Query 020032
Match_columns 332
No_of_seqs 213 out of 1395
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.2 1.1E-11 3.8E-16 93.6 3.4 53 3-55 18-72 (78)
2 2y43_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 94.8 5.2 58 3-60 32-91 (99)
3 3lrq_A E3 ubiquitin-protein li 99.1 2.6E-11 9E-16 96.8 3.9 57 3-59 32-91 (100)
4 2kr4_A Ubiquitin conjugation f 99.1 4.1E-11 1.4E-15 93.7 4.6 53 3-55 24-77 (85)
5 3ztg_A E3 ubiquitin-protein li 99.1 1.1E-10 3.8E-15 90.7 6.3 55 3-57 23-82 (92)
6 2kre_A Ubiquitin conjugation f 99.1 6E-11 2E-15 95.9 4.8 54 3-56 39-93 (100)
7 2csy_A Zinc finger protein 183 99.1 4.3E-11 1.5E-15 91.3 3.6 36 3-38 25-60 (81)
8 4ayc_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 100.3 3.8 39 3-41 63-101 (138)
9 3fl2_A E3 ubiquitin-protein li 99.1 8.8E-11 3E-15 96.4 5.3 52 3-54 62-116 (124)
10 1wgm_A Ubiquitin conjugation f 99.0 1.6E-10 5.5E-15 93.1 5.6 55 3-57 32-88 (98)
11 2djb_A Polycomb group ring fin 99.0 1E-10 3.5E-15 87.5 4.1 40 3-42 25-65 (72)
12 2ea6_A Ring finger protein 4; 99.0 9.1E-11 3.1E-15 85.7 3.1 34 6-39 35-68 (69)
13 3ng2_A RNF4, snurf, ring finge 99.0 9.8E-11 3.4E-15 86.3 3.1 37 6-42 30-66 (71)
14 3dpl_R Ring-box protein 1; ubi 99.0 9.7E-11 3.3E-15 96.0 2.9 38 3-40 65-102 (106)
15 2ecl_A Ring-box protein 2; RNF 99.0 9.4E-11 3.2E-15 90.5 2.5 35 7-41 44-78 (81)
16 2kiz_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 85.8 3.1 36 5-40 29-64 (69)
17 2ecy_A TNF receptor-associated 99.0 1.8E-10 6.1E-15 84.7 3.7 39 3-41 25-64 (66)
18 2xeu_A Ring finger protein 4; 99.0 1.6E-10 5.3E-15 83.3 2.9 37 6-42 23-59 (64)
19 2ysl_A Tripartite motif-contai 99.0 1.9E-10 6.7E-15 85.3 3.5 39 3-41 30-71 (73)
20 2ckl_A Polycomb group ring fin 99.0 3.4E-10 1.2E-14 90.8 5.0 51 3-53 25-81 (108)
21 1z6u_A NP95-like ring finger p 99.0 3.5E-10 1.2E-14 97.1 5.3 52 3-54 88-142 (150)
22 2ecm_A Ring finger and CHY zin 99.0 1.6E-10 5.4E-15 81.4 2.5 34 5-38 21-54 (55)
23 2ect_A Ring finger protein 126 99.0 1.6E-10 5.4E-15 87.2 2.6 35 7-41 32-66 (78)
24 2d8t_A Dactylidin, ring finger 99.0 7.3E-11 2.5E-15 88.1 0.8 37 3-39 25-61 (71)
25 2c2l_A CHIP, carboxy terminus 99.0 2.6E-10 9E-15 102.8 4.5 53 3-55 218-272 (281)
26 2yur_A Retinoblastoma-binding 99.0 2.4E-10 8.1E-15 86.3 3.5 39 3-41 25-66 (74)
27 2l0b_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 90.1 2.8 33 6-38 56-88 (91)
28 1jm7_A BRCA1, breast cancer ty 99.0 2E-10 6.9E-15 91.6 2.8 40 3-42 31-73 (112)
29 1iym_A EL5; ring-H2 finger, ub 99.0 2.6E-10 9.1E-15 80.5 3.0 33 6-38 21-54 (55)
30 1x4j_A Ring finger protein 38; 98.9 2.1E-10 7.1E-15 86.3 2.3 33 7-39 40-72 (75)
31 2ecw_A Tripartite motif-contai 98.9 4.4E-10 1.5E-14 84.8 4.1 39 3-41 29-73 (85)
32 2ep4_A Ring finger protein 24; 98.9 3E-10 1E-14 84.9 2.5 33 7-39 32-64 (74)
33 2egp_A Tripartite motif-contai 98.9 2E-10 6.9E-15 86.3 1.5 39 3-41 22-67 (79)
34 2ct2_A Tripartite motif protei 98.9 4.7E-10 1.6E-14 85.7 3.3 36 6-41 32-70 (88)
35 1v87_A Deltex protein 2; ring- 98.9 5.3E-10 1.8E-14 90.0 3.7 32 8-39 58-94 (114)
36 2ckl_B Ubiquitin ligase protei 98.9 7.7E-10 2.6E-14 94.9 4.9 52 3-54 64-119 (165)
37 2ecv_A Tripartite motif-contai 98.9 5.8E-10 2E-14 84.1 3.6 39 3-41 29-73 (85)
38 1chc_A Equine herpes virus-1 r 98.9 3.5E-10 1.2E-14 83.1 2.1 33 6-38 19-51 (68)
39 1jm7_B BARD1, BRCA1-associated 98.9 4.5E-10 1.5E-14 91.6 2.7 54 3-58 32-87 (117)
40 2yu4_A E3 SUMO-protein ligase 98.9 1.3E-09 4.3E-14 86.5 4.7 56 3-58 17-83 (94)
41 4a0k_B E3 ubiquitin-protein li 98.9 2.3E-10 7.9E-15 95.8 0.0 37 4-40 77-113 (117)
42 2ecn_A Ring finger protein 141 98.9 3E-10 1E-14 84.0 0.3 35 7-41 28-62 (70)
43 3l11_A E3 ubiquitin-protein li 98.8 7.4E-10 2.5E-14 89.6 2.4 37 3-39 25-62 (115)
44 1rmd_A RAG1; V(D)J recombinati 98.8 2.2E-09 7.6E-14 86.9 4.5 40 3-42 33-73 (116)
45 3hct_A TNF receptor-associated 98.8 1.7E-09 5.7E-14 88.4 3.5 51 3-53 28-80 (118)
46 2ysj_A Tripartite motif-contai 98.8 2.5E-09 8.6E-14 77.7 3.7 31 3-33 30-63 (63)
47 1g25_A CDK-activating kinase a 98.8 3.1E-09 1E-13 77.8 3.8 36 7-42 22-58 (65)
48 4ap4_A E3 ubiquitin ligase RNF 98.8 2.3E-09 8E-14 86.7 3.4 37 6-42 27-63 (133)
49 4ap4_A E3 ubiquitin ligase RNF 98.8 2.3E-09 7.9E-14 86.7 2.8 38 5-42 91-128 (133)
50 2f42_A STIP1 homology and U-bo 98.7 5.2E-09 1.8E-13 93.4 4.7 54 3-56 116-171 (179)
51 2ecj_A Tripartite motif-contai 98.7 5.2E-09 1.8E-13 74.1 3.0 31 3-33 25-58 (58)
52 3knv_A TNF receptor-associated 98.6 5.9E-09 2E-13 88.7 1.3 37 3-39 41-78 (141)
53 1bor_A Transcription factor PM 98.6 9.7E-09 3.3E-13 74.0 0.4 35 3-40 16-50 (56)
54 3hcs_A TNF receptor-associated 98.5 3.4E-08 1.2E-12 84.8 3.5 50 3-52 28-79 (170)
55 2ct0_A Non-SMC element 1 homol 98.5 5E-08 1.7E-12 75.7 3.1 32 10-41 33-66 (74)
56 3htk_C E3 SUMO-protein ligase 98.5 4.3E-08 1.5E-12 92.5 3.0 53 2-54 190-248 (267)
57 1e4u_A Transcriptional repress 98.5 7.6E-08 2.6E-12 74.6 3.7 32 10-41 32-64 (78)
58 2d8s_A Cellular modulator of i 98.5 5.3E-08 1.8E-12 76.0 2.5 36 5-40 29-71 (80)
59 4ic3_A E3 ubiquitin-protein li 98.4 4.4E-08 1.5E-12 74.2 1.6 33 3-39 34-67 (74)
60 2vje_A E3 ubiquitin-protein li 98.4 6.8E-08 2.3E-12 71.6 2.2 35 4-38 19-56 (64)
61 2vje_B MDM4 protein; proto-onc 98.4 8.9E-08 3.1E-12 70.8 2.0 34 5-38 19-55 (63)
62 2bay_A PRE-mRNA splicing facto 98.3 1.5E-07 5.2E-12 69.8 1.7 40 3-42 13-53 (61)
63 2ecg_A Baculoviral IAP repeat- 98.2 4.5E-07 1.5E-11 68.6 2.8 33 3-39 35-68 (75)
64 2yho_A E3 ubiquitin-protein li 98.1 6.3E-07 2.2E-11 69.1 0.9 33 3-39 28-61 (79)
