Query 020031
Match_columns 332
No_of_seqs 156 out of 221
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_W RPN10, 26S proteasome r 100.0 6.4E-60 2.2E-64 442.0 11.5 179 2-181 74-254 (268)
2 1yx4_A 26S proteasome non-ATPa 99.9 3.4E-28 1.2E-32 207.7 8.5 102 137-266 24-125 (132)
3 2x5n_A SPRPN10, 26S proteasome 99.9 1.3E-25 4.3E-30 198.3 13.2 116 3-120 74-189 (192)
4 1jey_B KU80; double-strand DNA 98.2 9.5E-07 3.2E-11 88.9 5.9 70 4-75 94-170 (565)
5 2klz_A Ataxin-3; UIM, ubiquiti 97.5 1.9E-05 6.5E-10 57.7 0.6 39 219-267 5-43 (52)
6 1p9c_A 26S proteasome non-ATPa 97.1 0.00012 3.9E-09 52.4 1.1 21 246-266 17-37 (45)
7 1jey_A KU70; double-strand DNA 96.5 0.0054 1.9E-07 62.5 7.8 66 11-76 139-209 (609)
8 4hqf_A Thrombospondin-related 96.4 0.013 4.3E-07 52.8 8.9 96 8-105 101-196 (281)
9 1shu_X Anthrax toxin receptor 96.4 0.029 9.8E-07 46.0 10.3 97 7-112 76-174 (182)
10 4hqo_A Sporozoite surface prot 96.2 0.021 7.2E-07 51.3 9.2 100 8-110 98-197 (266)
11 3ibs_A Conserved hypothetical 95.9 0.041 1.4E-06 46.5 9.4 90 9-106 88-200 (218)
12 1atz_A VON willebrand factor; 94.9 0.098 3.3E-06 43.7 8.2 88 9-104 80-170 (189)
13 2xgg_A Microneme protein 2; A/ 94.7 0.063 2.2E-06 44.8 6.5 68 9-76 94-163 (178)
14 1n3y_A Integrin alpha-X; alpha 94.5 0.046 1.6E-06 45.5 5.3 93 9-104 82-179 (198)
15 1ijb_A VON willebrand factor; 94.5 0.18 6.2E-06 42.9 9.0 99 6-110 84-186 (202)
16 2b2x_A Integrin alpha-1; compu 93.7 0.22 7.5E-06 42.8 8.0 96 10-105 96-198 (223)
17 2nut_A Protein transport prote 93.5 0.18 6.1E-06 53.1 8.4 98 10-113 263-391 (769)
18 1pcx_A Protein transport prote 92.9 0.2 6.9E-06 53.0 7.8 73 10-88 303-401 (810)
19 1m2v_B SEC24, protein transpor 92.9 0.21 7.3E-06 53.8 8.1 72 11-88 420-517 (926)
20 1mf7_A Integrin alpha M; cell 92.7 0.15 5E-06 42.7 5.3 97 5-104 73-175 (194)
21 1q0v_A Hydrophilic protein; ha 92.4 0.11 3.9E-06 41.2 3.9 21 146-166 6-26 (81)
22 1q0p_A Complement factor B; VO 92.4 1.1 3.9E-05 37.5 10.4 90 9-104 96-205 (223)
23 1pt6_A Integrin alpha-1; cell 92.3 0.21 7.2E-06 42.5 5.8 101 10-111 81-188 (213)
24 1m2o_A SEC23, protein transpor 92.3 0.54 1.8E-05 49.4 10.0 78 11-90 258-365 (768)
25 1q0v_A Hydrophilic protein; ha 92.3 0.086 2.9E-06 41.9 3.1 49 218-266 9-70 (81)
26 3eh2_A Protein transport prote 92.1 0.26 8.8E-06 51.9 7.4 72 13-88 289-386 (766)
27 1yx4_A 26S proteasome non-ATPa 92.0 0.15 5E-06 43.8 4.4 90 138-235 29-124 (132)
28 3n2n_F Anthrax toxin receptor 91.7 0.58 2E-05 38.2 7.6 87 8-103 78-168 (185)
29 3qhp_A Type 1 capsular polysac 91.6 2.7 9.2E-05 33.2 11.3 67 95-171 74-146 (166)
30 3efo_B SEC24 related gene fami 91.5 0.32 1.1E-05 51.2 7.2 72 13-88 293-390 (770)
31 3eh1_A Protein transport prote 90.3 0.48 1.6E-05 49.9 7.2 59 13-76 271-354 (751)
32 3a1q_C Ubiquitin interaction m 88.3 0.44 1.5E-05 33.7 3.5 16 150-165 5-20 (45)
33 1v7p_C Integrin alpha-2; snake 88.2 2.3 8E-05 35.6 8.7 105 6-111 75-187 (200)
34 2rr9_C Putative uncharacterize 86.9 0.7 2.4E-05 32.9 3.9 15 219-233 27-41 (46)
35 2rr9_C Putative uncharacterize 86.1 0.22 7.6E-06 35.4 1.0 18 248-265 1-18 (46)
36 3a1q_C Ubiquitin interaction m 84.9 0.21 7.3E-06 35.4 0.4 19 247-265 3-21 (45)
37 2x31_A Magnesium-chelatase 60 84.2 0.026 9E-07 46.9 -5.4 71 4-75 71-152 (189)
38 3hly_A Flavodoxin-like domain; 83.5 2.3 7.9E-05 35.3 6.3 41 36-76 1-41 (161)
39 4fx5_A VON willebrand factor t 83.4 7.7 0.00026 38.1 10.9 80 4-89 151-232 (464)
40 3fni_A Putative diflavin flavo 83.3 3.6 0.00012 34.2 7.4 42 34-75 3-44 (159)
41 2jjm_A Glycosyl transferase, g 83.3 12 0.00039 33.8 11.3 131 34-170 209-355 (394)
42 2klz_A Ataxin-3; UIM, ubiquiti 82.9 0.5 1.7E-05 34.5 1.7 19 218-236 24-42 (52)
43 2gek_A Phosphatidylinositol ma 82.9 10 0.00035 33.8 10.7 52 36-90 208-261 (406)
44 2x6q_A Trehalose-synthase TRET 81.7 8.6 0.00029 34.9 9.8 86 33-118 228-319 (416)
45 1f4p_A Flavodoxin; electron tr 80.2 2 7E-05 34.2 4.6 41 36-76 1-41 (147)
46 2bfw_A GLGA glycogen synthase; 79.9 7.5 0.00026 31.4 8.0 54 37-90 37-94 (200)
47 2a5l_A Trp repressor binding p 79.5 2.3 7.9E-05 35.3 4.9 40 36-75 6-45 (200)
48 3okp_A GDP-mannose-dependent a 79.3 12 0.00042 33.0 9.8 53 33-87 195-248 (394)
49 2iw1_A Lipopolysaccharide core 79.2 23 0.00078 31.1 11.5 79 34-118 194-274 (374)
50 1ydg_A Trp repressor binding p 78.7 2.7 9.2E-05 35.6 5.1 41 35-75 6-46 (211)
51 3hrz_D Complement factor B; se 78.3 0.94 3.2E-05 45.5 2.5 91 9-104 324-433 (741)
52 3b6i_A Flavoprotein WRBA; flav 77.2 3.3 0.00011 34.3 5.2 41 36-76 2-43 (198)
53 3f6r_A Flavodoxin; FMN binding 76.8 3.2 0.00011 33.1 4.8 41 36-76 2-42 (148)
54 2vzf_A NADH-dependent FMN redu 73.5 3.9 0.00013 34.7 4.8 57 36-92 3-69 (197)
55 2ark_A Flavodoxin; FMN, struct 73.1 5.3 0.00018 33.5 5.4 41 35-75 4-45 (188)
56 3k1y_A Oxidoreductase; structu 72.8 4.7 0.00016 35.1 5.1 64 29-92 5-85 (191)
57 2ohh_A Type A flavoprotein FPR 71.8 20 0.0007 32.8 9.5 65 20-91 242-306 (404)
58 3fro_A GLGA glycogen synthase; 71.3 10 0.00036 33.9 7.3 55 37-91 252-310 (439)
59 2odp_A Complement C2; C3/C5 co 71.2 4.7 0.00016 38.7 5.2 91 11-104 92-199 (509)
60 3c48_A Predicted glycosyltrans 70.9 10 0.00035 34.5 7.2 84 34-118 241-329 (438)
61 1rrk_A Complement factor B; BB 69.5 17 0.00059 34.4 8.7 99 9-112 82-198 (497)
62 1p9c_A 26S proteasome non-ATPa 66.0 1.4 4.9E-05 31.2 0.3 19 217-235 18-36 (45)
63 3tem_A Ribosyldihydronicotinam 65.4 7.9 0.00027 34.3 5.1 41 35-75 1-43 (228)
64 2r60_A Glycosyl transferase, g 65.3 20 0.00069 33.5 8.2 65 35-99 261-340 (499)
65 5nul_A Flavodoxin; electron tr 65.3 6.1 0.00021 31.1 4.0 39 38-76 1-39 (138)
66 2xci_A KDO-transferase, 3-deox 65.1 22 0.00076 32.8 8.4 54 36-91 196-249 (374)
67 3r6w_A FMN-dependent NADH-azor 64.7 8.1 0.00028 33.0 4.9 40 36-75 2-46 (212)
68 1t5b_A Acyl carrier protein ph 64.5 8.7 0.0003 31.7 4.9 40 36-75 2-46 (201)
69 2amj_A Modulator of drug activ 63.7 12 0.00042 32.2 5.9 64 31-101 8-77 (204)
70 2ews_A Pantothenate kinase; PA 62.3 6.8 0.00023 36.6 4.3 45 20-66 223-267 (287)
71 2zki_A 199AA long hypothetical 62.0 9.5 0.00032 31.7 4.7 39 36-75 5-43 (199)
72 2q62_A ARSH; alpha/beta, flavo 61.7 8.7 0.0003 34.7 4.8 61 34-94 33-100 (247)
73 2fzv_A Putative arsenical resi 61.1 12 0.00042 34.7 5.8 61 34-94 57-125 (279)
74 1xmp_A PURE, phosphoribosylami 60.7 43 0.0015 29.7 8.8 81 28-112 4-84 (170)
75 3kij_A Probable glutathione pe 60.4 34 0.0012 27.8 7.8 53 37-89 41-99 (180)
76 1bvy_F Protein (cytochrome P45 59.8 8.9 0.00031 33.2 4.3 41 34-74 20-60 (191)
77 2q9u_A A-type flavoprotein; fl 59.6 32 0.0011 31.9 8.3 42 35-76 256-297 (414)
78 1rtt_A Conserved hypothetical 59.3 5.6 0.00019 33.3 2.9 57 35-92 6-72 (193)
79 2fz5_A Flavodoxin; alpha/beta 58.9 12 0.00042 28.8 4.6 39 38-76 2-40 (137)
80 1uqt_A Alpha, alpha-trehalose- 58.5 1E+02 0.0035 30.1 12.1 58 35-92 254-323 (482)
81 2f9f_A First mannosyl transfer 58.2 21 0.00072 28.8 6.1 48 35-88 22-70 (177)
82 1t0i_A YLR011WP; FMN binding p 58.0 12 0.00042 31.0 4.7 39 36-74 1-47 (191)
83 1czn_A Flavodoxin; FMN binding 56.1 12 0.00041 30.4 4.3 39 36-75 1-39 (169)
84 2db7_A Hairy/enhancer-OF-split 54.6 9.9 0.00034 28.5 3.2 27 285-311 31-57 (64)
85 1rzu_A Glycogen synthase 1; gl 54.4 52 0.0018 30.4 8.9 78 36-118 291-369 (485)
86 2hpv_A FMN-dependent NADH-azor 54.2 14 0.00048 31.0 4.5 38 36-73 2-45 (208)
87 1e5d_A Rubredoxin\:oxygen oxid 54.0 41 0.0014 30.8 8.0 41 35-75 252-292 (402)
88 1xzo_A BSSCO, hypothetical pro 53.6 33 0.0011 27.0 6.4 54 36-90 35-94 (174)
89 3fcs_B Integrin beta-3; beta p 53.4 46 0.0016 34.8 9.1 83 4-90 207-325 (690)
90 2lnd_A De novo designed protei 53.3 20 0.00068 29.0 5.0 56 33-92 49-104 (112)
91 3d3k_A Enhancer of mRNA-decapp 53.2 29 0.00098 31.7 6.8 58 17-76 59-124 (259)
92 3oow_A Phosphoribosylaminoimid 53.1 90 0.0031 27.5 9.6 73 36-112 6-78 (166)
93 3u7r_A NADPH-dependent FMN red 53.1 20 0.00069 31.1 5.5 60 35-94 2-69 (190)
94 1sqs_A Conserved hypothetical 52.8 13 0.00046 32.3 4.3 40 36-75 2-44 (242)
95 2d3g_P Ubiquitin interacting m 52.7 8.7 0.0003 24.5 2.2 17 153-169 5-21 (26)
96 3erw_A Sporulation thiol-disul 51.7 37 0.0013 25.4 6.2 55 36-91 35-93 (145)
97 2qzs_A Glycogen synthase; glyc 51.0 55 0.0019 30.3 8.4 79 35-118 291-370 (485)
98 3p0r_A Azoreductase; structura 50.6 19 0.00065 31.1 4.9 40 36-75 5-50 (211)
99 2hna_A Protein MIOC, flavodoxi 50.5 18 0.0006 28.9 4.4 36 36-71 2-37 (147)
100 3rg8_A Phosphoribosylaminoimid 49.7 89 0.003 27.2 8.9 54 36-93 3-56 (159)
101 3ors_A N5-carboxyaminoimidazol 48.9 90 0.0031 27.4 8.9 55 35-93 3-57 (163)
102 3fvw_A Putative NAD(P)H-depend 48.7 18 0.00061 30.7 4.3 65 36-103 3-76 (192)
103 3kuu_A Phosphoribosylaminoimid 48.0 96 0.0033 27.5 9.0 55 35-93 12-66 (174)
104 3d3j_A Enhancer of mRNA-decapp 47.8 35 0.0012 32.0 6.5 58 17-76 106-171 (306)
105 3svl_A Protein YIEF; E. coli C 47.8 9 0.00031 32.9 2.3 66 35-102 4-80 (193)
106 3oy2_A Glycosyltransferase B73 47.6 27 0.00092 31.4 5.6 58 35-92 183-245 (413)
107 1ykg_A SIR-FP, sulfite reducta 47.6 14 0.00049 30.4 3.5 40 35-74 9-48 (167)
108 3lp6_A Phosphoribosylaminoimid 47.6 71 0.0024 28.3 8.1 54 35-92 7-60 (174)
109 2iuy_A Avigt4, glycosyltransfe 47.3 36 0.0012 29.8 6.2 74 35-118 161-235 (342)
110 3k6s_A Integrin alpha-X; cell 47.2 15 0.00051 40.1 4.4 92 8-103 202-299 (1095)
111 1jzt_A Hypothetical 27.5 kDa p 46.4 43 0.0015 30.3 6.7 57 17-75 35-96 (246)
112 2iw1_A Lipopolysaccharide core 46.0 16 0.00056 32.0 3.8 39 36-74 1-41 (374)
113 3lcm_A SMU.1420, putative oxid 45.6 26 0.00088 29.8 4.9 63 36-101 1-80 (196)
114 1obo_A Flavodoxin; electron tr 45.6 22 0.00076 28.7 4.3 37 36-74 2-38 (169)
115 2rb4_A ATP-dependent RNA helic 45.6 22 0.00075 29.1 4.3 35 35-75 34-68 (175)
116 3f2v_A General stress protein 45.6 11 0.00038 32.8 2.6 56 36-91 2-57 (192)
117 3hcz_A Possible thiol-disulfid 45.3 87 0.003 23.5 7.5 45 43-91 43-87 (148)
118 2llw_A Heat shock protein STI1 45.2 14 0.00048 28.1 2.8 12 248-259 7-18 (71)
119 2p31_A CL683, glutathione pero 44.9 52 0.0018 26.8 6.5 53 37-89 52-110 (181)
120 4hde_A SCO1/SENC family lipopr 44.7 41 0.0014 27.6 5.8 67 36-102 34-106 (170)
121 1u11_A PURE (N5-carboxyaminoim 44.3 1E+02 0.0036 27.4 8.7 73 36-112 22-94 (182)
122 2gs3_A PHGPX, GPX-4, phospholi 44.2 49 0.0017 27.0 6.2 56 36-91 51-112 (185)
123 2jgn_A DBX, DDX3, ATP-dependen 44.2 33 0.0011 28.7 5.3 48 35-87 46-93 (185)
124 3rpe_A MDAB, modulator of drug 43.0 33 0.0011 30.6 5.4 41 36-76 26-72 (218)
125 3d7n_A Flavodoxin, WRBA-like p 42.6 18 0.00061 30.5 3.4 34 33-66 4-37 (193)
126 2k6v_A Putative cytochrome C o 42.1 37 0.0013 26.6 5.0 55 36-91 37-98 (172)
127 1ur4_A Galactanase; hydrolase, 41.8 1.3E+02 0.0044 29.2 9.7 82 10-98 83-198 (399)
128 1we0_A Alkyl hydroperoxide red 41.8 54 0.0018 26.7 6.1 51 35-90 32-86 (187)
129 1hjs_A Beta-1,4-galactanase; 4 41.6 80 0.0027 29.4 8.0 74 10-89 54-159 (332)
130 2o8n_A APOA-I binding protein; 41.1 57 0.0019 30.1 6.8 56 17-74 58-116 (265)
131 3trh_A Phosphoribosylaminoimid 41.1 1.3E+02 0.0045 26.5 8.8 54 35-92 6-59 (169)
132 3hr4_A Nitric oxide synthase, 41.0 32 0.0011 30.9 4.9 49 27-76 32-80 (219)
133 2ggt_A SCO1 protein homolog, m 40.8 61 0.0021 25.1 6.0 54 36-90 25-86 (164)
134 2x6q_A Trehalose-synthase TRET 40.5 28 0.00095 31.5 4.5 40 35-74 40-80 (416)
135 1ag9_A Flavodoxin; electron tr 40.4 28 0.00096 28.8 4.2 35 36-72 1-35 (175)
136 2wc1_A Flavodoxin; electron tr 39.9 14 0.00049 30.6 2.3 39 36-75 2-40 (182)
137 3lwa_A Secreted thiol-disulfid 39.5 85 0.0029 25.1 6.9 55 36-91 60-122 (183)
138 3gfs_A FMN-dependent NADPH-azo 39.2 26 0.00088 28.7 3.8 59 36-94 1-65 (174)
139 2r37_A Glutathione peroxidase 39.1 95 0.0033 26.6 7.5 55 36-91 40-100 (207)
140 2obi_A PHGPX, GPX-4, phospholi 38.7 69 0.0024 25.9 6.3 55 36-90 49-109 (183)
141 1xvw_A Hypothetical protein RV 38.3 24 0.00084 27.6 3.3 51 36-91 38-92 (160)
142 1zi8_A Carboxymethylenebutenol 38.2 1.5E+02 0.0051 23.5 8.3 76 18-106 126-202 (236)
143 3rss_A Putative uncharacterize 38.1 62 0.0021 32.4 6.9 56 17-75 35-90 (502)
144 2p5q_A Glutathione peroxidase 38.0 74 0.0025 24.7 6.2 52 37-88 35-92 (170)
145 4b4k_A N5-carboxyaminoimidazol 38.0 1.9E+02 0.0065 25.8 9.3 73 37-113 24-96 (181)
146 3r3h_A O-methyltransferase, SA 37.7 31 0.0011 30.1 4.3 67 39-105 139-212 (242)
147 2kln_A Probable sulphate-trans 37.4 75 0.0026 24.8 6.1 67 7-73 19-89 (130)
148 3otg_A CALG1; calicheamicin, T 37.4 23 0.00077 31.9 3.4 44 29-73 14-57 (412)
149 4hs4_A Chromate reductase; tri 37.4 23 0.00078 30.6 3.3 64 35-101 6-80 (199)
150 1f0k_A MURG, UDP-N-acetylgluco 37.3 2.1E+02 0.0071 24.9 11.1 78 37-120 185-280 (364)
151 3me7_A Putative uncharacterize 37.2 35 0.0012 27.7 4.3 66 36-101 30-100 (170)
152 4dgh_A Sulfate permease family 37.2 90 0.0031 24.3 6.6 62 7-72 24-89 (130)
153 3dwv_A Glutathione peroxidase- 37.2 45 0.0015 27.4 4.9 52 37-88 49-106 (187)
154 1d4a_A DT-diaphorase, quinone 37.1 42 0.0014 30.2 5.2 40 36-75 3-44 (273)
155 1xmx_A Hypothetical protein VC 37.1 88 0.003 29.9 7.6 70 35-107 27-99 (385)
156 2vup_A Glutathione peroxidase- 36.9 85 0.0029 25.7 6.6 55 36-90 50-111 (190)
157 2c0d_A Thioredoxin peroxidase 36.8 49 0.0017 28.7 5.3 51 36-91 58-112 (221)
158 3u7i_A FMN-dependent NADH-azor 36.7 43 0.0015 29.4 5.0 41 35-75 4-52 (223)
159 4amg_A Snogd; transferase, pol 36.5 24 0.00082 31.6 3.4 38 34-72 21-58 (400)
160 2wfc_A Peroxiredoxin 5, PRDX5; 36.5 33 0.0011 28.2 4.0 51 36-91 33-89 (167)
161 2wte_A CSA3; antiviral protein 36.3 1.8E+02 0.0061 26.1 9.1 85 32-118 31-117 (244)
162 2bmx_A Alkyl hydroperoxidase C 36.3 59 0.002 26.7 5.6 50 36-90 47-100 (195)
163 2rli_A SCO2 protein homolog, m 36.3 78 0.0027 24.7 6.1 53 37-90 29-89 (171)
164 1ycg_A Nitric oxide reductase; 35.8 96 0.0033 28.2 7.4 41 35-75 251-291 (398)
165 2aze_C Retinoblastoma-associat 35.3 38 0.0013 24.1 3.5 35 69-104 4-38 (46)
166 4grd_A N5-CAIR mutase, phospho 35.1 2.4E+02 0.0081 25.0 9.6 77 33-113 10-86 (173)
167 1fuk_A Eukaryotic initiation f 35.0 26 0.0009 28.3 3.1 35 35-75 30-64 (165)
168 1t5i_A C_terminal domain of A 35.0 23 0.0008 29.1 2.8 36 35-76 31-66 (172)
169 3s2y_A Chromate reductase; ura 41.1 8.2 0.00028 33.4 0.0 40 34-74 5-47 (199)
170 2vch_A Hydroquinone glucosyltr 34.6 45 0.0015 32.2 5.2 63 36-104 6-71 (480)
171 3hp4_A GDSL-esterase; psychrot 34.5 61 0.0021 25.6 5.2 68 37-105 3-76 (185)
172 2vsy_A XCC0866; transferase, g 34.4 48 0.0016 31.5 5.3 54 37-91 377-430 (568)
173 2hjv_A ATP-dependent RNA helic 34.3 17 0.00058 29.4 1.9 35 35-75 35-69 (163)
174 4g85_A Histidine-tRNA ligase, 34.1 39 0.0013 33.2 4.7 81 15-101 393-477 (517)
175 4g84_A Histidine--tRNA ligase, 34.0 37 0.0013 32.3 4.4 35 36-70 365-399 (464)
176 2i3y_A Epididymal secretory gl 33.9 1.1E+02 0.0037 26.6 7.1 53 37-90 59-117 (215)
177 2iya_A OLEI, oleandomycin glyc 33.8 82 0.0028 28.7 6.6 65 27-104 4-68 (424)
178 3k6s_B Integrin beta-2; cell r 33.7 30 0.001 36.2 4.0 35 53-91 282-316 (687)
179 4akg_A Glutathione S-transfera 33.6 24 0.00084 42.4 3.7 38 36-76 2386-2423(2695)
180 3l6u_A ABC-type sugar transpor 33.6 2E+02 0.007 24.2 8.7 69 34-106 6-76 (293)
181 4b4t_W RPN10, 26S proteasome r 33.5 8.9 0.0003 35.7 0.0 19 247-265 221-239 (268)
182 3drn_A Peroxiredoxin, bacterio 33.2 37 0.0013 26.9 3.7 50 37-91 32-85 (161)
183 1yob_A Flavodoxin 2, flavodoxi 33.0 22 0.00075 29.5 2.4 38 36-74 1-38 (179)
184 2iuy_A Avigt4, glycosyltransfe 32.9 49 0.0017 28.9 4.7 41 36-76 4-59 (342)
185 1o4v_A Phosphoribosylaminoimid 32.7 2.4E+02 0.0081 25.2 9.1 58 32-93 10-67 (183)
186 3ny7_A YCHM protein, sulfate t 32.7 62 0.0021 25.2 4.9 61 7-72 21-85 (118)
187 1zof_A Alkyl hydroperoxide-red 32.7 40 0.0014 27.8 3.9 53 35-92 34-90 (198)
188 3bk2_A RNAse J, metal dependen 32.1 1.2E+02 0.004 30.2 7.8 79 21-104 323-407 (562)
189 1f0k_A MURG, UDP-N-acetylgluco 32.0 47 0.0016 29.2 4.5 38 36-74 7-44 (364)
190 4gi5_A Quinone reductase; prot 32.0 60 0.0021 30.0 5.4 42 34-75 21-64 (280)
191 3eaq_A Heat resistant RNA depe 31.8 24 0.00081 30.2 2.4 36 35-76 31-66 (212)
192 2v1m_A Glutathione peroxidase; 31.4 1.3E+02 0.0044 23.3 6.6 55 36-90 33-94 (169)
193 2f8a_A Glutathione peroxidase 31.3 99 0.0034 26.3 6.3 55 37-91 50-110 (208)
194 2p6n_A ATP-dependent RNA helic 31.2 40 0.0014 28.4 3.7 46 36-87 55-101 (191)
195 2x31_A Magnesium-chelatase 60 31.1 1E+02 0.0035 24.9 6.1 48 43-90 20-74 (189)
196 3pey_A ATP-dependent RNA helic 31.1 41 0.0014 29.8 4.0 47 35-86 243-289 (395)
197 1wp9_A ATP-dependent RNA helic 31.0 65 0.0022 28.9 5.3 33 34-71 360-392 (494)
198 3qjg_A Epidermin biosynthesis 30.8 54 0.0018 28.4 4.6 35 35-71 5-39 (175)
199 4dgf_A Sulfate transporter sul 30.8 66 0.0022 25.5 4.8 62 7-72 27-92 (135)
200 3gl3_A Putative thiol:disulfid 30.7 72 0.0025 24.3 4.9 40 48-91 45-84 (152)
201 4dyv_A Short-chain dehydrogena 30.6 91 0.0031 27.5 6.1 64 13-76 133-211 (272)
202 3s28_A Sucrose synthase 1; gly 30.5 69 0.0024 33.9 6.1 66 33-98 569-644 (816)
203 3ixr_A Bacterioferritin comigr 30.3 54 0.0018 26.8 4.3 49 37-90 54-106 (179)
204 2gek_A Phosphatidylinositol ma 30.2 64 0.0022 28.5 5.1 43 34-76 19-64 (406)
205 1nks_A Adenylate kinase; therm 30.1 47 0.0016 26.4 3.8 38 36-73 1-38 (194)
206 2f9s_A Thiol-disulfide oxidore 30.0 1.5E+02 0.0051 22.6 6.7 40 48-91 43-82 (151)
207 1r30_A Biotin synthase; SAM ra 30.0 96 0.0033 28.7 6.5 41 45-89 128-168 (369)
208 1tvm_A PTS system, galactitol- 30.0 78 0.0027 25.0 5.1 42 35-76 21-62 (113)
209 2l5o_A Putative thioredoxin; s 30.0 1.2E+02 0.0041 23.0 6.1 52 37-91 31-85 (153)
210 3lor_A Thiol-disulfide isomera 29.8 59 0.002 25.0 4.3 55 37-91 33-93 (160)
211 3up9_A Putative uncharacterize 29.6 16 0.00056 33.7 1.1 32 44-76 14-46 (245)
212 2h01_A 2-Cys peroxiredoxin; th 29.6 75 0.0026 26.0 5.1 51 36-91 33-87 (192)
213 1kht_A Adenylate kinase; phosp 29.5 45 0.0015 26.6 3.6 37 37-73 4-40 (192)
214 3hs3_A Ribose operon repressor 29.4 1.7E+02 0.0059 24.8 7.5 65 19-88 108-174 (277)
215 3sc4_A Short chain dehydrogena 29.0 1E+02 0.0036 27.0 6.3 60 13-74 123-198 (285)
216 3okf_A 3-dehydroquinate syntha 29.0 1.3E+02 0.0043 29.2 7.3 72 35-111 62-138 (390)
217 3llo_A Prestin; STAS domain, c 28.7 81 0.0028 24.9 5.0 66 7-72 34-104 (143)
218 1qzu_A Hypothetical protein MD 28.7 53 0.0018 29.1 4.2 35 35-71 19-54 (206)
219 1g63_A Epidermin modifying enz 28.3 58 0.002 28.3 4.3 35 35-71 2-36 (181)
220 2ka5_A Putative anti-sigma fac 28.3 1.2E+02 0.0042 23.6 5.9 63 7-72 25-92 (125)
221 3gbv_A Putative LACI-family tr 28.0 2.7E+02 0.0093 23.4 9.3 55 50-105 25-80 (304)
222 1p3y_1 MRSD protein; flavoprot 27.9 52 0.0018 28.9 4.0 35 35-71 8-42 (194)
223 1jfu_A Thiol:disulfide interch 27.8 1.1E+02 0.0037 24.4 5.7 52 37-91 63-117 (186)
224 3u5r_E Uncharacterized protein 27.7 92 0.0032 26.3 5.5 55 37-91 62-122 (218)
225 3k5w_A Carbohydrate kinase; 11 27.0 1.1E+02 0.0038 30.3 6.7 53 18-76 32-84 (475)
226 3d3w_A L-xylulose reductase; u 26.9 1.1E+02 0.0039 25.5 5.9 63 13-76 106-183 (244)
227 2lja_A Putative thiol-disulfid 26.7 1.3E+02 0.0046 22.7 5.8 51 37-91 33-86 (152)
228 1th8_B Anti-sigma F factor ant 26.6 65 0.0022 24.0 3.9 65 6-72 15-83 (116)
229 2p08_A Signal transduction his 26.4 7.5 0.00026 31.5 -1.6 25 36-60 90-114 (115)
230 3o38_A Short chain dehydrogena 26.3 1.4E+02 0.0049 25.4 6.5 63 13-76 131-208 (266)
231 1vp8_A Hypothetical protein AF 26.3 1.1E+02 0.0037 27.9 5.8 76 31-114 10-92 (201)
232 2ywi_A Hypothetical conserved 26.2 98 0.0033 24.9 5.1 55 37-91 49-109 (196)
233 3icc_A Putative 3-oxoacyl-(acy 25.6 1.6E+02 0.0053 24.8 6.5 60 13-76 121-195 (255)
234 2pwj_A Mitochondrial peroxired 25.4 1E+02 0.0035 25.2 5.2 44 43-91 56-101 (171)
235 1h5q_A NADP-dependent mannitol 25.4 1E+02 0.0035 26.0 5.3 63 13-76 122-206 (265)
236 2a4v_A Peroxiredoxin DOT5; yea 25.4 86 0.003 24.6 4.6 43 43-91 48-90 (159)
237 3zqu_A Probable aromatic acid 25.2 83 0.0028 28.0 4.9 35 35-71 4-38 (209)
238 3cmi_A Peroxiredoxin HYR1; thi 25.2 80 0.0028 25.1 4.4 54 36-90 34-94 (171)
239 1e2b_A Enzyme IIB-cellobiose; 25.2 1.1E+02 0.0038 24.0 5.1 40 36-76 4-43 (106)
240 4aq4_A SN-glycerol-3-phosphate 25.2 1.4E+02 0.0047 26.7 6.3 52 48-103 17-70 (419)
241 1xti_A Probable ATP-dependent 25.1 45 0.0015 29.7 3.1 32 35-71 250-281 (391)
242 2acv_A Triterpene UDP-glucosyl 25.1 1.1E+02 0.0039 29.2 6.1 65 37-104 10-77 (463)
243 1vgv_A UDP-N-acetylglucosamine 25.0 1.1E+02 0.0037 27.0 5.6 16 295-310 325-340 (384)
244 3t5t_A Putative glycosyltransf 25.0 2.5E+02 0.0084 28.1 8.7 29 147-175 420-452 (496)
245 4e6p_A Probable sorbitol dehyd 24.9 3E+02 0.01 23.5 8.3 77 13-90 112-203 (259)
246 3kcm_A Thioredoxin family prot 24.9 1.8E+02 0.0062 22.0 6.3 52 37-91 30-85 (154)
247 2pn8_A Peroxiredoxin-4; thiore 24.9 59 0.002 27.7 3.7 50 36-90 50-103 (211)
248 2lrn_A Thiol:disulfide interch 24.8 1.2E+02 0.0042 23.3 5.3 51 36-90 31-84 (152)
249 1hv8_A Putative ATP-dependent 24.8 68 0.0023 28.0 4.2 33 34-71 237-269 (367)
250 3gkn_A Bacterioferritin comigr 24.8 82 0.0028 24.6 4.3 49 37-90 38-90 (163)
251 3nrc_A Enoyl-[acyl-carrier-pro 24.7 1.5E+02 0.0051 25.8 6.4 61 13-76 138-213 (280)
252 1sui_A Caffeoyl-COA O-methyltr 24.3 80 0.0027 27.5 4.6 67 39-105 159-238 (247)
253 3qbr_A SJA, sjchgc06286 protei 24.2 32 0.0011 30.6 1.9 31 280-311 36-67 (179)
254 1fob_A Beta-1,4-galactanase; B 24.1 3E+02 0.01 25.4 8.6 61 10-76 54-137 (334)
255 3g40_A Na-K-CL cotransporter; 24.1 2.1E+02 0.0072 27.2 7.6 55 13-71 176-232 (294)
256 3nbm_A PTS system, lactose-spe 24.1 95 0.0032 24.8 4.6 44 32-76 3-48 (108)
257 1mxh_A Pteridine reductase 2; 24.0 1.8E+02 0.0062 24.9 6.8 64 13-76 135-216 (276)
258 3nkl_A UDP-D-quinovosamine 4-d 24.0 2.5E+02 0.0084 21.6 8.1 73 18-103 16-100 (141)
259 3e03_A Short chain dehydrogena 24.0 1.9E+02 0.0065 25.1 7.0 62 13-76 120-199 (274)
260 3fro_A GLGA glycogen synthase; 23.9 90 0.0031 27.7 4.9 39 35-73 2-44 (439)
261 1mvl_A PPC decarboxylase athal 23.8 82 0.0028 28.1 4.6 34 35-71 19-52 (209)
262 3vi3_B Integrin beta-1; beta p 23.7 2.4E+02 0.0082 28.3 8.3 82 4-90 216-332 (454)
263 4fzr_A SSFS6; structural genom 23.6 56 0.0019 29.5 3.5 43 30-73 10-52 (398)
264 2yjt_D ATP-dependent RNA helic 29.2 17 0.00058 29.7 0.0 49 34-87 29-77 (170)
265 3tzq_B Short-chain type dehydr 23.5 1.6E+02 0.0056 25.5 6.4 62 13-76 117-193 (271)
266 3rag_A Uncharacterized protein 23.4 1.7E+02 0.006 26.8 6.8 54 52-111 26-82 (242)
267 2ejb_A Probable aromatic acid 23.4 88 0.003 27.3 4.6 34 36-71 2-35 (189)
268 1uay_A Type II 3-hydroxyacyl-C 23.1 1.3E+02 0.0046 24.8 5.6 64 13-76 100-182 (242)
269 1g91_A MPIF-1, myeloid progeni 23.1 46 0.0016 25.2 2.4 21 295-315 52-72 (77)
270 3o74_A Fructose transport syst 23.0 2E+02 0.0069 23.8 6.7 43 34-76 119-162 (272)
271 2p6p_A Glycosyl transferase; X 23.0 84 0.0029 28.1 4.5 36 36-72 1-36 (384)
272 1tp9_A Peroxiredoxin, PRX D (t 23.0 95 0.0032 24.8 4.4 50 37-91 38-93 (162)
273 2i4i_A ATP-dependent RNA helic 22.9 79 0.0027 28.5 4.3 33 34-71 275-307 (417)
274 3vkg_A Dynein heavy chain, cyt 22.9 33 0.0011 42.0 2.3 37 37-76 2645-2681(3245)
275 2a4k_A 3-oxoacyl-[acyl carrier 22.8 2.2E+02 0.0075 24.7 7.1 60 13-76 110-183 (263)
276 2pk2_A Cyclin-T1, protein TAT; 22.7 18 0.00062 34.4 0.0 15 48-62 229-243 (358)
277 3rkr_A Short chain oxidoreduct 22.5 1.8E+02 0.0061 25.0 6.4 62 13-76 137-213 (262)
278 3egc_A Putative ribose operon 22.4 3.1E+02 0.011 23.1 7.9 66 35-104 7-74 (291)
279 2x0d_A WSAF; GT4 family, trans 22.4 65 0.0022 30.3 3.8 46 29-74 40-89 (413)
280 4e4y_A Short chain dehydrogena 22.4 2.7E+02 0.0091 23.5 7.4 60 13-76 100-174 (244)
281 2jah_A Clavulanic acid dehydro 22.3 1.2E+02 0.004 26.0 5.2 61 13-76 114-189 (247)
282 3or5_A Thiol:disulfide interch 22.2 1E+02 0.0035 23.7 4.4 40 48-91 51-90 (165)
283 1xjc_A MOBB protein homolog; s 22.2 1.1E+02 0.0037 26.1 4.8 40 35-75 3-43 (169)
284 2f62_A Nucleoside 2-deoxyribos 22.0 81 0.0028 26.9 4.0 35 32-66 5-42 (161)
285 3fht_A ATP-dependent RNA helic 22.0 48 0.0016 29.7 2.7 32 35-71 266-297 (412)
286 3pxx_A Carveol dehydrogenase; 22.0 1.2E+02 0.004 26.2 5.1 60 13-76 127-212 (287)
287 3vue_A GBSS-I, granule-bound s 21.9 1E+02 0.0035 30.3 5.2 39 32-71 6-50 (536)
288 2ywx_A Phosphoribosylaminoimid 21.9 3.6E+02 0.012 23.4 8.1 50 37-90 1-50 (157)
289 3tjj_A Peroxiredoxin-4; thiore 21.8 1.1E+02 0.0039 27.1 5.1 49 37-90 94-146 (254)
290 3tl3_A Short-chain type dehydr 21.5 2.7E+02 0.0091 23.7 7.3 64 13-76 113-197 (257)
291 1o2d_A Alcohol dehydrogenase, 21.4 2.9E+02 0.0099 25.8 8.1 68 36-104 41-108 (371)
292 1wma_A Carbonyl reductase [NAD 21.4 1.8E+02 0.0062 24.3 6.1 28 13-44 112-139 (276)
293 3c48_A Predicted glycosyltrans 21.4 1.2E+02 0.0042 27.2 5.3 43 33-75 18-70 (438)
294 2yvu_A Probable adenylyl-sulfa 21.3 1.5E+02 0.0052 23.8 5.4 40 31-70 8-47 (186)
295 2bmv_A Flavodoxin; electron tr 21.2 1E+02 0.0035 24.8 4.3 35 36-74 2-36 (164)
296 1qmv_A Human thioredoxin perox 21.1 81 0.0028 25.9 3.7 50 36-90 36-89 (197)
297 1hxh_A 3BETA/17BETA-hydroxyste 21.1 1.2E+02 0.0043 25.8 5.1 60 14-76 111-187 (253)
298 3cbg_A O-methyltransferase; cy 21.0 76 0.0026 27.1 3.6 67 39-105 151-224 (232)
299 4e3z_A Putative oxidoreductase 21.0 2.5E+02 0.0084 24.2 7.0 64 13-76 135-215 (272)
300 3dx5_A Uncharacterized protein 21.0 2.5E+02 0.0086 24.0 7.0 58 35-92 98-164 (286)
301 1jmv_A USPA, universal stress 21.0 2.7E+02 0.0092 20.9 7.1 58 37-104 82-139 (141)
302 2bgk_A Rhizome secoisolaricire 21.0 1.1E+02 0.0038 26.1 4.7 62 13-76 124-201 (278)
303 1zye_A Thioredoxin-dependent p 21.0 1.4E+02 0.0049 25.3 5.4 50 36-90 58-111 (220)
304 3pgx_A Carveol dehydrogenase; 20.9 1.6E+02 0.0056 25.5 5.9 63 13-76 135-212 (280)
305 3uve_A Carveol dehydrogenase ( 20.9 1.6E+02 0.0056 25.5 5.8 63 13-76 135-212 (286)
306 2p91_A Enoyl-[acyl-carrier-pro 20.9 1.3E+02 0.0043 26.3 5.2 61 13-76 133-208 (285)
307 1vl8_A Gluconate 5-dehydrogena 20.8 2.2E+02 0.0074 24.7 6.6 62 13-76 129-206 (267)
308 2fcr_A Flavodoxin; electron tr 20.7 83 0.0028 25.7 3.7 35 37-73 1-35 (173)
309 1xq1_A Putative tropinone redu 20.7 1.6E+02 0.0053 25.1 5.6 62 13-76 122-198 (266)
310 3sju_A Keto reductase; short-c 20.6 1.2E+02 0.004 26.7 4.9 64 13-76 131-209 (279)
311 2b7k_A SCO1 protein; metalloch 20.6 1.4E+02 0.0049 24.7 5.2 54 36-90 43-103 (200)
312 3ijr_A Oxidoreductase, short c 20.5 1.8E+02 0.0061 25.7 6.1 60 13-76 156-230 (291)
313 3t7c_A Carveol dehydrogenase; 20.5 1.5E+02 0.0053 26.1 5.7 62 13-76 148-225 (299)
314 3t68_A Succinyl-diaminopimelat 20.4 92 0.0032 27.3 4.2 66 11-76 100-168 (268)
315 3puk_A Syntaxin-binding protei 20.3 1E+02 0.0035 31.3 4.9 52 32-91 526-578 (592)
316 3guy_A Short-chain dehydrogena 20.2 2.5E+02 0.0086 23.4 6.7 62 12-76 101-177 (230)
317 2l2q_A PTS system, cellobiose- 20.2 1.3E+02 0.0045 23.3 4.6 40 36-76 5-44 (109)
318 2b4q_A Rhamnolipids biosynthes 20.1 1.5E+02 0.0051 26.0 5.4 64 13-76 135-216 (276)
319 3i32_A Heat resistant RNA depe 20.1 66 0.0023 29.6 3.2 47 35-87 28-75 (300)
320 3e9n_A Putative short-chain de 20.1 1.4E+02 0.0046 25.3 5.0 61 13-76 105-180 (245)
321 3fw2_A Thiol-disulfide oxidore 20.0 1.7E+02 0.0058 22.4 5.2 51 37-91 36-92 (150)
No 1
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-60 Score=442.03 Aligned_cols=179 Identities=45% Similarity=0.709 Sum_probs=116.9
Q ss_pred CCCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHH
Q 020031 2 LLDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 81 (332)
Q Consensus 2 ~~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~ 81 (332)
.+||.++++|.++|.+||++|+++||||++|++++|||+|+|||+..++++|++|+|+|||+||.||||.||+.+ .|.+
T Consensus 74 ~aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~-~n~~ 152 (268)
T 4b4t_W 74 AGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE-QNTE 152 (268)
T ss_dssp HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCC-SSCC
T ss_pred HHhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCc-cchH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHhc--CCCceEEEeCCCCchhhHHhhhcCcccCCCCCCCchhHhHHhhhcCCCCCCcccCCCCCCHHHHHHH
Q 020031 82 KLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALAL 159 (332)
Q Consensus 82 kL~~fi~~vN~--~~~Shlv~VP~G~~~LsD~l~sSpI~~ge~~~g~~~~~~~~~~~~~~~~~fefGvDP~~DPELAmAL 159 (332)
||++|++++|+ +++||||+|||||++|||+|+|||||.|+|.+++++.++++|++++++++|||||||++||||||||
T Consensus 153 kLe~l~~~~Ng~~~~~s~~v~v~~g~~~lsd~l~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~dpela~al 232 (268)
T 4b4t_W 153 LLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMAL 232 (268)
T ss_dssp HHHHHHHHHCSSTTTSCEEEEECCCSSCHHHHHHTSTTSCCCCC------------------------------------
T ss_pred HHHHHHHHhcCCCCCceeEEEeCCCCccHHHHHhcCCccccCCccccccccccccccccCCcccccCCCCCCCHHHHHHH
Confidence 99999999998 5799999999999999999999999999885433322222334455667899999999999999999
Q ss_pred HhcHHHHHHHHHHHHHHHHHHH
Q 020031 160 RVSMEEERARQEAAAKRAAEEA 181 (332)
Q Consensus 160 R~SmEEEr~RQe~~~~~~~~~~ 181 (332)
||||||||+|||++++++.+.+
T Consensus 233 r~s~eee~~rq~~~~~~~~~~~ 254 (268)
T 4b4t_W 233 RLSMEEEQQRQERLRQQQQQQD 254 (268)
T ss_dssp ----------------------
T ss_pred HHhHHHHHHHHHHHhhcccccc
Confidence 9999999999999987765443
No 2
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=99.95 E-value=3.4e-28 Score=207.74 Aligned_cols=102 Identities=42% Similarity=0.600 Sum_probs=74.1
Q ss_pred cCCCCCCcccCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccccccCCCCCCCccccccccc
Q 020031 137 ASGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQDVTMTDQDSVPASEADDKKKT 216 (332)
Q Consensus 137 ~~~~~~fefGvDP~~DPELAmALR~SmEEEr~RQe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (332)
+.|+++|+|||||++||||||||||||||||+||+++++++.+.++. .. + .++ +. .
