RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020036
(332 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 250 bits (640), Expect = 6e-82
Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 16/345 (4%)
Query: 1 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 60
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 21 GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80
Query: 61 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 120
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+
Sbjct: 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYV 140
Query: 121 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHRATPGGAGGVK 179
RP+L+G+ P LG++ V PVG YF + P++L + F RA GG G K
Sbjct: 141 RPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYK 200
Query: 180 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATS 235
NY P + A RG VL+L + + E + + TP +
Sbjct: 201 LGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLN 260
Query: 236 GTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGS 288
G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV
Sbjct: 261 GVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 320
Query: 289 ITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 331
I Y+ + + T + L IQ G W +
Sbjct: 321 ILYKDRNLHIPTMENGPELILRFQKELKEIQYG--IRAHEWMFPV 363
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 183 bits (465), Expect = 2e-56
Identities = 83/309 (26%), Positives = 141/309 (45%), Gaps = 18/309 (5%)
Query: 29 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 88
G + R+ ++ S L+YG +FEG++ Y G V+FR ++ RL A+ P
Sbjct: 9 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFP 67
Query: 89 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF--LVFAS 146
+ A + + S YIRPL+ +G+ P Y+ ++ A
Sbjct: 68 VSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 147 PVGNYFKEGLAPLNL-YVEDEFHRATPGGAGGVKAIS-NYAPVLKAISRAKNRGFSDVLY 204
P G Y + + ++RA P NY L S A+ G+ + +
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 181
Query: 205 LDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIP 264
LD + E + N+F +K ++ TP + + L GITR +II++A + G +V E+ +
Sbjct: 182 LD--VNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLS 239
Query: 265 VDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELYSTLVGIQTGLIKD 323
+ L ADEVF +GTA + PV S+ G ++ E + G V++ + G+ TG +D
Sbjct: 240 RESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCG--PVTKRIQQAFFGLFTGETED 295
Query: 324 NKGWTVEIN 332
GW ++N
Sbjct: 296 KWGWLDQVN 304
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 114 bits (286), Expect = 2e-30
Identities = 59/284 (20%), Positives = 105/284 (36%), Gaps = 23/284 (8%)
Query: 29 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 88
++ + ++++ +G G++E +K Y E +F +++ RL AE++ +
Sbjct: 7 DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRIT 61
Query: 89 SPSIDQFI-DAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 147
P + + N+ G +Y + S ++ +
Sbjct: 62 IPYTKDKFHQLLHELVEKNELN-----TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116
Query: 148 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 207
E L E R + N + A A +G + +
Sbjct: 117 ENPRPLENLEKGVKATFVEDIRWLRCDIKSL----NLLGAVLAKQEAHEKGCYEAILHR- 171
Query: 208 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 267
+ E SS N+F +K I+ T + IL GITR +I A++ V+E E
Sbjct: 172 --NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHE 229
Query: 268 LLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELY 310
L+ DE+F T T + PV I GK I + K G +R+L
Sbjct: 230 ALKMDELFVTSTTSEITPVIEI--DGKLIRDGKVG--EWTRKLQ 269
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 103 bits (258), Expect = 1e-26
Identities = 44/251 (17%), Positives = 83/251 (33%), Gaps = 15/251 (5%)
Query: 39 LSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 98
L+ S +G G F + DG++ + RLQ +R+ + Q
Sbjct: 12 LAVSDRATQFGDGCFTTARVI---DGKV--SLLSAHIQRLQDACQRLMISCDFWPQLEQE 66
Query: 99 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAP 158
K G L + G + T ++ + ++
Sbjct: 67 -------MKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNE 119
Query: 159 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 218
G+K ++ VL + L ++ + E +
Sbjct: 120 GITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADE---ALVLDSEGWVTECCA 176
Query: 219 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 278
N+F KGN++ TP + GI R+ I + + +Q+ E ++E L+ADE+
Sbjct: 177 ANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICN 236
Query: 279 TAVVVAPVGSI 289
+ V PV +
Sbjct: 237 ALMPVMPVCAC 247
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId:
1260]}
Length = 53
Score = 25.3 bits (55), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 189 KAISRAKNRGFSDVLYLDSVNK-KNLEEVSSCNIFILK 225
AI+ K G + Y +++NK K +EEV++ ILK
Sbjct: 13 DAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILK 50
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69
[TaxId: 12353]}
Length = 110
Score = 25.1 bits (55), Expect = 5.9
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 211 KNLEEVSSCNIFILKGNIISTPATSGTILA 240
KN ++S I + +G I T A +GT A
Sbjct: 12 KNFASINS-GILLSQGKFIMTRAVNGTTYA 40
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 25.6 bits (56), Expect = 7.9
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 43 SGVLNYGQGLF----EGMKAYRKEDGQLVLFRPDQNAIRLQTG---AERMCMPSPSIDQF 95
G+ N+ + M+A + + F D AE + +P + F
Sbjct: 98 VGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIF 157
Query: 96 IDAVKQTA 103
+D +
Sbjct: 158 LDNTHSSR 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.405
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,265,190
Number of extensions: 60117
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 10
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)