Query 020034
Match_columns 332
No_of_seqs 124 out of 1098
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 10:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020034.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020034hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 17.7 59 0.0043 16.3 2.7 17 183-199 3-19 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 12.3 1E+02 0.0074 16.7 2.9 25 4-28 11-35 (37)
3 d1v54k_ f.23.5.1 (K:) Mitochon 4.8 79 0.0057 18.6 0.1 9 191-199 17-25 (49)
4 d1x6aa1 g.39.1.3 (A:8-41) Lim 3.6 1.9E+02 0.014 15.4 1.1 20 313-332 12-31 (34)
5 d1g6xa_ g.8.1.1 (A:) Pancreati 2.4 4E+02 0.029 15.4 1.9 28 298-325 13-40 (58)
6 d1y5ic1 f.21.3.1 (C:1-225) Res 2.1 1E+03 0.076 17.3 4.7 15 72-86 123-137 (225)
7 d1bika2 g.8.1.1 (A:79-134) Bik 2.0 5E+02 0.037 14.9 1.9 28 298-325 12-39 (56)
8 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.0 5.4E+02 0.039 16.1 2.2 14 257-270 52-65 (75)
9 d1ktha_ g.8.1.1 (A:) Collagen 2.0 5.2E+02 0.038 14.9 1.9 28 298-325 13-40 (58)
10 d1aapa_ g.8.1.1 (A:) Alzheimer 1.9 5.5E+02 0.04 14.7 1.9 28 298-325 13-40 (56)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.71 E-value=59 Score=16.27 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 020034 183 LGGFFLAAEAFMNSAWF 199 (332)
Q Consensus 183 ~G~~l~L~aa~~~A~~~ 199 (332)
+|.++.-++.+.||.|-
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57778888888888874
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.34 E-value=1e+02 Score=16.73 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=14.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHH
Q 020034 4 DMGSMRAALPSVGMVIVLLAQVSNM 28 (332)
Q Consensus 4 ~~~~~~~~~~~l~ll~~~~~wg~~~ 28 (332)
|.+..+-..+.+..+..+++|++.+
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHh
Confidence 3333444556666666667776654
No 3
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.81 E-value=79 Score=18.56 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 020034 191 EAFMNSAWF 199 (332)
Q Consensus 191 aa~~~A~~~ 199 (332)
+++|-|.|.
T Consensus 17 a~fc~avW~ 25 (49)
T d1v54k_ 17 ATFCVAVWV 25 (49)
T ss_dssp HHHHHHHHH
T ss_pred cchhhhhhh
Confidence 344444443
No 4
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.62 E-value=1.9e+02 Score=15.45 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=13.5
Q ss_pred CCcceeeeccceeeeecccC
Q 020034 313 DNCSRILCSDVGKVQRRKDH 332 (332)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~ 332 (332)
.+|..++-|-++-.-..|.|
T Consensus 12 ~~C~~~itGpvMvAG~~K~H 31 (34)
T d1x6aa1 12 HGCSLLMTGPFMVAGEFKYH 31 (34)
T ss_dssp TTTCCBCCSCCBCCTTCCBC
T ss_pred hhhHhhcccceeeecccccC
Confidence 57777777777766555554
No 5
>d1g6xa_ g.8.1.1 (A:) Pancreatic trypsin inhibitor, BPTI {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.45 E-value=4e+02 Score=15.45 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=23.6
Q ss_pred ccceeeeeecccCCcCCcceeeecccee
Q 020034 298 HCRRRFLSWKFNWSNDNCSRILCSDVGK 325 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (332)
.|..+...|-.+-+...|+.+..+.-+.
T Consensus 13 ~C~~~~~rw~yd~~~~~C~~F~y~GC~g 40 (58)
T d1g6xa_ 13 ACRARIIRYFYNAKAGLCQTFVYGGCRA 40 (58)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEECSSSC
T ss_pred cCcCceeEEEEECCCCceeeeEcCCccC
Confidence 4777889999999999999999887653
No 6
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=2.09 E-value=1e+03 Score=17.32 Aligned_cols=15 Identities=20% Similarity=-0.024 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHHH
Q 020034 72 TFSILCSFFLLSVFG 86 (332)
Q Consensus 72 ~~~~~~~l~~~g~~g 86 (332)
+.+|+..+.++....
T Consensus 123 ~~~d~~~L~ll~~i~ 137 (225)
T d1y5ic1 123 TGADILILSLLVIQC 137 (225)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 355655554444333
No 7
>d1bika2 g.8.1.1 (A:79-134) Bikunin from inter-alpha-inhibitor complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.04 E-value=5e+02 Score=14.88 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=23.5
Q ss_pred ccceeeeeecccCCcCCcceeeecccee
Q 020034 298 HCRRRFLSWKFNWSNDNCSRILCSDVGK 325 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (332)
.|......|-.+-+...|+.+..+.-+-
T Consensus 12 ~C~~~~~rwyyd~~~~~C~~F~y~GC~G 39 (56)
T d1bika2 12 PCRAFIQLWAFDAVKGKCVLFPYGGCQG 39 (56)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEECSSSC
T ss_pred cCCCceeEEEEECCCCcEeeeEcCCeeC
Confidence 4777888999999999999999887653
No 8
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.03 E-value=5.4e+02 Score=16.10 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHhhc
Q 020034 257 SSYWHWVSSWLVHM 270 (332)
Q Consensus 257 t~v~~~l~~~a~~~ 270 (332)
.+++|..|.|+.++
T Consensus 52 fi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 52 FVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777777653
No 9
>d1ktha_ g.8.1.1 (A:) Collagen type VI (domain C5 from alpha 3 chain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.96 E-value=5.2e+02 Score=14.89 Aligned_cols=28 Identities=25% Similarity=0.688 Sum_probs=23.4
Q ss_pred ccceeeeeecccCCcCCcceeeecccee
Q 020034 298 HCRRRFLSWKFNWSNDNCSRILCSDVGK 325 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (332)
.|......|-.+-+...|+.+..+.-+-
T Consensus 13 ~C~~~~~r~yyd~~~~~C~~F~y~GCgG 40 (58)
T d1ktha_ 13 TCRDFILKWYYDPNTKSCARFWYGGCGG 40 (58)
T ss_dssp BSSCCEEEEEEETTTTEEEEEEECSBSC
T ss_pred cCcCceeEEEEECCCCeeeeeEeCCccC
Confidence 4777888999999899999998887653
No 10
>d1aapa_ g.8.1.1 (A:) Alzheimer's amyloid B-protein precursor, APPI {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.90 E-value=5.5e+02 Score=14.69 Aligned_cols=28 Identities=21% Similarity=0.640 Sum_probs=23.3
Q ss_pred ccceeeeeecccCCcCCcceeeecccee
Q 020034 298 HCRRRFLSWKFNWSNDNCSRILCSDVGK 325 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (332)
.|......|-.+-+...|+.+..+.-+.
T Consensus 13 ~C~~~~~rwyyd~~~~~C~~F~y~GCgG 40 (56)
T d1aapa_ 13 PCRAMISRWYFDVTEGKCAPFFYGGCGG 40 (56)
T ss_dssp SSSCCEEEEEEETTTTEEEEEEECSSSC
T ss_pred CCCCceeEEEEECCCCcEeeeEcCCccC
Confidence 4777888999999999999999887654
Done!