Query 020038
Match_columns 332
No_of_seqs 252 out of 1800
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:51:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gz0_A Hypothetical tRNA/RRNA 100.0 2E-47 6.8E-52 357.3 14.8 229 79-309 12-253 (253)
2 3nk6_A 23S rRNA methyltransfer 100.0 4.9E-47 1.7E-51 359.1 14.2 225 79-311 34-270 (277)
3 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 8.4E-46 2.9E-50 350.0 10.3 223 79-310 28-263 (274)
4 1x7o_A Avirb, rRNA methyltrans 100.0 6.9E-45 2.4E-49 345.9 13.1 224 79-309 40-279 (287)
5 2i6d_A RNA methyltransferase, 100.0 2.4E-44 8.1E-49 337.2 12.6 216 79-308 27-257 (257)
6 1v2x_A TRNA (GM18) methyltrans 100.0 6.1E-43 2.1E-47 314.9 18.1 171 147-319 9-180 (194)
7 1zjr_A TRNA (guanosine-2'-O-)- 100.0 5.2E-42 1.8E-46 312.8 17.3 171 140-311 5-175 (211)
8 3e5y_A TRMH family RNA methylt 100.0 4E-42 1.4E-46 300.9 10.6 150 159-310 4-156 (160)
9 3n4j_A RNA methyltransferase; 100.0 2.1E-41 7.2E-46 297.8 12.2 150 160-311 4-159 (165)
10 2ha8_A TAR (HIV-1) RNA loop bi 100.0 5.4E-41 1.9E-45 299.8 13.2 155 155-311 21-178 (184)
11 3l8u_A SMU.1707C, putative rRN 100.0 1.6E-40 5.3E-45 297.0 15.8 158 148-310 5-167 (182)
12 3kty_A Probable methyltransfer 100.0 3.1E-38 1.1E-42 279.0 10.8 145 160-308 10-172 (173)
13 3ilk_A Uncharacterized tRNA/RR 100.0 1.9E-34 6.4E-39 268.5 11.9 145 160-310 7-162 (244)
14 3onp_A TRNA/RRNA methyltransfe 100.0 1.9E-34 6.5E-39 269.2 10.7 145 160-310 4-164 (249)
15 3ic6_A Putative methylase fami 100.0 2.5E-34 8.7E-39 264.3 10.7 164 160-327 17-219 (223)
16 3dcm_X AdoMet, uncharacterized 99.7 1.2E-16 4.2E-21 143.5 9.0 149 160-310 4-189 (192)
17 2yy8_A ATRM56, UPF0106 protein 96.2 0.011 3.7E-07 52.6 7.0 121 177-310 21-151 (201)
18 2o3a_A UPF0106 protein AF_0751 95.8 0.0091 3.1E-07 52.1 4.9 114 177-305 24-143 (178)
19 2qmm_A UPF0217 protein AF_1056 93.2 0.41 1.4E-05 42.7 9.1 81 220-308 112-196 (197)
20 3aia_A UPF0217 protein MJ1640; 90.5 1.6 5.6E-05 39.2 10.0 80 220-307 123-206 (211)
21 2qwv_A UPF0217 protein VC_A105 81.8 6.5 0.00022 35.2 8.9 114 170-306 86-203 (208)
22 1vhk_A Hypothetical protein YQ 80.5 34 0.0012 31.3 13.7 142 162-304 83-251 (268)
23 3kw2_A Probable R-RNA methyltr 78.6 9 0.00031 35.1 9.1 148 161-309 79-248 (257)
24 1vhy_A Hypothetical protein HI 65.1 23 0.0008 32.2 8.4 148 163-315 83-252 (257)
25 1ns5_A Hypothetical protein YB 62.2 4.7 0.00016 34.4 2.9 73 225-306 60-142 (155)
26 4e8b_A Ribosomal RNA small sub 60.7 16 0.00054 33.2 6.4 140 161-304 79-239 (251)
27 1o6d_A Hypothetical UPF0247 pr 58.1 3.3 0.00011 35.7 1.3 68 233-307 65-142 (163)
28 4fak_A Ribosomal RNA large sub 53.0 8.9 0.0003 33.0 3.1 67 233-306 74-151 (163)
29 1to0_A Hypothetical UPF0247 pr 40.9 20 0.00068 30.9 3.5 47 255-306 101-147 (167)
30 3j1r_A Archaeal adhesion filam 36.7 23 0.0008 21.3 2.2 13 293-305 13-25 (26)
31 3ib6_A Uncharacterized protein 36.0 74 0.0025 26.1 6.3 50 216-265 33-88 (189)
32 3oii_A Essential for mitotic g 24.4 80 0.0027 29.0 4.7 89 205-305 152-247 (253)
33 1k3r_A Conserved protein MT000 22.5 58 0.002 30.1 3.4 22 173-194 27-48 (268)
34 3g1w_A Sugar ABC transporter; 20.1 2.6E+02 0.0089 24.1 7.2 45 149-193 25-69 (305)
No 1
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=2e-47 Score=357.25 Aligned_cols=229 Identities=21% Similarity=0.260 Sum_probs=189.2
Q ss_pred hhhhcChHHHHHHHHcCC-ccc---ccCc-----cchHHhhhhhcCCcc--cccccCCC--cccCcHHHHHhhCCCcchh
Q 020038 79 EKLLTNPDDVTQFMKMER-SCM---VNDG-----VGSMESLSNKRWFPY--LDRYKCGD--VYLSSSEVVEALSPYLMEE 145 (332)
Q Consensus 79 e~ll~g~~~V~~~l~~~~-r~~---~~~~-----~~~i~~La~~~~i~~--~~~~~l~~--~~~~~qgV~~~v~~~~~~~ 145 (332)
..+++|+|.|.++++++. .+. +.+. ...+..++++.++++ +++..++. ....||||++.+.+..+..
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~ 91 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQ 91 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEEECCCCCCC
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCccchhHHHHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEEEeccccCc
Confidence 468999999999999884 333 2221 124445566666664 44443433 3467999999998765421
Q ss_pred hHHHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHH
Q 020038 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPREC 225 (332)
Q Consensus 146 r~~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~ 225 (332)
. ..+.++++.+..+++||||+++||+|+|+|+|||++||+++|++.+++++++++++.|+|||+.+|+|+.++.|+.++
T Consensus 92 ~-~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~ 170 (253)
T 1gz0_A 92 E-NDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART 170 (253)
T ss_dssp G-GGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHH
T ss_pred H-HHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhcchheEEEEEEeCCHHHH
Confidence 1 123344443345789999999999999999999999999999998877777888999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 020038 226 FNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (332)
Q Consensus 226 l~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~ 305 (332)
++.|+++|+++++++..+ +.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||+.
T Consensus 171 l~~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~ 249 (253)
T 1gz0_A 171 MRMLQEENIWIVGTAGEA-DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV 249 (253)
T ss_dssp HHHHHHTTCEEEEECTTC-SEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCC-CcchhhccCCCCEEEEECCCCcCcCHHHHHhCCEEEEECCCCCCCceeHHHHHHHHHHHHH
Confidence 999999999999999754 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 020038 306 CDRA 309 (332)
Q Consensus 306 rqR~ 309 (332)
|||.
T Consensus 250 rq~~ 253 (253)
T 1gz0_A 250 RQRS 253 (253)
T ss_dssp HHTC
T ss_pred HhhC
Confidence 9873
No 2
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=4.9e-47 Score=359.08 Aligned_cols=225 Identities=21% Similarity=0.231 Sum_probs=183.9
Q ss_pred hhhhcChHHHHHHHHcCCccc---ccCc---cchHHhhhhhcCCcc--cccccCCC--cccCcHHHHHhhCCCcchhhHH
Q 020038 79 EKLLTNPDDVTQFMKMERSCM---VNDG---VGSMESLSNKRWFPY--LDRYKCGD--VYLSSSEVVEALSPYLMEERKE 148 (332)
Q Consensus 79 e~ll~g~~~V~~~l~~~~r~~---~~~~---~~~i~~La~~~~i~~--~~~~~l~~--~~~~~qgV~~~v~~~~~~~r~~ 148 (332)
..+++|+|.|.++++++.++. +.+. ...+...++++++++ +++..++. ....||||++.+.......
