Query 020034
Match_columns 332
No_of_seqs 124 out of 1098
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 7.5E-36 1.6E-40 284.8 28.7 300 9-308 10-330 (358)
2 PRK11453 O-acetylserine/cystei 100.0 5.8E-29 1.3E-33 232.8 24.9 251 14-298 6-269 (299)
3 PRK11272 putative DMT superfam 100.0 2.5E-28 5.4E-33 227.8 26.9 251 13-298 9-267 (292)
4 PRK11689 aromatic amino acid e 100.0 1.2E-28 2.6E-33 230.3 24.7 258 10-298 2-269 (295)
5 PRK15430 putative chlorampheni 100.0 9.4E-28 2E-32 224.4 23.4 253 9-298 5-267 (296)
6 TIGR00950 2A78 Carboxylate/Ami 100.0 7.7E-27 1.7E-31 213.4 25.1 238 24-298 1-246 (260)
7 PRK10532 threonine and homoser 100.0 2.2E-26 4.7E-31 214.9 27.1 250 8-298 8-263 (293)
8 TIGR00688 rarD rarD protein. T 99.9 1.3E-25 2.8E-30 205.5 23.4 240 12-291 2-255 (256)
9 TIGR00817 tpt Tpt phosphate/ph 99.9 3.4E-23 7.4E-28 194.0 24.0 252 17-298 7-275 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.9 2.1E-22 4.5E-27 186.9 21.0 253 14-298 3-265 (281)
11 PTZ00343 triose or hexose phos 99.9 1.6E-21 3.5E-26 186.3 25.8 260 10-298 47-330 (350)
12 COG0697 RhaT Permeases of the 99.9 7.2E-19 1.6E-23 162.0 27.5 256 9-298 4-269 (292)
13 PF06027 DUF914: Eukaryotic pr 99.8 1.4E-16 3E-21 150.0 26.0 269 11-298 9-287 (334)
14 COG2962 RarD Predicted permeas 99.8 3.3E-16 7.2E-21 141.5 22.6 254 9-298 4-265 (293)
15 TIGR00776 RhaT RhaT L-rhamnose 99.7 4.9E-16 1.1E-20 144.9 23.2 255 13-298 2-266 (290)
16 COG5006 rhtA Threonine/homoser 99.7 1.2E-15 2.5E-20 134.9 21.6 248 13-298 13-264 (292)
17 KOG4510 Permease of the drug/m 99.6 8.9E-17 1.9E-21 142.8 4.3 265 13-303 39-315 (346)
18 PF00892 EamA: EamA-like trans 99.5 3.4E-14 7.5E-19 114.5 8.1 123 22-152 1-124 (126)
19 COG2510 Predicted membrane pro 99.5 2.6E-13 5.6E-18 108.2 11.1 134 13-153 4-138 (140)
20 PF08449 UAA: UAA transporter 99.4 6E-10 1.3E-14 104.6 26.0 252 27-298 15-279 (303)
21 KOG2765 Predicted membrane pro 99.3 1.9E-11 4.2E-16 113.8 14.2 192 87-297 170-371 (416)
22 TIGR00950 2A78 Carboxylate/Ami 99.3 1.3E-10 2.9E-15 106.0 15.1 132 9-149 125-259 (260)
23 PF13536 EmrE: Multidrug resis 99.1 8.2E-11 1.8E-15 94.3 6.3 101 46-153 2-105 (113)
24 PF04142 Nuc_sug_transp: Nucle 99.1 4.4E-08 9.5E-13 89.1 21.2 212 72-298 13-235 (244)
25 PRK10532 threonine and homoser 98.9 2.2E-08 4.8E-13 93.5 14.5 135 10-154 146-281 (293)
26 PRK11272 putative DMT superfam 98.9 2.4E-08 5.2E-13 93.2 14.1 136 10-153 148-284 (292)
27 KOG1441 Glucose-6-phosphate/ph 98.9 2.2E-08 4.8E-13 93.7 12.1 252 14-297 19-288 (316)
28 PRK11689 aromatic amino acid e 98.8 6.8E-08 1.5E-12 90.3 13.7 132 11-153 155-286 (295)
29 PLN00411 nodulin MtN21 family 98.8 1.5E-07 3.2E-12 90.4 14.2 135 13-155 190-329 (358)
30 KOG2234 Predicted UDP-galactos 98.8 2.3E-05 4.9E-10 73.5 27.9 270 12-298 15-304 (345)
31 COG2510 Predicted membrane pro 98.8 3.6E-08 7.7E-13 79.0 7.8 127 185-324 5-136 (140)
32 TIGR03340 phn_DUF6 phosphonate 98.7 7.9E-08 1.7E-12 89.2 10.1 134 10-151 142-280 (281)
33 PRK11453 O-acetylserine/cystei 98.7 5.8E-07 1.3E-11 84.1 14.9 137 11-153 142-286 (299)
34 PF00892 EamA: EamA-like trans 98.7 8.9E-08 1.9E-12 76.7 8.2 101 193-298 1-108 (126)
35 TIGR00817 tpt Tpt phosphate/ph 98.6 1.3E-07 2.8E-12 88.6 9.6 138 10-153 143-292 (302)
36 KOG2766 Predicted membrane pro 98.5 1.2E-07 2.6E-12 84.6 5.7 170 40-235 47-216 (336)
37 PF03151 TPT: Triose-phosphate 98.5 2.5E-06 5.4E-11 71.4 13.3 133 13-151 1-150 (153)
38 PTZ00343 triose or hexose phos 98.4 4.8E-06 1E-10 79.8 14.6 137 10-152 192-346 (350)
39 TIGR00776 RhaT RhaT L-rhamnose 98.4 5.3E-06 1.1E-10 77.5 12.1 134 10-153 150-287 (290)
40 COG0697 RhaT Permeases of the 98.3 1.2E-05 2.6E-10 73.8 14.1 132 11-153 153-286 (292)
41 KOG1444 Nucleotide-sugar trans 98.3 0.0002 4.3E-09 66.4 20.2 256 11-297 11-281 (314)
42 PRK15430 putative chlorampheni 98.3 1.1E-05 2.5E-10 75.3 12.6 130 15-153 152-284 (296)
43 PRK15051 4-amino-4-deoxy-L-ara 98.3 3E-06 6.4E-11 67.7 6.9 67 81-153 41-108 (111)
44 PF06800 Sugar_transport: Suga 98.2 0.00017 3.7E-09 66.1 17.6 201 74-296 43-247 (269)
45 KOG1443 Predicted integral mem 98.2 0.00024 5.2E-09 65.4 18.1 232 40-298 44-297 (349)
46 KOG1580 UDP-galactose transpor 97.9 0.00016 3.5E-09 64.2 12.0 198 80-297 89-294 (337)
47 KOG1581 UDP-galactose transpor 97.9 0.0011 2.5E-08 61.0 17.4 236 40-298 50-295 (327)
48 PRK02971 4-amino-4-deoxy-L-ara 97.9 0.00013 2.9E-09 59.7 10.4 116 13-153 3-121 (129)
49 PF03151 TPT: Triose-phosphate 97.8 0.00029 6.3E-09 58.8 11.6 115 184-298 1-135 (153)
50 TIGR00688 rarD rarD protein. T 97.8 0.0002 4.4E-09 65.3 11.3 114 183-298 2-124 (256)
51 KOG4314 Predicted carbohydrate 97.8 0.00014 3.1E-09 62.8 9.1 97 87-208 64-160 (290)
52 KOG3912 Predicted integral mem 97.7 0.0014 3.1E-08 59.7 14.6 183 25-227 16-221 (372)
53 PRK13499 rhamnose-proton sympo 97.7 0.0085 1.9E-07 57.1 20.0 178 9-199 4-190 (345)
54 COG5006 rhtA Threonine/homoser 97.7 0.00058 1.3E-08 61.4 10.9 131 10-149 146-277 (292)
55 PF06027 DUF914: Eukaryotic pr 97.6 0.00093 2E-08 63.4 12.4 140 8-154 164-305 (334)
56 PF06800 Sugar_transport: Suga 97.5 0.0014 3.1E-08 60.1 11.0 134 9-151 135-268 (269)
57 PF08449 UAA: UAA transporter 97.2 0.0069 1.5E-07 56.8 13.4 135 13-153 155-296 (303)
58 PF05653 Mg_trans_NIPA: Magnes 97.2 0.0053 1.1E-07 57.6 12.2 63 87-155 61-123 (300)
59 KOG1442 GDP-fucose transporter 97.1 0.0058 1.2E-07 55.7 10.3 244 30-297 46-308 (347)
60 PRK10650 multidrug efflux syst 96.6 0.019 4.1E-07 45.6 9.0 60 87-152 46-106 (109)
61 PRK10452 multidrug efflux syst 96.4 0.0075 1.6E-07 48.7 5.5 65 83-153 36-102 (120)
62 KOG1441 Glucose-6-phosphate/ph 96.4 0.0081 1.8E-07 56.5 6.5 138 9-153 160-306 (316)
63 COG2076 EmrE Membrane transpor 96.4 0.007 1.5E-07 47.5 5.0 63 84-152 37-101 (106)
64 PRK11431 multidrug efflux syst 96.3 0.012 2.6E-07 46.4 6.0 63 84-152 36-100 (105)
65 PRK09541 emrE multidrug efflux 96.2 0.012 2.6E-07 46.8 5.8 65 83-153 36-102 (110)
66 PRK13499 rhamnose-proton sympo 96.1 0.15 3.3E-06 48.6 13.6 145 8-153 170-340 (345)
67 PF10639 UPF0546: Uncharacteri 96.1 0.016 3.5E-07 46.2 5.8 109 18-152 2-112 (113)
68 TIGR00803 nst UDP-galactose tr 96.0 0.072 1.6E-06 47.4 10.5 182 105-298 7-206 (222)
69 PF13536 EmrE: Multidrug resis 95.7 0.034 7.3E-07 44.2 6.3 42 257-298 45-88 (113)
70 COG2962 RarD Predicted permeas 95.6 0.31 6.8E-06 45.0 12.8 123 21-152 157-281 (293)
71 KOG1582 UDP-galactose transpor 95.6 0.1 2.2E-06 47.8 9.3 262 7-297 37-313 (367)
72 PF04657 DUF606: Protein of un 95.6 0.25 5.5E-06 40.9 11.2 107 40-151 29-138 (138)
73 PF00893 Multi_Drug_Res: Small 95.5 0.036 7.8E-07 42.6 5.4 56 83-144 35-92 (93)
74 COG5070 VRG4 Nucleotide-sugar 95.1 0.22 4.8E-06 44.3 9.7 245 29-298 23-278 (309)
75 KOG2765 Predicted membrane pro 94.4 0.31 6.8E-06 46.5 9.6 140 8-153 243-389 (416)
76 COG4975 GlcU Putative glucose 94.0 0.0074 1.6E-07 54.2 -2.0 252 13-297 3-262 (288)
77 PRK15051 4-amino-4-deoxy-L-ara 93.7 0.34 7.3E-06 38.5 7.3 42 257-298 47-91 (111)
78 KOG4510 Permease of the drug/m 93.6 0.048 1E-06 49.7 2.4 133 12-152 191-323 (346)
79 KOG2922 Uncharacterized conser 92.9 0.81 1.7E-05 42.9 9.3 118 9-154 18-136 (335)
80 TIGR00803 nst UDP-galactose tr 91.9 0.95 2.1E-05 40.2 8.4 62 84-151 160-221 (222)
81 COG3238 Uncharacterized protei 91.1 3.7 8.1E-05 34.4 10.5 109 40-152 33-144 (150)
82 COG4975 GlcU Putative glucose 90.7 0.02 4.3E-07 51.5 -3.6 136 10-154 150-285 (288)
83 KOG1580 UDP-galactose transpor 90.6 0.42 9E-06 42.9 4.7 74 74-153 239-312 (337)
84 KOG1581 UDP-galactose transpor 90.2 3.7 8.1E-05 38.3 10.6 135 10-152 170-311 (327)
85 PRK02971 4-amino-4-deoxy-L-ara 89.3 0.79 1.7E-05 37.5 5.0 97 184-298 3-104 (129)
86 PF00893 Multi_Drug_Res: Small 88.5 2.8 6.1E-05 32.0 7.3 42 257-298 39-84 (93)
87 KOG1444 Nucleotide-sugar trans 88.3 2.1 4.5E-05 40.1 7.6 137 11-153 156-299 (314)
88 PRK10452 multidrug efflux syst 88.0 3.1 6.7E-05 33.6 7.5 42 257-298 40-85 (120)
89 PRK10650 multidrug efflux syst 87.8 4.5 9.9E-05 32.0 8.3 42 257-298 45-90 (109)
90 KOG1583 UDP-N-acetylglucosamin 87.6 7.7 0.00017 35.9 10.6 239 42-298 34-296 (330)
91 PRK09541 emrE multidrug efflux 85.9 4.4 9.6E-05 32.1 7.3 42 257-298 40-85 (110)
92 COG2076 EmrE Membrane transpor 84.9 4.9 0.00011 31.6 6.9 42 257-298 40-85 (106)
93 COG5070 VRG4 Nucleotide-sugar 84.1 3.8 8.3E-05 36.7 6.7 137 13-155 156-297 (309)
94 PRK11431 multidrug efflux syst 83.6 7.7 0.00017 30.5 7.7 42 257-298 39-84 (105)
95 PF04657 DUF606: Protein of un 80.7 30 0.00066 28.4 11.0 101 185-289 3-110 (138)
96 PF05653 Mg_trans_NIPA: Magnes 80.0 6.8 0.00015 36.8 7.3 98 180-298 4-104 (300)
97 PF04142 Nuc_sug_transp: Nucle 79.0 50 0.0011 29.9 12.9 121 10-130 112-235 (244)
98 KOG1443 Predicted integral mem 77.3 31 0.00068 32.5 10.4 137 10-152 162-313 (349)
99 KOG3912 Predicted integral mem 76.5 24 0.00051 32.9 9.3 138 8-151 172-331 (372)
100 PF07857 DUF1632: CEO family ( 68.7 64 0.0014 29.5 10.4 134 13-157 1-137 (254)
101 KOG1582 UDP-galactose transpor 66.2 33 0.00071 31.8 7.8 110 38-153 217-331 (367)
102 KOG2766 Predicted membrane pro 58.0 16 0.00034 33.5 4.3 139 5-153 159-298 (336)
103 COG4657 RnfA Predicted NADH:ub 51.9 32 0.0007 29.2 4.8 50 180-229 129-183 (193)
104 KOG1442 GDP-fucose transporter 40.7 76 0.0016 29.6 5.8 143 9-157 182-330 (347)
105 COG3238 Uncharacterized protei 32.7 3E+02 0.0065 23.1 10.6 54 183-236 5-58 (150)
106 CHL00196 psbY photosystem II p 31.7 93 0.002 19.4 3.4 20 183-202 6-25 (36)
107 KOG4831 Unnamed protein [Funct 30.0 87 0.0019 24.7 3.8 118 14-152 5-123 (125)
108 PF06379 RhaT: L-rhamnose-prot 29.7 5.1E+02 0.011 24.9 18.7 181 8-201 3-191 (344)
109 PF11139 DUF2910: Protein of u 29.7 3.8E+02 0.0082 23.4 10.4 44 110-153 160-210 (214)
110 PF06570 DUF1129: Protein of u 29.0 3.9E+02 0.0084 23.3 11.1 13 111-123 178-190 (206)
111 KOG4314 Predicted carbohydrate 28.6 83 0.0018 27.8 3.9 55 259-313 65-132 (290)
112 PF04342 DUF486: Protein of un 25.7 3.3E+02 0.0073 21.4 7.8 46 87-132 41-92 (108)
113 PF06298 PsbY: Photosystem II 25.7 1.4E+02 0.0029 18.7 3.4 21 183-203 6-26 (36)
114 PRK15462 dipeptide/tripeptide 24.2 3.9E+02 0.0084 26.9 8.4 47 105-151 310-359 (493)
115 PRK13240 pbsY photosystem II p 23.5 98 0.0021 19.8 2.6 19 184-202 7-25 (40)
116 COG4665 FcbT2 TRAP-type mannit 20.4 5.6E+02 0.012 22.1 11.4 51 13-64 21-71 (182)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=7.5e-36 Score=284.76 Aligned_cols=300 Identities=32% Similarity=0.509 Sum_probs=236.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGC 87 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~~~~~~~~~~~l~~~g~~g~ 87 (332)
|+.++++.|+..++.+++..++.|.+++.+++|+.+.++|+.+|+++++++.+.++|++ +++.+++++..+++.|++|.
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999987654432 34456788889999999986
Q ss_pred HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCC--C
Q 020034 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL--S 165 (332)
Q Consensus 88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~--~ 165 (332)
.++.+++.|++|+++++|+++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++..++++.....+ .
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 67779999999999999999999999999999999987777777777788899999999999887755443210000 0
Q ss_pred CCCC--CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcc
Q 020034 166 HSGS--PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWK 242 (332)
Q Consensus 166 ~~~~--~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~ 242 (332)
+-|. ..........++..|+++.++|+++||+|++++|+..++++++...++|++.++++...+.+...+.+ ...|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence 0000 00000011223456999999999999999999999988887667888899999988887777765532 23332
Q ss_pred ccchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc----------cceeeeeec
Q 020034 243 LGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH----------CRRRFLSWK 307 (332)
Q Consensus 243 ~~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~----------~~~~~~~~~ 307 (332)
..++.....++|.| +.++|.+|++++++. | ++++.+++|++++++|++++||+++. .|.+.+.|.
