Query 020039
Match_columns 332
No_of_seqs 185 out of 528
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05712 MRG: MRG; InterPro: 100.0 1.3E-46 2.8E-51 340.2 13.1 157 160-316 18-194 (194)
2 KOG3001 Dosage compensation re 100.0 9.3E-45 2E-49 356.8 9.7 279 49-327 5-388 (391)
3 PF11717 Tudor-knot: RNA bindi 99.8 1.3E-20 2.8E-25 137.9 6.8 53 52-104 1-54 (55)
4 PLN00104 MYST -like histone ac 99.6 9E-15 1.9E-19 146.1 9.6 54 51-104 53-112 (450)
5 smart00561 MBT Present in Dros 97.7 0.00013 2.8E-09 59.3 7.3 56 46-105 22-82 (96)
6 smart00333 TUDOR Tudor domain. 97.6 0.00015 3.2E-09 52.3 5.3 51 51-106 2-53 (57)
7 cd00024 CHROMO Chromatin organ 97.3 0.00029 6.3E-09 50.2 3.5 38 69-106 6-45 (55)
8 smart00298 CHROMO Chromatin or 97.2 0.00031 6.6E-09 49.9 2.8 37 69-105 5-42 (55)
9 smart00743 Agenet Tudor-like d 97.1 0.0012 2.7E-08 48.5 5.9 50 51-103 2-53 (61)
10 PTZ00064 histone acetyltransfe 96.9 0.00034 7.4E-09 71.3 1.5 27 79-105 147-173 (552)
11 COG5027 SAS2 Histone acetyltra 96.7 0.0013 2.7E-08 64.5 3.4 53 54-106 8-60 (395)
12 cd04508 TUDOR Tudor domains ar 96.6 0.0053 1.2E-07 42.6 5.1 45 55-104 1-47 (48)
13 PF06003 SMN: Survival motor n 96.1 0.011 2.4E-07 56.4 6.2 58 48-109 65-124 (264)
14 PF05641 Agenet: Agenet domain 96.1 0.014 3E-07 44.2 5.5 52 52-106 1-63 (68)
15 PF09465 LBR_tudor: Lamin-B re 96.1 0.013 2.8E-07 42.9 4.9 38 49-88 3-42 (55)
16 cd05162 PWWP The PWWP domain, 96.0 0.013 2.8E-07 46.2 4.8 58 52-111 1-66 (87)
17 PF00855 PWWP: PWWP domain; I 95.5 0.025 5.4E-07 43.9 4.7 57 52-111 1-62 (86)
18 cd05834 HDGF_related The PWWP 94.9 0.04 8.6E-07 43.6 4.3 57 51-109 2-60 (83)
19 cd05837 MSH6_like The PWWP dom 94.9 0.039 8.5E-07 45.8 4.4 59 51-110 2-71 (110)
20 PF00385 Chromo: Chromo (CHRro 94.7 0.073 1.6E-06 38.0 5.0 38 69-106 4-44 (55)
21 PLN03239 histone acetyltransfe 94.5 0.013 2.9E-07 57.7 0.7 22 83-104 1-22 (351)
22 smart00293 PWWP domain with co 94.1 0.093 2E-06 39.0 4.5 54 52-107 1-63 (63)
23 KOG2748 Uncharacterized conser 93.1 0.016 3.4E-07 56.8 -1.5 42 65-106 9-51 (369)
24 PF02820 MBT: mbt repeat; Int 92.5 0.37 8.1E-06 36.8 5.6 39 64-106 12-52 (73)
25 PF07039 DUF1325: SGF29 tudor- 90.6 0.46 1E-05 40.7 4.8 45 47-92 67-113 (130)
26 cd05840 SPBC215_ISWI_like The 89.2 0.69 1.5E-05 37.3 4.6 59 52-112 1-70 (93)
