BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020032
MQFCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERLSKSR
PIASAAPVTFPEDFDNGPDGTYFDYDDMEARIMQHLAAARYFRRREMQRYPALDASQVVD
SSSAATASLMLPTNANSPNFCHGSSDTDIPTSVIRSTDNAQPPSSDPGTNRDGPFKSRVF
FRQSPPDSPRRPNPSEVFSFSESVKSKWSAASARYKESISKGTRSLKERLLSRNTSVKEL
SKEVQREMSAGIAGVAKMIERLDLASKRSGTPAPSSANAGGPSSALFKGKGVQESAMNRR
SAEVAPDIMSAAPSNVTGTNSAQLEVAHQRGL

High Scoring Gene Products

Symbol, full name Information P value
RHF1A
RING-H2 group F1A
protein from Arabidopsis thaliana 7.7e-48
CG7694 protein from Drosophila melanogaster 7.7e-06
RHB1A
RING-H2 finger B1A
protein from Arabidopsis thaliana 7.5e-05
AT5G41350 protein from Arabidopsis thaliana 0.00064
AT3G02290 protein from Arabidopsis thaliana 0.00083
AT5G15790 protein from Arabidopsis thaliana 0.00084

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020032
        (332 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129525 - symbol:RHF1A "RING-H2 group F1A" spe...   288  7.7e-48   2
FB|FBgn0038627 - symbol:CG7694 species:7227 "Drosophila m...   109  7.7e-06   1
TAIR|locus:505006415 - symbol:RHB1A "RING-H2 finger B1A" ...   114  7.5e-05   1
TAIR|locus:2177881 - symbol:AT5G41350 species:3702 "Arabi...   108  0.00064   1
TAIR|locus:2076542 - symbol:AT3G02290 species:3702 "Arabi...   108  0.00083   1
TAIR|locus:2143251 - symbol:AT5G15790 species:3702 "Arabi...   108  0.00084   1


>TAIR|locus:2129525 [details] [associations]
            symbol:RHF1A "RING-H2 group F1A" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0004842
            "ubiquitin-protein ligase activity" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0009561 "megagametogenesis" evidence=IGI]
            [GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
            [GO:0016567 "protein ubiquitination" evidence=IDA] [GO:0051726
            "regulation of cell cycle" evidence=IGI] [GO:0055046
            "microgametogenesis" evidence=IGI] [GO:0000165 "MAPK cascade"
            evidence=RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
            membrane" evidence=RCA] [GO:0009617 "response to bacterium"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009867
            "jasmonic acid mediated signaling pathway" evidence=RCA]
            [GO:0010310 "regulation of hydrogen peroxide metabolic process"
            evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
            response" evidence=RCA] [GO:0031348 "negative regulation of defense
            response" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] InterPro:IPR001841 Pfam:PF13639
            PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016020 GO:GO:0046872
            GO:GO:0008270 EMBL:Z97335 EMBL:AL161538 GO:GO:0051726
            Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0009561 GO:GO:0055046
            GO:GO:0004842 GO:GO:0010498 EMBL:DQ059122 EMBL:AK117968
            IPI:IPI00531618 PIR:C85155 RefSeq:NP_193158.2 UniGene:At.24002
            ProteinModelPortal:Q4TU14 SMR:Q4TU14 STRING:Q4TU14 PRIDE:Q4TU14
            EnsemblPlants:AT4G14220.1 GeneID:827062 KEGG:ath:AT4G14220
            TAIR:At4g14220 eggNOG:NOG325168 HOGENOM:HOG000070813
            InParanoid:Q4TU14 OMA:AISHVEH PhylomeDB:Q4TU14
            ProtClustDB:CLSN2717834 Genevestigator:Q4TU14 Uniprot:Q4TU14
        Length = 371

 Score = 288 (106.4 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 58/106 (54%), Positives = 76/106 (71%)

Query:     8 VTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERLSKSRPIASAAP 67
             VTSCKHEYHLQCI+EWSQRSKECPICWQ FVL++PA QELLAA+E ERL K+R I+S++P
Sbjct:    61 VTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPASQELLAAVEKERLLKTRNISSSSP 120