T Consensus 250 ~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 250 IHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 22222344566766 778999999999999 7 99999999999999999999999975 566666665
Q ss_pred c
Q 020034 308 F 308 (332)
Q Consensus 308 ~ 308 (332)
+
T Consensus 330 ~ 330 (358)
T PLN00411 330 K 330 (358)
T ss_pred h
Confidence 4
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.97 E-value=5.8e-29 Score=232.81 Aligned_cols=251 Identities=17% Similarity=0.122 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 020034 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIF 92 (332)
Q Consensus 14 ~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~l 92 (332)
.+..++++++||++++++|..++ ++||..+.++|+.++++.++++. . ++ +.+++ .....|++. ..++.+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~~---~~~~~g~~~~~~~~~~ 75 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPLN---LLLGYGLTISFGQFAF 75 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCchH---HHHHHHHHHHHHHHHH
Confidence 46688899999999999999887 49999999999999887776543 1 11 12222 344456655 566678
Q ss_pred HHHHhhc-cChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034 93 SFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (332)
Q Consensus 93 ~~~gl~~-~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~ 171 (332)
++.+++| .++++++++.+++|+++.+++++++|||+++|+ ++|++++++|+.++.. ++.+
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~-~~~~------------ 136 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE-DSLN------------ 136 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc-ccCC------------
Confidence 8899998 588999999999999999999999999998764 9999999999988762 1100
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHcCCC---CCccccch
Q 020034 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLGLD 246 (332)
Q Consensus 172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~--~~~i~~~~~l~g~i~~~~~~~~~~~~~---~~~~~~~~ 246 (332)
. ......|+++.++++++||.|.+++|+..++.++ ......+++..+.+.....+...+.+. ..+...+.
T Consensus 137 ----~-~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (299)
T PRK11453 137 ----G-QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM 211 (299)
T ss_pred ----C-cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence 0 1112469999999999999999999997655432 234456666666655555444444321 11111122
Q ss_pred hhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 247 IGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 247 ~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
..+..++|.| |+++|.+|++++++. + ++.+.+++|++++++|++++||+++.
T Consensus 212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~ 269 (299)
T PRK11453 212 TTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG 269 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 4577788887 999999999999999 6 99999999999999999999999975
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.97 E-value=2.5e-28 Score=227.80 Aligned_cols=251 Identities=11% Similarity=0.024 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI 91 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~ 91 (332)
-...+++..++||++++++|..++ ++||.+++++|+.+++++++++.... +++ ..+++++......|.++ ..++.
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~-~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHP-LPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 355778899999999999999887 69999999999999999999876542 222 22456777888888887 78888
Q ss_pred HHHHHh-hccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCC
Q 020034 92 FSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP 170 (332)
Q Consensus 92 l~~~gl-~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~ 170 (332)
+++.+. ++++++.++++.++.|+++.+++.+ +|||+++++ ++|++++++|+.++... + +
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~~-~-~----------- 144 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNSG-G-N----------- 144 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhcC-c-c-----------
Confidence 999999 9999999999999999999999986 699998764 99999999999876421 1 0
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhH
Q 020034 171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLV 250 (332)
Q Consensus 171 ~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (332)
.+ +...|+++.++|+++||.|.+..||..++ ++...+.+++.++++.+.+.....+.+.... .+...+.
T Consensus 145 ------~~-~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 213 (292)
T PRK11272 145 ------LS-GNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTAL--PTLSGFL 213 (292)
T ss_pred ------cc-cchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccccc--CCHHHHH
Confidence 01 12479999999999999999998886543 2455678888899888877765443221111 1223456
Q ss_pred HHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 251 AVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 251 ~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
.++|.| +.++|.+|++++++. + ++.+.+++|+++++++++++||+++.
T Consensus 214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~ 267 (292)
T PRK11272 214 ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP 267 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 666666 889999999999999 6 99999999999999999999999974
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=1.2e-28 Score=230.28 Aligned_cols=258 Identities=14% Similarity=0.073 Sum_probs=187.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~ 88 (332)
+.++++.++++.++||++++.+|.++++ +||..++++|+.+++++++++. .+++ .++ +++ +....+.++ ..
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~~~~-~~~---~~~-~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--GFPR-LRQ---FPK-RYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--cccc-ccc---ccH-HHHHHHhHHHHH
Confidence 4567889999999999999999998874 9999999999999999988762 1111 111 112 223344445 77
Q ss_pred HHHHHHHHhhc----cChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCC
Q 020034 89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL 164 (332)
Q Consensus 89 ~~~l~~~gl~~----~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~ 164 (332)
++.+++.++++ +++++++++.++.|+++.+++++++|||++++ |++|++++++|++++... +.....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~-- 144 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL-- 144 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--
Confidence 78888888764 57788899999999999999999999999875 499999999999887622 110000
Q ss_pred CCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 020034 165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG 244 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~ 244 (332)
+ + ......+...|+++.++|+++||.|+++.||..++. ++.... ...+++.+.+.....+.+..+++
T Consensus 145 --~---~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~-- 211 (295)
T PRK11689 145 --A---E--LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAMVFS-- 211 (295)
T ss_pred --h---h--hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCccccCC--
Confidence 0 0 000001224699999999999999999999986665 455432 23334444443333322111222
Q ss_pred chhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 245 LDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 245 ~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
. ..+..+++.| ++++|.+|++++|+. | ++.+.+++|++++++|++++||+++.
T Consensus 212 ~-~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~ 269 (295)
T PRK11689 212 L-PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF 269 (295)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 2 3466666766 999999999999999 6 99999999999999999999999974
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=9.4e-28 Score=224.36 Aligned_cols=253 Identities=11% Similarity=-0.009 Sum_probs=184.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--P-QLTFSILCSFFLLSVF 85 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~-~~~~~~~~~l~~~g~~ 85 (332)
++.|++++++++.++||.+++++|.. + ++||.++.++|+.++.++++++...++++.. + ..+++++... ..+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFML-AVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHH-HHHHH
Confidence 66789999999999999999999975 4 5999999999999999988877544321111 0 1133444333 35555
Q ss_pred H-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCC
Q 020034 86 G-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL 164 (332)
Q Consensus 86 g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~ 164 (332)
+ ..++.++++|++++++++++++.++.|+++++++++++|||+++++ ++|++++++|++++....
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~-------- 147 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTF-------- 147 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHc--------
Confidence 5 8899999999999999999999999999999999999999998765 999999999998875110
Q ss_pred CCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 020034 165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 243 (332)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~-~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~ 243 (332)
+.. ..+.++++++||.|+++.|+..++. .+....+.+++.++.....+.. +.+...+..
T Consensus 148 -------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 207 (296)
T PRK15430 148 -------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQ 207 (296)
T ss_pred -------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccC
Confidence 001 1457889999999999988864322 1233444555555554432221 111111111
Q ss_pred cchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 244 GLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 244 ~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
.+...+..+++.| +.++|.+|++++++. | ++.+.+++|++++++||+++||+++.
T Consensus 208 ~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~ 267 (296)
T PRK15430 208 NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGA 267 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 1111122233334 889999999999999 6 99999999999999999999999974
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=7.7e-27 Score=213.37 Aligned_cols=238 Identities=16% Similarity=0.118 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccCh
Q 020034 24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP 102 (332)
Q Consensus 24 wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~l~~~gl~~~sa 102 (332)
||.+++.+|..+++..||....+.|+..+.+++.++... | .+++++......|.++ .+++.++++|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877899999999999998888876432 2 2345566777888888 8999999999999999
Q ss_pred hhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcch
Q 020034 103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182 (332)
Q Consensus 103 ~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (332)
++++++.++.|+++.+++.+++|||+++++ ++|++++++|+.++. .++ + ..+..
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~-~~~-~------------------~~~~~ 127 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLL-SDG-N------------------LSINP 127 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhc-cCC-c------------------ccccH
Confidence 999999999999999999999999998764 999999999998875 211 0 11235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhh---hh
Q 020034 183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV---SS 258 (332)
Q Consensus 183 ~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g---t~ 258 (332)
.|+.+.++++++|+.|.+..|+..++.+ ++...+.+++.++++.+.+.....+.+. .. +...+..+++.+ +.
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 203 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTA 203 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHH
Confidence 7999999999999999999999876653 2345555788899888888766543221 11 123455556555 78
Q ss_pred hHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 259 YWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 259 v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
++|.+|++++++. + ++.+.+++|+++++++++++||+++.
T Consensus 204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~ 246 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL 246 (260)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999 6 99999999999999999999999974
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=2.2e-26 Score=214.86 Aligned_cols=250 Identities=8% Similarity=0.011 Sum_probs=194.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 020034 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGC 87 (332)
Q Consensus 8 ~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~ 87 (332)
-.+.+++.++++++++|+.+.+++|.++++ +||.++.++|+.+++++++++... ++ .+.+++++..+...|++..
T Consensus 8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~~ 82 (293)
T PRK10532 8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSLG 82 (293)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999875 999999999999999998876422 11 1344677777888888777
Q ss_pred HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCC
Q 020034 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 167 (332)
Q Consensus 88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~ 167 (332)
..+.+++++++|++++.++++.++.|+++.+++ +||.+ +..++.++++|+.++. ..+.+
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~-------- 141 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQD-------- 141 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCC--------
Confidence 778889999999999999999999999998876 24321 2456788899998765 21211
Q ss_pred CCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchh
Q 020034 168 GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247 (332)
Q Consensus 168 ~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~ 247 (332)
. +.....|+++.++++++||.|.+..|+..++.+ +..+ .++++++++.+.+.....+. ...++ . .
T Consensus 142 --------~-~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~--~-~ 206 (293)
T PRK10532 142 --------V-SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EALWH--W-S 206 (293)
T ss_pred --------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-cccCC--H-H
Confidence 0 111246999999999999999999999877764 6665 56677788777776654332 11111 1 2
Q ss_pred hhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 248 GLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 248 ~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
.+..++|.| |.++|.+|++++++. + ++.+.++||++++++|++++||+++.
T Consensus 207 ~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~ 263 (293)
T PRK10532 207 ILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL 263 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 233445666 899999999999999 6 99999999999999999999999974
No 8
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.94 E-value=1.3e-25 Score=205.49 Aligned_cols=240 Identities=11% Similarity=0.011 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC----C-CCCCH-HHHHHHHHHHHH
Q 020034 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE----R-PQLTF-SILCSFFLLSVF 85 (332)
Q Consensus 12 ~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~----~-~~~~~-~~~~~l~~~g~~ 85 (332)
|+++++++++++||.+++++|. .+ ++||.++.++|+.++.++++++....+|++ + ++.++ +++..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5889999999999999999998 45 499999999999999998887654432211 0 11112 234456677777
Q ss_pred HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCC
Q 020034 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 165 (332)
Q Consensus 86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~ 165 (332)
...++.+++++++++++++|+++.+++|+++++++++++|||+++++ ++|++++++|++++...++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~-------- 145 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG-------- 145 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC--------
Confidence 78899999999999999999999999999999999999999998765 9999999999987652100
Q ss_pred CCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCcc
Q 020034 166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI---VVSEPSDWK 242 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~---~~~~~~~~~ 242 (332)
+. ..+.++++++||.|.+..|+..++ + ..... .+.....+.... ...+.....
T Consensus 146 --------------~~---~~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 201 (256)
T TIGR00688 146 --------------SL---PWEALVLAFSFTAYGLIRKALKNT-D-LAGFC-----LETLSLMPVAIYYLLQTDFATVQQ 201 (256)
T ss_pred --------------Cc---hHHHHHHHHHHHHHHHHHhhcCCC-C-cchHH-----HHHHHHHHHHHHHHHHhccCcccc
Confidence 01 135688999999999998876432 2 22211 112222222211 111111001
Q ss_pred ccchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHH
Q 020034 243 LGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLL 291 (332)
Q Consensus 243 ~~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~ 291 (332)
..+..+|..+++.| +.++|.++++++++. + ++++.|++|++++++|+++
T Consensus 202 ~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 202 TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 11112455556666 889999999999999 5 9999999999999999875
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.92 E-value=3.4e-23 Score=194.00 Aligned_cols=252 Identities=13% Similarity=0.112 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020034 17 MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVG 96 (332)
Q Consensus 17 ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~g 96 (332)
+++-.++-.+..+.-|.++++--+|..+++.|+.++.+.+.+. +..+.+++++.+++++..++..|++++.++.+.+.+
T Consensus 7 ~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (302)
T TIGR00817 7 FGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556789998754679999999999998776654 211222334567889999999999998888999999
Q ss_pred hhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCC
Q 020034 97 IQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLS 176 (332)
Q Consensus 97 l~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~ 176 (332)
++|+|++.++++.++.|+++++++++++|||++++ +++|++++++|+.+.. +++
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~~----------------- 139 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DTE----------------- 139 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CCc-----------------
Confidence 99999999999999999999999999999999865 4999999999997643 110
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHcCCC-C--Ccc-----ccch
Q 020034 177 PQLSWILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEP-S--DWK-----LGLD 246 (332)
Q Consensus 177 ~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~--~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~-~--~~~-----~~~~ 246 (332)
.+. ...|+++.++|+++||+|.+..||..+ ++ ++..++.+++..+++.+.|.....+... . ++. ....
T Consensus 140 ~~~-~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (302)
T TIGR00817 140 LSF-NWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVT 217 (302)
T ss_pred ccc-cHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCch
Confidence 111 246999999999999999999999877 66 5889999999999999999887655311 0 110 0000
Q ss_pred hhhHHHHhhhhhhHHH----HHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 247 IGLVAVLYSVSSYWHW----VSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 247 ~~~~~ll~~gt~v~~~----l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
..+...++. +..++. ++++++++. | ++++.+++|++++++|++++||+++.
T Consensus 218 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~ 275 (302)
T TIGR00817 218 KIYTVSLVA-AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISP 275 (302)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCch
Confidence 111112222 222343 445789999 7 99999999999999999999999974
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.90 E-value=2.1e-22 Score=186.92 Aligned_cols=253 Identities=10% Similarity=-0.047 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFGCSSQIF 92 (332)
Q Consensus 14 ~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~-r~~~~~~~~~~~~~l~~~g~~g~~~~~l 92 (332)
....++++++|+...+..|...++ -++ ..++++..+.++++|+..... +..++..+++.+..+...++.+..++.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 456788999999999999965443 344 357788888888888765421 2222333344444444444444889999
Q ss_pred HHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCcc
Q 020034 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR 172 (332)
Q Consensus 93 ~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~ 172 (332)
++.|+++++++.++.+.++.|+++++++++++|||+++++ ++|+.+++.|+.++.. ++ .
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~-~~--~------------ 138 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL-SR--F------------ 138 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc-cc--c------------
Confidence 9999999999999999999999999999999999998764 9999999999988752 11 0
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhh
Q 020034 173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL 249 (332)
Q Consensus 173 ~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~---~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (332)
.. ....|+.+.++++++|++|.+..|+..++.++ ....+.+++..+++...+.....+... +.. ....+
T Consensus 139 ----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~ 210 (281)
T TIGR03340 139 ----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MFP-YARQI 210 (281)
T ss_pred ----cc-cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hhh-hHHHH
Confidence 01 12357888999999999999988875444321 112233333333222222221112111 111 11223
Q ss_pred HHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 250 VAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 250 ~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
..+++.+ +.++|.+|++++++. + ++.+.+++|++++++|++++||+++.
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~ 265 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYL 265 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccH
Confidence 3444444 889999999999999 5 99999999999999999999999974
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.90 E-value=1.6e-21 Score=186.33 Aligned_cols=260 Identities=13% Similarity=0.124 Sum_probs=193.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQLT--FSILCSFFLLSVFG 86 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~-p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~--~~~~~~l~~~g~~g 86 (332)
++|.....+.--.+-.......|.+++. +| |..++.+|++++.++..... ..+.+.+|+.+ ++++..++..|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYW-ATGFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4444455555545546667779999875 99 99999999999988765442 22222233332 45778888999999
Q ss_pred HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (332)
Q Consensus 87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~ 166 (332)
...+...+.++++++++.++++.++.|+++++++++++|||++++ ++++++++++|+.+.+. + +
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~------- 188 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E------- 188 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c-------
Confidence 444555679999999999999999999999999999999999875 59999999999988762 1 1
Q ss_pred CCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHHcCCC--
Q 020034 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSEP-- 238 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~------~~~~i~~~~~l~g~i~~~~~~~~~~~~~-- 238 (332)
.+. ...|+++.++|+++||+|.++.|+..++.+ ++..+..+++..|+++++|+....|.+.
T Consensus 189 ----------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~ 257 (350)
T PTZ00343 189 ----------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWV 257 (350)
T ss_pred ----------chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 111 246999999999999999999999876531 3555667778999999999887655321
Q ss_pred CCcc----ccchhhhHHHHhhh--hhhHHHHHHH----Hhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 239 SDWK----LGLDIGLVAVLYSV--SSYWHWVSSW----LVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 239 ~~~~----~~~~~~~~~ll~~g--t~v~~~l~~~----a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
..+. ......+..+++.. ++++|.+|+. ++++. | .++..+++|++++++|++++||+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~ 330 (350)
T PTZ00343 258 PVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTL 330 (350)
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCch
Confidence 1110 00011111222222 8899999995 99999 7 99999999999999999999999974
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.85 E-value=7.2e-19 Score=161.97 Aligned_cols=256 Identities=16% Similarity=0.194 Sum_probs=183.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~ 87 (332)
+........++..+.|+.+....|...+...++....+.|+..+.+++.+.... ++..+.+. .+++....+.+.++ .