T Consensus 24 ~~~~~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa----~~----~-~a~--------~~-------~ 79 (132)
T 1yx4_A 24 GLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAA----EA----G-IAT--------TG-------T 79 (132)
T ss_dssp CCCSSSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SS----S-SSC--------CC-------C
T ss_pred ccCccccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhcccccc----cc----c-ccc--------cC-------C
Confidence 34567899999999999999999999999999999999877655431 10 0 000 00 1
Q ss_pred CCCchhHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhcccCCC
Q 020031 217 TKHDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGT 266 (332)
Q Consensus 217 ~~~ed~~L~qALamS~~~~~~~~~d~~~~~~~~Eee~ia~AlqmSmq~~~ 266 (332)
...++++|++++.++-... ....++ +.||||++|+||||||||+..
T Consensus 80 ~~~eeamL~~a~~~~~~~~---~~~~d~-~~MtEEeqLa~ALqMSMQe~~ 125 (132)
T 1yx4_A 80 EDSDDALLKMTISQQEFGR---TGLPDL-SSMTEEEQIAYAMQMSLQGAE 125 (132)
T ss_dssp CSCHHHHHHHHHHHHHHHH---SSCCCS-TTSCHHHHHHHHHHHSSSSCS
T ss_pred cccHHHHHHHhhcccccCC---CCCCch-hhCChHHHHHHHHHhcccccc
Confidence 2456789999987663211 122333 789999999999999999764
No 3
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.3e-25 Score=198.33 Aligned_cols=116 Identities=46% Similarity=0.747 Sum_probs=108.4
Q ss_pred CCcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHH
Q 020031 3 LDAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEK 82 (332)
Q Consensus 3 ~lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~k 82 (332)
.||.+.++|..++..||++|..+|||+.++.+++|||+|+++++..+..++.+++++|||++|.|++|.||... .|.+
T Consensus 74 ~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~-~~~~- 151 (192)
T 2x5n_A 74 AMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ-NESA- 151 (192)
T ss_dssp HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC----CH-
T ss_pred HHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCC-ccHH-
Confidence 47889999999999999999999999999999999999999999878999999999999999999999999988 6777
Q ss_pred HHHHHHHHhcCCCceEEEeCCCCchhhHHhhhcCcccC
Q 020031 83 LEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTG 120 (332)
Q Consensus 83 L~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~sSpI~~g 120 (332)
|+.|++++|++++|||++||+|+++|+|.|++||||.|
T Consensus 152 l~~la~~~n~~~~s~~~~~~~~~~~l~d~~~~s~~~~~ 189 (192)
T 2x5n_A 152 LQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPIGQG 189 (192)
T ss_dssp HHHHHHHHCSTTCCEEEEECCCSSCHHHHHHTSTTSCC
T ss_pred HHHHHHhccCCCceEEEEecCcchhHHHHHhcCccccc
Confidence 99999999999999999999999999999999999975
No 4
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.23 E-value=9.5e-07 Score=88.87 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=59.0
Q ss_pred Ccc-cccC-ccccHHHHHHHHHHHhhhc--CCccccceEEEEe--cCCCcccHHHHHHHHHHhhhccceee-EEEecCC
Q 020031 4 DAG-LEIG-GELNLAAGIQVAQLALKHR--QNKKQQQRIIVFV--GSPIKHEKKVLEMIGRKLKKNSVALD-IVNFGED 75 (332)
Q Consensus 4 lH~-i~i~-G~~~~~~gIqiA~LALKHR--qnK~~~qRIIvFV--GSPi~~dek~L~klaKkLKKnnVavD-II~FGe~ 75 (332)
||. +.++ +..+|..||.+|...|+|+ .+|..++|||+|. ++|+. ...+.++|++||+++|.|+ ||.||-.
T Consensus 94 l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~--~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 94 IESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFS--KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCC--CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCC--HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 344 5555 6789999999999999999 5566789999999 88974 4579999999999999999 8888854
No 5
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=97.49 E-value=1.9e-05 Score=57.72 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=32.3
Q ss_pred CchhHHHHHHHhcCCCCCCCCCCCCCCCCCCChHHHHHHHHhcccCCCC
Q 020031 219 HDEGLLQEAIAMSSTPSYPSGRDTNMSEVAEDDPELALALQLSMQDGTK 267 (332)
Q Consensus 219 ~ed~~L~qALamS~~~~~~~~~d~~~~~~~~Eee~ia~AlqmSmq~~~~ 267 (332)
++++.||+||++|.++. +..+||..|.+|||+|||....
T Consensus 5 EDEedlqrALalSRQE~----------dmEDeeadLrrAiqLSmQGss~ 43 (52)
T 2klz_A 5 EDEEDLQRALALSRQEI----------DMEDEEADLRRAIQLSMQGSSR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHH----------CCSSSHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHHHHHh----------ccchhHHHHHHHHHHHhhcccc
Confidence 35679999999999875 3567889999999999997644
No 6
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=97.12 E-value=0.00012 Score=52.43 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.7
Q ss_pred CCCCChHHHHHHHHhcccCCC
Q 020031 246 EVAEDDPELALALQLSMQDGT 266 (332)
Q Consensus 246 ~~~~Eee~ia~AlqmSmq~~~ 266 (332)
..|+||++|++|||||||+.+
T Consensus 17 ~~mteeeqla~ALqMSmq~~~ 37 (45)
T 1p9c_A 17 SSMTEEEQIAYAMQMSLQGAE 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHTSSSS
T ss_pred hccCchHHHHHHHHhcccccc
Confidence 578999999999999999764
No 7
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.45 E-value=0.0054 Score=62.46 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=57.6
Q ss_pred ccccHHHHHHHHHHHhhhcCCccccceEEEEec--CCCcccH---HHHHHHHHHhhhccceeeEEEecCCC
Q 020031 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVG--SPIKHEK---KVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVG--SPi~~de---k~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
...+|..||.+|.-.|++++.|..++|||+|-. +|...+. ..+..+|+.|++++|.|.+|-+|...
T Consensus 139 ~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~ 209 (609)
T 1jey_A 139 SDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPG 209 (609)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTT
T ss_pred CCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCC
Confidence 468999999999999999977767899999998 7776543 57899999999999999999998763
No 8
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=96.37 E-value=0.013 Score=52.77 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=65.2
Q ss_pred ccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 87 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi 87 (332)
.++|..++..||+.|.-.|..+..+....++||++-.=...+...+...+++||+.+|.|-.|-||... +.+.|+.+.
T Consensus 101 ~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~~--~~~~L~~iA 178 (281)
T 4hqf_A 101 LPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQGI--NVAFNRFLV 178 (281)
T ss_dssp GGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSSC--CHHHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCcc--CHHHHHhhh
Confidence 358889999999999777766544444566666664433345678899999999999999999999865 445555443
Q ss_pred HHHhcCCCceEEEeCCCC
Q 020031 88 AAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 88 ~~vN~~~~Shlv~VP~G~ 105 (332)
..-..++++|++.+..-.
T Consensus 179 ~~~~~~g~~~~~~~~~~~ 196 (281)
T 4hqf_A 179 GCHPSDGKCNLYADSAWE 196 (281)
T ss_dssp TSCSSSSCCTTEEEECGG
T ss_pred CCCCCCCCCceEEecchh
Confidence 211011126888876643
No 9
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=96.35 E-value=0.029 Score=46.03 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=65.1
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEe--cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHH
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV--GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLE 84 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV--GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~ 84 (332)
+.++|..++..||+.|.=.|+++..+. +.|+|+|+ |-|-......+...++.+++.+|.|-.|-||. .+...|+
T Consensus 76 ~~~~g~T~~~~al~~a~~~l~~~~~~~-~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~---~~~~~L~ 151 (182)
T 1shu_X 76 VSPVGETYIHEGLKLANEQIQKAGGLK-TSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD---FEQAQLE 151 (182)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHTGGG-SCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS---CCHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHhccCCC-CCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCc---CCHHHHH
Confidence 457899999999999988888775444 44555555 44443344567889999999999999999994 3445555
Q ss_pred HHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 85 ALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 85 ~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
.+- +. +.|.+.+.....-|.+++
T Consensus 152 ~ia----~~-~~~~~~~~~~~~~L~~~~ 174 (182)
T 1shu_X 152 RIA----DS-KEQVFPVKGGFQALKGII 174 (182)
T ss_dssp HHS----SS-GGGEEESSSTTHHHHHHH
T ss_pred HHh----CC-CCceEEccCCHHHHHHHH
Confidence 442 22 345666664444455543
No 10
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=96.17 E-value=0.021 Score=51.25 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=66.4
Q ss_pred ccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 87 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi 87 (332)
..+|..++..||+.|.-.|+.+..+....|+|+++-.=...+...+...+++||+.+|.|-.|-||... +.+.|+.+.
T Consensus 98 ~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~--~~~~L~~iA 175 (266)
T 4hqo_A 98 TPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGI--NHQFNRLIA 175 (266)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSSC--CHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCccc--CHHHHHHhh
Confidence 568899999999999877877633333455555553333336678899999999999999999999855 555555554
Q ss_pred HHHhcCCCceEEEeCCCCchhhH
Q 020031 88 AAVNNNDSSHLVHVPPGPNALSD 110 (332)
Q Consensus 88 ~~vN~~~~Shlv~VP~G~~~LsD 110 (332)
..-.++++.|++.+..-. -|.+
T Consensus 176 ~~~~~~g~~~~~~~~d~~-~L~~ 197 (266)
T 4hqo_A 176 GCRPREPNCKFYSYADWN-EAVA 197 (266)
T ss_dssp TCCTTCSSCTTEECSCHH-HHHH
T ss_pred CCCCCCCCCCeEEecCHH-HHHH
Confidence 321112235777775432 3444
No 11
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=95.93 E-value=0.041 Score=46.53 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=61.5
Q ss_pred cCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC------------
Q 020031 9 IGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD------------ 76 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~------------ 76 (332)
.+|..++..||+.|.-.|+++ + ...|+|+|+.--...+. .+..+++++++.+|.|.+|.||...
T Consensus 88 ~~g~T~l~~al~~a~~~l~~~--~-~~~~~ivllTDG~~~~~-~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~ 163 (218)
T 3ibs_A 88 SKQGTAIGEAINLATRSFTPQ--E-GVGRAIIVITDGENHEG-GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDY 163 (218)
T ss_dssp CSCSCCHHHHHHHHHTTSCSC--S-SCCEEEEEEECCTTCCS-CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCB
T ss_pred CCCCCcHHHHHHHHHHHHhhC--C-CCCcEEEEEcCCCCCCC-cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCce
Confidence 368899999999988777765 2 34455555533222211 5788999999999999999999842
Q ss_pred -----------CCcHHHHHHHHHHHhcCCCceEEEeCCCCc
Q 020031 77 -----------EGNTEKLEALLAAVNNNDSSHLVHVPPGPN 106 (332)
Q Consensus 77 -----------~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~ 106 (332)
.-|...|+.+.+..+ .+++.+.....
T Consensus 164 ~~~~~g~~~~~~~~~~~L~~iA~~~g----G~~~~~~~~~~ 200 (218)
T 3ibs_A 164 RRDREGNVIVTRLNEGMCQEIAKDGK----GIYVRVDNSNS 200 (218)
T ss_dssp CBCTTSCBCEECCCHHHHHHHHHHTE----EEEEEECSSSH
T ss_pred eEcCCCCEeEecCCHHHHHHHHHhcC----CEEEECCCChH
Confidence 246778888876653 34555655333
No 12
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=94.90 E-value=0.098 Score=43.67 Aligned_cols=88 Identities=14% Similarity=0.210 Sum_probs=57.2
Q ss_pred cCccccHHHHHHHHHHHhhhcC---CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHH
Q 020031 9 IGGELNLAAGIQVAQLALKHRQ---NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 85 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRq---nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~ 85 (332)
.+|..++..||+.|.=-|.... .++.+++||+|.-.--.. .+...++.||+.+|.|-.|-||... |.+.|+.
T Consensus 80 ~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~---~~~~~~~~~~~~gi~v~~igvG~~~--~~~~L~~ 154 (189)
T 1atz_A 80 EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD---SVDAAADAARSNRVTVFPIGIGDRY--DAAQLRI 154 (189)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS---CCHHHHHHHHHTTEEEEEEEESSSS--CHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc---hHHHHHHHHHHCCCEEEEEEcCCcC--CHHHHHH
Confidence 4788999999999875555422 122334455554322122 2678899999999999999999865 5566665
Q ss_pred HHHHHhcCCCceEEEeCCC
Q 020031 86 LLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 86 fi~~vN~~~~Shlv~VP~G 104 (332)
+.. .....|+.++..-
T Consensus 155 iA~---~~~~~~~~~~~~~ 170 (189)
T 1atz_A 155 LAG---PAGDSNVVKLQRI 170 (189)
T ss_dssp HTG---GGGGGGCEEESST
T ss_pred HHC---CCcccCEEEecCh
Confidence 532 2234688887643
No 13
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=94.70 E-value=0.063 Score=44.75 Aligned_cols=68 Identities=7% Similarity=0.126 Sum_probs=45.2
Q ss_pred cCccccHHHHHHHHHHHhhhcC--CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 9 IGGELNLAAGIQVAQLALKHRQ--NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRq--nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.+|..++..||+.|.=-|.... .+....++|+++.-=...+...+...+++||+.+|.|-+|-||...
T Consensus 94 ~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~~~ 163 (178)
T 2xgg_A 94 KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGHYV 163 (178)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC---
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 5788999999998875543221 1223445555554333334456889999999999999999999876
No 14
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=94.53 E-value=0.046 Score=45.53 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=57.5
Q ss_pred cCccccHHHHHHHHH-HHhhhcC-CccccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCCC--CcHHHH
Q 020031 9 IGGELNLAAGIQVAQ-LALKHRQ-NKKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEKL 83 (332)
Q Consensus 9 i~G~~~~~~gIqiA~-LALKHRq-nK~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~~--~n~~kL 83 (332)
++|..++..||+.|. -.++.+. .+....|+|+++.-=.. .+...+...+++|++.+|.|-.|-||.... .+...|
T Consensus 82 ~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L 161 (198)
T 1n3y_A 82 LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKEL 161 (198)
T ss_dssp CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHH
T ss_pred CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHH
Confidence 678899999999988 4344321 12234555555532222 233345667889999999999999997651 134555
Q ss_pred HHHHHHHhcCCCceEEEeCCC
Q 020031 84 EALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 84 ~~fi~~vN~~~~Shlv~VP~G 104 (332)
+.+.. ..++.|++.+...
T Consensus 162 ~~iA~---~~~g~~~~~~~~~ 179 (198)
T 1n3y_A 162 NDIAS---KPSQEHIFKVEDF 179 (198)
T ss_dssp HHHSC---SSSGGGEEEESSG
T ss_pred HHHHc---CCCcccEEEeCCH
Confidence 44432 2345677777653
No 15
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=94.47 E-value=0.18 Score=42.90 Aligned_cols=99 Identities=9% Similarity=0.125 Sum_probs=60.7
Q ss_pred cccc-Cc-cccHHHHHHHHHHH-hhhcCCccccceEEEEe-cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHH
Q 020031 6 GLEI-GG-ELNLAAGIQVAQLA-LKHRQNKKQQQRIIVFV-GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 81 (332)
Q Consensus 6 ~i~i-~G-~~~~~~gIqiA~LA-LKHRqnK~~~qRIIvFV-GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~ 81 (332)
.++. +| ..++..||+.|.-. +++...++.++.||+|- |-|-......+...++.||+.+|.|-.|-||... |.+
T Consensus 84 ~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~--~~~ 161 (202)
T 1ijb_A 84 QVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHA--NLK 161 (202)
T ss_dssp TCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTS--CHH
T ss_pred hCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcC--CHH
Confidence 3443 44 38999999988533 34222233344455554 3332222346888999999999999999999754 567
Q ss_pred HHHHHHHHHhcCCCceEEEeCCCCchhhH
Q 020031 82 KLEALLAAVNNNDSSHLVHVPPGPNALSD 110 (332)
Q Consensus 82 kL~~fi~~vN~~~~Shlv~VP~G~~~LsD 110 (332)
.|+.+-.. ..+.|++.+..-. -|.+
T Consensus 162 ~L~~iA~~---~~~~~~~~~~~~~-~L~~ 186 (202)
T 1ijb_A 162 QIRLIEKQ---APENKAFVLSSVD-ELEQ 186 (202)
T ss_dssp HHHHHHHH---CTTCCCEEESSGG-GHHH
T ss_pred HHHHHhCC---CCcccEEEeCCHH-HHHH
Confidence 77776543 2345777776432 3444
No 16
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=93.68 E-value=0.22 Score=42.81 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=59.8
Q ss_pred Cc-cccHHHHHHHHHHH-hhhc-CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCC---cHHHH
Q 020031 10 GG-ELNLAAGIQVAQLA-LKHR-QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEG---NTEKL 83 (332)
Q Consensus 10 ~G-~~~~~~gIqiA~LA-LKHR-qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~---n~~kL 83 (332)
+| ..++..||+.|.=. ++.+ ..+....|+|+++.-=...+...+...+++||+.+|.|-.|-||...+. ...++
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~ 175 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKF 175 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHH
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecCccccccccchhH
Confidence 56 48999999988643 3311 1122344555555432222333578889999999999999999975411 12344
Q ss_pred HHHHHHHhcC-CCceEEEeCCCC
Q 020031 84 EALLAAVNNN-DSSHLVHVPPGP 105 (332)
Q Consensus 84 ~~fi~~vN~~-~~Shlv~VP~G~ 105 (332)
..++..+-+. .+.|++.+....
T Consensus 176 ~~~L~~iA~~p~~g~~~~~~~~~ 198 (223)
T 2b2x_A 176 VEEIKSIASEPTEKHFFNVSDEL 198 (223)
T ss_dssp HHHHHTTSCSSGGGTEEEESSTT
T ss_pred HHHHHHHhCCCchhcEEEeCCHH
Confidence 5666666555 467888887543
No 17
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=93.45 E-value=0.18 Score=53.07 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=66.6
Q ss_pred CccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc---------c----------HH-----------HHHHHHHH
Q 020031 10 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---------E----------KK-----------VLEMIGRK 59 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~---------d----------ek-----------~L~klaKk 59 (332)
.+..-+..||++|..+|+..-. +.--||++|+++|-.. + +| -..+||++
T Consensus 263 ~~~~a~G~Al~~A~~lL~~~~~-~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~ 341 (769)
T 2nut_A 263 RPLRSSGVALSIAVGLLECTFP-NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANR 341 (769)
T ss_dssp CCCCCHHHHHHHHHHHHHHHSC-SSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHhhccc-CCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHH
Confidence 3455688999999999997642 4468999999997531 1 12 14679999
Q ss_pred hhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC-CchhhHHhh
Q 020031 60 LKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG-PNALSDVLL 113 (332)
Q Consensus 60 LKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G-~~~LsD~l~ 113 (332)
+.+++|+|||+.|+... -...-|..+.+.- +-+++..|.- ...+.+.+.
T Consensus 342 ~~~~gi~VDlF~~~~~~-vdla~l~~l~~~T----GG~~~~~~~F~~~~~~~~l~ 391 (769)
T 2nut_A 342 AATTGHVIDIYACALDQ-TGLLEMKCCPNLT----GGYMVMGDSFNTSLFKQTFQ 391 (769)
T ss_dssp HHHHTCEEEEEEECSSC-CCHHHHTHHHHHS----SCCEEEESCSSSHHHHHHHH
T ss_pred HHHCCeEEEEEeccCCc-cChHHHHHHhhcC----CceEEEcCCCchhhHHHHHH
Confidence 99999999999999765 4556666665543 2234444542 223454443
No 18
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=92.92 E-value=0.2 Score=53.00 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=53.7
Q ss_pred CccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc---------c--------HH---------HHHHHHHHhhhc
Q 020031 10 GGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---------E--------KK---------VLEMIGRKLKKN 63 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~---------d--------ek---------~L~klaKkLKKn 63 (332)
.+..-+..||++|..+||+. --||++|+++|-.. + ++ --.+||+++-++
T Consensus 303 ~~~~a~G~AL~~A~~lL~~~-----GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~ 377 (810)
T 1pcx_A 303 ITNFALGPALKSAYHLIGGV-----GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKV 377 (810)
T ss_dssp CCCCCHHHHHHHHHHHHTTT-----CEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHhc-----CCEEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHC
Confidence 34556889999999999963 46999999998421 0 11 137899999999
Q ss_pred cceeeEEEecCCCCCcHHHHHHHHH
Q 020031 64 SVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 64 nVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
+|+|||..|+... -...-|..+..
T Consensus 378 gi~VDlF~~s~~~-~dla~l~~l~~ 401 (810)
T 1pcx_A 378 QITVDLFLASEDY-MDVASLSNLSR 401 (810)
T ss_dssp TEEEEEEEEESSC-CCHHHHHHHHH
T ss_pred CeEEEEEEccCCc-cChHHHHHHHh
Confidence 9999999998765 44455555544
No 19
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=92.92 E-value=0.21 Score=53.84 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=53.8
Q ss_pred ccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc---------c--------cHHH---------HHHHHHHhhhcc
Q 020031 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---------H--------EKKV---------LEMIGRKLKKNS 64 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~---------~--------dek~---------L~klaKkLKKnn 64 (332)
...-+..||++|..+||+. --||++|+++|-. + .++. -.+||+++-+++
T Consensus 420 ~~~~~G~AL~aA~~lL~~~-----GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~g 494 (926)
T 1m2v_B 420 TNFALGPALKSAYHLIGGV-----GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQ 494 (926)
T ss_dssp CCCCHHHHHHHHHHHHTTT-----CEEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHhh-----CCEEEEEecCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHcC
Confidence 3456889999999999974 4699999999832 1 1222 378999999999
Q ss_pred ceeeEEEecCCCCCcHHHHHHHHH
Q 020031 65 VALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 65 VavDII~FGe~~~~n~~kL~~fi~ 88 (332)
|+|||..|+... -...-|..+..
T Consensus 495 isVDlF~~s~~~-vdla~l~~l~~ 517 (926)
T 1m2v_B 495 ITVDLFLASEDY-MDVASLSNLSR 517 (926)
T ss_dssp EEEEEEEEESSC-CCHHHHHHHHH
T ss_pred eEEEEEEccCCC-cChHHHHHHHh
Confidence 999999998755 44455555544
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=92.74 E-value=0.15 Score=42.67 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=57.1
Q ss_pred cccc-cCccccHHHHHHHHHHHh-hhcC-CccccceEEEEe--cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCc
Q 020031 5 AGLE-IGGELNLAAGIQVAQLAL-KHRQ-NKKQQQRIIVFV--GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN 79 (332)
Q Consensus 5 H~i~-i~G~~~~~~gIqiA~LAL-KHRq-nK~~~qRIIvFV--GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n 79 (332)
..+. .+|..++..||+.|.=.| ..+. .+....|+|+++ |-|- .+...+...+++||+.+|.|-.|-||... ++
T Consensus 73 ~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~d~~~~~~~~~~~~~~gi~v~~igvG~~~-~~ 150 (194)
T 1mf7_A 73 KPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-GDPLGYEDVIPEADREGVIRYVIGVGDAF-RS 150 (194)
T ss_dssp TTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-SCSSCGGGTHHHHHHTTEEEEEEEESGGG-CS
T ss_pred HhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-CCchhhHHHHHHHHHCCCEEEEEEecccc-cc
Confidence 3444 478899999999987433 2211 122234555554 3222 12223456678899999999999999765 21
Q ss_pred HHHHHHHHHHHhcCC-CceEEEeCCC
Q 020031 80 TEKLEALLAAVNNND-SSHLVHVPPG 104 (332)
Q Consensus 80 ~~kL~~fi~~vN~~~-~Shlv~VP~G 104 (332)
..-...+..+-+.. +.|++.+..-
T Consensus 151 -~~~~~~L~~iA~~~~~~~~~~~~~~ 175 (194)
T 1mf7_A 151 -EKSRQELNTIASKPPRDHVFQVNNF 175 (194)
T ss_dssp -HHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred -cccHHHHHHHhCCCCcccEEEeCCH
Confidence 22233344454433 3688888753
No 21
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=92.41 E-value=0.11 Score=41.20 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.1
Q ss_pred cCCCCCCHHHHHHHHhcHHHH
Q 020031 146 GVDPNLDPELALALRVSMEEE 166 (332)
Q Consensus 146 GvDP~~DPELAmALR~SmEEE 166 (332)
.++-..|.+|..||.|||+|-
T Consensus 6 ~~~~~eDeDLkrAieLSL~Es 26 (81)
T 1q0v_A 6 STPEDEEELIRKAIELSLKES 26 (81)
T ss_dssp CCCSSHHHHHHHHHHHHHHCC
T ss_pred ccccCchHHHHHHHHHhHHHH
Confidence 466778999999999999984
No 22
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=92.39 E-value=1.1 Score=37.45 Aligned_cols=90 Identities=10% Similarity=0.125 Sum_probs=55.7
Q ss_pred cCccccHHHHHHHHHHHhhhcCCc-----cccceEEEEec--CCCc-ccHHHHHHHH----------HHhhhccceeeEE
Q 020031 9 IGGELNLAAGIQVAQLALKHRQNK-----KQQQRIIVFVG--SPIK-HEKKVLEMIG----------RKLKKNSVALDIV 70 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqnK-----~~~qRIIvFVG--SPi~-~dek~L~kla----------KkLKKnnVavDII 70 (332)
.+|..++..||+.|.-.|+.+... ....|+|+|+. -|-. .+...+.... +.+++.+|.|-.|
T Consensus 96 ~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i 175 (223)
T 1q0p_A 96 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVF 175 (223)
T ss_dssp CTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEE
T ss_pred CCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEE
Confidence 468899999999998888765431 23555555553 3321 1233333333 5568999999999
Q ss_pred EecCCCCCcHHHHHHHHHHHhcCC--CceEEEeCCC
Q 020031 71 NFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPG 104 (332)
Q Consensus 71 ~FGe~~~~n~~kL~~fi~~vN~~~--~Shlv~VP~G 104 (332)
-||... +...|+.+. +.. ..|++.+...