Query:    68 VTFP---EDFDNGPDGTYFD-YDDMEARIMQHLAAAR-YFRRREMQ 108
             ++     +DF +  + + F  +D+   R +   A  R   RRR+ Q
Sbjct:   121 ISIHHSHDDFHSEEEESQFSSFDEQFLRHLTEAAHRRCLLRRRDGQ 166

 Score = 229 (85.7 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 50/97 (51%), Positives = 65/97 (67%)

Query:   209 SAASARYKESISKGTRSLKERLLSRNTSVKELSKEVQREMSAGIAGVAKMIERLDLASKR 268
             +AASA+YKESISK  + LKE+LL+RN SVKELSK VQREM+AGIAGVA+MIER+D +SKR
Sbjct:   262 AAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMDFSSKR 321

Query:   269 XXXXXXXXXXXXXXXXX--LFKGKGVQESAMNRRSAE 303
                                 FKGK V+ ++ +  + +
Sbjct:   322 FGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNGD 358

 Score = 46 (21.3 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query:    30 CPICWQQFVLKEPA----CQE---LLAAIESERLSKSRPI 62
             C IC + F L++P+    C+    L   IE  + SK  PI
Sbjct:    46 CSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPI 85


>FB|FBgn0038627 [details] [associations]
            symbol:CG7694 species:7227 "Drosophila melanogaster"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
            SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 EMBL:AE014297
            GO:GO:0046872 GO:GO:0016874 GO:GO:0008270 GO:GO:0016567
            Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7
            GeneTree:ENSGT00530000062967 eggNOG:NOG294567 EMBL:BT001518
            RefSeq:NP_001138076.1 RefSeq:NP_650729.1 UniGene:Dm.14942
            ProteinModelPortal:Q9VE61 SMR:Q9VE61 PaxDb:Q9VE61 PRIDE:Q9VE61
            EnsemblMetazoa:FBtr0083632 EnsemblMetazoa:FBtr0290211 GeneID:42230
            KEGG:dme:Dmel_CG7694 UCSC:CG7694-RA FlyBase:FBgn0038627
            InParanoid:Q9VE61 OMA:HEFHEEC OrthoDB:EOG4DV43R PhylomeDB:Q9VE61
            GenomeRNAi:42230 NextBio:827789 Uniprot:Q9VE61
        Length = 147

 Score = 109 (43.4 bits), Expect = 7.7e-06, P = 7.7e-06
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query:     6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERLSKSR 60
             +++  CKHE+H +CIL W +++  CP+C  +    +P  +EL    + E   + R
Sbjct:    83 YRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEELRRFRQDEANRRER 137


>TAIR|locus:505006415 [details] [associations]
            symbol:RHB1A "RING-H2 finger B1A" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0048573
            "photoperiodism, flowering" evidence=RCA] InterPro:IPR001841
            Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.40.10 InterPro:IPR013083 HOGENOM:HOG000005881
            EMBL:BT024583 EMBL:AK228408 IPI:IPI00549137 RefSeq:NP_567171.1
            RefSeq:NP_974488.1 UniGene:At.10854 ProteinModelPortal:Q2HIJ8
            SMR:Q2HIJ8 PRIDE:Q2HIJ8 EnsemblPlants:AT4G00335.1
            EnsemblPlants:AT4G00335.2 GeneID:828093 KEGG:ath:AT4G00335
            TAIR:At4g00335 eggNOG:NOG324180 InParanoid:Q2HIJ8 OMA:WIERSDR
            PhylomeDB:Q2HIJ8 ProtClustDB:CLSN2697998 Genevestigator:Q2HIJ8
            Uniprot:Q2HIJ8
        Length = 190

 Score = 114 (45.2 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query:     9 TSCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41
             T C+HE+HL C+LEW +RS  CPIC ++ V  +
Sbjct:   155 TKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187