27 PF15057 DUF4537: Domain of un 88.9 0.93 2E-05 38.4 5.4 58 51-111 55-117 (124)
28 cd05835 Dnmt3b_related The PWW 87.4 0.8 1.7E-05 36.3 3.8 55 52-108 1-60 (87)
29 cd05836 N_Pac_NP60 The PWWP do 84.3 1.8 3.9E-05 34.3 4.4 56 52-109 1-62 (86)
30 cd05838 WHSC1_related The PWWP 81.4 2.3 5E-05 34.3 4.1 55 53-109 2-65 (95)
31 KOG4327 mRNA splicing protein 78.2 2.1 4.5E-05 39.3 3.1 42 50-93 66-109 (218)
32 cd06080 MUM1_like Mutated mela 77.8 6.9 0.00015 30.8 5.6 53 52-107 1-54 (80)
33 cd05841 BS69_related The PWWP 73.4 5.6 0.00012 31.6 4.0 53 52-109 7-60 (83)
34 PF15057 DUF4537: Domain of un 67.4 11 0.00024 31.8 4.9 47 55-107 1-49 (124)
35 cd05839 BR140_related The PWWP 67.2 8.1 0.00018 32.3 3.9 59 52-111 1-83 (111)
36 KOG3038 Histone acetyltransfer 67.1 9.4 0.0002 36.4 4.7 39 48-87 195-235 (264)
37 cd04402 RhoGAP_ARHGAP20 RhoGAP 66.3 58 0.0013 29.1 9.6 140 169-315 14-191 (192)
38 PF08940 DUF1918: Domain of un 66.0 8.6 0.00019 28.6 3.4 36 53-88 4-42 (58)
39 cd04404 RhoGAP-p50rhoGAP RhoGA 63.6 1E+02 0.0022 27.5 10.7 137 169-312 22-195 (195)
40 KOG3766 Polycomb group protein 57.1 17 0.00037 37.8 5.0 49 51-102 200-252 (478)
41 cd04390 RhoGAP_ARHGAP22_24_25 52.1 1.8E+02 0.0038 26.1 10.7 19 294-312 181-199 (199)
42 PHA02763 hypothetical protein; 50.0 2.2 4.7E-05 34.2 -2.2 53 51-104 27-80 (102)
43 PF00567 TUDOR: Tudor domain; 48.8 46 0.001 26.0 5.3 52 51-107 51-104 (121)
44 KOG3001 Dosage compensation re 44.7 4 8.7E-05 41.3 -1.8 66 47-112 43-142 (391)
45 cd04716 BAH_plantDCM_I BAH, or 42.1 43 0.00094 28.3 4.3 34 50-83 2-37 (122)
46 PF10781 DSRB: Dextransucrase 37.9 72 0.0016 23.7 4.2 38 53-90 2-40 (62)
47 KOG2747 Histone acetyltransfer 36.7 8.3 0.00018 39.0 -1.0 31 69-99 38-69 (396)
48 PRK10708 hypothetical protein; 35.3 86 0.0019 23.3 4.3 38 53-90 2-40 (62)
49 cd04714 BAH_BAHCC1 BAH, or Bro 34.2 70 0.0015 26.7 4.4 29 51-79 3-34 (121)
50 smart00739 KOW KOW (Kyprides, 31.2 96 0.0021 18.3 3.6 24 52-75 2-26 (28)
51 PF11390 FdsD: NADH-dependant 31.1 68 0.0015 24.0 3.3 33 268-300 1-33 (61)
52 PF13495 Phage_int_SAM_4: Phag 31.1 77 0.0017 23.7 3.8 44 195-239 38-81 (85)
53 smart00439 BAH Bromo adjacent 30.0 1.3E+02 0.0028 23.9 5.2 29 52-80 2-33 (120)
54 KOG3766 Polycomb group protein 29.4 40 0.00086 35.1 2.5 52 46-101 302-356 (478)
