Query 020034
Match_columns 332
No_of_seqs 124 out of 1098
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.1 2.9E-06 1E-10 69.1 5.1 68 81-154 34-103 (137)
2 3b5d_A Multidrug transporter E 98.0 6.1E-06 2.1E-10 64.6 5.9 67 81-153 34-102 (110)
3 2i68_A Protein EMRE; transmemb 96.4 0.0015 5E-08 53.0 2.5 42 257-298 40-85 (137)
4 3b5d_A Multidrug transporter E 94.8 0.12 4.2E-06 39.7 8.0 42 257-298 40-85 (110)
5 3arc_L Photosystem II reaction 12.1 2.4E+02 0.0083 16.7 3.1 26 3-28 10-35 (37)
6 2hac_A T-cell surface glycopro 9.0 2.3E+02 0.0079 16.4 2.2 16 115-130 15-30 (33)
7 3mp7_B Preprotein translocase 3.7 2.1E+02 0.0071 19.1 -0.1 24 126-149 23-46 (61)
8 1kth_A Collagen alpha 3(VI) ch 2.9 6.9E+02 0.024 15.8 1.9 27 298-324 13-39 (58)
9 2ks1_B Epidermal growth factor 2.8 1.1E+03 0.037 14.4 3.1 22 102-123 12-33 (44)
10 2lrq_A Protein MRG15, NUA4 com 4.0 3.1E+02 0.01 19.5 0.0 31 301-331 46-77 (85)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.09 E-value=2.9e-06 Score=69.06 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=50.9
Q ss_pred HHHHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhheee
Q 020034 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (332)
Q Consensus 81 ~~g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~~ 154 (332)
+.+++. .++++++..++++.+++.|..+ .++.|++++++++++++|++++++ ++|+.+.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 456666 8899999999999999999888 899999999999999999998764 9999999999988763
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.05 E-value=6.1e-06 Score=64.64 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=59.7
Q ss_pred HHHHHH-HHHHHHHHHHhhccChhhHhHh-hcchhHHHHHHHHHHHhhcccccccccccchhhhhhhhhchhhee
Q 020034 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (332)
Q Consensus 81 ~~g~~g-~~~~~l~~~gl~~~sa~~A~~i-~~~~P~~~~lls~l~~~Ek~~~~~~~s~~~~~gi~l~l~Gv~ll~ 153 (332)
..++.+ ..++.++..++++.+.+.|..+ ..+.|++++++++++++|+++.+| ++|+.+.++|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 455555 7888999999999999999888 799999999999999999998764 999999999998875
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.37 E-value=0.0015 Score=53.00 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHhhcch---hhhh-cchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~---~s~~-~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
++++|.++.+++++.| +.++ ..+.|++++++|++++||+++.
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~ 85 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 6789999999999994 6566 8999999999999999999975
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=94.78 E-value=0.12 Score=39.74 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHhhcch---hhhh-cchHHHHHHHHHHHHhCCCccc
Q 020034 257 SSYWHWVSSWLVHMVP---VENW-TSLCINVQALGHCLLYCHGCRH 298 (332)
Q Consensus 257 t~v~~~l~~~a~~~~~---~s~~-~~l~pv~~~i~~~l~lgE~~~~ 298 (332)
.+++|.++.+++|+.| +.++ ..+.|++++++|++++||+++.
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~ 85 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH
Confidence 5688999999999995 5455 7899999999999999999974
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=12.13 E-value=2.4e+02 Score=16.66 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=15.4
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHH
Q 020034 3 VDMGSMRAALPSVGMVIVLLAQVSNM 28 (332)
Q Consensus 3 ~~~~~~~~~~~~l~ll~~~~~wg~~~ 28 (332)
+|.+..+-..+.++.+..++++++.+
T Consensus 10 VELNRTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 10 VELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceechhhHHHHHHHHHHHHHHhhhhc
Confidence 34444455556666666777776654
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=8.97 E-value=2.3e+02 Score=16.45 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhcccc
Q 020034 115 FTFVLAIIFRLEKLNW 130 (332)
Q Consensus 115 ~~~lls~l~~~Ek~~~ 130 (332)
.-.++..++.|||++.
T Consensus 15 Ygii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 15 YGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3445677788998864
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=3.71 E-value=2.1e+02 Score=19.09 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=13.7
Q ss_pred hcccccccccccchhhhhhhhhch
Q 020034 126 EKLNWENKSSQAKSLGTFASIGGA 149 (332)
Q Consensus 126 Ek~~~~~~~s~~~~~gi~l~l~Gv 149 (332)
.|+++++....++..|+...++|.
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~ 46 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGL 46 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555544445666666666665
No 8
>1kth_A Collagen alpha 3(VI) chain; anisotropic refinement, kunitz inhibitor, extracellular matrix, connective tissue, structural protein; 0.95A {Homo sapiens} SCOP: g.8.1.1 PDB: 1knt_A 1kun_A 2knt_A
Probab=2.92 E-value=6.9e+02 Score=15.81 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=22.4
Q ss_pred ccceeeeeecccCCcCCcceeeeccce
Q 020034 298 HCRRRFLSWKFNWSNDNCSRILCSDVG 324 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (332)
.|+.+...|-.+-+...|+.+.++.=+
T Consensus 13 ~C~~~~~rw~yd~~~~~C~~F~ygGC~ 39 (58)
T 1kth_A 13 TCRDFILKWYYDPNTKSCARFWYGGCG 39 (58)
T ss_dssp BSSCCEEEEEEETTTTEEEEEEECSBS
T ss_pred cCCCCeeeEEEcCCCCccceeecCCcc
Confidence 477888999999888999998887644
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=2.81 E-value=1.1e+03 Score=14.40 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=9.3
Q ss_pred hhhHhHhhcchhHHHHHHHHHH
Q 020034 102 PTLSTAMLNLIPAFTFVLAIIF 123 (332)
Q Consensus 102 a~~A~~i~~~~P~~~~lls~l~ 123 (332)
+-.++++..+.-+.+..+.+++
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~ 33 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGL 33 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 10
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=3.99 E-value=3.1e+02 Score=19.46 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=0.0
Q ss_pred eeeeeecccCCc-CCcceeeeccceeeeeccc
Q 020034 301 RRFLSWKFNWSN-DNCSRILCSDVGKVQRRKD 331 (332)
Q Consensus 301 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 331 (332)
+|+..|.++|++ -.-.+++.+-..-.|.+|+
T Consensus 46 VHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~ 77 (85)
T 2lrq_A 46 IHYAGWSKNWDEWVPENRVLKYNDDNVKRRQE 77 (85)
Done!