T Consensus 176 gvG~~~--~~~~L~~iA----~~~~G~~~~~~~~~~ 205 (223)
T 1q0p_A 176 GVGPLV--NQVNINALA----SKKDNEQHVFKVKDM 205 (223)
T ss_dssp ECSSCC--CHHHHHHHS----CCCTTCCCEEETTC-
T ss_pred EecCcC--CHHHHHHHh----cCCCCCceEEEcCCH
Confidence 999754 445555443 322 2388888754
No 23
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=92.32 E-value=0.21 Score=42.51 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=62.0
Q ss_pred Cc-cccHHHHHHHHHHH-hhhc-CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC---CcHHHH
Q 020031 10 GG-ELNLAAGIQVAQLA-LKHR-QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE---GNTEKL 83 (332)
Q Consensus 10 ~G-~~~~~~gIqiA~LA-LKHR-qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~---~n~~kL 83 (332)
+| ..++..||+.|.=- ++.+ ..+....|+|+++--=...+...+...+++||+.+|.|-.|-||...+ -+..++
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~ 160 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKF 160 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHH
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccchhh
Confidence 56 48999999988643 3311 112234455555533222233467889999999999999999996430 112445
Q ss_pred HHHHHHHhcC-CCceEEEeCCCCchhhHH
Q 020031 84 EALLAAVNNN-DSSHLVHVPPGPNALSDV 111 (332)
Q Consensus 84 ~~fi~~vN~~-~~Shlv~VP~G~~~LsD~ 111 (332)
..++..+-+. .+.|++.++... -|.++
T Consensus 161 ~~~L~~iA~~~~~g~~~~~~~~~-~l~~i 188 (213)
T 1pt6_A 161 VEEIKSIASEPTEKHFFNVSDEL-ALVTI 188 (213)
T ss_dssp HHHHHHHSCSSHHHHEEEESSGG-GGGGG
T ss_pred HHHHHHHhCCCchhcEEEeCCHH-HHHHH
Confidence 5666777555 357888887543 34443
No 24
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=92.31 E-value=0.54 Score=49.40 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=59.4
Q ss_pred ccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc---------c----------HH-----------HHHHHHHHh
Q 020031 11 GELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---------E----------KK-----------VLEMIGRKL 60 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~---------d----------ek-----------~L~klaKkL 60 (332)
...-+..||++|..+|+.+- ++.--||++|+++|-.. + +| -..+||+++
T Consensus 258 ~~~~~G~Al~~A~~ll~~~~-~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~ 336 (768)
T 1m2o_A 258 PLRATGSALNIASLLLQGCY-KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRV 336 (768)
T ss_dssp CCCCHHHHHHHHHHHHHHHC-TTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhhcc-CCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHH
Confidence 44568899999999999764 34468999999998531 1 11 237899999
Q ss_pred hhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 61 KKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 61 KKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
-+++|+|||..|+... --..-|..+...-
T Consensus 337 ~~~gi~VDlF~~~~~~-~dla~l~~l~~~T 365 (768)
T 1m2o_A 337 AANGHTVDIFAGCYDQ-IGMSEMKQLTDST 365 (768)
T ss_dssp HHHTCEEEEEEECSSC-CSHHHHHHHHHHH
T ss_pred HHCCeEEEEEEccCCc-cChHHHhhHhhcC
Confidence 9999999999999765 4566677766655
No 25
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=92.30 E-value=0.086 Score=41.92 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=33.4
Q ss_pred CCchhHHHHHHHhcCCCCCCC----C--CC------C-CCCCCCCChHHHHHHHHhcccCCC
Q 020031 218 KHDEGLLQEAIAMSSTPSYPS----G--RD------T-NMSEVAEDDPELALALQLSMQDGT 266 (332)
Q Consensus 218 ~~ed~~L~qALamS~~~~~~~----~--~d------~-~~~~~~~Eee~ia~AlqmSmq~~~ 266 (332)
.++|+.|++||.||+.+.... . +. . .-..+.+||++|..||+-||.+.+
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 567899999999999643211 0 10 1 112346789999999999998643
No 26
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=92.12 E-value=0.26 Score=51.94 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecC-CCcc-------------------------cHHHHHHHHHHhhhccce
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-PIKH-------------------------EKKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS-Pi~~-------------------------dek~L~klaKkLKKnnVa 66 (332)
.-+..+|+.|.++||+. +.--||++|+++ |... ..+-..+||+++-+++|+
T Consensus 289 t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~ 365 (766)
T 3eh2_A 289 TVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCC 365 (766)
T ss_dssp CCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEE
T ss_pred chHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeE
Confidence 34788999999999985 347899999999 8730 113458999999999999
Q ss_pred eeEEEecCCCCCcHHHHHHHHH
Q 020031 67 LDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 67 vDII~FGe~~~~n~~kL~~fi~ 88 (332)
|||..|+... -...-|..+..
T Consensus 366 VDlF~~s~~~-vdlatl~~l~~ 386 (766)
T 3eh2_A 366 VDLFLFPNQY-VDVATLSVVPQ 386 (766)
T ss_dssp EEEEECCSSC-CCHHHHTHHHH
T ss_pred EEEEEecCCC-cChHHHHHHHh
Confidence 9999998654 33344444333
No 27
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=92.04 E-value=0.15 Score=43.85 Aligned_cols=90 Identities=22% Similarity=0.263 Sum_probs=45.8
Q ss_pred CCCCCCcccCCCCCCHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcc----cccccCCCCCCCcccc
Q 020031 138 SGASGYEFGVDPNLDPELALALRVS--MEEERARQEAAAKRAAEEAAKKEKQGEQQSSSQ----DVTMTDQDSVPASEAD 211 (332)
Q Consensus 138 ~~~~~fefGvDP~~DPELAmALR~S--mEEEr~RQe~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 211 (332)
+-..+++-.+||++==-|.|-|.-- ..|..+|+..+...+....+ ..+......+ ...++... ++.
T Consensus 29 ~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~saa~~~~a---~~~~~~~eeamL~~a~~~~~~~-----~~~ 100 (132)
T 1yx4_A 29 DFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIA---TTGTEDSDDALLKMTISQQEFG-----RTG 100 (132)
T ss_dssp SCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS---CCCCCSCHHHHHHHHHHHHHHH-----HSS
T ss_pred ccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccc---ccCCcccHHHHHHHhhcccccC-----CCC
Confidence 3456799899999999999998433 33334444333322211111 0110000000 00000000 000
Q ss_pred cccccCCCchhHHHHHHHhcCCCC
Q 020031 212 DKKKTTKHDEGLLQEAIAMSSTPS 235 (332)
Q Consensus 212 ~~~~~~~~ed~~L~qALamS~~~~ 235 (332)
..+..+|.||++|++||.|||++.
T Consensus 101 ~~d~~~MtEEeqLa~ALqMSMQe~ 124 (132)
T 1yx4_A 101 LPDLSSMTEEEQIAYAMQMSLQGA 124 (132)
T ss_dssp CCCSTTSCHHHHHHHHHHHSSSSC
T ss_pred CCchhhCChHHHHHHHHHhccccc
Confidence 112346889999999999999864
No 28
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=91.68 E-value=0.58 Score=38.21 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=57.4
Q ss_pred ccCccccHHHHHHHHHHHhhhc--CCccccceEEEEecCCCccc--HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKHR--QNKKQQQRIIVFVGSPIKHE--KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKL 83 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKHR--qnK~~~qRIIvFVGSPi~~d--ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL 83 (332)
.++|..++..||+.|.-.|.++ ...+ ..|+|+++.-=...+ .......+++|++.+|.|-.|-|| . .|...|
T Consensus 78 ~~~g~T~~~~al~~a~~~l~~~~~~~~~-~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg--~-~~~~~L 153 (185)
T 3n2n_F 78 LPGGDTYMHEGFERASEQIYYENRQGYR-TASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK--D-FNETQL 153 (185)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHTTCBC-EEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS--S-CCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHhhccccCCC-CCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec--c-CCHHHH
Confidence 4688999999999988766332 2222 455555553222222 224578999999999999999999 2 456666
Q ss_pred HHHHHHHhcCCCceEEEeCC
Q 020031 84 EALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 84 ~~fi~~vN~~~~Shlv~VP~ 103 (332)
+.+- + ...|++.+..
T Consensus 154 ~~iA----~-~~~~~~~~~~ 168 (185)
T 3n2n_F 154 ARIA----D-SKDHVFPVND 168 (185)
T ss_dssp TTTS----S-SGGGEEEHHH
T ss_pred HHHh----C-CCCCeEEecc
Confidence 5543 2 3467777764
No 29
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=91.65 E-value=2.7 Score=33.16 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=38.3
Q ss_pred CceEEEeCC---C-CchhhHHhhhc--CcccCCCCCCCchhHhHHhhhcCCCCCCcccCCCCCCHHHHHHHHhcHHHHHH
Q 020031 95 SSHLVHVPP---G-PNALSDVLLST--PIFTGDGEGGSGFAAAAAAAAASGASGYEFGVDPNLDPELALALRVSMEEERA 168 (332)
Q Consensus 95 ~Shlv~VP~---G-~~~LsD~l~sS--pI~~ge~~~g~~~~~~~~~~~~~~~~~fefGvDP~~DPELAmALR~SmEEEr~ 168 (332)
.|+++..|. | +..+.+++..- ||+..... ++.. .--..+ .+.++|..--+|+-+|+--+.....
T Consensus 74 ~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~--~~~~------~~~~~~--~~~~~~~~~~~l~~~i~~l~~~~~~ 143 (166)
T 3qhp_A 74 TCTLYVHAANVESEAIACLEAISVGIVPVIANSPL--SATR------QFALDE--RSLFEPNNAKDLSAKIDWWLENKLE 143 (166)
T ss_dssp TCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTT--CGGG------GGCSSG--GGEECTTCHHHHHHHHHHHHHCHHH
T ss_pred hCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCC--Cchh------hhccCC--ceEEcCCCHHHHHHHHHHHHhCHHH
Confidence 467777775 2 55677877776 88773321 1110 000111 1246777777899999887775544
Q ss_pred HHH
Q 020031 169 RQE 171 (332)
Q Consensus 169 RQe 171 (332)
|++
T Consensus 144 ~~~ 146 (166)
T 3qhp_A 144 RER 146 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 30
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=91.47 E-value=0.32 Score=51.22 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecC-CCcc-------------------------cHHHHHHHHHHhhhccce
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS-PIKH-------------------------EKKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS-Pi~~-------------------------dek~L~klaKkLKKnnVa 66 (332)
.-|..+|+.|.++||+.. .--||++|+++ |... ..+-..+||+++-+++|+
T Consensus 293 t~~g~al~aa~~~l~~~~---~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~ 369 (770)
T 3efo_B 293 TVFAPVIQAGMEALKAAD---CPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCS 369 (770)
T ss_dssp CCCHHHHHHHHHHHHHHT---CCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEE
T ss_pred chHHHHHHHHHHHhccCC---CCcEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeE
Confidence 347789999999999842 35699999999 8721 112347899999999999
Q ss_pred eeEEEecCCCCCcHHHHHHHHH
Q 020031 67 LDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 67 vDII~FGe~~~~n~~kL~~fi~ 88 (332)
|||..|+... -...-|..+..
T Consensus 370 VDlF~~s~~~-vdlatl~~l~~ 390 (770)
T 3efo_B 370 VTLFLFPSQY-VDVASLGLVPQ 390 (770)
T ss_dssp EEEEECCSSC-CCHHHHTHHHH
T ss_pred EEEEEecCCc-cChHHHHHHHh
Confidence 9999998654 33344444433
No 31
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=90.28 E-value=0.48 Score=49.85 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc---------c----------------cHHHHHHHHHHhhhcccee
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK---------H----------------EKKVLEMIGRKLKKNSVAL 67 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~---------~----------------dek~L~klaKkLKKnnVav 67 (332)
.-+..||++|..+||+. --||++|+++|-. + ..+-..+||+++-+++|+|
T Consensus 271 ~~~G~AL~aA~~ll~~~-----GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~V 345 (751)
T 3eh1_A 271 SALGPALQAAFKLMSPT-----GGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAV 345 (751)
T ss_dssp CCHHHHHHHHHHHHTTT-----CEEEEEEECSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEE
T ss_pred cchHHHHHHHHHHhhcC-----CCEEEEEecCCCCCCCCccccccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceE
Confidence 45778999999999863 5699999998643 1 1123589999999999999
Q ss_pred eEEEecCCC
Q 020031 68 DIVNFGEDD 76 (332)
Q Consensus 68 DII~FGe~~ 76 (332)
||..|+...
T Consensus 346 DlF~~s~~~ 354 (751)
T 3eh1_A 346 DLFLLSSQY 354 (751)
T ss_dssp EEEECCSSC
T ss_pred EEEEccCcc
Confidence 999998654
No 32
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=88.27 E-value=0.44 Score=33.75 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHhcHHH
Q 020031 150 NLDPELALALRVSMEE 165 (332)
Q Consensus 150 ~~DPELAmALR~SmEE 165 (332)
...-.||||||||-+|
T Consensus 5 tEEEq~ALA~rmSeQE 20 (45)
T 3a1q_C 5 SEEEQFALALKMSEQE 20 (45)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHH
Confidence 3345689999998444
No 33
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=88.18 E-value=2.3 Score=35.59 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=58.9
Q ss_pred cccc-Cc-cccHHHHHHHHHHH-hhhcC-CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC---CCC
Q 020031 6 GLEI-GG-ELNLAAGIQVAQLA-LKHRQ-NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED---DEG 78 (332)
Q Consensus 6 ~i~i-~G-~~~~~~gIqiA~LA-LKHRq-nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~---~~~ 78 (332)
.+.. +| ..++..||+.|.=. ++... .+....|+|+++--=...+...+...+++||+.+|.|-.|-||.. ..-
T Consensus 75 ~l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~ 154 (200)
T 1v7p_C 75 QTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNAL 154 (200)
T ss_dssp HCCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTC
T ss_pred hhhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEeccccccccc
Confidence 3443 45 58999999988643 43211 122344455554322222334466789999999999999999531 102
Q ss_pred cHHHHHHHHHHHhcCC-CceEEEeCCCCchhhHH
Q 020031 79 NTEKLEALLAAVNNND-SSHLVHVPPGPNALSDV 111 (332)
Q Consensus 79 n~~kL~~fi~~vN~~~-~Shlv~VP~G~~~LsD~ 111 (332)
+..++...+..+-+.. +.|+..+.... -|.++
T Consensus 155 ~~~~~~~~L~~iA~~~~g~~~~~~~~~~-~l~~i 187 (200)
T 1v7p_C 155 DTKNLIKEIKAIASIPTERYFFNVSDEA-ALLEK 187 (200)
T ss_dssp CCHHHHHHHHHHSCSSHHHHEEEESSSG-GGHHH
T ss_pred chhhHHHHHHHHhCCccHhcEEEcCCHH-HHHHH
Confidence 2234444455554443 46777776533 34443
No 34
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=86.91 E-value=0.7 Score=32.88 Aligned_cols=15 Identities=47% Similarity=0.534 Sum_probs=11.7
Q ss_pred CchhHHHHHHHhcCC
Q 020031 219 HDEGLLQEAIAMSST 233 (332)
Q Consensus 219 ~ed~~L~qALamS~~ 233 (332)
.||.+|++|++-|+.
T Consensus 27 ~E~~llrKAIaESLn 41 (46)
T 2rr9_C 27 EEEELLRKAIAESLN 41 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367899999988763
No 35
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=86.06 E-value=0.22 Score=35.41 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHhcccCC
Q 020031 248 AEDDPELALALQLSMQDG 265 (332)
Q Consensus 248 ~~Eee~ia~AlqmSmq~~ 265 (332)
|||++++|.||.||-|+.
T Consensus 1 MtEEEq~ALA~kmSeQEA 18 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQEA 18 (46)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHHHH
Confidence 799999999999999863
No 36
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=84.92 E-value=0.21 Score=35.36 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=17.0
Q ss_pred CCCChHHHHHHHHhcccCC
Q 020031 247 VAEDDPELALALQLSMQDG 265 (332)
Q Consensus 247 ~~~Eee~ia~AlqmSmq~~ 265 (332)
.|||++++|.||.||-|+.
T Consensus 3 ~mtEEEq~ALA~rmSeQEA 21 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQEA 21 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHHHH
Confidence 6899999999999999863
No 37
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=84.22 E-value=0.026 Score=46.93 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=48.4
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEe--cCCCcc-c--------HHHHHHHHHHhhhccceeeEEEe
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV--GSPIKH-E--------KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV--GSPi~~-d--------ek~L~klaKkLKKnnVavDII~F 72 (332)
|..+.++|..++..||+.|.-.|+++..+..+ |+|+|+ |.|-.. + ..++..+++++++++|.|-+|-|
T Consensus 71 i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~-~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~ 149 (189)
T 2x31_A 71 LQGLPGGGGTPLASGMEMAMVTAKQARSRGMT-PTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDT 149 (189)
T ss_dssp HHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSS-EEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHH
T ss_pred HhcCCCCCCCCHHHHHHHHHHHHHhccCCCCc-eEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEec
Confidence 34567889999999999998888776555444 445554 444321 1 22455678889999988888888
Q ss_pred cCC
Q 020031 73 GED 75 (332)
Q Consensus 73 Ge~ 75 (332)
|..
T Consensus 150 g~~ 152 (189)
T 2x31_A 150 AMR 152 (189)
T ss_dssp HHS
T ss_pred CCC
Confidence 754
No 38
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=83.52 E-value=2.3 Score=35.28 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=36.6
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|+|+++.+|+-..+++-...|++.|++.+|.|+++.+.+..
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~ 41 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVD 41 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence 58999999998889999999999999999999999987655
No 39
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=83.37 E-value=7.7 Score=38.11 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=52.8
Q ss_pred CcccccCccccHHHHHHHHHHHhhhcCCccccceEEEEe--cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHH
Q 020031 4 DAGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFV--GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTE 81 (332)
Q Consensus 4 lH~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFV--GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~ 81 (332)
|..++++|..++..||+.|.=.|+.|.+ +.|+|+|+ |-|-..+...+....+ ..+.+|.|..|-||... |..
T Consensus 151 I~~L~~~GgT~l~~aL~~A~~~l~~~~~---~~~~IILLTDG~~~~~~~~~l~~~~~-a~~~~i~i~tiGiG~~~--d~~ 224 (464)
T 4fx5_A 151 VGRLHANGGTAMGRWLAQAGRIFDTAPS---AIKHAILLTDGKDESETPADLARAIQ-SSIGNFTADCRGIGEDW--EPK 224 (464)
T ss_dssp HHTCCCCSCCCHHHHHHHHHHHHTTCTT---SEEEEEEEESSCCTTSCHHHHHHHHH-HHTTTCEEEEEEESSSS--CHH
T ss_pred HHcCCCCCCCcHHHHHHHHHHHHhcCCC---CCCEEEEEcCCCCCCCChHHHHHHHH-HhcCCCeEEEEEeCCcc--CHH
Confidence 3456788999999999999988887542 34555555 4443334444444333 34678999999999754 456
Q ss_pred HHHHHHHH
Q 020031 82 KLEALLAA 89 (332)
Q Consensus 82 kL~~fi~~ 89 (332)
.|+.+-+.
T Consensus 225 ~L~~IA~~ 232 (464)
T 4fx5_A 225 ELRKIADA 232 (464)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666543
No 40
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=83.33 E-value=3.6 Score=34.24 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=38.4
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
..++|+++-+||-..+++-...|++.|++.++.|+++.+.+.
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 467899999999989999999999999999999999998866
No 41
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=83.33 E-value=12 Score=33.75 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=69.6
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
....+|+|||.-... .-..|++..++|++. ..+.++.+|... ..+.|+.++...+-.+ ++..+++.. -+.+.+
T Consensus 209 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~--~~~~l~~~~~~~~l~~--~v~~~g~~~-~~~~~~ 282 (394)
T 2jjm_A 209 ESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGP--EFCTILQLVKNLHIED--RVLFLGKQD-NVAELL 282 (394)
T ss_dssp ---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCT--THHHHHHHHHTTTCGG--GBCCCBSCS-CTHHHH
T ss_pred CCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEECCch--HHHHHHHHHHHcCCCC--eEEEeCchh-hHHHHH
Confidence 345789999987643 567788888998876 456888889654 3577888887654222 222233322 255555
Q ss_pred hhcCccc----CCCCCCCchhHhHHhh-----hcCCCCC------CcccCCCCCCHHHHHHHHhcHHHHHHHH
Q 020031 113 LSTPIFT----GDGEGGSGFAAAAAAA-----AASGASG------YEFGVDPNLDPELALALRVSMEEERARQ 170 (332)
Q Consensus 113 ~sSpI~~----ge~~~g~~~~~~~~~~-----~~~~~~~------fefGvDP~~DPELAmALR~SmEEEr~RQ 170 (332)
-.+-|+. .|+.+..-..+...|. ..++... ..|=|+|..-.+|+-||+--++....|+
T Consensus 283 ~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~ 355 (394)
T 2jjm_A 283 AMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHR 355 (394)
T ss_dssp HTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHH
T ss_pred HhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHH
Confidence 5555543 2332111111111111 0011001 1122566666779999987776554443
No 42
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=82.94 E-value=0.5 Score=34.54 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHhcCCCCC
Q 020031 218 KHDEGLLQEAIAMSSTPSY 236 (332)
Q Consensus 218 ~~ed~~L~qALamS~~~~~ 236 (332)
++|++-|++|+.|||+..+
T Consensus 24 EDeeadLrrAiqLSmQGss 42 (52)
T 2klz_A 24 EDEEADLRRAIQLSMQGSS 42 (52)
T ss_dssp SSSHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHhhccc
Confidence 4568899999999998764
No 43
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=82.91 E-value=10 Score=33.77 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=40.1
Q ss_pred ceEEEEecCC-Cc-ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGSP-IK-HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGSP-i~-~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
..+|+|||.- .. -.-..|++..++|++.+-.+.++.+|... . +.|+.++...
T Consensus 208 ~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~-~--~~l~~~~~~~ 261 (406)
T 2gek_A 208 GRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGD-E--DELREQAGDL 261 (406)
T ss_dssp SCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSC-H--HHHHHHTGGG
T ss_pred CeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCc-H--HHHHHHHHhc
Confidence 4689999987 44 35678899999999887778889999866 3 6777776554
No 44
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=81.69 E-value=8.6 Score=34.89 Aligned_cols=86 Identities=12% Similarity=0.053 Sum_probs=55.8
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCC---cHHHHHHHHHHHhcCCCceEEE-eCCCC-c
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEG---NTEKLEALLAAVNNNDSSHLVH-VPPGP-N 106 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~---n~~kL~~fi~~vN~~~~Shlv~-VP~G~-~ 106 (332)
.....+|+|||.-... .-..|++..++|++..-.+.++.+|..... ..+.|+.+++..+..++-||+- +++-+ .
T Consensus 228 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~ 307 (416)
T 2x6q_A 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAR 307 (416)
T ss_dssp CTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHH
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHH
Confidence 3456789999975443 567789999999887666778888876521 2467888888886555656654 33322 1
Q ss_pred hhhHHhhhcCcc
Q 020031 107 ALSDVLLSTPIF 118 (332)
Q Consensus 107 ~LsD~l~sSpI~ 118 (332)
-+.+.+-.+-|+
T Consensus 308 ~~~~~~~~ad~~ 319 (416)
T 2x6q_A 308 EVNAFQRASDVI 319 (416)
T ss_dssp HHHHHHHHCSEE
T ss_pred HHHHHHHhCCEE
Confidence 255555555443
No 45
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=80.20 E-value=2 Score=34.18 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=36.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+||+++.||+-..+++-...|++.|+..++.|+++.+-+..
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~ 41 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVE 41 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCC
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCC
Confidence 58999999998888888999999999999999999886543
No 46
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=79.92 E-value=7.5 Score=31.42 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=38.8
Q ss_pred eEEEEecCCC-c-ccHHHHHHHHHHhh--hccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFVGSPI-K-HEKKVLEMIGRKLK--KNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFVGSPi-~-~dek~L~klaKkLK--KnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
.+|+|+|..- . -.-..|++..++|+ +.+-.+.++.+|.......+.|+.++...
T Consensus 37 ~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~ 94 (200)
T 2bfw_A 37 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKH 94 (200)
T ss_dssp EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHC
T ss_pred CEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhc
Confidence 4888999966 3 35677899999997 66667888888874411356677777765
No 47
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=79.47 E-value=2.3 Score=35.32 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=35.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
++|+++.|||-..+++-...+++.|++.++.|++|...+.
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 3899999999667888889999999999999999998764
No 48
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=79.34 E-value=12 Score=32.99 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=40.4
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHH
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 87 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi 87 (332)
.....+|+|||+-... .-..|++..++|++..-.+.++.+|... ..+.|+.++
T Consensus 195 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~ 248 (394)
T 3okp_A 195 TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGR--YESTLRRLA 248 (394)
T ss_dssp CTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCT--THHHHHHHT
T ss_pred CcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCch--HHHHHHHHH
Confidence 3455889999996543 5678899999998887777888888754 457777777
No 49
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=79.22 E-value=23 Score=31.07 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=51.2
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhc-cceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHH
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 111 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKn-nVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~ 111 (332)
....+|+|||+-... .-..|++..++|++. .-.+-++.+|... .+.|+.++...+-.+ ++..+.+-. -+.+.
T Consensus 194 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~---~~~~~~~~~~~~~~~--~v~~~g~~~-~~~~~ 267 (374)
T 2iw1_A 194 EQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK---PRKFEALAEKLGVRS--NVHFFSGRN-DVSEL 267 (374)
T ss_dssp TTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC---CHHHHHHHHHHTCGG--GEEEESCCS-CHHHH
T ss_pred CCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC---HHHHHHHHHHcCCCC--cEEECCCcc-cHHHH
Confidence 456799999986543 567788888888876 4456777788754 267888888774323 333333322 35666
Q ss_pred hhhcCcc
Q 020031 112 LLSTPIF 118 (332)
Q Consensus 112 l~sSpI~ 118 (332)
+..+-|+
T Consensus 268 ~~~ad~~ 274 (374)
T 2iw1_A 268 MAAADLL 274 (374)
T ss_dssp HHHCSEE
T ss_pred HHhcCEE
Confidence 6665554
No 50
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=78.68 E-value=2.7 Score=35.61 Aligned_cols=41 Identities=5% Similarity=0.060 Sum_probs=36.0
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
.++|+++.|||-..+++-+..+++.|++.++.|++|...+.
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 36899999999666788889999999999999999998874
No 51
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=78.28 E-value=0.94 Score=45.51 Aligned_cols=91 Identities=12% Similarity=0.183 Sum_probs=55.3
Q ss_pred cCccccHHHHHHHHHHHhh-----hcCCccccceEEEEe--cCCCc-ccHHH----------HHHHHHHhhhccceeeEE
Q 020031 9 IGGELNLAAGIQVAQLALK-----HRQNKKQQQRIIVFV--GSPIK-HEKKV----------LEMIGRKLKKNSVALDIV 70 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALK-----HRqnK~~~qRIIvFV--GSPi~-~dek~----------L~klaKkLKKnnVavDII 70 (332)
.+|..++..||+.|.=.|. .|.......|+||++ |-+-. .+... +...++.+|+.+|.|-+|
T Consensus 324 ~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~i 403 (741)
T 3hrz_D 324 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVF 403 (741)
T ss_dssp SSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCeeEEEE
Confidence 6889999999999887662 222333345566655 32211 11111 123556889999999999
Q ss_pred EecCCCCCcHHHHHHHHHHHhcCCC-ceEEEeCCC
Q 020031 71 NFGEDDEGNTEKLEALLAAVNNNDS-SHLVHVPPG 104 (332)
Q Consensus 71 ~FGe~~~~n~~kL~~fi~~vN~~~~-Shlv~VP~G 104 (332)
-||... |...|+.+... .++ .|+..+..-
T Consensus 404 gvG~~~--~~~~L~~ia~~---~~g~~~~~~~~~~ 433 (741)
T 3hrz_D 404 GVGPLV--NQVNINALASK---KDNEQHVFKVKDM 433 (741)
T ss_dssp ECSSSC--CHHHHHHHSCC---CTTCCCEECBSSH
T ss_pred eCCCcC--CHHHHHHHhcC---CCCcceEEEeCCH
Confidence 999744 55556555332 233 388888763
No 52
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=77.18 E-value=3.3 Score=34.31 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=36.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhh-ccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKK-nnVavDII~FGe~~ 76 (332)
++|+++.|||-..+++-...+++.|++ .++.|++|...+..
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~ 43 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETM 43 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCS
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccC
Confidence 489999999877788888999999999 89999999998763
No 53
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=76.75 E-value=3.2 Score=33.13 Aligned_cols=41 Identities=7% Similarity=0.299 Sum_probs=36.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
++|+|+.+|+-..+++-...|++.|++.++.|+++.+.+..
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~ 42 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADAS 42 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCC
Confidence 48999999998888998999999999999999999987654
No 54
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=73.53 E-value=3.9 Score=34.66 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=41.9
Q ss_pred ceEEEEecCCCc--ccHHHHHHHHHH-hhhccceeeEEEecCCCC-------CcHHHHHHHHHHHhc
Q 020031 36 QRIIVFVGSPIK--HEKKVLEMIGRK-LKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVNN 92 (332)
Q Consensus 36 qRIIvFVGSPi~--~dek~L~klaKk-LKKnnVavDII~FGe~~~-------~n~~kL~~fi~~vN~ 92 (332)
++|++|.|||-. .+++-+..+++. |+..++.|++|...+... ...+.+..+++.+..
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~ 69 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCN 69 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHH
Confidence 589999999963 467777788899 998899999999876420 012456677777753
No 55
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=73.08 E-value=5.3 Score=33.51 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=35.0
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhh-ccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKK-nnVavDII~FGe~ 75 (332)
-++|+++.||+-..+++-...|++.|++ .++.|+++...+.
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 3689999999877788888999999999 8898888887654
No 56
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=72.75 E-value=4.7 Score=35.06 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=41.6
Q ss_pred cCCccccceEEEEecCCCcc--cHHHHHHHHH----Hhhhc--cceeeEEEecCCCC---------CcHHHHHHHHHHHh
Q 020031 29 RQNKKQQQRIIVFVGSPIKH--EKKVLEMIGR----KLKKN--SVALDIVNFGEDDE---------GNTEKLEALLAAVN 91 (332)
Q Consensus 29 RqnK~~~qRIIvFVGSPi~~--dek~L~klaK----kLKKn--nVavDII~FGe~~~---------~n~~kL~~fi~~vN 91 (332)
.-...+-.||++|+|||-.. +..-+..+++ .|++. ++.|.+|..++..- ...+.+..|++.+.
T Consensus 5 ~~~~~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~ 84 (191)
T 3k1y_A 5 HHHHSHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALS 84 (191)
T ss_dssp ----CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHH
T ss_pred ccchhhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHH
Confidence 33455667999999999975 4444456666 67776 79999999876430 11356677777774
Q ss_pred c
Q 020031 92 N 92 (332)
Q Consensus 92 ~ 92 (332)
.
T Consensus 85 ~ 85 (191)
T 3k1y_A 85 A 85 (191)
T ss_dssp H
T ss_pred H
Confidence 3
No 57
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=71.81 E-value=20 Score=32.85 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=48.1
Q ss_pred HHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 20 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 20 qiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
++....++++.. ...++|+++.+|+-..+++-...+++.|++.++.|+++...+.. +..|.+.+.
T Consensus 242 ~~~~~~~~~~~~-~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~------~~~~~~~l~ 306 (404)
T 2ohh_A 242 KIIEAYTGWATG-MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDD------RSEIVKDIL 306 (404)
T ss_dssp HHHHHHHHHHTT-CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSC------HHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC------HHHHHHHHH
Confidence 344445555431 23578999999998889999999999999999999999887654 345566664
No 58
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=71.34 E-value=10 Score=33.89 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=41.0
Q ss_pred eEEEEecCCC-c-ccHHHHHHHHHHhhhcc--ceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGSPI-K-HEKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGSPi-~-~dek~L~klaKkLKKnn--VavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.+|+|||+-. . -.-..|++..++|++.. -.+.++..|.....-.+.|+.++...+
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~ 310 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG 310 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC
Confidence 8999999976 4 36788999999999866 677888889765222266777776653
No 59
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=71.15 E-value=4.7 Score=38.67 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=55.1
Q ss_pred ccccHHHHHHHHHHHhhhcCCcc--------ccceEEEEecC--CCc-ccHHHHHHHHHHh------hhccceeeEEEec
Q 020031 11 GELNLAAGIQVAQLALKHRQNKK--------QQQRIIVFVGS--PIK-HEKKVLEMIGRKL------KKNSVALDIVNFG 73 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHRqnK~--------~~qRIIvFVGS--Pi~-~dek~L~klaKkL------KKnnVavDII~FG 73 (332)
|..++..||+.|.=.|+.+..+. ...|+|+++-- +-. .+...+.+..+.+ ++.+|.|-.|-||
T Consensus 92 ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG 171 (509)
T 2odp_A 92 TGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVG 171 (509)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEES
T ss_pred CCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEEEEEEcC
Confidence 77899999999876665533211 24466666532 221 2333444444433 2888999999999
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 74 EDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 74 e~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
... .|...|+.+-.. .++..|++.+...
T Consensus 172 ~~~-~~~~~L~~iA~~--~~G~~~~~~~~~~ 199 (509)
T 2odp_A 172 KLD-VDWRELNELGSK--KDGERHAFILQDT 199 (509)
T ss_dssp SSC-CCHHHHHHHSCC--CTTCCCEEEESSH
T ss_pred CCc-ccHHHHHhhccC--CCCceeeEEecCH
Confidence 863 366667666432 2334589888764
No 60
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=70.95 E-value=10 Score=34.48 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=49.5
Q ss_pred ccceEEEEecCCCcc-cHHHHHHHHHHhhhcc--ceeeEEEecCCC--CCcHHHHHHHHHHHhcCCCceEEEeCCCCchh
Q 020031 34 QQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS--VALDIVNFGEDD--EGNTEKLEALLAAVNNNDSSHLVHVPPGPNAL 108 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~-dek~L~klaKkLKKnn--VavDII~FGe~~--~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~L 108 (332)
....+|+|||+-... .-..|++..++|++.. ..+.++.+|... ....+.|+.++...+-.++-+|+---+.. -+
T Consensus 241 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~-~~ 319 (438)
T 3c48_A 241 LHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPS-EL 319 (438)
T ss_dssp SSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHH-HH
T ss_pred CCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChH-HH
Confidence 356789999986543 5677889999998763 367788888732 12356788888876544443333211111 24
Q ss_pred hHHhhhcCcc
Q 020031 109 SDVLLSTPIF 118 (332)
Q Consensus 109 sD~l~sSpI~ 118 (332)
.+.+-.+-|+
T Consensus 320 ~~~~~~adv~ 329 (438)
T 3c48_A 320 VAVYRAADIV 329 (438)
T ss_dssp HHHHHHCSEE
T ss_pred HHHHHhCCEE
Confidence 4555444443
No 61
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=69.52 E-value=17 Score=34.44 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=55.9
Q ss_pred cCccccHHHHHHHHHHHhhhcCC-----ccccceEEEEecCCCcc---cHHHHHHHHHH----------hhhccceeeEE
Q 020031 9 IGGELNLAAGIQVAQLALKHRQN-----KKQQQRIIVFVGSPIKH---EKKVLEMIGRK----------LKKNSVALDIV 70 (332)
Q Consensus 9 i~G~~~~~~gIqiA~LALKHRqn-----K~~~qRIIvFVGSPi~~---dek~L~klaKk----------LKKnnVavDII 70 (332)
.+|..++..||+.|.-.|..+.. .....|+|+++.-=... +.......++. +++.+|.|-+|
T Consensus 82 ~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~i 161 (497)
T 1rrk_A 82 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVF 161 (497)
T ss_dssp CTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEE
T ss_pred ccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEEe
Confidence 45789999999999877754432 12345555555432211 33333333333 36669999999
Q ss_pred EecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 71 NFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 71 ~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
-+|... +...|+.+-..- ++..|++.+.... -|.+++
T Consensus 162 gvG~~~--~~~~L~~iA~~~--~g~~~~~~~~~~~-~l~~~~ 198 (497)
T 1rrk_A 162 GVGPLV--NQVNINALASKK--DNEQHVCKVKDME-CLEDVF 198 (497)
T ss_dssp ECSSSC--CHHHHHHHSCCC--TTCCCEEETTCHH-HHHHHH
T ss_pred cCCCcc--CHHHHHHHhcCC--CCcceEEEeCCHH-HHhhhh
Confidence 999755 455565553221 1223888887532 344444
No 62
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=66.01 E-value=1.4 Score=31.19 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.9
Q ss_pred CCCchhHHHHHHHhcCCCC
Q 020031 217 TKHDEGLLQEAIAMSSTPS 235 (332)
Q Consensus 217 ~~~ed~~L~qALamS~~~~ 235 (332)
.+.+++.|+.||.|||+..
T Consensus 18 ~mteeeqla~ALqMSmq~~ 36 (45)
T 1p9c_A 18 SMTEEEQIAYAMQMSLQGA 36 (45)
T ss_dssp HHHHHHHHHHHHHHHTSSS
T ss_pred ccCchHHHHHHHHhccccc
Confidence 4677888999999999854
No 63
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=65.38 E-value=7.9 Score=34.33 Aligned_cols=41 Identities=2% Similarity=0.141 Sum_probs=34.4
Q ss_pred cceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
.+||++++|||-.. +..-+..+.+.|++.+..|.+|...+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 37899999999875 566667788899999999999998763
No 64
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=65.32 E-value=20 Score=33.54 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=42.3
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhc-cceeeEEEecCCCCC----------c---HHHHHHHHHHHhcCCCceEE
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKN-SVALDIVNFGEDDEG----------N---TEKLEALLAAVNNNDSSHLV 99 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKn-nVavDII~FGe~~~~----------n---~~kL~~fi~~vN~~~~Shlv 99 (332)
...+|+|||.-... .-..|++..++|++. .-.+-++..|..... . .+.|+.++...+-.++-+|+
T Consensus 261 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~ 340 (499)
T 2r60_A 261 ELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMF 340 (499)
T ss_dssp TSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEE
T ss_pred CCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEEC
Confidence 45789999986543 567788888888765 223567778873311 1 57788888876544444443
No 65
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=65.32 E-value=6.1 Score=31.08 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=34.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|+++.+|+--.+++-...|++.|++.++.|+++.+.+..