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~~~l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~--- 110 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPAR--- 110 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTSCCCHHHHHHHHHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCCC---
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCccCcHHHHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCCC---
Confidence 468899999999999986653 2221 123344556667764 55444554 4568999999987653322
Q ss_pred HHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEec-CCCCccCccceeccCCcceeeeeeEeCChHHHHH
Q 020038 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS-CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (332)
Q Consensus 149 ~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~-~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~l~ 227 (332)
+++++.. ..+ +||||+++||+|+|+|+|||++||+++|++.+ ++++++++++.|+|+|+.+|+|+.++ |+.++++
T Consensus 111 -l~~~~~~-~~~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l~ 186 (277)
T 3nk6_A 111 -LADIAER-GGD-VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAVS 186 (277)
T ss_dssp -HHHHHHH-CSC-EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHHH
T ss_pred -HHHHhcc-CCC-EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHHH
Confidence 2333332 235 89999999999999999999999999999988 55566777899999999999999999 9999999
Q ss_pred HHHhCCcEEEEEecCCCcccccc-cCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 020038 228 VLRSRGYRIATTHVGMDAISVYD-MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (332)
Q Consensus 228 ~Lk~~G~~i~a~~~~~~~~~l~~-~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~r 306 (332)
.|+++||++++++.++ +.++++ .++++|++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||+.|
T Consensus 187 ~lk~~g~~v~~~~~~~-~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~r 265 (277)
T 3nk6_A 187 FLRDNDIALMVLDTDG-DLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSA 265 (277)
T ss_dssp HHHHTTCCEEEECTTC-SEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSSTTCCCCHHHHHHHHHHHTHH
T ss_pred HHHhcCCeEEEEecCC-CcchhhhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999875 678999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q 020038 307 DRATR 311 (332)
Q Consensus 307 qR~~~ 311 (332)
||..+
T Consensus 266 q~~~~ 270 (277)
T 3nk6_A 266 RNFAV 270 (277)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 98754
No 3
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=8.4e-46 Score=350.05 Aligned_cols=223 Identities=21% Similarity=0.233 Sum_probs=180.4
Q ss_pred hhhhcChHHHHHHHHcCCccc---ccCc-c----chHHhhhhhcC-Ccc--cccccCCC--cccCcHHHHHhhCCCcchh
Q 020038 79 EKLLTNPDDVTQFMKMERSCM---VNDG-V----GSMESLSNKRW-FPY--LDRYKCGD--VYLSSSEVVEALSPYLMEE 145 (332)
Q Consensus 79 e~ll~g~~~V~~~l~~~~r~~---~~~~-~----~~i~~La~~~~-i~~--~~~~~l~~--~~~~~qgV~~~v~~~~~~~ 145 (332)
..+++|+|.|.|+++++..+. +.+. . ..+..++++++ +++ +++..++. ....||||++.+......
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~- 106 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERT- 106 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTCCCHHHHHHHHCC-----CEEEEECHHHHHHHCCSSSCCSEEEEEECCCCC-
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCcccchHHHHHHHHHhcCCccEEEeCHHHHHHHhCCCCCCeEEEEEeCCCCC-
Confidence 468899999999999875443 2221 1 12333444445 553 44433433 345799999988654321
Q ss_pred hHHHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHH
Q 020038 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPREC 225 (332)
Q Consensus 146 r~~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~ 225 (332)
+++++ ....+++||||+++||+|+|+|+|||++||+++|++.++ ++++++++.|+|+|+.+|+|+.+ .|+.++
T Consensus 107 ----l~~~~-~~~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~v~ras~Ga~~~l~~~~-~~l~~~ 179 (274)
T 1ipa_A 107 ----LEEYR-PSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA-ASESEV 179 (274)
T ss_dssp ----CCCCC-CCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE-ECHHHH
T ss_pred ----HHHHh-ccCCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC-cCcCCHHHHHHcCChhhcceeEe-CCHHHH
Confidence 11111 123458999999999999999999999999999999888 77778899999999999999998 999999
Q ss_pred HHHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 020038 226 FNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (332)
Q Consensus 226 l~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~ 305 (332)
++.|+++||++++++.++ +.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||+.
T Consensus 180 l~~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~ 258 (274)
T 1ipa_A 180 LDWIKQHNLPLVATTPHA-EALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEAL 258 (274)
T ss_dssp HHHHHHTTCCEEEECTTC-SSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCC-CcchhhcCCCCCEEEEECCCCcCCCHHHHHhCCeEEEECCCCCCCceeHHHHHHHHHHHHH
Confidence 999999999999999875 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 020038 306 CDRAT 310 (332)
Q Consensus 306 rqR~~ 310 (332)
|||..
T Consensus 259 rq~~~ 263 (274)
T 1ipa_A 259 RQRLL 263 (274)
T ss_dssp HHHTC
T ss_pred Hhccc
Confidence 99865
No 4
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=6.9e-45 Score=345.86 Aligned_cols=224 Identities=22% Similarity=0.237 Sum_probs=183.7
Q ss_pred hhhhcChHHHHHHHHcCCccc---ccCc-c--chHHhhhhhcCCcc--cccccCCC--ccc-CcHHHHHhhCCCcchhhH
Q 020038 79 EKLLTNPDDVTQFMKMERSCM---VNDG-V--GSMESLSNKRWFPY--LDRYKCGD--VYL-SSSEVVEALSPYLMEERK 147 (332)
Q Consensus 79 e~ll~g~~~V~~~l~~~~r~~---~~~~-~--~~i~~La~~~~i~~--~~~~~l~~--~~~-~~qgV~~~v~~~~~~~r~ 147 (332)
..+++|.|.|.++++++..+. +.+. . ..+..+.+...+++ +++..++. ... .||||++.+......
T Consensus 40 ~f~veG~~~V~eal~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~~~--- 116 (287)
T 1x7o_A 40 EFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADD--- 116 (287)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEESSCCCCHHHHHHHHHSCSEEEEECHHHHTTSSCSSSCCCSEEEEEECCCCC---
T ss_pred cEEEEeHHHHHHHHhCCCCeEEEEEecCcccchhHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCCcEEEEEecCCCC---
Confidence 468899999999999975443 2221 1 12333333323442 44444444 345 899999998754421
Q ss_pred HHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHHHH
Q 020038 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (332)
Q Consensus 148 ~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~l~ 227 (332)
+++++. ...+++||||+|+||+|+|+|+|||++||+++|++.+++++++++++.|+|+|+.+|+|+.++.|+.++++
T Consensus 117 --l~~~~~-~~~~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~~d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l~ 193 (287)
T 1x7o_A 117 --LDRIPV-REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMD 193 (287)
T ss_dssp --GGGSCC-CTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESSHHHHHH
T ss_pred --HHHHhc-ccCCEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCCcCccCHHHHhhhcCcceeeeEEEeCCHHHHHH
Confidence 222221 22468999999999999999999999999999999988878878899999999999999999999999999
Q ss_pred HH---HhCCcE--EEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHH
Q 020038 228 VL---RSRGYR--IATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (332)
Q Consensus 228 ~L---k~~G~~--i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Ly 302 (332)
.| +++||+ +++++.+ ++.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+||
T Consensus 194 ~l~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~alV~GnE~~Gls~~~~~~~d~~v~IPm~g~~~SLNvavAaaI~ly 272 (287)
T 1x7o_A 194 WVEARRAAGTPIVLVGTDEH-GDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAILY 272 (287)
T ss_dssp HHHHHHHHTCCCEEEEECTT-CSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSEEEECCCSSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEEECC-CCccHhhcCCCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCceEHHHHHHHHHH
Confidence 99 999999 9999987 46789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 020038 303 HAVCDRA 309 (332)
Q Consensus 303 e~~rqR~ 309 (332)
|+.|||.