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPA-LRPWLLLLLLALLGLA 81 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hccccccc-ccchHHHHHHHHHHHH
Confidence 455677788888899999999999987643677777788999999885544322 11111111 12234455566666 8
Q ss_pred HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHH-HHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (332)
Q Consensus 88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~-l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~ 166 (332)
.++.+++.++++++++.++.+.++.|+++.++++ ++++||++++ ++.|+++++.|++++...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~-------- 147 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG-------- 147 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc--------
Confidence 9999999999999999999999999999999997 6679999875 489999999999988621110
Q ss_pred CCCCccccCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCcccc
Q 020034 167 SGSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLG 244 (332)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~-~~~l~g~i~~~~~~~~~~~~~~~~~~~ 244 (332)
+.+ ...|+.+.++++++||.|.+..|+.. +. ++..... +++........+. ...+.+ .+.
T Consensus 148 -----------~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~- 209 (292)
T COG0697 148 -----------GGILSLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLALLLLLLF-FLSGFG---API- 209 (292)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHHHHH-Hhcccc---ccC-
Confidence 011 35899999999999999999988876 44 3455554 4444122222121 111111 111
Q ss_pred chhhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 245 LDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 245 ~~~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
....+..+.+.| ++++|.++++++++. + ++.+.+++|+++++++++++||.++.
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~ 269 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP 269 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 112344555555 668999999999999 5 88888999999999999999999974
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.78 E-value=1.4e-16 Score=150.05 Aligned_cols=269 Identities=14% Similarity=0.105 Sum_probs=177.9
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHH
Q 020034 11 ALPSVGMVIVL---LAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVF 85 (332)
Q Consensus 11 ~~~~l~ll~~~---~~wg~~~~~~K~~l~~~~~-p~~~~~~R~~~a~i~ll~~~~~~~r~-~~~~~~~~~~~~l~~~g~~ 85 (332)
++-+..+++.+ ++-.+....++..-+.+.+ |..-.+.-+..-.++..+....++++ ...+.-+++|++.++.|++
T Consensus 9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence 33444444333 3345555555554333433 44444555555444444543332111 1112223556677788988
Q ss_pred HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCC
Q 020034 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 165 (332)
Q Consensus 86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~ 165 (332)
-...+++...|++||+.+.+.++..+.-++++++|++++|||.++. |++|+++|++|++++...+....+
T Consensus 89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~---- 158 (334)
T PF06027_consen 89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS---- 158 (334)
T ss_pred HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc----
Confidence 8888899999999999999999999999999999999999998875 599999999999888754321100
Q ss_pred CCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcccc
Q 020034 166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLG 244 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~~~ 244 (332)
+...+.+...||++.+++++.||++++++++..++.+ .....++..++|.+++.+...+.|.. ....++.
T Consensus 159 --------~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~ 229 (334)
T PF06027_consen 159 --------DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT 229 (334)
T ss_pred --------cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC
Confidence 1123445689999999999999999999999998875 67788899999999998877766643 2222322
Q ss_pred chhhhHHHHhhh-hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 245 LDIGLVAVLYSV-SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 245 ~~~~~~~ll~~g-t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
.......+.|.. ..+-|.+....++.- | ...-.....+++++++++++||.++.
T Consensus 230 ~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ 287 (334)
T PF06027_consen 230 SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSW 287 (334)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccH
Confidence 221111112221 233334444555555 5 22222336889999999999999975
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.75 E-value=3.3e-16 Score=141.55 Aligned_cols=254 Identities=11% Similarity=0.043 Sum_probs=187.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--P-QLTFSILCSFFLLSVF 85 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~-~~~~~~~~~l~~~g~~ 85 (332)
...|+++..+.+.++||..+...|.. + +.|+.++.+.|..-+..+++.+....++++. . ..+++.+..+.+.+..
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 34689999999999999999999974 5 5999999999999998888876555433221 1 2345566666667766
Q ss_pred HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCC
Q 020034 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 165 (332)
Q Consensus 86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~ 165 (332)
-..+...|.++.+.-..-+|++=++..|++.++++++|+|||+++ .|+++++++.+|+.......|
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g-------- 147 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG-------- 147 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC--------
Confidence 689999999999999999999999999999999999999999875 569999999999987664322
Q ss_pred CCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccc
Q 020034 166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL 245 (332)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~ 245 (332)
+.+| ..+.=+++|+.|..+.|+ .+ .+ ..+-....++.-....+...+..+.+........
T Consensus 148 ------------~lpw-----val~la~sf~~Ygl~RK~-~~-v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~ 207 (293)
T COG2962 148 ------------SLPW-----VALALALSFGLYGLLRKK-LK-VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNA 207 (293)
T ss_pred ------------CCcH-----HHHHHHHHHHHHHHHHHh-cC-Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCC
Confidence 1233 235558899999977443 33 32 3444444554444444444444332221011011
Q ss_pred hhhhHHHHhhh--hhhHHHHHHHHhhcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 246 DIGLVAVLYSV--SSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 246 ~~~~~~ll~~g--t~v~~~l~~~a~~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
...+..++.+| |.++..+|..+.+++| .+.++|++|..--++|++++||+++.
T Consensus 208 ~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~ 265 (293)
T COG2962 208 NSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDS 265 (293)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 12244455566 9999999999999995 99999999999999999999999975
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.74 E-value=4.9e-16 Score=144.90 Aligned_cols=255 Identities=13% Similarity=0.056 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l 92 (332)
+++..++++++||++.+..|... +.++.++. |..++.+++..+....+ +.+ +..++.+..-++.|+.-...+.+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~~~-~~~~~~~~~g~l~G~~w~ig~~~ 75 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-LPE-FWALSIFLVGLLSGAFWALGQIN 75 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-CCc-ccccHHHHHHHHHHHHHHhhhhh
Confidence 36788899999999999999853 58888876 88888887776655432 211 11133333334444444677799
Q ss_pred HHHHhhccChhhHhHhhc-chhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034 93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (332)
Q Consensus 93 ~~~gl~~~sa~~A~~i~~-~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~ 171 (332)
++.++++++.+.|-.+.+ +.|++..+.+.+++|||.+++++ ...++|+++.++|++++...++++.
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~----------- 142 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA----------- 142 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc-----------
Confidence 999999999999988888 88899999999999999865531 1238999999999988763322110
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCccccchhh
Q 020034 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLF---FFNTILSTAFALIVVSEPSDWKLGLDIG 248 (332)
Q Consensus 172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~---l~g~i~~~~~~~~~~~~~~~~~~~~~~~ 248 (332)
..+...+...|.++.++|+++|+.|.+..|+. ++ +|...++.+. +.++.+..+.. ... .++. ....
T Consensus 143 --~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~--~~~~--~~~~ 211 (290)
T TIGR00776 143 --GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILA--KPLK--KYAI 211 (290)
T ss_pred --ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hcc--cchH--HHHH
Confidence 00000223579999999999999999998865 35 4777744444 44444443322 111 1111 1122
Q ss_pred hHHHHhhh--hhhHHHHHHHHhh-cc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 249 LVAVLYSV--SSYWHWVSSWLVH-MV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 249 ~~~ll~~g--t~v~~~l~~~a~~-~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
+..++ .| +++++.+|..+.+ +. + ++.++.++|+.++++++++++|..+.
T Consensus 212 ~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~ 266 (290)
T TIGR00776 212 LLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK 266 (290)
T ss_pred HHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 22333 45 8899999999999 67 5 99999999999999999999999864
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.73 E-value=1.2e-15 Score=134.86 Aligned_cols=248 Identities=11% Similarity=0.024 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l 92 (332)
++++++.+++.-=+...+.|..... +.|...+.+|..+++++++++. |..+.+.+++++..+...|..-...+.+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsLg~MNl~ 87 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSLGGMNLL 87 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence 6777777666555556678877765 9999999999999999998773 2223456778888899999888788899
Q ss_pred HHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCcc
Q 020034 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR 172 (332)
Q Consensus 93 ~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~ 172 (332)
||.+++..+-+.|..+-++-|+.+.+++. |.. ...+-+.+++.|+.++.-. |..
T Consensus 88 FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr~---------~d~vwvaLAvlGi~lL~p~-~~~------------- 141 (292)
T COG5006 88 FYLSIERIPLGIAVAIEFTGPLAVALLSS---RRL---------RDFVWVALAVLGIWLLLPL-GQS------------- 141 (292)
T ss_pred HHHHHHhccchhhhhhhhccHHHHHHHhc---cch---------hhHHHHHHHHHHHHhheec-cCC-------------
Confidence 99999999999999999999998877653 111 2467788999999887622 211
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccccchhhhHH
Q 020034 173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVA 251 (332)
Q Consensus 173 ~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 251 (332)
....| ..|..+.+++..||++|++..+|.-+..+ ...-...-+.+++++.+|+......+ .-+++.. ..-..
T Consensus 142 ---~~~lD-p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll--~laLg 214 (292)
T COG5006 142 ---VWSLD-PVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLL--PLALG 214 (292)
T ss_pred ---cCcCC-HHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcchhhcChHHH--HHHHH
Confidence 11123 58999999999999999999999865544 44456788899999999987644221 1111110 00111
Q ss_pred HHhhhhhhHHHHHHHHhhcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 252 VLYSVSSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 252 ll~~gt~v~~~l~~~a~~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
+..+++.+.|.+=..++++.| -++...+||.++++.|++++||.++.
T Consensus 215 vavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~ 264 (292)
T COG5006 215 VAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTL 264 (292)
T ss_pred HHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCH
Confidence 222239999999999999994 88999999999999999999999973
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.64 E-value=8.9e-17 Score=142.83 Aligned_cols=265 Identities=12% Similarity=0.063 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l 92 (332)
+.+++.++ ..+.+..++.+..++ .+|.+....|+..--++-.|...+.......+...| ..++++|+.|.....+
T Consensus 39 gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tgvml 113 (346)
T KOG4510|consen 39 GLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTGVML 113 (346)
T ss_pred CceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhHHHH
Confidence 44445555 666666666666553 799999999966665555554333211111111222 2466799999777788
Q ss_pred HHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee---ccCCCCcCCCCCCCC
Q 020034 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF---YKGPPLIGELSHSGS 169 (332)
Q Consensus 93 ~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~---~~g~~~~~~~~~~~~ 169 (332)
.|++++|.|-+.|++|.+.+|+++.+++|.++|||.+. ...+|..+.+.|+++++= .-|++.. +
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIvRPpFlFG~~t~-----g-- 180 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIVRPPFLFGDTTE-----G-- 180 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEecCCcccCCCcc-----c--
Confidence 89999999999999999999999999999999999864 568999999999999871 0121110 0
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc-chhh
Q 020034 170 PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG-LDIG 248 (332)
Q Consensus 170 ~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~-~~~~ 248 (332)
+ +...-.....|..-.+.+++.-|.-.++.|++-|+.. ......+..+++.+..++.....+ .|.++ -..+
T Consensus 181 -~--~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkd 252 (346)
T KOG4510|consen 181 -E--DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKD 252 (346)
T ss_pred -c--ccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc----ceecCccccc
Confidence 0 0111122356777888888888877777777656653 344445666777777665433222 12221 1234
Q ss_pred hHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc---cceee
Q 020034 249 LVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH---CRRRF 303 (332)
Q Consensus 249 ~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~---~~~~~ 303 (332)
++.++.+| +.+++.+.+.++++. + ++...+.+-+++.++.++++||.++. +|.+.
T Consensus 253 r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~ 315 (346)
T KOG4510|consen 253 RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVM 315 (346)
T ss_pred eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceee
Confidence 55556666 788899999999888 6 99999999999999999999999975 55553
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.52 E-value=3.4e-14 Score=114.48 Aligned_cols=123 Identities=18% Similarity=0.332 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 020034 22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS 100 (332)
Q Consensus 22 ~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~l~~~gl~~~ 100 (332)
++||...++.|...++ .||....++|+..+++ ++++....+++..++.+++++......+.++ ..++.+++.+++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4689999999998875 9999999999999998 6666555544433455677788888888887 89999999999999
Q ss_pred ChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 101 sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+++.++.+.++.|+++.+++++++|||++++ +++|+++.++|++++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLI 124 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875 499999999999775
No 19
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.50 E-value=2.6e-13 Score=108.21 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQI 91 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~-~~~~~~~~~l~~~g~~g~~~~~ 91 (332)
..++.+++++++|...++.|+.++ ++||..-+..|.....+++..+....++.+.+ ....|.|.++.+.|+.+.+...
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 456788999999999999999997 59999999999999999999887765443332 2467788999999988899999
Q ss_pred HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
+||.+++...++...-+--++|++++++|+++++||++.++ |+|+.+..+|++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999875 999999999998765
No 20
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.36 E-value=6e-10 Score=104.60 Aligned_cols=252 Identities=14% Similarity=0.141 Sum_probs=178.4
Q ss_pred HHHHHHHHHh-cCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 020034 27 NMEVIKAAMS-KGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPT 103 (332)
Q Consensus 27 ~~~~~K~~l~-~~~~--p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~ 103 (332)
+......... .... |..+++..+....++-.+.....+++..++. .+...+..+++..++..+-+.+++|.|..
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~al~~i~~p 91 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKI---PLKKYAILSFLFFLASVLSNAALKYISYP 91 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcC---hHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 3344444333 2344 8999999999988877765443321222222 34456677788788889999999999999
Q ss_pred hHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchh
Q 020034 104 LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183 (332)
Q Consensus 104 ~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (332)
.-.++-.+.|+.+++++.+++|+|.+++ |++++++..+|+++....+..+... ......++..
T Consensus 92 ~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-----------~~~~~~~~~~ 154 (303)
T PF08449_consen 92 TQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-----------SNSSSFSSAL 154 (303)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-----------cccccccchh
Confidence 9999999999999999999998887654 5999999999998876543221110 0111122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCccc--cchhhhHHHHhhh--
Q 020034 184 GGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWKL--GLDIGLVAVLYSV-- 256 (332)
Q Consensus 184 G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~ll~~g-- 256 (332)
|+++.+.+.++-+...+.++|..++++ ++....++..+.+.+...+.... .+...+.+.. .....+..++...
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999877653 56778889999998888877766 3221111111 1111222322222
Q ss_pred hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
+.++.....+..++. | .++...+.-+++++++++++||+++.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~ 279 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSP 279 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCCh
Confidence 667777777788888 7 88999999999999999999999874
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.34 E-value=1.9e-11 Score=113.81 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (332)
Q Consensus 87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~ 166 (332)
+++++.+..++++|+.+..+++..++-+||..++.++..||+++. |.+++.+++.|++++...+....
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~------ 237 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQN------ 237 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccccc------
Confidence 788889999999999999999999999999999999999999875 69999999999998875432210
Q ss_pred CCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcc
Q 020034 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVVS-EPSDWK 242 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~---~~~~i~~~~~l~g~i~~~~~~~~~~~-~~~~~~ 242 (332)
+ +..+.....|+++.+++|+.||+|+++.||...+.. |...+.++..++..+++.|...+... ..+..+
T Consensus 238 ~-------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~ 310 (416)
T KOG2765|consen 238 S-------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE 310 (416)
T ss_pred c-------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 1 112334578999999999999999999998765542 44455556666777777765544421 112223
Q ss_pred ccchhhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034 243 LGLDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR 297 (332)
Q Consensus 243 ~~~~~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~ 297 (332)
.+...+...+++.+ |.++-++|.++.-.- | +..-..++...+++...++=|..++
T Consensus 311 lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S 371 (416)
T KOG2765|consen 311 LPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPS 371 (416)
T ss_pred CCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCC
Confidence 33333333333333 999999999999888 7 5555666667788888777677765
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.26 E-value=1.3e-10 Score=105.97 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=110.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~--p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g 86 (332)
...++..+.++++++|+.+.+..|...++ .+ +.....+|+.++.+++.++.+..++. +..+.+++..++..+.++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence 45678999999999999999999998753 56 44566678999999999887653322 233566777788888888
Q ss_pred -HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhch
Q 020034 87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 149 (332)
Q Consensus 87 -~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv 149 (332)
...+.++++++++.+++.++.+.++.|++++++++++++||++.+ +++|..+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999875 489999998886
No 23
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.14 E-value=8.2e-11 Score=94.32 Aligned_cols=101 Identities=22% Similarity=0.331 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHH
Q 020034 46 VYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122 (332)
Q Consensus 46 ~~R~~~a~i~ll~~~~~~~r~~--~~~~~~~~~~~l~~~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l 122 (332)
++|+..+.+++..+....+|.. .+..+.+++......|.++ ..++.++++++++++ +.++.+.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998776532211 1122334556667778888 699999999999999 58889999999999999999
Q ss_pred HHhhcccccccccccchhhhhhhhhchhhee
Q 020034 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 123 ~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
++|||+++++ ++|+.++++|++++.
T Consensus 81 ~~~er~~~~~------~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 81 FFKERLSPRR------WLAILLILIGVILIA 105 (113)
T ss_pred HhcCCCCHHH------HHHHHHHHHHHHHHh
Confidence 9999998765 999999999999886
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.06 E-value=4.4e-08 Score=89.11 Aligned_cols=212 Identities=13% Similarity=0.148 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034 72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 72 ~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l 151 (332)
++|+..+..+=+++..+++.+.+.++++.+|+.-.++.++-.++|++++++++|.|++.+| |+++.+-++|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHhe
Confidence 4567778888888888999999999999999999999999999999999999999988764 9999999999988
Q ss_pred eeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHH
Q 020034 152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAF 230 (332)
Q Consensus 152 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~ 230 (332)
+...+....+. ++..+.. ......+...|.++.++++++-++..++..|.+|+.+ +...-+....+.|.++.++.