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~ 39 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN 39 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC
Confidence 678899998889999999999999999999999987654
No 66
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=65.15 E-value=22 Score=32.84 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=38.7
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.++|+|+|.. .-+.+.|++..++|++..-.+-+|..|... ...+.|+..+...+
T Consensus 196 ~~vi~~~~~~-~k~~~~ll~A~~~l~~~~p~~~lvivG~g~-~~~~~l~~~~~~~g 249 (374)
T 2xci_A 196 GEFIVAGSIH-TGEVEIILKAFKEIKKTYSSLKLILVPRHI-ENAKIFEKKARDFG 249 (374)
T ss_dssp SCEEEEEEEC-GGGHHHHHHHHHHHHTTCTTCEEEEEESSG-GGHHHHHHHHHHTT
T ss_pred CCEEEEEeCC-CchHHHHHHHHHHHHhhCCCcEEEEECCCH-HHHHHHHHHHHHCC
Confidence 3677777764 345788999999998876566777788655 44567888887653
No 67
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=64.74 E-value=8.1 Score=32.97 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=33.6
Q ss_pred ceEEEEecCCCcc---cHHHHHHHHHHhhhc--cceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKH---EKKVLEMIGRKLKKN--SVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~---dek~L~klaKkLKKn--nVavDII~FGe~ 75 (332)
++|+++.|||-.+ +..-+..+.+.|++. ++.|.+|...+.
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSS
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 5899999999974 666678889999988 899999988764
No 68
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=64.52 E-value=8.7 Score=31.70 Aligned_cols=40 Identities=5% Similarity=0.250 Sum_probs=32.4
Q ss_pred ceEEEEecCCCc---ccHHHHHHHHHHhhhcc--ceeeEEEecCC
Q 020031 36 QRIIVFVGSPIK---HEKKVLEMIGRKLKKNS--VALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~---~dek~L~klaKkLKKnn--VavDII~FGe~ 75 (332)
++|+++.|||-. .+.+-+..+++.|++.+ +.|++|...+.
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 589999999984 35666678889999875 88999998764
No 69
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=63.69 E-value=12 Score=32.23 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=40.5
Q ss_pred CccccceEEEEecCCC----c--ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEe
Q 020031 31 NKKQQQRIIVFVGSPI----K--HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHV 101 (332)
Q Consensus 31 nK~~~qRIIvFVGSPi----~--~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~V 101 (332)
..+..-||++++|||- . .+..-+..+.+.|++.+..|++|...+.. . +..+++.+..- -+||.+
T Consensus 8 ~~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~--d---~~~~~~~l~~A--D~iV~~ 77 (204)
T 2amj_A 8 HHHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDY--D---VKAEVQNFLWA--DVVIWQ 77 (204)
T ss_dssp ----CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCC--C---HHHHHHHHHHC--SEEEEE
T ss_pred cccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccc--c---HHHHHHHHHhC--CEEEEE
Confidence 3455679999999999 2 34555667788888889999999998644 2 44555555322 344444
No 70
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=62.33 E-value=6.8 Score=36.64 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=30.4
Q ss_pred HHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccce
Q 020031 20 QVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 20 qiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVa 66 (332)
+|++||--|-++.+-+ | |+|+|+|+....--...|.+.+++.++.
T Consensus 223 ~I~~la~~~a~~~~i~-~-Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~ 267 (287)
T 2ews_A 223 VVTTMAITVAREFKTE-N-IVYIGSSFHNNALLRKVVEDYTVLRGCK 267 (287)
T ss_dssp HHHHHHHHHHHHTTCC-E-EEEESGGGTTCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhCCCC-e-EEEeCCchhcCHHHHHHHHHHHhhCCce
Confidence 6777776554444444 5 9999999987766555666666665543
No 71
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=61.96 E-value=9.5 Score=31.69 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=33.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
++|+++.|| -..+++-+..+++.|++.++.|++|...+.
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 689999999 445777778899999999999999998764
No 72
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=61.73 E-value=8.7 Score=34.70 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=44.6
Q ss_pred ccceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEEecCCCCC-----cHHHHHHHHHHHhcCC
Q 020031 34 QQQRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVNFGEDDEG-----NTEKLEALLAAVNNND 94 (332)
Q Consensus 34 ~~qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~FGe~~~~-----n~~kL~~fi~~vN~~~ 94 (332)
..++|++++|||-. .+..-+..+++.|++.++.|.+|...+..-. ..+.+..+++.+..-|
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD 100 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE 100 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC
Confidence 45799999999975 3556667788899988999999998774311 1345777888885433
No 73
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=61.09 E-value=12 Score=34.73 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=45.8
Q ss_pred ccceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEEecCCCCC------cHHHHHHHHHHHhcCC
Q 020031 34 QQQRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVNFGEDDEG------NTEKLEALLAAVNNND 94 (332)
Q Consensus 34 ~~qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~FGe~~~~------n~~kL~~fi~~vN~~~ 94 (332)
..+||++++|||-. .+..-+..+++.|++.++.|.+|..++..-. ..+.+..|++.+..-|
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD 125 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE 125 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC
Confidence 46899999999985 3566667788999989999999998874311 2356788888885433
No 74
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=60.66 E-value=43 Score=29.65 Aligned_cols=81 Identities=9% Similarity=0.153 Sum_probs=53.5
Q ss_pred hcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCch
Q 020031 28 HRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNA 107 (332)
Q Consensus 28 HRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~ 107 (332)
|.-..+.+-+|.++.||. -|-.-+.+.++.|++-+|..|+-..|=+- ..++|..|++.....+-.=||.+--+..-
T Consensus 4 ~~~~~~~~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR--~p~~l~~~~~~a~~~g~~ViIa~AG~aa~ 79 (170)
T 1xmp_A 4 HHHHHHMKSLVGVIMGST--SDWETMKYACDILDELNIPYEKKVVSAHR--TPDYMFEYAETARERGLKVIIAGAGGAAH 79 (170)
T ss_dssp -------CCSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTTT--SHHHHHHHHHHTTTTTCCEEEEEEESSCC
T ss_pred ccccccCCCcEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEeccC--CHHHHHHHHHHHHhCCCcEEEEECCchhh
Confidence 333455677899999996 56777889999999999999998888544 78999999987654333334443333333
Q ss_pred hhHHh
Q 020031 108 LSDVL 112 (332)
Q Consensus 108 LsD~l 112 (332)
|.=+|
T Consensus 80 Lpgvv 84 (170)
T 1xmp_A 80 LPGMV 84 (170)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 44444
No 75
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=60.42 E-value=34 Score=27.77 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=37.9
Q ss_pred eEEEEe---cCCCcccHHHHHHHHHHhhhccceeeEEE---ecCCCCCcHHHHHHHHHH
Q 020031 37 RIIVFV---GSPIKHEKKVLEMIGRKLKKNSVALDIVN---FGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 37 RIIvFV---GSPi~~dek~L~klaKkLKKnnVavDII~---FGe~~~~n~~kL~~fi~~ 89 (332)
-+|.|. |.|....-..|.+|.++++..+|.|=-|+ ||....++.+.+..|+..
T Consensus 41 vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~ 99 (180)
T 3kij_A 41 SLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK 99 (180)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred EEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence 344454 44555677789999999998887666565 444444678999999998
No 76
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=59.80 E-value=8.9 Score=33.19 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=36.2
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
..++|+|+.||.-..+++-...|++.|+..++.|+++.+.+
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~ 60 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDS 60 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGG
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHH
Confidence 46789999999999999999999999999899999888754
No 77
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=59.62 E-value=32 Score=31.89 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=35.4
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.++|+++.+|+-..+++-...+++.|+..++.|+++...+..
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~ 297 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSD 297 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCC
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCC
Confidence 368999999998788888899999999888888888876543
No 78
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=59.30 E-value=5.6 Score=33.30 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=39.9
Q ss_pred cceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEEecCCCCC--------cHHHHHHHHHHHhc
Q 020031 35 QQRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVNFGEDDEG--------NTEKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~FGe~~~~--------n~~kL~~fi~~vN~ 92 (332)
.++|+++.|||-. .+++-+..+++.|+ .++.|++|...+...- ..+.+..+++.+..
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 72 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRA 72 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHh
Confidence 3789999999974 45666677788888 7889999988762211 12456777777754
No 79
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=58.91 E-value=12 Score=28.79 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=33.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 38 IIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 38 IIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|+++.+|+--.+++-...|++.|+..++.|+++...+.+
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~ 40 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTN 40 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCC
Confidence 678889998888888899999999999999999876543
No 80
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=58.54 E-value=1e+02 Score=30.10 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=29.5
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccc----eeeEEEecCCCCCc-------HHHHHHHHHHHhc
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSV----ALDIVNFGEDDEGN-------TEKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnV----avDII~FGe~~~~n-------~~kL~~fi~~vN~ 92 (332)
..+||+|||.=-.. .-..|++--++|++..- .|-+|.+|...... .+.|+.++..+|.
T Consensus 254 ~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~ 323 (482)
T 1uqt_A 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRING 323 (482)
T ss_dssp TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhh
Confidence 45788888863322 33445554455543321 24566677532111 3455666666664
No 81
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=58.17 E-value=21 Score=28.80 Aligned_cols=48 Identities=10% Similarity=-0.024 Sum_probs=30.9
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~ 88 (332)
..++|+|+|+-... .-..|++..++|+ + +.++.+|... . .+.|+.++.
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~--~--~~l~i~G~~~-~-~~~l~~~~~ 70 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKLQ--D--EKLYIVGWFS-K-GDHAERYAR 70 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHCT--T--SCEEEEBCCC-T-TSTHHHHHH
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhCC--C--cEEEEEecCc-c-HHHHHHHHH
Confidence 56788999986543 4566777777773 3 4555666544 2 246777777
No 82
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=57.98 E-value=12 Score=30.96 Aligned_cols=39 Identities=10% Similarity=0.314 Sum_probs=31.9
Q ss_pred ceEEEEecCCCc--ccHHHHHHHHHHhhhc------cceeeEEEecC
Q 020031 36 QRIIVFVGSPIK--HEKKVLEMIGRKLKKN------SVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~--~dek~L~klaKkLKKn------nVavDII~FGe 74 (332)
++|+++.|||-. .+.+-+..+++.|++. ++.|++|...+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 589999999984 4677777888889886 68999988764
No 83
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=56.08 E-value=12 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=33.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
+||+|+.+|+--.+++-...|++.|... +.|+|+...+.
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~ 39 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANA 39 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhC
Confidence 4799999999988999999999999877 77888887543
No 84
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=54.59 E-value=9.9 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=22.9
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHhhc
Q 020031 285 VSSILASLPGVDPEDPSVKDVLTSMQN 311 (332)
Q Consensus 285 l~svL~~LPGVDpnd~~i~~al~~l~~ 311 (332)
|...|..+|||||.||.=+.+|.-|..
T Consensus 31 V~rfLs~~eg~d~~d~~r~rLl~HL~~ 57 (64)
T 2db7_A 31 VARYLSIIEGLDASDPLRVRLVSHLNN 57 (64)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 567899999999999988888887764
No 85
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=54.44 E-value=52 Score=30.42 Aligned_cols=78 Identities=6% Similarity=-0.029 Sum_probs=46.9
Q ss_pred ceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHhhh
Q 020031 36 QRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLS 114 (332)
Q Consensus 36 qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~s 114 (332)
.++|+|||.-... .-..|++..++|++.++ .++..|.....-.+.|+.++...+ ++-++ ....-...+.+.+-.
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~--~l~ivG~g~~~~~~~l~~~~~~~~--~~v~~-~~g~~~~~~~~~~~~ 365 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGG--RLVVLGAGDVALEGALLAAASRHH--GRVGV-AIGYNEPLSHLMQAG 365 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHHTTC--EEEEEECBCHHHHHHHHHHHHHTT--TTEEE-EESCCHHHHHHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHhcCc--eEEEEeCCchHHHHHHHHHHHhCC--CcEEE-ecCCCHHHHHHHHhc
Confidence 4599999986543 55778888899987654 566667654112567788777662 33332 122222334566666
Q ss_pred cCcc
Q 020031 115 TPIF 118 (332)
Q Consensus 115 SpI~ 118 (332)
+-|+
T Consensus 366 adv~ 369 (485)
T 1rzu_A 366 CDAI 369 (485)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 5554
No 86
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=54.20 E-value=14 Score=31.01 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=31.0
Q ss_pred ceEEEEecCCCc----ccHHHHHHHHHHhhhcc--ceeeEEEec
Q 020031 36 QRIIVFVGSPIK----HEKKVLEMIGRKLKKNS--VALDIVNFG 73 (332)
Q Consensus 36 qRIIvFVGSPi~----~dek~L~klaKkLKKnn--VavDII~FG 73 (332)
++|+++.|||-. .+..-+..+++.|++.+ +.|++|...
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 489999999984 35555677888999877 999999887
No 87
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=54.03 E-value=41 Score=30.79 Aligned_cols=41 Identities=7% Similarity=0.267 Sum_probs=32.8
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
.++|+++-+|+-..+++-...|++.|+..++.|+++...+.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~ 292 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKAC 292 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTS
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 46888888998777888888888888888888888777543
No 88
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=53.60 E-value=33 Score=27.03 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=37.6
Q ss_pred ceEEEEecC----CCcccHHHHHHHHHHhhhcc--ceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGS----PIKHEKKVLEMIGRKLKKNS--VALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGS----Pi~~dek~L~klaKkLKKnn--VavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--+|.|.++ |....-..|.++.+++++.+ |.|=.|++.... ++.+.+.+|++..
T Consensus 35 ~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~-d~~~~~~~~~~~~ 94 (174)
T 1xzo_A 35 VWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEN-DKPKQLKKFAANY 94 (174)
T ss_dssp CEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTT-CCHHHHHHHHTTS
T ss_pred EEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHc
Confidence 357778765 55667888999999999876 554444443322 4678899998754
No 89
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=53.44 E-value=46 Score=34.76 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=48.9
Q ss_pred CcccccCccccHH----HHHHHHHHHhhhcCCccccceEEEEecCCCcc---cH------------------------H-
Q 020031 4 DAGLEIGGELNLA----AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH---EK------------------------K- 51 (332)
Q Consensus 4 lH~i~i~G~~~~~----~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~---de------------------------k- 51 (332)
+..++|.|+.+.. .||-.|.+-.+.---++...|||||+.---.+ |- .
T Consensus 207 v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~ 286 (690)
T 3fcs_B 207 VKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTT 286 (690)
T ss_dssp HTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGT
T ss_pred hhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccc
Confidence 4556777876654 34444433333333344588999998632211 11 1
Q ss_pred ----HHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 52 ----VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 52 ----~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
.+..|.++|.+|||.+=+.+.. ......+.|.+.+
T Consensus 287 ~DypSi~ql~~~l~~~~i~~ifavt~----~~~~~y~~l~~~i 325 (690)
T 3fcs_B 287 MDYPSLGLMTEKLSQKNINLIFAVTE----NVVNLYQNYSELI 325 (690)
T ss_dssp SCCCCHHHHHHHHHHTTCEEEEEEEG----GGHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHcCCeEEEEEeC----CchhhHHHHHhhc
Confidence 2789999999999965555544 3345556666665
No 90
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=53.33 E-value=20 Score=29.03 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=39.9
Q ss_pred cccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 33 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
...+.+||||...-..|-.++.. .-||++|+.||+---+.. +=+.+...|+.+..+
T Consensus 49 dngkplvvfvngasqndvnefqn---eakkegvsydvlkstdpe-eltqrvreflktags 104 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQN---EAKKEGVSYDVLKSTDPE-ELTQRVREFLKTAGS 104 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHH---HHHHHTCEEEEEECCCHH-HHHHHHHHHHHHTTS
T ss_pred hcCCeEEEEecCcccccHHHHHH---HHHhcCcchhhhccCCHH-HHHHHHHHHHHhccc
Confidence 34578999998765555555544 457899999998765544 456778888888754
No 91
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=53.18 E-value=29 Score=31.70 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhcC--------CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 17 AGIQVAQLALKHRQ--------NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 17 ~gIqiA~LALKHRq--------nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.|..+|+.++++-. |.+...||+||+|+ -.+=-+=.-+|+.|+..++.|.|+.+|...
T Consensus 59 Ag~ava~~i~~~~~~~~~~~~~~~~~~~~vlVlcG~--GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~ 124 (259)
T 3d3k_A 59 TGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGP--HVKGAQGISCGRHLANHDVQVILFLPNFVK 124 (259)
T ss_dssp HHHHHHHHHHHHTCCC---------CCCEEEEEECS--SHHHHHHHHHHHHHHHTTCEEEEECCBCSS
T ss_pred HHHHHHHHHHHHccccccccccccCCCCeEEEEECC--CCCHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 46777887776532 22234689999985 344455678999999999999999998543
No 92
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=53.11 E-value=90 Score=27.46 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=52.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
-||.++.||. -|-.-+.+.++.|++-+|..|+-..|=+ .+.++|..|++.....+-.-||.+--+..-|.=+|
T Consensus 6 p~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv 78 (166)
T 3oow_A 6 VQVGVIMGSK--SDWSTMKECCDILDNLGIGYECEVVSAH--RTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMV 78 (166)
T ss_dssp EEEEEEESSG--GGHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHH
T ss_pred CeEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEcCc--CCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHH
Confidence 4789999996 5677788999999999999999888844 47899999998885443333444433333344443
No 93
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=53.11 E-value=20 Score=31.07 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=41.8
Q ss_pred cceEEEEecCCCccc-HHHHHHHHHHhhhccceeeEEEecCC-------CCCcHHHHHHHHHHHhcCC
Q 020031 35 QQRIIVFVGSPIKHE-KKVLEMIGRKLKKNSVALDIVNFGED-------DEGNTEKLEALLAAVNNND 94 (332)
Q Consensus 35 ~qRIIvFVGSPi~~d-ek~L~klaKkLKKnnVavDII~FGe~-------~~~n~~kL~~fi~~vN~~~ 94 (332)
-++|++++||+=... ...|.+...++-+.++.|++|...+. ..+..+..++|.+.|..-|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD 69 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSD 69 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSS
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCC
Confidence 368999999997652 44565666666678999999987652 1122467888999996433
No 94
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=52.80 E-value=13 Score=32.34 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=32.8
Q ss_pred ceEEEEecCCCc--ccHHHHHHHHHHhhhc-cceeeEEEecCC
Q 020031 36 QRIIVFVGSPIK--HEKKVLEMIGRKLKKN-SVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~--~dek~L~klaKkLKKn-nVavDII~FGe~ 75 (332)
++|+++.|||-. .+..-+..+++.|++. ++.|++|...+.
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~ 44 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNS 44 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccC
Confidence 489999999984 4667677889999888 899999987654
No 95
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=52.68 E-value=8.7 Score=24.54 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=12.2
Q ss_pred HHHHHHHHhcHHHHHHH
Q 020031 153 PELALALRVSMEEERAR 169 (332)
Q Consensus 153 PELAmALR~SmEEEr~R 169 (332)
-||+|||-+|+-|..+|
T Consensus 5 EEl~LAlAlS~sEae~~ 21 (26)
T 2d3g_P 5 EELQLALALSQSEAEEK 21 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888888887776554
No 96
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=51.72 E-value=37 Score=25.41 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=38.5
Q ss_pred ceEEEEecCCCc----ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFVGSPi~----~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
+.+|+++.++-. .....|.++.+++++.+|.|=.|++.... .+.+.+..|+..-+
T Consensus 35 k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~-~~~~~~~~~~~~~~ 93 (145)
T 3erw_A 35 QKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSE-QNQQVVEDFIKANK 93 (145)
T ss_dssp SEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGS-SCHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCc-CCHHHHHHHHHHcC
Confidence 345554445543 45677888999988778777777776554 57899999988653
No 97
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=50.98 E-value=55 Score=30.26 Aligned_cols=79 Identities=9% Similarity=0.014 Sum_probs=46.7
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHhh
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL 113 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~ 113 (332)
...+|+|||.-... .-..|++..++|++.++ .++..|.....-.+.|+.++...+ ++-++ ....-...+.+.+.
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~--~l~ivG~g~~~~~~~l~~~~~~~~--~~v~~-~~g~~~~~~~~~~~ 365 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGG--QLALLGAGDPVLQEGFLAAAAEYP--GQVGV-QIGYHEAFSHRIMG 365 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHHTTC--EEEEEEEECHHHHHHHHHHHHHST--TTEEE-EESCCHHHHHHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhhCCc--EEEEEeCCchHHHHHHHHHHHhCC--CcEEE-eCCCCHHHHHHHHH
Confidence 55789999975432 56778999999987655 455566543112467777777652 33321 22222234566666
Q ss_pred hcCcc
Q 020031 114 STPIF 118 (332)
Q Consensus 114 sSpI~ 118 (332)
.+-|+
T Consensus 366 ~adv~ 370 (485)
T 2qzs_A 366 GADVI 370 (485)
T ss_dssp HCSEE
T ss_pred hCCEE
Confidence 66555
No 98
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=50.65 E-value=19 Score=31.09 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=32.3
Q ss_pred ceEEEEecCCC--cc--cHHHHHHHHHHhhhc--cceeeEEEecCC
Q 020031 36 QRIIVFVGSPI--KH--EKKVLEMIGRKLKKN--SVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi--~~--dek~L~klaKkLKKn--nVavDII~FGe~ 75 (332)
+||+++.|||- .. +..-+..+.+.|++. ++.|.+|..++.
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~ 50 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKE 50 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGS
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 68999999998 43 456667788888887 899999988763
No 99
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=50.46 E-value=18 Score=28.92 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=31.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
++|+|+.+|+--.+++-...|++.|...++.|+++.
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 378999999999999999999999998888877763
No 100
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=49.72 E-value=89 Score=27.25 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=43.2
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN 93 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~ 93 (332)
-+|.++.||. -|-.-+.+.++.|++-+|..|+-..|=+ -..++|..|++.....
T Consensus 3 ~~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~ev~V~saH--R~p~~~~~~~~~a~~~ 56 (159)
T 3rg8_A 3 PLVIILMGSS--SDMGHAEKIASELKTFGIEYAIRIGSAH--KTAEHVVSMLKEYEAL 56 (159)
T ss_dssp CEEEEEESSG--GGHHHHHHHHHHHHHTTCEEEEEECCTT--TCHHHHHHHHHHHHTS
T ss_pred CeEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHhhhc
Confidence 3688888886 5667788888999999999998888844 4789999999877643
No 101
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=48.85 E-value=90 Score=27.37 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=44.5
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN 93 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~ 93 (332)
+.+|.++.||. -|-.-+.+.++.|++-+|..|+-..|=+ ...++|..|++.....
T Consensus 3 ~~~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~a~~~ 57 (163)
T 3ors_A 3 AMKVAVIMGSS--SDWKIMQESCNMLDYFEIPYEKQVVSAH--RTPKMMVQFASEARER 57 (163)
T ss_dssp CCCEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHTTTT
T ss_pred CCeEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEECCc--CCHHHHHHHHHHHHhC
Confidence 46788999986 5667788899999999999998888844 4789999999877643
No 102
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=48.68 E-value=18 Score=30.74 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=42.8
Q ss_pred ceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCCCC-------CcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 36 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDE-------GNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 36 qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~~~-------~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
+||+++.|||-.. +.+-+..+.+.++ .++.|.+|...+... ...+.+..+++.+..- -.||.+-|
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~A--D~iV~~sP 76 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEA--DAIWIFSP 76 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHC--SEEEEECC
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhC--CEEEEECc
Confidence 4899999999753 4555566777776 688898888865321 1235577788888533 34554433
No 103
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=47.96 E-value=96 Score=27.49 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=44.6
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN 93 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~ 93 (332)
+.||.++.||. -|-.-+.+.++.|++-+|..|+-..|=+ ...++|..|++.....
T Consensus 12 ~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~ev~V~SaH--R~p~~~~~~~~~a~~~ 66 (174)
T 3kuu_A 12 GVKIAIVMGSK--SDWATMQFAADVLTTLNVPFHVEVVSAH--RTPDRLFSFAEQAEAN 66 (174)
T ss_dssp CCCEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHTTTT
T ss_pred CCcEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHHHhC
Confidence 34699999996 5667788999999999999999888844 4789999999877543
No 104
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=47.84 E-value=35 Score=32.00 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcC--------CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 17 AGIQVAQLALKHRQ--------NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 17 ~gIqiA~LALKHRq--------nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.|..||+.++++-. |.++..||+||+|+= .+=-+=.-+|+.|+..++.|.|+..|...
T Consensus 106 AG~ava~~i~~~~~~~~~~~~~~~~~~~~vlVlcG~G--NNGGDGlv~AR~L~~~G~~V~V~~~~~~~ 171 (306)
T 3d3j_A 106 TGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPH--VKGAQGISCGRHLANHDVQVILFLPNFVK 171 (306)
T ss_dssp HHHHHHHHHHHHHC-----------CCCEEEEEECSS--HHHHHHHHHHHHHHHTTCEEEEECCCCSS
T ss_pred HHHHHHHHHHHHccccccccccccCCCCeEEEEECCC--CCHHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 46677887777532 122346999998853 44455678999999999999999888543
No 105
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=47.78 E-value=9 Score=32.95 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=42.2
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceee-EEEecCCCCCc---------HHHHHHHHHHHhcCCCceEEEeC
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALD-IVNFGEDDEGN---------TEKLEALLAAVNNNDSSHLVHVP 102 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavD-II~FGe~~~~n---------~~kL~~fi~~vN~~~~Shlv~VP 102 (332)
.+||++++|||-.. ....|.+...++.+.++.|+ +|..++..--+ .+.+..|++.+..-| .||.+-
T Consensus 4 ~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD--~iv~~s 80 (193)
T 3svl_A 4 KLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQAD--GVVIVT 80 (193)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSS--EEEEEE
T ss_pred CCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCC--EEEEEe
Confidence 47999999999875 33445554455556788888 88877532111 355777888885433 444443
No 106
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=47.64 E-value=27 Score=31.45 Aligned_cols=58 Identities=3% Similarity=-0.009 Sum_probs=40.7
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCc----HHHHHHHHHHHhc
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGN----TEKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n----~~kL~~fi~~vN~ 92 (332)
...+|+|||.-... .-..|++..++|++..-.+.++..|...... .+.|+.++...+-
T Consensus 183 ~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l 245 (413)
T 3oy2_A 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGV 245 (413)
T ss_dssp TSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTC
T ss_pred CceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCc
Confidence 56789999994432 5677888888888776666777777654211 2778888877653
No 107
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=47.60 E-value=14 Score=30.43 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=33.2
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
.++|+|+.+|.-..+++-...|++.|...++.|+++.+-+
T Consensus 9 ~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 48 (167)
T 1ykg_A 9 MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGD 48 (167)
T ss_dssp ---CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGG
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhh
Confidence 4589999999999999999999999999888888887754
No 108
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=47.58 E-value=71 Score=28.31 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=43.5
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
+.+|.++.||. -|-.-+.+.++.|++-+|..|+-..|=+ ...++|..|++....
T Consensus 7 ~~~V~IimgS~--SD~~v~~~a~~~L~~~gi~~ev~V~SaH--R~p~~~~~~~~~a~~ 60 (174)
T 3lp6_A 7 RPRVGVIMGSD--SDWPVMADAAAALAEFDIPAEVRVVSAH--RTPEAMFSYARGAAA 60 (174)
T ss_dssp CCSEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TCHHHHHHHHHHHHH
T ss_pred CCeEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEECCC--CCHHHHHHHHHHHHh
Confidence 45788999986 5667788889999999999998888844 478999999887754
No 109
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=47.27 E-value=36 Score=29.79 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=43.9
Q ss_pred cceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHhh
Q 020031 35 QQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL 113 (332)
Q Consensus 35 ~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~ 113 (332)
..++|+|||+-... .-..|++..++| .+.++.+|... ..+.|+.++...+ ++-||+---+.. -|.+.+.
T Consensus 161 ~~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g~--~~~~l~~~~~~~~--~~v~~~g~~~~~-~l~~~~~ 230 (342)
T 2iuy_A 161 KEDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPAW--EPEYFDEITRRYG--STVEPIGEVGGE-RRLDLLA 230 (342)
T ss_dssp CCSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCCC--CHHHHHHHHHHHT--TTEEECCCCCHH-HHHHHHH
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCcc--cHHHHHHHHHHhC--CCEEEeccCCHH-HHHHHHH
Confidence 45689999986543 456677777776 45566677654 4578888888874 333332211111 2455555
Q ss_pred hcCcc
Q 020031 114 STPIF 118 (332)
Q Consensus 114 sSpI~ 118 (332)
.+-|+
T Consensus 231 ~adv~ 235 (342)
T 2iuy_A 231 SAHAV 235 (342)
T ss_dssp HCSEE
T ss_pred hCCEE
Confidence 55544
No 110
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=47.22 E-value=15 Score=40.11 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=56.1
Q ss_pred ccCccccHHHHHHHHHHHhhh--cCCccccceEEEEecC-CCcccHHHHHHHHHHhhhccceeeEEEecCCCC--CcHHH
Q 020031 8 EIGGELNLAAGIQVAQLALKH--RQNKKQQQRIIVFVGS-PIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE--GNTEK 82 (332)
Q Consensus 8 ~i~G~~~~~~gIqiA~LALKH--RqnK~~~qRIIvFVGS-Pi~~dek~L~klaKkLKKnnVavDII~FGe~~~--~n~~k 82 (332)
.++|..++..||+.|.=-+.+ +-.+....|+||++-. --..+...+...++++|+.+|.|-.|-+|.... .+.+.
T Consensus 202 ~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~e 281 (1095)
T 3k6s_A 202 QLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKE 281 (1095)
T ss_dssp CCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHH
T ss_pred cccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccccccccCHHH
Confidence 567889999999988543322 1122233455555522 222344567788999999999999999997620 13344
Q ss_pred HHHHHHHHhcC-CCceEEEeCC
Q 020031 83 LEALLAAVNNN-DSSHLVHVPP 103 (332)
Q Consensus 83 L~~fi~~vN~~-~~Shlv~VP~ 103 (332)
|+. +-+. ++.|+..+..
T Consensus 282 L~~----IAs~p~g~~vf~v~d 299 (1095)
T 3k6s_A 282 LND----IASKPSQEHIFKVED 299 (1095)
T ss_dssp HHT----TSCSSTTTSCCCBSC
T ss_pred HHH----HHcCCCCceEEEcCC
Confidence 443 3333 3448877764
No 111
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=46.44 E-value=43 Score=30.33 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhcCCc-----cccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 17 AGIQVAQLALKHRQNK-----KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK-----~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
.|..+|+..+++-... +...||+||+|+ -.+=-+=.-+|+.|+..++.|.|+..+..
T Consensus 35 Ag~ava~~i~~~~~~~~~~~~~~~~~v~VlcG~--GNNGGDGlv~AR~L~~~G~~V~v~~~~~~ 96 (246)
T 1jzt_A 35 AGFSVAQAVCRQFPLRGKTETEKGKHVFVIAGP--GNNGGDGLVCARHLKLFGYNPVVFYPKRS 96 (246)
T ss_dssp HHHHHHHHHHHHSCCSSCCHHHHTCEEEEEECS--SHHHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHHHHHHHHccccccccccCCCeEEEEECC--CCCHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 4677888887764321 112589998886 34555567899999999999999988863
No 112
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=45.95 E-value=16 Score=32.03 Aligned_cols=39 Identities=5% Similarity=0.001 Sum_probs=30.4
Q ss_pred ceEEEEecC--CCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGS--PIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGS--Pi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
|||++++.+ |..-.+..+..|++.|.+.+..|.||+.+.
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 41 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSW 41 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEE
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCC
Confidence 577666654 544567889999999999999999999873
No 113
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=45.61 E-value=26 Score=29.83 Aligned_cols=63 Identities=14% Similarity=0.301 Sum_probs=42.1
Q ss_pred ceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCCCCC---------------cHHHHHHHHHHHhcCCCceE
Q 020031 36 QRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEG---------------NTEKLEALLAAVNNNDSSHL 98 (332)
Q Consensus 36 qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~~~~---------------n~~kL~~fi~~vN~~~~Shl 98 (332)
|+|++++|||-.. +..-+..+.+.| +.+..|.++...+..-. ..+.+..+++.+..-| ++
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD--~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWAD--HL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCS--EE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCC--EE
Confidence 6899999999864 355556667777 77899999998765310 1244667777775333 44
Q ss_pred EEe
Q 020031 99 VHV 101 (332)
Q Consensus 99 v~V 101 (332)
|.+
T Consensus 78 V~~ 80 (196)
T 3lcm_A 78 IFI 80 (196)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 114
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=45.61 E-value=22 Score=28.75 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=30.9
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
++|+|+.+|+--.+++-...|++.|... .|+++...+
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~ 38 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQ 38 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEccc
Confidence 6899999999888899999999999865 567777654
No 115
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=45.60 E-value=22 Score=29.06 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=27.6
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
..++|||+.+ .+....|++.|++.++.+-++. |..
T Consensus 34 ~~~~lVF~~~-----~~~~~~l~~~L~~~~~~~~~~~-g~~ 68 (175)
T 2rb4_A 34 IGQAIIFCQT-----RRNAKWLTVEMIQDGHQVSLLS-GEL 68 (175)
T ss_dssp CSEEEEECSC-----HHHHHHHHHHHHTTTCCEEEEC-SSC
T ss_pred CCCEEEEECC-----HHHHHHHHHHHHHcCCcEEEEe-CCC
Confidence 5689999975 5778999999999998876654 443
No 116
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=45.58 E-value=11 Score=32.77 Aligned_cols=56 Identities=5% Similarity=0.092 Sum_probs=37.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
++|+++.|||-.....-...+++.+++.+..|.++...+...+...-+...++.+.
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~ 57 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIE 57 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHH
Confidence 57999999998764344556777888888889998876532111123555566664
No 117
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=45.31 E-value=87 Score=23.45 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=34.0
Q ss_pred cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 43 GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 43 GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
|.|.......|.++.++++..+|.|=.|++. .+.+.+..|++..+
T Consensus 43 C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d----~~~~~~~~~~~~~~ 87 (148)
T 3hcz_A 43 CGHCQQETPKLYDWWLKNRAKGIQVYAANIE----RKDEEWLKFIRSKK 87 (148)
T ss_dssp GCTTCSHHHHHHHHHHHHGGGTEEEEEEECC----SSSHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHhccCCEEEEEEEec----CCHHHHHHHHHHcC
Confidence 4455667888999999999887766666664 34468999999875
No 118
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=45.19 E-value=14 Score=28.07 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=6.9
Q ss_pred CCChHHHHHHHH
Q 020031 248 AEDDPELALALQ 259 (332)
Q Consensus 248 ~~Eee~ia~Alq 259 (332)
.++++.++++|+
T Consensus 7 e~~ee~~~~~m~ 18 (71)
T 2llw_A 7 ETPEETYQRAMK 18 (71)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHhc
Confidence 455666666654
No 119
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=44.91 E-value=52 Score=26.77 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=35.7
Q ss_pred eEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEec---CCCCCcHHHHHHHHHH
Q 020031 37 RIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFG---EDDEGNTEKLEALLAA 89 (332)
Q Consensus 37 RIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FG---e~~~~n~~kL~~fi~~ 89 (332)
-+|.|.++ |....-..|.++.+++++.+|.|=.|++- ....++.+.+..|++.
