..|...|-...+--+|+|
T Consensus 2 iv~~GDSiT~G~~~~~~~~~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G-~t~~~~~~~~~~l~r~~~~v~~~~~p~~vii 80 (204)
T cd01830 2 VVALGDSITDGRGSTPDANNRWPDLLAARLAARAGTRGIAVLNAGIGG-NRLLADGLGPSALARFDRDVLSQPGVRTVII 80 (204)
T ss_pred EEEEecccccCCCCCCCCCCcCHHHHHHHHHhccCCCCcEEEECCccC-cccccCCCChHHHHHHHHHHhcCCCCCEEEE
Confidence 67888888741 12245666666554 5679999999877 443 567777665532222234444
Q ss_pred CCCC
Q 020031 102 PPGP 105 (332)
Q Consensus 102 P~G~ 105 (332)
--|.
T Consensus 81 ~~G~ 84 (204)
T cd01830 81 LEGV 84 (204)
T ss_pred eccc
Confidence 4443
No 256
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.50 E-value=24 Score=36.86 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=18.2
Q ss_pred CCCCChHHHHHHHHhcccCCCCC
Q 020031 246 EVAEDDPELALALQLSMQDGTKD 268 (332)
Q Consensus 246 ~~~~Eee~ia~AlqmSmq~~~~~ 268 (332)
+.-.|||+|++||+||+.+.+..
T Consensus 161 ~~k~EeEdiaKAi~lSL~E~~~Q 183 (462)
T KOG2199|consen 161 SSKQEEEDIAKAIELSLKEQEKQ 183 (462)
T ss_pred cccccHHHHHHHHHhhHHHHhhc
Confidence 34578999999999999875443
No 257
>smart00523 DWA Domain A in dwarfin family proteins.
Probab=28.24 E-value=1.3e+02 Score=25.87 Aligned_cols=36 Identities=42% Similarity=0.562 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCC--CceEEEeCC
Q 020031 50 KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPP 103 (332)
Q Consensus 50 ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~--~Shlv~VP~ 103 (332)
++.+.+|-|+||+. -|+.|+.+|.+.+ .+-.|+||+
T Consensus 7 ~k~~~sL~KklK~k------------------~le~L~~AV~s~g~~~t~CV~i~~ 44 (109)
T smart00523 7 KKATESLLKKLKKK------------------QLEELLQAVESKGGPPTRCVLIPR 44 (109)
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHcCCCCCCCeEEeCc
Confidence 56677888999872 4899999999754 578999986
No 258
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=28.20 E-value=3.6e+02 Score=23.18 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=45.6
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhc-cceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeC----CCCchhhHH
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP----PGPNALSDV 111 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKn-nVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP----~G~~~LsD~ 111 (332)
|+==||+..+....+..|+.+|++. ++.|. ++|=|.. .+.|...++.+-..+-.+++.|| +|.|+--|+
T Consensus 5 lvgHGSR~~~~~~~~~~la~~l~~~~~~~v~-~afle~~---~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~Di 78 (125)
T cd03415 5 IITHGSRRNTFNEDMEEWAAYLERKLGVPVY-LTYNEYA---EPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDI 78 (125)
T ss_pred EEecCCCChHHHHHHHHHHHHHHhccCCceE-EEEeecC---CCCHHHHHHHHHHCCCCEEEEehhhccCCcchHHHH
Confidence 3344899999999999999999742 33332 3554433 24477777776655667888887 355554444
No 259
>PRK01355 azoreductase; Reviewed
Probab=27.78 E-value=3e+02 Score=24.69 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=28.6
Q ss_pred ceEEEEecCCCc--c--cHHHHHHHHHHhhhc--cceeeEEEecCC
Q 020031 36 QRIIVFVGSPIK--H--EKKVLEMIGRKLKKN--SVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~--~--dek~L~klaKkLKKn--nVavDII~FGe~ 75 (332)
+||+++.|||-. . +..-+..+.+.+++. +..|+++..-+.
T Consensus 2 ~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~ 47 (199)
T PRK01355 2 SKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNET 47 (199)
T ss_pred CeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 589999999972 2 345556677778874 477888877654
No 260
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=27.72 E-value=15 Score=35.04 Aligned_cols=20 Identities=30% Similarity=0.709 Sum_probs=16.7
Q ss_pred CCCCChHHHHHHHHhhccCC
Q 020031 295 VDPEDPSVKDVLTSMQNQSE 314 (332)
Q Consensus 295 VDpnd~~i~~al~~l~~~~~ 314 (332)
|||.||+.+..|..+-++.+
T Consensus 173 vDprdprF~eml~~kEkeeK 192 (217)
T PF10147_consen 173 VDPRDPRFQEMLQEKEKEEK 192 (217)
T ss_pred CCCCChHHHHHHHHHHHHHH
Confidence 79999999999987765543
No 261
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=27.70 E-value=1.7e+02 Score=29.72 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 49 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 49 dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
..+...+++++|+++++.|++. +.. .+|.+-+...+...-.+++.|-.
T Consensus 337 ~~~~a~~ia~~LR~~Gi~veid-~~~------~~l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 337 AQKKGWEIIQFLEKQNIKFELD-LSS------SNFHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred HHHHHHHHHHHHHhCCCeEEEe-eCC------CCHHHHHHHHHHcCCCEEEEEec
Confidence 4567889999999999999984 321 22455555665544456666543
No 262
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.61 E-value=3e+02 Score=28.75 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 17 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.|..||...+++-. +....||+||+|.= .+=-+=.-+|+.|+..++.|+|+..|...
T Consensus 42 AG~ava~~i~~~~~-~~~~~~VlVlcG~G--NNGGDGlv~AR~L~~~G~~V~v~~~~~~~ 98 (462)
T PLN03049 42 AGLSVASAIAEVYS-PSEYRRVLALCGPG--NNGGDGLVAARHLHHFGYKPSICYPKRTD 98 (462)
T ss_pred HHHHHHHHHHHhcc-cccCCEEEEEECCC--CCHHHHHHHHHHHHHCCCceEEEEECCCC
Confidence 46777877665432 22235788888875 34455677899999999999999998654
No 263
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=27.41 E-value=1.3e+02 Score=26.90 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=22.9
Q ss_pred CccccceEEEEecCCCcccH-HHHHHHHHHhh
Q 020031 31 NKKQQQRIIVFVGSPIKHEK-KVLEMIGRKLK 61 (332)
Q Consensus 31 nK~~~qRIIvFVGSPi~~de-k~L~klaKkLK 61 (332)
.-+.|=||+||.|....... ..|.++++.|.
T Consensus 57 ~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~ 88 (169)
T PF07976_consen 57 PSDGRFRILVFAGDISLPEQLSRLSALADYLE 88 (169)
T ss_dssp -SSS-EEEEEEEETTTTCHCCCHHHHHHHHHH
T ss_pred ccCCCEEEEEEeCCCccchhHHHHHHHHHHHH
Confidence 34568899999999988432 57888888884
No 264
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=27.39 E-value=1.9e+02 Score=22.67 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=45.4
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+.-+++.|...|.++-++-+...+--... ..|.|++=.|.+.. | -..|..+.++++++|+.+-+++-
T Consensus 9 ~~vi~l~G~L~f~~~~~~~~~l~~~~~~~--~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~ 79 (106)
T TIGR02886 9 VLIVRLSGELDHHTAERVRRKIDDAIERR--PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNV 79 (106)
T ss_pred EEEEEEecccchhhHHHHHHHHHHHHHhC--CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 34468899999998877766554432111 24566666666652 3 46788999999999987776653
No 265
>PRK06242 flavodoxin; Provisional
Probab=27.27 E-value=2e+02 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=19.7
Q ss_pred ceEEEEecCC-CcccHHHHHHHHHHhh
Q 020031 36 QRIIVFVGSP-IKHEKKVLEMIGRKLK 61 (332)
Q Consensus 36 qRIIvFVGSP-i~~dek~L~klaKkLK 61 (332)
+||+++.+|+ --.+++-...|++.|.
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~ 27 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD 27 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 4677888888 4678887888888773
No 266
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=27.11 E-value=1.1e+02 Score=31.66 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=51.1
Q ss_pred cccceEEEEecCCCc-----ccHHHHHHHHHHhhhcccee-eE-------EEecCCCCCcHHH-HHHHHHHHhcC--CCc
Q 020031 33 KQQQRIIVFVGSPIK-----HEKKVLEMIGRKLKKNSVAL-DI-------VNFGEDDEGNTEK-LEALLAAVNNN--DSS 96 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~-----~dek~L~klaKkLKKnnVav-DI-------I~FGe~~~~n~~k-L~~fi~~vN~~--~~S 96 (332)
..-.-+=+|+++|-. .+.++...+.+.+++.|+.+ .| ||++..+.+-.++ ++.|.+.+.-- =+.
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa 232 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGI 232 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345678899999965 46788999999999998753 23 7777655233333 56677777532 267
Q ss_pred eEEEeCCCCc
Q 020031 97 HLVHVPPGPN 106 (332)
Q Consensus 97 hlv~VP~G~~ 106 (332)
.+|+|-||..
T Consensus 233 ~~VV~HPGs~ 242 (413)
T PTZ00372 233 KLYNFHPGST 242 (413)
T ss_pred CEEEECCCcC
Confidence 7788877753
No 267
>PF03180 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR004872 This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to IPR001638 from INTERPRO which are solute binding proteins.; PDB: 4EF2_A 4EF1_B 3GXA_C 3IR1_D 3TQW_A 3K2D_B 3UP9_A 1XS5_A 1P99_A.
Probab=27.00 E-value=33 Score=32.53 Aligned_cols=56 Identities=27% Similarity=0.436 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHH-----------HHHHHHHHhcCCCceEEEeCCC
Q 020031 49 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK-----------LEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 49 dek~L~klaKkLKKnnVavDII~FGe~~~~n~~k-----------L~~fi~~vN~~~~Shlv~VP~G 104 (332)
..+-+..+.++|||.++.|.||.|-+-...|... =..|.+..|...+.+|+.|-+.
T Consensus 10 ~~~i~~~v~~~~~~~Gi~vevv~f~D~~~~N~AL~~G~iDaN~fQh~~yl~~~n~~~~~~L~~v~~~ 76 (237)
T PF03180_consen 10 DAEILEAVKEKLKKKGIDVEVVEFSDYVQPNEALADGEIDANFFQHIPYLEQFNKENGYNLVPVGPT 76 (237)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEESSTTHHHHHHHTTSSSEEEEEEHHHHHHHHHHHT--EEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEecchhhcChHHHCCCcceeccCCHHHHHHHHHHCCCcEEEecce
Confidence 3445667999999999999999995544333211 1356666665567777766553
No 268
>PRK08589 short chain dehydrogenase; Validated
Probab=26.98 E-value=1.5e+02 Score=27.12 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+|+|-..+ . .-|+||+|... ..+--| ..|++.|.+.+|.|-.|+.|-..
T Consensus 113 ~n~~~~~~~~~~~~~~~~~~--~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~ 188 (272)
T PRK08589 113 VDMRGTFLMTKMLLPLMMEQ--G-GSIINTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIE 188 (272)
T ss_pred HHhHHHHHHHHHHHHHHHHc--C-CEEEEeCchhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccc
Confidence 45667778888888875422 2 34667777432 123233 34566667778999999988765
No 269
>PRK12742 oxidoreductase; Provisional
Probab=26.96 E-value=2e+02 Score=25.03 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc------------ccH----HHHHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK------------HEK----KVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~------------~de----k~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+++.+++|-. + +.| |+|++|-.. ..+ .-...+++.+++.+|.|-+|.-|-..