55 PF02839 CBM_5_12: Carbohydrat 28.9 40 0.00087 22.4 1.7 21 48-70 6-26 (41)
56 cd04370 BAH BAH, or Bromo Adja 27.9 96 0.0021 24.6 4.1 30 50-79 2-36 (123)
57 PRK14752 delta-hemolysin; Prov 26.7 76 0.0016 21.7 2.6 37 269-311 5-41 (44)
58 PRK00236 xerC site-specific ty 26.3 4.7E+02 0.01 23.4 9.1 24 284-307 69-92 (297)
59 PF12148 DUF3590: Protein of u 26.0 1.8E+02 0.0039 23.2 5.1 35 58-92 2-42 (85)
60 PF02559 CarD_CdnL_TRCF: CarD- 25.9 98 0.0021 24.4 3.7 50 51-103 1-51 (98)
61 KOG3026 Splicing factor SPF30 25.7 74 0.0016 30.2 3.3 30 51-80 90-121 (262)
62 PF15136 UPF0449: Uncharacteri 25.4 55 0.0012 26.8 2.1 21 191-211 7-27 (97)
63 cd04717 BAH_polybromo BAH, or 24.8 1.2E+02 0.0026 24.9 4.2 29 50-78 2-33 (121)
64 TIGR00922 nusG transcription t 24.6 2.1E+02 0.0046 24.8 6.0 40 50-89 118-158 (172)
65 PF07154 DUF1392: Protein of u 24.6 1.7E+02 0.0037 25.7 5.1 36 50-85 86-122 (150)
66 cd04375 RhoGAP_DLC1 RhoGAP_DLC 23.9 5.7E+02 0.012 23.4 11.5 17 297-313 199-215 (220)
67 cd04385 RhoGAP_ARAP RhoGAP_ARA 23.3 5.2E+02 0.011 22.8 8.6 127 167-304 12-141 (184)
68 PF10377 ATG11: Autophagy-rela 23.2 1.2E+02 0.0027 25.7 4.0 43 51-99 42-93 (129)
69 KOG2039 Transcriptional coacti 23.0 1.6E+02 0.0035 33.0 5.9 55 50-109 694-750 (875)
70 cd04715 BAH_Orc1p_like BAH, or 23.0 1.8E+02 0.0039 25.7 5.1 28 51-78 29-57 (159)
71 KOG2573 Ribosome biogenesis pr 22.2 1.9E+02 0.0042 29.7 5.7 77 169-249 70-146 (498)
72 PRK05609 nusG transcription an 21.9 2.7E+02 0.0059 24.2 6.2 40 50-89 125-165 (181)
73 cd04386 RhoGAP_nadrin RhoGAP_n 21.8 5.8E+02 0.013 22.8 11.1 57 259-315 125-202 (203)
74 PF05372 Delta_lysin: Delta ly 20.9 1.5E+02 0.0032 18.2 2.8 21 291-311 3-23 (25)
75 PF06543 Lac_bphage_repr: Lact 20.9 31 0.00067 24.7 -0.1 9 93-101 19-27 (49)
76 cd04720 BAH_Orc1p_Yeast BAH, o 20.9 1.6E+02 0.0035 26.4 4.5 50 49-99 50-101 (179)
77 KOG4645 MAPKKK (MAP kinase kin 20.7 6.3E+02 0.014 30.1 9.8 64 190-253 607-695 (1509)
78 cd04721 BAH_plant_1 BAH, or Br 20.6 1.7E+02 0.0036 24.9 4.3 32 49-80 5-37 (130)
79 PF10496 Syntaxin-18_N: SNARE- 20.3 81 0.0018 24.5 2.2 25 289-313 44-68 (87)
80 PF02899 Phage_int_SAM_1: Phag 20.1 3.6E+02 0.0077 19.7 10.0 82 204-306 1-82 (84)
81 cd04381 RhoGap_RalBP1 RhoGap_R 20.0 3.3E+02 0.0072 24.0 6.4 46 268-313 131-180 (182)
No 1
>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.