T Consensus 52 vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~ 110 (181)
T 2p31_A 52 SLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 110 (181)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred EEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHh
Confidence 45555533 44456678899999999888776666642 2221467899999987
No 120
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=44.74 E-value=41 Score=27.57 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=45.1
Q ss_pred ceEEEEec----CCCcccHHHHHHHHHHhhhccceeeEEEecCC-CCCcHHHHHHHHHHHhcC-CCceEEEeC
Q 020031 36 QRIIVFVG----SPIKHEKKVLEMIGRKLKKNSVALDIVNFGED-DEGNTEKLEALLAAVNNN-DSSHLVHVP 102 (332)
Q Consensus 36 qRIIvFVG----SPi~~dek~L~klaKkLKKnnVavDII~FGe~-~~~n~~kL~~fi~~vN~~-~~Shlv~VP 102 (332)
--+|.|.. +|....-.+|.+|-+++++++..|-+|.+.-. ..++.++|.+|++..+-+ .+=|+++-+
T Consensus 34 ~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~ 106 (170)
T 4hde_A 34 VWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGY 106 (170)
T ss_dssp CEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCS
T ss_pred EEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcc
Confidence 34555663 34556678899999999988877777776532 125789999999876533 244666543
No 121
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=44.30 E-value=1e+02 Score=27.45 Aligned_cols=73 Identities=8% Similarity=0.150 Sum_probs=52.8
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
-+|.|+.||. -|-.-+.+.++.|++-+|..|+-..|=+- ..++|..|++.....+-.-||.+--+..-|.=+|
T Consensus 22 ~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR--~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv 94 (182)
T 1u11_A 22 PVVGIIMGSQ--SDWETMRHADALLTELEIPHETLIVSAHR--TPDRLADYARTAAERGLNVIIAGAGGAAHLPGMC 94 (182)
T ss_dssp CSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTTT--CHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH
T ss_pred CEEEEEECcH--HHHHHHHHHHHHHHHcCCCeEEEEEcccC--CHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHH
Confidence 4799999996 56777889999999999999999988554 7899999998775433334444433333344443
No 122
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=44.20 E-value=49 Score=27.01 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=36.7
Q ss_pred ceEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEe---cCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNF---GEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~F---Ge~~~~n~~kL~~fi~~vN 91 (332)
--+|.|.++ |....-..|.++.+++++.+|.|=.|++ +.....+.+.+.+|++..+
T Consensus 51 ~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~ 112 (185)
T 2gs3_A 51 VCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYN 112 (185)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTT
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcC
Confidence 346666643 3335567788999999988776666653 2223246788999997653
No 123
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=44.18 E-value=33 Score=28.68 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 87 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi 87 (332)
..++|||+.+ .+....|++.|++.++.+-.+.=+-...+-...++.|-
T Consensus 46 ~~k~lVF~~~-----~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 46 DSLTLVFVET-----KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CSCEEEEESC-----HHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCeEEEEECC-----HHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 5689999976 67788999999999988876543322223345677774
No 124
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=42.95 E-value=33 Score=30.59 Aligned_cols=41 Identities=5% Similarity=0.083 Sum_probs=32.2
Q ss_pred ceEEEEecCCCc------ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIK------HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~------~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+||+++.|||-. .+..-+..+.+.|++.+..|.++...+..
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~ 72 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGY 72 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCcc
Confidence 589999999963 24455567778888899999999998644
No 125
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=42.58 E-value=18 Score=30.48 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=26.8
Q ss_pred cccceEEEEecCCCcccHHHHHHHHHHhhhccce
Q 020031 33 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVa 66 (332)
+..++|+++.+||--.+++-...|++.|+...+.
T Consensus 4 ~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~~~ 37 (193)
T 3d7n_A 4 NSSSNTVVVYHSGYGHTHRMAEAVAEGAEATLHA 37 (193)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHhhhcceE
Confidence 3457899999999778888889999999875443
No 126
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=42.10 E-value=37 Score=26.57 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=36.7
Q ss_pred ceEEEEe---cCC-CcccHHHHHHHHHHhhhc---cceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFV---GSP-IKHEKKVLEMIGRKLKKN---SVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFV---GSP-i~~dek~L~klaKkLKKn---nVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
--+|.|. |.| ....-..|.++.+++++. +|.|=.|++.... ++.+.+.+|++..+
T Consensus 37 ~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~-d~~~~~~~~~~~~~ 98 (172)
T 2k6v_A 37 VVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPER-DPPEVADRYAKAFH 98 (172)
T ss_dssp EEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTT-CCHHHHHHHHHHHC
T ss_pred EEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCC-CCHHHHHHHHHHhC
Confidence 3455555 344 344566778888888775 6766666665433 56899999999864
No 127
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=41.83 E-value=1.3e+02 Score=29.21 Aligned_cols=82 Identities=24% Similarity=0.360 Sum_probs=52.5
Q ss_pred CccccHHHHHHHHHHHhhhcCCccccceEE-EEecC-----CCc---------ccHHHH--------HHHHHHhhhccce
Q 020031 10 GGELNLAAGIQVAQLALKHRQNKKQQQRII-VFVGS-----PIK---------HEKKVL--------EMIGRKLKKNSVA 66 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK~~~qRII-vFVGS-----Pi~---------~dek~L--------~klaKkLKKnnVa 66 (332)
.|.+++..-+.+|.-|-+| -.+|+ -|-.| |-. .+..+| ..+..+||++++.
T Consensus 83 ~g~~d~~~~~~~a~~Ak~~------GLkVlldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~ 156 (399)
T 1ur4_A 83 GGNNDLEKAIQIGKRATAN------GMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGID 156 (399)
T ss_dssp TTCCCHHHHHHHHHHHHHT------TCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHC------CCEEEEEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3678899988888888443 44444 46666 321 122222 2467889999999
Q ss_pred eeEEEecCCCCCc-------HHHHHHHH----HHHhcCCCceE
Q 020031 67 LDIVNFGEDDEGN-------TEKLEALL----AAVNNNDSSHL 98 (332)
Q Consensus 67 vDII~FGe~~~~n-------~~kL~~fi----~~vN~~~~Shl 98 (332)
+|+|..|.+. .+ -+.|..|+ .+|..-+..+.
T Consensus 157 ~~~vqvGNEi-~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~ 198 (399)
T 1ur4_A 157 IGMVQVGNET-NGGLAGETDWAKMSQLFNAGSQAVRETDSNIL 198 (399)
T ss_dssp EEEEEESSSC-SSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred CcEEEEcccc-ccccCCcccHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9999999876 43 56666665 44443344443
No 128
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=41.81 E-value=54 Score=26.65 Aligned_cols=51 Identities=20% Similarity=0.052 Sum_probs=37.6
Q ss_pred cceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 35 QQRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 35 ~qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
+--+|.|. |.|....-..|.++.+++++.+|.|=.|+. +..+.+.+|++..
T Consensus 32 k~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~-----d~~~~~~~~~~~~ 86 (187)
T 1we0_A 32 KWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVST-----DTHFVHKAWHENS 86 (187)
T ss_dssp SEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEES-----SCHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEEC-----CCHHHHHHHHHHh
Confidence 34677788 677777888899999999988766544443 2357888898865
No 129
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=41.60 E-value=80 Score=29.43 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=49.6
Q ss_pred CccccHHHHHHHHHHHhhhcCCccccceEEE-EecC-----CCc--------ccHHHH--------HHHHHHhhhcccee
Q 020031 10 GGELNLAAGIQVAQLALKHRQNKKQQQRIIV-FVGS-----PIK--------HEKKVL--------EMIGRKLKKNSVAL 67 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK~~~qRIIv-FVGS-----Pi~--------~dek~L--------~klaKkLKKnnVav 67 (332)
+|.+++..-++++.-|- .+-.++++ |-+| |.. .+..+| ..+.++|+++++.+
T Consensus 54 ~g~~~~~~~~~~~~~A~------~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~yt~~vl~~l~~~g~~~ 127 (332)
T 1hjs_A 54 DGNYNLDYNIAIAKRAK------AAGLGVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGIQP 127 (332)
T ss_dssp TCTTSHHHHHHHHHHHH------HTTCEEEEEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcCCHHHHHHHHHHHH------HCCCEEEEEeccCCCcCCccccCCccccccchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 37788888888888774 44566666 7776 422 011222 36678899999999
Q ss_pred eEEEecCCCCC----------cHHHHHHHHHH
Q 020031 68 DIVNFGEDDEG----------NTEKLEALLAA 89 (332)
Q Consensus 68 DII~FGe~~~~----------n~~kL~~fi~~ 89 (332)
++|..|.+... +.+.|..|+.+
T Consensus 128 ~~v~vGNEi~~g~~w~~g~~~~~~~~~~l~~~ 159 (332)
T 1hjs_A 128 TIVSIGNEIRAGLLWPTGRTENWANIARLLHS 159 (332)
T ss_dssp SEEEESSSGGGEETBTTEETTCHHHHHHHHHH
T ss_pred CEEEEeecccccccCcCCCccCHHHHHHHHHH
Confidence 99999987621 34666666655
No 130
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=41.10 E-value=57 Score=30.10 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCC---ccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 17 AGIQVAQLALKHRQN---KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 17 ~gIqiA~LALKHRqn---K~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
.|..+|+..+++-.. .+...||+||+|+ -.+=-+=.-+|+.|+..++.|.|+..+.
T Consensus 58 AG~ava~~i~~~~~~~~~~~~~~~VlVlcG~--GNNGGDGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 58 AGLSCATAIAKAYPPTSMSKSPPTVLVICGP--GNNGGDGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp HHHHHHHHHHHHSCGGGSSSSSCEEEEEECS--SHHHHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHHcccccccCCCCeEEEEECC--CCCHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 467788887775331 1233699999986 3455556789999999999999998886
No 131
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=41.08 E-value=1.3e+02 Score=26.46 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=41.8
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
+.+|.++.||. -|-.-+.+.++.|++-+|..|+-..|=+ ...++|..|++....
T Consensus 6 ~~~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~SaH--R~p~~~~~~~~~a~~ 59 (169)
T 3trh_A 6 KIFVAILMGSD--SDLSTMETAFTELKSLGIPFEAHILSAH--RTPKETVEFVENADN 59 (169)
T ss_dssp CCEEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCTT--TSHHHHHHHHHHHHH
T ss_pred CCcEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEccc--CCHHHHHHHHHHHHh
Confidence 34688888885 5666788888888888999888888744 478888888887653
No 132
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=41.02 E-value=32 Score=30.87 Aligned_cols=49 Identities=8% Similarity=0.134 Sum_probs=40.5
Q ss_pred hhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 27 KHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 27 KHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..|.-...+++|+||.||=--.+++-..+|++.|. .++.++|+++.+.+
T Consensus 32 l~~~~~~~~~kv~IlYgS~tGnte~~A~~La~~l~-~g~~v~v~~l~~~~ 80 (219)
T 3hr4_A 32 LMRKTMASRVRVTILFATETGKSEALAWDLGALFS-CAFNPKVVCMDKYR 80 (219)
T ss_dssp HHHHHHHTSCEEEEEEECSSSHHHHHHHHHHHHHT-TTSEEEEEEGGGCC
T ss_pred HHHHHHhcCCcEEEEEECCchHHHHHHHHHHHHHH-cCCCeEEEEcccCC
Confidence 44555566889999999999999999999999984 68899999887654
No 133
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=40.80 E-value=61 Score=25.09 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=36.4
Q ss_pred ceEEEEec---CC-CcccHHHHHHHHHHhhh----ccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVG---SP-IKHEKKVLEMIGRKLKK----NSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVG---SP-i~~dek~L~klaKkLKK----nnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--+|.|.+ .| ....-..|.++.+++++ .+|.|=.|++-... ++.+.+.+|++..
T Consensus 25 ~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~-d~~~~~~~~~~~~ 86 (164)
T 2ggt_A 25 WLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPER-DTKEAIANYVKEF 86 (164)
T ss_dssp EEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTT-CCHHHHHHHHHTT
T ss_pred EEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCC-CCHHHHHHHHHHc
Confidence 34666654 34 33456778889999987 37766666664433 4688999999865
No 134
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=40.47 E-value=28 Score=31.47 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=33.1
Q ss_pred cceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 35 QQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 35 ~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
++||++++.++.. --+.-+..|++.|++.+..|+|+++..
T Consensus 40 ~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~ 80 (416)
T 2x6q_A 40 GRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEG 80 (416)
T ss_dssp TCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred ccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 5899888888743 357788899999999999999998864
No 135
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=40.41 E-value=28 Score=28.78 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=27.9
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F 72 (332)
|||+||.+|+-..+++-...|++.|... .|+|+.+
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~--~v~i~~~ 35 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD--VADVHDI 35 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEEG
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC--ceEEEEc
Confidence 5899999999888999999999999765 3444444
No 136
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=39.89 E-value=14 Score=30.64 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=32.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
+||+||.+|+--.+++-...|++.|... +.|+++...+.
T Consensus 2 ~kilIiY~S~tGnT~~iA~~ia~~l~~~-~~v~~~~~~~~ 40 (182)
T 2wc1_A 2 AKIGLFFGSDTGTTRKIAKQIKDMFDDE-VMAKPLNVNRA 40 (182)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHTTSCTT-TBCCCEEGGGC
T ss_pred cEEEEEEECCCchHHHHHHHHHHHhccc-CceEEEEcccC
Confidence 4799999999888888889999999876 77888877543
No 137
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=39.53 E-value=85 Score=25.11 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=35.1
Q ss_pred ceEEEEecCCCc----ccHHHHHHHHHHhhhccc----eeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFVGSPIK----HEKKVLEMIGRKLKKNSV----ALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFVGSPi~----~dek~L~klaKkLKKnnV----avDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
+.+|||..++-. .....|.++.+++++.+| .|.||.+--.. .+.+.++.|++.-+
T Consensus 60 k~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~-~~~~~~~~~~~~~~ 122 (183)
T 3lwa_A 60 QVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD-YSRDIAQDFVTDNG 122 (183)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC-CCHHHHHHHHHHTT
T ss_pred CEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC-CCHHHHHHHHHHcC
Confidence 345555544433 466788999999999887 33444443222 26799999998764
No 138
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=39.24 E-value=26 Score=28.75 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred ceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEEecCCCCC----cHHHHHHHHHHHhcCC
Q 020031 36 QRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVNFGEDDEG----NTEKLEALLAAVNNND 94 (332)
Q Consensus 36 qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~FGe~~~~----n~~kL~~fi~~vN~~~ 94 (332)
|||+++.|||-. .+++-+..+++.|+..-|.+....+--.... ..+.+..+++.+...|
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD 65 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKAD 65 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTCEEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCS
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcceEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCC
Confidence 589999999984 4677777888888764433322222111101 1356777788775433
No 139
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=39.11 E-value=95 Score=26.59 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=37.4
Q ss_pred ceEEEEec---CCCcccHHHHHHHHHHhhhccceeeEEE---ecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFVG---SPIKHEKKVLEMIGRKLKKNSVALDIVN---FGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFVG---SPi~~dek~L~klaKkLKKnnVavDII~---FGe~~~~n~~kL~~fi~~vN 91 (332)
--+|.|.+ .|. ..-.+|.+|.++++..+|.|=-|+ ||..+....+.+.+|++.|.
T Consensus 40 vvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~ 100 (207)
T 2r37_A 40 YVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVR 100 (207)
T ss_dssp EEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTS
T ss_pred EEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcc
Confidence 34566654 455 456678999999998886655555 55444345688999999663
No 140
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=38.72 E-value=69 Score=25.87 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=36.1
Q ss_pred ceEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEec---CCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFG---EDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FG---e~~~~n~~kL~~fi~~v 90 (332)
--+|.|.++ |....-..|.++.++++..+|.|=.|++- ....++.+.+.+|++..
T Consensus 49 ~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~ 109 (183)
T 2obi_A 49 VCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGY 109 (183)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHc
Confidence 346666643 33356678899999998877766666542 22224678899998754
No 141
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=38.27 E-value=24 Score=27.57 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=35.1
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
--+|.|. |.|....-..|.++.+++++.+|.|=.|++ +..+.+..|++.-+
T Consensus 38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~-----d~~~~~~~~~~~~~ 92 (160)
T 1xvw_A 38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISV-----GPPPTHKIWATQSG 92 (160)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEES-----CCHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeC-----CCHHHHHHHHHhcC
Confidence 3577777 455555667788888888877766544444 24688999998864
No 142
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A*
Probab=38.23 E-value=1.5e+02 Score=23.52 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=46.7
Q ss_pred HHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC-CcHHHHHHHHHHHhcCCCc
Q 020031 18 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE-GNTEKLEALLAAVNNNDSS 96 (332)
Q Consensus 18 gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~-~n~~kL~~fi~~vN~~~~S 96 (332)
|.-...+|.+|. -..+|+|.+..+.. ....+++-.+.+= |..|+.+. -..+-.+.|.+.+....+.
T Consensus 126 g~~a~~~a~~~~-----~~~~v~~~~~~~~~-------~~~~~~~~~~P~l-~i~g~~D~~~~~~~~~~~~~~~~~~~~~ 192 (236)
T 1zi8_A 126 GALAFLVASKGY-----VDRAVGYYGVGLEK-------QLNKVPEVKHPAL-FHMGGQDHFVPAPSRQLITEGFGANPLL 192 (236)
T ss_dssp HHHHHHHHHHTC-----SSEEEEESCSSGGG-------CGGGGGGCCSCEE-EEEETTCTTSCHHHHHHHHHHHTTCTTE
T ss_pred HHHHHHHhccCC-----ccEEEEecCccccc-------chhhhhhcCCCEE-EEecCCCCCCCHHHHHHHHHHHHhCCCc
Confidence 334445555554 45677776665432 2234555555553 45676552 2366788899988765688
Q ss_pred eEEEeCCCCc
Q 020031 97 HLVHVPPGPN 106 (332)
Q Consensus 97 hlv~VP~G~~ 106 (332)
.++.+|.+.|
T Consensus 193 ~~~~~~~~~H 202 (236)
T 1zi8_A 193 QVHWYEEAGH 202 (236)
T ss_dssp EEEEETTCCT
T ss_pred eEEEECCCCc
Confidence 8988986655
No 143
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=38.10 E-value=62 Score=32.37 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 17 AGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 17 ~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
.|..+|+..+++-.. ....||+||+|+ -.+=-+=.-+|+.|+..++.|.|+.++..
T Consensus 35 Ag~a~a~~i~~~~~~-~~~~~v~VlcG~--GNNGGDGlv~AR~L~~~G~~V~v~~~~~~ 90 (502)
T 3rss_A 35 AGISVVLAMEEELGN-LSDYRFLVLCGG--GNNGGDGFVVARNLLGVVKDVLVVFLGKK 90 (502)
T ss_dssp HHHHHHHHHHHHHSC-CTTCEEEEEECS--SHHHHHHHHHHHHHTTTSSEEEEEECCSS
T ss_pred HHHHHHHHHHHhcCc-cCCCEEEEEECC--CCCHHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 357788877776432 245689999887 45556677899999999999999999875
No 144
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=38.04 E-value=74 Score=24.74 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=34.2
Q ss_pred eEEEEec---CCCcccHHHHHHHHHHhhhccceeeEEEec---CCCCCcHHHHHHHHH
Q 020031 37 RIIVFVG---SPIKHEKKVLEMIGRKLKKNSVALDIVNFG---EDDEGNTEKLEALLA 88 (332)
Q Consensus 37 RIIvFVG---SPi~~dek~L~klaKkLKKnnVavDII~FG---e~~~~n~~kL~~fi~ 88 (332)
-+|.|.+ .|....-..|.++.++++..+|.|=.|++- ....++.+.+..|+.
T Consensus 35 vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 92 (170)
T 2p5q_A 35 LLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVC 92 (170)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHH
T ss_pred EEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Confidence 4555553 344456778899999998877666555542 122246788999998
No 145
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=38.00 E-value=1.9e+02 Score=25.78 Aligned_cols=73 Identities=8% Similarity=0.115 Sum_probs=51.1
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHhh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLL 113 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l~ 113 (332)
.+-+..||. -|-.-+.+.++.|++-+|..|+-..+-+- +.++|..|++....++-.=||.+--|..-|.=++.
T Consensus 24 ~V~IimGS~--SD~~v~~~a~~~L~~~gI~~e~~V~SAHR--tp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvA 96 (181)
T 4b4k_A 24 LVGVIMGST--SDWETMKYACDILDELNIPYEKKVVSAHR--TPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVA 96 (181)
T ss_dssp SEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTTT--SHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHH
T ss_pred cEEEEECCH--hHHHHHHHHHHHHHHcCCCeeEEEEcccc--ChHHHHHHHHHHHhcCceEEEEeccccccchhhHH
Confidence 377888885 56777889999999999999988887655 78999999998765443344444333333444443
No 146
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=37.67 E-value=31 Score=30.08 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=42.6
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhcccee--eEEEecCC-----CCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVAL--DIVNFGED-----DEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVav--DII~FGe~-----~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
+||+..+......-|..+.+.||..++-| |++..|.. .+..+..+..|++.+...+.-..+.+|-|.
T Consensus 139 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d 212 (242)
T 3r3h_A 139 FIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIAD 212 (242)
T ss_dssp EEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSS
T ss_pred EEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccC
Confidence 55666665555566788889999998754 23333431 113467799999999876555555566653
No 147
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=37.44 E-value=75 Score=24.79 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=43.1
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEec
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~FG 73 (332)
+.+.|.++|.++=++-....+.-.......|.|++=.|-+.. | -..|..+.+++++.++.|=|++..
T Consensus 19 ~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 89 (130)
T 2kln_A 19 YRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVK 89 (130)
T ss_dssp EECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCS
T ss_pred EEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467888888887666554443322111134667777777762 2 467888888888888877666553
No 148
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=37.41 E-value=23 Score=31.93 Aligned_cols=44 Identities=5% Similarity=-0.026 Sum_probs=29.6
Q ss_pred cCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 29 RQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 29 RqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+.++...|||+++. .+..-...-+..|++.|++.+..|.||.-+
T Consensus 14 ~~~~~~~MrIl~~~-~~~~Gh~~~~~~la~~L~~~GheV~v~~~~ 57 (412)
T 3otg_A 14 GHIEGRHMRVLFAS-LGTHGHTYPLLPLATAARAAGHEVTFATGE 57 (412)
T ss_dssp ----CCSCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEECG
T ss_pred CCcccceeEEEEEc-CCCcccHHHHHHHHHHHHHCCCEEEEEccH
Confidence 45677788987655 444434444678999999999988888754
No 149
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=37.40 E-value=23 Score=30.59 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=41.1
Q ss_pred cceEEEEecCCCcc--cHHHHHHHHHHhhhccceee-EEEecCCCCCc--------HHHHHHHHHHHhcCCCceEEEe
Q 020031 35 QQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALD-IVNFGEDDEGN--------TEKLEALLAAVNNNDSSHLVHV 101 (332)
Q Consensus 35 ~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavD-II~FGe~~~~n--------~~kL~~fi~~vN~~~~Shlv~V 101 (332)
.+||++|+|||-.. +..-+..+++.++ .++.|+ +|..++..--+ .+.+..|++.+..-| .||.+
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD--~iVi~ 80 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAP-EGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATAD--AVVIV 80 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCC-TTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSS--EEEEE
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHcc-CCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCC--EEEEE
Confidence 47999999999864 4554556666665 678888 88776532111 245677888885433 44444
No 150
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=37.26 E-value=2.1e+02 Score=24.94 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=44.4
Q ss_pred eEEEEecCCCcc-cHHHHHHHHHHhhhccceee-EEEecCCCCCcHHHHHHHHHHHhc---------CC------CceEE
Q 020031 37 RIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALD-IVNFGEDDEGNTEKLEALLAAVNN---------ND------SSHLV 99 (332)
Q Consensus 37 RIIvFVGSPi~~-dek~L~klaKkLKKnnVavD-II~FGe~~~~n~~kL~~fi~~vN~---------~~------~Shlv 99 (332)
+|++|+|+--.. ..+.|++..++|++ .+. ++..|... .+.|+.++...+- .+ .++++
T Consensus 185 ~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~G~~~---~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~ 258 (364)
T 1f0k_A 185 RVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQSGKGS---QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVV 258 (364)
T ss_dssp EEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEECCTTC---HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEE
T ss_pred EEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEcCCch---HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEE
Confidence 344444553222 23556788888877 345 45577655 4677777766431 01 35666
Q ss_pred EeCCCCchhhHHhh-hcCcccC
Q 020031 100 HVPPGPNALSDVLL-STPIFTG 120 (332)
Q Consensus 100 ~VP~G~~~LsD~l~-sSpI~~g 120 (332)
.+|+|+..+.+++. -.|++.-
T Consensus 259 v~~sg~~~~~EAma~G~Pvi~~ 280 (364)
T 1f0k_A 259 VCRSGALTVSEIAAAGLPALFV 280 (364)
T ss_dssp EECCCHHHHHHHHHHTCCEEEC
T ss_pred EECCchHHHHHHHHhCCCEEEe
Confidence 66776655666654 4566653
No 151
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=37.25 E-value=35 Score=27.72 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=41.9
Q ss_pred ceEEEEecCCC----cccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCC-CceEEEe
Q 020031 36 QRIIVFVGSPI----KHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND-SSHLVHV 101 (332)
Q Consensus 36 qRIIvFVGSPi----~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~-~Shlv~V 101 (332)
--+|.|.++=. ...-..|.++.+++++.+-.|.||.+.-...++.+.|.+|++..+... +=||+..
T Consensus 30 ~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~ 100 (170)
T 3me7_A 30 PIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKA 100 (170)
T ss_dssp CEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEE
T ss_pred EEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeC
Confidence 45778887633 245677888888988744444555444321267899999999875432 3455543
No 152
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=37.24 E-value=90 Score=24.31 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=45.1
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+++.|.+.|.++=.+-.. |+. .. ..-|.|++=.|.+.. | -..|..+.++|++.++.|-|++.
T Consensus 24 ~~~~G~L~f~~a~~~~~~-l~~-~~--~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 89 (130)
T 4dgh_A 24 YALEGPFFFAAAETFERV-MGS-IQ--ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGA 89 (130)
T ss_dssp EECCSSCCHHHHHHHHHH-HHH-SS--SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred EEEeeeEeehhHHHHHHH-HHH-hc--cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 478999999988766654 332 11 234778888888873 3 47789999999999988877655
No 153
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=37.17 E-value=45 Score=27.39 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=36.2
Q ss_pred eEEEEe---cCCCcccHHHHHHHHHHhhhccceeeEEEe---cCCCCCcHHHHHHHHH
Q 020031 37 RIIVFV---GSPIKHEKKVLEMIGRKLKKNSVALDIVNF---GEDDEGNTEKLEALLA 88 (332)
Q Consensus 37 RIIvFV---GSPi~~dek~L~klaKkLKKnnVavDII~F---Ge~~~~n~~kL~~fi~ 88 (332)
-+|.|. |.|....-..|.++.++++..+|.|=-|++ |....++.+.+..|+.
T Consensus 49 vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~ 106 (187)
T 3dwv_A 49 LLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVC 106 (187)
T ss_dssp EEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCC
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHH
Confidence 345555 566667788999999999998876666653 3333256678888876
No 154
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=37.15 E-value=42 Score=30.19 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=32.6
Q ss_pred ceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 36 QRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 36 qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
++|+++.|||-. .+..-+..+.+.|++.+..|.++...+.
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 589999999985 3556667778889999999999998764
No 155
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=37.08 E-value=88 Score=29.92 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=45.7
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCc---HHHHHHHHHHHhcCCCceEEEeCCCCch
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKLEALLAAVNNNDSSHLVHVPPGPNA 107 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n---~~kL~~fi~~vN~~~~Shlv~VP~G~~~ 107 (332)
+-+-|+||||| ..++...+|..-|++.++.+.++...... +- .+.+...++.+.....--.+++--|..+
T Consensus 27 kp~~vv~I~s~--~~~~~~~~l~~~l~~~~i~~~~~~i~~~~-d~~~i~~~~~~l~~~~~~~~~~v~~N~TGGTK~ 99 (385)
T 1xmx_A 27 VSRHIIFIGDH--TQTVIYQRLSDVLNKRNISTDFFEIPAGS-NTSAIKSAIRELAETLKARGEEVKFNASCGLRH 99 (385)
T ss_dssp CCCEEEEEECG--GGHHHHHHHHHHHHHTTCEEEEEECCSSS-CHHHHHHHHHHHHHHHHHHTCEEEEECSSSCHH
T ss_pred CCCEEEEEECC--cHHHHHHHHHHHHHHcCCCceEEecCCcc-CHHHHHHHHHHHHHHhhccCCcEEEEeCCChHH
Confidence 44579999995 45677899999999999999999886544 21 3334555554422223345555556544
No 156
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=36.89 E-value=85 Score=25.65 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=36.7
Q ss_pred ceEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEec---CCCCCcHHHHHHHH-HHH
Q 020031 36 QRIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFG---EDDEGNTEKLEALL-AAV 90 (332)
Q Consensus 36 qRIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FG---e~~~~n~~kL~~fi-~~v 90 (332)
--+|.|.++ |....-..|.++.+++++.+|.|=.|++- .....+.+.+.+|+ +..
T Consensus 50 ~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~ 111 (190)
T 2vup_A 50 PLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKF 111 (190)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhc
Confidence 345666543 33356778899999999887776666543 22224678999999 665
No 157
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=36.76 E-value=49 Score=28.68 Aligned_cols=51 Identities=10% Similarity=-0.065 Sum_probs=37.4
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
--+|.|. |.|....-..|.++.+++++.+|.|=.|++ +..+.+.+|++...
T Consensus 58 ~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~-----D~~~~~~~~~~~~~ 112 (221)
T 2c0d_A 58 YCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISV-----DSVYSHLAWKNMPI 112 (221)
T ss_dssp EEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEES-----SCHHHHHHHHHSCG
T ss_pred eEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeC-----CCHHHHHHHHHHhh
Confidence 4577777 566667778899999999988876555554 34577899998763
No 158
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=36.69 E-value=43 Score=29.38 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=31.3
Q ss_pred cceEEEEecCCC---cc--cHHHHHHHHHHhhhc--cc-eeeEEEecCC
Q 020031 35 QQRIIVFVGSPI---KH--EKKVLEMIGRKLKKN--SV-ALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi---~~--dek~L~klaKkLKKn--nV-avDII~FGe~ 75 (332)
=+||+++.|||- .. +..-+..+.+.|++. +. .|.+|..++.
T Consensus 4 MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~ 52 (223)
T 3u7i_A 4 MNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDD 52 (223)
T ss_dssp CCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTS
T ss_pred cCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCC
Confidence 379999999997 43 455567788888876 47 8999988764
No 159
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=36.55 E-value=24 Score=31.62 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=30.0
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F 72 (332)
+.|||+ |+..|-.----=+..||+.|.+.+-.|-|++-
T Consensus 21 ~~MRIL-~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 21 QSMRAL-FITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp CCCEEE-EECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEE-EECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 358877 77888664455578999999999999988874
No 160
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=36.54 E-value=33 Score=28.24 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=36.1
Q ss_pred ceEEEEe----cCCCcc-cHHHHHHHHHHhhhccc-eeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFV----GSPIKH-EKKVLEMIGRKLKKNSV-ALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFV----GSPi~~-dek~L~klaKkLKKnnV-avDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.-||+|+ |.|... .-..|.++.+++++.+| .|=.|+. +..+.+.+|++..+
T Consensus 33 ~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~-----d~~~~~~~~~~~~~ 89 (167)
T 2wfc_A 33 KGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAV-----NDSFVMDAWGKAHG 89 (167)
T ss_dssp EEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEES-----SCHHHHHHHHHHTT
T ss_pred cEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeC-----CCHHHHHHHHHhcC
Confidence 3567777 334455 56778999999998888 6655554 24678999999764
No 161
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=36.33 E-value=1.8e+02 Score=26.12 Aligned_cols=85 Identities=13% Similarity=0.208 Sum_probs=52.3
Q ss_pred ccccceEEEEecCCCcc-cHHHHHHHHHHhhhcc-ceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhh
Q 020031 32 KKQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNS-VALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALS 109 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnn-VavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~Ls 109 (332)
...-.|||+++++|..+ .++-+..|-+-|++-+ |.+.++-.- .. +=.+-+..+.+.+.+..+.-+|++--|+++|+
T Consensus 31 ~~~~d~ViLv~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~~vd-~~-df~~~v~~i~~~i~~~~~~iivnlsGG~Ril~ 108 (244)
T 2wte_A 31 AQKEDSLVIVVPSPIVSGTRAAIESLRAQISRLNYPPPRIYEIE-IT-DFNLALSKILDIILTLPEPIISDLTMGMRMIN 108 (244)
T ss_dssp CCTTSEEEEEEESSCCHHHHHHHHHHHHHHHHHTCCCEEEEEEC-CC-SHHHHHHHHHHHHTTSCSSEEEECSSSCHHHH
T ss_pred CCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHcCCCceEEEEEC-Cc-cHHHHHHHHHHHHhhcCCcEEEEecCCchHHH
Confidence 33467999999999754 5666666666666554 355555441 11 12344455666665554577777888999765
Q ss_pred HHhhhcCcc
Q 020031 110 DVLLSTPIF 118 (332)
Q Consensus 110 D~l~sSpI~ 118 (332)
=.++-.-++
T Consensus 109 l~~l~A~~l 117 (244)
T 2wte_A 109 TLILLGIIV 117 (244)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 554444444
No 162
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=36.27 E-value=59 Score=26.74 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=36.8
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--||.|. |.|....-..|.++.+++++.+|.|=.|++ +..+.+.+|++..
T Consensus 47 ~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~-----d~~~~~~~~~~~~ 100 (195)
T 2bmx_A 47 WRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSI-----DSEFAHFQWRAQH 100 (195)
T ss_dssp EEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEES-----SCHHHHHHHHHHC
T ss_pred cEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEEC-----CCHHHHHHHHHHh
Confidence 4577777 556666778899999999988776655554 2367899999876
No 163
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=36.25 E-value=78 Score=24.71 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=35.0
Q ss_pred eEEEEe---cCC-CcccHHHHHHHHHHhhh----ccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFV---GSP-IKHEKKVLEMIGRKLKK----NSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFV---GSP-i~~dek~L~klaKkLKK----nnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
-+|.|. |.| ....-..|.++.+++++ .+|.|=.|++-... ++.+.+.+|++..
T Consensus 29 vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~-d~~~~~~~~~~~~ 89 (171)
T 2rli_A 29 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPER-DDVEAMARYVQDF 89 (171)
T ss_dssp EEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTT-CCHHHHHHHHHTT
T ss_pred EEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCC-CCHHHHHHHHHHc
Confidence 455555 445 33566778889999876 46665555554333 4688999998865
No 164
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=35.78 E-value=96 Score=28.22 Aligned_cols=41 Identities=5% Similarity=0.109 Sum_probs=33.8
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
.++|+++.+|+-..+++-...+++.|.+.++.++++...+.
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~ 291 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVS 291 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGS
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 36788889999878888888899999888888888877543
No 165
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=35.35 E-value=38 Score=24.08 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=29.2
Q ss_pred EEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 69 IVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 69 II~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
+|+.||.- ...+|+++...-||+.+.+|=-+.-.|
T Consensus 4 LvSiGEsF-g~~~rFQKINqMvnss~r~~KR~~d~~ 38 (46)
T 2aze_C 4 LVSIGESF-GTSEKFQKINQMVCNSDRVLKRSAEGS 38 (46)
T ss_dssp EEESSCTT-THHHHHHHHHHHHHCCTTCCCCCSTTC
T ss_pred Eeehhhhh-CchHHHHHHHHHHhhhhHhhhhhccCC
Confidence 68999988 788999999999999888876655544
No 166
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=35.14 E-value=2.4e+02 Score=24.97 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=55.0
Q ss_pred cccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCchhhHHh
Q 020031 33 KQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 112 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~l 112 (332)
+..-+|.++.||. -|-.-+.+.++.|++-+|..|+-..|=+- ..++|..|++.....+-.-||.+--+..-|.=++
T Consensus 10 ~~~P~V~IimGS~--SD~~v~~~a~~~l~~~gi~~ev~V~saHR--~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvv 85 (173)
T 4grd_A 10 HSAPLVGVLMGSS--SDWDVMKHAVAILQEFGVPYEAKVVSAHR--MPDEMFDYAEKARERGLRAIIAGAGGAAHLPGML 85 (173)
T ss_dssp CSSCSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTTT--SHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHH
T ss_pred CCCCeEEEEeCcH--hHHHHHHHHHHHHHHcCCCEEEEEEcccc--CHHHHHHHHHHHHhcCCeEEEEeccccccchhhh
Confidence 3345788999985 57777889999999999999998888665 7899999999886544344444443333344444
Q ss_pred h
Q 020031 113 L 113 (332)
Q Consensus 113 ~ 113 (332)
.
T Consensus 86 A 86 (173)
T 4grd_A 86 A 86 (173)
T ss_dssp H
T ss_pred e
Confidence 3
No 167
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=35.03 E-value=26 Score=28.26 Aligned_cols=35 Identities=11% Similarity=0.372 Sum_probs=27.1
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
..++|||+.+ .+....|++.|++.++.+-.+. |..
