RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020036
(332 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 581 bits (1499), Expect = 0.0
Identities = 243/334 (72%), Positives = 289/334 (86%), Gaps = 2/334 (0%)
Query: 1 MDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAY 59
+DWDNLGFGL P DYMY MKC+ D F KG L R+G IELSPS+GVLNYGQGLFEG+KAY
Sbjct: 70 IDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAY 129
Query: 60 RKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLY 119
RKEDG ++LFRP++NAIR++ GAERMCMP+P+++QF++AVK+T LANKRWVPPPGKGSLY
Sbjct: 130 RKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLY 189
Query: 120 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179
IRPLL+GSG +LGLAPAPEYTFL++ SPVGNYFKEG+AP+NL VE+EFHRATPGG GGVK
Sbjct: 190 IRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVK 249
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTIL 239
I NYA VLKA S AK +G+SDVLYLD V+KK LEEVSSCNIFI+K N+ISTPA GTIL
Sbjct: 250 TIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTIL 309
Query: 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEF- 298
GITRKSII++A GFQVEER + VDELLEADEVFCTGTAVVV+PVGSITY+GKR+ +
Sbjct: 310 PGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYG 369
Query: 299 KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
+ G +VS++LY+ L +Q GLI+DN WTVE++
Sbjct: 370 EGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS 403
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 528 bits (1361), Expect = 0.0
Identities = 251/333 (75%), Positives = 297/333 (89%), Gaps = 1/333 (0%)
Query: 1 MDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAY 59
+DWDNLGFGL PADYMY MKCS F +G LS YG I+LSPS+GVLNYGQ ++EG KAY
Sbjct: 56 LDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAY 115
Query: 60 RKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLY 119
RKE+G+L+LFRPD NAIR++ GAERM MPSPS+DQF++AVKQTALANKRWVPP GKG+LY
Sbjct: 116 RKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLY 175
Query: 120 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179
IRPLL+GSGPILGL PAPEYTF+V+ASPVGNYFKEG+A LNLYVE+E+ RA PGGAGGVK
Sbjct: 176 IRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVK 235
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTIL 239
+I+NYAPVLKA+SRAK+RGFSDVLYLDSV KK LEE SSCN+F++KG ISTPAT+GTIL
Sbjct: 236 SITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTIL 295
Query: 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFK 299
GITRKS++EIASD G+QV E+A+ VDE+++ADEVFCTGTAVVVAPVG+ITY+ KR+E+K
Sbjct: 296 EGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYK 355
Query: 300 TGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
TG +SV ++L S LVGIQTGLI+DNKGW +IN
Sbjct: 356 TGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 497 bits (1282), Expect = e-178
Identities = 205/331 (61%), Positives = 269/331 (81%), Gaps = 2/331 (0%)
Query: 3 WDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 61
W+ LGF L P DYMY KC + F +G++ YG I +SP +G+LNYGQGLFEG+KAYR
Sbjct: 22 WEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRT 81
Query: 62 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 121
EDG++ LFRPDQNA+R+QTGA+R+CM PS++QF++AVKQT LANK+WVPPPGKG+LYIR
Sbjct: 82 EDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIR 141
Query: 122 PLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 181
PLL+GSG +LG+APAPEYTFL++ASPVGNY K + LNL V+ + RA GG GGVK+
Sbjct: 142 PLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKAS-SGLNLKVDHKHRRAHSGGTGGVKSC 200
Query: 182 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAG 241
+NY+PV+K++ AK+ GFSDVL+LD+ KN+EE+S+CNIFILKGNI+STP TSGTIL G
Sbjct: 201 TNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTILPG 260
Query: 242 ITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTG 301
+TRKSI E+A D G+QVEER + VDELLEA+EVFCTGTAVVV V ++T+ K+++++TG
Sbjct: 261 VTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTG 320
Query: 302 AQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 332
+++S +L+ L IQ G+++D KGW VEI+
Sbjct: 321 EEALSTKLHLILTNIQMGVVEDKKGWMVEID 351