T Consensus 87 v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~ 162 (244)
T PF04142_consen 87 VQLSSSQSSDN-SSSSSVH---HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA 162 (244)
T ss_pred eecCCcccccc-ccccccc---cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 76432211000 0000000 0011234578999999999999999999999988853 34444555566666666655
Q ss_pred HHHHcCC-C------CCccccchhhhHHHHhhhhhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 231 ALIVVSE-P------SDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 231 ~~~~~~~-~------~~~~~~~~~~~~~ll~~gt~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
....+.+ . ++++. ..|..+... .++=.+....+|+. . =+.-..+.-+++.+.+++++|.+++.
T Consensus 163 ~~~~~~~~~~~~g~f~G~~~---~~~~~i~~~--a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 163 LLLSDGSAISESGFFHGYSW---WVWIVIFLQ--AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HhcccccccccCCchhhcch---HHHHHHHHH--HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 4443321 1 12211 122222222 22233333444444 2 22223345578889999999999975
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.93 E-value=2.2e-08 Score=93.48 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~ 88 (332)
...+.++.+.++++|+...+..|...+ +.+|...... ..++++.++++...... ....++..+...+..|+++ .+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999998765 4788777544 46666777776654321 1123445555566788888 88
Q ss_pred HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (332)
Q Consensus 89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~ 154 (332)
.+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|++....
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999875 59999999999987653
No 26
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.92 E-value=2.4e-08 Score=93.22 Aligned_cols=136 Identities=15% Similarity=0.022 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~ 88 (332)
...+.++.+.++++|+......|... . -++....++++.++++.+.++............+.+.+..+...++++ .+
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999853 2 345667788999999988887654322111112456777888889988 89
Q ss_pred HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
.+.++++++++.++++++.+.++.|++++++++++++|+++.. +++|.++.+.|++++.
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875 4999999999998764
No 27
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.87 E-value=2.2e-08 Score=93.67 Aligned_cols=252 Identities=13% Similarity=0.121 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020034 14 SVGMVIVLLAQVSNMEVIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI 91 (332)
Q Consensus 14 ~l~ll~~~~~wg~~~~~~K~~l~--~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~ 91 (332)
.+....--++-.+.....|..++ +.--|..++..++..+.+..+....+..++..+..++..+..++.+|+..++...
T Consensus 19 ~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v 98 (316)
T KOG1441|consen 19 GIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHV 98 (316)
T ss_pred HHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHH
Confidence 33333333343445556788887 4345899999988888777766544322211111123456677788888888888
Q ss_pred HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (332)
Q Consensus 92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~ 171 (332)
+-..++.+.+.+-...+=.++|++++++++++.+|+.+++. +..++....|+.+.+. ++
T Consensus 99 ~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~---~e------------ 157 (316)
T KOG1441|consen 99 LGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV---TE------------ 157 (316)
T ss_pred hcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee---cc------------
Confidence 89999999999999999999999999999999999987654 6778888888876552 11
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--hc-chHHHHHHHHHHHHHHHHH-HHHHHHcCCCC------Cc
Q 020034 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILR--KF-AAVLIIMFYLFFFNTILST-AFALIVVSEPS------DW 241 (332)
Q Consensus 172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~--~~-~~~~~i~~~~~l~g~i~~~-~~~~~~~~~~~------~~ 241 (332)
...+ ..|.+..+++.++.+...++.++.++ +. -+++....++.-++.+.++ |.....++... .|
T Consensus 158 -----~~fn-~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~ 231 (316)
T KOG1441|consen 158 -----LSFN-LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW 231 (316)
T ss_pred -----cccc-HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc
Confidence 1233 57999999999999999999999874 22 1678888888889988888 77665554321 22
Q ss_pred cccchhhhHHHHhhhhhhHH---HHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034 242 KLGLDIGLVAVLYSVSSYWH---WVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR 297 (332)
Q Consensus 242 ~~~~~~~~~~ll~~gt~v~~---~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~ 297 (332)
+. .....++. +..+| ...++.+.+. | -++...+--++.++.+|++++|+.+
T Consensus 232 ~~----~~~~~~~~-sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt 288 (316)
T KOG1441|consen 232 FV----TFLILLLN-SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVT 288 (316)
T ss_pred ch----hhHHHHHH-HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCc
Confidence 22 12222222 32333 2234555666 5 4555555556666778888888664
No 28
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.82 E-value=6.8e-08 Score=90.29 Aligned_cols=132 Identities=16% Similarity=0.106 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 020034 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ 90 (332)
Q Consensus 11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~ 90 (332)
..+.++.+.++++|+.+.+..|...+ +.+|.... +..+++.+.+.... ........+.+.+..++..++...+.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLF---FILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHH---HHHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999998644 47877653 23444444443333 221112345666777776665448899
Q ss_pred HHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 91 ~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+++..
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999875 4999999999997764
No 29
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.77 E-value=1.5e-07 Score=90.36 Aligned_cols=135 Identities=10% Similarity=0.121 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGC 87 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p-~~~~~~R~~~a~i~ll~~~~~~~r~~~~----~~~~~~~~~l~~~g~~g~ 87 (332)
+..+++.++++|+.+.+..|..... .|| ...+++...++++.+.+.....++...+ ..... ...++..++...
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~ 267 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS 267 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence 6678889999999999999987654 544 4667777777777666655543321111 11222 222333444336
Q ss_pred HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeec
Q 020034 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (332)
Q Consensus 88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~ 155 (332)
+.+.++++++++.+|+.++...++.|++++++++++++|+++..+ ++|.++.+.|+.+....
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhh
Confidence 678899999999999999999999999999999999999998764 99999999999887643
No 30
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.76 E-value=2.3e-05 Score=73.52 Aligned_cols=270 Identities=13% Similarity=0.130 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcC--CC--CCC------CHHHHHH
Q 020034 12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRS--ER--PQL------TFSILCS 78 (332)
Q Consensus 12 ~~~l~ll~~~~~wg~~~~~~K~~l~~~---~~p~~~~~~R~~~a~i~ll~~~~~~~r~--~~--~~~------~~~~~~~ 78 (332)
..++.++...+-+++.....|+.-..+ +.|.+..+.--.+-.++.+...+...|+ ++ ..+ .+++.++
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 456777778888899999999876554 6677777777776666665554443222 11 112 2446667
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCC
Q 020034 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (332)
Q Consensus 79 l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~ 158 (332)
..+=+++..+++.++|.++.+.+|+.-.+..++--+-|++++.+++++|++++| |.++++-++|+.++-....+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCCC
Confidence 777777777888899999999999999999999999999999999999998765 99999999999887622111
Q ss_pred CCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 020034 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE 237 (332)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~ 237 (332)
. +. .+ ......+...|...++++++.-+...++..|.+|+-. +...-+.-..++|.+..+...+..+..
T Consensus 169 ~-~~--a~-------~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~ 238 (345)
T KOG2234|consen 169 P-TG--AK-------SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGE 238 (345)
T ss_pred C-CC--cc-------CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 00 00 0122345678999999999999999999999987743 233333334456655555544443321
Q ss_pred CCCcc---cc-chhhhHHHHhhh-hhhHHHHHHHHhhcc-hhhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 238 PSDWK---LG-LDIGLVAVLYSV-SSYWHWVSSWLVHMV-PVENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 238 ~~~~~---~~-~~~~~~~ll~~g-t~v~~~l~~~a~~~~-~~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
...|. .. ...-|..++-.+ +++.-.+..+=..++ . +....+..+++++.++.++|-+++.
T Consensus 239 ~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK-~f~~s~aiilt~v~S~~Lf~~~~t~ 304 (345)
T KOG2234|consen 239 AINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILK-GFSTSVAIILTTVASIALFDFQLTL 304 (345)
T ss_pred ccccCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHccCCchH
Confidence 10011 01 112233444333 333333322222333 2 1111245577888888888888864
No 31
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.75 E-value=3.6e-08 Score=79.03 Aligned_cols=127 Identities=9% Similarity=-0.054 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhh--hhhHHH
Q 020034 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV--SSYWHW 262 (332)
Q Consensus 185 ~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g--t~v~~~ 262 (332)
.++.+++|+++++-.++.|--+++. ||..-+....++..+.+....+..+.....-.. ....|..++..| ++++..
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGla~glswl 82 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHHHHHHHHH
Confidence 5688999999999999988777777 588888899988888888777766532211111 234566677777 999999
Q ss_pred HHHHHhhcc--h-hhhhcchHHHHHHHHHHHHhCCCccccceeeeeecccCCcCCcceeeeccce
Q 020034 263 VSSWLVHMV--P-VENWTSLCINVQALGHCLLYCHGCRHCRRRFLSWKFNWSNDNCSRILCSDVG 324 (332)
Q Consensus 263 l~~~a~~~~--~-~s~~~~l~pv~~~i~~~l~lgE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (332)
+|++++++- | +.++.-..|+++++++++++||+++. ++| .+|.+|.+|.+.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~---------~~~--iG~~LI~~Gail 136 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSL---------PTW--IGIVLIVIGAIL 136 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCH---------HHH--HHHHHHHhCeee
Confidence 999999999 4 99999999999999999999999984 332 466666666654
No 32
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.71 E-value=7.9e-08 Score=89.17 Aligned_cols=134 Identities=15% Similarity=0.035 Sum_probs=91.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKY----VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVF 85 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~----~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~ 85 (332)
+.++..+.++++++|+...+..|...+ +.+|. ......+...++.+.+.....+++ ........+......+.+
T Consensus 142 ~~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 142 RRKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGL 219 (281)
T ss_pred chhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHH
Confidence 345777888999999999999987532 24442 223333333322222222111111 111122233344555555
Q ss_pred H-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034 86 G-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 86 g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l 151 (332)
. .+.+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|..+.+.|+.+
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 5 788999999999999999999999999999999999999999875 49999999999865
No 33
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.67 E-value=5.8e-07 Score=84.14 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHH
Q 020034 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKG--INKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFLLS 83 (332)
Q Consensus 11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~--~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-----~~~~~~~~~~~l~~~g 83 (332)
..+.++.+.++++|+...+..|...+.. .+......+-..++.+.+.......+... ....+.+.+..++..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4688899999999999999999864331 22233344444444443333333322211 1134567788888899
Q ss_pred HHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 84 VFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 84 ~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
+++ .+.+.+++.++++.++++++.+.++.|++..++++++++|+++.. +++|.++.++|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 888 899999999999999999999999999999999999999999875 4999999999997754
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.67 E-value=8.9e-08 Score=76.75 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccccchhhhHHHHhhh---hhhHHHHHHHHh
Q 020034 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAVLYSV---SSYWHWVSSWLV 268 (332)
Q Consensus 193 ~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~g---t~v~~~l~~~a~ 268 (332)
++||.+.++.|+..++. |+...+++.+..+++ +.+.....+... ..++ ...+...++.| +.+++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLS---PRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCC---hhhhhhhhHhhccceehHHHHHHHHH
Confidence 47899999999998887 489999999999998 666665554321 1121 12344444444 689999999999
Q ss_pred hcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 269 HMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 269 ~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
++. + ++++.+++|+++.++++++++|+++.
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~ 108 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSW 108 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 999 5 99999999999999999999999974
No 35
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.65 E-value=1.3e-07 Score=88.62 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHHHHH-
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---------LTFSILCS- 78 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~-~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~---------~~~~~~~~- 78 (332)
...+.++.++++++|+...+..|...++ +.||..+..+....+.+.++|+....+...... ........
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 3558889999999999999999987651 489999999999999999999876542111000 01111111
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 79 l~~~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
.+..++.. ...+.+++.++++++|..+++..++.|++++++++++++|+++.++ ++|.++.+.|+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHH
Confidence 22333322 3444677889999999999999999999999999999999998865 999999999998754
No 36
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.54 E-value=1.2e-07 Score=84.63 Aligned_cols=170 Identities=17% Similarity=0.162 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHH
Q 020034 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVL 119 (332)
Q Consensus 40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~ll 119 (332)
.|..=.++-+.+-+++-.|+..+ +|+. . +-.|...++.|+...-.+++...+.|||+-+.+.++-.-.-..+.++
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~f-R~~~---~-~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~l 121 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLF-RRKY---I-KAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL 121 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHh-hhHH---H-HHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence 36666777777777777777655 2321 1 12233456677777556677788999999988888876666667889
Q ss_pred HHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 020034 120 AIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF 199 (332)
Q Consensus 120 s~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~ 199 (332)
+|+++|.|-++ .|+.|+++|+.|++.+++.+-.. + +..++.+...||.+.++.|.+||..+
T Consensus 122 sw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~a-g------------d~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 122 SWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVHA-G------------DRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred HHHHHHHHHhh------heeeeEEeEecceEEEEEeeecc-c------------cccCCCCCccCcEEEEecceeeeecc
Confidence 99999998765 46999999999999888542110 0 12335566889999999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHc
Q 020034 200 ILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV 235 (332)
Q Consensus 200 v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~ 235 (332)
+....+.|+.+ ...+.....++|++.+.+= ++.+
T Consensus 183 v~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~ 216 (336)
T KOG2766|consen 183 VSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFE 216 (336)
T ss_pred ccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 99888888874 7778888889999998776 4444
No 37
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.52 E-value=2.5e-06 Score=71.41 Aligned_cols=133 Identities=18% Similarity=0.249 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-C------C--C--CHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-P------Q--L--TFSI 75 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~------~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~-~------~--~--~~~~ 75 (332)
+..+.+.+.++.+...+..|..++. ..+|.++..+-...+.++++|.+...++... + + . ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 3567788999999999999988765 6899999999999999999998877653321 0 0 0 1244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034 76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 76 ~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l 151 (332)
+..++..|+++...+...+..++++||...++....-.+.+.++++++++|+++.+ +++|+.+++.|.++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 55566666777888899999999999999999999999999999999999999875 49999999999865
No 38
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.44 E-value=4.8e-06 Score=79.83 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCC-C----------CCCC
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSE-R----------PQLT 72 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~------~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~----------~~~~ 72 (332)
.+.+.++.++++++|+...+..|..++. ..++.....+-..+++++++|+....+... . ....
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 3568899999999999999999997753 256777777778899999999876432110 0 0111
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034 73 FSILCS-FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 73 ~~~~~~-l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l 151 (332)
...... ++..++...+.+.+.|++++++++..+++..++-|+++.++++++++|+++.. +++|.++.+.|+++
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 111111 22222223555556667999999999999999999999999999999999875 49999999999976
Q ss_pred e
Q 020034 152 V 152 (332)
Q Consensus 152 l 152 (332)
.
T Consensus 346 Y 346 (350)
T PTZ00343 346 Y 346 (350)
T ss_pred H
Confidence 4
No 39
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.35 E-value=5.3e-06 Score=77.48 Aligned_cols=134 Identities=14% Similarity=0.091 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSD---ALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~---~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g 86 (332)
..|+..+.+++.+.++.+....|.. +.||....+... .+++.++.+.. ++.+|. +.+.....++.|++-
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMW 221 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHH
Confidence 3679999999999999999999964 378988854444 44555444432 112222 233444455577776
Q ss_pred HHHHHHHHHHhh-ccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 87 CSSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 87 ~~~~~l~~~gl~-~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
...+.+|+.+.+ +.+++.++.+.+..|+...+.+++++||+.++|++ +.-.+|.++.+.|+.++.
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence 778889999999 99999999999999999999999999999988762 112389999999987754
No 40
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.34 E-value=1.2e-05 Score=73.76 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (332)
Q Consensus 11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~-~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~ 88 (332)
..+.+..+.+.+.|+...+..|... ..++..... +.+..+.....+.. ..... .....+.+..+...|+++ ..
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999765 367777776 44442233332322 11111 234566788888899998 67
Q ss_pred HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
.+.++++++++.+++.++.+.++.|++..+.++++++|+++.++ ++|..+.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998764 899999999987754
No 41
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0002 Score=66.42 Aligned_cols=256 Identities=15% Similarity=0.087 Sum_probs=160.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 020034 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV--YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (332)
Q Consensus 11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~--~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~ 88 (332)
.++.+..+.-.+.-..+.++-|.++.+.=-|..+.. ++.+...+.+...-.. +--+.++++++..++.+-..++..+
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~ 89 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVG 89 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHH
Confidence 334444444444444556667888875323444444 8888777766654322 1111245667777777777777777
Q ss_pred HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCC
Q 020034 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG 168 (332)
Q Consensus 89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~ 168 (332)
+.+.-..+++|.+...-+++-...|+++++...+++|-|.+ +.-+.++....+|....... +
T Consensus 90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~---d--------- 151 (314)
T KOG1444|consen 90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFT---D--------- 151 (314)
T ss_pred HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhccc---c---------
Confidence 77777889999999999999999999999999999885544 44588888888888765421 1
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCc
Q 020034 169 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE------PSDW 241 (332)
Q Consensus 169 ~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~------~~~~ 241 (332)
...+ ..|-.+.+...++-+.+.+..|+..+... ....+.++-.+.....+....+++++. .+.|
T Consensus 152 --------~sf~-~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~ 222 (314)
T KOG1444|consen 152 --------LSFN-LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNW 222 (314)
T ss_pred --------ceec-chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccc
Confidence 1112 34889999999999999999888654421 234566788888888887777776531 1112
Q ss_pred cccchhhhHHHHhhh---hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034 242 KLGLDIGLVAVLYSV---SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR 297 (332)
Q Consensus 242 ~~~~~~~~~~ll~~g---t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~ 297 (332)
.. ...+..+...+ -++.|. -.++.+.. + .++.....-..+.+...++.|++.+
T Consensus 223 ~~--~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~ 281 (314)
T KOG1444|consen 223 SD--SSVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFT 281 (314)
T ss_pred cc--hhHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceec
Confidence 21 11233333332 223332 23555555 4 4444433444455556666666665
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.27 E-value=1.1e-05 Score=75.33 Aligned_cols=130 Identities=10% Similarity=0.014 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHH
Q 020034 15 VGMVIVLLAQVSNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFGCSSQI 91 (332)
Q Consensus 15 l~ll~~~~~wg~~~~~~K~~l~~~-~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~~~~~~~~~~l~~~g~~g~~~~~ 91 (332)
...+.++++|+.+.+..|...+++ .++.....+-..++.+.+++.. ..... ...+...+..+...|+...+.+.
