BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020032
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 175/296 (59%), Gaps = 18/296 (6%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERLSKSR---PIAS 64
VTSCKHEYHLQCI+EWSQRSKECPICWQ FVL++PA QELLAA+E ERL K+R +
Sbjct: 61 VTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPASQELLAAVEKERLLKTRNISSSSP 120
Query: 65 AAPVTFPEDFDNGPDGTYFDYDDMEARIMQHLAAARY----FRRREMQRYPALDASQVVD 120
+ +DF + + + F D + ++HL A + RRR+ Q + D
Sbjct: 121 ISIHHSHDDFHSEEEESQFSSFD--EQFLRHLTEAAHRRCLLRRRDGQ--ISSSLVSSSD 176
Query: 121 SSSAATASLMLPTNANSPNFCHGSSDTDIPTSVIRSTDNAQPPSSDPGTNRDGPFKSRVF 180
++ L+ ++ + + P+ + SS P + +G SR+
Sbjct: 177 PTTIHPTDLVNLYRLSAISHVEHQNSNPCPSPGSMTPSPVSGHSSIPADSNNG---SRIS 233
Query: 181 FRQSPPDSPRRPNPSEVFSFSESVKSKWSAASARYKESISKGTRSLKERLLSRNTSVKEL 240
SP S + P E S E++KSK +AASA+YKESISK + LKE+LL+RN SVKEL
Sbjct: 234 PGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKEL 293
Query: 241 SKEVQREMSAGIAGVAKMIERLDLASKRSGTPA---PSSANAGGPSSALFKGKGVQ 293
SK VQREM+AGIAGVA+MIER+D +SKR G A S+A A G + + FKGK V+
Sbjct: 294 SKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFS-FKGKRVE 348
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 156/276 (56%), Gaps = 22/276 (7%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERLSKSRPIASAAP 67
+TSCKHEYHLQCILEW QRS +CP+CWQ LK+P QELL A+E ER + P +A
Sbjct: 48 LTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATI 107
Query: 68 VTFPE--DFDNGPDGTYFDYDDMEARIMQHLAA------ARYFRRREMQRYPALDASQ-- 117
P DF+ D ++E RI+QHLAA AR+ RRE R +
Sbjct: 108 FRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQ 167
Query: 118 -VVDSSSAATASLMLPTNANSPNFCHGSSDT--DIPTSVI---RSTDNAQPP-SSDPGTN 170
+V SS +S S SDT ++P + + N QPP SS P
Sbjct: 168 FMVFSSQPNASSPPPHPPMPSSPSQRDESDTVSNLPHNALGEGSHQSNTQPPTSSHP--R 225
Query: 171 RDGPFKSRVFFR---QSPPDSPRRPNPSEVFSFSESVKSKWSAASARYKESISKGTRSLK 227
+ P S R QS P R PSE+ SFSES+KS+ +A S RYKESISK TR+ K
Sbjct: 226 QVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWK 285
Query: 228 ERLLSRNTSVKELSKEVQREMSAGIAGVAKMIERLD 263
+RL SRNTS+ +L EV+RE+SAGIA V++M+ERL+
Sbjct: 286 DRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLE 321
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQEL 47
+++ CKHE+H +CIL W +++ CP+C + +P +EL
Sbjct: 83 YRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEEL 124
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41
VT C H +HL CI EW +RS+ CP+C + E
Sbjct: 196 VTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNE 229
>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2
Length = 695
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 6 FQVTSCKHEYHLQCILEWSQRSKECPIC 33
+ +T C H YH QC+L+W + CP+C
Sbjct: 661 YMLTPCHHLYHRQCLLQWMETRSICPVC 688
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQFVL 39
C HEYH+ CI W + CPIC + ++
Sbjct: 721 CSHEYHIHCIDRWLSENSTCPICRRAVLV 749
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQFVL 39
C HEYH+ CI W + CPIC + ++
Sbjct: 586 CSHEYHIHCIDRWLSENSTCPICRRAVLV 614
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQFVL 39
C HEYH+ CI W + CPIC + ++
Sbjct: 603 CSHEYHVHCIDRWLSENSTCPICRRAVLV 631
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 10 SCKHEYHLQCILEWSQRSKECPICWQQF 37
SC H++ +C+ EWS+ ECP+C Q F
Sbjct: 117 SCMHQFCFKCLCEWSKIKPECPLCKQPF 144
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
C HEYH+ CI W + CPIC
Sbjct: 588 CSHEYHVHCIDRWLSENSTCPIC 610
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
C HEYH+ CI W + CPIC
Sbjct: 564 CSHEYHVHCIDRWLSENSTCPIC 586
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L +V C HE+H +C+ +W + ++ CPIC
Sbjct: 392 LLRVLPCNHEFHTKCVDKWLKANRTCPIC 420
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQFVLKEP 42
CKH YH C+L W + CP+C + +P
Sbjct: 242 CKHLYHKDCLLPWLELHNSCPVCRHELPTDDP 273
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L +V C HE+H +C+ +W + ++ CPIC
Sbjct: 475 LLRVLPCNHEFHAKCVDKWLKANRTCPIC 503