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 459 bits (1181), Expect = e-163
Identities = 223/332 (67%), Positives = 268/332 (80%), Gaps = 1/332 (0%)
Query: 1 MDWDNLGFGLTPADYMYTMK-CSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAY 59
+DWD LGF L D+M+ K C + FE+G LSRYG IEL+P++G+LNYGQGL EGMKAY
Sbjct: 52 VDWDKLGFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAY 111
Query: 60 RKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLY 119
R EDG+++LFRP+ NA+R++ GAERMCM SPS+ QFI+ VKQT LAN+RWVPPPGKGSLY
Sbjct: 112 RGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLY 171
Query: 120 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 179
+RPLL GSG LG+A APEYTFLVF SPV NYFKEG A LNLYVE+ RA GG GGVK
Sbjct: 172 LRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVK 231
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTIL 239
AISNY PVL+ + RAK+RGFSDVLYLD+ KN+EEVS+ NIF++KGNII TPATSGTIL
Sbjct: 232 AISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTIL 291
Query: 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFK 299
GITRKSIIEIA D G++VEER +PV+EL EA+EVFCTGTA VA VGSIT++ R E+K
Sbjct: 292 GGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYK 351
Query: 300 TGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 331
G V+++L S L+GIQTG I+D K W ++I
Sbjct: 352 VGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI 383
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 444 bits (1144), Expect = e-157
Identities = 156/339 (46%), Positives = 209/339 (61%), Gaps = 10/339 (2%)
Query: 2 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 61
DW NLGFG D+M + + + RL YG +EL P++ VL+YGQ +FEG+KAYR
Sbjct: 18 DWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRH 77
Query: 62 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLYI 120
+DG +VLFRPD NA RLQ A+R+ MP + F++AVKQ A++ WVPP G+G SLY+
Sbjct: 78 KDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYL 137
Query: 121 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 180
RP ++ + P LG+ PA EY F V ASPVG YFK G+ P++++V DE+ RA PGG G K
Sbjct: 138 RPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKV 197
Query: 181 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPATSGTIL 239
NYA L A + AK +G VLYLD+V +EEV N F I K + TP SG+IL
Sbjct: 198 GGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTV-TPPLSGSIL 256
Query: 240 AGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRG 293
GITR S++++A D G VEER + +DE E F GTA V+ P+G I Y+
Sbjct: 257 PGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKD 316
Query: 294 KRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 331
K G V+++LY L GIQ G ++D GW V++
Sbjct: 317 KEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKV 355
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 368 bits (947), Expect = e-128
Identities = 140/282 (49%), Positives = 176/282 (62%), Gaps = 3/282 (1%)
Query: 38 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 97
L P++ L+YGQ +FEG+KAYR DG++VLFRPD+NA RL A R+ +P S+++FID
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 98 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLA 157
A+K+ + WVP G SLYIRP + G+ P LG++PA EY F VFASPVG YFK G
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEK 120
Query: 158 PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVS 217
++ V F RA PGG G KA NYA L A A +G+ L+LD + EV
Sbjct: 121 GVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG-AHGYVAEVG 178
Query: 218 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 277
+ NIF +K + TP G+IL GITR SI+E+A D G +VEER I DEL EADEVF T
Sbjct: 179 TMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFAT 238
Query: 278 GTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 319
GTA VV PVG I YRGK V+++LY L IQ G
Sbjct: 239 GTAAVVTPVGEIDYRGKEPGE-GEVGPVTKKLYDLLTDIQYG 279
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 340 bits (873), Expect = e-117
Identities = 154/310 (49%), Positives = 198/310 (63%), Gaps = 7/310 (2%)
Query: 29 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 88
GRL+ YG + L P S VL+YGQ FEG+KAYR DG +VLFRPD NA RL+ A R+ MP
Sbjct: 4 GRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMP 63