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~ 228 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGIVTTVPLL 228 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999998753221 1223333333334433332221 11110 11122223344445554578899
Q ss_pred HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
+++.++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+.++.
T Consensus 229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 4899999988887765
No 43
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.25 E-value=3e-06 Score=67.72 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=59.9
Q ss_pred HHHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 81 ~~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
..++++ ..++.++..++++.|.+.|-.+.++.|+++++.+++++|||++++| ++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 344466 7889999999999999999999999999999999999999998865 999999999998764
No 44
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.18 E-value=0.00017 Score=66.08 Aligned_cols=201 Identities=12% Similarity=0.008 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhc-chhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 74 ~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~-~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+.+..-++.|++=.+.|..++.++++.+.+.+-=+.. ++=+.+.+.+.++++|.-+.+++ ..-.+++++.++|+.+-
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHh
Confidence 6677777777777888999999999988887755543 44456788899999998765543 13456778888898776
Q ss_pred eeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 020034 153 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFAL 232 (332)
Q Consensus 153 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~ 232 (332)
...++++. ..+...+...|...++.+.+.|..|.++.|- .+. ++..+..=|++.-.+....+..
T Consensus 121 s~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 121 SYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred cccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHHHhh
Confidence 53222110 0011234567999999999999999998664 344 4666655554322222223333
Q ss_pred HHcCCCCCccccchhhhHHHHhhhhhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCc
Q 020034 233 IVVSEPSDWKLGLDIGLVAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGC 296 (332)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~ll~~gt~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~ 296 (332)
+.+++..+ ...+..-+..+++ .++-.+|..+.++. . .=.++-+..+++++.|.++++|.=
T Consensus 185 ~~~~~~~~-k~~~~nil~G~~w---~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~K 247 (269)
T PF06800_consen 185 FSKKPFFE-KKSWKNILTGLIW---GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKK 247 (269)
T ss_pred cccccccc-cchHHhhHHHHHH---HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecC
Confidence 22221111 1111111223333 35566677778777 4 446667779999999999999973
No 45
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.17 E-value=0.00024 Score=65.39 Aligned_cols=232 Identities=17% Similarity=0.171 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHH
Q 020034 40 NKYVIIVYSDALSSLFFLFCSFLFHRSE---RPQLTFSILC-SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAF 115 (332)
Q Consensus 40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~---~~~~~~~~~~-~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~ 115 (332)
-|+.++.+..+.=.++-......++++. |.+.+|++.. ++...|+..+....+..++++|++.+.=+..-..+++|
T Consensus 44 fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 44 FPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence 4777776665444333322222222211 2245666544 46677777788889999999999999988888999999
Q ss_pred HHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHH
Q 020034 116 TFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 195 (332)
Q Consensus 116 ~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~ 195 (332)
+.+++.+|.-||.+++- ..-+.+...|++++. +|.. +.+ ..|..+.++|+++-
T Consensus 124 IllFs~if~lEk~~w~L------~l~v~lI~~Glflft-~KsT-------------------qf~-i~Gf~lv~~aS~~s 176 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFT-YKST-------------------QFN-IEGFFLVLAASLLS 176 (349)
T ss_pred HHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEE-eccc-------------------cee-ehhHHHHHHHHHhh
Confidence 99999999999988742 233333444444443 4432 122 46888888777766
Q ss_pred HHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCcccc-chhhhHHH--HhhhhhhHHHH
Q 020034 196 SAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFALIVVSEP-----SDWKLG-LDIGLVAV--LYSVSSYWHWV 263 (332)
Q Consensus 196 A~~~v~~~~~~~~~~----~~~~i~~~~~l~g~i~~~~~~~~~~~~~-----~~~~~~-~~~~~~~l--l~~gt~v~~~l 263 (332)
.+-=.+....+++.+ .|........-.-.+.++|..+.+|++. +.|... +...+..+ +.+|+..++.+
T Consensus 177 GlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l 256 (349)
T KOG1443|consen 177 GLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLL 256 (349)
T ss_pred hhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 554444444555532 4566666555566667777777777642 122211 11122222 22334555544
Q ss_pred HH--HHh-hcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 264 SS--WLV-HMVP---VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 264 ~~--~a~-~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-. ..+ .+.+ .++..-.--+.+.++|.++.+|+++.
T Consensus 257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~ 297 (349)
T KOG1443|consen 257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL 297 (349)
T ss_pred HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh
Confidence 22 222 2223 55666666778889999999999974
No 46
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.00016 Score=64.16 Aligned_cols=198 Identities=16% Similarity=0.092 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCC
Q 020034 80 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPP 159 (332)
Q Consensus 80 ~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~ 159 (332)
+.+++-..+.+.....++||.+=..+.+=-++-|+=+++++.++.|.+-.|+ |...+.+.+.|+.+.. +|.+.
T Consensus 89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~K 161 (337)
T KOG1580|consen 89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENK 161 (337)
T ss_pred HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccc
Confidence 3455555678888999999998777777778899999999999987776654 5899999999997764 66432
Q ss_pred CcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 020034 160 LIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP 238 (332)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~ 238 (332)
.. ..++.+...|.+++++|-..=.+-...|.|+.+.+. +...++.++.+.+++.+..-.++++...
T Consensus 162 v~-------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElw 228 (337)
T KOG1580|consen 162 VG-------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELW 228 (337)
T ss_pred cC-------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHH
Confidence 21 122445678999999987777777778888755542 4456777777877777655444443210
Q ss_pred C--CccccchhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034 239 S--DWKLGLDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR 297 (332)
Q Consensus 239 ~--~~~~~~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~ 297 (332)
+ .+.......++-+...+ +.+++++...-+... | -|+...-.-.++++.++++++.+++
T Consensus 229 eF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls 294 (337)
T KOG1580|consen 229 EFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLS 294 (337)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCc
Confidence 0 00000111122222223 889999999999999 8 7788888999999999999999986
No 47
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0011 Score=60.95 Aligned_cols=236 Identities=14% Similarity=0.170 Sum_probs=150.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhc--chhHHHH
Q 020034 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTF 117 (332)
Q Consensus 40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~--~~P~~~~ 117 (332)
+|..+.+.+-+.+.++-.. ++..++... ...+-|......++.+.....+.+.+++|.|=..-.+-=. ..|++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~--~l~~~k~~~-~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm-- 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYA--MLKWWKKEL-SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM-- 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHH--HHhcccccC-CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH--
Confidence 5666666666666554422 222233222 2223456677788888888899999999986444333322 55554
Q ss_pred HHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHH
Q 020034 118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA 197 (332)
Q Consensus 118 lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~ 197 (332)
+...++.+.|.+. .+.+..++.-.|+.+-.+.+..+ ..+ .....+...|..+....-+.=+.
T Consensus 125 lmg~Lvy~~ky~~------~eYl~~~LIs~GvsiF~l~~~s~--s~~----------~~g~~ns~~G~~Ll~~~L~fDgf 186 (327)
T KOG1581|consen 125 LMGTLVYGRKYSS------FEYLVAFLISLGVSIFSLFPNSD--SSS----------KSGRENSPIGILLLFGYLLFDGF 186 (327)
T ss_pred HHHHHHhcCccCc------HHHHHHHHHHhheeeEEEecCCC--Ccc----------ccCCCCchHhHHHHHHHHHHHhh
Confidence 4677777666554 45788888888886665443222 000 11123446798888887777777
Q ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc---cccchhhhHHHHhhh-hhhHHHHHHHHhhcc-
Q 020034 198 WFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDW---KLGLDIGLVAVLYSV-SSYWHWVSSWLVHMV- 271 (332)
Q Consensus 198 ~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~g-t~v~~~l~~~a~~~~- 271 (332)
-+-.|+++.+++. ++..+++...+++++......+-.++..+.. ..++...+-.++|.- +.+++.+.++-+++.
T Consensus 187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFG 266 (327)
T ss_pred HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcc
Confidence 7778888877643 5778888888888888766522222211111 112222222334443 789999999999999
Q ss_pred h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 272 P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 272 ~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
| -++++...=.+++.++.+.+|++++.
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~ 295 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSS 295 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence 8 77788888899999999999999974
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.90 E-value=0.00013 Score=59.72 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI 91 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~~~~ 91 (332)
++++++++.++-+...++.|..+++ .+...... +. . ...... .++ ...+..|+.. .+.+.
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~-~~-~------~~~~~~-------~~p---~~~i~lgl~~~~la~~ 63 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAW-DF-I------AALLAF-------GLA---LRAVLLGLAGYALSML 63 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchh-HH-H------HHHHHH-------hcc---HHHHHHHHHHHHHHHH
Confidence 6778888888888889999998764 43332211 11 0 000000 000 1245677777 89999
Q ss_pred HHHHHhhccChhhHhHhhcchhHHHHHHHHH--HHhhcccccccccccchhhhhhhhhchhhee
Q 020034 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l--~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
++..++++.+.+.|.-+.+..+.++.+.++. +++|+++++| ++|+++.++|++++.
T Consensus 64 ~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 64 CWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 9999999999999999999999888888875 8999998864 999999999998875
No 49
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.83 E-value=0.00029 Score=58.78 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHcCCC-C-Cc-cc-c-----chhh
Q 020034 184 GGFFLAAEAFMNSAWFILQALILRK------FAAVLIIMFYLFFFNTILSTAFALIVVSEP-S-DW-KL-G-----LDIG 248 (332)
Q Consensus 184 G~~l~L~aa~~~A~~~v~~~~~~~~------~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~-~-~~-~~-~-----~~~~ 248 (332)
|.++.++|.++.|++.++.|+..++ ..++..+..+....+.+.+.+..++.|.+. . .. .. . ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6788999999999999999998666 237889999999999999999988877532 1 01 00 0 1122
Q ss_pred hHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 249 LVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 249 ~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
+..++..| ..+-.....+.+++. | .++...+-.+...+.|++++||+++.
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~ 135 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP 135 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence 33333333 333334556777888 7 88999999999999999999999874
No 50
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.82 E-value=0.0002 Score=65.31 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCcc-ccchhhhHHHHhhh--
Q 020034 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWK-LGLDIGLVAVLYSV-- 256 (332)
Q Consensus 183 ~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~ll~~g-- 256 (332)
.|..+.+++++.|+...+..|. ..+. +|..+.++.++++++.+.+......+.. ..+. ......+..+...|
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3788999999999999999886 4566 5899999999999888766554432110 0111 00111122233333
Q ss_pred hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
..+.+.++++++++. + ++...+..|++++++++++++|+++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~ 124 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR 124 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 456788999999999 4 88999999999999999999999974
No 51
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.80 E-value=0.00014 Score=62.85 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCC
Q 020034 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (332)
Q Consensus 87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~ 166 (332)
.+.++.|..+++..+++.++.+..+.-.|+.+++++.+++|+.. .|+++.++++.|++.+...+++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN~-------- 129 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADNE-------- 129 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccch--------
Confidence 56788999999999999999999999999999999999999875 4699999999999887732221
Q ss_pred CCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020034 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK 208 (332)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~ 208 (332)
..+...|+.+...|++.-|+|-++.|+...+
T Consensus 130 -----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 130 -----------HADEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred -----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2245789999999999999999999987654
No 52
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.72 E-value=0.0014 Score=59.70 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHHhhcCCCC---------------CCCHHHHHHHHHH
Q 020034 25 VSNMEVIKAAMS---KGIN----KYVIIVYSDALSSLFFLFCSFLFHRSERP---------------QLTFSILCSFFLL 82 (332)
Q Consensus 25 g~~~~~~K~~l~---~~~~----p~~~~~~R~~~a~i~ll~~~~~~~r~~~~---------------~~~~~~~~~l~~~ 82 (332)
+.|.+.+|.+=+ ++-| |...+..-|+-=.+|+..+..++.|...+ +.+.. ..+.=
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~---lfl~P 92 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPV---LFLPP 92 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcc---eecCh
Confidence 345566776422 2233 55555555555567777666554433221 11111 11223
Q ss_pred HHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcC
Q 020034 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG 162 (332)
Q Consensus 83 g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~ 162 (332)
+++......+.+.|+.+|+++.-..+-...-+|+.++|.-+++.+++.+ ||+|+.....|.+++...+-..
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~--- 163 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL--- 163 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc---
Confidence 4445666678899999999999989999999999999999999988765 5999999999998876431100
Q ss_pred CCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Q 020034 163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILS 227 (332)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~-~~~~~i~~~~~l~g~i~~ 227 (332)
+++ | ..+ -.+...|+++.+.|-+.-|+.+++-.|.+++. .+|.....|+.++|.+.+
T Consensus 164 --~~~--p---~~d-~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~ 221 (372)
T KOG3912|consen 164 --VTD--P---YTD-YSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVIL 221 (372)
T ss_pred --ccC--C---ccc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHH
Confidence 000 0 001 13457899999999999999999988887663 368999999999994433
No 53
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.67 E-value=0.0085 Score=57.08 Aligned_cols=178 Identities=12% Similarity=0.049 Sum_probs=108.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH--HHHhhcCC---CCCCCHHHHHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFC--SFLFHRSE---RPQLTFSILCSFFLLS 83 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~--~~~~~r~~---~~~~~~~~~~~l~~~g 83 (332)
+-.-+++..+++.++||++.+-.|.. .. .| .+....=..+-.-++.|+ ..+..|.. ....+.+.+..-++.|
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 45668999999999999999999984 32 33 111111011111111121 11111110 0123455566666666
Q ss_pred HHHHHHHHHHHHHhhccChhhHhHhh-cchhHHHHHHHHHHHhhcc---cccccccccchhhhhhhhhchhheeeccCCC
Q 020034 84 VFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFYKGPP 159 (332)
Q Consensus 84 ~~g~~~~~l~~~gl~~~sa~~A~~i~-~~~P~~~~lls~l~~~Ek~---~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~ 159 (332)
++=...+..++.++++...+.+--+. .+.=+...++..++++|-- +.++ ...-.+|+++.++|+++.... |..
T Consensus 81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A-g~~ 157 (345)
T PRK13499 81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA-GQL 157 (345)
T ss_pred HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh-hhh
Confidence 66678889999999999888875554 4666777788888888753 2222 234688999999999886631 110
Q ss_pred CcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 020034 160 LIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF 199 (332)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~ 199 (332)
.+ +.+ . ++...+.+...|.+..+++.+.++.|.
T Consensus 158 k~----~~~-~--~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 158 KE----RKM-G--IKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred cc----ccc-c--cccccccchHhHHHHHHHHHHHHHHHH
Confidence 00 000 0 000123456789999999999999999
No 54
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00058 Score=61.37 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~~ 88 (332)
..-+..+.+.+..+|..+-+..|.+-+ ..+-..-++.-+.+|+++.+|+..-. ....-.+++.+..-+..|++. .+
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~--ag~~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQ--AGPALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhh--cchhhcChHHHHHHHHHHHHhccc
Confidence 445677888899999999999998753 35677788899999999999997642 111123455555666788888 89
Q ss_pred HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhch
Q 020034 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 149 (332)
Q Consensus 89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv 149 (332)
.+.+...++++.+...-+.+..+.|.+.++.++++++|+++..| |+++.+.+.+.
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAs 277 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAAS 277 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865 67776665554
No 55
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.60 E-value=0.00093 Score=63.44 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=105.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHH
Q 020034 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTF--SILCSFFLLSVF 85 (332)
Q Consensus 8 ~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~--~~~~~l~~~g~~ 85 (332)
.++.++-++++.+++++|.+++.-+...++ .|+.++.+.=-+++.++..+....++++...+.++ +....++..++.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 467889999999999999999999988764 89888887777788887777766666665443333 333332222232
Q ss_pred HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (332)
Q Consensus 86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~ 154 (332)
....+.+.-..+++++|+...+=.-++.++..++.++++||++++. .++|.++.++|.++...
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 2455556667788999887777677889999999999999999874 48999999999988764
No 56
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.45 E-value=0.0014 Score=60.09 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=92.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~ 88 (332)
+..|+++.++++.+.+..+..+.|.. ++||.....-...-..+.-+.+..+. ++. ..+++.+ +-++.|++-..
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~--~~~k~~~-~nil~G~~w~i 207 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKP--FFEKKSW-KNILTGLIWGI 207 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-ccc--ccccchH-HhhHHHHHHHH
Confidence 46778999999999999999998863 37777776655333222222222221 111 1222223 33556666667
Q ss_pred HHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 89 ~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l 151 (332)
.+.+++.+.+....+.+-.+.++.++...+.+.+++||+=++|++ ....+|+++.++|.++
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhhc
Confidence 778899999999999999999999999999999999999666553 3456777777777653
No 57
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.23 E-value=0.0069 Score=56.80 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-----CCCHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RP-----QLTFSILCSFFLLSVF 85 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~-~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~~-----~~~~~~~~~l~~~g~~ 85 (332)
++.+++++.++-|...+..+..++ .+.++.+..++-...+.++.++........+ .+ ..+++.+..++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 888999999999999999998775 3689999999999999888887666521111 10 1123445666777777
Q ss_pred HHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 86 g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
++..+.+.+.-++..++...+++..+--+.+.++|.++++++++..+ |+|+++.+.|..+-.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~------~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ------WIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH------HHHHHHhHHHHHHHH
Confidence 77777787888999999999999999999999999999999988754 999999999987644
No 58
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.0053 Score=57.63 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeec
Q 020034 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (332)
Q Consensus 87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~ 155 (332)
.++..+.+.++.+.+++..+=+..+.-++.++++..++|||++++. +.|+.+++.|..++...