65 3vk6_A E3 ubiquitin-protein li 98.1 2.1E-06 7.3E-11 70.6 3.6 33 7-39 16-49 (101)
66 2ea5_A Cell growth regulator w 98.0 3.5E-06 1.2E-10 63.3 2.8 33 3-39 25-58 (68)
67 1wim_A KIAA0161 protein; ring 97.8 4E-06 1.4E-10 65.6 0.6 31 9-39 24-66 (94)
68 1vyx_A ORF K3, K3RING; zinc-bi 97.7 1.9E-05 6.6E-10 58.4 3.3 34 6-39 19-59 (60)
69 2ko5_A Ring finger protein Z; 91.9 0.048 1.6E-06 44.5 1.3 34 7-40 41-74 (99)
70 3m62_A Ubiquitin conjugation f 90.9 0.18 6.3E-06 54.9 4.9 54 3-56 901-956 (968)
71 2jun_A Midline-1; B-BOX, TRIM, 86.6 0.24 8.1E-06 38.5 1.5 23 3-25 14-38 (101)
72 2lri_C Autoimmune regulator; Z 67.6 1.7 5.7E-05 32.5 1.0 28 10-37 29-60 (66)
73 2o35_A Hypothetical protein DU 63.3 2.6 9E-05 34.6 1.5 13 14-26 42-54 (105)
74 3fyb_A Protein of unknown func 62.8 2.7 9.3E-05 34.5 1.5 13 14-26 41-53 (104)
75 2jmo_A Parkin; IBR, E3 ligase, 59.3 0.91 3.1E-05 34.8 -1.9 16 10-25 55-70 (80)
76 3i2d_A E3 SUMO-protein ligase 52.7 9.1 0.00031 37.6 3.5 37 7-43 264-304 (371)
77 4fo9_A E3 SUMO-protein ligase 46.3 12 0.00041 36.6 3.2 37 7-43 230-270 (360)
78 2l5u_A Chromodomain-helicase-D 44.8 4 0.00014 29.6 -0.3 27 10-36 28-58 (61)
79 1weo_A Cellulose synthase, cat 44.2 17 0.00058 29.3 3.2 29 10-38 40-69 (93)
80 1f62_A Transcription factor WS 43.8 5.5 0.00019 27.4 0.3 26 10-35 20-49 (51)
81 1z60_A TFIIH basal transcripti 42.6 11 0.00037 27.8 1.7 25 9-33 34-58 (59)
82 2ct7_A Ring finger protein 31; 42.0 2.6 9E-05 32.4 -1.8 17 10-26 48-64 (86)
83 2k16_A Transcription initiatio 39.8 4 0.00014 30.4 -1.0 29 10-38 38-70 (75)
84 1mm2_A MI2-beta; PHD, zinc fin 38.9 5.9 0.0002 28.7 -0.2 28 10-37 26-57 (61)
85 3u5n_A E3 ubiquitin-protein li 36.0 4.6 0.00016 35.6 -1.4 27 10-36 24-54 (207)
86 2gmg_A Hypothetical protein PF 35.5 10 0.00035 31.2 0.7 29 5-38 67-95 (105)
87 2lbm_A Transcriptional regulat 33.7 41 0.0014 28.6 4.2 27 10-36 80-117 (142)
88 3lt7_A Adhesin YADA; adhesion, 32.9 13 0.00045 28.1 0.8 15 244-258 46-60 (64)
89 1wil_A KIAA1045 protein; ring 32.2 22 0.00074 28.4 2.1 14 10-23 34-47 (89)
90 3o36_A Transcription intermedi 31.8 5.9 0.0002 34.1 -1.4 28 10-37 21-52 (184)
91 1wd2_A Ariadne-1 protein homol 31.4 3.7 0.00013 30.0 -2.4 16 11-26 32-47 (60)
92 3mjh_B Early endosome antigen 29.2 14 0.00049 24.5 0.5 11 28-38 6-16 (34)
93 1wem_A Death associated transc 28.1 13 0.00043 27.7 0.0 28 10-37 35-71 (76)
94 1weu_A Inhibitor of growth fam 27.7 17 0.00059 28.7 0.8 25 11-37 57-86 (91)
95 2cs3_A Protein C14ORF4, MY039 26.9 27 0.00092 27.8 1.7 15 12-26 38-52 (93)
96 3asl_A E3 ubiquitin-protein li 26.4 9.2 0.00032 28.5 -1.0 27 10-36 38-69 (70)
97 1wen_A Inhibitor of growth fam 26.2 18 0.00063 27.0 0.7 25 11-37 37-66 (71)
98 2puy_A PHD finger protein 21A; 25.9 3 0.0001 30.0 -3.7 28 10-37 22-53 (60)
99 2p22_A Suppressor protein STP2 25.4 55 0.0019 28.8 3.7 41 225-265 31-71 (174)
100 2ysm_A Myeloid/lymphoid or mix 24.0 11 0.00037 29.9 -1.1 26 9-34 26-55 (111)
101 2yql_A PHD finger protein 21A; 23.5 3.4 0.00012 29.3 -3.7 26 10-35 26-55 (56)
102 2e6s_A E3 ubiquitin-protein li 22.5 9.5 0.00033 29.1 -1.6 26 10-35 46-76 (77)
103 3v43_A Histone acetyltransfera 22.4 51 0.0017 26.2 2.7 26 9-34 30-62 (112)
104 2k4b_A Transcriptional regulat 22.1 26 0.00087 27.6 0.8 32 235-266 50-81 (99)
105 3vhs_A ATPase wrnip1; zinc fin 21.6 23 0.00078 22.5 0.3 14 28-41 7-20 (29)
106 1p6r_A Penicillinase repressor 20.6 50 0.0017 23.9 2.1 33 234-266 23-55 (82)
107 1xwh_A Autoimmune regulator; P 20.6 5.4 0.00019 29.2 -3.2 27 10-36 25-55 (66)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.16 E-value=1.1e-11 Score=93.62 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=43.4
Q ss_pred CCCCeecCCCCcccHhhHHHHHhC-CCCCCCcccccccCCch-hHHHHHHHHHhh
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQR-SKECPICWQQFVLKEPA-CQELLAAIESER 55 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~-s~sCPmCRq~~s~~d~~-s~eL~~~VE~er 55 (332)
|..|++++|||.||..||.+|++. ...||+||+.+...++. +..|.+.++...
T Consensus 18 ~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 18 MKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred ccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 567899999999999999999987 67999999998766654 556666666554
No 2
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.13 E-value=3.9e-11 Score=94.79 Aligned_cols=58 Identities=19% Similarity=0.439 Sum_probs=47.0
Q ss_pred CCCCeec-CCCCcccHhhHHHHHhCCCCCCCcccccccCCch-hHHHHHHHHHhhhccCC
Q 020032 3 FCLFQVT-SCKHEYHLQCILEWSQRSKECPICWQQFVLKEPA-CQELLAAIESERLSKSR 60 (332)
Q Consensus 3 fcpPVvl-pCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~~-s~eL~~~VE~er~lR~~ 60 (332)
|..|+++ +|||.||..||..|++....||+||+.+...++. +..|.++++..+..+..
T Consensus 32 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 32 FNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH 91 (99)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred hCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence 4567777 9999999999999999889999999998865544 66777777777665543
No 3
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=96.77 Aligned_cols=57 Identities=18% Similarity=0.400 Sum_probs=44.1
Q ss_pred CCCCee-cCCCCcccHhhHHHHHhCC-CCCCCcccccccCCch-hHHHHHHHHHhhhccC
Q 020032 3 FCLFQV-TSCKHEYHLQCILEWSQRS-KECPICWQQFVLKEPA-CQELLAAIESERLSKS 59 (332)
Q Consensus 3 fcpPVv-lpCGH~FC~~CI~eWlk~s-~sCPmCRq~~s~~d~~-s~eL~~~VE~er~lR~ 59 (332)
|..|+. ++|||.||..||.+|++.. ..||+||+.+...++. +..+.++++....++.