T Consensus 273 e~~rq~~ 279 (287)
T 1x7o_A 273 EAVRQRI 279 (287)
T ss_dssp HHHHHHS
T ss_pred HHHHhcc
Confidence 9999986
No 5
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.4e-44 Score=337.15 Aligned_cols=216 Identities=19% Similarity=0.245 Sum_probs=174.1
Q ss_pred hhhhcChHHHHHHHHcCCccc---ccCccchHHhhhhhcCCcc--ccc-ccCCC--cccCcHHHHHhhCCCcchhhHHHH
Q 020038 79 EKLLTNPDDVTQFMKMERSCM---VNDGVGSMESLSNKRWFPY--LDR-YKCGD--VYLSSSEVVEALSPYLMEERKERF 150 (332)
Q Consensus 79 e~ll~g~~~V~~~l~~~~r~~---~~~~~~~i~~La~~~~i~~--~~~-~~l~~--~~~~~qgV~~~v~~~~~~~r~~~l 150 (332)
..+++|+|.|.|+++. .++. +.+. ....+.++.++++ +++ ..++. ....||||++.+...... +
T Consensus 27 ~f~veG~~~v~eal~~-~~i~~l~~~~~--~~~~l~~~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~~~-----l 98 (257)
T 2i6d_A 27 AFAVEGPKLVGEMLPF-YRCRMLVGTAA--MLRAVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEP-----E 98 (257)
T ss_dssp EEEEESHHHHHHHGGG-SCEEEEEEEHH--HHHTSCCCTTCEEEEECTTCCGGGTCCSSSCCSEEEEEECCCCC-----C
T ss_pred cEEEEcHHHHHHHHhc-CCcCEEEEEcC--chHHHHHhcCCCEEEeChHHHHHHHhcCCCCCeEEEEEECCCCC-----h
Confidence 4678999999999998 5443 1111 1111222333443 555 44544 446799999998654321 1
Q ss_pred HHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHHHHHHH
Q 020038 151 VNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLR 230 (332)
Q Consensus 151 ~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~l~~Lk 230 (332)
+++ .+++||||+|+||+|+|+|+|||++||+++|++.+++++++++++.|+|||+.+|+|+....|+.++++.|+
T Consensus 99 ~~~-----~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~v~ras~Ga~~~l~~~~~~~l~~~l~~l~ 173 (257)
T 2i6d_A 99 PVV-----EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFR 173 (257)
T ss_dssp CCC-----CSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHHHHH
T ss_pred HHh-----CCeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcCCCCCcCCHHHheecCCcceeeeEEEeCCHHHHHHHHH
Confidence 111 158999999999999999999999999999999888778878899999999999999985599999999999
Q ss_pred hCCcEEEEEecCCCccccccc--CCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCC-----CCCCcccHHHHHHHHHHH
Q 020038 231 SRGYRIATTHVGMDAISVYDM--DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMK-----GMVDSFNVSVAAGILMHH 303 (332)
Q Consensus 231 ~~G~~i~a~~~~~~~~~l~~~--~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~-----G~v~SLNVsvAaaI~Lye 303 (332)
++||++++++.++ ..+++++ +++++++||||||+.||++++++.||..|+|||. |.++|||||+|+||+|||
T Consensus 174 ~~g~~i~~~~~~~-~~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~~~~~~g~~~SLNvsvAaaI~lye 252 (257)
T 2i6d_A 174 RQGIPVYGAFLDG-QSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSE 252 (257)
T ss_dssp HTTCCEEEEEEEE-EETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHHHHHHHHH
T ss_pred HCCCEEEEEECCC-CccHHHhhhCcCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCcCCCCCCCCChhHHHHHHHHHHH
Confidence 9999999999874 5688888 8999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhh
Q 020038 304 AVCDR 308 (332)
Q Consensus 304 ~~rqR 308 (332)
+.||+
T Consensus 253 ~~rq~ 257 (257)
T 2i6d_A 253 WRRRS 257 (257)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 99875
No 6
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=6.1e-43 Score=314.86 Aligned_cols=171 Identities=33% Similarity=0.489 Sum_probs=152.7
Q ss_pred HHHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHHH
Q 020038 147 KERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECF 226 (332)
Q Consensus 147 ~~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~l 226 (332)
...++++++++..+++||||+++||+|+|+|+|||++||+++|++++++.+. +++.|+|+|+.+|+|+..+.|+.+++
T Consensus 9 ~~~~~~~l~~~~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~--~~~~r~s~Ga~~~l~~~~~~~l~~~l 86 (194)
T 1v2x_A 9 RRRIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGV--PTFNETSGGSHKWVYLRVHPDLHEAF 86 (194)
T ss_dssp HHHHHHHHTTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGS--CCCCSSCSSGGGTSEEEEESSHHHHH
T ss_pred HhhHHHHHhcCCCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCc--hhhHHHCCCChheeeeEecCCHHHHH
Confidence 4567777777777899999999999999999999999999999998765432 67899999999999999999999999
Q ss_pred HHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 020038 227 NVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (332)
Q Consensus 227 ~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~r 306 (332)
+.++++||++++++...++.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||+.|
T Consensus 87 ~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvs~AaaI~lye~~r 166 (194)
T 1v2x_A 87 RFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQR 166 (194)
T ss_dssp HHHHHTTCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEecCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCceeHHHHHHHHHHHHHH
Confidence 99999999999999765678899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCC-CCChh
Q 020038 307 DRATRLVV-VFPLI 319 (332)
Q Consensus 307 qR~~~~~~-~g~l~ 319 (332)
||...... .++++
T Consensus 167 q~~~~~~~~~~~~~ 180 (194)
T 1v2x_A 167 QRLKAGLYDRPRLD 180 (194)
T ss_dssp HHHHHTGGGSCCSC
T ss_pred HhcccCCcCCCCCC
Confidence 98654332 34553
No 7
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=5.2e-42 Score=312.78 Aligned_cols=171 Identities=32% Similarity=0.531 Sum_probs=153.0
Q ss_pred CCcchhhHHHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEe
Q 020038 140 PYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW 219 (332)
Q Consensus 140 ~~~~~~r~~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~ 219 (332)
++..+.+...+++++++++.+++||||+++||+|+|+|+|||++||+++|+++++..+. ...+.|+|+|+.+|+|+..+
T Consensus 5 ~~~~~~~~~~~~~~l~~~~~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~-~~~~~r~s~Ga~~~l~~~~~ 83 (211)
T 1zjr_A 5 YLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKV 83 (211)
T ss_dssp -CHHHHHHHHHHHHHTTCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEEC
T ss_pred cccChhhHhhHHHHHhccCCCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCc-hHHHHHHcCCCcccceeEec
Confidence 34445566678888887767899999999999999999999999999999998765443 22456999999999999999
Q ss_pred CChHHHHHHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHH
Q 020038 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGI 299 (332)
Q Consensus 220 ~nl~~~l~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI 299 (332)
.|++++++.++++||++++++...++.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||
T Consensus 84 ~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvsvAaaI 163 (211)
T 1zjr_A 84 DNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGI 163 (211)
T ss_dssp SCHHHHHHHHHHTTCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCcEEEeCCCCCCCeEEHHHHHHH
Confidence 99999999999999999999976567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhc
Q 020038 300 LMHHAVCDRATR 311 (332)
Q Consensus 300 ~Lye~~rqR~~~ 311 (332)
+|||+.|||...
T Consensus 164 ~lye~~rq~~~~ 175 (211)
T 1zjr_A 164 ILYEAQRQREEK 175 (211)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhcc
Confidence 999999998644
No 8
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=100.00 E-value=4e-42 Score=300.91 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=137.5
Q ss_pred ccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccC-ccceeccCCcceeeeeeEeCChHHHHHHHHhCCcEEE
Q 020038 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY-RENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIA 237 (332)
Q Consensus 159 ~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~-~~~~raS~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~i~ 237 (332)
+.++||||+++||+|+|+|+|||++||++.++ +.+.+.+.+ +++.|+|+|+.+|+|+.++.|++++++.++++||+++
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~vi-v~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~g~~i~ 82 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHL-IEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMF 82 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEE-ESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEEE-ECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhCCCEEE
Confidence 35899999999999999999999999997775 555555555 4688999999999999999999999999999999999
Q ss_pred EEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHh--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 020038 238 TTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310 (332)
Q Consensus 238 a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~--cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~rqR~~ 310 (332)
+++.. ++.+++++++++|++||||||+.||++++++. ||..|+|||.|.++|||||+|+||+|||+.|||..
T Consensus 83 ~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~~~ 156 (160)
T 3e5y_A 83 AFTTR-GSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGF 156 (160)
T ss_dssp EECST-TCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHHHTTT
T ss_pred EEecC-CCccccccCCCCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCCCCCCeehHHHHHHHHHHHHHHhccC
Confidence 99986 46889999999999999999999999999999 99999999999999999999999999999999864
No 9
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=2.1e-41 Score=297.84 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=137.8
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCc-cceeccCCcceeeeeeEeCChHHHHHHHHh---CCcE
Q 020038 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRS---RGYR 235 (332)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~-~~~raS~Ga~~~v~v~~~~nl~~~l~~Lk~---~G~~ 235 (332)
+++||||+++||+|+|+|+|||++||++.++ +.+.+.+++. ++.|+++|+.+|+|+.++.|++++++.+|+ +|++
T Consensus 4 ~~~vvL~~~~dp~NlGaI~Rta~a~G~~~vi-v~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~~ 82 (165)
T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHL-IKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPAR 82 (165)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEEE-ESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTT
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCeEEE-ECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccCCCE
Confidence 5899999999999999999999999997775 4555655554 678999999999999999999999999998 9999
Q ss_pred EEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHh--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 020038 236 IATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311 (332)
Q Consensus 236 i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~--cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~rqR~~~ 311 (332)
+++++.. ++.+++++++++|++||||||+.||++++++. ||..|+|||.|.++|||||+|+||+|||+.|||...