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIF 123 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEe
Confidence 4556777889999999988888888899999999999999998765 89999999999887654
No 59
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0058 Score=55.69 Aligned_cols=244 Identities=14% Similarity=0.038 Sum_probs=130.1
Q ss_pred HHHHHHhcC---C-ChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020034 30 VIKAAMSKG---I-NKYVIIVYSDALSSLFFLFCSFLFHRS----ERPQ--LTFSILCSFFLLSVFGCSSQIFSFVGIQY 99 (332)
Q Consensus 30 ~~K~~l~~~---~-~p~~~~~~R~~~a~i~ll~~~~~~~r~----~~~~--~~~~~~~~l~~~g~~g~~~~~l~~~gl~~ 99 (332)
..|+.++.. . .|..+..++-+....+-+.+.....+. ..|+ ++.+....+.-..+.-.+...+-.+.++|
T Consensus 46 ~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~y 125 (347)
T KOG1442|consen 46 LNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKY 125 (347)
T ss_pred hHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhh
Confidence 356665431 2 488888888777766555555443221 1222 22222222222222222222233455666
Q ss_pred cChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCC
Q 020034 100 SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL 179 (332)
Q Consensus 100 ~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~ 179 (332)
.+.+-=-+=-.+.-+|++++++.++|+|-+.+ ..|-++.+++-+-+ |-+.+ +..+.
T Consensus 126 VgVaFYyvgRsLttvFtVlLtyvllkqkTs~~-------~~~~C~lIi~GF~l----GvdqE-------------~~~~~ 181 (347)
T KOG1442|consen 126 VGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF-------ALGCCLLIILGFGL----GVDQE-------------GSTGT 181 (347)
T ss_pred cceEEEEeccchhhhHHHHhHHhhcccccccc-------cceeehhheehhee----ccccc-------------cccCc
Confidence 55443323334667899999999999986543 33333333322222 32211 11122
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--ccchhhhHHHHhhh
Q 020034 180 SWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDIGLVAVLYSV 256 (332)
Q Consensus 180 ~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g 256 (332)
-...|.+++..|.++-|+..+..||.+.... .-..++.+..+.+.++.+|...+.+.-..-+. -.+....+.++.++
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 2357999999999999999999887655533 34567778888888888887655432111121 11222334445555
Q ss_pred hhhHHHHHHHHhhcc-hhhhhcc-----hHHHHHHHHHHHHhCCCcc
Q 020034 257 SSYWHWVSSWLVHMV-PVENWTS-----LCINVQALGHCLLYCHGCR 297 (332)
Q Consensus 257 t~v~~~l~~~a~~~~-~~s~~~~-----l~pv~~~i~~~l~lgE~~~ 297 (332)
+..+|.+-+.---++ ..|+... .-...-+++++.+++|.-+
T Consensus 262 glfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks 308 (347)
T KOG1442|consen 262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKS 308 (347)
T ss_pred HHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhh
Confidence 555555533221122 1222222 1234456788899999975
No 60
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.63 E-value=0.019 Score=45.56 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 87 CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 87 ~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
..++++...++++.|.+.| ++.....-+.+++.++++++|++++.| ++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence 6788899999999998888 444567778889999999999998764 99999999999764
No 61
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.40 E-value=0.0075 Score=48.70 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 83 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 83 g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
.+.+ ...++++..++++.+.+.|=.+ ....-+.+++.++++++|+++++ |++|+.+.++|++.+-
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 3444 7888999999999999888555 46788889999999999999886 4999999999998765
No 62
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.38 E-value=0.0081 Score=56.54 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=104.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC---C--CCCHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAM---SKGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSF 79 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l---~~~~~p~~~~~~R~~~a~i~ll-~~~~~~~r~~~---~--~~~~~~~~~l 79 (332)
-++.+.+...++.+..+.-.++.|..+ +.+++++.+..+---++.++++ |+....+.... . ..+.+ ....
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence 367789999999999999999999988 3359999999999999999999 88665433222 1 12223 2333
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 80 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 80 ~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
...+++..+.+...|..+.++||-.=++....==..+.+.++++++|+++..+ ..|..++++|+.+..
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHH
Confidence 44446667777888999999998887777654444555678899999988765 999999999998743
No 63
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.007 Score=47.52 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHH-HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 84 ~~g-~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+.+ ...+.++-.++++.+.+.| ++....--+.+++.++++++|+++.+ |++|+.+.++|++.+
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L 101 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence 444 6788999999999998888 45566788889999999999999875 599999999999765
No 64
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.28 E-value=0.012 Score=46.35 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=52.9
Q ss_pred HHH-HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 84 ~~g-~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+.+ ..++++...++++.|.+.| ++.....-+.+++.++++++|++++.| ++|+.+.++|++.+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l 100 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhh
Confidence 444 7888899999999998888 444567788899999999999998864 99999999999875
No 65
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.22 E-value=0.012 Score=46.77 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=54.0
Q ss_pred HHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 83 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 83 g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
.+.+ ...+.++..++++.|.+.|=.+ ....-+.+++.++++++|++++.| ++|+.+.++|++.+-
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 3445 6788888999999998888555 557778889999999999998864 999999999998864
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.11 E-value=0.15 Score=48.64 Aligned_cols=145 Identities=12% Similarity=0.035 Sum_probs=86.9
Q ss_pred cchhhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHH-HHHHh-hc-CCCC----C
Q 020034 8 MRAALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFLF-CSFLF-HR-SERP----Q 70 (332)
Q Consensus 8 ~~~~~~~l~ll~~~~~wg~~~-------~~~K~~l~~~~~p~~~~~~R~~---~a~i~ll~-~~~~~-~r-~~~~----~ 70 (332)
.+..|+.+.++++.+..+... +.-+.+.+.+.+|.....-.+. +++.+.-. ++.+. +| +..+ +
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 356789999999999988888 5555544456777776666665 44443332 22221 12 1110 1
Q ss_pred C-CHHH-HHHHH---HHHHHHHHHHHHHHHHhhccChhhHhH---hh-cchhHHHHHHHHHHHhhcccccccccccchhh
Q 020034 71 L-TFSI-LCSFF---LLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLG 141 (332)
Q Consensus 71 ~-~~~~-~~~l~---~~g~~g~~~~~l~~~gl~~~sa~~A~~---i~-~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~g 141 (332)
. +++. +..++ +.|++=+..+.++..|-+..+.+.+.. +. ++.-++..+-+. ++||+=+-.||.-+.-++|
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 1 1111 22333 333333566667777777775555544 55 555566666666 5899866334445677899
Q ss_pred hhhhhhchhhee
Q 020034 142 TFASIGGAFVVT 153 (332)
Q Consensus 142 i~l~l~Gv~ll~ 153 (332)
+++-++|++++.
T Consensus 329 ~vliI~g~~lig 340 (345)
T PRK13499 329 CVVIILAANIVG 340 (345)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 67
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.08 E-value=0.016 Score=46.18 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020034 18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVF-GCSSQIFSFVG 96 (332)
Q Consensus 18 l~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~-g~~~~~l~~~g 96 (332)
+++.++||..+++.|.+... .++..-.. |..--...+ + .+++ +. ..+. +-.....|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~L-----l--------~n~~---y~--ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKFL-----L--------LNPK---YI--IPFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHHH-----H--------HhHH---HH--HHHHHHHHHHHHHHHH
Confidence 45679999999999997653 44333221 322221111 0 1122 21 2333 35556778899
Q ss_pred hhccChhhHhHhh-cchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 97 IQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 97 l~~~sa~~A~~i~-~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+..++-+.+.-+. .+.=++|++.++++.+|..+++ .++|+.+.+.|+.+.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 9999999888887 4666778888877655554433 499999999998653
No 68
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.01 E-value=0.072 Score=47.43 Aligned_cols=182 Identities=12% Similarity=-0.023 Sum_probs=92.9
Q ss_pred HhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeecc-----------CCCCcCCCCCCCCCccc
Q 020034 105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK-----------GPPLIGELSHSGSPRRL 173 (332)
Q Consensus 105 A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~-----------g~~~~~~~~~~~~~~~~ 173 (332)
....-+..|+++++..+.+.+||.+. .|++++.+...|++.-...+ |.... +.+...+
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~~------~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~--~~~~~~~--- 75 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVTQ------LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIV--QMVQSSA--- 75 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeeeh------HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeee--ecCCCCc---
Confidence 34455677777777777777776652 35777777777765311100 00000 0000000
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHHHHHHHHHHcCC-CCCccc--cchhhh
Q 020034 174 LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYL-FFFNTILSTAFALIVVSE-PSDWKL--GLDIGL 249 (332)
Q Consensus 174 ~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~-~l~g~i~~~~~~~~~~~~-~~~~~~--~~~~~~ 249 (332)
......+...|....+.++++-+...+.+++..++.+........+ .+.+.+............ ..++.. ......
T Consensus 76 ~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (222)
T TIGR00803 76 KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAV 155 (222)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHH
Confidence 0001113456777777777777777777777655432111111111 122222111111111110 111110 011112
Q ss_pred HHHHhhhhhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 250 VAVLYSVSSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 250 ~~ll~~gt~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
+.++.. ..++..+..+.+++. + .+....++++++.+++++++||+++.
T Consensus 156 ~~~~~~-~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~ 206 (222)
T TIGR00803 156 WIVGLL-NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS 206 (222)
T ss_pred HHHHHH-HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 222222 456666788888999 6 88889999999999999999999974
No 69
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.71 E-value=0.034 Score=44.17 Aligned_cols=42 Identities=14% Similarity=-0.024 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHhhcc-h-hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMV-P-VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~-~-~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
..+++.++.++.+.. + +++...+.|++++++++++++|+++.
T Consensus 45 ~~~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~~~er~~~ 88 (113)
T PF13536_consen 45 FGVAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLFFKERLSP 88 (113)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 347899999999999 5 88899999999999999999999974
No 70
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.58 E-value=0.31 Score=44.98 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020034 21 LLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFGCSSQIFSFVGIQ 98 (332)
Q Consensus 21 ~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~--~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~ 98 (332)
++-|+..+..=|.. ++|+.+-...-...-...-+...++...... ..-+.+.+..+...|........++..|-+
T Consensus 157 a~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~ 233 (293)
T COG2962 157 ALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAK 233 (293)
T ss_pred HHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34456666555542 3666665555544444433333333222110 112346677788888888899999999999
Q ss_pred ccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 99 YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 99 ~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+.+-+.-++++|..|.+..+++.++++|+++..| ..+-+..-.|.++.
T Consensus 234 ~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~------~~~F~~IW~aL~l~ 281 (293)
T COG2962 234 RLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQ------LVTFAFIWLALALF 281 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998754 56666656665544
No 71
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.1 Score=47.77 Aligned_cols=262 Identities=11% Similarity=0.071 Sum_probs=148.1
Q ss_pred ccchhhHHHHHHHHHHH-HHHHHHHHHHHHh-cCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 020034 7 SMRAALPSVGMVIVLLA-QVSNMEVIKAAMS-KGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLL 82 (332)
Q Consensus 7 ~~~~~~~~l~ll~~~~~-wg~~~~~~K~~l~-~~~~p--~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~ 82 (332)
..+||+.++....+.++ +=.+...-..... .++.| ..++..+++.-+.+-+.-.... +.+++..++|.... +
T Consensus 37 ~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rtY~~---l 112 (367)
T KOG1582|consen 37 DKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRTYVI---L 112 (367)
T ss_pred cCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhHhhh---h
Confidence 34677777766554433 2333344443332 24665 3577777777655544322211 22223345664333 3
Q ss_pred HHHHHHHHHHHHHHhhccChhhHhHhh--cchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCC
Q 020034 83 SVFGCSSQIFSFVGIQYSSPTLSTAML--NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL 160 (332)
Q Consensus 83 g~~g~~~~~l~~~gl~~~sa~~A~~i~--~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~ 160 (332)
+.+-...+.+...++.|.+=..-.++- -+.|+++ .+.++-+.| +..+..++..+-.+|.+.-.+.+...
T Consensus 113 a~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmi--ggifIqGkR------Y~v~d~~aA~lm~lGli~FTLADs~~- 183 (367)
T KOG1582|consen 113 AFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMI--GGIFIQGKR------YGVHDYIAAMLMSLGLIWFTLADSQT- 183 (367)
T ss_pred HhhhhhccccCcCccccccCcHHHHHHhhhhhhhhh--eeeeecccc------ccHHHHHHHHHHHHHHHhhhhccccc-
Confidence 344345555555555554332222222 2556543 555554444 44566888888888987765432211
Q ss_pred cCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 020034 161 IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPS 239 (332)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~~~ 239 (332)
.++.+ ..|....-.|-++=|.-.-.|.+..+.++ +...+.++...+|.+.++.....++.-.+
T Consensus 184 ---------------sPNF~-~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~ 247 (367)
T KOG1582|consen 184 ---------------SPNFN-LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFS 247 (367)
T ss_pred ---------------CCCcc-eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchh
Confidence 11223 46888888888888887778888877764 44566778888888887776666655455
Q ss_pred Ccccc---chhhhHHHHhhh--hhhHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc
Q 020034 240 DWKLG---LDIGLVAVLYSV--SSYWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR 297 (332)
Q Consensus 240 ~~~~~---~~~~~~~ll~~g--t~v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~ 297 (332)
.|+.- +..-.....+.. +.++...-...++.. + ++......--++.+++++++..+++
T Consensus 248 a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT 313 (367)
T KOG1582|consen 248 AWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFT 313 (367)
T ss_pred hhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchH
Confidence 55431 111112222221 334444433445555 4 7777888888999999999999986
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.57 E-value=0.25 Score=40.86 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHH-HH
Q 020034 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFT-FV 118 (332)
Q Consensus 40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~-~l 118 (332)
+|..-++.-+..+.+.+..+....+++..+..+...| +...-|++|...-.+..+.++..+++.+..+.-+.=+.+ .+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999988776654432222221122 334488999888888889999999998877754433333 33
Q ss_pred HHHH--HHhhcccccccccccchhhhhhhhhchhh
Q 020034 119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 119 ls~l--~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l 151 (332)
+..+ +-.| |++.+..|.+|+.+.++|+++
T Consensus 108 iD~fG~fg~~----~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAP----KRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCC----CCCCCHHHHHHHHHHHHHHhC
Confidence 3332 1112 233345679999999999863
No 73
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.46 E-value=0.036 Score=42.63 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=32.4
Q ss_pred HHHH-HHHHHHHHHHhhccChhhH-hHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhh
Q 020034 83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA 144 (332)
Q Consensus 83 g~~g-~~~~~l~~~gl~~~sa~~A-~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l 144 (332)
.+.+ ...+.++..++++.+.+.| .+...+..+.+++.+.++++|+++.+| ++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 3334 7788899999999999999 445568899999999999999999865 777654
No 74
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.09 E-value=0.22 Score=44.28 Aligned_cols=245 Identities=16% Similarity=0.130 Sum_probs=143.2
Q ss_pred HHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHh
Q 020034 29 EVIKAAMSK-GIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLST 106 (332)
Q Consensus 29 ~~~K~~l~~-~~~-p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~ 106 (332)
+.-|..++. +++ -+.+.+.+.+...+-+..+-+...-+.| ..+.+.| +..+++-....+.--.+++|.+...=+
T Consensus 23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR-~t~aK~W---fpiSfLLv~MIyt~SKsLqyL~vpiYT 98 (309)
T COG5070 23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR-LTKAKKW---FPISFLLVVMIYTSSKSLQYLAVPIYT 98 (309)
T ss_pred HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee-hhhhhhh---cCHHHHHHHHHHhcccceeeeeeeHHH
Confidence 345665542 222 3455666766665555443222111111 1122333 334444444445556789999999999
Q ss_pred HhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHH
Q 020034 107 AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF 186 (332)
Q Consensus 107 ~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 186 (332)
++-++..+.++..-.++++.|++-- .....++-++.-+.-. .|+. . +........+.|-+
T Consensus 99 iFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~-q-----------~~~~~~~~lN~GY~ 158 (309)
T COG5070 99 IFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQ-Q-----------ASAFKAQILNPGYL 158 (309)
T ss_pred HhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhc--cchh-h-----------HHHHHhcccCCceE
Confidence 9999999999999999999988643 2444444444443322 1211 0 00111123467888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccc-cchhhhHHHHhhh--hhhH
Q 020034 187 FLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKL-GLDIGLVAVLYSV--SSYW 260 (332)
Q Consensus 187 l~L~aa~~~A~~~v~~~~~~~--~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~ll~~g--t~v~ 260 (332)
+....+++-|.|.+..|+..+ +..|..+ .+|..+.+..+++.+++++|.. +.+..- .....+.++...| +..-
T Consensus 159 Wm~~NclssaafVL~mrkri~ltNf~d~dt-mfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgi 237 (309)
T COG5070 159 WMFTNCLSSAAFVLIMRKRIKLTNFKDFDT-MFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGI 237 (309)
T ss_pred EEehhhHhHHHHHHHHHHhhcccccchhhH-HHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhh
Confidence 889999999999887776533 3334333 5788899999988888887642 221110 0112233444444 2111
Q ss_pred HHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 261 HWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 261 ~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-.+-.|+++.. + -++...+.-.-..+.|.+++||+.++
T Consensus 238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf 278 (309)
T COG5070 238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNF 278 (309)
T ss_pred hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhH
Confidence 23455778777 4 67777777777789999999999863
No 75
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.44 E-value=0.31 Score=46.52 Aligned_cols=140 Identities=11% Similarity=0.142 Sum_probs=100.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCHHHHHHHHH
Q 020034 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---LTFSILCSFFL 81 (332)
Q Consensus 8 ~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~---~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~---~~~~~~~~l~~ 81 (332)
.+...+-++.+++++++|...++.|.-.+++ +|--.+..+=-++..++++|..++..+..+++ .+......++.