T Consensus 32 ~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 32 LRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred ccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 556788 9999999999999999987 6999999999776654 3345555555555543
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.11 E-value=4.1e-11 Score=93.73 Aligned_cols=53 Identities=15% Similarity=-0.041 Sum_probs=45.4
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCCCCCCcccccccCCch-hHHHHHHHHHhh
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPA-CQELLAAIESER 55 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~~-s~eL~~~VE~er 55 (332)
|.+||+++|||.||+.||.+||....+||+|++++...++. +..|.+.++...
T Consensus 24 m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 24 MTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 56889999999999999999999888999999999877665 677777776654
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=90.67 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=42.6
Q ss_pred CCCCeecC-CCCcccHhhHHHHHhCC--CCCCCcccccc-cCCch-hHHHHHHHHHhhhc
Q 020032 3 FCLFQVTS-CKHEYHLQCILEWSQRS--KECPICWQQFV-LKEPA-CQELLAAIESERLS 57 (332)
Q Consensus 3 fcpPVvlp-CGH~FC~~CI~eWlk~s--~sCPmCRq~~s-~~d~~-s~eL~~~VE~er~l 57 (332)
|..|++++ |||.||..||.+||... ..||+||+.+. ...+. +..|.++++..+..
T Consensus 23 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 23 MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp CSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred hcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 56789999 99999999999999754 58999999973 33333 66777777766543
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.09 E-value=6e-11 Score=95.91 Aligned_cols=54 Identities=15% Similarity=-0.052 Sum_probs=46.9
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCCCCCCcccccccCCch-hHHHHHHHHHhhh
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEPA-CQELLAAIESERL 56 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~~-s~eL~~~VE~er~ 56 (332)
|.+||+++|||.||+.||..||....+||+|++++...++. +..|.+.++....
T Consensus 39 m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 39 MTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp CSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred ccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 56889999999999999999999888999999999877665 7778888877654
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.3e-11 Score=91.32 Aligned_cols=36 Identities=33% Similarity=0.497 Sum_probs=33.3
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCCCCCCcccccc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
|..|++++|||.||..||.+|++....||+||+.+.
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 25 FQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred hcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 566889999999999999999998889999999986
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.08 E-value=4.6e-11 Score=100.27 Aligned_cols=39 Identities=36% Similarity=0.757 Sum_probs=34.9
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCCCCCCcccccccCC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d 41 (332)
|..|++++|||.||..||..|++....||+||+++....
T Consensus 63 ~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 63 FIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp CSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 567899999999999999999999999999999986543
No 9
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.08 E-value=8.8e-11 Score=96.40 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=41.5
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCC-CCCCCccccccc-CCch-hHHHHHHHHHh
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRS-KECPICWQQFVL-KEPA-CQELLAAIESE 54 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s-~sCPmCRq~~s~-~d~~-s~eL~~~VE~e 54 (332)
|..|++++|||.||..||..|+... ..||+||+.+.. ..+. +..|.++++..
T Consensus 62 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 62 VFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred HcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 5678999999999999999999865 499999999876 3333 66677776554
No 10
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.05 E-value=1.6e-10 Score=93.08 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=47.4
Q ss_pred CCCCeecCCC-CcccHhhHHHHHhCCCCCCCcccccccCCch-hHHHHHHHHHhhhc
Q 020032 3 FCLFQVTSCK-HEYHLQCILEWSQRSKECPICWQQFVLKEPA-CQELLAAIESERLS 57 (332)
Q Consensus 3 fcpPVvlpCG-H~FC~~CI~eWlk~s~sCPmCRq~~s~~d~~-s~eL~~~VE~er~l 57 (332)
|.+||+++|| |.||+.||.+||....+||+||+++...++. +..|.+.++.....
T Consensus 32 m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 32 MCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred ccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHH
Confidence 5688999999 9999999999999888999999999877665 77788888776543
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=87.51 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=34.6
Q ss_pred CCCCeec-CCCCcccHhhHHHHHhCCCCCCCcccccccCCc
Q 020032 3 FCLFQVT-SCKHEYHLQCILEWSQRSKECPICWQQFVLKEP 42 (332)
Q Consensus 3 fcpPVvl-pCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~ 42 (332)
|..|+++ +|||.||..||.+|++....||+||+.+...++
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 25 LIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred HHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 4557776 999999999999999988899999999876554
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=9.1e-11 Score=85.71 Aligned_cols=34 Identities=24% Similarity=0.602 Sum_probs=31.1
Q ss_pred CeecCCCCcccHhhHHHHHhCCCCCCCccccccc
Q 020032 6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 6 PVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
+++++|||.||..||.+|++....||+||+.+..
T Consensus 35 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 35 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred eEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3889999999999999999998999999998753
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.03 E-value=9.8e-11 Score=86.35 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=33.1
Q ss_pred CeecCCCCcccHhhHHHHHhCCCCCCCcccccccCCc
Q 020032 6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEP 42 (332)
Q Consensus 6 PVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~ 42 (332)
+++++|||.||..||.+|++....||+||+.+...+.
T Consensus 30 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 30 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred eEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 3889999999999999999999999999999875543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.01 E-value=9.7e-11 Score=96.02 Aligned_cols=38 Identities=24% Similarity=0.739 Sum_probs=33.6
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCCCCCCcccccccC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLK 40 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~ 40 (332)
-|+.+.++|||.||..||.+||+.+.+||+||+.|.+.
T Consensus 65 ~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 65 ECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred cceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 35578899999999999999999999999999997643
No 15
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=9.4e-11 Score=90.51 Aligned_cols=35 Identities=29% Similarity=0.872 Sum_probs=30.7
Q ss_pred eecCCCCcccHhhHHHHHhCCCCCCCcccccccCC
Q 020032 7 QVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d 41 (332)
++++|||.||..||.+|++.+.+||+||+++...+
T Consensus 44 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 44 VWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp EEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred EeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 55569999999999999999999999999986543
No 16
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=85.77 Aligned_cols=36 Identities=28% Similarity=0.698 Sum_probs=32.2
Q ss_pred CCeecCCCCcccHhhHHHHHhCCCCCCCcccccccC
Q 020032 5 LFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLK 40 (332)
Q Consensus 5 pPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~ 40 (332)
.++.++|||.||..||.+|++....||+||+.+...
T Consensus 29 ~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 29 DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 457899999999999999999989999999988643
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-10 Score=84.70 Aligned_cols=39 Identities=23% Similarity=0.570 Sum_probs=32.9
Q ss_pred CCCCeecCCCCcccHhhHHHHHh-CCCCCCCcccccccCC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQ-RSKECPICWQQFVLKE 41 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk-~s~sCPmCRq~~s~~d 41 (332)
|..|++++|||.||..||.+|++ ....||+||+.+...+
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 25 LCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp ESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 45678899999999999999995 4578999999987543
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=83.28 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=33.0
Q ss_pred CeecCCCCcccHhhHHHHHhCCCCCCCcccccccCCc
Q 020032 6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEP 42 (332)
Q Consensus 6 PVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~ 42 (332)
++.++|||.||..||.+|++.+..||+||+.+...+.
T Consensus 23 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 23 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp EEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred EEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 3789999999999999999998999999999876543
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.9e-10 Score=85.35 Aligned_cols=39 Identities=21% Similarity=0.479 Sum_probs=33.2
Q ss_pred CCCCeecCCCCcccHhhHHHHHh---CCCCCCCcccccccCC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQ---RSKECPICWQQFVLKE 41 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk---~s~sCPmCRq~~s~~d 41 (332)
|..|++++|||.||..||.+|++ ....||+||+.+...+
T Consensus 30 ~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 30 LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 45678999999999999999997 3468999999987554
No 20
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.98 E-value=3.4e-10 Score=90.82 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=39.8
Q ss_pred CCCCeec-CCCCcccHhhHHHHHhCCCCCCCcccccccCCc----h-hHHHHHHHHH
Q 020032 3 FCLFQVT-SCKHEYHLQCILEWSQRSKECPICWQQFVLKEP----A-CQELLAAIES 53 (332)
Q Consensus 3 fcpPVvl-pCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~----~-s~eL~~~VE~ 53 (332)
|..|+++ +|||.||..||..|++....||+||+.+....+ . +..|.++++.