T Consensus 83 i~~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~~ 159 (165)
T 3n4j_A 83 LFALTTK-GTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYP 159 (165)
T ss_dssp EEEECTT-CSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHHTCT
T ss_pred EEEEEcC-CCcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCCCCCceeeHHHHHHHHHHHHHHhcccc
Confidence 9999986 46789999999999999999999999999999 899999999999999999999999999999998754
No 10
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=299.85 Aligned_cols=155 Identities=18% Similarity=0.310 Sum_probs=139.7
Q ss_pred hcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccc-eeccCCcceeeeeeEe--CChHHHHHHHHh
Q 020038 155 KNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYREN-RHVSMGAEKWLDIELW--DAPRECFNVLRS 231 (332)
Q Consensus 155 ~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~-~raS~Ga~~~v~v~~~--~nl~~~l~~Lk~ 231 (332)
+++..+++||||+++||+|+|+|+|||++||+++|++.+. ....++. .|+|+|+.+|+|+..+ .|+.++++.+|+
T Consensus 21 ~~~~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~--~~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~ 98 (184)
T 2ha8_A 21 GKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSL--QCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKT 98 (184)
T ss_dssp CCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCG--GGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECCC--CCCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHH
Confidence 3456678999999999999999999999999999987542 2234454 4889999999999876 899999999999
Q ss_pred CCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 020038 232 RGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311 (332)
Q Consensus 232 ~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~rqR~~~ 311 (332)
+||++++++.++++.++++++++++++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||+.|||..+
T Consensus 99 ~g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~~ 178 (184)
T 2ha8_A 99 EGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLS 178 (184)
T ss_dssp TTCEEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCcEEEECCCCCCCcchHHHHHHHHHHHHHHHhhcc
Confidence 99999999987667889999999999999999999999999999999999999999999999999999999999998754
No 11
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=100.00 E-value=1.6e-40 Score=296.99 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=129.0
Q ss_pred HHHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccC-ccceeccCCcceeeeeeEeCChHHHH
Q 020038 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY-RENRHVSMGAEKWLDIELWDAPRECF 226 (332)
Q Consensus 148 ~~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~-~~~~raS~Ga~~~v~v~~~~nl~~~l 226 (332)
+.++...++++.+++||||+++||+|+|+|+|||++||++.+++. +.+.+.+ +++.|+|+|+++++|+.++.|+.+++
T Consensus 5 ~~~~~~~~~~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~-~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l 83 (182)
T 3l8u_A 5 QLEKENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIR-PMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFM 83 (182)
T ss_dssp ----------CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEES-CCSSCCCTTTC------CCC-CCEEEESSHHHHH
T ss_pred HHHHHHhhcCCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEEC-CCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHH
Confidence 344555667788999999999999999999999999999877654 4555555 57889999999999999999999999
Q ss_pred HHHHhCCcEEEEEecCCCcccccccCCCC--CeEEEEcCCCCCCCHHHHH-hCCcEEEECCCC-CCCcccHHHHHHHHHH
Q 020038 227 NVLRSRGYRIATTHVGMDAISVYDMDWSC--PTAIVVGNENRGVSDEALS-LSDLRCSIPMKG-MVDSFNVSVAAGILMH 302 (332)
Q Consensus 227 ~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~--~~aLV~GnE~~GLs~~~le-~cD~~V~IPm~G-~v~SLNVsvAaaI~Ly 302 (332)
+.+ |+++++++.. ++.+++++++++ +++||||||+.||++++++ .||.+|+|||.| .++|||||+|+||+||
T Consensus 84 ~~l---g~~i~~~~~~-~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~g~~~~SLNVsvAaaI~ly 159 (182)
T 3l8u_A 84 NIC---SGKLHLITKF-ANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVY 159 (182)
T ss_dssp HHC---CSEEEEECSS-CSSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCCTTTCSCCCHHHHHHHHHH
T ss_pred HHC---CCEEEEEEcC-CCccccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCCCCCCCCEeHHHHHHHHHH
Confidence 988 9999999876 467899999988 9999999999999999996 999999999999 9999999999999999
Q ss_pred HHHHhhhh
Q 020038 303 HAVCDRAT 310 (332)
Q Consensus 303 e~~rqR~~ 310 (332)
|+.|||..
T Consensus 160 E~~rq~~~ 167 (182)
T 3l8u_A 160 EALRQQDF 167 (182)
T ss_dssp HHHHHTTT
T ss_pred HHHHhccc
Confidence 99999864
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=3.1e-38 Score=278.95 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=128.1
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCc--cCccceeccCCcceeeeee-EeCChHHHHHHHHhCCcEE
Q 020038 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSK--RYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRI 236 (332)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~--~~~~~~raS~Ga~~~v~v~-~~~nl~~~l~~Lk~~G~~i 236 (332)
+++||||+++||+|+|+|+|||++||+++|+++++.+.+ .++++.|+|+|+.+++|+. .++|++++++.++ ++
T Consensus 10 ~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~~~----~v 85 (173)
T 3kty_A 10 RVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT----LA 85 (173)
T ss_dssp TEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS----EE
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHhCC----eE
Confidence 589999999999999999999999999999998887764 3678999999999999964 4579999988876 68
Q ss_pred EEEecCCC------------ccccc---ccCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHH
Q 020038 237 ATTHVGMD------------AISVY---DMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (332)
Q Consensus 237 ~a~~~~~~------------~~~l~---~~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~L 301 (332)
++++..+. +.++. +.++++|++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|
T Consensus 86 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvs~AaaI~l 165 (173)
T 3kty_A 86 FALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAA 165 (173)
T ss_dssp EEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHHHHH
T ss_pred EEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCeEeHHHHHHHHH
Confidence 88887532 23566 7788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 020038 302 HHAVCDR 308 (332)
Q Consensus 302 ye~~rqR 308 (332)
||+.||.
T Consensus 166 ye~~r~~ 172 (173)
T 3kty_A 166 WELRYAL 172 (173)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999885
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=1.9e-34 Score=268.52 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=124.8
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeee-EeCChHHHHHHHHhCCcEEEE
Q 020038 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRIAT 238 (332)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~-~~~nl~~~l~~Lk~~G~~i~a 238 (332)
.+.||||+++||+|+|+|+|||++||++++++++++ ++.+++.|+|+||.++++.. .+.+++++++.++ ++++
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~--~~~~~a~r~A~GA~~~l~~~~~~~~l~eal~~~~----~vva 80 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDCS----LVIG 80 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCS----EEEE
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC--CCCHHHHHHcCChhheeceeEEeCCHHHHHHhCC----eEEE
Confidence 488999999999999999999999999999999877 56678999999999988844 4689999887763 7888
Q ss_pred EecCCCcccccc----------cCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhh
Q 020038 239 THVGMDAISVYD----------MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308 (332)
Q Consensus 239 ~~~~~~~~~l~~----------~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~rqR 308 (332)
++.......... .++.+|++||||||+.||++++++.||..|+|||.|.++|||||+|++|+|||+.||+
T Consensus 81 tt~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lyE~~rq~ 160 (244)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 160 (244)
T ss_dssp ECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred EccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCeeeHHHHHHHHHHHHHHHh
Confidence 887543221111 2347899999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q 020038 309 AT 310 (332)
Q Consensus 309 ~~ 310 (332)
..
T Consensus 161 ~~ 162 (244)
T 3ilk_A 161 LV 162 (244)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.9e-34 Score=269.16 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=123.7
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeE-eCChHHHHHHHHhCCcEEEE
Q 020038 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIEL-WDAPRECFNVLRSRGYRIAT 238 (332)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~-~~nl~~~l~~Lk~~G~~i~a 238 (332)
++.||||+++||+|+|+|+|||++||+++++++++++....+++.++|+||.++++..+ +.|++++++.+ .++++
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~~~~l~eal~~~----~~v~a 79 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDC----DYVFA 79 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTC----SEEEE
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEEeCCHHHHHHhC----CeEEE
Confidence 57899999999999999999999999999999988755556778889999998777554 68999998766 36888
Q ss_pred EecCCCcccccccCC---------------CCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 020038 239 THVGMDAISVYDMDW---------------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (332)
Q Consensus 239 ~~~~~~~~~l~~~~~---------------~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye 303 (332)
++... .++.+..+ .+|++||||||+.||++++++.||..|+|||.|.++|||||+|++|+|||
T Consensus 80 tt~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lYE 157 (249)
T 3onp_A 80 TTARG--RELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYE 157 (249)
T ss_dssp EESSC--CCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHH
T ss_pred EcCCC--CCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEEEEcCCCCCCceeHHHHHHHHHHH
Confidence 88753 34544433 35999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 020038 304 AVCDRAT 310 (332)
Q Consensus 304 ~~rqR~~ 310 (332)
+.||+..