T Consensus 105 ~n~~~~~~l~~~~~~~~~-~--~g~-iv~isS~~~~~~~~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~ 180 (237)
T PRK12742 105 INIHAPYHASVEAARQMP-E--GGR-IIIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPID 180 (237)
T ss_pred HHHHHHHHHHHHHHHHHh-c--CCe-EEEEeccccccCCCCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCccc
Confidence 456666777777777752 1 234 555555321 111 22234566777777888888777654
No 270
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=26.88 E-value=47 Score=26.29 Aligned_cols=57 Identities=26% Similarity=0.311 Sum_probs=37.4
Q ss_pred cCCCcccHHHHHHHHHHhhhccc-eeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 43 GSPIKHEKKVLEMIGRKLKKNSV-ALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 43 GSPi~~dek~L~klaKkLKKnnV-avDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
||.-..-...+..++.+|++..- .|. +.|=+... +-|..-++.+-..+.++++.||=
T Consensus 2 GSr~~~~~~~~~~la~~l~~~~~~~v~-~~fle~~~---P~l~~~l~~l~~~g~~~ivvvP~ 59 (105)
T PF01903_consen 2 GSRDPEANAELEDLADRLRERLPVPVE-VAFLEFAE---PSLEEALERLVAQGARRIVVVPY 59 (105)
T ss_dssp STSSCHHHHHHHHHHHHHHHHTSSEEE-EEESSCCC---SCCHHCCHHHHCCTCSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCeEE-EEEEecCC---CCHHHHHHHHHHcCCCeEEEEee
Confidence 67776778899999999999765 333 45644221 22444444544457789999973
No 271
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.85 E-value=3e+02 Score=22.69 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=39.6
Q ss_pred EEEe--cCCCcccHHHHHHHHHHhhhcc-ceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 39 IVFV--GSPIKHEKKVLEMIGRKLKKNS-VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 39 IvFV--GSPi~~dek~L~klaKkLKKnn-VavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
|+|| ||+... ...+..|+.+||+.. ..| .+.|=| +.+.|+..++.+...+-.+++.||=
T Consensus 3 illvgHGSr~~~-~~~~~~l~~~l~~~~~~~v-~~~~lE----~~P~i~~~l~~l~~~G~~~i~lvPl 64 (103)
T cd03413 3 VVFMGHGTDHPS-NAVYAALEYVLREEDPANV-FVGTVE----GYPGLDDVLAKLKKAGIKKVTLMPL 64 (103)
T ss_pred EEEEECCCCchh-hhHHHHHHHHHHhcCCCcE-EEEEEc----CCCCHHHHHHHHHHcCCCEEEEEeh
Confidence 5566 688876 588999999998754 223 234433 2344777777776666778888873
No 272
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=26.80 E-value=1.9e+02 Score=25.45 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHhhhcCCc-cccceEEEEecCCCc------------ccHHHH----HHHHHHhhhccceeeEEEecCC
Q 020031 13 LNLAAGIQVAQLALKHRQNK-KQQQRIIVFVGSPIK------------HEKKVL----EMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK-~~~qRIIvFVGSPi~------------~dek~L----~klaKkLKKnnVavDII~FGe~ 75 (332)
+++...+.+++.++++...+ ..+...|+|++|.-. ..+-.+ ..|++.|.+.||.|=+|..|-.
T Consensus 111 ~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v 190 (248)
T PRK06947 111 TNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLI 190 (248)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCc
Confidence 44555566777677664321 122456777777311 122222 3355666666777777777765
Q ss_pred C
Q 020031 76 D 76 (332)
Q Consensus 76 ~ 76 (332)
.
T Consensus 191 ~ 191 (248)
T PRK06947 191 E 191 (248)
T ss_pred c
Confidence 4
No 273
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=26.80 E-value=1.2e+02 Score=29.79 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=27.4
Q ss_pred HHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhcc
Q 020031 20 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNS 64 (332)
Q Consensus 20 qiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnn 64 (332)
.|++||.=|-.+. ..+-|+|+|+|+.....-...+..-++-.+
T Consensus 217 nIg~lA~~~a~~~--~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~ 259 (279)
T TIGR00555 217 NIGQIAYLCALRY--NIDRIVFIGSFLRNNQLLMKVLSYATNFWS 259 (279)
T ss_pred HHHHHHHHHHHHc--CCCeEEEECCcccCCHHHHHHHHHHHhhcC
Confidence 4667776444332 344599999999876655555655555444
No 274
>TIGR00930 2a30 K-Cl cotransporter.
Probab=26.44 E-value=2.1e+02 Score=32.57 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHhhhcCC--ccccceEEEEecCCCcccHHHHHHHHHHhhhc---cceeeEEEecCCCCCcHHHHHHH
Q 020031 12 ELNLAAGIQVAQLALKHRQN--KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKN---SVALDIVNFGEDDEGNTEKLEAL 86 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqn--K~~~qRIIvFVGSPi~~dek~L~klaKkLKKn---nVavDII~FGe~~~~n~~kL~~f 86 (332)
+.....-.+-+.|-|.+++. ||-|-+|+|+++.| .....|+.++..|||+ -|...|+. |+.. .+.+.++.-
T Consensus 550 ~~~~~~~a~~~ll~l~~~~~h~knwrPqiLvl~~~p--~~~~~Ll~f~~~l~~~~gl~i~~~v~~-~~~~-~~~~~~~~~ 625 (953)
T TIGR00930 550 QALSYSLALYSLLRLEEVEDHVKNWRPQCLVLTGPP--VCRPALLDFASQFTKGKGLMICGSVIQ-GPRL-ECVKEAQAA 625 (953)
T ss_pred HHHHHHHHHHHHHhccCCCCCccccCCeEEEEeCCC--cCcHHHHHHHHHhccCCcEEEEEEEec-Cchh-hhHHHHHHH
Q ss_pred HHHHh
Q 020031 87 LAAVN 91 (332)
Q Consensus 87 i~~vN 91 (332)
.+..+
T Consensus 626 ~~~~~ 630 (953)
T TIGR00930 626 EAKIQ 630 (953)
T ss_pred HHHHH
No 275
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.31 E-value=58 Score=31.20 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEecCC-------------------CCCcHHHHHHHHHHHhcCCCceEEEe
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNFGED-------------------DEGNTEKLEALLAAVNNNDSSHLVHV 101 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~FGe~-------------------~~~n~~kL~~fi~~vN~~~~Shlv~V 101 (332)
.+.+++..+++++++++|.+|+|.+--. +.++=+-...||+.+... +-|++.+
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~-G~k~v~~ 93 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDR-GLKVTLN 93 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHC-CCEEEEE
Confidence 3678899999999999999999977211 112234578999999754 5566654
No 276
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=26.24 E-value=37 Score=31.79 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=40.2
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
-=||++|-|+....+-|.+++..|+++.|-+||-+ .....++.+-+..- ...+||.+-|
T Consensus 46 ~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~S------vK~~~~~~~~~~~~--~~~~~v~~HP 104 (258)
T PF02153_consen 46 ADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGS------VKAPIVEAMERLLP--EGVRFVGGHP 104 (258)
T ss_dssp CSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S-------CHHHHHHHHHHHT--SSGEEEEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCC------CCHHHHHHHHHhcC--cccceeecCC
Confidence 35889999999999999999999999999999843 34567777766552 4556655433
No 277
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=26.23 E-value=2e+02 Score=27.37 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=36.6
Q ss_pred cceEEEEecCCCc---ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEE
Q 020031 35 QQRIIVFVGSPIK---HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLV 99 (332)
Q Consensus 35 ~qRIIvFVGSPi~---~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv 99 (332)
....|+|||.=.. -.-..|++...++++ .+.++.+|+.. ..+.|+.+++..+-.++-+|+
T Consensus 179 ~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~---~~~l~ivG~g~--~~~~l~~~~~~~~l~~~v~f~ 241 (359)
T PRK09922 179 KPAVFLYVGRLKFEGQKNVKELFDGLSQTTG---EWQLHIIGDGS--DFEKCKAYSRELGIEQRIIWH 241 (359)
T ss_pred CCcEEEEEEEEecccCcCHHHHHHHHHhhCC---CeEEEEEeCCc--cHHHHHHHHHHcCCCCeEEEe
Confidence 3467889996211 123455555556654 46788888755 367899999887543443443
No 278
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=26.13 E-value=3.6e+02 Score=26.30 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=42.7
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC-CCcHHHHHHHHHHHhcC---CCceEEEeCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD-EGNTEKLEALLAAVNNN---DSSHLVHVPPG 104 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~-~~n~~kL~~fi~~vN~~---~~Shlv~VP~G 104 (332)
+|++++.+.-+.. .-..++.+.|++.++.+.++.|.... ..+.+.++..++.+... ..+.+|-|=-|
T Consensus 25 ~~~livtd~~~~~--~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGG 95 (345)
T cd08195 25 SKILIVTDENVAP--LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGG 95 (345)
T ss_pred CeEEEEECCchHH--HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECCh
Confidence 5777766655443 56678888899999888877774322 14566677766666543 23556655444
No 279
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=26.08 E-value=3e+02 Score=21.21 Aligned_cols=63 Identities=25% Similarity=0.310 Sum_probs=40.6
Q ss_pred EEEecCCCc-ccHHHHHHHHHHhhhcc--ceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 39 IVFVGSPIK-HEKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 39 IvFVGSPi~-~dek~L~klaKkLKKnn--VavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
++-=|||.. .-...+.+++.+|++.. ..| .+.|=+. +.+-+...++.+-..+-.+++.+|-.+
T Consensus 4 lv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v-~~a~~~~---~~P~i~~~l~~l~~~g~~~vvvvPl~~ 69 (101)
T cd03409 4 VVGHGSPYKDPYKKDIEAQAHNLAESLPDFPY-YVGFQSG---LGPDTEEAIRELAEEGYQRVVIVPLAP 69 (101)
T ss_pred EEECCCCCCccHHHHHHHHHHHHHHHCCCCCE-EEEEECC---CCCCHHHHHHHHHHcCCCeEEEEeCcc
Confidence 334468876 55678888888887753 333 2455444 124566677777555668999999754
No 280
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=26.07 E-value=3.2e+02 Score=22.96 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=48.7
Q ss_pred HHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEE
Q 020031 21 VAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVH 100 (332)
Q Consensus 21 iA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~ 100 (332)
|..++.||+.+. ++ .-++.+.+-.-..|.+.|++.++.+-|+-+.... +...+.+.+.-.++++ .|.