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~ 81 (108)
T 2ckl_A 25 FIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYK 81 (108)
T ss_dssp CSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHH
T ss_pred HhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHH
Confidence 4567776 999999999999999998999999999876522 1 4555555543
No 21
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.98 E-value=3.5e-10 Score=97.07 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=42.6
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCC-CCCCcccccccC-Cch-hHHHHHHHHHh
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSK-ECPICWQQFVLK-EPA-CQELLAAIESE 54 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~-sCPmCRq~~s~~-d~~-s~eL~~~VE~e 54 (332)
|..|++++|||.||..||..|++... .||+||+.+... .+. +..|.++++..
T Consensus 88 ~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 88 VYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLF 142 (150)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHH
T ss_pred hcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 56789999999999999999999764 899999998876 333 66777777654
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.98 E-value=1.6e-10 Score=81.44 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=31.1
Q ss_pred CCeecCCCCcccHhhHHHHHhCCCCCCCcccccc
Q 020032 5 LFQVTSCKHEYHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 5 pPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
.+++++|||.||..||.+|++....||+||+.+.
T Consensus 21 ~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 21 VAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3688999999999999999999899999999864
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.98 E-value=1.6e-10 Score=87.25 Aligned_cols=35 Identities=26% Similarity=0.841 Sum_probs=31.5
Q ss_pred eecCCCCcccHhhHHHHHhCCCCCCCcccccccCC
Q 020032 7 QVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d 41 (332)
++++|||.||..||.+|++....||+||+.+...+
T Consensus 32 ~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 32 RQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp EECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred EEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 56799999999999999999899999999987544
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=7.3e-11 Score=88.12 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=33.4
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCCCCCCccccccc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
|..++.++|||.||..||.+|++....||+||+.+..
T Consensus 25 ~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 25 CVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999999999999988999999999863
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=2.6e-10 Score=102.77 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=44.8
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCC-CCCCCcccccccCCch-hHHHHHHHHHhh
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRS-KECPICWQQFVLKEPA-CQELLAAIESER 55 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s-~sCPmCRq~~s~~d~~-s~eL~~~VE~er 55 (332)
|.+||+++|||+||..||..||... .+||+||+++...++. +..|.+.++...
T Consensus 218 ~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 218 MREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred hcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 5689999999999999999999874 4599999999876655 777888887664
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.97 E-value=2.4e-10 Score=86.27 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=33.2
Q ss_pred CCCCeecC-CCCcccHhhHHHHHhCC--CCCCCcccccccCC
Q 020032 3 FCLFQVTS-CKHEYHLQCILEWSQRS--KECPICWQQFVLKE 41 (332)
Q Consensus 3 fcpPVvlp-CGH~FC~~CI~eWlk~s--~sCPmCRq~~s~~d 41 (332)
|..|++++ |||.||..||..|++.. ..||+||+.+...+
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 25 MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred HhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 56789999 99999999999999865 68999999865433
No 27
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.96 E-value=2e-10 Score=90.14 Aligned_cols=33 Identities=33% Similarity=0.821 Sum_probs=30.6
Q ss_pred CeecCCCCcccHhhHHHHHhCCCCCCCcccccc
Q 020032 6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 6 PVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
++.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 56 ~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 56 ATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp EEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred EEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 567899999999999999999999999999875
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=2e-10 Score=91.63 Aligned_cols=40 Identities=20% Similarity=0.481 Sum_probs=34.2
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCC---CCCCCcccccccCCc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRS---KECPICWQQFVLKEP 42 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s---~sCPmCRq~~s~~d~ 42 (332)
|..|++++|||.||..||..|+... ..||+||+.+...+.
T Consensus 31 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 31 IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp CSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred hcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 5678899999999999999999875 389999999876554
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.95 E-value=2.6e-10 Score=80.45 Aligned_cols=33 Identities=27% Similarity=0.794 Sum_probs=29.6
Q ss_pred CeecC-CCCcccHhhHHHHHhCCCCCCCcccccc
Q 020032 6 FQVTS-CKHEYHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 6 PVvlp-CGH~FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
++.++ |||.||..||.+|++.+.+||+||+.+.
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred eEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46676 9999999999999999999999999864
No 30
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=2.1e-10 Score=86.32 Aligned_cols=33 Identities=33% Similarity=0.918 Sum_probs=30.5
Q ss_pred eecCCCCcccHhhHHHHHhCCCCCCCccccccc
Q 020032 7 QVTSCKHEYHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
+.++|||.||..||.+|++.+..||+||+.+..
T Consensus 40 ~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 40 RVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp EEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred EEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 678999999999999999999999999998764
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=4.4e-10 Score=84.78 Aligned_cols=39 Identities=18% Similarity=0.462 Sum_probs=33.9
Q ss_pred CCCCeecCCCCcccHhhHHHHHhC------CCCCCCcccccccCC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQR------SKECPICWQQFVLKE 41 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~------s~sCPmCRq~~s~~d 41 (332)
|..|++++|||.||..||..|++. ...||+||+.+...+
T Consensus 29 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 29 LKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred hCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 567889999999999999999987 568999999987544
No 32
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3e-10 Score=84.88 Aligned_cols=33 Identities=30% Similarity=0.941 Sum_probs=29.6
Q ss_pred eecCCCCcccHhhHHHHHhCCCCCCCccccccc
Q 020032 7 QVTSCKHEYHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
++++|||.||..||.+|++....||+||+.+..
T Consensus 32 ~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 32 GICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp EEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred EEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 455999999999999999998899999998753
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.92 E-value=2e-10 Score=86.31 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=33.7
Q ss_pred CCCCeecCCCCcccHhhHHHHHhC-------CCCCCCcccccccCC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQR-------SKECPICWQQFVLKE 41 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~-------s~sCPmCRq~~s~~d 41 (332)
|..|++++|||.||..||.+|++. ...||+||+.+...+
T Consensus 22 ~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 22 LTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 567889999999999999999986 568999999987544
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.7e-10 Score=85.70 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=32.1
Q ss_pred CeecCCCCcccHhhHHHHHhCC---CCCCCcccccccCC
Q 020032 6 FQVTSCKHEYHLQCILEWSQRS---KECPICWQQFVLKE 41 (332)
Q Consensus 6 PVvlpCGH~FC~~CI~eWlk~s---~sCPmCRq~~s~~d 41 (332)
|++++|||.||..||.+|++.. ..||+||+.+...+
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred eEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 8899999999999999999875 68999999886544
No 35
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.91 E-value=5.3e-10 Score=89.98 Aligned_cols=32 Identities=34% Similarity=0.781 Sum_probs=28.4
Q ss_pred ecCCCCcccHhhHHHHH-----hCCCCCCCccccccc
Q 020032 8 VTSCKHEYHLQCILEWS-----QRSKECPICWQQFVL 39 (332)
Q Consensus 8 vlpCGH~FC~~CI~eWl-----k~s~sCPmCRq~~s~ 39 (332)
+++|||.||..||.+|+ +...+||+||+.|..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 78999999999999999 446799999998764
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=7.7e-10 Score=94.92 Aligned_cols=52 Identities=27% Similarity=0.464 Sum_probs=39.7
Q ss_pred CCCCeec-CCCCcccHhhHHHHHhC-CCCCCCcccccccCCch--hHHHHHHHHHh
Q 020032 3 FCLFQVT-SCKHEYHLQCILEWSQR-SKECPICWQQFVLKEPA--CQELLAAIESE 54 (332)
Q Consensus 3 fcpPVvl-pCGH~FC~~CI~eWlk~-s~sCPmCRq~~s~~d~~--s~eL~~~VE~e 54 (332)
|..|+++ +|||.||..||..|++. ...||+||+.+...+.. +..|.++++..
T Consensus 64 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 64 LKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKI 119 (165)
T ss_dssp CSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred hhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence 4456766 99999999999999997 67899999998644322 55666666554
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.8e-10 Score=84.11 Aligned_cols=39 Identities=15% Similarity=0.505 Sum_probs=33.8
Q ss_pred CCCCeecCCCCcccHhhHHHHHhC------CCCCCCcccccccCC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQR------SKECPICWQQFVLKE 41 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~------s~sCPmCRq~~s~~d 41 (332)
|..|++++|||.||..||..|++. ...||+||+.+...+
T Consensus 29 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 29 LTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 556788999999999999999987 679999999987544
No 38
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.90 E-value=3.5e-10 Score=83.07 Aligned_cols=33 Identities=24% Similarity=0.704 Sum_probs=30.6
Q ss_pred CeecCCCCcccHhhHHHHHhCCCCCCCcccccc
Q 020032 6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 6 PVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
.+.++|||.||..||.+|++....||+||+.+.