T Consensus 30 ~~~~lVF~~~-----~~~~~~l~~~L~~~~~~~~~~~-~~~ 64 (165)
T 1fuk_A 30 VTQAVIFCNT-----RRKVEELTTKLRNDKFTVSAIY-SDL 64 (165)
T ss_dssp CSCEEEEESS-----HHHHHHHHHHHHHTTCCEEEEC-TTS
T ss_pred CCCEEEEECC-----HHHHHHHHHHHHHcCCCEEEEE-CCC
Confidence 4689999965 5778999999999998876654 443
No 168
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=34.96 E-value=23 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=27.8
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..++|||+.+ .+....|++.|++.++.+-.+ .|...
T Consensus 31 ~~~~lVF~~~-----~~~~~~l~~~L~~~~~~~~~~-hg~~~ 66 (172)
T 1t5i_A 31 FNQVVIFVKS-----VQRCIALAQLLVEQNFPAIAI-HRGMP 66 (172)
T ss_dssp CSSEEEECSS-----HHHHHHHHHHHHHTTCCEEEE-CTTSC
T ss_pred CCcEEEEECC-----HHHHHHHHHHHHhcCCCEEEE-ECCCC
Confidence 4589999965 677889999999999888654 45443
No 169
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=41.06 E-value=8.2 Score=33.37 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=30.7
Q ss_pred ccceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEE-EecC
Q 020031 34 QQQRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIV-NFGE 74 (332)
Q Consensus 34 ~~qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII-~FGe 74 (332)
..+||++++|||-. .+.+-+..+++.+++ ++.|++| ...+
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i~dl~~ 47 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPLGSIGT 47 (199)
Confidence 45799999999975 356666667777776 8899988 7654
No 170
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=34.56 E-value=45 Score=32.25 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=43.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhc-cceeeEEEecCCCCCcHHHHHHHHHHHhc--CCCceEEEeCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPG 104 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKn-nVavDII~FGe~~~~n~~kL~~fi~~vN~--~~~Shlv~VP~G 104 (332)
+.+|+|+..|-.-.-.=+..|||.|... +..|-||+.-... +..++..+.. ..+-+|+.+|.+
T Consensus 6 ~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~------~~~~~~~~~~~~~~~i~~~~l~~~ 71 (480)
T 2vch_A 6 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP------PSKAQRTVLDSLPSSISSVFLPPV 71 (480)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSS------CC-CHHHHHC-CCTTEEEEECCCC
T ss_pred CcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcc------hhhhhhhhccccCCCceEEEcCCC
Confidence 3578888889877777799999999987 9999999874321 1122332222 246688888864
No 171
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=34.52 E-value=61 Score=25.63 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=42.2
Q ss_pred eEEEEecCCCcc------cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 37 RIIVFVGSPIKH------EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 37 RIIvFVGSPi~~------dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
+-|+|+|.=|.. ...--..|+++|+..+..+.|+|+|-....-...+..|-..+.. ..-.+|.|--|.
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~-~~pd~vvi~~G~ 76 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQ-YEPTHVLIELGA 76 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHH-HCCSEEEEECCH
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhh-cCCCEEEEEeec
Confidence 446777877764 23334677888888889999999998773333444444444432 123566665554
No 172
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=34.41 E-value=48 Score=31.47 Aligned_cols=54 Identities=6% Similarity=-0.100 Sum_probs=38.3
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
++|+|||.-..-.-..|++..++|++..-.+-++..|... ...+.|+.++...+
T Consensus 377 ~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g-~~~~~l~~~~~~~~ 430 (568)
T 2vsy_A 377 GVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPG-EADARLRAFAHAQG 430 (568)
T ss_dssp SCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCST-THHHHHHHHHHHTT
T ss_pred CEEEEeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCH-HHHHHHHHHHHHcC
Confidence 4777999866544467888888887766667788888323 35678888887764
No 173
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=34.31 E-value=17 Score=29.45 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=27.1
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
..++|||+.+ .+....|++.|++.++.+..+. |..
T Consensus 35 ~~~~lVF~~~-----~~~~~~l~~~L~~~~~~~~~~h-g~~ 69 (163)
T 2hjv_A 35 PDSCIIFCRT-----KEHVNQLTDELDDLGYPCDKIH-GGM 69 (163)
T ss_dssp CSSEEEECSS-----HHHHHHHHHHHHHTTCCEEEEC-TTS
T ss_pred CCcEEEEECC-----HHHHHHHHHHHHHcCCcEEEEe-CCC
Confidence 4589999864 5778999999999998886653 443
No 174
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=34.09 E-value=39 Score=33.16 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhcC----CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 15 LAAGIQVAQLALKHRQ----NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 15 ~~~gIqiA~LALKHRq----nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
|.-||.--.++|.++. .+....++-|||++--........+|+++|++++|.|++..-+ + .+|.+=+...
T Consensus 393 fa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~-----~-~~l~~q~k~A 466 (517)
T 4g85_A 393 LSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKK-----N-PKLLNQLQYC 466 (517)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSS-----S-CCHHHHHHHH
T ss_pred ccchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCC-----C-CCHHHHHHHH
Confidence 3335554455665542 2222334556666543445667899999999999999984321 1 2344444444
Q ss_pred hcCCCceEEEe
Q 020031 91 NNNDSSHLVHV 101 (332)
Q Consensus 91 N~~~~Shlv~V 101 (332)
+...-.++|+|
T Consensus 467 ~~~g~~~~vii 477 (517)
T 4g85_A 467 EEAGIPLVAII 477 (517)
T ss_dssp HHHCCCEEEEE
T ss_pred HHCCCCEEEEE
Confidence 44344455554
No 175
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=33.98 E-value=37 Score=32.32 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=27.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEE
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII 70 (332)
.++.|||.+--........+|+++|++++|.|++.
T Consensus 365 ~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~ 399 (464)
T 4g84_A 365 TETQVLVASAQKKLLEERLKLVSELWDAGIKAELL 399 (464)
T ss_dssp CCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 45566776644455677899999999999999874
No 176
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=33.88 E-value=1.1e+02 Score=26.55 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=35.8
Q ss_pred eEEEEec---CCCcccHHHHHHHHHHhhhccceeeEEE---ecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFVG---SPIKHEKKVLEMIGRKLKKNSVALDIVN---FGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFVG---SPi~~dek~L~klaKkLKKnnVavDII~---FGe~~~~n~~kL~~fi~~v 90 (332)
-+|.|.. .|.. .-.+|.+|.++++..++.|=-|+ ||..+....+.+.+|++.|
T Consensus 59 vll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~ 117 (215)
T 2i3y_A 59 ILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYV 117 (215)
T ss_dssp EEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHT
T ss_pred EEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhc
Confidence 4555654 4555 66778999999998876554444 4443324568899999865
No 177
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=33.76 E-value=82 Score=28.73 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=37.8
Q ss_pred hhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 27 KHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 27 KHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
-||...--.+||+ |+..|-.-.---+..||+.|++.+..|.|++-.. +.+.+ ... +.+++.+|.+
T Consensus 4 ~~~~~~m~~~~Il-~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~----~~~~~----~~~----g~~~~~~~~~ 68 (424)
T 2iya_A 4 EHRSASVTPRHIS-FFNIPGHGHVNPSLGIVQELVARGHRVSYAITDE----FAAQV----KAA----GATPVVYDSI 68 (424)
T ss_dssp -------CCCEEE-EECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGG----GHHHH----HHH----TCEEEECCCC
T ss_pred ccccCCcccceEE-EEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHH----HHHHH----HhC----CCEEEecCcc
Confidence 3555432234555 5677766666778999999999998888876532 23333 222 4567777654
No 178
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=33.71 E-value=30 Score=36.21 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=24.8
Q ss_pred HHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 53 LEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 53 L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
+..|.++|.+|||.+=+.+... .....+.|.+.+.
T Consensus 282 ~~ql~~~l~~~~I~~ifavt~~----~~~~y~~l~~~i~ 316 (687)
T 3k6s_B 282 VGQLAHKLAENNIQPIFAVTSR----MVKTYEKLTEIIP 316 (687)
T ss_dssp GGGHHHHHHHTTCBCCEEECGG----GHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCeEEEEEecc----chhhHHHHHhhcC
Confidence 6789999999999766655543 4455666666663
No 179
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=33.65 E-value=24 Score=42.36 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=32.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..=|+||-||=.+.-.+|.++|++++ ..+..|+.|...
T Consensus 2386 ~~PlifilspG~DP~~~l~~la~~~~---~~~~~iSlGqgq 2423 (2695)
T 4akg_A 2386 NNYFTMASERDVDGTFKLIELAKASK---ESLKIIPLGSIE 2423 (2695)
T ss_dssp CSEEEEEECTTCCTHHHHHHHHHTTT---CCCCEEECCSHH
T ss_pred CCeEEeeCCCCCCchHHHHHHHHHhC---CCcEEEecCCCc
Confidence 44589999999888999999999975 468899999754
No 180
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=33.57 E-value=2e+02 Score=24.21 Aligned_cols=69 Identities=9% Similarity=0.046 Sum_probs=38.9
Q ss_pred ccceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCCc
Q 020031 34 QQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPN 106 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~~ 106 (332)
.+.+.|.||-..+.. -..-+.-+-+.+++.++.+.++.... +.++...+++.+-...-.-+|.+|..+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN----SRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS----CHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC----CHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 344556665554442 24445667777888899888776542 3345555555554444455666666543
No 181
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.46 E-value=8.9 Score=35.66 Aligned_cols=19 Identities=53% Similarity=0.732 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHhcccCC
Q 020031 247 VAEDDPELALALQLSMQDG 265 (332)
Q Consensus 247 ~~~Eee~ia~AlqmSmq~~ 265 (332)
+...|++||.||+|||++.
T Consensus 221 dp~~dpela~alr~s~eee 239 (268)
T 4b4t_W 221 DPSMDPELAMALRLSMEEE 239 (268)
T ss_dssp -------------------
T ss_pred CCCCCHHHHHHHHHhHHHH
Confidence 4566889999999999864
No 182
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=33.20 E-value=37 Score=26.93 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=34.5
Q ss_pred eEEEEe-c---CCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFV-G---SPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFV-G---SPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
-||.|. + .|....-..|.++.+++++.+|.|=.|+. ++.+.+.+|++..+
T Consensus 32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~-----d~~~~~~~~~~~~~ 85 (161)
T 3drn_A 32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSS-----DDINSHKRFKEKYK 85 (161)
T ss_dssp EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEES-----CCHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeC-----CCHHHHHHHHHHhC
Confidence 466676 2 23345677889999999988765544444 34789999998763
No 183
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=33.02 E-value=22 Score=29.53 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=31.5
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
++|+||.+|+--.+++-...|++.|.. ++.|+++.+-+
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~~~v~~~~~~~ 38 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-ETMSDALNVNR 38 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-TTBCCCEEGGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-CCceEEEEhhh
Confidence 479999999988889888999999976 46778887654
No 184
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=32.92 E-value=49 Score=28.95 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=30.8
Q ss_pred ceEEEEecC-------------CC--cccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGS-------------PI--KHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGS-------------Pi--~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+||+++..+ |. .-.+.-+..|++.|.+.+..|.||......
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~ 59 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSP 59 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSC
T ss_pred cEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 677777666 12 235778899999999999999999887543
No 185
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=32.71 E-value=2.4e+02 Score=25.17 Aligned_cols=58 Identities=10% Similarity=0.221 Sum_probs=44.1
Q ss_pred ccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcC
Q 020031 32 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNN 93 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~ 93 (332)
.+|--++.++.||. -|-.-+.+.++.|++-+|..|+-..|=+- ..++|..|++.....
T Consensus 10 ~~~~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR--~p~~l~~~~~~a~~~ 67 (183)
T 1o4v_A 10 HHHVPRVGIIMGSD--SDLPVMKQAAEILEEFGIDYEITIVSAHR--TPDRMFEYAKNAEER 67 (183)
T ss_dssp ----CEEEEEESCG--GGHHHHHHHHHHHHHTTCEEEEEECCTTT--CHHHHHHHHHHTTTT
T ss_pred ccCCCeEEEEeccH--HHHHHHHHHHHHHHHcCCCeEEEEEcccC--CHHHHHHHHHHHHhC
Confidence 34556788888986 56777888999999999999998888544 789999999877543
No 186
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=32.71 E-value=62 Score=25.20 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=41.9
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+++.|...|.++=.+-.-..+.. ...|.|++=.|.+.. | -..|..+.++|++ ++.|=|++.
T Consensus 21 ~~l~G~L~f~~a~~l~~~l~~~~----~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~ 85 (118)
T 3ny7_A 21 LRVIGPLFFAAAEGLFTDLESRL----EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNV 85 (118)
T ss_dssp EEEESCBCHHHHHHHHHHHHTTC----TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECC
T ss_pred EEEeceeEehhHHHHHHHHHHhc----CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecC
Confidence 47899999999877555433322 134667776676652 3 4778999999999 887766643
No 187
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=32.68 E-value=40 Score=27.78 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=38.0
Q ss_pred cceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 35 QQRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
+--||.|. |.|....-..|.++.+++++.+|.|=.|++ +..+.+.+|++.+..
T Consensus 34 k~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----d~~~~~~~~~~~~~~ 90 (198)
T 1zof_A 34 NGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSI-----DSEQVHFAWKNTPVE 90 (198)
T ss_dssp SEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEES-----SCHHHHHHHHTSCGG
T ss_pred CcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEEC-----CCHHHHHHHHHhhhh
Confidence 34577777 456667788899999999988766555543 235788999987643
No 188
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=32.09 E-value=1.2e+02 Score=30.23 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=55.6
Q ss_pred HHHHHh-hhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceee-----EEEecCCCCCcHHHHHHHHHHHhcCC
Q 020031 21 VAQLAL-KHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALD-----IVNFGEDDEGNTEKLEALLAAVNNND 94 (332)
Q Consensus 21 iA~LAL-KHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavD-----II~FGe~~~~n~~kL~~fi~~vN~~~ 94 (332)
...+|- .||.-+-...--|+|+|+|+.-+++...++-.+|.+.++.|- -|.|--+. ..+-|..|++.++
T Consensus 323 l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~SgHa--~~~eL~~~i~~~~--- 397 (562)
T 3bk2_A 323 LHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHA--SQEELKLILNLTT--- 397 (562)
T ss_dssp HHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCCSSC--CHHHHHHHHHHHC---
T ss_pred HHhhhhcccccccCCCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEeCCC--CHHHHHHHHHhcC---
Confidence 445554 577665566678999999999988888888888888776642 12343333 4677999999994
Q ss_pred CceEEEeCCC
Q 020031 95 SSHLVHVPPG 104 (332)
Q Consensus 95 ~Shlv~VP~G 104 (332)
..+++.|---
T Consensus 398 Pk~vipvHGe 407 (562)
T 3bk2_A 398 PRFFLPWHGE 407 (562)
T ss_dssp CSEEEEESBC
T ss_pred CCEEEEEcCC
Confidence 5677777543
No 189
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=32.02 E-value=47 Score=29.16 Aligned_cols=38 Identities=8% Similarity=0.060 Sum_probs=26.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
+||+++ +.+..-...-+..|++.|++.+..|.||..+.
T Consensus 7 mkIl~~-~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVM-AGGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred cEEEEE-eCCCccchhHHHHHHHHHHHcCCEEEEEecCC
Confidence 566555 44444455556788888888888888887654
No 190
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=31.99 E-value=60 Score=29.99 Aligned_cols=42 Identities=10% Similarity=0.209 Sum_probs=33.4
Q ss_pred ccceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 34 QQQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
+.|||+|.+|+|-.. +..-+....+.|++.+..|.|+...+.
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~ 64 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAM 64 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 468999999999754 345557788899999999999987653
No 191
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=31.82 E-value=24 Score=30.16 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=27.8
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..++|||+.+ .+....|++.|++.++.+-.+ .|...
T Consensus 31 ~~~~lVF~~~-----~~~~~~l~~~L~~~~~~~~~l-hg~~~ 66 (212)
T 3eaq_A 31 PDRAMVFTRT-----KAETEEIAQGLLRLGHPAQAL-HGDLS 66 (212)
T ss_dssp CSCEEEECSS-----HHHHHHHHHHHHHHTCCEEEE-CSSSC
T ss_pred CCeEEEEeCC-----HHHHHHHHHHHHHcCCCEEEE-ECCCC
Confidence 4699999975 677888999999999888665 45443
No 192
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=31.40 E-value=1.3e+02 Score=23.26 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=35.7
Q ss_pred ceEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEec---CCCCCcHHHHHHHH-HHH
Q 020031 36 QRIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFG---EDDEGNTEKLEALL-AAV 90 (332)
Q Consensus 36 qRIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FG---e~~~~n~~kL~~fi-~~v 90 (332)
--+|.|.++ |....-..|.++.++++..+|.|=.|++- .......+.+..|+ +..
T Consensus 33 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T 2v1m_A 33 VCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKY 94 (169)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred EEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhc
Confidence 345666543 33356677889999998887776666642 22224578899994 665
No 193
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=31.30 E-value=99 Score=26.26 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=36.7
Q ss_pred eEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEe---cCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNF---GEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~F---Ge~~~~n~~kL~~fi~~vN 91 (332)
-+|.|.+| |....-..|.+|.++++..+|.|=-|++ |.....+.+.+.+|++.++
T Consensus 50 vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~ 110 (208)
T 2f8a_A 50 LLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVR 110 (208)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTS
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcc
Confidence 45666644 4444567789999999988776655554 2222245688999998664
No 194
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=31.17 E-value=40 Score=28.44 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=30.3
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC-CcHHHHHHHH
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE-GNTEKLEALL 87 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~-~n~~kL~~fi 87 (332)
.++|||+.+ .+.+..|++.|++.++.+..+ .|.... +-...|+.|-
T Consensus 55 ~~~lVF~~~-----~~~~~~l~~~L~~~g~~~~~l-hg~~~~~~R~~~l~~F~ 101 (191)
T 2p6n_A 55 PPVLIFAEK-----KADVDAIHEYLLLKGVEAVAI-HGGKDQEERTKAIEAFR 101 (191)
T ss_dssp SCEEEECSC-----HHHHHHHHHHHHHHTCCEEEE-CTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECC-----HHHHHHHHHHHHHcCCcEEEE-eCCCCHHHHHHHHHHHh
Confidence 479999865 577888999999998887654 454331 1233455553
No 195
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=31.09 E-value=1e+02 Score=24.93 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=29.2
Q ss_pred cCCCcccHHHHHHHHHHhhhccceeeEEEecCC-C------CCcHHHHHHHHHHH
Q 020031 43 GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGED-D------EGNTEKLEALLAAV 90 (332)
Q Consensus 43 GSPi~~dek~L~klaKkLKKnnVavDII~FGe~-~------~~n~~kL~~fi~~v 90 (332)
|+++..-+..+..+...|...+..|-||.|+.. . ..+...+..++..+
T Consensus 20 ~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l 74 (189)
T 2x31_A 20 VARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGL 74 (189)
T ss_dssp C--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcC
Confidence 455555666677777777667788889999852 1 12344555555544
No 196
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=31.09 E-value=41 Score=29.76 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=31.7
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHH
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEAL 86 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~f 86 (332)
..++|||+.+ .+....+++.|++.++.+-++.=+-...+....++.|
T Consensus 243 ~~~~lvf~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 289 (395)
T 3pey_A 243 IGSSIIFVAT-----KKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289 (395)
T ss_dssp SSEEEEECSC-----HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEeCC-----HHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH
Confidence 4689999864 6788999999999998876654332221223445555
No 197
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=30.96 E-value=65 Score=28.87 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=27.5
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
...|+|||+-+ .+.+..|++.|++.++.+-.+.
T Consensus 360 ~~~k~lVF~~~-----~~~~~~l~~~L~~~~~~~~~~~ 392 (494)
T 1wp9_A 360 QNSKIIVFTNY-----RETAKKIVNELVKDGIKAKRFV 392 (494)
T ss_dssp TTCCEEEECSC-----HHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCeEEEEEcc-----HHHHHHHHHHHHHcCCCcEEEe
Confidence 46799999876 6889999999999998876654
No 198
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=30.85 E-value=54 Score=28.44 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=28.9
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
.+||++.|+.-+..-+ ...|.++|+|.++.|.||.
T Consensus 5 ~k~IllgvTGs~aa~k--~~~ll~~L~~~g~~V~vv~ 39 (175)
T 3qjg_A 5 GENVLICLCGSVNSIN--ISHYIIELKSKFDEVNVIA 39 (175)
T ss_dssp CCEEEEEECSSGGGGG--HHHHHHHHTTTCSEEEEEE
T ss_pred CCEEEEEEeCHHHHHH--HHHHHHHHHHCCCEEEEEE
Confidence 4799999988776553 7788999999999999886
No 199
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=30.79 E-value=66 Score=25.45 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=45.4
Q ss_pred cccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+.+.|.+.|.++=.+-..-.+. ...-|.|++=.|.+.. | -..|..+.++|++.++.|-|++.
T Consensus 27 ~~l~G~L~f~~a~~~~~~l~~~----~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 92 (135)
T 4dgf_A 27 YEINGPFFFGVADRLKGVLDVI----EETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGV 92 (135)
T ss_dssp EECCSSBSHHHHHHHTTGGGGC----SSCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESC
T ss_pred EEeeceEEehhHHHHHHHHHHh----cCCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4789999999886655432222 1345778888888873 4 47789999999999998877755
No 200
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=30.74 E-value=72 Score=24.29 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.....|.++.+++++.+|.|=.|++. .+.+.+..|++..+
T Consensus 45 ~~~~~l~~l~~~~~~~~~~~v~v~~d----~~~~~~~~~~~~~~ 84 (152)
T 3gl3_A 45 QSFPWMNQMQAKYKAKGFQVVAVNLD----AKTGDAMKFLAQVP 84 (152)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEECC----SSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEECC----CCHHHHHHHHHHcC
Confidence 45677899999999888665555543 34688899988764
No 201
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=30.60 E-value=91 Score=27.46 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-.....+..-||||+|-.. ..+--+ ..|++.|.+.+|.|-.|.-|-..
T Consensus 133 vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~ 211 (272)
T 4dyv_A 133 TNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNAD 211 (272)
T ss_dssp HHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC
T ss_pred hccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECccc
Confidence 46667778888888875322222345677777422 133333 34567777889999999999766
No 202
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=30.46 E-value=69 Score=33.94 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=44.4
Q ss_pred cccceEEEEecCCCcc-cHHHHHHHHHHhhhccceeeEEEecCCCC---------CcHHHHHHHHHHHhcCCCceE
Q 020031 33 KQQQRIIVFVGSPIKH-EKKVLEMIGRKLKKNSVALDIVNFGEDDE---------GNTEKLEALLAAVNNNDSSHL 98 (332)
Q Consensus 33 ~~~qRIIvFVGSPi~~-dek~L~klaKkLKKnnVavDII~FGe~~~---------~n~~kL~~fi~~vN~~~~Shl 98 (332)
.....+|+|||..... .-..|++..++|++..-.+-+|..|.... ...+.|..+++..+-.++-+|
T Consensus 569 ~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~f 644 (816)
T 3s28_A 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRW 644 (816)
T ss_dssp CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEE
T ss_pred CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEE
Confidence 3456799999996653 56778999999988666677788887551 024567777776643333333
No 203
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=30.31 E-value=54 Score=26.83 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=34.1
Q ss_pred eEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
-+|+|. |.|....-..|.++.++++..+|.|=.|+. +..+.+.+|++.-
T Consensus 54 vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~-----D~~~~~~~~~~~~ 106 (179)
T 3ixr_A 54 LVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSR-----DSVKSHDSFCAKQ 106 (179)
T ss_dssp EEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC-----CCHHHHHHHHHHc
Confidence 355665 233445677899999999988876544443 3568899999876
No 204
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=30.18 E-value=64 Score=28.52 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=31.3
Q ss_pred ccceEEEEecCCC---cccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 34 QQQRIIVFVGSPI---KHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 34 ~~qRIIvFVGSPi---~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
..+||+++...+. .-.+.-+..|++.|++.+..|.||......
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 64 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPH 64 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTT
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCcc
Confidence 4577766665432 235678899999999999999999987654
No 205
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=30.07 E-value=47 Score=26.42 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=23.4
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
|++|+|+|-|=.--.-....|+++|...++.+-++..|
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 45777777775443334456777777666666666543
No 206
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=30.02 E-value=1.5e+02 Score=22.57 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.....|.++.+++++.+|.|=.|++. .+.+.+..|++..+
T Consensus 43 ~~~~~l~~~~~~~~~~~v~vv~v~~d----~~~~~~~~~~~~~~ 82 (151)
T 2f9s_A 43 KEFPYMANQYKHFKSQGVEIVAVNVG----ESKIAVHNFMKSYG 82 (151)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEES----CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECC----CCHHHHHHHHHHcC
Confidence 45677889999998888877667664 34588999998774
No 207
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=30.01 E-value=96 Score=28.65 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=18.4
Q ss_pred CCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHH
Q 020031 45 PIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAA 89 (332)
Q Consensus 45 Pi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~ 89 (332)
|...+-+.+..+.+.+|+.++.|- ++-|.. +.++|+.|.++
T Consensus 128 p~~~~~~~l~~ll~~ik~~g~~i~-~t~G~l---~~e~l~~L~~a 168 (369)
T 1r30_A 128 PHERDMPYLEQMVQGVKAMGLEAC-MTLGTL---SESQAQRLANA 168 (369)
T ss_dssp CCTTTHHHHHHHHHHHHHTTSEEE-EECSSC---CHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCeEE-EecCCC---CHHHHHHHHHC
Confidence 333344445555555555544443 344432 23445544443
No 208
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=29.99 E-value=78 Score=25.03 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=28.7
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.+||++.-|+=+....=-..+|-+.+++.+|.++|-.++-..
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~ 62 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE 62 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTT
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHH
Confidence 346777666666655444578888899999887776665443
No 209
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=29.97 E-value=1.2e+02 Score=23.03 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=33.8
Q ss_pred eEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
-||.|.++ +.......|.++.++++..+|.|=.|++. . ++.+.+..|++..+
T Consensus 31 ~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~--~-~~~~~~~~~~~~~~ 85 (153)
T 2l5o_A 31 TLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQP--I-DPIESVRQYVKDYG 85 (153)
T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECT--T-SCHHHHHHHHHHTT
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecC--C-CCHHHHHHHHHHcC
Confidence 45555533 22345667888899988877665555543 3 45788999988753
No 210
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=29.79 E-value=59 Score=25.03 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=36.0
Q ss_pred eEEEEe---cCCCccc-HHHHHHHHHHhhhccceeeEEEec--CCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFV---GSPIKHE-KKVLEMIGRKLKKNSVALDIVNFG--EDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFV---GSPi~~d-ek~L~klaKkLKKnnVavDII~FG--e~~~~n~~kL~~fi~~vN 91 (332)
-||.|. |.|.... -..|.++.++++..+|.|=-|++- ....++.+.+..|++..+
T Consensus 33 vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (160)
T 3lor_A 33 VVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFG 93 (160)
T ss_dssp EEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTT
T ss_pred EEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcC
Confidence 345555 3344454 778999999998877665555542 111256899999999764
No 211
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=29.60 E-value=16 Score=33.66 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=22.4
Q ss_pred CCCcccHHHHHHHHHHhhhc-cceeeEEEecCCC
Q 020031 44 SPIKHEKKVLEMIGRKLKKN-SVALDIVNFGEDD 76 (332)
Q Consensus 44 SPi~~dek~L~klaKkLKKn-nVavDII~FGe~~ 76 (332)
+|... .+-|..+.+.|+|. ++.|.||.|.+-.
T Consensus 14 ~~~p~-~~il~~v~~~l~k~~Gi~veiv~F~Dy~ 46 (245)
T 3up9_A 14 TPSPH-AKILTYINDNLAADAGIKLDIVEYTDYV 46 (245)
T ss_dssp CTTTH-HHHHHHHHHHTHHHHTEEEEEEECSSSH
T ss_pred eCCCh-HHHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 55533 23566777788774 9999999996543
No 212
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=29.57 E-value=75 Score=25.96 Aligned_cols=51 Identities=14% Similarity=-0.039 Sum_probs=37.3
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
--||.|. |.|....-..|.++.+++++.+|.|=.|+. +..+.+.+|++...
T Consensus 33 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~-----d~~~~~~~~~~~~~ 87 (192)
T 2h01_A 33 YVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSV-----DSKFTHLAWKKTPL 87 (192)
T ss_dssp EEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEES-----SCHHHHHHHHTSCG
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEe-----CCHHHHHHHHHhHH
Confidence 4577777 566667788899999999987776554543 24678899988764
No 213
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.46 E-value=45 Score=26.58 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=26.7
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
++|+|+|-|=.--.-....|+++|.+.++.+.+|.+|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 5788888775544445577888888888777788765
No 214
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.39 E-value=1.7e+02 Score=24.83 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=37.8
Q ss_pred HHHHHHHhhhcCCccccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEE-EecCCCCCcHHHHHHHHH
Q 020031 19 IQVAQLALKHRQNKKQQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIV-NFGEDDEGNTEKLEALLA 88 (332)
Q Consensus 19 IqiA~LALKHRqnK~~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII-~FGe~~~~n~~kL~~fi~ 88 (332)
.+.+.+|.+|=. ..++||.++.|.+-. .....+.-.-+-|++.++.++.. ..|+.. .+.++.|+.
T Consensus 108 ~~~g~~a~~~L~--~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~l~ 174 (277)
T 3hs3_A 108 TKGGKESIKLLS--KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLEETPENNP---YISAQSALN 174 (277)
T ss_dssp HHHHHHHHHTSC--TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCCCccCCch---HHHHHHHHc
Confidence 345566666666 344577666665433 24455666677789999888774 333222 444444444
No 215
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=29.02 E-value=1e+02 Score=27.04 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc------------ccHHHH----HHHHHHhhhccceeeEEEecC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK------------HEKKVL----EMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~------------~dek~L----~klaKkLKKnnVavDII~FGe 74 (332)
+|+...+.+.+.+++|-... +..-||||+|... ..+--+ ..|++.|++.+|.|-.|+-|-
T Consensus 123 vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~ 198 (285)
T 3sc4_A 123 IQVRGTYAVSQSCIPHMKGR--DNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRT 198 (285)
T ss_dssp HHHHHHHHHHHHHGGGTTTS--SSCEEEECCCCCCCSGGGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSS
T ss_pred HHhHHHHHHHHHHHHHHHHc--CCcEEEEECChhhccCCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCC
Confidence 67778888999999885322 2345677877321 123333 456777888899999999994
No 216
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=28.98 E-value=1.3e+02 Score=29.23 Aligned_cols=72 Identities=11% Similarity=0.253 Sum_probs=46.3
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe--cCCCCCcHHHHHHHHHHHhcCC---CceEEEeCCCCchhh
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF--GEDDEGNTEKLEALLAAVNNND---SSHLVHVPPGPNALS 109 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F--Ge~~~~n~~kL~~fi~~vN~~~---~Shlv~VP~G~~~Ls 109 (332)
.+|+++..+.-+.. .-+.++.+.|++.++.+.++.| ||.. .+.+.++..++.+.... .+-+|-|=-| ...
T Consensus 62 ~~rvlIVtd~~v~~--~~~~~v~~~L~~~g~~~~~~~~~~gE~~-kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG--sv~ 136 (390)
T 3okf_A 62 KQKVVIVTNHTVAP--LYAPAIISLLDHIGCQHALLELPDGEQY-KTLETFNTVMSFLLEHNYSRDVVVIALGGG--VIG 136 (390)
T ss_dssp TCEEEEEEETTTHH--HHHHHHHHHHHHHTCEEEEEEECSSGGG-CBHHHHHHHHHHHHHTTCCTTCEEEEEESH--HHH
T ss_pred CCEEEEEECCcHHH--HHHHHHHHHHHHcCCeEEEEEECCCcCC-chHHHHHHHHHHHHhcCCCcCcEEEEECCc--HHh
Confidence 45666666555442 2678888999999999998877 4444 56777777777765432 2455555444 345
Q ss_pred HH
Q 020031 110 DV 111 (332)
Q Consensus 110 D~ 111 (332)
|.
T Consensus 137 D~ 138 (390)
T 3okf_A 137 DL 138 (390)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 217
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=28.69 E-value=81 Score=24.89 Aligned_cols=66 Identities=9% Similarity=0.114 Sum_probs=40.2
Q ss_pred cccCccccHHHHHHHHHHHhhhcC-CccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALKHRQ-NKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALKHRq-nK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+.+.|.++|.++=.+-....+.-. +....-|.|++=+|.+.. | -..|..+.++|++.++.|-|++.
T Consensus 34 ~~~~G~L~f~~a~~~~~~l~~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 104 (143)
T 3llo_A 34 FQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGC 104 (143)
T ss_dssp EEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESC
T ss_pred EEeCCCeEechHHHHHHHHHHHHccCCCCCceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 477888888887655443332221 111244667777787763 3 36788888999998887766643
No 218
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=28.66 E-value=53 Score=29.09 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=27.2
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhh-ccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKK-NSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKK-nnVavDII~ 71 (332)
.+||++.|+.-+..-+ ...|.++|+| .++.|.||.
T Consensus 19 ~k~IllgvTGsiaa~k--~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALK--LPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGGGGT--HHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHHHHH--HHHHHHHHhcccCCEEEEEE
Confidence 5799999988887554 4788899999 899999885
No 219
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=28.33 E-value=58 Score=28.29 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=28.5
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
.+||++.|+.-+..- ....|.++|+|.++.|.||.
T Consensus 2 ~k~IllgvTGs~aa~--k~~~l~~~L~~~g~~V~vv~ 36 (181)
T 1g63_A 2 YGKLLICATASINVI--NINHYIVELKQHFDEVNILF 36 (181)
T ss_dssp CCCEEEEECSCGGGG--GHHHHHHHHTTTSSCEEEEE
T ss_pred CCEEEEEEECHHHHH--HHHHHHHHHHHCCCEEEEEE
Confidence 368999998777655 36788999999999999885
No 220
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=28.26 E-value=1.2e+02 Score=23.55 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=46.1
Q ss_pred cccCccccHHHHHHHHHHHhh-hcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 7 LEIGGELNLAAGIQVAQLALK-HRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 7 i~i~G~~~~~~gIqiA~LALK-HRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
+.+.|.++|.++-.+-....+ ... + ..|.|+|=.|.+.. | -.-|..+.+++++.++.+-|++.
T Consensus 25 v~l~G~Ld~~~a~~l~~~l~~~~~~-~--~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~ 92 (125)
T 2ka5_A 25 LMPNKELNIENAHLFKKWVFDEFLN-K--GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSP 92 (125)
T ss_dssp ECCCSCCSGGGTHHHHHHHHHHTTT-T--TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEEecEEecccHHHHHHHHHHHHhh-C--CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 578999999987766665544 322 1 24668888888873 4 45678999999999988887765
No 221
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=27.99 E-value=2.7e+02 Score=23.41 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhc-cceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 50 KKVLEMIGRKLKKN-SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 50 ek~L~klaKkLKKn-nVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
..-+.-+-+.+++. +..|.|+..+... .+.++...+++.+....-.=+|.+|..+
T Consensus 25 ~~~~~gi~~~a~~~~g~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSDFNISANITHYDP-YDYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp HHHHHHHHHHHHHTGGGCEEEEEEEECS-SCHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC-CCHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 34445566667776 7777777655433 4567777777777655555677777643
No 222
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=27.91 E-value=52 Score=28.87 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=29.1
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
.+||++.|+.-+..-+ ...|.++|+|.++.|.||.
T Consensus 8 ~k~IllgvTGs~aa~k--~~~l~~~L~~~g~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVG--ISSYLLYFKSFFKEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGG--THHHHHHHTTTSSEEEEEE
T ss_pred CCEEEEEEECHHHHHH--HHHHHHHHHHCCCEEEEEE
Confidence 4689999988887653 6788899999999999885
No 223
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=27.82 E-value=1.1e+02 Score=24.45 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=34.7
Q ss_pred eEEEEecCC---CcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGSP---IKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGSP---i~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
-+|.|.++= .......|.++.+++++.+|.|=.|++... ..+.+..|++..+
T Consensus 63 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~---~~~~~~~~~~~~~ 117 (186)
T 1jfu_A 63 LLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTR---DPEKPKTFLKEAN 117 (186)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCS---CTTHHHHHHHHTT
T ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCC---CHHHHHHHHHHcC
Confidence 455665432 234567788899999877877766776532 2467888988764
No 224
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=27.70 E-value=92 Score=26.31 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=37.9
Q ss_pred eEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEecCCC---CCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD---EGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FGe~~---~~n~~kL~~fi~~vN 91 (332)
-+|.|.++ |....-..|.+|.++++..+|.|=.|++.... .++.+.+.+|++..+
T Consensus 62 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~ 122 (218)
T 3u5r_E 62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYG 122 (218)
T ss_dssp EEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHT
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhC
Confidence 34555543 22456788999999999888776666664321 156899999998874
No 225
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=26.99 E-value=1.1e+02 Score=30.34 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhcCCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 18 GIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 18 gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|..+|+..+++-. ...||+||+|+ -.+=-+=.-+|+.|+.. +.|.|+..++..
