BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020032
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L +V C HE+H +C+ +W + ++ CPIC
Sbjct: 38 LLRVLPCNHEFHAKCVDKWLKANRTCPIC 66
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPIC 33
+ CKH +H +C+++W + K CP+C
Sbjct: 33 ICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 34.7 bits (78), Expect = 0.076, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 4 CLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLK 40
C+ C H +H C+ W +++ CP+C Q +V++
Sbjct: 41 CVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQF 37
C H +H C+ W Q+S CP+C F
Sbjct: 61 CHHYFHKPCVSIWLQKSGTCPVCRCMF 87
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPICWQQFV 38
+ C H + +CI +WS R + CPIC Q
Sbjct: 29 ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 10 SCKHEYHLQCILEWSQRSKECPIC 33
+C H + CI EW +R ECPIC
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPIC 93
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 32.0 bits (71), Expect = 0.44, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
C H +H CI+ W ++ CP+C
Sbjct: 36 CNHLFHDSCIVPWLEQHDSCPVC 58
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 10 SCKHEYHLQCILEWSQRSKECPIC 33
+C H + CI EW +R ECPIC
Sbjct: 81 NCAHSFCSYCINEWMKRKIECPIC 104
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 10 SCKHEYHLQCILEWSQRSKECPIC 33
+C H + CI EW +R ECPIC
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPIC 93
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 31.2 bits (69), Expect = 0.80, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
C H +H C+ +W +K+CPIC
Sbjct: 35 CMHLFHQVCVDQWLITNKKCPIC 57
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPIC 33
+ C H + CI+ + + SK CPIC
Sbjct: 27 IIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPIC 33
+ C H + CI+ + + SK CPIC
Sbjct: 31 IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 11 CKHEYHLQCILEWSQRSKECPI 32
C H +H CI W + + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 11 CKHEYHLQCILEWSQRSKECPI 32
C H +H CI W + + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 11 CKHEYHLQCILEWSQRSKECPI 32
C H +H CI W + + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPICWQQ 36
+ C H + CI+ + + SK CPIC Q
Sbjct: 31 IIECLHSFCKTCIVRYLETSKYCPICDVQ 59
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 11 CKHEYHLQCILEWSQRSKECPI 32
C H +H CI W + + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 11 CKHEYHLQCILEWSQRSKECPI 32
C H +H CI W + + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
C H +H +C+ W CP+C
Sbjct: 27 CGHGFHAECVDMWLGSHSTCPLC 49
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 11 CKHEYHLQCILEWSQRSKECPI 32
C H +H CI W + + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,589,780
Number of Sequences: 62578
Number of extensions: 238455
Number of successful extensions: 565
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 24
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)