T Consensus 19 ~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 19 SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 378999999999999999998899999999875
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=4.5e-10 Score=91.65 Aligned_cols=54 Identities=15% Similarity=0.357 Sum_probs=43.2
Q ss_pred CCCCeec-CCCCcccHhhHHHHHhCCCCCCCcccccccCCch-hHHHHHHHHHhhhcc
Q 020032 3 FCLFQVT-SCKHEYHLQCILEWSQRSKECPICWQQFVLKEPA-CQELLAAIESERLSK 58 (332)
Q Consensus 3 fcpPVvl-pCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~~-s~eL~~~VE~er~lR 58 (332)
|..|+++ +|||.||..||..|+. ..||+||+.+...++. +..|.++++..+.++
T Consensus 32 ~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 32 LREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp CSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 5678888 9999999999999998 7899999998766554 666776666655444
No 40
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-09 Score=86.47 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=45.1
Q ss_pred CCCCeecC-CCCcccHhhHHHHHhCC------CCCCC--cccc-cccCCch-hHHHHHHHHHhhhcc
Q 020032 3 FCLFQVTS-CKHEYHLQCILEWSQRS------KECPI--CWQQ-FVLKEPA-CQELLAAIESERLSK 58 (332)
Q Consensus 3 fcpPVvlp-CGH~FC~~CI~eWlk~s------~sCPm--CRq~-~s~~d~~-s~eL~~~VE~er~lR 58 (332)
|.+||+++ |||+||+.||.+||... ..||+ |++. +...++. +..|...++..+...
T Consensus 17 ~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 17 MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 67899995 99999999999999863 48999 9987 7666655 778888888775433
No 41
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.87 E-value=2.3e-10 Score=95.78 Aligned_cols=37 Identities=24% Similarity=0.793 Sum_probs=0.0
Q ss_pred CCCeecCCCCcccHhhHHHHHhCCCCCCCcccccccC
Q 020032 4 CLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLK 40 (332)
Q Consensus 4 cpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~ 40 (332)
|+.+.++|+|.||..||.+||+.+.+||+||++|...
T Consensus 77 ~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 77 CTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp -------------------------------------
T ss_pred cccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4556689999999999999999999999999997643
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3e-10 Score=84.01 Aligned_cols=35 Identities=34% Similarity=0.871 Sum_probs=31.8
Q ss_pred eecCCCCcccHhhHHHHHhCCCCCCCcccccccCC
Q 020032 7 QVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKE 41 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d 41 (332)
++++|||.||..||.+|++....||+||+.+...+
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 78999999999999999998899999999886444
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.85 E-value=7.4e-10 Score=89.61 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.8
Q ss_pred CCCCeecCCCCcccHhhHHHHHhC-CCCCCCccccccc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQR-SKECPICWQQFVL 39 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~-s~sCPmCRq~~s~ 39 (332)
|..|++++|||.||..||..|++. ...||+||+.+..
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 25 LVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 567899999999999999999987 5689999999864
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=2.2e-09 Score=86.89 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=35.1
Q ss_pred CCCCeecCCCCcccHhhHHHHHhC-CCCCCCcccccccCCc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQR-SKECPICWQQFVLKEP 42 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~-s~sCPmCRq~~s~~d~ 42 (332)
|..|++++|||.||..||.+|++. ...||+||+.+...+.
T Consensus 33 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 33 LADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred hcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 567899999999999999999987 6799999999876554
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.82 E-value=1.7e-09 Score=88.37 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=39.6
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCC-CCCCcccccccCCch-hHHHHHHHHH
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSK-ECPICWQQFVLKEPA-CQELLAAIES 53 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~-sCPmCRq~~s~~d~~-s~eL~~~VE~ 53 (332)
|..|++++|||.||..||.+|++... .||+||+.+...+.. +..+...++.
T Consensus 28 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 28 LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (118)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred hcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcc
Confidence 45679999999999999999998765 999999998765543 3444455443
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.5e-09 Score=77.66 Aligned_cols=31 Identities=26% Similarity=0.671 Sum_probs=27.5
Q ss_pred CCCCeecCCCCcccHhhHHHHHh---CCCCCCCc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQ---RSKECPIC 33 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk---~s~sCPmC 33 (332)
|..|++++|||.||..||.+|++ ....||+|
T Consensus 30 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 30 LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 56789999999999999999998 34689998
No 47
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=3.1e-09 Score=77.80 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=30.5
Q ss_pred eecCCCCcccHhhHHHHHhCC-CCCCCcccccccCCc
Q 020032 7 QVTSCKHEYHLQCILEWSQRS-KECPICWQQFVLKEP 42 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~s-~sCPmCRq~~s~~d~ 42 (332)
++++|||.||..||.+|+... ..||+||+.+...+.
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp EECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred ecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 578999999999999997654 689999999875543
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=2.3e-09 Score=86.68 Aligned_cols=37 Identities=24% Similarity=0.558 Sum_probs=33.3
Q ss_pred CeecCCCCcccHhhHHHHHhCCCCCCCcccccccCCc
Q 020032 6 FQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEP 42 (332)
Q Consensus 6 PVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~ 42 (332)
+++++|||.||..||.+|++....||+||+.+...+.
T Consensus 27 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 27 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp EEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred eEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3899999999999999999999999999999875553
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=2.3e-09 Score=86.72 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=33.7
Q ss_pred CCeecCCCCcccHhhHHHHHhCCCCCCCcccccccCCc
Q 020032 5 LFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLKEP 42 (332)
Q Consensus 5 pPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~ 42 (332)
.++.++|||.||..||.+|++..++||+||+.+...+.
T Consensus 91 ~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 91 LIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp CEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred ceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 34889999999999999999999999999999876543
No 50
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.75 E-value=5.2e-09 Score=93.37 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=45.3
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCC-CCCCCcccccccCCch-hHHHHHHHHHhhh
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRS-KECPICWQQFVLKEPA-CQELLAAIESERL 56 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s-~sCPmCRq~~s~~d~~-s~eL~~~VE~er~ 56 (332)
|.+||+++|||+||..||..||... .+||+|++++...++. +..|.+.++....
T Consensus 116 m~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 116 MREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 5688999999999999999999864 4799999999877665 7778888876643
No 51
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=5.2e-09 Score=74.14 Aligned_cols=31 Identities=29% Similarity=0.805 Sum_probs=26.8
Q ss_pred CCCCeecCCCCcccHhhHHHHHh---CCCCCCCc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQ---RSKECPIC 33 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk---~s~sCPmC 33 (332)
|..|++++|||.||..||.+|++ ....||+|
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 25 LKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 55678999999999999999965 45789998
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.63 E-value=5.9e-09 Score=88.73 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=32.4
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCC-CCCCccccccc
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSK-ECPICWQQFVL 39 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~-sCPmCRq~~s~ 39 (332)
|..|+.++|||.||..||.+|++... .||+||+++..
T Consensus 41 ~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 41 LRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred hcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 56789999999999999999998764 89999997643
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=9.7e-09 Score=73.99 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=30.0
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCCCCCCCcccccccC
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRSKECPICWQQFVLK 40 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~ 40 (332)
|..|++++|||.||..||..| ...||+||+.+...
T Consensus 16 ~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 16 AKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 667899999999999999885 56899999987643
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.53 E-value=3.4e-08 Score=84.83 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=38.7
Q ss_pred CCCCeecCCCCcccHhhHHHHHhCC-CCCCCcccccccCCch-hHHHHHHHH
Q 020032 3 FCLFQVTSCKHEYHLQCILEWSQRS-KECPICWQQFVLKEPA-CQELLAAIE 52 (332)
Q Consensus 3 fcpPVvlpCGH~FC~~CI~eWlk~s-~sCPmCRq~~s~~d~~-s~eL~~~VE 52 (332)
|.+|+.++|||.||..||.+|++.. ..||+||+.+...+.. +..+...+.
