BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020035
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo
sapiens GN=ATPAF2 PE=1 SV=1
Length = 289
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)
Query: 94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
KRFY+ VS + + G+ + LD+R LKTP + +P+ LA A+ EWD QQ D I+
Sbjct: 47 KRFYQNVSITQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKY 103
Query: 154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
+ M L L T+L+ P R K +I +K + D + R L E Q +
Sbjct: 104 YTMHLTTLCNTSLDN-PTQRNKDQLIRAAVKFLDTDTICYRVEEPETLV----ELQRNEW 158
Query: 212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLV 271
DP+++W E +G + +S G + + + + + + L I+ +AA S+V
Sbjct: 159 DPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMV 218
Query: 272 IAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
+ +G+ +L +E+A+ L RLEE+ Q+ KWG +E HD ++ +LR + ++ T+F+ L
Sbjct: 219 LTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHL 275
>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus
musculus GN=Atpaf2 PE=2 SV=1
Length = 289
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%)
Query: 94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
KRFY+ VS + + G+ + LD+R LKTP + +P+ LA A+ EWD QQ D I+
Sbjct: 47 KRFYQNVSISQGE--GGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQ-DTIKF 103
Query: 154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
+ M L L T+L+ P R K +I +K + D + R L E Q +
Sbjct: 104 YTMHLTTLCNTSLDN-PTQRSKDQLIRAAVKFLDTDTICYRVEEPETLV----ELQKNEW 158
Query: 212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLV 271
DP+++W E +G + +S G + + + + + + L I+ + A S++
Sbjct: 159 DPVIEWAEKRYGMEIGSSTSIMGPSIPTQTREVLTSHLSSYNMWALQGIEFVVAQLKSML 218
Query: 272 IAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
+ +G+ +L +E+A+ L RLEE+ Q+ KWG +E HD ++ +LR + ++ T+F+ L
Sbjct: 219 LTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHL 275
>sp|Q1LZ96|ATPF2_BOVIN ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos
taurus GN=ATPAF2 PE=2 SV=1
Length = 289
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 10/237 (4%)
Query: 94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLGLAKAIGAEWDYQQTDGIRP 153
KRFY+ VS + + G+ + LD+R L+TP + +P+ LA A+ EWD QQ D I+
Sbjct: 47 KRFYQNVSISQGE--GGFEINLDHRKLRTPQGKLFTVPSEALAIAVATEWDSQQ-DTIKM 103
Query: 154 FMMPLMKLACTALERVPLTRPK--IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQKI 211
+ M L L T+L+ P R K +I +K + D V R L E Q +
Sbjct: 104 YTMHLTTLCNTSLDN-PTQRDKDQLIRAAVKFLDTDTVCYRVEEPETLV----ELQRNEW 158
Query: 212 DPLLKWVESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDDYELAAIDAIAAAAHSLV 271
DP++ W E +G + +S G + + + + + + L I+ + SLV
Sbjct: 159 DPVISWAEKRYGVEIGSSTSITGPSIPARTREVLVSHLASYNMWALQGIEFVVTQLKSLV 218
Query: 272 IAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISSATVFLGL 328
+ +G+ +L +E+A+ L RLEE+ Q+ KWG +E HD ++ +LR + ++ T+F+ L
Sbjct: 219 LTLGLTDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHL 275
>sp|Q9UT16|ATP12_SCHPO Protein atp12, mitochondrial OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=atp12 PE=3 SV=2
Length = 291
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 19/244 (7%)
Query: 94 KRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLG--LAKAIGAEWDYQQTDGI 151
+RF++ +T+ +G + LD R LK+PS + +K+P LA I EWD + +