Query: 89 SPSIDQFIDAVKQTALANKRWVPPPGKG-SLYIRPLLVGSGPILGLAPAPEYTFLVFASP 147
+ F++A++Q ANK WVPP G G SLY+RP ++G+ P LG+ PAPEY F VFASP
Sbjct: 64 ELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASP 123
Query: 148 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 207
VG YFK GLAP++++V E+ RA PGG G VK NYA L A ++A +G V+YLD
Sbjct: 124 VGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP 183
Query: 208 VNKKNLEEVSSCNIF-ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVD 266
V +EEV + N F I + TP SG+IL GITR S++++A D G +VEER I +D
Sbjct: 184 VEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDID 243
Query: 267 ELLEADE----VFCTGTAVVVAPVGSITYRGKRIEFKTGAQS-VSRELYSTLVGIQTGLI 321
EL E VF GTA V+ PVG I + GK + F +G V++ LY L IQ G
Sbjct: 244 ELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDF 303
Query: 322 KDNKGWTVEI 331
+D GW VE+
Sbjct: 304 EDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 259 bits (664), Expect = 4e-86
Identities = 111/272 (40%), Positives = 145/272 (53%), Gaps = 21/272 (7%)
Query: 45 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103
L+YG G+FEG++A + LFR D++ RL A+R+ +P P ++ +A+K+
Sbjct: 3 GLHYGDGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELV 57
Query: 104 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNL 161
AN SLYIRPLL LG+AP P E TF+VFASPVG Y K G + L
Sbjct: 58 AANN-------GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRL 110
Query: 162 YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 221
+ RA PGG G K + A A G + L LD + E S+ N+
Sbjct: 111 ITSPDRRRAAPGGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNV 167
Query: 222 FILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAV 281
FI+K + TP G IL GITR S+IE+A + G +VEER I +DEL ADEVF TGTA
Sbjct: 168 FIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAA 227
Query: 282 VVAPVGSITYRGKRIEFKTGAQSVSRELYSTL 313
V PV I RG + K G V+R+L L
Sbjct: 228 EVTPVTEIDGRGI-GDGKPG--PVTRKLRELL 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 236 bits (604), Expect = 9e-77
Identities = 112/297 (37%), Positives = 154/297 (51%), Gaps = 22/297 (7%)
Query: 28 KGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCM 87
G L +LS L+YG G+FE ++AY + LFR D++ RL+ A+R+ +
Sbjct: 7 NGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGK-----LFRLDEHLARLKRSAKRLGL 61
Query: 88 PSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 147
P P ++ I+ + Q LA VP LYIRPL+ G G LG+ A E T +V ASP
Sbjct: 62 PRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDATEPTLIVAASP 116
Query: 148 VGNYFKEGLA--PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 205
VG Y K G + L + R P G G K NY + A AK G + L L
Sbjct: 117 VGAYLKGGRLEKGVVLVISSPV-RRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLL 175
Query: 206 DSVNKKNLEEVSSCNIFILKGN-IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIP 264
D + E + N+F +KG+ ++ TP SG IL GITR S++E+A + G VEER I
Sbjct: 176 DE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPIT 233
Query: 265 VDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLI 321
+++L +ADEVF T TA V PVG I R + G V+++L L IQ G I
Sbjct: 234 LEDLKQADEVFLTNTAAGVTPVGLIDGR----VGQPG--PVTKKLRELLTDIQYGEI 284
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 144 bits (367), Expect = 5e-41
Identities = 98/300 (32%), Positives = 140/300 (46%), Gaps = 45/300 (15%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104
L+YG G+FEG++AY G + FR ++ RL A+ + M P S+D+ ++A ++
Sbjct: 30 LHYGTGVFEGIRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88
Query: 105 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT---FLVFASPVGNYF-KEGLAP- 158
N S YIRPL+ VG GL P + A P G Y +E L
Sbjct: 89 KNNL-------KSAYIRPLVFVGDE---GLGVRPHGLPTDVAIAAWPWGAYLGEEALEKG 138
Query: 159 LNLYVEDEFHRA----TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 214
+ + V + R P A KA NY + A + A+ G+ + L LD
Sbjct: 139 IRVKVS-SWTRHAPNSIPTRA---KASGNYLNSILAKTEARRNGYDEALLLDVEGY---- 190
Query: 215 EVSSC---NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA 271
VS NIFI++ ++ TP + +IL GITR ++I +A D G +V ER I DEL A
Sbjct: 191 -VSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIA 249