T Consensus 28 ~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~ 79 (170)
T 3hcs_A 28 LREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79 (170)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred hcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHh
Confidence 5678999999999999999999865 4999999998765433 334444444
No 55
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=5e-08 Score=75.69 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=28.7
Q ss_pred CCCCcccHhhHHHHHhCC--CCCCCcccccccCC
Q 020032 10 SCKHEYHLQCILEWSQRS--KECPICWQQFVLKE 41 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s--~sCPmCRq~~s~~d 41 (332)
.|+|.||..||.+||+.. .+||+||+.|....
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 899999999999999987 79999999987543
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.49 E-value=4.3e-08 Score=92.54 Aligned_cols=53 Identities=15% Similarity=0.314 Sum_probs=42.6
Q ss_pred CCCCCeec-CCCCcccHhhHHHHHhCC--CCCCC--cccccccCCch-hHHHHHHHHHh
Q 020032 2 QFCLFQVT-SCKHEYHLQCILEWSQRS--KECPI--CWQQFVLKEPA-CQELLAAIESE 54 (332)
Q Consensus 2 ~fcpPVvl-pCGH~FC~~CI~eWlk~s--~sCPm--CRq~~s~~d~~-s~eL~~~VE~e 54 (332)
-|..||+. .|||+||+.||..||+.. ..||+ |++.+...++. +..|...++..
T Consensus 190 ~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 190 PYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp BCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred cccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 36788984 999999999999999864 47999 99998877766 66666665544
No 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.48 E-value=7.6e-08 Score=74.58 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=27.0
Q ss_pred CCCCcccHhhHHHHHhC-CCCCCCcccccccCC
Q 020032 10 SCKHEYHLQCILEWSQR-SKECPICWQQFVLKE 41 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~-s~sCPmCRq~~s~~d 41 (332)
+|||.||..||..||+. ...||+||+.+....
T Consensus 32 ~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 39999999999998864 468999999987544
No 58
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=5.3e-08 Score=76.01 Aligned_cols=36 Identities=28% Similarity=0.756 Sum_probs=30.7
Q ss_pred CCeecCCC-----CcccHhhHHHHHhCC--CCCCCcccccccC
Q 020032 5 LFQVTSCK-----HEYHLQCILEWSQRS--KECPICWQQFVLK 40 (332)
Q Consensus 5 pPVvlpCG-----H~FC~~CI~eWlk~s--~sCPmCRq~~s~~ 40 (332)
.+++++|+ |.||..||.+|++.+ .+||+||+.+...
T Consensus 29 ~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 29 SPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp SCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 35789996 999999999999875 4899999998643
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.45 E-value=4.4e-08 Score=74.24 Aligned_cols=33 Identities=21% Similarity=0.519 Sum_probs=29.2
Q ss_pred CCCCeecCCCCc-ccHhhHHHHHhCCCCCCCccccccc
Q 020032 3 FCLFQVTSCKHE-YHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 3 fcpPVvlpCGH~-FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
+..++.++|||. ||..||..| ..||+||+.+..
T Consensus 34 ~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 34 NIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp BCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456789999999 999999999 789999998763
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.42 E-value=6.8e-08 Score=71.61 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCeec--CCCCc-ccHhhHHHHHhCCCCCCCcccccc
Q 020032 4 CLFQVT--SCKHE-YHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 4 cpPVvl--pCGH~-FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
..++.+ +|||. ||..|+..|++....||+||+++.
T Consensus 19 ~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 19 KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345655 99999 899999999998889999999875
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.39 E-value=8.9e-08 Score=70.77 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=29.9
Q ss_pred CCeec--CCCCc-ccHhhHHHHHhCCCCCCCcccccc
Q 020032 5 LFQVT--SCKHE-YHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 5 pPVvl--pCGH~-FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
.++++ +|||. ||..|+..|++....||+||+++.
T Consensus 19 ~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 19 DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 34555 99998 999999999988889999999875
No 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.31 E-value=1.5e-07 Score=69.82 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=35.1
Q ss_pred CCCCeec-CCCCcccHhhHHHHHhCCCCCCCcccccccCCc
Q 020032 3 FCLFQVT-SCKHEYHLQCILEWSQRSKECPICWQQFVLKEP 42 (332)
Q Consensus 3 fcpPVvl-pCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~d~ 42 (332)
|.+||++ +|||.|++.||.+|++.+.+||++++++...++
T Consensus 13 m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 13 PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred CCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 3478998 999999999999999988889999999876654
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=4.5e-07 Score=68.55 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=27.9
Q ss_pred CCCCeecCCCCc-ccHhhHHHHHhCCCCCCCccccccc
Q 020032 3 FCLFQVTSCKHE-YHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 3 fcpPVvlpCGH~-FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
+..++.++|||. ||..|+.. ...||+||+.+..
T Consensus 35 ~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 35 NIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp CCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 567789999999 99999964 3789999998764
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.08 E-value=6.3e-07 Score=69.15 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=28.2
Q ss_pred CCCCeecCCCCc-ccHhhHHHHHhCCCCCCCccccccc
Q 020032 3 FCLFQVTSCKHE-YHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 3 fcpPVvlpCGH~-FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
+..++.++|||. ||..|+..| ..||+||+.+..
T Consensus 28 ~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 28 EINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp BCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred cCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 446788999999 999999987 399999998763
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.06 E-value=2.1e-06 Score=70.56 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=29.2
Q ss_pred eecCCCCcccHhhHHHHHhC-CCCCCCccccccc
Q 020032 7 QVTSCKHEYHLQCILEWSQR-SKECPICWQQFVL 39 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~-s~sCPmCRq~~s~ 39 (332)
.++||+|+||..|+..|.+. .+.||+|+.++..
T Consensus 16 RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 16 RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred eeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 57899999999999999865 5899999999863
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=3.5e-06 Score=63.32 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=27.7
Q ss_pred CCCCeecCCCCc-ccHhhHHHHHhCCCCCCCccccccc
Q 020032 3 FCLFQVTSCKHE-YHLQCILEWSQRSKECPICWQQFVL 39 (332)
Q Consensus 3 fcpPVvlpCGH~-FC~~CI~eWlk~s~sCPmCRq~~s~ 39 (332)
+..++.++|||. ||..|+.. ...||+||+.+..
T Consensus 25 ~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 25 TVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 446788999999 99999984 4789999998763
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.78 E-value=4e-06 Score=65.61 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=25.2
Q ss_pred cCCCCcccHhhHHHHHhC--------CCCCCC--cccc--ccc
Q 020032 9 TSCKHEYHLQCILEWSQR--------SKECPI--CWQQ--FVL 39 (332)
Q Consensus 9 lpCGH~FC~~CI~eWlk~--------s~sCPm--CRq~--~s~ 39 (332)
++|||.||..||..||+. ...||. |++. +..
T Consensus 24 ~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp TTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 379999999999998763 137999 9998 543
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.71 E-value=1.9e-05 Score=58.36 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=27.9
Q ss_pred CeecCCC--C---cccHhhHHHHHhC--CCCCCCccccccc
Q 020032 6 FQVTSCK--H---EYHLQCILEWSQR--SKECPICWQQFVL 39 (332)
Q Consensus 6 PVvlpCG--H---~FC~~CI~eWlk~--s~sCPmCRq~~s~ 39 (332)
++++||. | .||..||.+|+.. +.+||+|++.|..
T Consensus 19 ~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 19 ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4568865 4 9999999999875 5789999998864
No 69
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.93 E-value=0.048 Score=44.49 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=29.4
Q ss_pred eecCCCCcccHhhHHHHHhCCCCCCCcccccccC
Q 020032 7 QVTSCKHEYHLQCILEWSQRSKECPICWQQFVLK 40 (332)
Q Consensus 7 VvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s~~ 40 (332)
++....|.+|+.|+.--|..+..||+|++++..+
T Consensus 41 LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 41 LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 4556679999999999999999999999998643
No 70
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.93 E-value=0.18 Score=54.87 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=44.8
Q ss_pred CCCCeecCCC-CcccHhhHHHHHhCCCCCCCcccccccCCch-hHHHHHHHHHhhh
Q 020032 3 FCLFQVTSCK-HEYHLQCILEWSQRSKECPICWQQFVLKEPA-CQELLAAIESERL 56 (332)
Q Consensus 3 fcpPVvlpCG-H~FC~~CI~eWlk~s~sCPmCRq~~s~~d~~-s~eL~~~VE~er~ 56 (332)
+.+||+++.| +.|-+.+|.+|+....+||+=|+++...++. +.+|...++....