T Consensus 32 g~ava~~i~~~~~---~~~~v~VlcG~--GNNGGDGlv~AR~L~~~-~~V~v~~~~~~~ 84 (475)
T 3k5w_A 32 AMALERAVLQNAS---LGAKVIILCGS--GDNGGDGYALARRLVGR-FRVLVFEMKLTK 84 (475)
T ss_dssp HHHHHHHHHTTSC---TTCEEEEEECS--SHHHHHHHHHHHHHBTT-BEEEEEESSCCC
T ss_pred HHHHHHHHHHHcC---CCCeEEEEECC--CCCHHHHHHHHHHHHcC-CceEEEEeCCCC
Confidence 5677887776643 35689999987 45556677899999977 999999888654
No 226
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=26.92 E-value=1.1e+02 Score=25.49 Aligned_cols=63 Identities=25% Similarity=0.234 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHHH----HHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVLE----MIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L~----klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.++++-..+ ....-|+|++|... ..+--++ .+++.+++.+|.|-+|..|-..
T Consensus 106 ~N~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~ 183 (244)
T 3d3w_A 106 VNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVM 183 (244)
T ss_dssp HHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBT
T ss_pred HHhHHHHHHHHHHHHHHHhC-CCCcEEEEeCchhhccCCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecccc
Confidence 45566677788888764211 11345778887532 1343333 4556666779999999998765
No 227
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=26.70 E-value=1.3e+02 Score=22.72 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=33.7
Q ss_pred eEEEEe---cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFV---GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFV---GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
-||.|. |.|.......|.++.++++..+|.|=.|++. .+.+.+..|+...+
T Consensus 33 ~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d----~~~~~~~~~~~~~~ 86 (152)
T 2lja_A 33 IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCD----KNKKAWENMVTKDQ 86 (152)
T ss_dssp EEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECC----SCHHHHHHHHHHHT
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEcc----CcHHHHHHHHHhcC
Confidence 455554 3344456778889999888766665555543 34578899988764
No 228
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=26.58 E-value=65 Score=23.96 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=44.1
Q ss_pred ccccCccccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-c---HHHHHHHHHHhhhccceeeEEEe
Q 020031 6 GLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-E---KKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 6 ~i~i~G~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-d---ek~L~klaKkLKKnnVavDII~F 72 (332)
-+.+.|..+|.++-.+.....+..... .-+.|+|=.|.+.. | -.-|..+.+++++.++.+-|++.
T Consensus 15 vv~l~G~l~~~~~~~l~~~l~~~~~~~--~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 83 (116)
T 1th8_B 15 IVRLSGELDHHTAEELREQVTDVLENR--AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAV 83 (116)
T ss_dssp EEEEEEEESHHHHHHHHHHHHHHHHSS--CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESC
T ss_pred EEEEeeeeccccHHHHHHHHHHHHhcC--CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 357889999998776655444433211 23456777777763 3 46688899999999988877655
No 229
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl CY transferase; 2.00A {Nostoc punctiforme} PDB: 2p04_A
Probab=26.44 E-value=7.5 Score=31.53 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=15.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHh
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKL 60 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkL 60 (332)
..-|+|+|||...+=++|...|-.|
T Consensus 90 ~~~ilfL~sP~v~~l~~l~~~GL~l 114 (115)
T 2p08_A 90 EEVIFFLGSPWITDTTSLAPLGIKL 114 (115)
T ss_dssp TTEEEEEEEECCCTTCCC-------
T ss_pred CCEEEEEeCCCcCCHHHHHHcCccc
Confidence 4689999999998777776665443
No 230
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=26.33 E-value=1.4e+02 Score=25.43 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+.+.+++|-.... +...|||++|-.. ..+--+ ..|++.|++.+|.|-.|.-|-..
T Consensus 131 ~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~ 208 (266)
T 3o38_A 131 VTLTSVMRATRAALRYFRGVD-HGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIAR 208 (266)
T ss_dssp HHTHHHHHHHHHHHHHHHTSS-CCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCC
T ss_pred HHhHHHHHHHHHHHHHHHhcC-CCeEEEEeCCHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCccc
Confidence 467777888888888753222 3456778877322 123333 44666777789999999999766
No 231
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=26.25 E-value=1.1e+02 Score=27.87 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=46.5
Q ss_pred CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeC-------C
Q 020031 31 NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVP-------P 103 (332)
Q Consensus 31 nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP-------~ 103 (332)
..+..++|++|=..--..+++.|.-..++.++-||. +||.+-..- ....| |.+.+ .+=+||+|. |
T Consensus 10 ~~~~~~~~~YF~~~G~eNT~~tl~la~era~e~~Ik-~iVVAS~sG-~TA~k---~~e~~---~~i~lVvVTh~~GF~~p 81 (201)
T 1vp8_A 10 HHHMEKKIVYFNKPGRENTEETLRLAVERAKELGIK-HLVVASSYG-DTAMK---ALEMA---EGLEVVVVTYHTGFVRE 81 (201)
T ss_dssp --CCCCCCEEESSCSGGGHHHHHHHHHHHHHHHTCC-EEEEECSSS-HHHHH---HHHHC---TTCEEEEEECCTTSSST
T ss_pred hhhhhheEEEecCCCcccHHHHHHHHHHHHHHcCCC-EEEEEeCCC-hHHHH---HHHHh---cCCeEEEEeCcCCCCCC
Confidence 355678899997444344555555556677777877 788876555 44444 34444 446888887 6
Q ss_pred CCchhhHHhhh
Q 020031 104 GPNALSDVLLS 114 (332)
Q Consensus 104 G~~~LsD~l~s 114 (332)
|..-+++-...
T Consensus 82 g~~e~~~e~~~ 92 (201)
T 1vp8_A 82 GENTMPPEVEE 92 (201)
T ss_dssp TCCSSCHHHHH
T ss_pred CCCcCCHHHHH
Confidence 76555555443
No 232
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=26.19 E-value=98 Score=24.89 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=36.8
Q ss_pred eEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEecCCC---CCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD---EGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FGe~~---~~n~~kL~~fi~~vN 91 (332)
-||.|.++ |....-..|.++.+++++.+|.|=.|++.... .++.+.+..|++..+
T Consensus 49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~ 109 (196)
T 2ywi_A 49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELG 109 (196)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcC
Confidence 45555533 22345677889999998887776666664321 145789999999874
No 233
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=25.65 E-value=1.6e+02 Score=24.82 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-. +..-||||+|... ..+--+ ..|++.|++.+|.|-.|.-|-..
T Consensus 121 ~N~~g~~~l~~~~~~~~~----~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~ 195 (255)
T 3icc_A 121 VNAKAPFFIIQQALSRLR----DNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVK 195 (255)
T ss_dssp HHTHHHHHHHHHHTTTEE----EEEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBC
T ss_pred hhchHHHHHHHHHHHhhC----CCCEEEEeCChhhccCCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeec
Confidence 567777888999998852 2234778887432 123333 45667777789999999988765
No 234
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=25.36 E-value=1e+02 Score=25.16 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=31.8
Q ss_pred cCCCccc-HHHHHHHHHHhhhccce-eeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 43 GSPIKHE-KKVLEMIGRKLKKNSVA-LDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 43 GSPi~~d-ek~L~klaKkLKKnnVa-vDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
|.|.... -..|.++.+++++.+|. |=.|+. +..+.+.+|++..+
T Consensus 56 cp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~-----d~~~~~~~~~~~~~ 101 (171)
T 2pwj_A 56 TGVCSSKHVPPYKHNIDKFKAKGVDSVICVAI-----NDPYTVNAWAEKIQ 101 (171)
T ss_dssp CTTHHHHTHHHHHHTHHHHHHTTCSEEEEEES-----SCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeC-----CCHHHHHHHHHHhC
Confidence 4555555 67899999999988887 555554 23578899998763
No 235
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=25.36 E-value=1e+02 Score=26.01 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc------------------ccHHHH----HHHHHHhhhccceeeEE
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK------------------HEKKVL----EMIGRKLKKNSVALDIV 70 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~------------------~dek~L----~klaKkLKKnnVavDII 70 (332)
+|+...+.+.+.++++-..+. ...-|||++|-.. ..+--+ ..+++.|++.+|.|-+|
T Consensus 122 ~N~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 200 (265)
T 1h5q_A 122 VNVFGVFNTCRAVAKLWLQKQ-QKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNAL 200 (265)
T ss_dssp HHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGTSCCEEETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred hhhHhHHHHHHHHHHHHHhcC-CCceEEEeCCchhhccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 355566777788777643221 1244667777321 122333 44566667779999999
Q ss_pred EecCCC
Q 020031 71 NFGEDD 76 (332)
Q Consensus 71 ~FGe~~ 76 (332)
..|-..
T Consensus 201 ~Pg~v~ 206 (265)
T 1h5q_A 201 SPGYVN 206 (265)
T ss_dssp EECSBC
T ss_pred ecCccc
Confidence 998765
No 236
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=25.35 E-value=86 Score=24.60 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=29.7
Q ss_pred cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 43 GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 43 GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
|.|....-..|.++.+++++.+ .||.+. . +..+.+.+|++.-+
T Consensus 48 c~~C~~~~~~l~~~~~~~~~~~---~vv~is--~-d~~~~~~~~~~~~~ 90 (159)
T 2a4v_A 48 TPGSTRQASGFRDNYQELKEYA---AVFGLS--A-DSVTSQKKFQSKQN 90 (159)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTC---EEEEEE--S-CCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCC---cEEEEe--C-CCHHHHHHHHHHhC
Confidence 3344456677889999998877 555553 2 34688999998763
No 237
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=25.22 E-value=83 Score=28.04 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=29.7
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
.+|||+-|+.-+..-+ ...|.+.|+|.++.|.||.
T Consensus 4 ~k~IllgvTGaiaa~k--~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGAQY--GLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCHHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEECHHHHHH--HHHHHHHHHHCCCEEEEEE
Confidence 4799999988887655 7889999999999999886
No 238
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=25.20 E-value=80 Score=25.11 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=25.7
Q ss_pred ceEEEEe---cCCCcccHHHHHHHHHHhhhccceeeEEEe---cCCCCCcHHHHHHHH-HHH
Q 020031 36 QRIIVFV---GSPIKHEKKVLEMIGRKLKKNSVALDIVNF---GEDDEGNTEKLEALL-AAV 90 (332)
Q Consensus 36 qRIIvFV---GSPi~~dek~L~klaKkLKKnnVavDII~F---Ge~~~~n~~kL~~fi-~~v 90 (332)
--+|.|. |.|.. .-..|.++.+++++.+|.|=.|++ |....++.+.+.+|+ +..
T Consensus 34 ~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~ 94 (171)
T 3cmi_A 34 VVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNY 94 (171)
T ss_dssp EEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------
T ss_pred EEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhcc
Confidence 3455665 44555 677889999999988777666664 222224567888998 554
No 239
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.18 E-value=1.1e+02 Score=23.98 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=32.2
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+||+++-|+=+... =-..++-+-++++|+.++|..++-..
T Consensus 4 kkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~ 43 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETL 43 (106)
T ss_dssp EEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSS
T ss_pred cEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHH
Confidence 58999999888655 55578888899999999988877655
No 240
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=25.17 E-value=1.4e+02 Score=26.68 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHhhhc--cceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCC
Q 020031 48 HEKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 48 ~dek~L~klaKkLKKn--nVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~ 103 (332)
...+.+.+|.++..|. +|.|.++.+|.- .++|++++.++.+++.-.++.+..
T Consensus 17 ~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~----~~~~~~~~aa~~sg~~PDv~~~~~ 70 (419)
T 4aq4_A 17 ELGKEVDSLAQRFNAENPDYKIVPTYKGNY----EQNLSAGIAAFRTGNAPAILQVYE 70 (419)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEECSSH----HHHHHHHHHHHHTTCCCSEEEEEG
T ss_pred hHHHHHHHHHHHHHHHCcCeEEEEEeCCCH----HHHHHHHHHHHhcCCCCeEEEECc
Confidence 3567788899888665 788887776632 488999999998877777877754
No 241
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=25.13 E-value=45 Score=29.75 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=25.9
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
..++|||+-+ .+.+..+++.|++.++.+-++.
T Consensus 250 ~~~~lvf~~~-----~~~~~~l~~~L~~~~~~~~~~~ 281 (391)
T 1xti_A 250 FNQVVIFVKS-----VQRCIALAQLLVEQNFPAIAIH 281 (391)
T ss_dssp CSEEEEECSC-----HHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEeCc-----HHHHHHHHHHHHhCCCcEEEEe
Confidence 4689999855 7888999999999988876554
No 242
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=25.10 E-value=1.1e+02 Score=29.20 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=44.0
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhc--cceeeEEEecCCCCCcHHHHHHHHHHHh-cCCCceEEEeCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKN--SVALDIVNFGEDDEGNTEKLEALLAAVN-NNDSSHLVHVPPG 104 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKn--nVavDII~FGe~~~~n~~kL~~fi~~vN-~~~~Shlv~VP~G 104 (332)
.-|+|+..|-.-.-.=+..|||+|... ++.|-||+.-... ...+..++..+. ...+-+|+.||.+
T Consensus 10 ~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~---~~~~~~~~~~~~~~~~~i~~~~lp~~ 77 (463)
T 2acv_A 10 SELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPG---MPFADSYIKSVLASQPQIQLIDLPEV 77 (463)
T ss_dssp EEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTT---CCCCHHHHHHHHCSCTTEEEEECCCC
T ss_pred CEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcc---hhhhhhhhhhcccCCCCceEEECCCC
Confidence 347777888887777799999999987 8888888754321 112334444432 2245689999876
No 243
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=25.03 E-value=1.1e+02 Score=27.04 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=9.4
Q ss_pred CCCCChHHHHHHHHhh
Q 020031 295 VDPEDPSVKDVLTSMQ 310 (332)
Q Consensus 295 VDpnd~~i~~al~~l~ 310 (332)
|+|+-+.+.++|..|-
T Consensus 325 v~~d~~~la~~i~~ll 340 (384)
T 1vgv_A 325 VGTDKQRIVEEVTRLL 340 (384)
T ss_dssp ECSSHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHH
Confidence 3444456777776664
No 244
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=24.95 E-value=2.5e+02 Score=28.09 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHH----HhcHHHHHHHHHHHHH
Q 020031 147 VDPNLDPELALAL----RVSMEEERARQEAAAK 175 (332)
Q Consensus 147 vDP~~DPELAmAL----R~SmEEEr~RQe~~~~ 175 (332)
|+|..=-+||-|| .|+.+|.++|.++..+
T Consensus 420 VnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~ 452 (496)
T 3t5t_A 420 VNPFDLVEQAEAISAALAAGPRQRAEAAARRRD 452 (496)
T ss_dssp ECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7887555666554 5555666666665544
No 245
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=24.94 E-value=3e+02 Score=23.49 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHHH----HHHHHhhhccceeeEEEecCCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVLE----MIGRKLKKNSVALDIVNFGEDDE 77 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L~----klaKkLKKnnVavDII~FGe~~~ 77 (332)
+|+...+.+.+.+++|-..+.. ..-||||+|-.. ..+--++ .+++.|.+.+|.|-+|..|-...
T Consensus 112 ~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t 190 (259)
T 4e6p_A 112 INVAGTLFTLQAAARQMIAQGR-GGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDG 190 (259)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCS
T ss_pred HHhHHHHHHHHHHHHHHHhcCC-CeEEEEECChhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCcc
Confidence 5666777888888887542221 235667776321 2344444 45566667799999999998774
Q ss_pred CcHHHHHHHHHHH
Q 020031 78 GNTEKLEALLAAV 90 (332)
Q Consensus 78 ~n~~kL~~fi~~v 90 (332)
.-...+..++...
T Consensus 191 ~~~~~~~~~~~~~ 203 (259)
T 4e6p_A 191 EHWDGVDALFARY 203 (259)
T ss_dssp TTHHHHHHHHHHH
T ss_pred chhhhhhhhhhhh
Confidence 4444444444333
No 246
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=24.91 E-value=1.8e+02 Score=22.01 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=34.1
Q ss_pred eEEEEecCCCc----ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFVGSPIK----HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFVGSPi~----~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.+|++..++-. .....|.++.+++++.+|.|=.|++.. ...+.+..|++..+
T Consensus 30 ~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~---~~~~~~~~~~~~~~ 85 (154)
T 3kcm_A 30 VVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDE---GGKVAVEEFFRKTG 85 (154)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCT---THHHHHHHHHHHHC
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCC---cchHHHHHHHHHcC
Confidence 44444434433 456678889999888776655555532 23788999999874
No 247
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=24.89 E-value=59 Score=27.67 Aligned_cols=50 Identities=6% Similarity=-0.074 Sum_probs=35.8
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--||.|. |.|....-..|.++.+++++.+|.|=.|+. +..+.+.+|++..
T Consensus 50 ~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~-----D~~~~~~~~~~~~ 103 (211)
T 2pn8_A 50 YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSV-----DSQFTHLAWINTP 103 (211)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEES-----SCHHHHHHHHTSC
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-----CCHHHHHHHHHHh
Confidence 4567777 555566677889999999987766555544 3467788998876
No 248
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=24.83 E-value=1.2e+02 Score=23.26 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=34.2
Q ss_pred ceEEEEecC---CCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGS---PIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGS---Pi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--||.|.++ |.......|.++.+++++.+|.|=.|++. .+.+.+..|+..-
T Consensus 31 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d----~~~~~~~~~~~~~ 84 (152)
T 2lrn_A 31 YVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTD----RREEDWKKAIEED 84 (152)
T ss_dssp EEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECC----SCHHHHHHHHHHH
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEcc----CCHHHHHHHHHHh
Confidence 346666643 33345677889999998877665555543 3467888898875
No 249
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=24.83 E-value=68 Score=28.00 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=26.4
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
...++|||+-+ .+....+++.|++.++.+.++.
T Consensus 237 ~~~~~lvf~~~-----~~~~~~l~~~L~~~~~~~~~~~ 269 (367)
T 1hv8_A 237 KEFYGLVFCKT-----KRDTKELASMLRDIGFKAGAIH 269 (367)
T ss_dssp TTCCEEEECSS-----HHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEECC-----HHHHHHHHHHHHhcCCCeEEee
Confidence 45678999854 6788999999999988876654
No 250
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=24.78 E-value=82 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.8
Q ss_pred eEEEEec-C--C-CcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFVG-S--P-IKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFVG-S--P-i~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
-+|.|.. + | ....-..|.++.+++++.+|.|=.|+. ++.+.+.+|++.-
T Consensus 38 ~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~-----d~~~~~~~~~~~~ 90 (163)
T 3gkn_A 38 LVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSR-----DSVKSHDNFCAKQ 90 (163)
T ss_dssp EEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEES-----SCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeC-----CCHHHHHHHHHHh
Confidence 4566653 2 2 234567788899999988877555554 3578899999875
No 251
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=24.72 E-value=1.5e+02 Score=25.81 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+++...+.+++.+++|-..+ .-| ||||+|-.. ..+--+ ..|++.|++.+|.|-+|.-|-..
T Consensus 138 ~N~~~~~~l~~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~ 213 (280)
T 3nrc_A 138 ISAYSFAALAKEGRSMMKNR--NAS-MVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIK 213 (280)
T ss_dssp HHTHHHHHHHHHHHHHHTTT--TCE-EEEEECGGGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhhcC--CCe-EEEEeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeecccc
Confidence 45666778888888885533 344 566666321 133333 45667788889999999999766
No 252
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=24.35 E-value=80 Score=27.53 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=39.3
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhcccee-e-EEEecCCCC-----C------cHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVAL-D-IVNFGEDDE-----G------NTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVav-D-II~FGe~~~-----~------n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
+||+..+...-..-|..+.+.||..++-| | ++..|.... . +...|..|...+.....-+.+.+|-|.
T Consensus 159 ~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~d 238 (247)
T 1sui_A 159 FIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGD 238 (247)
T ss_dssp EEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTT
T ss_pred EEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCC
Confidence 45555554444566777788888888754 1 222242110 1 134677888888766666666777653
No 253
>3qbr_A SJA, sjchgc06286 protein; helical bundle, BCL-2-like fold, apoptosis; HET: NHE; 2.60A {Schistosoma japonicum}
Probab=24.16 E-value=32 Score=30.63 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=24.4
Q ss_pred cCHHHHHHHHhcCCCCC-CCChHHHHHHHHhhc
Q 020031 280 ADQAFVSSILASLPGVD-PEDPSVKDVLTSMQN 311 (332)
Q Consensus 280 ~D~~fl~svL~~LPGVD-pnd~~i~~al~~l~~ 311 (332)
+|..||.-|+.+ |||| |+||..|+++..|..
T Consensus 36 ~~~~~~~~~~~~-~~~~l~~dp~~~~v~~~L~~ 67 (179)
T 3qbr_A 36 QDTDYLTDLLDN-TNIDLTCVPNGQEIIHSLLQ 67 (179)
T ss_dssp HHHHHHHHHHHH-HTCCCCCCTTHHHHHHHHHH
T ss_pred ccchHHHHHHcC-CCCCCCCCCChHHHHHHHHH
Confidence 467888888876 8888 578888888887754
No 254
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=24.11 E-value=3e+02 Score=25.44 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=42.0
Q ss_pred CccccHHHHHHHHHHHhhhcCCccccceEEE-EecC-----CCc---------ccHHHHH--------HHHHHhhhccce
Q 020031 10 GGELNLAAGIQVAQLALKHRQNKKQQQRIIV-FVGS-----PIK---------HEKKVLE--------MIGRKLKKNSVA 66 (332)
Q Consensus 10 ~G~~~~~~gIqiA~LALKHRqnK~~~qRIIv-FVGS-----Pi~---------~dek~L~--------klaKkLKKnnVa 66 (332)
+|..++..-+.+|..|.+ +-.++++ |-.| |.. .+..+|. .++.+||.+++.
T Consensus 54 ~g~~d~~~~~~~~~~ak~------~Gl~v~ld~hysd~wadP~~q~~p~~W~~~~~~~~~~~~~~yt~~v~~~l~~~g~~ 127 (334)
T 1fob_A 54 DGSYDLDYNLELAKRVKA------AGMSLYLDLHLSDTWADPSDQTTPSGWSTTDLGTLKWQLYNYTLEVCNTFAENDID 127 (334)
T ss_dssp TCTTCHHHHHHHHHHHHH------TTCEEEEEECCSSSCCBTTBCBCCTTSCSSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccCHHHHHHHHHHHHH------CCCEEEEEeccCCCCCCcccccCccccccCChHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999888844 3555554 4333 532 1222332 567889999999
Q ss_pred eeEEEecCCC
Q 020031 67 LDIVNFGEDD 76 (332)
Q Consensus 67 vDII~FGe~~ 76 (332)
||+|..|.+.
T Consensus 128 v~~v~vGNE~ 137 (334)
T 1fob_A 128 IEIISIGNEI 137 (334)
T ss_dssp CSEEEESSSG
T ss_pred CCEEEEeecC
Confidence 9999999876
No 255
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=24.10 E-value=2.1e+02 Score=27.23 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc--ccHHHHHHHHHHhhhccceeeEEE
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK--HEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~--~dek~L~klaKkLKKnnVavDII~ 71 (332)
.|+.=.|-+|+|- |+|.+-+-|++..|..+.. ..+..|.+|.+.++=..+.+ ||.
T Consensus 176 ~Ng~LmlllAylL---~~nW~A~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a~~~-vv~ 232 (294)
T 3g40_A 176 GNMDLALLIAYKL---KSNWKASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKM-QVL 232 (294)
T ss_dssp CTTHHHHHHHHHH---HHHHTCEEEEEEECSSHHHHHHHHHHHHHHHHHHTCCSCEE-EEE
T ss_pred cchhHHHHHHHHH---hhCcCCeEEEEEecCCHHHHHHHHHHHHHHHHHhcCCceEE-Eec
Confidence 4555567777766 5567778888888877664 34677888888888777654 443
No 256
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.07 E-value=95 Score=24.80 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=27.9
Q ss_pred ccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE--ecCCC
Q 020031 32 KKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN--FGEDD 76 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~--FGe~~ 76 (332)
...++||++|-++=.... =-..|+-|-.++.++.|+|+. |++..
T Consensus 3 ~~~~mkIlL~C~aGmSTs-llv~km~~~a~~~gi~v~i~a~~~~~~~ 48 (108)
T 3nbm_A 3 ASKELKVLVLCAGSGTSA-QLANAINEGANLTEVRVIANSGAYGAHY 48 (108)
T ss_dssp --CCEEEEEEESSSSHHH-HHHHHHHHHHHHHTCSEEEEEEETTSCT
T ss_pred cccCceEEEECCCCCCHH-HHHHHHHHHHHHCCCceEEEEcchHHHH
Confidence 345788998888775332 233555566677899999954 66544
No 257
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=24.01 E-value=1.8e+02 Score=24.92 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHHhhhcCCcc---ccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecC
Q 020031 13 LNLAAGIQVAQLALKHRQNKK---QQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~---~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe 74 (332)
+|+...+.+.+.+++|-..+. .+..-||||+|-.. ..+--+ ..|++.|.+.+|.|-+|.-|-
T Consensus 135 ~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~ 214 (276)
T 1mxh_A 135 SNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGL 214 (276)
T ss_dssp HHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred hccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEECchhhcCCCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCc
Confidence 456666778888888753110 01155778887322 123333 345667777799999999997
Q ss_pred CC
Q 020031 75 DD 76 (332)
Q Consensus 75 ~~ 76 (332)
..
T Consensus 215 v~ 216 (276)
T 1mxh_A 215 SL 216 (276)
T ss_dssp BS
T ss_pred cc
Confidence 65
No 258
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=23.98 E-value=2.5e+02 Score=21.58 Aligned_cols=73 Identities=16% Similarity=0.321 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcCCccccceEEEEecCC------------CcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHH
Q 020031 18 GIQVAQLALKHRQNKKQQQRIIVFVGSP------------IKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEA 85 (332)
Q Consensus 18 gIqiA~LALKHRqnK~~~qRIIvFVGSP------------i~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~ 85 (332)
|..++....++. .-+||.|+-.. +.. -++| ...+++++|..=||.++... .+.++.
T Consensus 16 g~~l~~~l~~~~-----g~~vvg~~d~~~~~~g~~i~g~pV~g-~~~l---~~~~~~~~id~viia~~~~~---~~~~~~ 83 (141)
T 3nkl_A 16 GLQLANMLRQGK-----EFHPIAFIDDDRKKHKTTMQGITIYR-PKYL---ERLIKKHCISTVLLAVPSAS---QVQKKV 83 (141)
T ss_dssp HHHHHHHHHHSS-----SEEEEEEECSCGGGTTCEETTEEEEC-GGGH---HHHHHHHTCCEEEECCTTSC---HHHHHH
T ss_pred HHHHHHHHHhCC-----CcEEEEEEECCcccCCCEecCeEEEC-HHHH---HHHHHHCCCCEEEEeCCCCC---HHHHHH
Confidence 455666544331 57899998532 211 2234 44445566654455555433 467777
Q ss_pred HHHHHhcCCCceEEEeCC
Q 020031 86 LLAAVNNNDSSHLVHVPP 103 (332)
Q Consensus 86 fi~~vN~~~~Shlv~VP~ 103 (332)
+++.+. .-+.++.+||.
T Consensus 84 i~~~l~-~~gv~v~~vP~ 100 (141)
T 3nkl_A 84 IIESLA-KLHVEVLTIPN 100 (141)
T ss_dssp HHHHHH-TTTCEEEECCC
T ss_pred HHHHHH-HcCCeEEECCC
Confidence 887775 34678888875
No 259
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=23.97 E-value=1.9e+02 Score=25.11 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc-------------cHHHH----HHHHHHhhhccceeeEEEecC-
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH-------------EKKVL----EMIGRKLKKNSVALDIVNFGE- 74 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~-------------dek~L----~klaKkLKKnnVavDII~FGe- 74 (332)
+|+...+.+.+.+++|-..+ +..-||||+|.... .+--+ ..|++.|.+.+|.|-.|+-|-
T Consensus 120 vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~ 197 (274)
T 3e03_A 120 VNARGSFVCAQACLPHLLQA--PNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTV 197 (274)
T ss_dssp HTHHHHHHHHHHHHHHHTTS--SSCEEEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBC
T ss_pred HhhHhHHHHHHHHHHHHHhc--CCceEEEECChHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcc
Confidence 67788888999999885422 23456778875432 12222 456778888899999999993
Q ss_pred CC
Q 020031 75 DD 76 (332)
Q Consensus 75 ~~ 76 (332)
..
T Consensus 198 v~ 199 (274)
T 3e03_A 198 IA 199 (274)
T ss_dssp BC
T ss_pred cc
Confidence 44
No 260
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=23.95 E-value=90 Score=27.73 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=30.1
Q ss_pred cceEEEEecC--C--CcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 35 QQRIIVFVGS--P--IKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 35 ~qRIIvFVGS--P--i~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+|||+++..+ | ..--+..+..|++.|.+.+..|.||+..
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~ 44 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPS 44 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4787776644 3 2345778999999999999999999844
No 261
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=23.82 E-value=82 Score=28.06 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=28.0
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
++||++-|+.-+..-+ ...|.++|+|.+ .|.||.
T Consensus 19 ~k~IllgvTGsiaa~k--~~~ll~~L~~~g-~V~vv~ 52 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIK--FGNLCHCFTEWA-EVRAVV 52 (209)
T ss_dssp CCEEEEEECSSGGGGG--HHHHHHHHHTTS-EEEEEE
T ss_pred CCEEEEEEeCcHHHHH--HHHHHHHHhcCC-CEEEEE
Confidence 5799999988886544 788889999998 888875
No 262
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=23.66 E-value=2.4e+02 Score=28.29 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=47.6
Q ss_pred CcccccCccccHHHH----HHHHHHHhhhcCCccccceEEEEecCCCcc---c---------------------------
Q 020031 4 DAGLEIGGELNLAAG----IQVAQLALKHRQNKKQQQRIIVFVGSPIKH---E--------------------------- 49 (332)
Q Consensus 4 lH~i~i~G~~~~~~g----IqiA~LALKHRqnK~~~qRIIvFVGSPi~~---d--------------------------- 49 (332)
+.+..|.|+.+...| |..|..--+.---++ ..|||||+.---.+ |
T Consensus 216 V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~ 294 (454)
T 3vi3_B 216 VGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYY 294 (454)
T ss_dssp HTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEETTEECCTTTS
T ss_pred HhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCCcCcCCCccccceecCCCCccEeCCCcccccccC
Confidence 445678888776444 433333323333344 88999998642211 1
Q ss_pred -HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 50 -KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 50 -ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
=-.+-.|+++|.+|||.+=+-+- . ......+.|.+.+
T Consensus 295 DYPSv~ql~~~l~e~nI~~IFAVt---~-~~~~~Y~~L~~~i 332 (454)
T 3vi3_B 295 DYPSIAHLVQKLSENNIQTIFAVT---E-EFQPVYKELKNLI 332 (454)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEE---G-GGHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhcCCcEEEEEc---C-ccchHHHHHHHhC
Confidence 11378899999999996533332 2 3345556666555
No 263
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=23.57 E-value=56 Score=29.50 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=27.4
Q ss_pred CCccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 30 QNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 30 qnK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
.++...|||++++ .|-.-.---+..|++.|++.+..|.|++.+
T Consensus 10 ~~~~~~MrIl~~~-~~~~gh~~~~~~La~~L~~~GheV~v~~~~ 52 (398)
T 4fzr_A 10 VPRGSHMRILVIA-GCSEGFVMPLVPLSWALRAAGHEVLVAASE 52 (398)
T ss_dssp -----CCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEEEG
T ss_pred CCCCCceEEEEEc-CCCcchHHHHHHHHHHHHHCCCEEEEEcCH
Confidence 3455678976554 343333344678999999999999988764
No 264
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=29.24 E-value=17 Score=29.67 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=31.7
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHH
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALL 87 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi 87 (332)
...++|||+.+. +....|++.|++.++.+..+.=+-...+-...++.|-
T Consensus 29 ~~~~~iVF~~~~-----~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~ 77 (170)
T 2yjt_D 29 EATRSIVFVRKR-----ERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT 77 (170)
Confidence 346899998764 6677889999998887766543222212334555553
No 265
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=23.46 E-value=1.6e+02 Score=25.50 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHHH----HHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVLE----MIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L~----klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+++.+++|-..+ +..-||||+|-.. ..+--+. .|++.|.+.+|.|-.|..|-..
T Consensus 117 vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~ 193 (271)
T 3tzq_B 117 VNARGTMLMCKYAIPRLISA--GGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TCEEEEEECCGGGTSBCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC
T ss_pred HHhHHHHHHHHHHHHHHHhc--CCCEEEEECCHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCc
Confidence 56777888899998874211 2345677777432 1333343 5666777789999999999765
No 266
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=23.36 E-value=1.7e+02 Score=26.80 Aligned_cols=54 Identities=9% Similarity=0.217 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhccceeeEEEecCCCCCc---HHHHHHHHHHHhcCCCceEEEeCCCCchhhHH
Q 020031 52 VLEMIGRKLKKNSVALDIVNFGEDDEGN---TEKLEALLAAVNNNDSSHLVHVPPGPNALSDV 111 (332)
Q Consensus 52 ~L~klaKkLKKnnVavDII~FGe~~~~n---~~kL~~fi~~vN~~~~Shlv~VP~G~~~LsD~ 111 (332)
.-+..|+.+++.+|.|.+|-||..+.-+ .+.|+..-++ +++.+|. +.+ .-|++.
T Consensus 26 ~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~---tGG~yf~-a~~--~~l~~~ 82 (242)
T 3rag_A 26 DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADA---GGGMCRI-VQP--ADISAT 82 (242)
T ss_dssp CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHH---TTSCEEE-ECG--GGHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHh---cCCeEEE-eeH--HHHHHH
Confidence 3567788899999999999997643112 2456654443 2444554 333 347766
No 267
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=23.35 E-value=88 Score=27.27 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=28.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
+||++-|+.-+..- ....|.++|+|.++.|.+|.
T Consensus 2 k~IllgvTGs~aa~--k~~~l~~~L~~~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVI--YGIKLLQVLEELDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHH--HHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEECHHHHH--HHHHHHHHHHHCCCEEEEEE
Confidence 58999998877643 37889999999999999886
No 268
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=23.14 E-value=1.3e+02 Score=24.78 Aligned_cols=64 Identities=23% Similarity=0.148 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHHhhhcCCcc----ccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEec
Q 020031 13 LNLAAGIQVAQLALKHRQNKK----QQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~----~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FG 73 (332)
+++...+.+.+.++++-.... .+..-|||++|-.. ..+--+ ..+++.|++.+|.|-+|.-|
T Consensus 100 ~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg 179 (242)
T 1uay_A 100 VNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPG 179 (242)
T ss_dssp HHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEec
Confidence 456667778888887754221 11235677777421 123233 44566777779999999999
Q ss_pred CCC
Q 020031 74 EDD 76 (332)
Q Consensus 74 e~~ 76 (332)
-..
T Consensus 180 ~v~ 182 (242)
T 1uay_A 180 LFD 182 (242)
T ss_dssp SCS
T ss_pred cCc
Confidence 766
No 269
>1g91_A MPIF-1, myeloid progenitor inhibitory factor-1; chemokine, cytokine, CKB8, CCL23; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 2hcc_A
Probab=23.07 E-value=46 Score=25.22 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.6
Q ss_pred CCCCChHHHHHHHHhhccCCc
Q 020031 295 VDPEDPSVKDVLTSMQNQSEP 315 (332)
Q Consensus 295 VDpnd~~i~~al~~l~~~~~~ 315 (332)
+||+++-||++|..|.++...
T Consensus 52 adP~~~WVq~~ik~l~~~~~~ 72 (77)
T 1g91_A 52 ANPSDKQVQVCMRMLKLDTRI 72 (77)
T ss_dssp ECTTCHHHHHHHHHHSSCTTT
T ss_pred CCCChHHHHHHHHHHHhhhhh
Confidence 499999999999999876543
No 270
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.00 E-value=2e+02 Score=23.84 Aligned_cols=43 Identities=7% Similarity=-0.079 Sum_probs=26.2
Q ss_pred ccceEEEEecCCCc-ccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 34 QQQRIIVFVGSPIK-HEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 34 ~~qRIIvFVGSPi~-~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.++||.++.|.+-. .....+.-.-+-|++.++.+.++..+...