T Consensus 158 ~~rq~~~ 164 (249)
T 3onp_A 158 WRRQHDE 164 (249)
T ss_dssp HHHC---
T ss_pred HHHhhcc
Confidence 9999864
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=100.00 E-value=2.5e-34 Score=264.27 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=131.5
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecCCCCcc-------------------CccceeccCCcceeeeee-Ee
Q 020038 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR-------------------YRENRHVSMGAEKWLDIE-LW 219 (332)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~~~~~~-------------------~~~~~raS~Ga~~~v~v~-~~ 219 (332)
.++||||+++||+|+|+|+|||++||+++|+++++++.+. ++++.|+|+|+.++++.. .+
T Consensus 17 ~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v~ 96 (223)
T 3ic6_A 17 NIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIV 96 (223)
T ss_dssp GEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEEE
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEEe
Confidence 4899999999999999999999999999999998776432 247889999999998854 45
Q ss_pred CChHHHHHHHHhCCcEEEEEecCCCccc------------cccc-CCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCC
Q 020038 220 DAPRECFNVLRSRGYRIATTHVGMDAIS------------VYDM-DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKG 286 (332)
Q Consensus 220 ~nl~~~l~~Lk~~G~~i~a~~~~~~~~~------------l~~~-~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G 286 (332)
.+++++++.+ +++++++..+.... +.+. ++.++++||||||+.||++++++.||..|+|||.|
T Consensus 97 ~~l~eal~~~----~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~IPm~~ 172 (223)
T 3ic6_A 97 ATLDEALADT----TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNP 172 (223)
T ss_dssp SCHHHHHTTE----EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCCT
T ss_pred CCHHHHHHhC----CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCceEEEecCCC
Confidence 7888887765 57899987653321 2122 34589999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhhhhccC---CC---CChhHHhhhhcc
Q 020038 287 MVDSFNVSVAAGILMHHAVCDRATRLV---VV---FPLILWFLLYKH 327 (332)
Q Consensus 287 ~v~SLNVsvAaaI~Lye~~rqR~~~~~---~~---g~l~~~~~~~~~ 327 (332)
.++|||||+|++|+|||+.||+..... .+ -...+..+||.|
T Consensus 173 ~~~SLNva~A~aI~lye~~rq~~~~~~~~~~~~~~a~~~~~e~~~~~ 219 (223)
T 3ic6_A 173 DYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQEDHAATHEQIKGMLAH 219 (223)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTTSCCCCCCC--CCCCHHHHHHHHTT
T ss_pred CCCeeEHHHHHHHHHHHHHHhhccCCCCCCcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999832111 01 123667777766
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.66 E-value=1.2e-16 Score=143.50 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=112.8
Q ss_pred cEEEEEeC-CCCcCc------------HHHHHHHHHHHCCCeEEEecCCCCccCcccee------ccCCcc------eee
Q 020038 160 SVCLVVEG-LSDFGN------------VSATFRSADALGVQSVHVVSCDSSKRYRENRH------VSMGAE------KWL 214 (332)
Q Consensus 160 ~l~vVLd~-i~dP~N------------lGaIiRTA~afGv~~Vii~~~~~~~~~~~~~r------aS~Ga~------~~v 214 (332)
.+.|+|.+ +.-..| +|.|.|+|..||++.++++.+...+.. .+.+ .+.|+. +-+
T Consensus 4 ~~~v~LvhyPv~~~~~~~~~t~vtn~dihdiARamkt~Gl~~l~LV~P~~~~~~-~a~~~~~~w~~~~Ga~~np~r~d~L 82 (192)
T 3dcm_X 4 KVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQD-MVSKMLKFWREGFGSRYNPSRAESL 82 (192)
T ss_dssp SEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHHHH-HHHHHHHHHHTSGGGGTCSSSHHHH
T ss_pred ceEEEEecccccCCCCCEeeeecccccHHHHHHHHHhcCCceEEEECCccccHH-HHHHHHHhhhcccCcccCcCHHHHh
Confidence 46777775 666667 999999999999999999988653221 1222 245552 222
Q ss_pred -eeeEeCChHHHHHHHHh---CCcEEEEEecCCC--ccccccc-----CCCCCeEEEEcCCCCCCCHHHHHhCCcEE-EE
Q 020038 215 -DIELWDAPRECFNVLRS---RGYRIATTHVGMD--AISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDLRC-SI 282 (332)
Q Consensus 215 -~v~~~~nl~~~l~~Lk~---~G~~i~a~~~~~~--~~~l~~~-----~~~~~~aLV~GnE~~GLs~~~le~cD~~V-~I 282 (332)
.+..+++++++++.+.+ ++..++||+.... ..+..++ ...+|++||||. ++||+++.++.||.++ .|
T Consensus 83 ~~a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~~l~~I 161 (192)
T 3dcm_X 83 KLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDYVLEPI 161 (192)
T ss_dssp TTEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSEEBCCT
T ss_pred ccCeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCEEEccC
Confidence 34556899999999974 5778899986422 2233332 246899999999 6999999999999999 89
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 020038 283 PMKGMVDSFNVSVAAGILMHHAVCDRAT 310 (332)
Q Consensus 283 Pm~G~v~SLNVsvAaaI~Lye~~rqR~~ 310 (332)
|..+...||||++|++|+||+++..-.+
T Consensus 162 p~~~eY~~Lnl~~AVaIiLdrl~g~~~~ 189 (192)
T 3dcm_X 162 RAQSDFNHLSVRAAAAIIIDRLIGENYA 189 (192)
T ss_dssp TTTSSCCCCCHHHHHHHHHHHHTTTCC-
T ss_pred CCCCCCCccCHHHHHHHHHHHHcCchhh
Confidence 9999999999999999999999765443
No 17
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.011 Score=52.57 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=78.6
Q ss_pred HHHHHHHHCCCeEEEecCCCCccCccce--eccCCcceeeeeeEeCChHHHHHHHHhCCcEEEEEecCCCcccccc----
Q 020038 177 TFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYD---- 250 (332)
Q Consensus 177 IiRTA~afGv~~Vii~~~~~~~~~~~~~--raS~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~i~a~~~~~~~~~l~~---- 250 (332)
+.-||-|||++++++.+.........+. -..-|+.|++... .++..+++.+ |..|+-+++=+ .++.+
T Consensus 21 V~LtARAfGA~~iil~~~~D~~v~esv~dV~~rWGG~F~ve~~--~~wk~~ik~w---gG~VVHLTMYG--~~i~dvi~e 93 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFN--RNWRKVMKEF---TGVKVHLTMYG--LHVDDVIEE 93 (201)
T ss_dssp HHHHHHHTTCSEEEESSSCCHHHHHHHHHHHHHHCSCCBCCBC--SCHHHHHHHC---CSEEEEEEEEE--EEHHHHHHH
T ss_pred HHHHHHHhcCCeEEEcCCcChhHHHHHHHHHHhcCCceEEEEC--CCHHHHHHhc---CCEEEEEecCC--CchHHHHHH
Confidence 4568999999999877642222222221 1234666665433 5766776666 66776666532 23322
Q ss_pred cC----CCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 020038 251 MD----WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310 (332)
Q Consensus 251 ~~----~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~rqR~~ 310 (332)
+. -.++..+|+|.|. ++.++-+.||+.|.|=-.+.-+ ..|.||+|-.++.-+..