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 4556788999999999999999999865532 56555666666777778887666543322222 12334455677
Q ss_pred HHHHH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 82 ~g~~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
.+++| ++.=++|..|.-.|++-.+++=+.+.....++.-.++.+.+ ++...++|.+..+.|-+++.
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~------~S~~~iiGsi~Ifv~Fv~vn 389 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH------PSALYIIGSIPIFVGFVIVN 389 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHhhee
Confidence 88999 99999999999999999999888766555666666654333 45567999998888887664
No 76
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.99 E-value=0.0074 Score=54.20 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l 92 (332)
.++..++=++.||+...+.... +=+|.+=.--- .++++++..+.+++. .|..+.+.+..-++.|++=.+.|..
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGt-T~GALifaiiv~~~~---~p~~T~~~~iv~~isG~~Ws~GQ~~ 75 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGT-TLGALIFAIIVFLFV---SPELTLTIFIVGFISGAFWSFGQAN 75 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhc-cHHHHHHHHHHheee---cCccchhhHHHHHHhhhHhhhhhhh
Confidence 4567778899999998875542 23444433322 333333333333332 3455666666656666555788899
Q ss_pred HHHHhhccChhhHhHhhc-chhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCc
Q 020034 93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (332)
Q Consensus 93 ~~~gl~~~sa~~A~~i~~-~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~ 171 (332)
++.++++.+.++|-=+.+ ..=+-+.+++.+.++|.-+..+. ....+++++.++|+.+-.. .++.+.
T Consensus 76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~--~~~~nk--------- 142 (288)
T COG4975 76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSK--QDRNNK--------- 142 (288)
T ss_pred hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeee--eccccc---------
Confidence 999999999999866654 45566677888999997655431 1234556667777765432 111110
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH---HHHHHHHHHHHHHHHc-CCCCCccccchh
Q 020034 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYL---FFFNTILSTAFALIVV-SEPSDWKLGLDI 247 (332)
Q Consensus 172 ~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~---~l~g~i~~~~~~~~~~-~~~~~~~~~~~~ 247 (332)
+.++..+.-.|...++.+.+.|..|.++.+... . |..+...=| +.++++.+ ...-+ .......+ ..
T Consensus 143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLPqAiGMv~~ali~---~~~~~~~~~~K~t~--~n 212 (288)
T COG4975 143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILPQAIGMVIGALIL---GFFKMEKRFNKYTW--LN 212 (288)
T ss_pred --cccChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhHHHHHHHHHHHHH---hhcccccchHHHHH--HH
Confidence 112233456788888999999999999866442 3 234433333 33333332 22211 11111111 01
Q ss_pred hhHHHHhhhhhhHHHHHHHHhhcc-hhhhhcc--hHHHHHHHHHHHHhCCCcc
Q 020034 248 GLVAVLYSVSSYWHWVSSWLVHMV-PVENWTS--LCINVQALGHCLLYCHGCR 297 (332)
Q Consensus 248 ~~~~ll~~gt~v~~~l~~~a~~~~-~~s~~~~--l~pv~~~i~~~l~lgE~~~ 297 (332)
-...+.+ +.+-..+..+.++. -+..++. +.-+++++-|.++++|.=+
T Consensus 213 ii~G~~W---a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt 262 (288)
T COG4975 213 IIPGLIW---AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT 262 (288)
T ss_pred HhhHHHH---HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence 1222222 24445555566665 2333333 3467788888999999844
No 77
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=93.71 E-value=0.34 Score=38.52 Aligned_cols=42 Identities=14% Similarity=0.002 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHhhcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
.++++.++..++++.| +.....+.+++++++|++++||+++.
T Consensus 47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~ 91 (111)
T PRK15051 47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSP 91 (111)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4578889999999995 55666699999999999999999974
No 78
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=93.60 E-value=0.048 Score=49.70 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020034 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI 91 (332)
Q Consensus 12 ~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~ 91 (332)
++....+.+++.-++-.+..|.. ....+.+....+=..++.+.-+........-..| ..+++++.+..+|++|.++|+
T Consensus 191 ~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhhhHHHH
Confidence 34555555555556666666654 2223333333333333333222221111111223 456677788889999999999
Q ss_pred HHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 92 l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+...|+|.--++-.++..++.-+++.+.-.+|++|..++ +.|.|.++.+...+..
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~------ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI------WSWVGAVMVVSSTVWV 323 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH------HHhhceeeeehhHHHH
Confidence 999999999999999999999999999999999887665 4477766555544443
No 79
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=0.81 Score=42.92 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=77.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g-~ 87 (332)
....+.++.+.+.++.|+++++-|..+-. . .-...|. .....+.++...|+ .|++- .
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-~---~~~~~ra--------------~~gg~~yl~~~~Ww----~G~ltm~ 75 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-A---GASGLRA--------------GEGGYGYLKEPLWW----AGMLTMI 75 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHH-H---hhhcccc--------------cCCCcchhhhHHHH----HHHHHHH
Confidence 45556666777777788888888876542 1 0011110 11111222212222 33333 3
Q ss_pred HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (332)
Q Consensus 88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~ 154 (332)
+....-|.++.+.+++..+-+.+++-+..++++..+++||++++. .+|..+|++|-.+++.
T Consensus 76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE
Confidence 444444667778888888888889999999999999999998764 8999999999988874
No 80
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.86 E-value=0.95 Score=40.18 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhh
Q 020034 84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 84 ~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~l 151 (332)
+.+...+.+..+-++|.++..-+....+.++++.+++.++++|+++.. +++|..+.+.|+.+
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l 221 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL 221 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence 333556677888999999999999999999999999999999998875 48999999988753
No 81
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.09 E-value=3.7 Score=34.40 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHH-HH
Q 020034 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAF-TF 117 (332)
Q Consensus 40 ~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~-~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~-~~ 117 (332)
+|+.-.+.-+..+.+++..+.+. .++..+ ....+.-++...-|++|..+-..-........++....+.-..=++ ..
T Consensus 33 spl~As~isf~vGt~~L~~l~l~-~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl 111 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLI-KQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGL 111 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999888776 333321 2112222233456677755544555556666665554443322222 22
Q ss_pred HHHHH-HHhhcccccccccccchhhhhhhhhchhhe
Q 020034 118 VLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 118 lls~l-~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
++..+ +++++ ||.++..|++|+++.++|++++
T Consensus 112 liD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 112 LIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 22221 12232 3446677899999999995543
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.66 E-value=0.02 Score=51.49 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS 89 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~ 89 (332)
-.|+...++.+.+.+-...+..+..--++.+.+.--+.-+.++++++-. ++..++.++..+.. .+-|+.=...
T Consensus 150 ~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~------~~~~~~~~K~t~~n-ii~G~~Wa~G 222 (288)
T COG4975 150 LKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF------FKMEKRFNKYTWLN-IIPGLIWAIG 222 (288)
T ss_pred hhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh------cccccchHHHHHHH-HhhHHHHHhh
Confidence 4456666666666665555555543223455555556666666665431 22222333444444 3456555566
Q ss_pred HHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034 90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (332)
Q Consensus 90 ~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~ 154 (332)
+.+++.+-+....+.+=.+.++.-+...+...+++|||=+.|++ ..-++|+++.+.|++++..
T Consensus 223 Nl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 223 NLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhhe
Confidence 77888888887777777778888888899999999999888775 3568899999999877653
No 83
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.65 E-value=0.42 Score=42.94 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 74 ~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
..+..+.+.++.+++.|.+.|.-+.+-+|-.-+++..+--.|+.+.|.+++..+++.|| |+|.++.+.|..+=.
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHh
Confidence 44566778888889999999999999999999999999999999999999999998765 999999999976533
No 84
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.20 E-value=3.7 Score=38.32 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-----CCCHHHHHHHHHH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSE-RP-----QLTFSILCSFFLL 82 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~-~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-~~-----~~~~~~~~~l~~~ 82 (332)
...+++++....+.=|..+..-+...+. .+++..+.+.--+...+.=..- .+ ..+. ++ +.+++-+..+++.
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li-~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LI-LQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hh-cCCCCchHHHHHHcChhHHHHHHHH
Confidence 3445555555444446666665555543 4788888777766665544433 22 2222 22 2345666778899
Q ss_pred HHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 83 g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
+++|+..|.+.|+-++.-++-.-+.|..+==++..++|.+.++.++++.+ |+|+.+.+.|..+=
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLE 311 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHH
Confidence 99999999999999998777777788888888899999999999998875 88888888887653
No 85
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=89.30 E-value=0.79 Score=37.46 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhhhhhHHHH
Q 020034 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSYWHWV 263 (332)
Q Consensus 184 G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gt~v~~~l 263 (332)
|.++.+.+.++-+..-++-|+-.++.++ ...... .. .... ...+ ++ .+..+...+.++++.+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-----~~-~~~~-~~~~----p~------~~i~lgl~~~~la~~~ 64 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-----FI-AALL-AFGL----AL------RAVLLGLAGYALSMLC 64 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-----HH-HHHH-HHhc----cH------HHHHHHHHHHHHHHHH
Confidence 5667788888888887887877666542 111110 00 0000 0000 00 0111111116799999
Q ss_pred HHHHhhcch---hhhhcchHHHHHHHHHHH--HhCCCccc
Q 020034 264 SSWLVHMVP---VENWTSLCINVQALGHCL--LYCHGCRH 298 (332)
Q Consensus 264 ~~~a~~~~~---~s~~~~l~pv~~~i~~~l--~lgE~~~~ 298 (332)
|.+++++.| +.++..+.++...+.++. ++||+++.
T Consensus 65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~ 104 (129)
T PRK02971 65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSL 104 (129)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 999999994 667777777778888875 89999985
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=88.46 E-value=2.8 Score=32.02 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-++++.++.+++|+.| -+++.-+..+..++.|++++||+++.
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~ 84 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSL 84 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4578899999999996 34566678899999999999999974
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.34 E-value=2.1 Score=40.13 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCC-CHHHHHHHHHHH
Q 020034 11 ALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQL-TFSILCSFFLLS 83 (332)
Q Consensus 11 ~~~~l~ll~~~~~wg~~~~~~K~~l~~-~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~-----~~~~-~~~~~~~l~~~g 83 (332)
.++|.++....+.-....+..|+..+. +..-+.+..+--+++...+....+..+... .+.. ...-+..+.+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 447888888888888889999988764 477788889998888888777665432111 1111 123355666777
Q ss_pred HHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 84 ~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
++|.+-.++.++..+..|+..-++.....-..+.+...++.++++++ ...+|+.++++|-++-.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence 77766667888899999988888888555555555556666776665 45999999999987755
No 88
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=87.97 E-value=3.1 Score=33.58 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-++++.++..++|++| -+++.-+-.+.+++.+++++||+++.
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~ 85 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSL 85 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4578899999999886 44555677888999999999999985
No 89
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=87.77 E-value=4.5 Score=32.01 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-.++|.+...++|++| -++..-+-.+.+++.+++++||+++.
T Consensus 45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~ 90 (109)
T PRK10650 45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNR 90 (109)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 5688999999999986 55777778899999999999999974
No 90
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=87.60 E-value=7.7 Score=35.88 Aligned_cols=239 Identities=13% Similarity=0.099 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHhhcchhHHHHHHH
Q 020034 42 YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQY-SSPTLSTAMLNLIPAFTFVLA 120 (332)
Q Consensus 42 ~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~-~sa~~A~~i~~~~P~~~~lls 120 (332)
-.+++.+|++-+.-=+++.-.+. ..+|+.+.|++.... +.+ +..+.+-.+++++ .+-..=-++-.-.++-+++++
T Consensus 34 NLITFaqFlFia~eGlif~skf~-~~k~kiplk~Y~i~V--~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g 109 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFF-TVKPKIPLKDYAITV--AMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG 109 (330)
T ss_pred eehHHHHHHHHHHhceeeecccc-ccCCCCchhhhheeh--hee-eeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence 45666666655443332211111 112455666654432 222 2233344566665 333334455678888999999
Q ss_pred HHHHhhcccccccccccchhhhhhhhhchhheeeccCCCCcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 020034 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI 200 (332)
Q Consensus 121 ~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v 200 (332)
+++.+.|-+. .|+.++.+.=+|+++-.+.+.++... .+.++-+.+.......|..|+.++..|-+.-|.-.+
T Consensus 110 ~il~~k~Ys~------~Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgi 181 (330)
T KOG1583|consen 110 WILLGKRYSL------RQYSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGI 181 (330)
T ss_pred HHhccceeeh------hhhhhHHhhhhhheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9998766554 46889999999998877665444321 000000000111223567899888888888888888
Q ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHcCC---------------CCCccccchhhhHHHHhhhhhhHHHHH
Q 020034 201 LQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE---------------PSDWKLGLDIGLVAVLYSVSSYWHWVS 264 (332)
Q Consensus 201 ~~~~~~~~~~-~~~~i~~~~~l~g~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ll~~gt~v~~~l~ 264 (332)
.|.+.-+++. ++-...++.=+... |..++...+ .+.........|..++. ..+.+..=
T Consensus 182 yqE~~Y~kyGKh~~EalFytH~LsL----P~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~--n~L~Qy~C 255 (330)
T KOG1583|consen 182 YQETTYQKYGKHWKEALFYTHFLSL----PLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF--NVLTQYFC 255 (330)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhcc----chHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH--HHHHHHHH
Confidence 8887766653 44555555554443 333322211 01111111122333333 33444433
Q ss_pred HHHhhcc-----h--hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 265 SWLVHMV-----P--VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 265 ~~a~~~~-----~--~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
..+.-.+ + +++...+.=.++.+++.+.++.++++
T Consensus 256 ikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~ 296 (330)
T KOG1583|consen 256 IKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP 296 (330)
T ss_pred HHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCH
Confidence 3333222 2 77888889999999999999999864
No 91
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=85.89 E-value=4.4 Score=32.10 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-++++.++..+++++| -++..-+..+.+++.|++++||+++.
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~ 85 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4577888888888886 44555567888899999999999975
No 92
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=84.86 E-value=4.9 Score=31.63 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-.++|.+...++|++| -++..-+-.+.+++.|++++||+++.
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~ 85 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL 85 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH
Confidence 4588999999999996 55777788899999999999999985
No 93
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=84.10 E-value=3.8 Score=36.66 Aligned_cols=137 Identities=14% Similarity=0.155 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGC 87 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~-~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~----~~~~~~~~~l~~~g~~g~ 87 (332)
+|+++....+--+..-...|...+ .+..-++..++.-.++..+++.+.+.++.+... .++...+...++.|++..
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv 235 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV 235 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence 455555444433333444554433 236678889999999999999888776543221 244555667777787776
Q ss_pred HHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeec
Q 020034 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (332)
Q Consensus 88 ~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~ 155 (332)
+-.++--+.++-++++.-+....+.-.-.++-+.++++|+.+.. ++..+.+++..-.+...+
T Consensus 236 giSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYava 297 (309)
T COG5070 236 GISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAVA 297 (309)
T ss_pred hhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHHH
Confidence 66677788889999988888888887778888899999998754 488888887766554433
No 94
>PRK11431 multidrug efflux system protein; Provisional
Probab=83.55 E-value=7.7 Score=30.46 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhhcch----hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP----VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~----~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
-+++|.+...++|++| -++..-+-.+.+++.|++++||+++.
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~ 84 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASP 84 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 4578888889998886 55777778899999999999999985
No 95
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=80.66 E-value=30 Score=28.41 Aligned_cols=101 Identities=11% Similarity=-0.022 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhh---hhhHH
Q 020034 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSV---SSYWH 261 (332)
Q Consensus 185 ~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g---t~v~~ 261 (332)
.++.+++...-++...++.++.++..+|..-+.+.+..|.+.+..+..+.++. ++.......|+ .|.| +.+--
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w--~~lGG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWW--AYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChH--HhccHHHHHHHH
Confidence 45678888888888888888877776689999999999999998877776542 11111111222 2333 33334
Q ss_pred HHHHHHhhcc-h---hhhhcchHHHHHHHHHH
Q 020034 262 WVSSWLVHMV-P---VENWTSLCINVQALGHC 289 (332)
Q Consensus 262 ~l~~~a~~~~-~---~s~~~~l~pv~~~i~~~ 289 (332)
....+..+++ + +.....-|-+.+.++..
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~ 110 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDH 110 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777 5 22222234444444443
No 96
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=79.98 E-value=6.8 Score=36.78 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=62.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHhhhhhh
Q 020034 180 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSVSSY 259 (332)
Q Consensus 180 ~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gt~v 259 (332)
++..|.++.+.++++.+....++|+-..|.+. ...- .. .+ ...+.. ....|.+++.. .+
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~--~~-~~-----~~~~l~----------~~~W~~G~~~~--~~ 62 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLR--AG-SG-----GRSYLR----------RPLWWIGLLLM--VL 62 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc--cc-ch-----hhHHHh----------hHHHHHHHHHH--hc
Confidence 46789999999999999999999987666432 0000 00 00 001110 11123333322 24
Q ss_pred HHHHHHHHhhcch---hhhhcchHHHHHHHHHHHHhCCCccc
Q 020034 260 WHWVSSWLVHMVP---VENWTSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 260 ~~~l~~~a~~~~~---~s~~~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
+..+...++.-.| ++++..+.-++.++++..+++|+++.