Sbjct: 39 RRFWKNTATK-IQNGEV-LIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 152 RPFMMPLMKLACTALERVPLTRPK---IIEHLMKKFNQDLVFCRAPADNDLTSGVHERQV 208
R +P+ L A++ + + + L++ + D + +P + + + E Q
Sbjct: 97 RQHNLPITSLVSRAIDISQFKKEEKELLSTQLIRFLDTDTILIYSP-ETEYEGKLLEEQK 155
Query: 209 QKIDPLLKWVESEFGFKPVVYSSFFGG-------KQEDGLIKTVENLMKKTDDYELAAID 261
+ PL + E++ G V S+ G KQ + + N + + ++LAA +
Sbjct: 156 ENWWPLKETFENKLG----VQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFE 211
Query: 262 AIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDLQVDKWGLVEGGHDIDIADLRVQISS 321
+ S +++ I +G L E+A L LE Q ++WG +E H+ID DL+ +++S
Sbjct: 212 RSVSCCKSFIVSFMILKGYLNSEKAAALTNLELQYQTNRWGSLEDAHEIDNEDLKNKLAS 271
Query: 322 ATVF 325
+ +
Sbjct: 272 SAIL 275
>sp|P22135|ATP12_YEAST Protein ATP12, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ATP12 PE=1 SV=2
Length = 325
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 40/274 (14%)
Query: 90 SIVGKRFYEKVSTREADDGNGWTVMLDYRTLKTPSKRPLKLPTLG--LAKAIGAEWDYQQ 147
S ++F+EKVS + + LD RT+KTP + + LA + EW
Sbjct: 48 SKTSQKFWEKVSLNRDVEKGKIALQLDGRTIKTPLGNGIIVDNAKSLLAYLLKLEWSSLS 107
Query: 148 TDGIRPFMMPLMKLA--CTALERV--PLTRPKII-----------EHLMKKFNQDLVFCR 192
+ I+ +PL L C L+ P P+++ L++ + D +
Sbjct: 108 SLSIKTHSLPLTSLVARCIDLQMTNEPGCDPQLVAKIGGNSDVIKNQLLRYLDTDTLLVF 167
Query: 193 APADNDLTSGVHERQVQKIDPLLKWVE-------SEFGFKPVVYSS----FFGGKQEDGL 241
+P N+ + Q + P++K +E SE + + + G +Q D +
Sbjct: 168 SPM-NEFEGRLRNAQNELYIPIIKGMEEFLRNFSSESNIRLQILDADIHGLRGNQQSDIV 226
Query: 242 IKTVENLMKKTDDYELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIR---------- 291
+ M ++LA ++ S + + + K I ++
Sbjct: 227 KNAAKKYMSSLSPWDLAILEKTVLTTKSFICGVLLLENKKDTANLIPALKTDMDNIVRAA 286
Query: 292 -LEEDLQVDKWGLVEGGHDIDIADLRVQISSATV 324
LE QV+KWG VE HD+D D+R +I +A +
Sbjct: 287 TLETIFQVEKWGEVEDTHDVDKRDIRRKIHTAAI 320
>sp|P75239|RL7_MYCPN 50S ribosomal protein L7/L12 OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=rplL PE=3 SV=1
Length = 122
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 197 NDLTSGVHERQVQKIDPLLKWVESEFGFK--PVVYSSFFGGKQEDGLIKTVENLMKKTDD 254
N L + E + +ID ++K VE FG PVV + GG QE TV + TD+
Sbjct: 7 NQLIESLKEMTIMEIDEIIKAVEEAFGVSATPVVAAGAVGGTQEAASEVTV-KVTGYTDN 65
Query: 255 YELAAIDAIAAAAHSLVIAIGIFRGKLQIE 284
+LA + + + +G+ K +E
Sbjct: 66 AKLAVLK-----LYREIAGVGLMEAKTAVE 90
>sp|Q01728|NAC1_RAT Sodium/calcium exchanger 1 OS=Rattus norvegicus GN=Slc8a1 PE=2 SV=3
Length = 971
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 10 LQSIRNPNAISSFTTFRTRHLCSVATVHQSPQ------YDDDPTSSFTFSSPSDKINESI 63
L ++R + +S + H+ ++A + SP +DDD FTF P ++ESI
Sbjct: 492 LSNVRVSSEVSEDGILDSNHVSAIACL-GSPNTATITIFDDDHAGIFTFEEPVTHVSESI 550
Query: 64 YIKGRKQETASSSSSSVTMPMSFMTGSIVG 93
I K S + +V +P + G+ G
Sbjct: 551 GIMEVKVLRTSGARGNVIIPYKTIEGTARG 580
>sp|P70414|NAC1_MOUSE Sodium/calcium exchanger 1 OS=Mus musculus GN=Slc8a1 PE=1 SV=1
Length = 970
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 10 LQSIRNPNAISSFTTFRTRHLCSVATVHQSPQ------YDDDPTSSFTFSSPSDKINESI 63
L ++R + +S + H S+A + SP +DDD FTF P ++ESI
Sbjct: 492 LSNVRVSSDVSEDGILESNHASSIACL-GSPSTATITIFDDDHAGIFTFEEPVTHVSESI 550
Query: 64 YIKGRKQETASSSSSSVTMPMSFMTGSIVG 93
I K S + +V +P + G+ G
Sbjct: 551 GIMEVKVLRTSGARGNVIIPYKTIEGTARG 580
>sp|Q13IW3|ATPB3_BURXL ATP synthase subunit beta 3 OS=Burkholderia xenovorans (strain
LB400) GN=atpD3 PE=3 SV=1
Length = 493