Probab=100.00 E-value=1.3e-46 Score=340.21 Aligned_cols=157 Identities=48% Similarity=0.760 Sum_probs=127.2
Q ss_pred cCCCceeEEeCChhHHHHHHHHhHhhhhCCceecCCCCCCHHHHHHHHHHhhhccCCc--h-----hhhHHHHHHHHHHH
Q 020039 160 LQMENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGL--V-----ADSTGEIVKGLRCY 232 (332)
Q Consensus 160 ~~~~~~i~I~iP~~Lk~iLvdD~e~Itk~~kL~~LPa~~tV~~IL~~Y~~~~~~~~~~--~-----~~~~~E~~~Gl~~Y 232 (332)
....+++.|+||..||.+|||||++|+++++|++|||++||++||++|+++....... . ...++|+++||++|
T Consensus 18 ~~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~~~~~~~~~e~~~Gl~~y 97 (194)
T PF05712_consen 18 SEEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESAEQERDLLKEVADGLRDY 97 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---THH--HHHHHHHHHHHHH
T ss_pred cccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHH
Confidence 3555789999999999999999999999999999999999999999999999743211 1 14689999999999
Q ss_pred HhhhcCcccCChhhHhhHHHhhhcC------------CCCCcccchHHHHHHHhhhhHhhhcCCCCHHHHHHHHHHHHHH
Q 020039 233 FDKALPIMLLYKSEREQYEDSMAAD------------VSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDL 300 (332)
Q Consensus 233 Fn~~L~~~LLY~~ER~QY~~ll~~~------------~~pS~iYG~~HLLRLfvkLP~lL~~t~~d~~s~~~l~~~l~~f 300 (332)
||++||++|||++||.||.+++... .+||++||++|||||||+||+||+.++|++.+++.|+.++++|
T Consensus 98 Fn~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~~~~~~~~~l~~~l~~f 177 (194)
T PF05712_consen 98 FNKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTNMDEESINILLEHLQDF 177 (194)
T ss_dssp HHHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCGGCHHHHHHHHHHHHHH
T ss_pred HHHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998653 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHchhcccc-ccC
Q 020039 301 LKFLQKHQSTFFL-SRY 316 (332)
Q Consensus 301 L~fL~~n~~~~F~-~dY 316 (332)
|+||++|.+.||. ++|
T Consensus 178 l~fL~~n~~~~f~~~~y 194 (194)
T PF05712_consen 178 LKFLEKNSEEYFSEEDY 194 (194)
T ss_dssp HHHHHHTHHHHS-GGGE
T ss_pred HHHHHHHHHHhCCcccC
Confidence 9999999999999 666
No 2
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.3e-45 Score=356.83 Aligned_cols=279 Identities=35% Similarity=0.482 Sum_probs=217.4
Q ss_pred CCCcCCCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccccccChHhhhhchhhhh---------
Q 020039 49 SCPYQVNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRHRQPVFTK--------- 119 (332)
Q Consensus 49 ~~~f~vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~~qk~L~~--------- 119 (332)
.+.|..||+|+|+||++.|+|+|++.........|.|||.||+..|||||++.+.++++++|+..++.+..
T Consensus 5 ~~~~~~~e~~~~~~~~~~~eak~~k~~~~~~~~~~~i~~~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~ 84 (391)
T KOG3001|consen 5 NIEVLSNERVLCFHGPLMEEAKIVKKEIGDKSSKYKIHRSKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDE 84 (391)
T ss_pred cccccccceeeecccchhhhhhhhhhccccCcccccccccccCCccchhhhhhhcCCcchhhHHHHHHhhhhcccccccc
Confidence 34688999999999999999999999999999999999999999999999999999999999998888772
Q ss_pred -----hhh-h-h-----hc---ccc------------CCccCCCC--------------CC---------------CCCC
Q 020039 120 -----KRD-E-D-----KN---LKS------------GHALQMKP--------------RS---------------SNVG 143 (332)
Q Consensus 120 -----~~~-~-~-----k~---~k~------------~~~~~~k~--------------k~---------------s~~~ 143 (332)
.++ . . ++ .++ .+....+. +. .++.
T Consensus 85 ~~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~~~~s~~~~~k~~~~~~~ 164 (391)
T KOG3001|consen 85 DETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEEKIPVGKNVDRIKEGVDGQRKEKSNSGPPSLQGTRKSKQEKPS 164 (391)
T ss_pred ccccccchhhHHHHHHhhccCccccccccccccccccccccccccccccccCccccccccCCCCCceeeecccccccccc
Confidence 000 0 0 00 000 00000000 00 0000
Q ss_pred CCC--------------------------ccCCCC-------ccccccccCCCceeEEeCChhHHHHHHHHhHhhhhCCc
Q 020039 144 RGR--------------------------KRKNDS-------LNKETNGLQMENFVNIQIPPPLKKQLVDDCEFITHLGK 190 (332)
Q Consensus 144 ~~~--------------------------kr~~~~-------~~e~~~~~~~~~~i~I~iP~~Lk~iLvdD~e~Itk~~k 190 (332)
.++ ++.... .++........+++.+.||..|+..|+|||+.+++..+
T Consensus 165 ~~~~~~~s~~~s~~~~~~~~e~~~~~~~~~~~~~~e~s~~~~~v~~~~~~~~~~~v~~~l~~~~~~~l~dd~~~vt~~~~ 244 (391)
T KOG3001|consen 165 TSDKFDTSAAESVPSPAREQESSPQPPRKKRSTISESSESNPLVETPPTLPATVEVKLSLPQELKRSLVDDWDSVTEVDS 244 (391)