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~ 104 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTR 104 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchH
Confidence 4445555666664 77788888899999999999999974
No 97
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=78.96 E-value=50 Score=29.91 Aligned_cols=121 Identities=9% Similarity=0.043 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CC-CHHHHHHHHHHHHHH-
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QL-TFSILCSFFLLSVFG- 86 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~-~~-~~~~~~~l~~~g~~g- 86 (332)
...+.+.++.++++-|...+.....+..+-.|+..--.+..+.++++..+......+... +. -.+.+-.....-++.
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence 456788888888998999999877676544566666666555555554443322211111 10 011111111112222
Q ss_pred HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccc
Q 020034 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW 130 (332)
Q Consensus 87 ~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~ 130 (332)
.....+.-.-++|.+.-.=+.-....-+.++++++.+++.+++.
T Consensus 192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 34445555667888877767777788899999999999998875
No 98
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=77.30 E-value=31 Score=32.45 Aligned_cols=137 Identities=15% Similarity=0.055 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CCC----HH
Q 020034 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKG----INKYVIIVYSDALSSLFFLFCSFLFHRSERP-------QLT----FS 74 (332)
Q Consensus 10 ~~~~~l~ll~~~~~wg~~~~~~K~~l~~~----~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~-------~~~----~~ 74 (332)
..-+......+.++-|.-+.+.+..+..+ =+|+...+.=--..++.++|..+.++.-.+- ... .+
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 34467777788888888888888877642 2466666655556666777766665432210 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 75 ILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 75 ~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
....+.+.|...+..-.+.+.=+..|+.-..++..-.-=+.+.+++..+.+|+++.- .|.|..++..|+..-
T Consensus 242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 222222233332222223344456666666666655666778889999999999854 499999999999763
No 99
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=76.46 E-value=24 Score=32.90 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=87.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH-HHHHhcCCChHHHHHHHHHHHHHHH----HHHHHHhhc-CC--CCCCCHHHHHHH
Q 020034 8 MRAALPSVGMVIVLLAQVSNMEVI-KAAMSKGINKYVIIVYSDALSSLFF----LFCSFLFHR-SE--RPQLTFSILCSF 79 (332)
Q Consensus 8 ~~~~~~~l~ll~~~~~wg~~~~~~-K~~l~~~~~p~~~~~~R~~~a~i~l----l~~~~~~~r-~~--~~~~~~~~~~~l 79 (332)
++...+.++.++++++-+.-++.= |+....+++|++.+.+.-.++..++ .|..++... .. .++-.+.||...
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 456778899999999999988884 4444456999999999988774433 344333211 11 133335555433
Q ss_pred H---------HHHHHH-HHHHHHH-HHHh---hccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhh
Q 020034 80 F---------LLSVFG-CSSQIFS-FVGI---QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFAS 145 (332)
Q Consensus 80 ~---------~~g~~g-~~~~~l~-~~gl---~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~ 145 (332)
+ ..++.+ .....++ +.|+ ++.|+++=.++=.+=-.++.+++.....|++..- ++.|.++-
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliL 325 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLIL 325 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHH
Confidence 2 223333 2222221 2232 3456666666666666777788888999998764 58999999
Q ss_pred hhchhh
Q 020034 146 IGGAFV 151 (332)
Q Consensus 146 l~Gv~l 151 (332)
..|+++
T Consensus 326 i~Gi~l 331 (372)
T KOG3912|consen 326 IMGIIL 331 (372)
T ss_pred HHHHHH
Confidence 999875
No 100
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=68.66 E-value=64 Score=29.54 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFL-FCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI 91 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll-~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~ 91 (332)
+++..+++.+++|++++=.|.. +. -|++.+- +.....+++ .+.....+ ..|+.. ..-.+.|.+=+..+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQ---w~~~~~i~~~g~~v~~~~-~~p~f~----p~amlgG~lW~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQ---WVMCSGIFLVGLVVNLIL-GFPPFY----PWAMLGGALWATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHHH---HHHHHHHHHHHHHHHHhc-CCCcce----eHHHhhhhhhhcCce
Confidence 4678889999999999999974 43 4765443 333333222 22222222 223321 122333344345556
Q ss_pred HHHHHhhccChhhHhHhhcchhHHH-HHHHHH-HHhhcccccccccccchhhhhhhhhchhheeeccC
Q 020034 92 FSFVGIQYSSPTLSTAMLNLIPAFT-FVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG 157 (332)
Q Consensus 92 l~~~gl~~~sa~~A~~i~~~~P~~~-~lls~l-~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g 157 (332)
+-.-.++...-+.+-.+-+..=+.+ ...+++ +++++.+.-+ .....++|++++++|..+..+-|.
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecC
Confidence 6677788877777777765433333 333433 3444433222 123578999999999988776554
No 101
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=66.19 E-value=33 Score=31.83 Aligned_cols=110 Identities=13% Similarity=0.158 Sum_probs=80.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhcC--CC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHhhcch
Q 020034 38 GINKYVIIVYSDALSSLFFLFCSFLFHRS--ER---PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLI 112 (332)
Q Consensus 38 ~~~p~~~~~~R~~~a~i~ll~~~~~~~r~--~~---~~~~~~~~~~l~~~g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~ 112 (332)
.-+..++.++.+.++..+++........- .+ .+.+.|...+.++.++.|++.+.+...=++.-++..|+.+...=
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 45678888899999988888766543210 01 13456777788888888877777777777888899999999888
Q ss_pred hHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 113 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 113 P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
-..|.++|++++..+++... .-|..+.+.|+++=.
T Consensus 297 KavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~ 331 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNM 331 (367)
T ss_pred hHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhc
Confidence 99999999999988887643 334556777887643
No 102
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=58.05 E-value=16 Score=33.54 Aligned_cols=139 Identities=9% Similarity=0.072 Sum_probs=83.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 020034 5 MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSV 84 (332)
Q Consensus 5 ~~~~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~ 84 (332)
.++.+..++-.++++.+.+++.+++.-...... .|-.++...=-++++++-..- .+++|++...++|..-....+...
T Consensus 159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~ 236 (336)
T KOG2766|consen 159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFA 236 (336)
T ss_pred cCCCCCccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHH
Confidence 334567888899999999999999988876654 888888888888888776655 445565554555542222222222
Q ss_pred HH-HHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 85 FG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 85 ~g-~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
+. ++.+-+.-.=++..+++.-.+=.-++-.|..++ ..++-+++|- -.++......|.++..
T Consensus 237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIYS 298 (336)
T ss_pred HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEee
Confidence 22 222222222344455544433333455555554 3345567653 2677777778876653
No 103
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=51.87 E-value=32 Score=29.20 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHH
Q 020034 180 SWILGGFFLAAEAFMNSAWFILQALILRKF-----AAVLIIMFYLFFFNTILSTA 229 (332)
Q Consensus 180 ~~~~G~~l~L~aa~~~A~~~v~~~~~~~~~-----~~~~~i~~~~~l~g~i~~~~ 229 (332)
++.-.....+.|++.|++-+++...+.+|. |.|..=..+....+++.++.
T Consensus 129 ~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSla 183 (193)
T COG4657 129 NFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLA 183 (193)
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHH
Confidence 344457778899999999998876654443 33333333444445544433
No 104
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.71 E-value=76 Score=29.57 Aligned_cols=143 Identities=19% Similarity=0.130 Sum_probs=86.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhc--CC--CCCC-CHHHHHHHHHH
Q 020034 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHR--SE--RPQL-TFSILCSFFLL 82 (332)
Q Consensus 9 ~~~~~~l~ll~~~~~wg~~~~~~K~~l~~-~~~p~~~~~~R~~~a~i~ll~~~~~~~r--~~--~~~~-~~~~~~~l~~~ 82 (332)
-.+.+.+.-+.+.+.-+.+.+..|..+.. +=.-..+.++-...+.++++|...+.+. +. .|.. ..+-|..+.+.
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 45677777788888888888888865432 1134678888889999999998766421 11 1233 34445566677
Q ss_pred HHHHHHHHHHHHHHhhccChhhHhHhhcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheeeccC
Q 020034 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG 157 (332)
Q Consensus 83 g~~g~~~~~l~~~gl~~~sa~~A~~i~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g 157 (332)
|++|+...+.-.+-++.|||-.=.+=...=-.-=.+++..+++|.-+.-+ |-+.++.+.|.......++
T Consensus 262 glfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred HHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHHH
Confidence 78873222333344556665432111111122234578888999866544 6677788888766554443
No 105
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.72 E-value=3e+02 Score=23.10 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 020034 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS 236 (332)
Q Consensus 183 ~G~~l~L~aa~~~A~~~v~~~~~~~~~~~~~~i~~~~~l~g~i~~~~~~~~~~~ 236 (332)
+..++.++|..+-+...-...++.+...+|..-..+.+++|++++..+..+.++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~ 58 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG 58 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 557778888888888888888887777778998999999999999888877543
No 106
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=31.73 E-value=93 Score=19.44 Aligned_cols=20 Identities=15% Similarity=-0.250 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 020034 183 LGGFFLAAEAFMNSAWFILQ 202 (332)
Q Consensus 183 ~G~~l~L~aa~~~A~~~v~~ 202 (332)
+=+++.++.+.+||+|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34667789999999999863
No 107
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=29.97 E-value=87 Score=24.70 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020034 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFS 93 (332)
Q Consensus 14 ~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~r~~~~~~~~~~~~~l~~~g~~g~~~~~l~ 93 (332)
...++.+.++||..+++.|.+-. +.+..--.. |-..- ..++-+. -.+.++.++.+ ++ +-....+|
T Consensus 5 ~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~k~~~--------~lqe~~t-l~l~w~Y~iPF-ll---NqcgSaly 69 (125)
T KOG4831|consen 5 MDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSS-RKIMI--------ALQEMKT-LFLNWEYLIPF-LL---NQCGSALY 69 (125)
T ss_pred HHHHHHHHHHHccccHHHHHHHh-hHhhccCch-HHHHH--------HHHHHHH-HHHhHHHHHHH-HH---HHhhHHHH
Confidence 34578889999999999997532 222111000 11000 0011000 01234433332 22 22334567
Q ss_pred HHHhhccChhhHhHhhc-chhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhe
Q 020034 94 FVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (332)
Q Consensus 94 ~~gl~~~sa~~A~~i~~-~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll 152 (332)
|.-+++++-+.|.=+.+ +.-.|+++.+..+ +|+...|+ .++|..+.++|+.+.
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhhe
Confidence 77888888777766654 4556677777655 78876543 588999999998664
No 108
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=29.72 E-value=5.1e+02 Score=24.86 Aligned_cols=181 Identities=15% Similarity=0.059 Sum_probs=96.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh--hcCCC---CCCCHHHHHHHHHH
Q 020034 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLF--HRSER---PQLTFSILCSFFLL 82 (332)
Q Consensus 8 ~~~~~~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~--~r~~~---~~~~~~~~~~l~~~ 82 (332)
++-..+.++..+..++-|+..+=.|..-+ .+ .+....=..+-+-+++|+..-. -+... ...+.+.+...++.
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk~--Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKVKG--WS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhcCC--cc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 34566888888999999999988998643 22 3333333445555556654321 11100 12233445555555
Q ss_pred HHHHHHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhh--cccccccccccchhhhhhhhhchhheeeccCCC
Q 020034 83 SVFGCSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLE--KLNWENKSSQAKSLGTFASIGGAFVVTFYKGPP 159 (332)
Q Consensus 83 g~~g~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~E--k~~~~~~~s~~~~~gi~l~l~Gv~ll~~~~g~~ 159 (332)
|++=.+....|=.+++|...+...-| ..+.-++-.++-.++.++ .+ ..+...+...+|++++++|+.+.... |..
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l-~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~ 157 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDEL-LATPSGQIVLLGVAVCLIGIAICGKA-GSM 157 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccc-ccCCCchhhhhHHHHHHHHHHHHhHH-HHh
Confidence 55533445566677777655543222 122222222222222211 11 11112456799999999999887522 211
Q ss_pred CcCCCCCCCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 020034 160 LIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFIL 201 (332)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~A~~~v~ 201 (332)
-+. + . +....+.+...|.+..+.|.+.-|++.+-
T Consensus 158 Ke~--~---~---~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 158 KEK--E---L---GEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred hhh--h---h---ccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 110 0 0 01123445677999999998888887764
No 109
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=29.69 E-value=3.8e+02 Score=23.37 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHHHHhhccc-----ccccccc--cchhhhhhhhhchhhee
Q 020034 110 NLIPAFTFVLAIIFRLEKLN-----WENKSSQ--AKSLGTFASIGGAFVVT 153 (332)
Q Consensus 110 ~~~P~~~~lls~l~~~Ek~~-----~~~~~s~--~~~~gi~l~l~Gv~ll~ 153 (332)
...|+.+.++.+...+||.+ .++|..+ .+..+.++.++|+.++.
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 47888888888888887762 1222222 36778888888887753
No 110
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=29.05 E-value=3.9e+02 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.5
Q ss_pred chhHHHHHHHHHH
Q 020034 111 LIPAFTFVLAIIF 123 (332)
Q Consensus 111 ~~P~~~~lls~l~ 123 (332)
+.|....+++.+.
T Consensus 178 l~~~~~iiig~i~ 190 (206)
T PF06570_consen 178 LPPWVYIIIGVIA 190 (206)
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444433
No 111
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=28.60 E-value=83 Score=27.82 Aligned_cols=55 Identities=4% Similarity=-0.107 Sum_probs=42.4
Q ss_pred hHHHHHHHHhhcc-h--hhhhcchHHHHHHHHHHHHhCCCcc----------ccceeeeeecccCCcC
Q 020034 259 YWHWVSSWLVHMV-P--VENWTSLCINVQALGHCLLYCHGCR----------HCRRRFLSWKFNWSND 313 (332)
Q Consensus 259 v~~~l~~~a~~~~-~--~s~~~~l~pv~~~i~~~l~lgE~~~----------~~~~~~~~~~~~~~~~ 313 (332)
.+-++|..+++++ | ++.+..-.--+.-+++|+++||++. ..|.|.+..+.|-.++
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 3456788899999 7 7777777778888999999999985 2788888877664443
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=25.71 E-value=3.3e+02 Score=21.42 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHHH-----HhhccChhhHhHhhcchhHHH-HHHHHHHHhhcccccc
Q 020034 87 CSSQIFSFV-----GIQYSSPTLSTAMLNLIPAFT-FVLAIIFRLEKLNWEN 132 (332)
Q Consensus 87 ~~~~~l~~~-----gl~~~sa~~A~~i~~~~P~~~-~lls~l~~~Ek~~~~~ 132 (332)
++.-+++.. |.+.-|+++--+++-..-+.+ +.+|.+++||++++..
T Consensus 41 AffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~ 92 (108)
T PF04342_consen 41 AFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY 92 (108)
T ss_pred HHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH
Confidence 444444443 344445555555554333332 4578889999998864
No 113
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=25.65 E-value=1.4e+02 Score=18.74 Aligned_cols=21 Identities=19% Similarity=-0.119 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 020034 183 LGGFFLAAEAFMNSAWFILQA 203 (332)
Q Consensus 183 ~G~~l~L~aa~~~A~~~v~~~ 203 (332)
+=++..++.|.+|++|++...
T Consensus 6 liVl~Pil~A~gWa~fNIg~~ 26 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGRA 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 346677888999999998743
No 114
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=24.22 E-value=3.9e+02 Score=26.94 Aligned_cols=47 Identities=2% Similarity=-0.092 Sum_probs=27.1
Q ss_pred HhHhhcchhHHHHHHHHHH--Hhhcccc-cccccccchhhhhhhhhchhh
Q 020034 105 STAMLNLIPAFTFVLAIIF--RLEKLNW-ENKSSQAKSLGTFASIGGAFV 151 (332)
Q Consensus 105 A~~i~~~~P~~~~lls~l~--~~Ek~~~-~~~~s~~~~~gi~l~l~Gv~l 151 (332)
++.+++..|+++.+++-++ +-.|..+ +|.|+..+-.++.+.++|...
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 6788999999998777543 2123321 223444444555555555543
No 115
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=23.51 E-value=98 Score=19.84 Aligned_cols=19 Identities=11% Similarity=-0.288 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020034 184 GGFFLAAEAFMNSAWFILQ 202 (332)
Q Consensus 184 G~~l~L~aa~~~A~~~v~~ 202 (332)
=++..++.+.+||+|++..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 3667789999999999863
No 116
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.43 E-value=5.6e+02 Score=22.05 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 020034 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH 64 (332)
Q Consensus 13 ~~l~ll~~~~~wg~~~~~~K~~l~~~~~p~~~~~~R~~~a~i~ll~~~~~~~ 64 (332)
...++++.+++-+..+++.|.+.+. -+--.+=+=-+++++++++..++-.+
T Consensus 21 ~~swLvl~~vl~~~~nvv~Ry~~N~-sSna~lEaqWyLF~~vFllaaaYtL~ 71 (182)
T COG4665 21 AASWLVLVAVLVSAGNVVMRYAFNM-SSNAWLEAQWYLFGAVFLLAAAYTLK 71 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557778888889999999998642 33333444457788888887766443
Done!