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L +V C HE+H +C+ +W + ++ CPIC
Sbjct: 478 LLRVLPCNHEFHAKCVDKWLKGNRTCPIC 506
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 10 SCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41
SC H +H++CI W Q + CPIC ++ LK+
Sbjct: 106 SCDHWFHVECIDSWLQSNSTCPICRKRVCLKQ 137
>sp|Q5R8A2|APC11_PONAB Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11
PE=3 SV=1
Length = 84
Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 11 CKHEYHLQCILEW---SQRSKECPICWQQFVLKE 41
C H +H+ CIL+W Q + CP+C Q++ KE
Sbjct: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>sp|Q9CPX9|APC11_MOUSE Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11
PE=3 SV=1
Length = 84
Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 11 CKHEYHLQCILEW---SQRSKECPICWQQFVLKE 41
C H +H+ CIL+W Q + CP+C Q++ KE
Sbjct: 51 CSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84
>sp|Q9NYG5|APC11_HUMAN Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11
PE=1 SV=1
Length = 84
Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 11 CKHEYHLQCILEW---SQRSKECPICWQQFVLKE 41
C H +H+ CIL+W Q + CP+C Q++ KE
Sbjct: 51 CSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11
PE=3 SV=1
Length = 84
Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 11 CKHEYHLQCILEW---SQRSKECPICWQQFVLKE 41
C H +H+ CIL+W Q + CP+C Q++ KE
Sbjct: 51 CSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L +V C HE+H +C+ +W + ++ CPIC
Sbjct: 408 LLRVLPCNHEFHAKCVDKWLKTNRTCPIC 436
>sp|Q9M9L0|APC11_ARATH Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana
GN=APC11 PE=1 SV=2
Length = 84
Score = 39.3 bits (90), Expect = 0.043, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 10 SCKHEYHLQCILEW--SQRSK-ECPICWQQFVLKE 41
+C H +HL CIL+W SQ S+ CP+C +++ KE
Sbjct: 50 ACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKE 84
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
CKH YH +CI W + +K CP+C
Sbjct: 306 CKHSYHSECINNWLKINKVCPVC 328
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQF 37
C H++ +C+ EWS+ ECP+C Q F
Sbjct: 120 CLHKFCFRCVQEWSKNKAECPLCKQPF 146
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L +V C HE+H +C+ +W + ++ CPIC
Sbjct: 367 LLRVLPCNHEFHAKCVDKWLKANRTCPIC 395
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQF 37
C H++ +C+ EWS+ ECP+C Q F
Sbjct: 119 CLHKFCFRCVQEWSKNKAECPLCKQPF 145
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2
(strain K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 23/92 (25%)
Query: 3 FCLFQVTS------CKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERL 56
CL +T C H + L CI W + CP+C K P Q L+ ++ S+
Sbjct: 15 ICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLC------KAPV-QSLIHSVASDEC 67
Query: 57 SKSRPIASA----------APVTFPEDFDNGP 78
+ P+ A V + ED+D GP
Sbjct: 68 FEEIPVGGGPGADGALEPDAAVIWGEDYDAGP 99
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L +V C HE+H +C+ +W + ++ CPIC
Sbjct: 310 LLRVLPCNHEFHAKCVDKWLKANRTCPIC 338
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1
(strain Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 23/92 (25%)
Query: 3 FCLFQVTS------CKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERL 56
CL +T C H + L CI W + CP+C K P Q L+ ++ S+
Sbjct: 15 ICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLC------KAPV-QSLIHSVASDEC 67
Query: 57 SKSRPIASA----------APVTFPEDFDNGP 78
+ P+ A V + ED+D GP
Sbjct: 68 FEEIPVGGGPGADGALEPDAAVIWGEDYDAGP 99
>sp|O80927|ATL33_ARATH RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2
SV=2
Length = 235
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41
L Q++ CKH +H+ CI W + CPIC +K+
Sbjct: 155 LRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVKQ 191
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPICWQQFVLK 40
T C H Y +C+L W + SK CP C Q+ +
Sbjct: 97 TTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQ 129
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 10 SCKHEYHLQCILEWSQRSKECPICWQQFV 38
+C H + CI EW R +CP+CWQ