T Consensus 119 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~ 162 (272)
T 3o74_A 119 APRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFS 162 (272)
T ss_dssp CCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSS
T ss_pred CCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCC
Confidence 34566665555432 23455566667788888887777666433
No 271
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=22.99 E-value=84 Score=28.07 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=20.9
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEe
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNF 72 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~F 72 (332)
+||++| +.|-.-.-.-+..|++.|++.+..|.|++.
T Consensus 1 MrIl~~-~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~ 36 (384)
T 2p6p_A 1 MRILFV-AAGSPATVFALAPLATAARNAGHQVVMAAN 36 (384)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEE-eCCccchHhHHHHHHHHHHHCCCEEEEEeC
Confidence 355443 445444445566777777777766666543
No 272
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=22.97 E-value=95 Score=24.80 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=34.6
Q ss_pred eEEEEe-cC--CC-c-ccHHHHHHHHHHhhhccce-eeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFV-GS--PI-K-HEKKVLEMIGRKLKKNSVA-LDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFV-GS--Pi-~-~dek~L~klaKkLKKnnVa-vDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
-||.|. ++ |. . ..-..|.++.+++++.+|. |=.|+. +..+.+.+|++..+
T Consensus 38 vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~-----d~~~~~~~~~~~~~ 93 (162)
T 1tp9_A 38 VILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISV-----NDPFVMKAWAKSYP 93 (162)
T ss_dssp EEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEES-----SCHHHHHHHHHTCT
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-----CCHHHHHHHHHhcC
Confidence 466666 33 33 4 4567789999999988877 555554 34678999998764
No 273
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=22.92 E-value=79 Score=28.48 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=26.1
Q ss_pred ccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 34 QQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 34 ~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
...++|||+.+ .+....+++.|++.++.+.++.
T Consensus 275 ~~~~~lVf~~~-----~~~~~~l~~~L~~~~~~~~~~h 307 (417)
T 2i4i_A 275 KDSLTLVFVET-----KKGADSLEDFLYHEGYACTSIH 307 (417)
T ss_dssp TTCEEEEECSS-----HHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCeEEEEECC-----HHHHHHHHHHHHHCCCCeeEec
Confidence 35689999854 6788899999999998876654
No 274
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.89 E-value=33 Score=42.04 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=31.1
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
.=|+||-||=.+.-.+|.++|+++. ..+..|+.|...
T Consensus 2645 tPlifilSpG~DP~~~l~~lA~~~~---~~~~~iSLGqgQ 2681 (3245)
T 3vkg_A 2645 SPLLLCSVPGYDASSKVDDLALQLH---KQYKSFAIGSPE 2681 (3245)
T ss_dssp SCEECEECTTCCCHHHHHHHHHHHT---CCCCCCBTTSHH
T ss_pred ccEEEEeCCCCChHHHHHHHHHHhC---CCcEEEECCCCc
Confidence 3588999999888999999999985 368889999754
No 275
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=22.76 E-value=2.2e+02 Score=24.68 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCcc----------cHH----HHHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKH----------EKK----VLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~~----------dek----~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|- +. ..-||||+|-... .+- -...|++.|.+.+|.|-+|.-|-..
T Consensus 110 ~N~~g~~~l~~~~~~~~--~~--~g~iv~isS~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 183 (263)
T 2a4k_A 110 VNLTGSFLVARKAGEVL--EE--GGSLVLTGSVAGLGAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQ 183 (263)
T ss_dssp HHHHHHHHHHHHHHHHC--CT--TCEEEEECCCTTCCHHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBC
T ss_pred HHhHHHHHHHHHHHHHH--hc--CCEEEEEecchhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCc
Confidence 56677788889999886 22 3456778875432 111 2355677778889999999999765
No 276
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=22.66 E-value=18 Score=34.44 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=11.5
Q ss_pred ccHHHHHHHHHHhhh
Q 020031 48 HEKKVLEMIGRKLKK 62 (332)
Q Consensus 48 ~dek~L~klaKkLKK 62 (332)
.++++|..+.+.|-+
T Consensus 229 vt~~~l~~i~~~il~ 243 (358)
T 2pk2_A 229 VTLELLDELTHEFLQ 243 (358)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 378888888888754
No 277
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=22.45 E-value=1.8e+02 Score=24.99 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHH----HHHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKV----LEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~----L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-..+ +..-||||+|-.. ..+-- ...|++.|++.+|.|-+|..|-..
T Consensus 137 vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~ 213 (262)
T 3rkr_A 137 VNLKAPYLLLRAFAPAMIAA--KRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVR 213 (262)
T ss_dssp HHTHHHHHHHHHHHHHHHHT--TCCEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-
T ss_pred HHhHHHHHHHHHHHHHHHhC--CCceEEEEechhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCc
Confidence 45666677778877764211 1234677777432 12222 345667777889999999998766
No 278
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.44 E-value=3.1e+02 Score=23.13 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=40.1
Q ss_pred cceEEEEecCCCcc--cHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 35 QQRIIVFVGSPIKH--EKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 35 ~qRIIvFVGSPi~~--dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
+.+.|.||-.-+.. -..-+.-+-+.+++.++.+.++..+. +.++...+++.+....-.=+|.+|..
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE----DIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT----CHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC----CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34455555444432 24556677788899999888776543 34555666666655554556666654
No 279
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=22.43 E-value=65 Score=30.33 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=36.3
Q ss_pred cCCccccceEEEEecCCCcc----cHHHHHHHHHHhhhccceeeEEEecC
Q 020031 29 RQNKKQQQRIIVFVGSPIKH----EKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 29 RqnK~~~qRIIvFVGSPi~~----dek~L~klaKkLKKnnVavDII~FGe 74 (332)
|..+.+++||.+|+.+-... -...+..|++.|.+.+..|+||....
T Consensus 40 ~~~~~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 40 RTSSIKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp EECCCCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred ccCCCCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 56667889999888664432 23468899999999999999999864
No 280
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}
Probab=22.39 E-value=2.7e+02 Score=23.51 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-.. +.-|||++|-.. ..+--+ ..|++.|++.+|.|-.|.-|-..
T Consensus 100 vN~~g~~~~~~~~~~~~~~----~g~iv~~sS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~ 174 (244)
T 4e4y_A 100 LNVWSSIYFIKGLENNLKV----GASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVD 174 (244)
T ss_dssp HHTHHHHHHHHHTGGGEEE----EEEEEEECCGGGTCCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBC
T ss_pred HccHHHHHHHHHHHHHhcc----CcEEEEECCHHHccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccC
Confidence 5677778888888887532 145777777432 133333 34667777889999999999876
No 281
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=22.33 E-value=1.2e+02 Score=25.95 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-..+ . .-||||+|-.. ..+--+ ..|++.|.+.+|.|-+|.-|-..
T Consensus 114 ~N~~g~~~~~~~~~~~~~~~--~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 189 (247)
T 2jah_A 114 TNLLGLMYMTRAALPHLLRS--K-GTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTD 189 (247)
T ss_dssp HHTHHHHHHHHHHHHHHHHH--T-CEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBS
T ss_pred HHhHHHHHHHHHHHHHHHHC--C-CEEEEEccHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCC
Confidence 46667778888888774322 2 45667777321 123222 45667777889999999988765
No 282
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=22.21 E-value=1e+02 Score=23.70 Aligned_cols=40 Identities=3% Similarity=0.039 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 48 HEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 48 ~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
.....|.++.++++..+|.|=.|++. .+.+.+..|+...+
T Consensus 51 ~~~~~l~~l~~~~~~~~v~~v~v~~d----~~~~~~~~~~~~~~ 90 (165)
T 3or5_A 51 SEIPDMVQVQKTWASRGFTFVGIAVN----EQLPNVKNYMKTQG 90 (165)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEECS----CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECC----CCHHHHHHHHHHcC
Confidence 46778899999998877655555542 45688999998764
No 283
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=22.20 E-value=1.1e+02 Score=26.14 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=29.1
Q ss_pred cceEEEEecCCCcccHH-HHHHHHHHhhhccceeeEEEecCC
Q 020031 35 QQRIIVFVGSPIKHEKK-VLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek-~L~klaKkLKKnnVavDII~FGe~ 75 (332)
++++|+|+|.+ ..-+- -+.+|.+.|++.+..|-+|..+-.
T Consensus 3 ~~~~i~i~G~s-GsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVGYK-HSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEECCT-TSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 57899999955 44443 347899999998888888886543
No 284
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=22.03 E-value=81 Score=26.91 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.7
Q ss_pred ccccceEEEEecCCCc--cc-HHHHHHHHHHhhhccce
Q 020031 32 KKQQQRIIVFVGSPIK--HE-KKVLEMIGRKLKKNSVA 66 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~--~d-ek~L~klaKkLKKnnVa 66 (332)
.++++|=+++.|.|+- .. .+.+.++.+.|++++..
T Consensus 5 ~~~~~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~ 42 (161)
T 2f62_A 5 HHHHMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVM 42 (161)
T ss_dssp CCCCCCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCE
T ss_pred chhhhhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 4678999999999996 35 56778899999999863
No 285
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=22.02 E-value=48 Score=29.71 Aligned_cols=32 Identities=13% Similarity=0.323 Sum_probs=26.0
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEE
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~ 71 (332)
..|+|||+. +.+....|++.|++.++.+-++.
T Consensus 266 ~~~~lvf~~-----~~~~~~~l~~~L~~~~~~~~~~~ 297 (412)
T 3fht_A 266 IAQAMIFCH-----TRKTASWLAAELSKEGHQVALLS 297 (412)
T ss_dssp SSEEEEECS-----SHHHHHHHHHHHHHTTCCCEEEC
T ss_pred CCCEEEEeC-----CHHHHHHHHHHHHhCCCeEEEec
Confidence 458999986 47788999999999988876654
No 286
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.96 E-value=1.2e+02 Score=26.16 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc----------------------ccHHHH----HHHHHHhhhccce
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK----------------------HEKKVL----EMIGRKLKKNSVA 66 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~----------------------~dek~L----~klaKkLKKnnVa 66 (332)
+|+...+.+.+.+++|-. +..-||||+|-.. ..+--+ ..|++.|.+.+|.
T Consensus 127 ~N~~g~~~l~~~~~~~~~----~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 202 (287)
T 3pxx_A 127 VDFVGVINTVHAALPYLT----SGASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIR 202 (287)
T ss_dssp HHTHHHHHHHHHHGGGCC----TTCEEEEECCHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred hhhhhhHHHHHHHHHHhh----cCcEEEEeccchhcccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 566777888999998862 2234778888321 122223 3466667777999
Q ss_pred eeEEEecCCC
Q 020031 67 LDIVNFGEDD 76 (332)
Q Consensus 67 vDII~FGe~~ 76 (332)
|-.|+.|-..
T Consensus 203 vn~v~PG~v~ 212 (287)
T 3pxx_A 203 ANVIHPTNVN 212 (287)
T ss_dssp EEEEEESSBS
T ss_pred EEEEecCccc
Confidence 9999999765
No 287
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=21.88 E-value=1e+02 Score=30.32 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=0.0
Q ss_pred ccccceEEEEe---cCCCccc---HHHHHHHHHHhhhccceeeEEE
Q 020031 32 KKQQQRIIVFV---GSPIKHE---KKVLEMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 32 K~~~qRIIvFV---GSPi~~d---ek~L~klaKkLKKnnVavDII~ 71 (332)
|.++|| |+|| +.|+.-. -+-.-.|.|-|.|.++.|.||.
T Consensus 6 ~~~~Mk-Il~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~ 50 (536)
T 3vue_A 6 HHHHMN-VVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVIS 50 (536)
T ss_dssp --CCCE-EEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCcE-EEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEe
No 288
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=21.87 E-value=3.6e+02 Score=23.37 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=39.3
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
+|.++.||. -|-.-+.+.++.|++-+|..|+-..|=+- ..++|..|++..
T Consensus 1 ~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~dv~V~saHR--~p~~~~~~~~~a 50 (157)
T 2ywx_A 1 MICIIMGSE--SDLKIAEKAVNILKEFGVEFEVRVASAHR--TPELVEEIVKNS 50 (157)
T ss_dssp CEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTTT--CHHHHHHHHHHC
T ss_pred CEEEEEccH--HHHHHHHHHHHHHHHcCCCeEEEEEcccC--CHHHHHHHHHhc
Confidence 367777875 56677888888899999999988888544 788899888855
No 289
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=21.82 E-value=1.1e+02 Score=27.13 Aligned_cols=49 Identities=6% Similarity=-0.064 Sum_probs=35.3
Q ss_pred eEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 37 RIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 37 RIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
-||+|. |.|....-..|.++.+++++.+|.|=.|+. +..+.+.+|++..
T Consensus 94 vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~-----D~~~~~~~~~~~~ 146 (254)
T 3tjj_A 94 LVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSV-----DSQFTHLAWINTP 146 (254)
T ss_dssp EEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEES-----SCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcC-----CCHHHHHHHHHHH
Confidence 466676 445556778899999999988876544443 3467888998876
No 290
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=21.47 E-value=2.7e+02 Score=23.70 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHhhhcCCc------cccceEEEEecCCCcc-----------cHHHH----HHHHHHhhhccceeeEEE
Q 020031 13 LNLAAGIQVAQLALKHRQNK------KQQQRIIVFVGSPIKH-----------EKKVL----EMIGRKLKKNSVALDIVN 71 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK------~~~qRIIvFVGSPi~~-----------dek~L----~klaKkLKKnnVavDII~ 71 (332)
+|+...+.+.+.+++|-... .++..-||||+|-... .+--+ ..|++.|.+.+|.|-.|.
T Consensus 113 vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~ 192 (257)
T 3tl3_A 113 INLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIA 192 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEE
Confidence 56777788888888875431 1234567888885431 23323 456777888899999999
Q ss_pred ecCCC
Q 020031 72 FGEDD 76 (332)
Q Consensus 72 FGe~~ 76 (332)
-|-..
T Consensus 193 PG~v~ 197 (257)
T 3tl3_A 193 PGLFD 197 (257)
T ss_dssp ECSBC
T ss_pred ecCcc
Confidence 99766
No 291
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=21.45 E-value=2.9e+02 Score=25.80 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=43.1
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
+|+++..+........-+.++.+.|++.++.+.++.=++.+ .+.+.++..++.+......-+|-|=-|
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~d~IIavGGG 108 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN-PSFDNVMKAVERYRNDSFDFVVGLGGG 108 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS-CBHHHHHHHHHHHTTSCCSEEEEEESH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC-CCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 56666665534332234677778888888865444334555 678888888888876655566666444
No 292
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=21.42 E-value=1.8e+02 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.102 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGS 44 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGS 44 (332)
+++...+.+.+.++++-.. ..-||||+|
T Consensus 112 ~N~~g~~~l~~~~~~~~~~----~g~iv~~sS 139 (276)
T 1wma_A 112 TNFFGTRDVCTELLPLIKP----QGRVVNVSS 139 (276)
T ss_dssp HHTHHHHHHHHHHGGGEEE----EEEEEEECC
T ss_pred eeeeeHHHHHHHHHHhhCC----CCEEEEECC
Confidence 4556667788888887431 245778887
No 293
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=21.35 E-value=1.2e+02 Score=27.24 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=30.2
Q ss_pred cccceEEEEec--CCC--------cccHHHHHHHHHHhhhccceeeEEEecCC
Q 020031 33 KQQQRIIVFVG--SPI--------KHEKKVLEMIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 33 ~~~qRIIvFVG--SPi--------~~dek~L~klaKkLKKnnVavDII~FGe~ 75 (332)
...+||+++.. .|+ .--+.-+..|++.|.+.+..|.||.+...
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~ 70 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATR 70 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 34467665553 353 22467789999999999999999998653
No 294
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.31 E-value=1.5e+02 Score=23.83 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=27.7
Q ss_pred CccccceEEEEecCCCcccHHHHHHHHHHhhhccceeeEE
Q 020031 31 NKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIV 70 (332)
Q Consensus 31 nK~~~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII 70 (332)
-+..+.++|+|+|-|=.--.--...|+++|+..+..|-++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3445678999999886544445677889998777555444
No 295
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=21.21 E-value=1e+02 Score=24.77 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=29.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe 74 (332)
++|+|+-+|.--.+++-...|++.| ++ ++|+..-+
T Consensus 2 ~k~~I~Y~S~tGnT~~~A~~ia~~l---g~-~~~~~~~~ 36 (164)
T 2bmv_A 2 GKIGIFFGTDSGNAEAIAEKISKAI---GN-AEVVDVAK 36 (164)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHH---CS-EEEEEGGG
T ss_pred CeEEEEEECCCchHHHHHHHHHHHc---CC-cEEEeccc
Confidence 4788999999999999999999999 45 77877754
No 296
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=21.06 E-value=81 Score=25.93 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=34.5
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--||.|. |.|....-..|.++.+++++.+|.|=.|++ +..+.+.+|++..
T Consensus 36 ~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----d~~~~~~~~~~~~ 89 (197)
T 1qmv_A 36 YVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSV-----DSQFTHLAWINTP 89 (197)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEES-----SCHHHHHHHHTSC
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-----CCHHHHHHHHHHH
Confidence 3567777 555556677899999999987766555554 2246677787765
No 297
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=21.06 E-value=1.2e+02 Score=25.84 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHHHHH----HHHhhhc--cceeeEEEecCCC
Q 020031 14 NLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVLEMI----GRKLKKN--SVALDIVNFGEDD 76 (332)
Q Consensus 14 ~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L~kl----aKkLKKn--nVavDII~FGe~~ 76 (332)
|+...+.+.+.++++-... . .-||||+|-.. ..+--+..+ ++.|.+. +|.|-+|..|-..
T Consensus 111 N~~~~~~~~~~~~~~~~~~--~-g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~ 187 (253)
T 1hxh_A 111 NTESVFIGCQQGIAAMKET--G-GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIY 187 (253)
T ss_dssp HTHHHHHHHHHHHHHHTTT--C-EEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEEC
T ss_pred hcHHHHHHHHHHHHHHHHc--C-CEEEEEcchhhcCCCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCcc
Confidence 4445566777777765322 2 45667777321 234444444 4445555 9999999999766
No 298
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=21.02 E-value=76 Score=27.07 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=40.7
Q ss_pred EEEecCCCcccHHHHHHHHHHhhhcccee-eEEEe-cCC-----CCCcHHHHHHHHHHHhcCCCceEEEeCCCC
Q 020031 39 IVFVGSPIKHEKKVLEMIGRKLKKNSVAL-DIVNF-GED-----DEGNTEKLEALLAAVNNNDSSHLVHVPPGP 105 (332)
Q Consensus 39 IvFVGSPi~~dek~L~klaKkLKKnnVav-DII~F-Ge~-----~~~n~~kL~~fi~~vN~~~~Shlv~VP~G~ 105 (332)
+||+..+...-..-+..+.+.||..++-| |-+.| |.. .+.....+..|.+.+.....-+.+.+|-|.
T Consensus 151 ~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d 224 (232)
T 3cbg_A 151 LIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGD 224 (232)
T ss_dssp EEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBT
T ss_pred EEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCC
Confidence 45555554344556777788888887643 21222 221 123467889999999776666666677543
No 299
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=21.01 E-value=2.5e+02 Score=24.15 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHHhhhcCCc-cccceEEEEecCCC-------c-----ccHHHHH----HHHHHhhhccceeeEEEecCC
Q 020031 13 LNLAAGIQVAQLALKHRQNK-KQQQRIIVFVGSPI-------K-----HEKKVLE----MIGRKLKKNSVALDIVNFGED 75 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK-~~~qRIIvFVGSPi-------~-----~dek~L~----klaKkLKKnnVavDII~FGe~ 75 (332)
+|+...+.+.+.++++-... ..+..-||||+|-. . ..+--+. .|++.|++.+|.|-+|..|-.
T Consensus 135 ~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v 214 (272)
T 4e3z_A 135 VNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGII 214 (272)
T ss_dssp HHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCC
Confidence 45666777888887764321 11234566777621 1 1233333 467777888999999999977
Q ss_pred C
Q 020031 76 D 76 (332)
Q Consensus 76 ~ 76 (332)
.
T Consensus 215 ~ 215 (272)
T 4e3z_A 215 E 215 (272)
T ss_dssp C
T ss_pred c
Confidence 6
No 300
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=21.00 E-value=2.5e+02 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=41.1
Q ss_pred cceEEEEecCCCcc--c-------HHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhc
Q 020031 35 QQRIIVFVGSPIKH--E-------KKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN 92 (332)
Q Consensus 35 ~qRIIvFVGSPi~~--d-------ek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~ 92 (332)
-..|++|.|.+-.. . .+.|..+++..++.+|.|=|=+....-..+.+.+..|++.|++
T Consensus 98 ~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~ 164 (286)
T 3dx5_A 98 TNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLETHPNTLTDTLPSTLELLGEVDH 164 (286)
T ss_dssp CCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSTTSSHHHHHHHHHHHCC
T ss_pred CCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCCcCcCCHHHHHHHHHhcCC
Confidence 45677888875421 1 3567788889999999887777633222567889999999973
No 301
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=21.00 E-value=2.7e+02 Score=20.89 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=37.4
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHhcCCCceEEEeCCC
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPG 104 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN~~~~Shlv~VP~G 104 (332)
++++..|.| .+.+.+.+++. .+|+|.+|-. .....+|-...+.|=..-.|-++.||++
T Consensus 82 ~~~~~~g~~----~~~I~~~a~~~-----~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 82 EKLSGSGDL----GQVLSDAIEQY-----DVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp CEEEEEECH----HHHHHHHHHHT-----TCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred EEEEecCCH----HHHHHHHHHhc-----CCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEeeCC
Confidence 345556665 45677776653 2789999977 4555555445555545667888888875
No 302
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=20.99 E-value=1.1e+02 Score=26.06 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc------------ccHHHHH----HHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK------------HEKKVLE----MIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~------------~dek~L~----klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-.. . +..-||||+|-.. ..+--+. .+++.|++.+|.|-+|..|-..
T Consensus 124 ~n~~~~~~l~~~~~~~~~~-~-~~~~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~ 201 (278)
T 2bgk_A 124 INVYGAFLVAKHAARVMIP-A-KKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVA 201 (278)
T ss_dssp HHTHHHHHHHHHHHHHHGG-G-TCEEEEEECCGGGTCCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCS
T ss_pred HhhHHHHHHHHHHHHHHhh-c-CCCeEEEEeeccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceec
Confidence 4566677788888877432 1 2334567766321 1233333 4555566679999999888654
No 303
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=20.96 E-value=1.4e+02 Score=25.32 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=34.2
Q ss_pred ceEEEEe----cCCCcccHHHHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFV----GSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFV----GSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--||.|. |.|....-..|.++.+++++.+|.|=.|++ +..+.+.+|++..
T Consensus 58 ~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~-----D~~~~~~~~~~~~ 111 (220)
T 1zye_A 58 YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSV-----DSHFSHLAWINTP 111 (220)
T ss_dssp EEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEES-----SCHHHHHHHHTSC
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-----CCHHHHHHHHHHH
Confidence 3566677 344556778899999999987766555544 2346788888765
No 304
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.92 E-value=1.6e+02 Score=25.51 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-..+. +..-||||+|-.. ..+--+ ..|++.|.+.+|.|-.|+.|-..
T Consensus 135 ~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~ 212 (280)
T 3pgx_A 135 VNLTGTWRTLRATVPAMIEAG-NGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVE 212 (280)
T ss_dssp HHTHHHHHHHHHHHHHHHHHC-SCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC
T ss_pred hhhHHHHHHHHHHHHHHHhcC-CCCEEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccc
Confidence 567777888888888743221 1344677877321 233333 34667777789999999999866
No 305
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=20.90 E-value=1.6e+02 Score=25.54 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-..+. +...||||+|-.. ..+--+ ..|++.|.+.+|.|-.|+-|-..
T Consensus 135 ~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~ 212 (286)
T 3uve_A 135 INLAGVWKTVKAGVPHMIAGG-RGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVK 212 (286)
T ss_dssp HHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS
T ss_pred HhhHHHHHHHHHHHHHHHhCC-CCcEEEEECchhhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccc
Confidence 567777888899988853221 2345778877321 133333 35667777789999999999765
No 306
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=20.88 E-value=1.3e+02 Score=26.29 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCC-----Cc------ccHHHHH----HHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSP-----IK------HEKKVLE----MIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSP-----i~------~dek~L~----klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+++.+++|-..+ ..| ||||+|- .. ..+--+. .+++.|.+.+|.|-+|..|-..
T Consensus 133 ~N~~g~~~l~~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 208 (285)
T 2p91_A 133 ISVYSLIALTRELLPLMEGR--NGA-IVTLSYYGAEKVVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVK 208 (285)
T ss_dssp HHTHHHHHHHHHHGGGGTTS--CCE-EEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCC
T ss_pred HhhHHHHHHHHHHHHHHHHc--CCE-EEEEccchhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCccc
Confidence 45667778889999886422 334 5677772 11 1344443 3566677779999999999765
No 307
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=20.76 E-value=2.2e+02 Score=24.72 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCC-c-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPI-K-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi-~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-... +..-||||+|-. . ..+--+ ..|++.|.+.+|.|-+|.-|-..
T Consensus 129 ~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 206 (267)
T 1vl8_A 129 VNLFGTYYVCREAFSLLRES--DNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYR 206 (267)
T ss_dssp HHTHHHHHHHHHHHHHHTTC--SSCEEEEECCGGGTCCCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBC
T ss_pred HhhHHHHHHHHHHHHHHHHc--CCcEEEEECCcchhccCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCc
Confidence 46666777888888774322 223456776643 1 123333 44666777789999999999766
No 308
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=20.71 E-value=83 Score=25.73 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=27.8
Q ss_pred eEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEec
Q 020031 37 RIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFG 73 (332)
Q Consensus 37 RIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FG 73 (332)
+|+||.+|+--.+++-...|++.|... .++|+...
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~--~~~~~~~~ 35 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK--ADAPIDVD 35 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG--BCCCEEGG
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC--CcEEEehh
Confidence 588999999888999999999999865 44555553
No 309
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=20.70 E-value=1.6e+02 Score=25.06 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-.. ....| |||++|... ..+--+ ..+++.+++.+|.|-+|..|-..
T Consensus 122 ~n~~g~~~l~~~~~~~~~~-~~~~~-iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~ 198 (266)
T 1xq1_A 122 TNLESAYHLSQLAHPLLKA-SGCGN-IIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIA 198 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HSSCE-EEEEC----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC
T ss_pred HhhHHHHHHHHHHHHHHHh-cCCcE-EEEEccchhccCCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCc
Confidence 4556666777888765321 11234 567777432 123333 34566667779999999999766
No 310
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=20.59 E-value=1.2e+02 Score=26.65 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|..-+.+...-||||+|-.. ..+--+ ..|++.|.+.+|.|-.|+-|-..
T Consensus 131 vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~ 209 (279)
T 3sju_A 131 TNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVE 209 (279)
T ss_dssp HHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBC
T ss_pred HHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCccc
Confidence 56777788889988852222223345667777321 123333 45666777789999999999776
No 311
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=20.55 E-value=1.4e+02 Score=24.65 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=35.1
Q ss_pred ceEEEEecCCC----cccHHHHHHHHHHhhhc---cceeeEEEecCCCCCcHHHHHHHHHHH
Q 020031 36 QRIIVFVGSPI----KHEKKVLEMIGRKLKKN---SVALDIVNFGEDDEGNTEKLEALLAAV 90 (332)
Q Consensus 36 qRIIvFVGSPi----~~dek~L~klaKkLKKn---nVavDII~FGe~~~~n~~kL~~fi~~v 90 (332)
--+|.|.++=. ...-..|.++.+++++. +|.|=.|++.... ++.+.+.+|++..
T Consensus 43 ~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~-d~~~~~~~~~~~~ 103 (200)
T 2b7k_A 43 FSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPAR-DSPAVLKEYLSDF 103 (200)
T ss_dssp CEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTT-CCHHHHHHHHTTS
T ss_pred EEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCC-CCHHHHHHHHHHc
Confidence 35667775433 23456678888888864 6666566654433 4688999998765
No 312
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=20.47 E-value=1.8e+02 Score=25.69 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.+++|-.. ...||||+|-.. ..+--+ ..|++.|.+.+|.|-.|.-|-..
T Consensus 156 vN~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~ 230 (291)
T 3ijr_A 156 INIFSYFHVTKAALSHLKQ----GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIW 230 (291)
T ss_dssp HHTHHHHHHHHHHHTTCCT----TCEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBC
T ss_pred HHhHHHHHHHHHHHHHHhh----CCEEEEEechHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCc
Confidence 4677778899999988532 234677777321 233333 35667777779999999999876
No 313
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=20.46 E-value=1.5e+02 Score=26.14 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHhhh-cCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKH-RQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKH-RqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+++.+++| +..+ +...||||+|-.. ..+--+ ..|++.|.+.||.|-.|+-|-..
T Consensus 148 vN~~g~~~l~~~~~~~~~~~~--~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~ 225 (299)
T 3t7c_A 148 VNLNGAWITARVAIPHIMAGK--RGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVA 225 (299)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--SCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBS
T ss_pred HhhHHHHHHHHHHHHHHHhcC--CCcEEEEECChhhccCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcc
Confidence 5677778889999888 3322 2456778887321 133333 34666777779999999999765
No 314
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=20.43 E-value=92 Score=27.34 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHHHHhhhc-CCccccceEEEEecCCCcccH--HHHHHHHHHhhhccceeeEEEecCCC
Q 020031 11 GELNLAAGIQVAQLALKHR-QNKKQQQRIIVFVGSPIKHEK--KVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 11 G~~~~~~gIqiA~LALKHR-qnK~~~qRIIvFVGSPi~~de--k~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
|.++--.|+-+...|+|.= ..+....+=|.|+..|=+|.- .=...+++.|++.++..|++..+|..
T Consensus 100 G~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~~~~d~~i~~ept 168 (268)
T 3t68_A 100 GAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPS 168 (268)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCTTSSSCCHHHHHHHHHHHTTCCCCEEEECSCC
T ss_pred CcccchHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCccCcccCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 5555555555444444321 111122345777777766532 13456667777777888988888765
No 315
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=20.28 E-value=1e+02 Score=31.26 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=34.3
Q ss_pred ccccceEEEEecCCCcccHH-HHHHHHHHhhhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 32 KKQQQRIIVFVGSPIKHEKK-VLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 32 K~~~qRIIvFVGSPi~~dek-~L~klaKkLKKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
+..+|||||||-.=+...|- .+-.|-+.. =.+|||.-|... -|. ..|++.+.
T Consensus 526 ~~~~~riiVFivGGvTysE~r~~~els~~~----~~~~vilG~T~i-~np---~~fl~~l~ 578 (592)
T 3puk_A 526 RKNGSRLIIFVIGGITYSEMRCAYEVSQAH----KSCEVIIGSTHI-LTP---RKLLDDIK 578 (592)
T ss_dssp CSCCSEEEEEEETCEEHHHHHHHHHHHHHC----CSSEEEEEESSE-ECH---HHHHHHHS
T ss_pred ccCCCeEEEEEeCCcCHHHHHHHHHHHhhc----CCceEEEeeCCc-CCH---HHHHHHHH
Confidence 34579999999988876553 333444332 127899999877 564 45666664
No 316
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=20.20 E-value=2.5e+02 Score=23.37 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 12 ELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 12 ~~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
.+|+...+.+.+.+++|-.... .| |+||+|-.. ..+--+ ..|++.|++.+|.|-.|.-|-..
T Consensus 101 ~~N~~g~~~l~~~~~~~~~~~~--~~-iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~ 177 (230)
T 3guy_A 101 ENNLSSAINVLRELVKRYKDQP--VN-VVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMA 177 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC--CE-EEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--Ce-EEEEeecccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCccc
Confidence 3567778888898988854322 25 456666322 123333 34566677778999999988766
No 317
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=20.16 E-value=1.3e+02 Score=23.34 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=29.8
Q ss_pred ceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCC
Q 020031 36 QRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 36 qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~ 76 (332)
+||++.-|+=+... =-..+|-+.+++.++.+.|-.++-..
T Consensus 5 mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~ 44 (109)
T 2l2q_A 5 MNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETR 44 (109)
T ss_dssp EEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTT
T ss_pred eEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHH
Confidence 67777777777666 55578888899999887776666544
No 318
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=20.14 E-value=1.5e+02 Score=25.99 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHHhhhcC--CccccceEEEEecCCC-------c-----ccHHHHH----HHHHHhhhccceeeEEEecC
Q 020031 13 LNLAAGIQVAQLALKHRQ--NKKQQQRIIVFVGSPI-------K-----HEKKVLE----MIGRKLKKNSVALDIVNFGE 74 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRq--nK~~~qRIIvFVGSPi-------~-----~dek~L~----klaKkLKKnnVavDII~FGe 74 (332)
+|+...+.+.+.++++-. .......-||||+|-. . ..+--++ .+++.|.+.+|.|-+|.-|-
T Consensus 135 vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~ 214 (276)
T 2b4q_A 135 LNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGR 214 (276)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred HHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEecc
Confidence 456666777787776532 1111114466776621 1 1233333 45666677799999999997
Q ss_pred CC
Q 020031 75 DD 76 (332)
Q Consensus 75 ~~ 76 (332)
..
T Consensus 215 v~ 216 (276)
T 2b4q_A 215 FP 216 (276)
T ss_dssp CC
T ss_pred Cc
Confidence 66
No 319
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=20.14 E-value=66 Score=29.56 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=32.6
Q ss_pred cceEEEEecCCCcccHHHHHHHHHHhhhccceeeEEEecCCCC-CcHHHHHHHH
Q 020031 35 QQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDE-GNTEKLEALL 87 (332)
Q Consensus 35 ~qRIIvFVGSPi~~dek~L~klaKkLKKnnVavDII~FGe~~~-~n~~kL~~fi 87 (332)
.+++|||+.+ .++...|++.|++.++.+..+ .|.... +-...++.|-
T Consensus 28 ~~~~LVF~~t-----~~~~~~l~~~L~~~g~~~~~l-hg~l~~~~r~~~~~~f~ 75 (300)
T 3i32_A 28 PDRAMVFTRT-----KAETEEIAQGLLRLGHPAQAL-HGDMSQGERERVMGAFR 75 (300)
T ss_dssp CSSEEEECSS-----HHHHHHHHHHHHTTTCCEEEE-CSCCCTHHHHHHHHHHH
T ss_pred CCCEEEEECC-----HHHHHHHHHHHHhCCCCEEEE-eCCCCHHHHHHHHHHhh
Confidence 5799999975 677889999999999888654 455441 1233455553
No 320
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}
Probab=20.08 E-value=1.4e+02 Score=25.33 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHhhhcCCccccceEEEEecCCCc-----------ccHHHH----HHHHHHhhhccceeeEEEecCCC
Q 020031 13 LNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIK-----------HEKKVL----EMIGRKLKKNSVALDIVNFGEDD 76 (332)
Q Consensus 13 ~~~~~gIqiA~LALKHRqnK~~~qRIIvFVGSPi~-----------~dek~L----~klaKkLKKnnVavDII~FGe~~ 76 (332)
+|+...+.+.+.++++-..+ . .-||||+|-.. ..+--+ ..|++.|++.+|.|-+|+-|-..
T Consensus 105 ~N~~~~~~l~~~~~~~~~~~--~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 180 (245)
T 3e9n_A 105 LNVIVPAELSRQLLPALRAA--S-GCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTN 180 (245)
T ss_dssp HHTHHHHHHHHHHHHHHHHH--T-CEEEEEC----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-
T ss_pred HHhHHHHHHHHHHHHHHhhc--C-CeEEEEcCcccccCCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCcc
Confidence 45666677788887764322 2 34677777432 123333 34566666778988888888765
No 321
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=20.04 E-value=1.7e+02 Score=22.36 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=33.7
Q ss_pred eEEEEe---cCC--CcccHHHHHHHHHHh-hhccceeeEEEecCCCCCcHHHHHHHHHHHh
Q 020031 37 RIIVFV---GSP--IKHEKKVLEMIGRKL-KKNSVALDIVNFGEDDEGNTEKLEALLAAVN 91 (332)
Q Consensus 37 RIIvFV---GSP--i~~dek~L~klaKkL-KKnnVavDII~FGe~~~~n~~kL~~fi~~vN 91 (332)
-+|.|. |.| ....-..|.++.+++ +..+|.|=.|++. .+.+.+..|+..-+
T Consensus 36 vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d----~~~~~~~~~~~~~~ 92 (150)
T 3fw2_A 36 LLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLD----VDKQQWKDAIKRDT 92 (150)
T ss_dssp EEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECC----SCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcC----CCHHHHHHHHHHhC
Confidence 345554 456 555677889999998 5555655555543 35688999997653
Done!