T Consensus 35 i~~~~~~~~~~~-----~~---~E~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-~K~~Ri~~~~p~~e~G----~V~ 101 (142)
T TIGR01630 35 VIRLLNAHRVNL-----AI---IESNQEGKSFGRSLVKILKEKGIRTPARAVYPSG-DKETRILSVAPWVEAG----NVF 101 (142)
T ss_pred HHHHHHHcCCcc-----ee---eeccccchHHHHHHHHHHHhhCCCCCceeeCCCC-ChHHhhhccHHHHHcC----eEe
Confidence 456666776433 11 2233355555567888888888888888887655 5666677766666432 555
Q ss_pred eCCC-C--chhhHHhhhcC
Q 020031 101 VPPG-P--NALSDVLLSTP 116 (332)
Q Consensus 101 VP~G-~--~~LsD~l~sSp 116 (332)
+|.. | ..|-+-|.+-|
T Consensus 102 ~~~~~~~~~~l~~el~~Fp 120 (142)
T TIGR01630 102 PPNWAPWWPDLIQALEAFP 120 (142)
T ss_pred CCCcchhHHHHHHHHHhcc
Confidence 5553 2 22444444444
No 281
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.96 E-value=1.2e+02 Score=30.17 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=32.7
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC-CcHHHHHHH
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE-GNTEKLEAL 86 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~-~n~~kL~~f 86 (332)
...++|||+-+ .+....|.+.|+++++.+.++. |+... +-...|+.|
T Consensus 254 ~~~~~lVF~~t-----~~~~~~l~~~L~~~g~~v~~lh-g~~~~~~R~~~l~~F 301 (423)
T PRK04837 254 WPDRAIIFANT-----KHRCEEIWGHLAADGHRVGLLT-GDVAQKKRLRILEEF 301 (423)
T ss_pred CCCeEEEEECC-----HHHHHHHHHHHHhCCCcEEEec-CCCChhHHHHHHHHH
Confidence 35689999964 5778899999999999887765 54431 223445555
No 282
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.68 E-value=1.5e+02 Score=25.90 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.1
Q ss_pred HHHHHHhhhccceeeEEEecCCCCCcH
Q 020031 54 EMIGRKLKKNSVALDIVNFGEDDEGNT 80 (332)
Q Consensus 54 ~klaKkLKKnnVavDII~FGe~~~~n~ 80 (332)
..|+++|.+....++|||+|-.. .++
T Consensus 29 ~~L~~~l~~~~~~~~viN~Gv~G-~tt 54 (208)
T cd01839 29 GVLEKALGANGENVRVIEDGLPG-RTT 54 (208)
T ss_pred HHHHHHHccCCCCeEEEecCcCC-cce
Confidence 56888898877889999999877 444
No 283
>PRK14974 cell division protein FtsY; Provisional
Probab=25.59 E-value=1.1e+02 Score=30.59 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=37.0
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC-CCcHHHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD-EGNTEKLEALLAAV 90 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~-~~n~~kL~~fi~~v 90 (332)
+.+||+|+|.|=.--.-.+.+||..|++++..|=+|. ++.- ..-.+.|..+.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~-~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA-GDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec-CCcCcHHHHHHHHHHHHHc
Confidence 5689999997655555668999999999987776654 3321 01235566666654
No 284
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.56 E-value=4.8e+02 Score=25.75 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=51.8
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 114 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~s 114 (332)
++.++.-.+-..+.-=.....|..++-+|.+.++.|.+.. ..+.|...|+.+|.+++-| ||-.|--.++-.+.++.
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~ 109 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATT--TQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLD 109 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444444443444444556688889999999999998776 3466888899999888766 44445434555555555
Q ss_pred c
Q 020031 115 T 115 (332)
Q Consensus 115 S 115 (332)
.
T Consensus 110 ~ 110 (282)
T PRK14182 110 A 110 (282)
T ss_pred c
Confidence 4
No 285
>COG1679 Predicted aconitase [General function prediction only]
Probab=25.52 E-value=87 Score=32.53 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=31.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhcc--ceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNS--VALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnn--VavDII~FGe 74 (332)
--=++++|+|.. +-+++.+|+.-|||.+ ..+++++|--
T Consensus 289 epdli~iGcPHa-S~~E~~~la~~l~~r~~~~~~~~~V~~s 328 (403)
T COG1679 289 EPDLIALGCPHA-SLEELRRLAELLKGRKRPAGVPLYVTTS 328 (403)
T ss_pred CCCEEEeCCCCC-CHHHHHHHHHHHhccCCCCCCCEEEEcC
Confidence 335889999975 4567999999999999 9999999854
No 286
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.47 E-value=2e+02 Score=25.28 Aligned_cols=62 Identities=24% Similarity=0.181 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCC-----c------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPI-----K------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi-----~------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+++.++++-..+ ..+-|||++|-. . ..+-.+ ..+++.+.+.+|.|-+|..|-..
T Consensus 112 ~n~~~~~~~~~~~~~~~~~~--~~g~iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~ 188 (250)
T PRK08063 112 INAKALLFCAQEAAKLMEKV--GGGKIISLSSLGSIRYLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVD 188 (250)
T ss_pred HhhHHHHHHHHHHHHHHHhc--CCeEEEEEcchhhccCCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCccc
Confidence 45666778888888764321 235678887722 1 122333 34455566677888888777654
No 287
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=25.42 E-value=5.1e+02 Score=23.48 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=29.7
Q ss_pred CccccceEEEEecCCCc---ccHHHHHHHHHHhhhc-cceeeEEEecCCC
Q 020031 31 NKKQQQRIIVFVGSPIK---HEKKVLEMIGRKLKKN-SVALDIVNFGEDD 76 (332)
Q Consensus 31 nK~~~qRIIvFVGSPi~---~dek~L~klaKkLKKn-nVavDII~FGe~~ 76 (332)
+.....++|+|+|.... -.-..|.+..++|++. ...+-++..|...
T Consensus 186 ~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~ 235 (365)
T cd03825 186 GLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASD 235 (365)
T ss_pred CCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCc
Confidence 33344567777665433 3456788888888874 4566777888755
No 288
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.35 E-value=4.1e+02 Score=22.37 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=40.2
Q ss_pred cceEEEEec---CCCccc--------HHHHHHHHHHhhhccceeeEEEecCCCCCcH---HHHHHHHHHHhc
Q 020031 35 QQRIIVFVG---SPIKHE--------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNT---EKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFVG---SPi~~d--------ek~L~klaKkLKKnnVavDII~FGe~~~~n~---~kL~~fi~~vN~ 92 (332)
-+.|+++.| .+...+ .+.|.+|+..+++.+|.|-+=+.+....... +.+..|++.+++
T Consensus 85 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (213)
T PF01261_consen 85 AKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDS 156 (213)
T ss_dssp BSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTT
T ss_pred CCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCC
Confidence 445666666 343332 2467888899999999888877776653344 889999999975
No 289
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=25.34 E-value=81 Score=33.25 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=32.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..|-++.|.-|. +..+..|-+.||+++.++|+|.||--.
T Consensus 333 ~~v~Ii~gd~id--e~~i~~il~~L~~~G~~a~n~~fGvGt 371 (470)
T PHA02594 333 EHVRLIQGDGIT--LERINRILTRMKENGFASENVAFGMGG 371 (470)
T ss_pred CCeEEEEcCCCC--HHHHHHHHHHHHHCCCCCCcceEecCc
Confidence 567778887765 667889999999999999999999755
No 290
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=25.26 E-value=1.8e+02 Score=29.90 Aligned_cols=76 Identities=28% Similarity=0.392 Sum_probs=52.8
Q ss_pred cCccccHHHHHHHHHHHhhhcCCccccceEEE-EecCCCccc--------------HHHHH--------HHHHHhhhccc
Q 020031 9 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIV-FVGSPIKHE--------------KKVLE--------MIGRKLKKNSV 65 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIv-FVGSPi~~d--------------ek~L~--------klaKkLKKnnV 65 (332)
-+|++++.++|.||+=| |++-+|+++ |=.|..-.| =++|. -.-+.|||++|
T Consensus 97 ggGnnD~~k~ieiakRA------k~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi 170 (403)
T COG3867 97 GGGNNDLKKAIEIAKRA------KNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI 170 (403)
T ss_pred CCCcchHHHHHHHHHHH------HhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36899999999999877 778888876 666654322 11221 23468999999
Q ss_pred eeeEEEecCCCC----------CcHHHHHHHHHHH
Q 020031 66 ALDIVNFGEDDE----------GNTEKLEALLAAV 90 (332)
Q Consensus 66 avDII~FGe~~~----------~n~~kL~~fi~~v 90 (332)
-+|.|-.|.+.. .|-+|+..++++-
T Consensus 171 ~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g 205 (403)
T COG3867 171 LPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAG 205 (403)
T ss_pred CccceEeccccCCceeccCCCCcChHHHHHHHHHH
Confidence 999999998762 1456666666543
No 291
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=25.21 E-value=2.5e+02 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
||+|.|-+=.--.-.+..|++.|++.+..|-++.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6777774433334445677777777776664443
No 292
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.04 E-value=2.9e+02 Score=25.10 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=25.4
Q ss_pred ceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.++|+|||..... .-..|++..++|++ .+.++.+|...
T Consensus 193 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~ 231 (363)
T cd04955 193 GRYYLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNAD 231 (363)
T ss_pred CcEEEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCCC
Confidence 3467899986543 45667777777766 45666667643
No 293
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=25.01 E-value=1.6e+02 Score=28.74 Aligned_cols=44 Identities=34% Similarity=0.548 Sum_probs=32.2
Q ss_pred EEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCC
Q 020031 39 IVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND 94 (332)
Q Consensus 39 IvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~ 94 (332)
++++|-|... ....+...+. +|||+.||.. +-+..|++++..+.
T Consensus 104 ~v~~GG~~~t~~~~~~~~~~~--------~D~iv~GeGE----~~~~~~~~~~~~~~ 148 (490)
T COG1032 104 LVVVGGPEATENPEPLLDFGP--------ADIIVIGEGE----ETLPELLEALEEGE 148 (490)
T ss_pred eEEecCCCcCCCcHHHHhhcC--------CCEEEEcCch----HHHHHHHHHHhccc
Confidence 7888888764 5555555444 9999999988 56777777776543
No 294
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=25.00 E-value=1.1e+02 Score=29.66 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=34.0
Q ss_pred ceEEEEecCCCccc-HHHHHHHHHHhh---hc-cceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGSPIKHE-KKVLEMIGRKLK---KN-SVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGSPi~~d-ek~L~klaKkLK---Kn-nVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
.+=|+|||-|.... =+.|.+.-..|+ ++ -+-|+|++.|.-. .+.+..|+...
T Consensus 92 ~~~va~vGtPCqi~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s---~~~~~~~l~~~ 148 (275)
T TIGR03289 92 LEKIGTVGTPCQVMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFP---YESLKTFINDK 148 (275)
T ss_pred CCEEEEEccchHHHHHHHHHhccccccccccceEEEEeeeCCCCCC---HHHHHHHHHHh
Confidence 47799999999753 333433222223 23 4789999998665 46788888654
No 295
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=24.96 E-value=1.1e+02 Score=28.91 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=25.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+||++++| ...-.+..+..|++.|+|.+..|.||.++.
T Consensus 2 ~~i~i~~~-g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGG-GTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcC-cchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 56666654 123444567788888888888887777643
No 296
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=24.93 E-value=1.7e+02 Score=23.65 Aligned_cols=53 Identities=15% Similarity=0.367 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhcCCccccceEEEEecCCCcc-c-HHHHHH---HHHHhhhccceeeEEEecC
Q 020031 18 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E-KKVLEM---IGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 18 gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d-ek~L~k---laKkLKKnnVavDII~FGe 74 (332)
.|+-|.|++.++.+...+ +||+--+.. + ++-+-. +++..-.++..||+|.+=.
T Consensus 33 ~V~~Ayl~~~~~~~~~~~----~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd~~~~~~ 90 (108)
T PF14581_consen 33 NVRAAYLALMQDEDEQPS----LLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVDFVLLDD 90 (108)
T ss_pred cHHHhHHHHhhccCCCce----EEEEEeccChhHHHHHHHHHHHhhhcCCCCceEEEEEccC
Confidence 488899999999444333 444433333 3 333334 4444446778999998854
No 297
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=24.72 E-value=2e+02 Score=25.85 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~ 75 (332)
+++...+.+.+.+++|-..+ +..-|+|++|-.. ..+--+ ..|++.|...+|.|-+|+.|-.