T Consensus 901 M~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 901 MKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred HhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 4578999998 5899999999999888999999999876655 7778777766543
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=86.57 E-value=0.24 Score=38.49 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.0
Q ss_pred CCCCee--cCCCCcccHhhHHHHHh
Q 020032 3 FCLFQV--TSCKHEYHLQCILEWSQ 25 (332)
Q Consensus 3 fcpPVv--lpCGH~FC~~CI~eWlk 25 (332)
+.+++. +.|+|.||..||..|+.
T Consensus 14 ~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 14 AQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCceEECCcCChHHhHHHCHHHhc
Confidence 456777 99999999999998433
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=67.57 E-value=1.7 Score=32.48 Aligned_cols=28 Identities=18% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCccccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQQF 37 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq~~ 37 (332)
.|...||..|+...+... -.||.|....
T Consensus 29 ~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 29 HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 599999999999887753 2799998754
No 73
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=63.34 E-value=2.6 Score=34.60 Aligned_cols=13 Identities=15% Similarity=0.738 Sum_probs=11.3
Q ss_pred cccHhhHHHHHhC
Q 020032 14 EYHLQCILEWSQR 26 (332)
Q Consensus 14 ~FC~~CI~eWlk~ 26 (332)
-||+.|+..|.+.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999864
No 74
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=62.81 E-value=2.7 Score=34.45 Aligned_cols=13 Identities=15% Similarity=0.790 Sum_probs=11.3
Q ss_pred cccHhhHHHHHhC
Q 020032 14 EYHLQCILEWSQR 26 (332)
Q Consensus 14 ~FC~~CI~eWlk~ 26 (332)
-||+.|+..|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999864
No 75
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=59.32 E-value=0.91 Score=34.79 Aligned_cols=16 Identities=13% Similarity=0.546 Sum_probs=13.9
Q ss_pred CCCCcccHhhHHHHHh
Q 020032 10 SCKHEYHLQCILEWSQ 25 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk 25 (332)
.|||.||+.|-..|=.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999998844
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.72 E-value=9.1 Score=37.59 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=25.2
Q ss_pred eecCCCCcccHhh--HHHHHhCC--CCCCCcccccccCCch
Q 020032 7 QVTSCKHEYHLQC--ILEWSQRS--KECPICWQQFVLKEPA 43 (332)
Q Consensus 7 VvlpCGH~FC~~C--I~eWlk~s--~sCPmCRq~~s~~d~~ 43 (332)
.-..|.|.-|++- +++..++. -.||+|.+.+...++.
T Consensus 264 Rg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 264 KSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred cCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 3467999866643 34433332 4799999999888776
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.27 E-value=12 Score=36.61 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=24.8
Q ss_pred eecCCCCcccHh--hHHHHHhCC--CCCCCcccccccCCch
Q 020032 7 QVTSCKHEYHLQ--CILEWSQRS--KECPICWQQFVLKEPA 43 (332)
Q Consensus 7 VvlpCGH~FC~~--CI~eWlk~s--~sCPmCRq~~s~~d~~ 43 (332)
.-..|.|.-|++ =+++..+.. -.||+|.+.+...++.
T Consensus 230 Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 230 RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 346799985554 334433332 4799999999887776
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=44.80 E-value=4 Score=29.59 Aligned_cols=27 Identities=26% Similarity=0.751 Sum_probs=20.7
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCcccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQQ 36 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq~ 36 (332)
.|.-.||..|+..-+... -.||.|.+.
T Consensus 28 ~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 28 TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 688899999998755432 379999863
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.22 E-value=17 Score=29.30 Aligned_cols=29 Identities=21% Similarity=0.559 Sum_probs=24.4
Q ss_pred CCCCcccHhhHH-HHHhCCCCCCCcccccc
Q 020032 10 SCKHEYHLQCIL-EWSQRSKECPICWQQFV 38 (332)
Q Consensus 10 pCGH~FC~~CI~-eWlk~s~sCPmCRq~~s 38 (332)
.|+--.|+.|.. ++-+.+..||.|+..+.
T Consensus 40 eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 40 ECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccCChhhHHHHHHHHhccCccccccCCccc
Confidence 688889999997 56667889999999864
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.82 E-value=5.5 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.696 Sum_probs=19.4
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQ 35 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq 35 (332)
.|...||..|+..=+... -.||.|+.
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 688999999997544332 26999975
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=42.60 E-value=11 Score=27.82 Aligned_cols=25 Identities=20% Similarity=0.623 Sum_probs=14.9
Q ss_pred cCCCCcccHhhHHHHHhCCCCCCCc
Q 020032 9 TSCKHEYHLQCILEWSQRSKECPIC 33 (332)
Q Consensus 9 lpCGH~FC~~CI~eWlk~s~sCPmC 33 (332)
..|++.||.+|=.==-+.--.||-|
T Consensus 34 ~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 34 AVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp TTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CccCcCcccchhHHHHhhccCCcCC
Confidence 4677888888843222223467776
No 82
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.98 E-value=2.6 Score=32.42 Aligned_cols=17 Identities=18% Similarity=0.921 Sum_probs=12.9
Q ss_pred CCCCcccHhhHHHHHhC
Q 020032 10 SCKHEYHLQCILEWSQR 26 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~ 26 (332)
.|||.||+.|-..|=+.
T Consensus 48 ~C~~~FC~~C~~~w~~~ 64 (86)
T 2ct7_A 48 QCHQTFCVRCKRQWEEQ 64 (86)
T ss_dssp TTCCEECSSSCSBCCTT
T ss_pred CCCCccccccCCchhhc
Confidence 48999998888777333
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.81 E-value=4 Score=30.36 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=21.6
Q ss_pred CCCCcccHhhHHHHHhC----CCCCCCcccccc
Q 020032 10 SCKHEYHLQCILEWSQR----SKECPICWQQFV 38 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~----s~sCPmCRq~~s 38 (332)
.|.-.||..|+..-... .-.||.|+..+.
T Consensus 38 ~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 38 DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 58889999999754432 347999998754
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.94 E-value=5.9 Score=28.70 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=21.1
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCccccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQQF 37 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq~~ 37 (332)
.|...||..|+..-+... -.||.|....
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 488999999998655432 2699998753
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=36.01 E-value=4.6 Score=35.56 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCcccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQQ 36 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq~ 36 (332)
.|...||..|+.+.+... -.||.|+..
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 488999999998766542 369999975
No 86
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.45 E-value=10 Score=31.18 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=19.0
Q ss_pred CCeecCCCCcccHhhHHHHHhCCCCCCCcccccc
Q 020032 5 LFQVTSCKHEYHLQCILEWSQRSKECPICWQQFV 38 (332)
Q Consensus 5 pPVvlpCGH~FC~~CI~eWlk~s~sCPmCRq~~s 38 (332)
|+.=..||+.|+ .=+.....||.|+....
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 445578999991 11223357999998754
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.71 E-value=41 Score=28.64 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=20.4
Q ss_pred CCCCcccHhhHHHHHh---------C--CCCCCCcccc
Q 020032 10 SCKHEYHLQCILEWSQ---------R--SKECPICWQQ 36 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk---------~--s~sCPmCRq~ 36 (332)
.|--.||..||..=+. . .-.||+|+..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 6889999999996542 1 2379999854
No 88
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=32.88 E-value=13 Score=28.09 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=7.9
Q ss_pred HHHhhhhhHHHHHHH
Q 020032 244 VQREMSAGIAGVAKM 258 (332)
Q Consensus 244 v~re~~agia~v~rm 258 (332)
++...|||||||.-|
T Consensus 46 ~~kr~~aGiA~a~A~ 60 (64)
T 3lt7_A 46 LEKRLLKLLASSAAL 60 (64)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHhhhHHHHHHH
Confidence 677899999999765
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=32.22 E-value=22 Score=28.44 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=12.4
Q ss_pred CCCCcccHhhHHHH
Q 020032 10 SCKHEYHLQCILEW 23 (332)
Q Consensus 10 pCGH~FC~~CI~eW 23 (332)
-|+-+||..|+.+-
T Consensus 34 vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 34 VCTRVFHDGCLRRM 47 (89)
T ss_dssp SSSSCCCHHHHHHH
T ss_pred cccccccHhhcccc
Confidence 48999999999985
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=31.77 E-value=5.9 Score=34.10 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=21.7
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCccccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQQF 37 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq~~ 37 (332)
.|.-.||..|+.+.+... -.||.|+..-
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 488999999997766542 3699999753
No 91
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.38 E-value=3.7 Score=30.05 Aligned_cols=16 Identities=31% Similarity=0.902 Sum_probs=13.1
Q ss_pred CCCcccHhhHHHHHhC
Q 020032 11 CKHEYHLQCILEWSQR 26 (332)
Q Consensus 11 CGH~FC~~CI~eWlk~ 26 (332)
|+|.||..|..+|-..