Query: 272 DEVFCTGTAVVVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 327
DEVF TGTA V P+ + R GKR G ++ +L S I G + W
Sbjct: 250 DEVFFTGTAAEVTPIREVDGRQIGNGKR-----G--PITEKLQSAYFDIVRGRTEKYAHW 302
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 143 bits (363), Expect = 1e-40
Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 28/293 (9%)
Query: 45 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 103
L+YG G+FEG++AY + G +FR ++ RL A+ M P S ++ ++A ++T
Sbjct: 20 ALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETL 78
Query: 104 LANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGLAPLN 160
N S YIRPL+ G G LGL P Y ++ A P G Y E
Sbjct: 79 RKN-------NLRSAYIRPLVFRGDGD-LGLNPRAGYKPDVIIAAWPWGAYLGEEALEKG 130
Query: 161 LYVE-DEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
+ + + R P KA NY L A S A+ G+ + + LD + + E S
Sbjct: 131 IDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSG 188
Query: 219 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 278
NIFI+K ++ TP + +IL GITR ++I +A + G +V E+ I +EL ADE F TG
Sbjct: 189 ENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTG 248
Query: 279 TAVVVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 327
TA + P+ + R G+R V+++L + TG +D GW
Sbjct: 249 TAAEITPIREVDGRKIGNGRR-------GPVTKKLQEAFFDLVTGGTEDYWGW 294
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 132 bits (335), Expect = 3e-37
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 69 FRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 128
F D++ RL+ A+ + SI+ +++ AN GS +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 129 PILGLAPAPEYTFLVFASPVGNYFK-EGLAPLN-LYVEDEFHRATPGGAGGVKAISNYAP 186
GL+P ++ + L L + G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGH---KTTNYLDN 111
Query: 187 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKS 246
VL A+ A+ GF D L LD N+ E S+ NIFI+KG + TP IL GITR++
Sbjct: 112 VLAALRAAERAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQA 169
Query: 247 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 289
++++A + G +VEER + + +L EADE F T + V PV SI
Sbjct: 170 LLDLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 120 bits (302), Expect = 6e-32
Identities = 70/257 (27%), Positives = 112/257 (43%), Gaps = 45/257 (17%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
+G G++E ++ Y +G F D++ RL A+ + + P + ++ + +++ N
Sbjct: 23 FGDGVYEVIRVY---NG--KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN 77
Query: 107 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDE 166
+ G+G +YI+ + G GP P +V + L P L
Sbjct: 78 EG-----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIITQPLP-----LPPAELL---- 122
Query: 167 FHRATPGGAGGVKAIS--------------NYAPVLKAISRAKNRGFSDVLYLDSVNKKN 212
GV+ I+ N + A AK G + + LD+
Sbjct: 123 --------EKGVRVITVPDIRWLRCDIKSLNLLNNVLAKQEAKEAGADEAILLDADG--L 172
Query: 213 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 272
+ E SS N+FI+K ++ TP IL GITR ++IE+A + G VEER ++EL AD
Sbjct: 173 VTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTAD 232
Query: 273 EVFCTGTAVVVAPVGSI 289
EVF T T V PV I
Sbjct: 233 EVFLTSTTAEVMPVVEI 249
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 111 bits (279), Expect = 8e-29
Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 32/250 (12%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANK 107
YG G+FE M+A DG+L L D + RL+ A R+ +P P + + A++ AN
Sbjct: 6 YGDGVFETMRAL---DGRLFLL--DAHLARLERSARRLGIPEPDLPRLRAALESLLAAN- 59
Query: 108 RWVPPPGKGSLYIRPLLV-GSGPILGLAPA--PEYTFLVFASPVGNYFKE-----GLAPL 159
+G IR +L G G G AP+ P V P+ +++ P+
Sbjct: 60 ----DIDEG--RIRLILSRGPGG-RGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPV 112
Query: 160 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 219
L G+K + NY + A A++RG + L+LD+ + E ++
Sbjct: 113 RL--------GEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDTDG--RVIEGTAS 161
Query: 220 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 279
N+F +K + TP+ LAGITR+ +IE+A+ G+ V+ER + +++LL ADE F T +
Sbjct: 162 NLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNS 221
Query: 280 AVVVAPVGSI 289
+ VAPV +I