T Consensus 116 ~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~ 191 (266)
T PRK06171 116 INQKGVFLMSQAVARQMVKQ--HDGVIVNMSSEAGLEGSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGIL 191 (266)
T ss_pred hhchhHHHHHHHHHHHHHhc--CCcEEEEEccccccCCCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccc
Confidence 45566677777777764321 1234667766321 122222 3456666667888888888854
No 298
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=24.61 E-value=93 Score=30.58 Aligned_cols=59 Identities=20% Similarity=0.472 Sum_probs=41.1
Q ss_pred ecCCCcc-cHHHHHHHHHHhhhccceeeEEE---ecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCc
Q 020031 42 VGSPIKH-EKKVLEMIGRKLKKNSVALDIVN---FGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPN 106 (332)
Q Consensus 42 VGSPi~~-dek~L~klaKkLKKnnVavDII~---FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~ 106 (332)
=|||+.. ++++..+|.++|.+.++.+.|.. ||.-. ++.-++.+...+-.++|.+|=-|+
T Consensus 63 ~~SPL~~~t~~qa~~l~~~L~~~~~~~~V~~amry~~P~------i~~~l~~l~~~g~~~ivvlPLyPq 125 (316)
T PF00762_consen 63 GGSPLNEITRRQAEALQQRLDERGVDVEVYYAMRYGPPS------IEDALEELKADGVDRIVVLPLYPQ 125 (316)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH-EEEEEEEEESSSSSB------HHHHHHHHHHTT-SEEEEEESSSS
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCeeEEEEeccCCCC------HHHHHHHHHHcCCCeEEEEeCCCc
Confidence 5899975 89999999999999875555443 23333 455555555567789999998775
No 299
>PLN02476 O-methyltransferase
Probab=24.59 E-value=1.5e+02 Score=29.05 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcccee-e-EEEecCCCC-----CcHHHHHHHHHHHhcCCCceEEEeCCCCc
Q 020031 53 LEMIGRKLKKNSVAL-D-IVNFGEDDE-----GNTEKLEALLAAVNNNDSSHLVHVPPGPN 106 (332)
Q Consensus 53 L~klaKkLKKnnVav-D-II~FGe~~~-----~n~~kL~~fi~~vN~~~~Shlv~VP~G~~ 106 (332)
+..+-+.|++.+|-| | |+..|...+ ..+..+..|++.|...+.=..+.+|-|..
T Consensus 211 ~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDG 271 (278)
T PLN02476 211 FELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDG 271 (278)
T ss_pred HHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCe
Confidence 455567788888755 4 555676421 23567999999998777766666776643
No 300
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=24.44 E-value=2.4e+02 Score=24.39 Aligned_cols=49 Identities=12% Similarity=-0.078 Sum_probs=32.0
Q ss_pred eEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
-||.|. |.+....-..|.++.++++..||.|=.|+. +..+.+..|....
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~-----d~~~~~~~~~~~~ 84 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST-----DSHFSHLAWRNTP 84 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec-----CCHHHHHHHHHhh
Confidence 455665 234445778899999999988876644442 2345666777665
No 301
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.37 E-value=2.6e+02 Score=23.89 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=34.3
Q ss_pred EEEecCCCcc------cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 39 IVFVGSPIKH------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 39 IvFVGSPi~~------dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
|+|+|.=|.. ..--...+++++++.+-.|.|+|+|-....-...+..|...+
T Consensus 4 i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~ 61 (193)
T cd01835 4 LIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEW 61 (193)
T ss_pred EEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHH
Confidence 5566776652 233456778888777778999999987733345556666555
No 302
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=24.31 E-value=1.4e+02 Score=27.13 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=25.2
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhh
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKK 62 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKK 62 (332)
++..+.+-|.|...-+++++.+|.++|+|
T Consensus 105 ~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k 133 (178)
T COG0712 105 SRGIVEAEVTSAFELSDEQLTKLEAKLEK 133 (178)
T ss_pred hcCceEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 36688999999999999999998888876
No 303
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.29 E-value=3.6e+02 Score=26.67 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=52.1
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEe--CCCCchhhHHhhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 114 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~V--P~G~~~LsD~l~s 114 (332)
++.++.-..-..+.-=....-|..++-+|.+.++.|-+.. ..+.|...|..+|..++-|=+-| |--+++-...+++
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~ 108 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPEST--SQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLE 108 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444443445555566778889999999999998766 34668899999998877664444 5444554555554
Q ss_pred c
Q 020031 115 T 115 (332)
Q Consensus 115 S 115 (332)
.
T Consensus 109 ~ 109 (287)
T PRK14173 109 A 109 (287)
T ss_pred c
Confidence 4
No 304
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=24.25 E-value=1.1e+02 Score=26.80 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=25.8
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|+||+.-..-...-+..|++.|++.+..|+|+.+....
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 34444443345667778888888888888888876554
No 305
>PRK07308 flavodoxin; Validated
Probab=24.21 E-value=1.5e+02 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=33.4
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|.|+.+|+-..+++-...|++.|++.++.++++...+..
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~ 42 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVD 42 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCC
Confidence 4677789988899999999999999999988887775443
No 306
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.19 E-value=82 Score=24.79 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHH
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGR 58 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaK 58 (332)
++|-++|.+|+ -|+|-- |-||+=|+..++ ++..|+-
T Consensus 7 v~LR~~lE~A~-~La~~G--------IRFVpiPv~~de-e~~~L~s 42 (61)
T PF07131_consen 7 VDLRKALEMAH-SLAHIG--------IRFVPIPVVTDE-EFHTLSS 42 (61)
T ss_pred HHHHHHHHHHH-HHHHcC--------ceeeccccccHH-HHHHHHH
Confidence 56888999999 666543 789999987654 3444443
No 307
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=24.13 E-value=1.1e+02 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=27.9
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..++|||+.+ .+....|++.|++.++.+..+. |...
T Consensus 242 ~~~~lVF~~t-----~~~~~~l~~~L~~~~~~v~~~h-g~~~ 277 (460)
T PRK11776 242 PESCVVFCNT-----KKECQEVADALNAQGFSALALH-GDLE 277 (460)
T ss_pred CCceEEEECC-----HHHHHHHHHHHHhCCCcEEEEe-CCCC
Confidence 4679999854 7888999999999998876554 5544
No 308
>COG4907 Predicted membrane protein [Function unknown]
Probab=24.12 E-value=30 Score=36.90 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcC--CCceEEEeCC
Q 020031 81 EKLEALLAAVNNN--DSSHLVHVPP 103 (332)
Q Consensus 81 ~kL~~fi~~vN~~--~~Shlv~VP~ 103 (332)
+.+++.-.++-.. -.||++.|-.
T Consensus 527 kVvkam~~~~~~e~ikds~~~i~h~ 551 (595)
T COG4907 527 KVVKAMRKALDMEIIKDSYSPIFHN 551 (595)
T ss_pred HHHHHHHHhCcHhHhcccceeEEec
Confidence 5555554444321 2567777754
No 309
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=24.11 E-value=2.4e+02 Score=24.07 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=39.4
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
|-|-|+|-..+ .-|.-+.|+.++|...+|+|.+.. -..+.|..|++.+.
T Consensus 3 itiy~~p~C~t---~rka~~~L~~~gi~~~~~~y~~~~-~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNCST---CRKALAWLEEHGIEYTFIDYLKTP-PSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCCChH---HHHHHHHHHHcCCCcEEEEeecCC-CCHHHHHHHHHHcC
Confidence 55667776653 345557789999999999999988 78899999998875
No 310
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.92 E-value=4.9e+02 Score=25.76 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=54.7
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHh
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVL 112 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l 112 (332)
+-+++++.-.+-..+.-=.....|..++-+|.+.++.|.+.. ..+-|...|+.+|..++-| ||-.|--.++=...+
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i 108 (295)
T PRK14174 31 VPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADT--TEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAV 108 (295)
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 345655555554556666677788899999999999998776 3566888999999877655 555564345444545
Q ss_pred hhc
Q 020031 113 LST 115 (332)
Q Consensus 113 ~sS 115 (332)
++.
T Consensus 109 ~~~ 111 (295)
T PRK14174 109 TLA 111 (295)
T ss_pred Hhc
Confidence 544
No 311
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=23.84 E-value=2.2e+02 Score=22.18 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=51.3
Q ss_pred ccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
.-+|.-.+-+++++|-|+ .-.|.+..+. -..|-|.+..|-.-=-+.+-.|-|+..|+..++-.+.|..|++
T Consensus 12 ~GlHaRpa~~lv~~a~~~------~~~i~i~~~~-~~vdakSil~l~~L~~~~G~~i~i~~~G~de~~a~~~i~~~~~ 82 (84)
T PF00381_consen 12 NGLHARPAAELVQIASKF------DSDITIRKGG-KTVDAKSILGLMSLGAKKGDEIEIEAEGEDEEEALEAIAEFLE 82 (84)
T ss_dssp TSSSHHHHHHHHHHHHTS------SSEEEEEETT-EEEETTSHHHHHHHTBSTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhhC------CCEEEEEeCc-eeEecCCHHHHhhhhcCCCCEEEEEEECcCHHHHHHHHHHHHh
Confidence 346777788899999777 5567777776 4457777777766667788889999999877444556666654
No 312
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.82 E-value=2.4e+02 Score=24.92 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCC-----c------cc----HHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPI-----K------HE----KKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi-----~------~d----ek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.++...+.+.+.++++-.+++ +.+.|+|++|-. . .. +.-+..+++.++..+|.+-+|..|-..
T Consensus 117 ~n~~~~~~~~~~~~~~~~~~~-~~~~vv~~ss~~~~~~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~ 194 (264)
T PRK12829 117 VNLNGQFYFARAAVPLLKASG-HGGVIIALSSVAGRLGYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVR 194 (264)
T ss_pred HHhHHHHHHHHHHHHHHHhCC-CCeEEEEecccccccCCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcC
Confidence 344555666666666544332 325566676621 1 12 223455666666678888888888664
No 313
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=23.81 E-value=2.3e+02 Score=29.52 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=46.2
Q ss_pred ceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHhhh
Q 020031 36 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLS 114 (332)
Q Consensus 36 qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~s 114 (332)
...|+|||.=... .-..|++..++|++..-.+.++.+|... . .+.|+.+++..+-.+ ++..++ ..-+.+.+-.
T Consensus 319 ~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~-~-~~~l~~~i~~~~l~~--~V~f~G--~~~~~~~~~~ 392 (500)
T TIGR02918 319 PFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGG-E-KQKLQKIINENQAQD--YIHLKG--HRNLSEVYKD 392 (500)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECch-h-HHHHHHHHHHcCCCC--eEEEcC--CCCHHHHHHh
Confidence 3479999984432 4466888888888776566666778655 2 467888887764322 222222 2235555555
Q ss_pred cCcc
Q 020031 115 TPIF 118 (332)
Q Consensus 115 SpI~ 118 (332)
+-|+
T Consensus 393 adv~ 396 (500)
T TIGR02918 393 YELY 396 (500)
T ss_pred CCEE
Confidence 5443
No 314
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=23.73 E-value=1.2e+02 Score=22.81 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=23.1
Q ss_pred EecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 41 FVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 41 FVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+.+.|- ...-+.+|-..|.+.+|.||+|++.
T Consensus 6 v~~~~~--~~~~~a~if~~La~~~InvDmI~~~ 36 (67)
T cd04914 6 VKAKDN--ENDLQQRVFKALANAGISVDLINVS 36 (67)
T ss_pred EecCCC--CccHHHHHHHHHHHcCCcEEEEEec
Confidence 445552 2445777899999999999999664
No 315
>PLN02757 sirohydrochlorine ferrochelatase
Probab=23.69 E-value=1.3e+02 Score=26.71 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=37.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhc-cce-eeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKN-SVA-LDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKn-nVa-vDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
|||=-||+-..-..++.+|+.+|++. .+. |. +.|=+.. .+-|..=++.+-..+-.+++.||=
T Consensus 17 llvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~-~aFle~~---~Psl~eal~~l~~~g~~~vvVvP~ 80 (154)
T PLN02757 17 VIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVE-PAHMELA---EPSIKDAFGRCVEQGASRVIVSPF 80 (154)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-EEEEecC---CCCHHHHHHHHHHCCCCEEEEEEh
Confidence 34444699888889999999999763 232 22 3553322 233444444443345679999883
No 316
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.57 E-value=4.6e+02 Score=23.19 Aligned_cols=89 Identities=19% Similarity=0.345 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCC
Q 020031 16 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDS 95 (332)
Q Consensus 16 ~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~ 95 (332)
++|.-+..--|++-..+ ..| |.|+|+ +++.+.+++++|++.-=.++|+-+-..- -..+.....++.+|.. +
T Consensus 29 ~~g~dl~~~ll~~~~~~--~~~-v~llG~----~~~~~~~~~~~l~~~yp~l~i~g~~~g~-~~~~~~~~i~~~I~~~-~ 99 (171)
T cd06533 29 VTGSDLMPALLELAAQK--GLR-VFLLGA----KPEVLEKAAERLRARYPGLKIVGYHHGY-FGPEEEEEIIERINAS-G 99 (171)
T ss_pred cCcHHHHHHHHHHHHHc--CCe-EEEECC----CHHHHHHHHHHHHHHCCCcEEEEecCCC-CChhhHHHHHHHHHHc-C
Confidence 34445555555554433 344 455554 5788999999999998888888642222 2223344477778743 3
Q ss_pred ceEEEeCCCCchhhHHhhh
Q 020031 96 SHLVHVPPGPNALSDVLLS 114 (332)
Q Consensus 96 Shlv~VP~G~~~LsD~l~s 114 (332)
-++|.|-=|. -.-+.++.