Sbjct: 406 NCAHSFCQHCISEWRNRKDKCPMCWQNIT 434
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQ 35
C HE+H+ CI W + CPIC Q
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPICRQ 674
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQFVLKEPA 43
C H +H++CI W CP C Q +L++P+
Sbjct: 133 CNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPS 165
>sp|Q5UQ40|UBC4_MIMIV Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R795 PE=3 SV=1
Length = 1297
Score = 37.7 bits (86), Expect = 0.12, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 7 QVTSCKHEYHLQCILEWSQRSKECPIC---WQ 35
Q SC H +H CI W K CP+C WQ
Sbjct: 101 QSVSCSHSFHACCISRWLHTKKTCPLCNIEWQ 132
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
C H HL C+ W +RS+ CPIC
Sbjct: 377 CGHILHLSCLKNWMERSQTCPIC 399
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 VTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPA-CQELLAAIESERLSKSR 60
+T+C H +H +CI +W + +K CP+C + P +EL+ + E ++R
Sbjct: 131 LTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHENR 184
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 10 SCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERLSKSRPI 62
+CKH +H+ CI W CP+C Q EP + ++++ +S S P+
Sbjct: 94 NCKHTFHVHCIDMWFHSHSSCPLCRSQI---EPFAGGVKSSMDEVAISISDPV 143
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQFVLKEPA 43
CKH YH +CI +W +K CP+C + V EP+
Sbjct: 215 CKHVYHSECISKWLSINKVCPVCNSE-VFGEPS 246
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 6 FQVTSCKHEYHLQCILEWSQRSKECPIC 33
+V SC HE+H C+ W + + CP+C
Sbjct: 285 LRVISCLHEFHRNCVDPWLHQHRTCPLC 312
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 5 LFQVTSCKHEYHLQCILEWSQRSKECPIC 33
L Q+ C H +HL+CI W + + CP+C
Sbjct: 160 LRQLPDCNHLFHLKCIDTWLRLNPTCPVC 188
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 10 SCKHEYHLQCILEWSQRSKECPICWQQFV 38
+C H + CI W +R +ECPIC Q+ V
Sbjct: 396 NCAHSFCSYCIKSWKKRKEECPICRQEIV 424
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 11 CKHEYHLQCILEWSQRSKECPIC 33
C H +HL+CI EW + CP+C
Sbjct: 175 CFHAFHLECIDEWLRSHPNCPLC 197
>sp|Q9HC56|PCDH9_HUMAN Protocadherin-9 OS=Homo sapiens GN=PCDH9 PE=1 SV=2
Length = 1237
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 77 GPDGTYFDYDDMEARIMQHLAAARYFRRREMQRY----PALDASQVVDSSSAATASLMLP 132
GP+ ++FD D R L A+R F R E +R+ A D S AA +L
Sbjct: 509 GPNASFFDLD----RKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVIVTVLD 564
Query: 133 TNANSPNFCH 142
N NSP F H
Sbjct: 565 ENDNSPKFTH 574
>sp|Q555H8|LTN1_DICDI E3 ubiquitin-protein ligase listerin OS=Dictyostelium discoideum
GN=rnf160 PE=3 SV=1
Length = 1864
Score = 36.6 bits (83), Expect = 0.30, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 6 FQVTSCKHEYHLQCILEWSQRSKE--CPIC 33
FQ +CK+++H CI +W Q S + CP+C
Sbjct: 1830 FQCKTCKNKFHAGCIYKWFQTSHKSNCPLC 1859
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 10 SCKHEYHLQCILEWSQRSKECPICWQQFVLKEPACQELLAAIESERLSKSRPIASAA 66
+C+H +H+ CI W CP+C + E LA IES ++ R + A
Sbjct: 137 NCQHTFHVDCIDMWFHSHSTCPLCR--------SLVESLAGIESTAAAREREVVIAV 185
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 6 FQVTSCKHEYHLQCILEWSQRSKE-CPICWQQFV 38
++ C H YH +C+ W ++K+ CP+C Q+ V
Sbjct: 253 LRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 11 CKHEYHLQCILEWSQRSKECPICWQQFVLKEPA 43
C+H +H+ CI +W ++ CP+C + ++E +
Sbjct: 142 CRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDS 174
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 6 FQVTSCKHEYHLQCILEWSQRSKE-CPICWQQFV 38
++ C H YH +C+ W ++K+ CP+C Q+ V
Sbjct: 253 LRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 6 FQVTSCKHEYHLQCILEWSQRSKE-CPICWQQFV 38
++ C H YH +C+ W ++K+ CP+C Q+ V
Sbjct: 253 LRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,813,677
Number of Sequences: 539616
Number of extensions: 4815965
Number of successful extensions: 13699
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 13325
Number of HSP's gapped (non-prelim): 474
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)