T Consensus 94 Ir~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~~G~eL 151 (201)
T 2yy8_A 94 LKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLLEGKGL 151 (201)
T ss_dssp HHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHTTTGGG
T ss_pred HHhhcccCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhcCCcch
Confidence 22 1468999999997 9999999999999996544332 35778888877754443
No 18
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=95.81 E-value=0.0091 Score=52.14 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=72.7
Q ss_pred HHHHHHHHCCCeEEEecCCCCccCccce--eccCCcceeeeeeEeCChHHHHHHHHhCCcEEEEEecCCCccccc----c
Q 020038 177 TFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVY----D 250 (332)
Q Consensus 177 IiRTA~afGv~~Vii~~~~~~~~~~~~~--raS~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~i~a~~~~~~~~~l~----~ 250 (332)
+.-||-|||++++++.+.+ ......+. -..-|+.|++. ..++..+++.+ |..++-+++=+ .++. +
T Consensus 24 V~LtARAfGA~~iil~~~D-~~v~esv~dV~~rwGG~F~ve---~~~w~~~i~~w---~G~VVHLTMYG--~~i~dvi~~ 94 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTED-KSVFESVRDVVERWGGDFFIK---AVSWKKLLREF---DGLKVHLTMYG--IPLPQKLEE 94 (178)
T ss_dssp HHHHHHHTTCSEEEESSCC-HHHHHHHHHHHHHHCSCCEEE---ECCHHHHHHHC---CSEEEEEEEEE--EEHHHHHHH
T ss_pred HHHHHHHhCCCeeEEeCCC-HHHHHHHHHHHHhcCCceEEE---ecCHHHHHHHc---CCEEEEEecCC--CchHHHHHH
Confidence 4568999999999877641 11111221 22357777766 36777777776 66776666532 2332 2
Q ss_pred cCCCCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 020038 251 MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (332)
Q Consensus 251 ~~~~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~ 305 (332)
+.-.++..+|+|.|. ++.++-+.||+.|.|=-.+.-+ ..|.||+|-.++
T Consensus 95 Ir~~~~iLvVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~ 143 (178)
T 2o3a_A 95 IKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE----VAALAVFLDRVL 143 (178)
T ss_dssp HHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCH----HHHHHHHHHHHT
T ss_pred hhcCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhh
Confidence 233678999999997 9999999999999996544332 356778887776
No 19
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=93.16 E-value=0.41 Score=42.74 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=66.1
Q ss_pred CChHHHHHHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHH----HHHhCCcEEEECCCCCCCcccHHH
Q 020038 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE----ALSLSDLRCSIPMKGMVDSFNVSV 295 (332)
Q Consensus 220 ~nl~~~l~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~----~le~cD~~V~IPm~G~v~SLNVsv 295 (332)
.++++.++++++.| ++|-++.++ .++....++...++|+|- ..|++++ +.+.++..++| |. .+|=.++
T Consensus 112 ~sle~ll~e~~~~~-~v~~L~E~G--~~i~~~~~~~~~~fvlGd-H~~f~~e~~~~l~~~~~~~iSi---gp-~~L~A~~ 183 (197)
T 2qmm_A 112 KGLEELIEELSEKY-SIIYLKEDG--VDISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAALKLSL---SP-LSLLAEQ 183 (197)
T ss_dssp CCHHHHHHHHHHHS-EEEEEEEEE--EEGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSEEEEC---CS-SCCCHHH
T ss_pred CCHHHHHHHhhcCC-cEEEEcCCC--CCCchhhcCCCCEEEEeC-CCCCCHHHHHHHHHhcCeEEEE---CC-chhHHHH
Confidence 68889999998665 477777764 567777777788999999 8899999 78888999998 22 7999999
Q ss_pred HHHHHHHHHHHhh
Q 020038 296 AAGILMHHAVCDR 308 (332)
Q Consensus 296 AaaI~Lye~~rqR 308 (332)
++.++-|++-+.|
T Consensus 184 vi~~vh~~ld~~~ 196 (197)
T 2qmm_A 184 CVVIAHHHLDRLQ 196 (197)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999999986544
No 20
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=90.49 E-value=1.6 Score=39.25 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=65.0
Q ss_pred CChHHHHHHHHhCCcEEEEEecCCCcccccccCCCCCeEEEEcCCCCCCCHH---H-HHhCCcEEEECCCCCCCcccHHH
Q 020038 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE---A-LSLSDLRCSIPMKGMVDSFNVSV 295 (332)
Q Consensus 220 ~nl~~~l~~Lk~~G~~i~a~~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~~---~-le~cD~~V~IPm~G~v~SLNVsv 295 (332)
.++++.++++.+.|..+|-++.++ .++.+..+ ...++|+|- ..|++++ + .+.++..++|= . .+|=.++
T Consensus 123 ~sle~ll~e~~~~~~~v~~L~E~G--~~i~~~~~-~~~~fvlGd-H~~f~~e~~~~L~~~~~~~iSig---p-~~L~A~h 194 (211)
T 3aia_A 123 LGFRNLVLEKLEEGKNIYYLHMNG--EDVENVDI-ENPVFIIGD-HIGIGEEDERFLDEIKAKRISLS---P-LELHANH 194 (211)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEEE--EEGGGCCC-CSEEEEEEC-SSCSCHHHHHHHHHTTCEEEECC---S-SCCCHHH
T ss_pred CCHHHHHHHHhhcCCcEEEEcCCC--CCCccccc-CCcEEEEEC-CCCCCHHHHHHHHhhCCeEEEEC---C-cchHHHH
Confidence 688899999988887788888765 56666666 678999999 7799999 5 56778888882 2 7999999
Q ss_pred HHHHHHHHHHHh
Q 020038 296 AAGILMHHAVCD 307 (332)
Q Consensus 296 AaaI~Lye~~rq 307 (332)
++.++-+|+-+.
T Consensus 195 vi~~vh~~LD~~ 206 (211)
T 3aia_A 195 CITIIHNVLDKK 206 (211)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhccc
Confidence 999999998654
No 21
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=81.83 E-value=6.5 Score=35.24 Aligned_cols=114 Identities=10% Similarity=-0.007 Sum_probs=71.0
Q ss_pred CcCcHHHHHHHHHHHCCCeEEEecCCCCccCccceeccCCcceeeeeeEeCChHHHHHHHHhCCcEEEEEecCCCccccc
Q 020038 170 DFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVY 249 (332)
Q Consensus 170 dP~NlGaIiRTA~afGv~~Vii~~~~~~~~~~~~~raS~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~i~a~~~~~~~~~l~ 249 (332)
|-.|+++++|-|-.-+... .. ..-..+..|- -+ +-.++++.++++++.|. +|-++.++ .++.
T Consensus 86 DErs~a~lI~kAL~~~~~~------~~----~~~~~~~pGi----~v-~~~~fe~ll~e~~~~~~-ly~L~e~G--~di~ 147 (208)
T 2qwv_A 86 HEAALIALLVKALDASVGM------GK----EQTRVVQPGL----TV-RTISFEALLGELAEHHS-LYMMDKKG--DSIR 147 (208)
T ss_dssp SHHHHHHHHHHHHHHTTTC------CT----TCEEEEETTE----EE-ECCCHHHHHHHHHTTSE-EEEEEEEE--EETT
T ss_pred chHHHHHHHHHHHHhcccc------cc----ccccccCCCE----EE-ecCCHHHHHHHHHhcCc-EEEEeCCC--cCHh
Confidence 6667888888887665411 00 0111222221 11 22688899999988864 88787764 7899
Q ss_pred ccCCCCCeEEEEcCCCCCCCHHHHHh----CCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 020038 250 DMDWSCPTAIVVGNENRGVSDEALSL----SDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (332)
Q Consensus 250 ~~~~~~~~aLV~GnE~~GLs~~~le~----cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~r 306 (332)
++.++...++|+| ...|++++..+. .+..|+|- =.+|=.+++..++-+|+-+
T Consensus 148 ~~~~~~~~~FvLg-DH~g~~~eee~~L~~~~~~~iSlG----P~~l~A~hcI~~vhn~LD~ 203 (208)
T 2qwv_A 148 DIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISLG----PKMLFASQCVTLIHNEIDH 203 (208)
T ss_dssp TSCCCSSEEEEEC-C----------CTTTTTCEEEECC----SSCCCHHHHHHHHHHHHHH
T ss_pred hccCCCCCEEEEc-CCCCCCHHHHHHHHhcCCeEEEeC----chHHHHHHHHHHHHHHHhc
Confidence 9998888999999 589999986543 35667772 2589999999999999853
No 22
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=80.54 E-value=34 Score=31.28 Aligned_cols=142 Identities=8% Similarity=0.051 Sum_probs=77.2
Q ss_pred EEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecC-CCCccC-c-c-------ceeccCC-----cceeeeee-EeCChHHH
Q 020038 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRY-R-E-------NRHVSMG-----AEKWLDIE-LWDAPREC 225 (332)
Q Consensus 162 ~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~-~~~~~~-~-~-------~~raS~G-----a~~~v~v~-~~~nl~~~ 225 (332)
+.++-.+-.+..+=-+++-|--+||+.|+.+.. ++.... . + ..+.... .-.++|-+ ...++.++
T Consensus 83 v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~ 162 (268)
T 1vhk_A 83 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQL 162 (268)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHH
T ss_pred EEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCCHHHH
Confidence 445567778899999999999999999977643 232111 0 0 0111111 12345643 45688888
Q ss_pred HHHHHhCCcEEEEEecCCC-cccc------cccCCCCCeEEEEcCCCCCCCHHHHHhCCc--EEEECCCCC-CCcccHHH
Q 020038 226 FNVLRSRGYRIATTHVGMD-AISV------YDMDWSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGM-VDSFNVSV 295 (332)
Q Consensus 226 l~~Lk~~G~~i~a~~~~~~-~~~l------~~~~~~~~~aLV~GnE~~GLs~~~le~cD~--~V~IPm~G~-v~SLNVsv 295 (332)
++.....+..+++-..... ..++ .++...++++|++|.|| |++++.++..-. ...+-+-.. ..+=-+++
T Consensus 163 l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i 241 (268)
T 1vhk_A 163 LQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGPRILRTETAPL 241 (268)
T ss_dssp HHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTTCEEECCCSSCCCTTTHHH
T ss_pred HhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCCeeehHHHHH
Confidence 8876554555554332110 1123 23322237899999998 999987664422 234444333 23333443
Q ss_pred -HHHHHHHHH
Q 020038 296 -AAGILMHHA 304 (332)
Q Consensus 296 -AaaI~Lye~ 304 (332)
|+++++|.+
T Consensus 242 ~als~l~~~~ 251 (268)
T 1vhk_A 242 YALSAISYQT 251 (268)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 335555554
No 23
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=78.58 E-value=9 Score=35.05 Aligned_cols=148 Identities=10% Similarity=0.078 Sum_probs=77.3
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecC-CCCccCccc---eeccC-----Ccceeeeee-EeCChHHHHHHHH
Q 020038 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRYREN---RHVSM-----GAEKWLDIE-LWDAPRECFNVLR 230 (332)
Q Consensus 161 l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~-~~~~~~~~~---~raS~-----Ga~~~v~v~-~~~nl~~~l~~Lk 230 (332)
+.|++--+....-+=-+++-|--+||+.|+.+.. ++.....+. .+... ..-.++|-+ ...++.++++.+.