T Consensus 100 pdiv~vglG~-PkQE~~~~ 117 (171)
T cd06533 100 ADILFVGLGA-PKQELWIA 117 (171)
T ss_pred CCEEEEECCC-CHHHHHHH
Confidence 5666665552 13444443
No 317
>PRK00654 glgA glycogen synthase; Provisional
Probab=23.37 E-value=4e+02 Score=26.84 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=36.0
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
...+|+|||.-... .-..|++..++|++.+ +.+|.+|.....-.+.|+.+++..
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~--~~lvivG~g~~~~~~~l~~l~~~~ 335 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQG--GQLVLLGTGDPELEEAFRALAARY 335 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcC--CEEEEEecCcHHHHHHHHHHHHHC
Confidence 35689999985443 4556888888888775 567777865412245677776655
No 318
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=23.34 E-value=7.5e+02 Score=24.65 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=51.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhhhc
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLST 115 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~sS 115 (332)
.|+-||. -..+.-=.....|.+++-+|...++.|.+.. ..+.|...|+.+|..++-| ||-.|--+++-.+.++..
T Consensus 43 aiI~vg~-d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~ 119 (299)
T PLN02516 43 AVVIVGS-RKDSQTYVNMKRKACAEVGIKSFDVDLPENI--SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNE 119 (299)
T ss_pred EEEEECC-ChhHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhc
Confidence 3555663 3444555566778889999999999998766 3466888999999887655 555565445555566654
No 319
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.33 E-value=7.3e+02 Score=24.68 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=52.1
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCce--EEEeCCCCchhhHHhhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSH--LVHVPPGPNALSDVLLS 114 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Sh--lv~VP~G~~~LsD~l~s 114 (332)
++.++.-.+-..+.-=.....|..++-+|.+.++.|.+.. ..+.|...|+.+|..+.-| ||-.|--+++-.+.+++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~ 111 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTI--SESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIIN 111 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4544444443455555566688899999999999998766 3567889999999877655 55556544554555555
Q ss_pred c
Q 020031 115 T 115 (332)
Q Consensus 115 S 115 (332)
.
T Consensus 112 ~ 112 (294)
T PRK14187 112 T 112 (294)
T ss_pred c
Confidence 4
No 320
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=23.32 E-value=1.4e+02 Score=25.25 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=26.9
Q ss_pred ceEEEEecCC-CcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSP-IKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSP-i~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
-+||-|+.-. -. -+.|+.++++|||++ +|+|-|+.
T Consensus 38 ~elvgf~~CgGCp--g~~~~~~~~~l~~~~--~d~IHlss 73 (107)
T PF08821_consen 38 VELVGFFTCGGCP--GRKLVRRIKKLKKNG--ADVIHLSS 73 (107)
T ss_pred eEEEEEeeCCCCC--hhHHHHHHHHHHHCC--CCEEEEcC
Confidence 6889996332 11 677999999999888 56999986
No 321
>PRK06523 short chain dehydrogenase; Provisional
Probab=23.32 E-value=2.2e+02 Score=25.32 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc------------cHHH----HHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH------------EKKV----LEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~------------dek~----L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+.+.+++|...+ ..+.|||++|.-.. .+-- ...+++.+.+.+|.|-+|.-|-..
T Consensus 109 ~n~~~~~~~~~~~~~~~~~~--~~g~ii~isS~~~~~~~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~ 186 (260)
T PRK06523 109 LNLLAAVRLDRALLPGMIAR--GSGVIIHVTSIQRRLPLPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIE 186 (260)
T ss_pred HhhHHHHHHHHHHHHHHHhc--CCcEEEEEecccccCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccc
Confidence 46667777888888775432 22457778874321 1111 123445555556666666666544
No 322
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.31 E-value=1.6e+02 Score=31.09 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=32.7
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC-CCcHHHHHHHH
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD-EGNTEKLEALL 87 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~-~~n~~kL~~fi 87 (332)
...++|||+-+ .+....|++.|++.++.|-++. |... .+-...|+.|-
T Consensus 256 ~~~k~LVF~nt-----~~~ae~l~~~L~~~g~~v~~lh-g~l~~~eR~~il~~Fr 304 (572)
T PRK04537 256 EGARTMVFVNT-----KAFVERVARTLERHGYRVGVLS-GDVPQKKRESLLNRFQ 304 (572)
T ss_pred cCCcEEEEeCC-----HHHHHHHHHHHHHcCCCEEEEe-CCCCHHHHHHHHHHHH
Confidence 35679999854 6778899999999998876655 4433 12245566663
No 323
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=23.11 E-value=2.1e+02 Score=25.67 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecCCC
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPI 46 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi 46 (332)
.+|+...+.+++++++|-.. ..| ||||+|..
T Consensus 69 ~vN~~~~~~l~~~~~~~~~~---~g~-Iv~isS~~ 99 (241)
T PRK12428 69 RVNFLGLRHLTEALLPRMAP---GGA-IVNVASLA 99 (241)
T ss_pred hhchHHHHHHHHHHHHhccC---CcE-EEEeCcHH
Confidence 45788888899999988532 134 56888854
No 324
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=23.08 E-value=1.5e+02 Score=26.66 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=35.1
Q ss_pred ceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
++|+.+.|||-. .+.+-+..+++-+++.++-+.+|.+.+.
T Consensus 1 mki~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~ 42 (207)
T COG0655 1 MKILGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEK 42 (207)
T ss_pred CeeeEEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 589999999994 4678888899999999999999999875
No 325
>PRK04155 chaperone protein HchA; Provisional
Probab=22.84 E-value=3.4e+02 Score=26.53 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEe
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~F 72 (332)
....|+..--..|++.++.|||++.
T Consensus 74 ~~~~E~~~P~~~L~~AG~eVdiAS~ 98 (287)
T PRK04155 74 NHPVETLLPMYHLHKAGFEFDVATL 98 (287)
T ss_pred ccHHHHHHHHHHHHHCCCEEEEEec
Confidence 3467888889999999999999998
No 326
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=22.64 E-value=3e+02 Score=20.86 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=37.9
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+++.|.+.|.+.-.+-+...+.-. .....+-|++=+|.+.. | -..|.++.+++++.++.|-|++.
T Consensus 13 ~~l~G~l~~~~~~~l~~~~~~~~~-~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~~ 81 (107)
T cd07042 13 YRIDGPLFFGNAEYFKDRLLRLVD-EDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAGL 81 (107)
T ss_pred EEecCceEeehHHHHHHHHHHHhc-cCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 467787777665444433333222 11123566677777753 3 35567777888888877666644
No 327
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=22.64 E-value=1.7e+02 Score=25.48 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=27.0
Q ss_pred eEEEEecCCC--cccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 37 RIIVFVGSPI--KHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 37 RIIvFVGSPi--~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
||++++.+.- .-.+..+..|++.|++.+..|.|+.+...
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4444444433 23567788899999988888888887654
No 328
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=22.59 E-value=1e+02 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=26.1
Q ss_pred ccceEEEEe-cCCCcccHHHHHHHHHHhhhccce
Q 020031 34 QQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 34 ~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVa 66 (332)
.-.+|+++| |++....++..++|+|.|-|+||=
T Consensus 93 ~I~Gv~~ivGC~n~~~~~~~~~~iakeL~k~d~L 126 (258)
T cd00587 93 TIPGVALIVGCNNDKKQDKAYADIAKELMKRGVM 126 (258)
T ss_pred CCCeEEEEEeCCCCCccchHHHHHHHHHHhCCEE
Confidence 357899999 455556678899999999998864
No 329
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=22.57 E-value=6.8e+02 Score=27.17 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=30.5
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccce----eeEEEecC--CCC-C----cHHHHHHHHHHHhcC
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVA----LDIVNFGE--DDE-G----NTEKLEALLAAVNNN 93 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVa----vDII~FGe--~~~-~----n~~kL~~fi~~vN~~ 93 (332)
..+||+|||.--.. .-..+++--.+|.++.-. +-+|..|- ... . -...+..++..+|+.
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~ 334 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGE 334 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 45799999986543 444555555554443321 33444441 110 1 134455666677754
No 330
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=22.50 E-value=1.4e+02 Score=28.34 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=28.2
Q ss_pred ceEEEEecCCCcccHHH-HHHHHHHhhhccceeeEEEe
Q 020031 36 QRIIVFVGSPIKHEKKV-LEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~-L~klaKkLKKnnVavDII~F 72 (332)
+|||.|||.+ ..-+-. +.+|+++|++.+..|-+|=.
T Consensus 1 m~vi~ivG~~-gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFK-DSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCC-CChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 5789999985 334444 48899999999999999854
No 331
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=22.50 E-value=3e+02 Score=25.55 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=60.7
Q ss_pred ccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC--------------CCcHHHHHHHHHHHhcC---C
Q 020031 32 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD--------------EGNTEKLEALLAAVNNN---D 94 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~--------------~~n~~kL~~fi~~vN~~---~ 94 (332)
+...++|+|||=.--..=++-+.+.|.-.+.-+...-+|.|.=.. ......|..|+..+... .
T Consensus 14 ~~~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~ 93 (233)
T PF05990_consen 14 KSPDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIK 93 (233)
T ss_pred hCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCc
Confidence 445789999997776666667777777666666777788885221 12367788899988755 3
Q ss_pred CceEEEeCCCCchhhHHhhhcC
Q 020031 95 SSHLVHVPPGPNALSDVLLSTP 116 (332)
Q Consensus 95 ~Shlv~VP~G~~~LsD~l~sSp 116 (332)
.=|||..-=|..++..+|-.-.
T Consensus 94 ~I~ilaHSMG~rv~~~aL~~l~ 115 (233)
T PF05990_consen 94 RIHILAHSMGNRVLLEALRQLA 115 (233)
T ss_pred eEEEEEeCchHHHHHHHHHHHH
Confidence 4588888889888888776643
No 332
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=22.34 E-value=1.2e+02 Score=28.14 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=8.3
Q ss_pred HHHHHHhhhccceeeEE
Q 020031 54 EMIGRKLKKNSVALDIV 70 (332)
Q Consensus 54 ~klaKkLKKnnVavDII 70 (332)
..|++.|++.+..|.||
T Consensus 18 ~~La~~L~~~g~eV~vv 34 (348)
T TIGR01133 18 LAVAEELIKRGVEVLWL 34 (348)
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 34555555555444444
No 333
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.32 E-value=76 Score=31.68 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=49.9
Q ss_pred cccccCccccHHH--HHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHH
Q 020031 5 AGLEIGGELNLAA--GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 82 (332)
Q Consensus 5 H~i~i~G~~~~~~--gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~k 82 (332)
|+|++-|.+.|.- +....+.-|+...+... .--+.|+.|+|...=.++-|++=+-+... ...+.