Sbjct: 222 LLGVAPVTAI 231
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 105 bits (264), Expect = 2e-26
Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 113 PGKGSLYIRPLLVG-SGPILGLAPAPEYT---FLVFASPVGNY--FKEGLAPLNLYVEDE 166
+LYIRP+ G G+AP PE T + +P+ F L+P
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLSP-------- 138
Query: 167 FHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 225
F R T A KA Y +A+ A++RGF + L LD + N+ E ++ N+F++K
Sbjct: 139 FRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG--NVAETATSNVFMVK 196
Query: 226 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAP 285
++ TP +GT L GITR+ +I + + G V E + ++ LEADEVF TG V P
Sbjct: 197 DGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVP 256
Query: 286 V 286
V
Sbjct: 257 V 257
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 101 bits (255), Expect = 5e-25
Identities = 89/283 (31%), Positives = 135/283 (47%), Gaps = 40/283 (14%)
Query: 46 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 104
L+Y +FEG +AY G++ F+ +++ RL+ AE + P S+ + IDA K+ L
Sbjct: 32 LHYASSVFEGERAY---GGKI--FKLREHSERLRRSAELLDFEIPYSVAE-IDAAKKETL 85
Query: 105 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-PVGNYF----KEGLAPL 159
A Y+RP+ ++G++ L A+ +YF K L
Sbjct: 86 AANGLT------DAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRL 139
Query: 160 NLYVEDEFHRATPGGA-GGVKAISNYAPVLKAIS--RAKNRGFSDVLYLDSVNKKNLEEV 216
++ ++ R P A KA Y ++ IS A+ +G++D L LD + + E
Sbjct: 140 DI---AKWRRPDPETAPSAAKAAGLY--MICTISKHAAEAKGYADALMLDY--RGYVAEA 192
Query: 217 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFC 276
+ NIF +K +I TP T L GITR+++IE+A G +V ER I +EL E F
Sbjct: 193 TGANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFL 251
Query: 277 TGTAVVVAPVGSI-TYRGKRIEFKTGAQSVSREL---YSTLVG 315
TGTA V PV I YR F GA ++R+L Y LV
Sbjct: 252 TGTAAEVTPVSEIGEYR-----FTPGA--ITRDLMDDYEALVR 287
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 98.8 bits (247), Expect = 6e-24
Identities = 82/271 (30%), Positives = 116/271 (42%), Gaps = 75/271 (27%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
YG G+FEG++AY +G +FR ++ RL A+ + + P S ++ + V +T N
Sbjct: 28 YGDGVFEGIRAY---NG--RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKN 82
Query: 107 KRWVPPPGKGSLYIRPLL---VGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNL 161
YIR ++ VG LGL P P+ T + A P+G Y E L
Sbjct: 83 -------NLRDAYIRLVVSRGVGD---LGLDPRKCPKPTVVCIAEPIGLYPGE------L 126
Query: 162 YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVL--------YLDSV----- 208
Y G LK I+ + R D L YL+++
Sbjct: 127 Y--------EKG--------------LKVITVSTRRNRPDALSPQVKSLNYLNNILAKIE 164
Query: 209 -NKKNLEE---------VSSC---NIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 255
N ++E V+ NIFI+K + TP T L GITR ++IEIA + G
Sbjct: 165 ANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELG 224
Query: 256 FQVEERAIPVDELLEADEVFCTGTAVVVAPV 286
V E + +L ADEVF TGTA V PV
Sbjct: 225 IPVREELFTLHDLYTADEVFLTGTAAEVIPV 255
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 82.3 bits (204), Expect = 5e-18
Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 38/254 (14%)
Query: 49 GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKR 108
G G+FE + DG+ + RL A + +P P +D++ AV LA +
Sbjct: 38 GDGVFETLLVR---DGRPCNLEA--HLERLARSAALLDLPEPDLDRWRRAV---ELAIEE 89
Query: 109 WVPPPGKGSL---YIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK----EGLAPLNL 161
W P + +L Y R G P T V SPV EG++ + L
Sbjct: 90 WRAPEDEAALRLVYSRGRESGGAP----------TAWVTVSPVPERVARARREGVSVITL 139
Query: 162 ---YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS---VNKKNLEE 215
Y D RA P G K +S YA + A+ A RG DV++ + V LE
Sbjct: 140 DRGYPSDAAERA-PWLLAGAKTLS-YAVNMAALRYAARRGADDVIFTSTDGYV----LEG 193
Query: 216 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVF 275
+S + I + + TP IL G T+ ++ E+A + G+ E RA+ +L AD V+
Sbjct: 194 PTS-TVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVW 252
Query: 276 CTGTAVVVAPVGSI 289
+ + A V ++
Sbjct: 253 LVSSVRLAARVHTL 266
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 78.3 bits (194), Expect = 1e-16