T Consensus 79 i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~~~k~eRw~~I~~eAaeQs~R~~~P~v~~~~~~~~~l~~~~ 158 (257)
T 3kw2_A 79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTP 158 (257)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSC
T ss_pred eEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhhhhhHHHHHHHHHHHHHHcCCCcCCEecCcCCHHHHHhhcc
Confidence 4444432222344667799999999999986532 232211111 11111 112456643 4457778887755
Q ss_pred hCCcEEEEEecCC------CcccccccC--CCCCeEEEEcCCCCCCCHHHHHhCCc--EEEECCCCCC-CcccHH-HHHH
Q 020038 231 SRGYRIATTHVGM------DAISVYDMD--WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMV-DSFNVS-VAAG 298 (332)
Q Consensus 231 ~~G~~i~a~~~~~------~~~~l~~~~--~~~~~aLV~GnE~~GLs~~~le~cD~--~V~IPm~G~v-~SLNVs-vAaa 298 (332)
..+..+++..... ...++.+.. ..++++|++|.|| |++++.++.+-. ...+-.-..| .+=.++ +|++
T Consensus 159 ~~~~~li~~~~e~~~~~~~~~~~l~~~~~~~~~~v~l~IGPEG-Gfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~als 237 (257)
T 3kw2_A 159 KAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQ 237 (257)
T ss_dssp TTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSCCCHHHHHHHHHH
T ss_pred ccCCEEEEEcccccccccccccchhHhhccCCCcEEEEECCCC-CCCHHHHHHHHHCCCEEEcCCCCcchHHHHHHHHHH
Confidence 5565555542221 123343322 1467999999998 999988776532 1334443333 222222 3345
Q ss_pred HHHHHHHHhhh
Q 020038 299 ILMHHAVCDRA 309 (332)
Q Consensus 299 I~Lye~~rqR~ 309 (332)
++.|..-+-|+
T Consensus 238 ~~~~~~~~~~~ 248 (257)
T 3kw2_A 238 WIHTLQACYRI 248 (257)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHhhcccc
Confidence 55555444444
No 24
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=65.11 E-value=23 Score=32.19 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=72.8
Q ss_pred EEEeCCCCcCcHHHHHHHHHHHCCCeEEEecC-CCCcc-Cc-c-------ceeccCCcc-----eeeeee-EeCChHHHH
Q 020038 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKR-YR-E-------NRHVSMGAE-----KWLDIE-LWDAPRECF 226 (332)
Q Consensus 163 vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~-~~~~~-~~-~-------~~raS~Ga~-----~~v~v~-~~~nl~~~l 226 (332)
.+.-.+-.+..+=-+++-|--+||+.|+.+.. ++... .. + ..+....|. .++|-+ ...++.+++
T Consensus 83 ~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~l 162 (257)
T 1vhy_A 83 HLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWC 162 (257)
T ss_dssp EEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHH
T ss_pred EEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCHHHHH
Confidence 34446667788899999999999999977643 33211 10 0 011222222 345543 334666666
Q ss_pred HHHHhCCcEEEEEecCCCcccccccC--CCCCeEEEEcCCCCCCCHHHHHhCCc--EEEECCCCCC-CcccHHHH-HHHH
Q 020038 227 NVLRSRGYRIATTHVGMDAISVYDMD--WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMV-DSFNVSVA-AGIL 300 (332)
Q Consensus 227 ~~Lk~~G~~i~a~~~~~~~~~l~~~~--~~~~~aLV~GnE~~GLs~~~le~cD~--~V~IPm~G~v-~SLNVsvA-aaI~ 300 (332)
+... .+..+++ .... ..++.++. ..++++|++|.|| |++++.++.... ...+-.-..| .+=-++++ ++++
T Consensus 163 ~~~~-~~~~l~~-~~~~-~~~l~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i~als~l 238 (257)
T 1vhy_A 163 AEND-GALKLNL-HPRA-HYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISAL 238 (257)
T ss_dssp TCCS-SCEEEEE-CTTC-CCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHHH
T ss_pred hcCC-CCcEEEE-cCCC-ccchhhhhccCCCeEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCCeeehHHHHHHHHHHH
Confidence 5221 2444443 3222 23343332 2347999999998 999987665422 2344443333 33334433 3445
Q ss_pred HHHHHHhhhhccCCC
Q 020038 301 MHHAVCDRATRLVVV 315 (332)
Q Consensus 301 Lye~~rqR~~~~~~~ 315 (332)
+|.+ .+...+.|.|
T Consensus 239 ~~~~-~~~~~~~~~~ 252 (257)
T 1vhy_A 239 QICF-GDLGEEGGSH 252 (257)
T ss_dssp HHHH-SGGGCCC---
T ss_pred HHHh-chhhhccCcc
Confidence 5543 2333445544
No 25
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=62.22 E-value=4.7 Score=34.44 Aligned_cols=73 Identities=10% Similarity=0.134 Sum_probs=45.6
Q ss_pred HHHHHHhCCcEEEEEecCCCcccccccCC----------CCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHH
Q 020038 225 CFNVLRSRGYRIATTHVGMDAISVYDMDW----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVS 294 (332)
Q Consensus 225 ~l~~Lk~~G~~i~a~~~~~~~~~l~~~~~----------~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVs 294 (332)
.++.+++ + .++++|..+. .+....+ ...+++|+|. ..|+++++++.||..+++-- . .|.=-
T Consensus 60 il~~i~~-~-~vi~Ld~~Gk--~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~--m--T~pHq 130 (155)
T 1ns5_A 60 MLAAAGK-N-RIVTLDIPGK--PWDTPQLAAELERWKLDGRDVSLLIGG-PEGLSPACKAAAEQSWSLSA--L--TLPHP 130 (155)
T ss_dssp HHHHHTT-S-EEEEEEEEEE--CCCHHHHHHHHHHHHHHCSCEEEEECB-TTBCCHHHHHHCSEEECCCS--S--CCCHH
T ss_pred HHHhcCC-C-cEEEEcCCCC--cCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccC--C--CCcHH
Confidence 3444443 5 4888887653 3332221 1479999999 88999999999999876521 1 23333
Q ss_pred HHHHHHHHHHHH
Q 020038 295 VAAGILMHHAVC 306 (332)
Q Consensus 295 vAaaI~Lye~~r 306 (332)
.+--|++=.++|
T Consensus 131 l~RliL~EQiYR 142 (155)
T 1ns5_A 131 LVRVLVAESLYR 142 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555555
No 26
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=60.69 E-value=16 Score=33.20 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=77.7
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEecC-CCCccCc--c-------ceeccCCcc-----eeeeee-EeCChHH
Q 020038 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRYR--E-------NRHVSMGAE-----KWLDIE-LWDAPRE 224 (332)
Q Consensus 161 l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~~-~~~~~~~--~-------~~raS~Ga~-----~~v~v~-~~~nl~~ 224 (332)
-+.++-.+-.+..+=-|++-|--+||+.|+.+.. ++...+. + ..+.+..|. .++|-+ ...++.+
T Consensus 79 ~v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~~~~ 158 (251)
T 4e8b_A 79 HIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEA 158 (251)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEEHHH
T ss_pred eEEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCCHHH
Confidence 3445667788899999999999999999986532 3322111 0 011112121 345533 3345555
Q ss_pred HHHHHHhCCcEEEEEecCCCcccccccCC-CCCeEEEEcCCCCCCCHHHHHhCCc--EEEECCCCCC-CcccHHH-HHHH
Q 020038 225 CFNVLRSRGYRIATTHVGMDAISVYDMDW-SCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMV-DSFNVSV-AAGI 299 (332)
Q Consensus 225 ~l~~Lk~~G~~i~a~~~~~~~~~l~~~~~-~~~~aLV~GnE~~GLs~~~le~cD~--~V~IPm~G~v-~SLNVsv-AaaI 299 (332)
+++... .+..++... . ...++.+.+. .+++++++|.|| |++++.++.... ...+-+-..| .+=.+++ |.++
T Consensus 159 ~l~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~Gf~~vsLG~rILRtETA~i~als~ 234 (251)
T 4e8b_A 159 WCAEQD-EGLKLNLHP-R-ASNSINTLPLPVERVRLLIGPEG-GLSADEIAMTARYQFTDILLGPRVLRTETTALTAITA 234 (251)
T ss_dssp HHHCCC-SSEEEEECT-T-CSCBGGGSCSCCCEEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSCCCHHHHHHHHHHH
T ss_pred HHhhcC-cCceEeech-h-hhCchhhccccCCcEEEEECCCC-CCCHHHHHHHHHCCCEEecCCCCceeHHHHHHHHHHH
Confidence 554432 344443332 2 2445655554 356899999998 999987765532 2445443333 3333333 3355
Q ss_pred HHHHH
Q 020038 300 LMHHA 304 (332)
Q Consensus 300 ~Lye~ 304 (332)
++|++
T Consensus 235 l~~~~ 239 (251)
T 4e8b_A 235 LQVRF 239 (251)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55543