T Consensus 58 nGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~-------------~~a~kLv~lak~yGfDGw~iN~E~~~~~~-~~~~~ 123 (339)
T cd06547 58 NGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSF-------------PVADKLVEVAKYYGFDGWLINIETELGDA-EKAKR 123 (339)
T ss_pred cCCeEEEEEEecCCCchHHHHHHhccCcccch-------------HHHHHHHHHHHHhCCCceEeeeeccCCcH-HHHHH
Confidence 5677777665444 35555666654222211 12467999999999999999987766322 46799
Q ss_pred HHHHHHHHhcC
Q 020031 83 LEALLAAVNNN 93 (332)
Q Consensus 83 L~~fi~~vN~~ 93 (332)
|..|+..+...
T Consensus 124 l~~F~~~L~~~ 134 (339)
T cd06547 124 LIAFLRYLKAK 134 (339)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 334
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=22.31 E-value=4.2e+02 Score=25.81 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=42.7
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHH
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 111 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~ 111 (332)
+|++++.++.+..-- ..++-+.|+++++.+.|+.++.....+.+.++..++.+.. ..+.+|-|=-| ...|+
T Consensus 25 ~kvlivtd~~~~~~~--~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGG--sv~D~ 95 (332)
T cd08549 25 SKIMIVCGNNTYKVA--GKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSG--TIIDL 95 (332)
T ss_pred CcEEEEECCcHHHHH--HHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCc--HHHHH
Confidence 577777766554322 3778888999998887643333322356777777777755 44455555444 34554
No 335
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=22.30 E-value=1.7e+02 Score=25.84 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=35.3
Q ss_pred EEEecCCCcc-cHHHHHHHHHHhhhcc----ceeeEEEecCCCCC----------------cHHHHHHHHHHHhc-CCCc
Q 020031 39 IVFVGSPIKH-EKKVLEMIGRKLKKNS----VALDIVNFGEDDEG----------------NTEKLEALLAAVNN-NDSS 96 (332)
Q Consensus 39 IvFVGSPi~~-dek~L~klaKkLKKnn----VavDII~FGe~~~~----------------n~~kL~~fi~~vN~-~~~S 96 (332)
|+|++-|... +...+..|.+-|++.+ +.+ +|.+|.-.+. ....+..+...+.+ ..++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~-lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDV-LILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPST 79 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECE-EEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCS
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcE-EEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhccccc
Confidence 6888888876 6677888888887655 444 7788874421 01222233333322 2578
Q ss_pred eEEEeCC
Q 020031 97 HLVHVPP 103 (332)
Q Consensus 97 hlv~VP~ 103 (332)
|++.||.
T Consensus 80 ~vvlvPg 86 (209)
T PF04042_consen 80 QVVLVPG 86 (209)
T ss_dssp EEEEE--
T ss_pred EEEEeCC
Confidence 9999985
No 336
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.28 E-value=4.6e+02 Score=30.03 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccce
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVa 66 (332)
-+|..|+.=|.++...+..+ +-++++.|+ ..++..|..++|+|.+.++.
T Consensus 917 ~~~~~a~~k~~~~~~~~~p~--~~~~lisv~---~~dK~~l~~~a~~l~~~G~~ 965 (1066)
T PRK05294 917 RTFGEAFAKAQLAAGNRLPT--SGTVFLSVR---DRDKEEVVELAKRLLELGFK 965 (1066)
T ss_pred CCHHHHHHHHHHhcccccCC--CCeEEEEec---cccHHHHHHHHHHHHHcCCE
Confidence 46888999999998666543 345666665 45788899998886665433
No 337
>PRK11622 hypothetical protein; Provisional
Probab=22.16 E-value=6.6e+02 Score=24.85 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhcCCcc------------ccceEEEEe--cCCCcccHHHHHHHHHHhhh-ccceeeEEEecCCCCCcHH
Q 020031 17 AGIQVAQLALKHRQNKK------------QQQRIIVFV--GSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGEDDEGNTE 81 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~------------~~qRIIvFV--GSPi~~dek~L~klaKkLKK-nnVavDII~FGe~~~~n~~ 81 (332)
-...++.|+|.-..++. ..+-|+++. |++- ...-+..+.+.++| .+|.|.++.+|.. .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~tv~~~~wgg~~~--~~~~~~~~~~~f~~~~gI~V~~~~~~~~----~~ 81 (401)
T PRK11622 8 LLGLLSLLSLAACASDAENKDWQQILEEAKGQTVYFYAWGGSPA--INRYLDWVAKELKERYGITLKHVKLADI----AE 81 (401)
T ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHhcCCEEEEEEeCCcHH--HHHHHHHHHHHHHHHHCcEEEEEecCCH----HH
Confidence 34456677776666554 233344443 4541 12234456676665 5898888877533 46
Q ss_pred HHHHHHHHHhcC----CCceEEEeC
Q 020031 82 KLEALLAAVNNN----DSSHLVHVP 102 (332)
Q Consensus 82 kL~~fi~~vN~~----~~Shlv~VP 102 (332)
.+.+++..+.++ ...++|.+.
T Consensus 82 ~~~kl~ae~~aG~~~~~~~Dvv~~~ 106 (401)
T PRK11622 82 AVNRLLAEKQAGRDTGGSVDLVWIN 106 (401)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEEC
Confidence 677777776554 457888774
No 338
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=22.01 E-value=3.2e+02 Score=23.72 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=30.3
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhcc----ceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNS----VALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnn----VavDII~FGe~~ 76 (332)
++-.|+-+|+|+.-|+--=..++++|++++ -.|.||.-|...
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~ 48 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGA 48 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcH
Confidence 455788899999988877788888887532 136777766544
No 339
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=21.99 E-value=1.2e+02 Score=28.76 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=30.7
Q ss_pred ceEEEEecCCCccc-HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHH----HHHHHhcCCCce
Q 020031 36 QRIIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA----LLAAVNNNDSSH 97 (332)
Q Consensus 36 qRIIvFVGSPi~~d-ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~----fi~~vN~~~~Sh 97 (332)
++.|- |++|+-.- .--++++-+.||+. ..+=||-+=-...+-.++|.. -+-.|+.+..||
T Consensus 13 ~~~i~-v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH 77 (202)
T COG0378 13 MLRIG-VGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCH 77 (202)
T ss_pred eEEEE-ecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccC
Confidence 44444 55555543 44457888888776 555555442222122344443 233455555665
No 340
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=21.98 E-value=5.2e+02 Score=22.28 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=39.7
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
++-.+++||..-......-|++.+.- .+.+++ .-+-....+...+..|++.+......+++.|==+|
T Consensus 44 ~~d~i~sSp~~Ra~qTa~~l~~~~~~-~~~~~~-~~~l~p~~~~~~~~~~l~~~~~~~~~~vliVgH~P 110 (152)
T TIGR00249 44 EIERILVSPFVRAEQTAEIVGDCLNL-PSSAEV-LEGLTPCGDIGLVSDYLEALTNEGVASVLLVSHLP 110 (152)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCC-CcceEE-ccCcCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 34567899999888888888887742 222322 11222124456677888887643444566664444
No 341
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=21.81 E-value=4.7e+02 Score=24.99 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=43.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHH
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 111 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~ 111 (332)
+|++++.+.-+.. .-..++-..|++. +.+.++.+-..+ .+.+-+...++.+.......+|-|=-|. ..|+
T Consensus 24 ~~~liv~~~~~~~--~~~~~v~~~l~~~-~~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~d~IIaiGGGs--~~D~ 93 (332)
T cd07766 24 DRALVVSDEGVVK--GVGEKVADSLKKL-IAVHIFDGVGPN-PTFEEVKEAVERARAAEVDAVIAVGGGS--TLDT 93 (332)
T ss_pred CeEEEEeCCchhh--hHHHHHHHHHHhc-CcEEEeCCcCCC-cCHHHHHHHHHHHHhcCcCEEEEeCCch--HHHH
Confidence 4777766654433 5667788888887 665554443333 5566677777777665556666665553 4554
No 342
>PRK08263 short chain dehydrogenase; Provisional
Probab=21.78 E-value=1.8e+02 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS 44 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS 44 (332)
+|+...+.+.+.++++.... ..+-||||+|
T Consensus 107 ~n~~~~~~l~~~~~~~~~~~--~~~~iv~vsS 136 (275)
T PRK08263 107 TNFFGALWVTQAVLPYLREQ--RSGHIIQISS 136 (275)
T ss_pred HhhHHHHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 45555666667665543211 2234677777
No 343
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.77 E-value=2.9e+02 Score=24.83 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-----------cHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-----------EKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-----------dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+++.++++-..+ ...-|||++|.... .+--+ ..|++.|+..+|.|-.|..|-..
T Consensus 126 ~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~ 202 (256)
T PRK12859 126 VNVRATTLLSSQFARGFDKK--SGGRIINMTSGQFQGPMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTD 202 (256)
T ss_pred HHhHHHHHHHHHHHHHHhhc--CCeEEEEEcccccCCCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEcccc
Confidence 56777778877777654322 23567777775431 22222 34566667778888888888755
No 344
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=21.75 E-value=4.8e+02 Score=21.87 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHH
Q 020031 18 GIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 86 (332)
Q Consensus 18 gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~f 86 (332)
|-.+++..|+.. -+|++|+=+|-. -|-.+...+.+.|+ ++.+=|.++|... ....-...|
T Consensus 11 G~~l~~~L~~~~------~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~-~~~~~~~~~ 81 (183)
T PF13460_consen 11 GRALAKQLLRRG------HEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPP-KDVDAAKNI 81 (183)
T ss_dssp HHHHHHHHHHTT------SEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTT-THHHHHHHH
T ss_pred HHHHHHHHHHCC------CEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhc-ccccccccc
Confidence 445555555544 356666655543 12233466666777 3444444556544 336777788
Q ss_pred HHHHhcCCCceEEEe
Q 020031 87 LAAVNNNDSSHLVHV 101 (332)
Q Consensus 87 i~~vN~~~~Shlv~V 101 (332)
++++...+-.|+|.+
T Consensus 82 ~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 82 IEAAKKAGVKRVVYL 96 (183)
T ss_dssp HHHHHHTTSSEEEEE
T ss_pred cccccccccccceee
Confidence 888876555677654
No 345
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=21.59 E-value=48 Score=27.79 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=30.4
Q ss_pred HHHhhhcCCccccceE--EEEecCCCcc-----------------cHHHHHHHHHHhhhccceeeE
Q 020031 23 QLALKHRQNKKQQQRI--IVFVGSPIKH-----------------EKKVLEMIGRKLKKNSVALDI 69 (332)
Q Consensus 23 ~LALKHRqnK~~~qRI--IvFVGSPi~~-----------------dek~L~klaKkLKKnnVavDI 69 (332)
++-+|.|. ++-|+ =||+||-..+ +..+.++|+++|-+++|--+|
T Consensus 11 ~v~ikdRr---~~lk~y~~CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gvi~~V 73 (95)
T cd04446 11 QVEVKKRR---HNLKSYHDCFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRVFEAV 73 (95)
T ss_pred cCccccee---eeceecccccchHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCCeeec
Confidence 44445443 33444 3888886543 678889999999999988877
No 346
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=21.57 E-value=1.2e+02 Score=31.19 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=36.8
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhcc--ceeeEEEecCCCCCcHHHHHH--HHHHHh
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEA--LLAAVN 91 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnn--VavDII~FGe~~~~n~~kL~~--fi~~vN 91 (332)
..-=+||+|.|.. +-.||.+|++.|++.+ +.++++.|=... ..+.+.. +++.+-
T Consensus 288 ~~~D~V~lGcPH~-S~~El~~ia~ll~gr~~~~~~~~~i~t~~~--v~~~a~~~G~~~~le 345 (400)
T PF04412_consen 288 EKVDLVALGCPHL-SLEELREIAELLEGRKVHPNVPLWITTSRA--VYELAERMGYVERLE 345 (400)
T ss_pred CCCCEEEECCCCC-CHHHHHHHHHHHhCCCCCCCceEEEECCHH--HHHHHHhCCHHHHHH
Confidence 4455889999964 5566888999998888 788888885433 2344444 555553
No 347
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.53 E-value=3.6e+02 Score=20.23 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhcCCccccceEEEEecCCCc---ccHHHHHHHHHHhhhccceee
Q 020031 16 AAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---HEKKVLEMIGRKLKKNSVALD 68 (332)
Q Consensus 16 ~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~---~dek~L~klaKkLKKnnVavD 68 (332)
..|+.+|....+ ...++.++.-+|-. .+++-...+-++|++.||.|-
T Consensus 9 ~ig~E~A~~l~~------~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 9 FIGIELAEALAE------LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHHH------TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHH------hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 357777776532 22577777777765 367777888899999988764
No 348
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=21.44 E-value=1.6e+02 Score=25.70 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred eEEEEecCC-CcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSP-IKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSP-i~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
||++|+.+. ..-....+..|++.|.+.+..|.|+.+....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 566666554 2345677888999998999999998876543
No 349
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=21.29 E-value=1.9e+02 Score=22.91 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.3
Q ss_pred eEEEEecCCCc-ccHHHHHH-HHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIK-HEKKVLEM-IGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~-~dek~L~k-laKkLKKnnVavDII~FGe~~ 76 (332)
++|+++|+.-. .+-+.|++ +.++|++..-.+.++.+|...