Identities = 76/305 (24%), Positives = 113/305 (37%), Gaps = 77/305 (25%)
Query: 38 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 97
LS S YG G F R DGQ+ L ++ RLQ ER+ +P Q
Sbjct: 11 SLSVSDRSTQYGDGCFTTA---RVRDGQVSLL--SRHLQRLQDACERLAIPLDDWAQLEQ 65
Query: 98 AVKQTALANKRWVPPPGKGSLYI---RPLLVGSG-----------P--ILGLAPAPEYTF 141
+KQ A G L + R GSG P IL ++P P +
Sbjct: 66 EMKQLAAEL-------ENGVLKVIISR----GSGGRGYSPAGCAAPTRILSVSPYPAHYS 114
Query: 142 L-------VFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRA 194
+ P + G PL G+K ++ VL +
Sbjct: 115 RWREQGITLALCPT----RLGRNPL---------------LAGIKHLNRLEQVL-IRAEL 154
Query: 195 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 254
+ + L LDS + E + N+F KG ++ TP +AG+ R+ I+E+ +
Sbjct: 155 EQTEADEALVLDSEG--WVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQS 212
Query: 255 GFQVEERAIPVDELLEADEVFCTGTAVVVAPV---GSITYRGKRIEFKTGAQSVSRELYS 311
G+ V E ++ELL+ADEVF + + V PV G +Y S L
Sbjct: 213 GYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-------------SGTLTR 259
Query: 312 TLVGI 316
L +
Sbjct: 260 YLQPL 264
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 74.2 bits (183), Expect = 3e-15
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 196 NRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 255
N + L LD+ N+ E ++ NIF KGN + TP S +AG+ R+ ++ + G
Sbjct: 154 NSEADEALVLDTDG--NVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALG 211
Query: 256 FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 289
+++EE ++ELL ADEVF T + + V PV +I
Sbjct: 212 YEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
Score = 38.3 bits (90), Expect = 0.003
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 38 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 97
++S S L YG G F K +G++ L D + RLQ A R+ +P P D +
Sbjct: 9 QISVSDRGLQYGDGCFTTAKVR---NGKIELL--DLHLERLQDAAARLGIPLPDWDALRE 63
Query: 98 AVKQTAL 104
+ Q A
Sbjct: 64 EMAQLAA 70
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 71.7 bits (176), Expect = 2e-14
Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 48/277 (17%)
Query: 29 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 88
G+L + ++ +G G++E ++ Y +G LF +++ RL A ++ +
Sbjct: 6 GQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NG--KLFTVNEHIDRLYASAAKIRID 60
Query: 89 SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 147
P + ++ + + N G +Y + + G P PA ++ A
Sbjct: 61 IPYTKEELHQLLHELVEKNNL-----NTGHVYFQ-VTRGVAPRNHQFPAGTVKPVITA-- 112
Query: 148 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS--------------NYAPVLKAISR 193
Y KE P E+ GVKAI+ N + A
Sbjct: 113 ---YTKEVPRP-----EENL-------EKGVKAITVEDIRWLRCDIKSLNLLGNVLAKQE 157
Query: 194 AKNRG-FSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIAS 252
A +G + +L+ + E SS N++ +K ++ T + IL GITR I+ A
Sbjct: 158 AHEKGAYEAILHRGGT----VTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAE 213
Query: 253 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 289
+ G V+E +ELL ADEVF + T + PV I
Sbjct: 214 ENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEI 250
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 71.5 bits (175), Expect = 3e-14
Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 29/254 (11%)
Query: 48 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 106
YG G+FEG+++Y +F ++ RL A+ + + P ++D+ +AV QT N
Sbjct: 29 YGDGVFEGIRSYGGN-----VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN 83
Query: 107 KRWVPPPGKGSLYIRPLLVGSGP-ILGLAP--APEYTFLVFASPVG----NYFKEGLAPL 159
YIR L+V G LGL P + + ++ A + ++ GL+ +
Sbjct: 84 -------EYADAYIR-LIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVV 135
Query: 160 NLYVEDEFHRATPGGAG-GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
++ R TP +K+++ VL I A G + L L+ + + E S
Sbjct: 136 SVASR----RNTPDALDPRIKSMNYLNNVLVKI-EAAQAGVLEALMLN--QQGYVCEGSG 188
Query: 219 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 278
N+F++K + TP + L GITR S+IE+ EER ++ ADEVF TG
Sbjct: 189 DNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTG 248
Query: 279 TAVVVAPVGSITYR 292
TA + PV + R
Sbjct: 249 TAAELIPVVKVDSR 262