T Consensus 32 C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 32 CKAEFCWVCLGPWEPH 47 (60)
T ss_dssp GGSCCSSSSCSCSGGG
T ss_pred cCCEEeeCcCCCcccC
Confidence 8899999998888654
No 92
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.25 E-value=14 Score=24.45 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=9.1
Q ss_pred CCCCCcccccc
Q 020032 28 KECPICWQQFV 38 (332)
Q Consensus 28 ~sCPmCRq~~s 38 (332)
..||+|++.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 46999999875
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.06 E-value=13 Score=27.74 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=20.2
Q ss_pred CCCCcccHhhHHH---H------HhCCCCCCCccccc
Q 020032 10 SCKHEYHLQCILE---W------SQRSKECPICWQQF 37 (332)
Q Consensus 10 pCGH~FC~~CI~e---W------lk~s~sCPmCRq~~ 37 (332)
.|..-||..|+.- - ......||.|+...
T Consensus 35 ~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 35 RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 5889999999952 1 12456899998753
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.71 E-value=17 Score=28.73 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=18.3
Q ss_pred CC-CcccHhhHHHHHhC----CCCCCCccccc
Q 020032 11 CK-HEYHLQCILEWSQR----SKECPICWQQF 37 (332)
Q Consensus 11 CG-H~FC~~CI~eWlk~----s~sCPmCRq~~ 37 (332)
|. ..||..||. |.. .-.||.|+...
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 65 689999997 333 24799998753
No 95
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=26.89 E-value=27 Score=27.84 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.4
Q ss_pred CCcccHhhHHHHHhC
Q 020032 12 KHEYHLQCILEWSQR 26 (332)
Q Consensus 12 GH~FC~~CI~eWlk~ 26 (332)
+|-||+.|-...++.
T Consensus 38 ~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 38 SHKFCFPCSRESIKA 52 (93)
T ss_dssp SCEECHHHHHHHHHH
T ss_pred CCeeeccccHHHHHh
Confidence 699999999998874
No 96
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.35 E-value=9.2 Score=28.53 Aligned_cols=27 Identities=22% Similarity=0.589 Sum_probs=19.9
Q ss_pred CCCCcccHhhHHHHHhC-----CCCCCCcccc
Q 020032 10 SCKHEYHLQCILEWSQR-----SKECPICWQQ 36 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~-----s~sCPmCRq~ 36 (332)
.|...||..|+.+=|.. .=.||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 58899999999854443 2269999864
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=26.16 E-value=18 Score=27.02 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=18.5
Q ss_pred CC-CcccHhhHHHHHhC----CCCCCCccccc
Q 020032 11 CK-HEYHLQCILEWSQR----SKECPICWQQF 37 (332)
Q Consensus 11 CG-H~FC~~CI~eWlk~----s~sCPmCRq~~ 37 (332)
|. ..||..||. |.. .-.||.|+..-
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 66 689999997 443 23799998753
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.91 E-value=3 Score=29.98 Aligned_cols=28 Identities=32% Similarity=0.681 Sum_probs=20.8
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCccccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQQF 37 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq~~ 37 (332)
.|.-.||..|+.+-+... -.||.|....
T Consensus 22 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 22 TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 688999999998654432 2699997653
No 99
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.39 E-value=55 Score=28.84 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=28.7
Q ss_pred hhhhhhhccccchhhhcHHHHHhhhhhHHHHHHHHHhhccC
Q 020032 225 SLKERLLSRNTSVKELSKEVQREMSAGIAGVAKMIERLDLA 265 (332)
Q Consensus 225 g~ker~~sr~~s~~~l~~~v~re~~agia~v~rm~e~l~~~ 265 (332)
-.+|+||++-..+.+-=+..+.|++.|..-.-+|++.||..
T Consensus 31 ~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~ 71 (174)
T 2p22_A 31 YVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQT 71 (174)
T ss_dssp HHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35889999998885544445667777777777777766643
No 100
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=24.04 E-value=11 Score=29.89 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=19.0
Q ss_pred cCCCCcccHhhHHHHHhC----CCCCCCcc
Q 020032 9 TSCKHEYHLQCILEWSQR----SKECPICW 34 (332)
Q Consensus 9 lpCGH~FC~~CI~eWlk~----s~sCPmCR 34 (332)
..|+..||..||..++.. .-.||.|+
T Consensus 26 ~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 26 TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 479999999999876542 23577665
No 101
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.52 E-value=3.4 Score=29.29 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=19.1
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQ 35 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq 35 (332)
.|...||..|+.+-+... -.||.|..
T Consensus 26 ~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 26 TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 688999999998655432 25888864
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.54 E-value=9.5 Score=29.11 Aligned_cols=26 Identities=27% Similarity=0.640 Sum_probs=19.2
Q ss_pred CCCCcccHhhHHHHHhC-----CCCCCCccc
Q 020032 10 SCKHEYHLQCILEWSQR-----SKECPICWQ 35 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~-----s~sCPmCRq 35 (332)
.|...||..|+.+=|.. .=.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68899999999854443 126999975
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.42 E-value=51 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=17.5
Q ss_pred cCCCCcccHhhHHH------HHhC-CCCCCCcc
Q 020032 9 TSCKHEYHLQCILE------WSQR-SKECPICW 34 (332)
Q Consensus 9 lpCGH~FC~~CI~e------Wlk~-s~sCPmCR 34 (332)
..|+..||..||.. -+.. .-.||.|+
T Consensus 30 ~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 30 ADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46999999999952 2222 23677775
No 104
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=22.09 E-value=26 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=23.9
Q ss_pred cchhhhcHHHHHhhhhhHHHHHHHHHhhccCC
Q 020032 235 TSVKELSKEVQREMSAGIAGVAKMIERLDLAS 266 (332)
Q Consensus 235 ~s~~~l~~~v~re~~agia~v~rm~e~l~~~~ 266 (332)
-+++||...+..+-.-.-++|+|++.||+-..
T Consensus 50 ~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KG 81 (99)
T 2k4b_A 50 ARVDEIYAQIPQELEWSLATVKTLLGRLVKKE 81 (99)
T ss_dssp EEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcccCCCHhhHHHHHHHHHHCC
Confidence 57888887765553445789999999998653
No 105
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.62 E-value=23 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.745 Sum_probs=10.0
Q ss_pred CCCCCcccccccCC
Q 020032 28 KECPICWQQFVLKE 41 (332)
Q Consensus 28 ~sCPmCRq~~s~~d 41 (332)
.+||+|.+-+...+
T Consensus 7 vqcpvcqq~mpaah 20 (29)
T 3vhs_A 7 VQCPVCQQMMPAAH 20 (29)
T ss_dssp EECTTTCCEEEGGG
T ss_pred eeChHHHHhCcHHH
Confidence 36999999765433
No 106
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=20.62 E-value=50 Score=23.90 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=23.8
Q ss_pred ccchhhhcHHHHHhhhhhHHHHHHHHHhhccCC
Q 020032 234 NTSVKELSKEVQREMSAGIAGVAKMIERLDLAS 266 (332)
Q Consensus 234 ~~s~~~l~~~v~re~~agia~v~rm~e~l~~~~ 266 (332)
.-+++||......+-+-.-++|+|++.+|+-..
T Consensus 23 ~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kG 55 (82)
T 1p6r_A 23 SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG 55 (82)
T ss_dssp SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCC
Confidence 458888888765442335689999999998653
No 107
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.62 E-value=5.4 Score=29.22 Aligned_cols=27 Identities=26% Similarity=0.640 Sum_probs=20.3
Q ss_pred CCCCcccHhhHHHHHhCC----CCCCCcccc
Q 020032 10 SCKHEYHLQCILEWSQRS----KECPICWQQ 36 (332)
Q Consensus 10 pCGH~FC~~CI~eWlk~s----~sCPmCRq~ 36 (332)
.|.-.||..|+..-+... -.||.|...
T Consensus 25 ~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 25 GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 688999999998654432 269999864
Done!