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~ 44 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP 44 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH
Confidence 45666766654 35566777 888888877778888888754
No 350
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.28 E-value=1.7e+02 Score=24.46 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=34.2
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhc--cceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKn--nVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
|+|+|+=|..--.-...+...|.+. +..++|+|.|-....-...+..+...+-. ..-.+|+|--|.
T Consensus 4 v~~~GDSit~g~~~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~-~~~d~v~l~~G~ 71 (191)
T cd01834 4 IVFIGNSITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLP-AKPDVVSIMFGI 71 (191)
T ss_pred EEEeCCChhhccccHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhccccc-CCCCEEEEEeec
Confidence 5677877765322223344455543 36799999998773333333344433321 223455554443
No 351
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.23 E-value=4.7e+02 Score=23.28 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeE
Q 020031 15 LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDI 69 (332)
Q Consensus 15 ~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDI 69 (332)
+..|-.++...+++ ..+.||++|.|++-.. ....+.-+-+.|+..++.+.+
T Consensus 109 ~~~g~~~~~~l~~~----~g~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~~ 160 (271)
T cd06312 109 YAAGEAAGERLAEL----KGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITEEV 160 (271)
T ss_pred HHHHHHHHHHHHHh----cCCCeEEEEecCCCCccHHHHHHHHHHHHHhcCceeeE
Confidence 34444455555553 1234565555544322 233344444555555554433
No 352
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=21.09 E-value=3.9e+02 Score=21.49 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=36.8
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhc-c-ceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeC
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKN-S-VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP 102 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKn-n-VavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP 102 (332)
|+=-||+-......+..++.+|++. . ..|. +.|=+.. .+.+..-++.+-..+-.+++.+|
T Consensus 5 lv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~-~afle~~---~P~~~~~l~~l~~~g~~~i~vvP 66 (117)
T cd03414 5 LVGRGSSDPDANADVAKIARLLEEGTGFARVE-TAFAAAT---RPSLPEALERLRALGARRVVVLP 66 (117)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEE-EEEecCC---CCCHHHHHHHHHHcCCCEEEEEe
Confidence 3445788777778999999999764 2 3343 2443322 12344445554445667888887
No 353
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=21.09 E-value=2.2e+02 Score=28.05 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=48.5
Q ss_pred ceEEEEecCCC-cccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhH-Hhh
Q 020031 36 QRIIVFVGSPI-KHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSD-VLL 113 (332)
Q Consensus 36 qRIIvFVGSPi-~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD-~l~ 113 (332)
++|=+.||+=- .-..+-+.+|-|+|+++|...=+|.+|+.. .+||..| . + |--=++.||..+ |-| .-+
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in---~~kL~nf-~-i---D~fV~~aCPr~s--idd~~~f 282 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNIS---PDQLRNL-D-F---DAYVNTACPRIA--IDDYARF 282 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCC---HHHHhcC-C-c---CEEEEccCCCcc--cccHhhC
Confidence 44555566543 356777888999999999999999999766 7999877 3 4 333344445433 222 234
Q ss_pred hcCccc
Q 020031 114 STPIFT 119 (332)
Q Consensus 114 sSpI~~ 119 (332)
..||++
T Consensus 283 ~kPvlT 288 (308)
T TIGR03682 283 KKPVLT 288 (308)
T ss_pred CCcccC
Confidence 566665
No 354
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=21.09 E-value=1.1e+03 Score=26.30 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHH----hcHHHHHHHHHHHH
Q 020031 147 VDPNLDPELALALR----VSMEEERARQEAAA 174 (332)
Q Consensus 147 vDP~~DPELAmALR----~SmEEEr~RQe~~~ 174 (332)
|+|..-.+||-||. |+.+|.++|-++..
T Consensus 425 VnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~ 456 (797)
T PLN03063 425 VNPWNITEVSSAIKEALNMSDEERETRHRHNF 456 (797)
T ss_pred ECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 78886667877664 45555555544433
No 355
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=21.06 E-value=6e+02 Score=24.95 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=51.1
Q ss_pred CccccHHHHHHHHHHHhhhcCCccccceEEEEecC--CCcccHHHHHHHHHHhhhccc-eeeEEEecCCCCCcHHHHHHH
Q 020031 10 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS--PIKHEKKVLEMIGRKLKKNSV-ALDIVNFGEDDEGNTEKLEAL 86 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS--Pi~~dek~L~klaKkLKKnnV-avDII~FGe~~~~n~~kL~~f 86 (332)
.|..........|++--+... ...+-.++|-.. |.+=-+-.+...-++|.+.++ .|.||..|=.. ++.|.|...
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~--~~~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~gFv~-D~lETl~ei 281 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLG--FPNEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPIGFTA-DHLETLYEI 281 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECCcccc-cchhHHHhh
Confidence 477666655566665555443 224566777553 322112223333344555565 78889998888 787877432
Q ss_pred H----HHHhcCCCceEEEeCC
Q 020031 87 L----AAVNNNDSSHLVHVPP 103 (332)
Q Consensus 87 i----~~vN~~~~Shlv~VP~ 103 (332)
= +.....+..+|..||.
T Consensus 282 ~~e~~~~~~~~G~~~~~~vp~ 302 (322)
T TIGR00109 282 DEEYREVAEDAGGDKYQRCPA 302 (322)
T ss_pred hHHHHHHHHHcCCCeEEECCC
Confidence 1 2233335567877775
No 356
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=65 Score=33.00 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCCcccccCccccHHHHHHHHHHHhhhcC--CccccceEEE------------EecCCCc--ccHHHHHHHHHHhhhccc
Q 020031 2 LLDAGLEIGGELNLAAGIQVAQLALKHRQ--NKKQQQRIIV------------FVGSPIK--HEKKVLEMIGRKLKKNSV 65 (332)
Q Consensus 2 ~~lH~i~i~G~~~~~~gIqiA~LALKHRq--nK~~~qRIIv------------FVGSPi~--~dek~L~klaKkLKKnnV 65 (332)
.+||-|.+.|.=.|..|=++..+ +|-+ +-...+|||+ |+|-|+. .+.-.|..+|+-|.|.==
T Consensus 173 ~~lq~I~~dG~Krf~~Ggr~kg~--f~p~~g~~~~aa~lvi~EGyATal~i~~~~ga~v~aAi~agNll~VA~al~~~~P 250 (366)
T COG4643 173 TGLQLIQPDGTKRFLKGGRVKGC--FIPLGGLAGPAARLVIAEGYATALSISQATGAPVAAAIDAGNLLAVASALRKKFP 250 (366)
T ss_pred eeeEEEcCCccceeccCCcccce--eeecCCCcccccceEEeechhHHHHHHHHhhhhHHhhhhcccHHHHHHHHHHhCC
Confidence 46888999998888888776543 2222 2344666665 4666765 366679999999999888
Q ss_pred eeeEEEecCCCC---CcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 66 ALDIVNFGEDDE---GNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 66 avDII~FGe~~~---~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
..-||.|++.+. +|+-+..+ -++.+ -.--++++||-
T Consensus 251 da~iIIaAD~D~~~~nnpG~t~A-~eaA~--Avng~~~lP~~ 289 (366)
T COG4643 251 DAQIIIAADDDINTANNPGLTKA-EEAAQ--AVNGTVALPPF 289 (366)
T ss_pred CcceEEEeccccccCCCcchHHH-HHHHH--hhCceeecCCC
Confidence 899999999885 34333333 23222 11236777773
No 357
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=20.82 E-value=1e+02 Score=27.45 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=27.8
Q ss_pred EEEecCCCc----ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 39 IVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 39 IvFVGSPi~----~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|+||++... -...-...|++.|++.++.|+||++....
T Consensus 2 Il~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 2 ILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred EEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 455655443 25666788999999999999999886544
No 358
>PTZ00110 helicase; Provisional
Probab=20.81 E-value=2.1e+02 Score=29.96 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=33.4
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC-CcHHHHHHHHH
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE-GNTEKLEALLA 88 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~-~n~~kL~~fi~ 88 (332)
...|+||||-+ .+....|++.|+..++.+..| .|.... +-...|+.|-+
T Consensus 376 ~~~k~LIF~~t-----~~~a~~l~~~L~~~g~~~~~i-hg~~~~~eR~~il~~F~~ 425 (545)
T PTZ00110 376 DGDKILIFVET-----KKGADFLTKELRLDGWPALCI-HGDKKQEERTWVLNEFKT 425 (545)
T ss_pred cCCeEEEEecC-----hHHHHHHHHHHHHcCCcEEEE-ECCCcHHHHHHHHHHHhc
Confidence 45799999954 677889999999998877544 455431 22345666643
No 359
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.78 E-value=3.6e+02 Score=24.82 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=35.7
Q ss_pred ceEEEEecCCCc---ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGSPIK---HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGSPi~---~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
.-|+++.||--. -..+...+|+++|++++ +-||.+|... ..+..+.+.+..
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~--~~ivl~g~~~--e~~~~~~i~~~~ 175 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARG--ARVVLTGGPA--ERELAEEIAAAL 175 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCC--CEEEEEechh--hHHHHHHHHHhc
Confidence 347777777532 36788999999999984 5567777654 356667776655
No 360
>PRK00889 adenylylsulfate kinase; Provisional
Probab=20.76 E-value=2e+02 Score=24.69 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=26.5
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEE
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII 70 (332)
|+-.||+|+|.|=.--.--...|++.|+..+..+-+|
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5566999999987655555677888887777555444
No 361
>PRK12827 short chain dehydrogenase; Provisional
Probab=20.73 E-value=2.8e+02 Score=24.15 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-----------cHHH----HHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-----------EKKV----LEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-----------dek~----L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.++...+.++++++++-..+... +-|+||+|.... .+.. ...+++.+.+.+|.+-+|..|-..