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 69.6 bits (171), Expect = 1e-13
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 215 EVSSCNIFILK--GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 272
E +S N +I+ G +++ PA + IL GITR ++I++A + G +VEER + E A
Sbjct: 181 EGASSNAWIVTKDGKLVTRPADNF-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAR 239
Query: 273 EVFCTGTAVVVAPVGSI 289
E F T + V PV I
Sbjct: 240 EAFITAASSFVFPVVQI 256
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 67.3 bits (165), Expect = 9e-13
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 220 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 279
N+F +KG+I+ TP+ IL GITR +I++ + G +V+E +ELL ADEVF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 280 AVVVAP---VGSITYRGKR 295
+ P + + GK
Sbjct: 242 IQEIVPLTRIEERDFPGKV 260
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 51.2 bits (122), Expect = 2e-07
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 177 GVKAIS--------------NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 222
GV+AIS N P + A ++A+ +G + L+ V + E S N F
Sbjct: 134 GVRAISEPDTRWLRCDIKSLNLLPNILAATKAERKGCKEALF---VRNGTVTEGSHSNFF 190
Query: 223 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 282
++K + T + IL GI R+ ++ +A V+E V ++ +ADE F TGT +
Sbjct: 191 LIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIE 250
Query: 283 VAPV 286
+ P+
Sbjct: 251 ILPM 254
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 37.7 bits (88), Expect = 0.006
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 183 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI-FILKGNIISTPATSGTILAG 241
NY P + A+ RG ++LD + + E + N+ F+ + P IL+G
Sbjct: 188 NYLPNALSQMEAEERGAFAGIWLD--EEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSG 244
Query: 242 ITRKSIIEIA-----SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 286
T + ++E+A V++R I V+E ADE+ G+ V V P+
Sbjct: 245 CTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 298
Score = 31.8 bits (73), Expect = 0.40
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 233 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 267
AT G IL + + AS G ++E+ IP+ +
Sbjct: 216 ATEGGILGALWE---VAEASGVGLRIEKDKIPIRQ 247
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 31.1 bits (71), Expect = 0.52
Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 36/212 (16%)
Query: 68 LFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 127
R D++ RL+ A + P AV+ P L +R L
Sbjct: 18 FPRLDRHLARLERSARALGFPCD-----PAAVRAKLAEAVAGAQGP----LRLRLTLARD 68
Query: 128 GPI-LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAP 186
G + + AP P P ++ +A L D R K + A
Sbjct: 69 GRLTVETAPLP-------PLPPDTVWRVAIARTRLDSADPLLR--------YKT-TRRAA 112
Query: 187 VLKAISRAKNRGFSDVLYLDSVNKK-NLEEVSSCNIFI-LKGNIISTPATSGTILAGITR 244
A + +V+ L N++ + E + N+F+ G +++TP S +L G+ R
Sbjct: 113 YDAARAELPPAEADEVILL---NERGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLR 169
Query: 245 KSIIEIASDCGFQVEERAIPVDELLEADEVFC 276
++ + E + VD+L A ++
Sbjct: 170 AELL-----DAGRAREAVLTVDDLKSARAIWV 196
>gnl|CDD|212579 cd11706, DHR2_DOCK2, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 2. Dock2 is a hematopoietic
cell-specific, class A DOCK and is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It plays an important role in lymphocyte migration
and activation, T-cell differentiation, neutrophil
chemotaxis, and type I interferon induction. DOCK
proteins are divided into four classes (A-D) based on
sequence similarity and domain architecture; class A
includes Dock1, 2 and 5. All DOCKs contain two homology
domains: the DHR-1 (Dock homology region-1), also called
CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and
DHR-2 (also called CZH2 or Docker). The DHR-1 domain
binds phosphatidylinositol-3,4,5-triphosphate. This
alignment model represents the DHR-2 domain of Dock2,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock2, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 421
Score = 30.0 bits (67), Expect = 1.7
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 48 YGQG----------LFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 94