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 168 RVPLTRPKIIEHLMKKFNQDLVFCRAPADNDLTSGVHERQVQ---KIDPLLKWVESEFGF 224
RVPLT + E+ + +Q+++ DN R VQ ++ LL + S G+
Sbjct: 239 RVPLTALTVAEYFRDERHQNVLLL---MDNVF------RFVQAGAEVSGLLGRLPSRVGY 289
Query: 225 KPVVYSSFFGGKQE-----DGLIKTVENLMKKTDDYELAAIDAIAAAAHSLVI 272
+P + + G ++ D + +E + DD+ A+ AIAA S+V+
Sbjct: 290 QPTLATEVAGLQERIVSVGDVSVTAIEAVYVPADDFTDPAVTAIAAHVDSMVV 342
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3
Length = 923
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 201 SGVHERQVQKIDPLL-KW-----VESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDD 254
+G E+ + K+ L W ++S F + + F Q+D KT NL + D
Sbjct: 191 AGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQD---KTSSNLHEAASD 247
Query: 255 YELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDL 296
+A+ AI +L +A+ +F+G L +E A + EDL
Sbjct: 248 CVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1
Length = 923
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 201 SGVHERQVQKIDPLL-KW-----VESEFGFKPVVYSSFFGGKQEDGLIKTVENLMKKTDD 254
+G E+ + K+ L W ++S F + + F Q+D KT NL + D
Sbjct: 191 AGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQD---KTSSNLHEAASD 247
Query: 255 YELAAIDAIAAAAHSLVIAIGIFRGKLQIEEAIELIRLEEDL 296
+A+ AI +L +A+ +F+G L +E A + EDL
Sbjct: 248 CVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289
>sp|P23685|NAC1_CANFA Sodium/calcium exchanger 1 OS=Canis familiaris GN=SLC8A1 PE=1 SV=1
Length = 970
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 42 YDDDPTSSFTFSSPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVG 93
+DDD FTF P ++ESI I K S + +V +P + G+ G
Sbjct: 529 FDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARG 580
>sp|P48766|NAC1_CAVPO Sodium/calcium exchanger 1 OS=Cavia porcellus GN=SLC8A1 PE=2 SV=1
Length = 970
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 42 YDDDPTSSFTFSSPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVG 93
+DDD FTF P ++ESI I K S + +V +P + G+ G
Sbjct: 529 FDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARG 580
>sp|P48767|NAC1_FELCA Sodium/calcium exchanger 1 OS=Felis catus GN=SLC8A1 PE=2 SV=1
Length = 970
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 42 YDDDPTSSFTFSSPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVG 93
+DDD FTF P ++ESI I K S + +V +P + G+ G
Sbjct: 529 FDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARG 580
>sp|P32418|NAC1_HUMAN Sodium/calcium exchanger 1 OS=Homo sapiens GN=SLC8A1 PE=1 SV=3
Length = 973
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 42 YDDDPTSSFTFSSPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVG 93
+DDD FTF P ++ESI I K S + +V +P + G+ G
Sbjct: 532 FDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARG 583
>sp|P48765|NAC1_BOVIN Sodium/calcium exchanger 1 OS=Bos taurus GN=SLC8A1 PE=1 SV=1
Length = 970
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 42 YDDDPTSSFTFSSPSDKINESIYIKGRKQETASSSSSSVTMPMSFMTGSIVG 93
+DDD FTF P ++ESI I K S + +V +P + G+ G
Sbjct: 529 FDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARG 580
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,684,227
Number of Sequences: 539616
Number of extensions: 5107770
Number of successful extensions: 13083
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13027
Number of HSP's gapped (non-prelim): 36
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)