T Consensus 117 ~n~~~~~~l~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~ 194 (249)
T PRK12827 117 VNLDGFFNVTQAALPPMIRARRG-GRIVNIASVAGVRGNRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAIN 194 (249)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCC-eEEEEECCchhcCCCCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcC
Confidence 45566777788877432222222 347777885321 2222 245556667779999999999875
No 362
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=20.71 E-value=4.9e+02 Score=25.29 Aligned_cols=72 Identities=10% Similarity=0.218 Sum_probs=43.9
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC-CCcHHHHHHHHHHHhcCC---CceEEEeCCCCchhhHH
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD-EGNTEKLEALLAAVNNND---SSHLVHVPPGPNALSDV 111 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~-~~n~~kL~~fi~~vN~~~---~Shlv~VP~G~~~LsD~ 111 (332)
+|++++.+.-+. . .-..++-+.|++.++.+.++.|.... ..+.+-++..++.+.... ...+|-|=-|. ..|+
T Consensus 21 ~~~livtd~~~~-~-~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGs--v~D~ 96 (344)
T TIGR01357 21 SKLVIITDETVA-D-LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGV--VGDL 96 (344)
T ss_pred CeEEEEECCchH-H-HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChH--HHHH
Confidence 577777665553 2 35677888899999988876775432 145566666666664332 24555554443 4554
No 363
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=20.69 E-value=75 Score=21.58 Aligned_cols=22 Identities=9% Similarity=0.389 Sum_probs=15.5
Q ss_pred hhhccCHHHHHHHHhcCCCCCCCChHHHH
Q 020031 276 SQLLADQAFVSSILASLPGVDPEDPSVKD 304 (332)
Q Consensus 276 ~~~~~D~~fl~svL~~LPGVDpnd~~i~~ 304 (332)
.++++||.|++.++.+ ||.+++
T Consensus 18 ~~~~~nP~~~~~~~~~-------nP~~~~ 39 (41)
T smart00727 18 QDMQQNPDMLAQMLQE-------NPQLLQ 39 (41)
T ss_pred HHHHHCHHHHHHHHHh-------CHHhHh
Confidence 3455689999988876 566554
No 364
>PRK08264 short chain dehydrogenase; Validated
Probab=20.68 E-value=5.7e+02 Score=22.29 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHH----HHHHHHHhhhccceeeEEEecCCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKV----LEMIGRKLKKNSVALDIVNFGEDDE 77 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~----L~klaKkLKKnnVavDII~FGe~~~ 77 (332)
+++...+.+++.++++..... . ..|+|++|... ..+.- ...+++.|++.+|.+-+|.-|-...
T Consensus 104 ~n~~~~~~l~~~~~~~~~~~~-~-~~~v~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t 181 (238)
T PRK08264 104 TNYFGPLAMARAFAPVLAANG-G-GAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDT 181 (238)
T ss_pred HHhHHHHHHHHHHHHHHHhcC-C-CEEEEEcChhhccCCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccc
Confidence 455666777777776543322 2 34666666432 12222 3455666677799998888885521
Q ss_pred -----------CcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHhhhc
Q 020031 78 -----------GNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLST 115 (332)
Q Consensus 78 -----------~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~sS 115 (332)
...+.-..++..+. .+.+.++++.--+.+.-.+...
T Consensus 182 ~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~ 228 (238)
T PRK08264 182 DMAAGLDAPKASPADVARQILDALE--AGDEEVLPDEMARQVKAALSAD 228 (238)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHh--CCCCeEeccHHHHHHHHHhhcC
Confidence 22345666777775 3455666664333444444333
No 365
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=20.63 E-value=7.6e+02 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=30.5
Q ss_pred cceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecC
Q 020031 35 QQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 35 ~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe 74 (332)
...+|+|||.-+.. .-..|++..++|++.+-.+-+|.+|.
T Consensus 210 ~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~ 251 (396)
T cd03818 210 GDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGG 251 (396)
T ss_pred CCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 45689999964442 45678888888888777788888886
No 366
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.53 E-value=5.8e+02 Score=27.21 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=55.8
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC-CcHHHHHH
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE-GNTEKLEA 85 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~-~n~~kL~~ 85 (332)
+.|.-.++=+..++.+.=+.|..- .+-|--|+|-+||. .+-+.+++++|+|.+-+ +|+|+|.+... -+......
T Consensus 114 ~RIfd~lndv~nl~~ai~~vk~ag--~~~~~~i~yt~sp~-~t~e~~~~~a~~l~~~G--ad~I~IkDtaGll~P~~~~~ 188 (499)
T PRK12330 114 FRVFDALNDPRNLEHAMKAVKKVG--KHAQGTICYTVSPI-HTVEGFVEQAKRLLDMG--ADSICIKDMAALLKPQPAYD 188 (499)
T ss_pred EEEEecCChHHHHHHHHHHHHHhC--CeEEEEEEEecCCC-CCHHHHHHHHHHHHHcC--CCEEEeCCCccCCCHHHHHH
Confidence 344433444455555555555433 24667889999995 58888999999999887 58999988542 35777788
Q ss_pred HHHHHhc
Q 020031 86 LLAAVNN 92 (332)
Q Consensus 86 fi~~vN~ 92 (332)
+|.++..
T Consensus 189 LV~~Lk~ 195 (499)
T PRK12330 189 IVKGIKE 195 (499)
T ss_pred HHHHHHH
Confidence 8888754
No 367
>PTZ00056 glutathione peroxidase; Provisional
Probab=20.35 E-value=2.2e+02 Score=25.84 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=37.3
Q ss_pred ceEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEE---ecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVN---FGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~---FGe~~~~n~~kL~~fi~~v 90 (332)
--+|.|.+| |....-..|.+|.++++..+|.|=-|+ ||....++.+.+.+|+..-
T Consensus 41 vvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~ 101 (199)
T PTZ00056 41 VLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKN 101 (199)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHc
Confidence 456677765 334466789999999998887654444 2333335678999999764
No 368
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=20.29 E-value=2.9e+02 Score=25.35 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=48.8
Q ss_pred ccCccccHHHHHHHHH------HHhhhcCCccccc-eEEEEe---cCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 8 EIGGELNLAAGIQVAQ------LALKHRQNKKQQQ-RIIVFV---GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~------LALKHRqnK~~~q-RIIvFV---GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..+|.+|+-..|+-+. +-|+||+.+..+. |||+.| || ...-..-+..+.--|.+..-.|.+++|+...
T Consensus 23 ~~~~~lD~rrTir~~~r~~g~~~~l~~r~~r~~~~~~lvvl~DvSGS-M~~~s~~~l~~~~~l~~~~~~~~~f~F~~~l 100 (222)
T PF05762_consen 23 RRRGRLDLRRTIRASLRTGGEPLRLVRRRRRPRKPRRLVVLCDVSGS-MAGYSEFMLAFLYALQRQFRRVRVFVFSTRL 100 (222)
T ss_pred CCCCCCCHHHHHHHHHhcCCCcceeeccccccCCCccEEEEEeCCCC-hHHHHHHHHHHHHHHHHhCCCEEEEEEeeeh
Confidence 5678899988887664 5688888666666 777665 23 2222455667777788887799999999765
No 369
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.26 E-value=2e+02 Score=23.44 Aligned_cols=38 Identities=8% Similarity=0.195 Sum_probs=29.6
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
.||+++-|+=+.. .=-+.|+-+-++|+|+.++|..++.
T Consensus 4 ~~ILl~C~~G~sS-S~l~~k~~~~~~~~gi~~~v~a~~~ 41 (95)
T TIGR00853 4 TNILLLCAAGMST-SLLVNKMNKAAEEYGVPVKIAAGSY 41 (95)
T ss_pred cEEEEECCCchhH-HHHHHHHHHHHHHCCCcEEEEEecH
Confidence 5788888888763 3456788888899999999888764
No 370
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.24 E-value=1.6e+02 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.378 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
..-|+++|. |.. ++++.+++||+|...+|.+=.|+
T Consensus 81 ~~DRVllfs--~~~-~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFS--PFS-TDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEE--S-S---HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEe--CCC-CCHHHHHHHHHHHHCCCCEEEEE
Confidence 345776664 433 55679999999999999988888
No 371
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=20.19 E-value=4.6e+02 Score=25.92 Aligned_cols=48 Identities=8% Similarity=0.227 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 49 EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 49 dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
..+...+++++|++++|.|++- +. . .+..+ =+...+...-.++|.|-+
T Consensus 330 ~~~~a~~i~~~Lr~~Gi~v~i~-~~--~-~~~~~---~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 330 AELAALKLAEKLRAAGIRVELD-YG--G-RKLKK---QFKYADKSGARFVLILGE 377 (412)
T ss_pred HHHHHHHHHHHHHHCCCeEEEe-CC--C-CCHHH---HHHHHHHcCCCEEEEECh
Confidence 3456899999999999999873 32 1 23333 333334445567777755
No 372
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.16 E-value=5.2e+02 Score=24.67 Aligned_cols=87 Identities=20% Similarity=0.322 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe--cCCCCCcHHHHHHHHHHHhc
Q 020031 15 LAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF--GEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 15 ~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F--Ge~~~~n~~kL~~fi~~vN~ 92 (332)
-++|..+..--|++-..+. . =|.|+|+ ++..+.+++++|++.= .++|+-+ |--. .+--++.++.+|
T Consensus 87 Rv~G~dl~~~ll~~~~~~~--~-~v~llG~----~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~---~~e~~~i~~~I~- 154 (243)
T PRK03692 87 RVAGADLWEALMARAGKEG--T-PVFLVGG----KPEVLAQTEAKLRTQW-NVNIVGSQDGYFT---PEQRQALFERIH- 154 (243)
T ss_pred eeChHHHHHHHHHHHHhcC--C-eEEEECC----CHHHHHHHHHHHHHHh-CCEEEEEeCCCCC---HHHHHHHHHHHH-
Confidence 3445555555555543222 3 3577786 4778899999998864 6776643 3332 333456888887
Q ss_pred CCCceEEEeCCCCchhhHHhhh
Q 020031 93 NDSSHLVHVPPGPNALSDVLLS 114 (332)
Q Consensus 93 ~~~Shlv~VP~G~~~LsD~l~s 114 (332)
..+.+||.|-=|. ..-+..+.
T Consensus 155 ~s~~dil~VglG~-PkQE~~~~ 175 (243)
T PRK03692 155 ASGAKIVTVAMGS-PKQEIFMR 175 (243)
T ss_pred hcCCCEEEEECCC-cHHHHHHH
Confidence 3558899887772 13555543
No 373
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.14 E-value=2.8e+02 Score=24.58 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
.++...+.+++.++++-... ..+.|+|++|... ..+..+ ..+++.+...+|.|-.|..|-..
T Consensus 118 ~n~~~~~~~~~~~~~~~~~~--~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~ 194 (256)
T PRK06124 118 TDLVAPILLSRLAAQRMKRQ--GYGRIIAITSIAGQVARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFA 194 (256)
T ss_pred HHhHHHHHHHHHHHHHHHhc--CCcEEEEEeechhccCCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCcc
Confidence 45566677888777754322 2345788877432 122222 34566666678999999988765
No 374
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.14 E-value=8.5e+02 Score=24.07 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=52.2
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEe--CCCCchhhHHhhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV--PPGPNALSDVLLS 114 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~V--P~G~~~LsD~l~s 114 (332)
++.+..-..-..+.-=.....|.+++-+|.+.++.|-+.. ..+.|.+.|+.+|..++-|=+.| |--+++-.+.++.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~ 112 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETT--SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLE 112 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC--CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 4444333333345555567788899999999999997665 45678888999998877664444 5444555666665
Q ss_pred c
Q 020031 115 T 115 (332)
Q Consensus 115 S 115 (332)
.
T Consensus 113 ~ 113 (285)
T PRK10792 113 R 113 (285)
T ss_pred c
Confidence 5
No 375
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.10 E-value=1.3e+02 Score=27.82 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=25.8
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
||.++...+..-.+..+..|++.|.+.+..|.||+++
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~ 38 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSS 38 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecC
Confidence 4444443344456777888888888888888888775
No 376
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=20.02 E-value=1.2e+02 Score=27.51 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=25.9
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
+||++.|+.=+..-+ ...+.+.|+|.+..|.||.
T Consensus 2 k~Ill~vtGsiaa~~--~~~li~~L~~~g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSIAAYK--AADLTSQLTKRGYQVTVLM 35 (182)
T ss_pred CEEEEEEeChHHHHH--HHHHHHHHHHCCCEEEEEE
Confidence 578888877665433 6788888899898888776
Done!