YGQG ++ G + R+ED Q+ L NA +L T + P I
Sbjct: 149 YGQGFPSFLRNKVFIYRGKEYERREDFQMQLMSQFPNAEKLNTTS----APGDDIKN 201
>gnl|CDD|215567 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 29.4 bits (66), Expect = 2.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 4 DNLGFGLTP--ADYMYTMKCSNDYFEKGRLSRYG 35
D LGFG +P AD +YT++ + E+ L RY
Sbjct: 239 DLLGFGRSPKPADSLYTLREHLEMIERSVLERYK 272
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 28.4 bits (64), Expect = 3.0
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 197 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS-GTILAG---ITRKSIIEIAS 252
+ + D L L + K + +F+ K +++ P L G I RK+
Sbjct: 23 QSYLDPLLLSLLLPKRGRPL----VFVAKDELLNLPLLGWLMRLLGCIFIDRKNA----- 73
Query: 253 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 312
++ A ++ L+E + G V++ P G+ + G+ + FK GA ++RE
Sbjct: 74 ------KDAANTLEYLVE---LLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVP 124
Query: 313 LV 314
+V
Sbjct: 125 IV 126
>gnl|CDD|226222 COG3698, COG3698, Predicted periplasmic protein [Function unknown].
Length = 250
Score = 28.9 bits (65), Expect = 3.1
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 131 LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 178
L A + L+FA G Y APL LYVE+ + AGG
Sbjct: 69 LLAALNKQGQSLLFAMNGGMY-HPDYAPLGLYVENGKEQVPLNTAGGE 115
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 73 and 85 amino acids
in length.
Length = 83
Score = 26.8 bits (59), Expect = 4.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 123 LLVGSGPILGLAPAPEYTFL 142
LL+G+ ILGL AP Y F+
Sbjct: 59 LLLGTASILGLLAAPAYFFI 78
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 27.7 bits (62), Expect = 4.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 259 EERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLV 314
L EA E+ G +++ P G+ + GK + FK GA ++ E +V
Sbjct: 56 SNGRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIV 111
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 28.8 bits (65), Expect = 5.1
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 277 TGTAVVVAPVGSITYRG--------KRIE--FKTGAQSVSREL 309
T TAVVVA GS TY G R + F G SVS L
Sbjct: 253 TATAVVVA-TGSRTYFGSLAKSIVGTRAQTAFDRGVNSVSWLL 294
>gnl|CDD|237973 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.
Length = 759
Score = 28.1 bits (63), Expect = 7.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 36 KIELSPSSGVLNYGQGLFEG---------MKAYRKEDGQLVLFRP 71
K +L+ S ++N+G L+EG M A ++ +LV+F P
Sbjct: 191 KRDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEP 235
>gnl|CDD|221146 pfam11597, Med13_N, Mediator complex subunit 13 N-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 370
Score = 27.9 bits (62), Expect = 8.5
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 261 RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 319
+ + + + E GT V AP GSI + + G Q S + + V +
Sbjct: 238 VLVDLSDSPQMIEDLPPGTDVWPAPSGSI---ARLVSTVDGTQLASDDPSPSSVKLTPP 293
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 28.0 bits (62), Expect = 8.8
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 206 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI--IEIASDCGFQVEER-- 261
D V+KK +E ++ + LKG PA + +L GITR +I I S FQ +
Sbjct: 2788 DLVSKKLFKEENA-RVIALKGE----PAIAEPVLLGITRAAIGSDSIISAASFQETTKVL 2842
Query: 262 -----AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFK 299
A+ D L + E G + PVG+ Y+ K+I +
Sbjct: 2843 TEASIAMKKDFLEDLKENVVLGRMI---PVGTGMYKNKKIVLR 2882
>gnl|CDD|235934 PRK07101, PRK07101, hypothetical protein; Provisional.
Length = 187
Score = 27.2 bits (61), Expect = 8.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 217 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 274
S N+ G TP +L G R ++ D G ++E+ I V++LL+ +E+
Sbjct: 128 SIGNLAFFDGKQWFTPKKP--LLKGTQRARLL----DEGK-IKEKDITVEDLLQYEEI 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.405
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,452,720
Number of extensions: 1732188
Number of successful extensions: 1510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 55
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)