>TAIR|locus:2177881 [details] [associations]
            symbol:AT5G41350 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0006914 "autophagy" evidence=RCA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=RCA]
            InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
            GO:GO:0005739 EMBL:CP002688 GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.40.10 InterPro:IPR013083 ProtClustDB:CLSN2697998
            EMBL:AY048293 EMBL:AY143828 IPI:IPI00528415 RefSeq:NP_568590.1
            UniGene:At.6481 ProteinModelPortal:Q94AB7 SMR:Q94AB7 IntAct:Q94AB7
            PRIDE:Q94AB7 EnsemblPlants:AT5G41350.1 GeneID:834137
            KEGG:ath:AT5G41350 TAIR:At5g41350 eggNOG:NOG314203
            InParanoid:Q94AB7 OMA:AYYYYPR PhylomeDB:Q94AB7
            Genevestigator:Q94AB7 Uniprot:Q94AB7
        Length = 212

 Score = 108 (43.1 bits), Expect = 0.00064, P = 0.00064
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query:     8 VTSCKHEYHLQCILEWSQRSKECPICWQQFV 38
             V  C H +HL CILEW +RS+ CP+C ++ V
Sbjct:   176 VAKCDHHFHLACILEWMERSETCPVCNKEMV 206


>TAIR|locus:2076542 [details] [associations]
            symbol:AT3G02290 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
            SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005737
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0016874
            GO:GO:0008270 GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083
            EMBL:AC009755 EMBL:AK221581 EMBL:BT024610 EMBL:AY085549
            IPI:IPI00535295 IPI:IPI00846182 RefSeq:NP_566169.1
            RefSeq:NP_974210.2 UniGene:At.41159 ProteinModelPortal:Q8LE94
            SMR:Q8LE94 EnsemblPlants:AT3G02290.1 GeneID:821179
            KEGG:ath:AT3G02290 TAIR:At3g02290 eggNOG:NOG311478
            HOGENOM:HOG000005881 InParanoid:Q8LE94 OMA:RIYIREP PhylomeDB:Q8LE94
            ProtClustDB:CLSN2917067 Genevestigator:Q8LE94 Uniprot:Q8LE94
        Length = 231

 Score = 108 (43.1 bits), Expect = 0.00083, P = 0.00083
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query:     8 VTSCKHEYHLQCILEWSQRSKECPIC 33
             VT C H +HL CI EW +RS+ CP+C
Sbjct:   196 VTKCSHHFHLSCIYEWMERSENCPVC 221


>TAIR|locus:2143251 [details] [associations]
            symbol:AT5G15790 species:3702 "Arabidopsis thaliana"
            [GO:0008270 "zinc ion binding" evidence=IEA;ISS] InterPro:IPR001841
            Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AL391144
            HOGENOM:HOG000005881 UniGene:At.10163 UniGene:At.49025
            EMBL:AY140056 EMBL:BT006270 EMBL:AK229146 IPI:IPI00521018
            PIR:T51408 RefSeq:NP_197083.1 RefSeq:NP_974785.1
            ProteinModelPortal:Q9LFU7 SMR:Q9LFU7 IntAct:Q9LFU7
            EnsemblPlants:AT5G15790.1 EnsemblPlants:AT5G15790.2 GeneID:831435
            KEGG:ath:AT5G15790 TAIR:At5g15790 eggNOG:NOG273668
            InParanoid:Q9LFU7 OMA:SHSHEEA PhylomeDB:Q9LFU7
            ProtClustDB:CLSN2687490 Genevestigator:Q9LFU7 Uniprot:Q9LFU7
        Length = 232

 Score = 108 (43.1 bits), Expect = 0.00084, P = 0.00084
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query:     8 VTSCKHEYHLQCILEWSQRSKECPIC 33
             VT C H +HL CI EW +RS+ CP+C
Sbjct:   197 VTKCSHHFHLSCIYEWMERSENCPVC 222


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       271   0.00098  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  204 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.01u 0.14s 23.15t   Elapsed:  00:00:01
  Total cpu time:  23.01u 0.14s 23.15t   Elapsed:  00:00:01
  Start:  Mon May 20 22:57:04 2013   End:  Mon May 20 22:57:05 2013

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