No 27
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=58.11 E-value=3.3 Score=35.72 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=44.4
Q ss_pred CcEEEEEecCCCcccccccCC----------CCCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHH
Q 020038 233 GYRIATTHVGMDAISVYDMDW----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (332)
Q Consensus 233 G~~i~a~~~~~~~~~l~~~~~----------~~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Ly 302 (332)
+..++++|..+ +.+....+ ...+++|+|. ..|+++++++.||..+++--- .|.=-.+--|++=
T Consensus 65 ~~~vI~LD~~G--k~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl~~~v~~rAd~~lSlS~m----TfpHqL~RliL~E 137 (163)
T 1o6d_A 65 GSFVMVMDKRG--EEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHRVFSLSKM----TFTHGMTVLIVLE 137 (163)
T ss_dssp TCEEEEEEEEE--EECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSEEEECCSS----CCCHHHHHHHHHH
T ss_pred CCEEEEEcCCC--CcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccCC----CCcHHHHHHHHHH
Confidence 44577888764 33332221 1479999999 889999999999998876321 2344455556655
Q ss_pred HHHHh
Q 020038 303 HAVCD 307 (332)
Q Consensus 303 e~~rq 307 (332)
.++|-
T Consensus 138 QiYRA 142 (163)
T 1o6d_A 138 QIFRA 142 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 28
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=52.99 E-value=8.9 Score=33.00 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=41.9
Q ss_pred CcEEEEEecCCCcccccccC---------CC--CCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHH
Q 020038 233 GYRIATTHVGMDAISVYDMD---------WS--CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (332)
Q Consensus 233 G~~i~a~~~~~~~~~l~~~~---------~~--~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~L 301 (332)
+-.++++|..+. .+.... .. ..+++|+|. ..|+++++++.||..+++-- . .|.=-.+--|++
T Consensus 74 ~~~vI~LD~~Gk--~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~--m--TfpHqL~RliL~ 146 (163)
T 4fak_A 74 QSTVITLEIQGK--MLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGLHKDVLQRSNYALSFSK--M--TFPHQMMRVVLI 146 (163)
T ss_dssp TSEEEEEEEEEE--ECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBCCHHHHHHCSEEEESCS--S--CCCHHHHHHHHH
T ss_pred CCEEEEEcCCCC--cCCHHHHHHHHHHHHhcCCcceEEEEEC-CCccCHHHHHhcCceEEEec--C--CCCHHHHHHHHH
Confidence 446777887653 332221 12 469999999 78999999999999887631 1 223333444444
Q ss_pred HHHHH
Q 020038 302 HHAVC 306 (332)
Q Consensus 302 ye~~r 306 (332)
=.++|
T Consensus 147 EQlYR 151 (163)
T 4fak_A 147 EQVYR 151 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45554
No 29
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=40.91 E-value=20 Score=30.87 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCCCCHHHHHhCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 020038 255 CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (332)
Q Consensus 255 ~~~aLV~GnE~~GLs~~~le~cD~~V~IPm~G~v~SLNVsvAaaI~Lye~~r 306 (332)
..+++|+|. ..|+++++++.||..+++-- . .|.=-.+--|++=.++|
T Consensus 101 ~~i~FvIGG-a~Gl~~~v~~rA~~~lSlS~--m--TfpHqL~RliL~EQiYR 147 (167)
T 1to0_A 101 SKVTFVIGG-SLGLSDTVMKRADEKLSFSK--M--TFPHQLMRLILVEQIYR 147 (167)
T ss_dssp CEEEEEECC-SSCCCHHHHHHCSEEEESCS--S--CCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEC-CCCCCHHHHHhhCcEEEccC--C--CCcHHHHHHHHHHHHHH
Confidence 358999999 88999999999999887632 1 23334455555555665
No 30
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=36.69 E-value=23 Score=21.29 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 020038 293 VSVAAGILMHHAV 305 (332)
Q Consensus 293 VsvAaaI~Lye~~ 305 (332)
+++|+|+++|-|.
T Consensus 13 iav~aaVllylW~ 25 (26)
T 3j1r_A 13 IAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5899999999875
No 31
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=36.02 E-value=74 Score=26.14 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=32.0
Q ss_pred eeEeCChHHHHHHHHhCCcEEEEEecCCCc------ccccccCCCCCeEEEEcCCC
Q 020038 216 IELWDAPRECFNVLRSRGYRIATTHVGMDA------ISVYDMDWSCPTAIVVGNEN 265 (332)
Q Consensus 216 v~~~~nl~~~l~~Lk~~G~~i~a~~~~~~~------~~l~~~~~~~~~aLV~GnE~ 265 (332)
+..++...++|+.|+++|++++.++..... .-+....+..-.-.|++++.
T Consensus 33 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~ 88 (189)
T 3ib6_A 33 VVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNS 88 (189)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCT
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccc
Confidence 345688899999999999999877754321 11233334444455666654
No 32
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=24.36 E-value=80 Score=28.98 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=57.0
Q ss_pred eccCCcceeeeeeEeCChHHHHHHHHhCCcEEEEEecCCCccccccc----CCCCCeEEEEcCCCCC---CCHHHHHhCC
Q 020038 205 HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDM----DWSCPTAIVVGNENRG---VSDEALSLSD 277 (332)
Q Consensus 205 raS~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~i~a~~~~~~~~~l~~~----~~~~~~aLV~GnE~~G---Ls~~~le~cD 277 (332)
++.-|....+.+.. ..+.+.+ ..|..+++++..+....+.++ .-..+.++++|.=.+| .+.+ ..|
T Consensus 152 ~~~~~~~~LLkvik-n~l~d~L----p~~~~kI~ls~~g~~v~~~~~~~~l~~~~~i~vvVGafahG~~~f~~~---~~~ 223 (253)
T 3oii_A 152 RSVNSEEKLLKVIK-NPITDHL----PTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADE---YVD 223 (253)
T ss_dssp EETTEEEEEEEEEC-SCGGGTS----CSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCSCTTTT---TCS
T ss_pred cCCCCCCeeEEEEc-CCHHHhC----CCCCeEEEEccCCCccCHHHHHHhcccCCCeEEEEeeeCCCCCcccch---hcc
Confidence 44444444555554 3343333 456678889877644443332 2235789999999999 4443 567
Q ss_pred cEEEECCCCCCCcccHHHHHHHHHHHHH
Q 020038 278 LRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (332)
Q Consensus 278 ~~V~IPm~G~v~SLNVsvAaaI~Lye~~ 305 (332)
..++|-- .+|-.+++++.++.++-
T Consensus 224 e~iSIs~----ypLsa~~~c~kic~a~E 247 (253)
T 3oii_A 224 EKVGLSN----YPLSASVACSKFCHGAE 247 (253)
T ss_dssp EEEBSCS----SCCCHHHHHHHHHHHHH
T ss_pred eeEEEeC----CChhHHHHHHHHHHHHH
Confidence 8888853 48888999999887764
No 33
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=22.45 E-value=58 Score=30.07 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHCCCeEEEecC
Q 020038 173 NVSATFRSADALGVQSVHVVSC 194 (332)
Q Consensus 173 NlGaIiRTA~afGv~~Vii~~~ 194 (332)
=+|-|+|+|..|+|+.|+|.+.
T Consensus 27 ~~gqIARAaaIF~VdEIvVy~d 48 (268)
T 1k3r_A 27 KVVLIARAASIFGVKRIVIYHD 48 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHhccccEEEEEeC
Confidence 4799999999999999998754
No 34
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.15 E-value=2.6e+02 Score=24.08 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=28.2
Q ss_pred HHHHHHhcCCccEEEEEeCCCCcCcHHHHHHHHHHHCCCeEEEec
Q 020038 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193 (332)
Q Consensus 149 ~l~~v~~~~~~~l~vVLd~i~dP~NlGaIiRTA~afGv~~Vii~~ 193 (332)
.+++.+++....+.++.+.-.|+...-..++.+..-++++||+..
T Consensus 25 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 69 (305)
T 3g1w_A 25 GFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISA 69 (305)
T ss_dssp HHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 344444443334433344556777777888888888888887754
Done!