T ss_pred cCCCCCCchhccCCCccchhhcccccccccccccccccCCCCcccCCCCCCccccccccCchhhcccccchhhhhhhhhh
Confidence 000 000000 00011112224578899999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHhhhccCC---chhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcC---CCCCccc
Q 020039 191 LVKLPRTPNVDDILEKYCDYRSKKDG---LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAAD---VSPSSVY 264 (332)
Q Consensus 191 L~~LPa~~tV~~IL~~Y~~~~~~~~~---~~~~~~~E~~~Gl~~YFn~~L~~~LLY~~ER~QY~~ll~~~---~~pS~iY 264 (332)
++.+|+..+|+.|+..|......... .....+.+...|++.|||.+||.+|||++||.||.+++.+. ..||++|
T Consensus 245 ~~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yfn~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vy 324 (391)
T KOG3001|consen 245 LAELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYFNGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVY 324 (391)
T ss_pred hhcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeeecccchhhhhhhhhhHHHHHHHhcCCCCCCcccch
Confidence 99999999999999999887764331 12223345558999999999999999999999999998643 3499999
Q ss_pred chHHHHHHHhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHchhcccc-ccCCCCCHHHHHhh
Q 020039 265 GAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRYHSAEDVETSAN 327 (332)
Q Consensus 265 G~~HLLRLfvkLP~lL~~t~~d~~s~~~l~~~l~~fL~fL~~n~~~~F~-~dY~~as~eY~~~a 327 (332)
|++|||||||+||+||.++.|+.++++.|+.++++|++||.+|...||. ++|.+++++|.+.+
T Consensus 325 Ga~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk~L~~~~~~~f~~s~y~~~~~e~~~~~ 388 (391)
T KOG3001|consen 325 GAEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLKYLRKNSASFFSSSDYSNASPEYSSSS 388 (391)
T ss_pred hHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhccccccccchhhhchhhhhcc
Confidence 9999999999999999999999999999999999999999999977777 99999999999876
No 3
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=99.82 E-value=1.3e-20 Score=137.88 Aligned_cols=53 Identities=42% Similarity=0.777 Sum_probs=48.2
Q ss_pred cCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceecccccc
Q 020039 52 YQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (332)
Q Consensus 52 f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (332)
|+||++|+|.+ .+.+|+|+|++++..++..+|||||.|||+||||||+.++|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 68999999999 899999999999999999999999999999999999999873
No 4
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=99.56 E-value=9e-15 Score=146.07 Aligned_cols=54 Identities=28% Similarity=0.574 Sum_probs=49.4
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEee----CCeeEEEEEEcCCCCCccceecccccc
Q 020039 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYR----LKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (332)
Q Consensus 51 ~f~vge~vl~~~~--~~~YeAkIl~~~~~----~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (332)
.|+||++|+|+|+ +.+|+|+|++++.. ++...|||||.|||+||||||+.+||-
T Consensus 53 ~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLd 112 (450)
T PLN00104 53 PLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLD 112 (450)
T ss_pred eeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhcc
Confidence 5999999999998 89999999999973 356789999999999999999999994
No 5
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=97.72 E-value=0.00013 Score=59.33 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=45.7
Q ss_pred CCCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccc--cccc
Q 020039 46 TPASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMK 105 (332)
Q Consensus 46 ~~~~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k 105 (332)
..+...|++|.++-+.+. ..+.-|.|+++. +..-+|||.||..++|.|+..+ +|+.
T Consensus 22 ~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~----g~~l~v~~dg~~~~~D~W~~~~S~~I~P 82 (96)
T smart00561 22 DSPPNGFKVGMKLEAVDPRNPSLICVATVVEVK----GYRLLLHFDGWDDKYDFWCDADSPDIHP 82 (96)
T ss_pred CCccCcccCCCEEEEECCCCCceEEEEEEEEEE----CCEEEEEEccCCCcCCEEEECCCCCccc
Confidence 345557999999999985 368899999987 2489999999999999999874 5554
No 6
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.58 E-value=0.00015 Score=52.31 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceecccccccc
Q 020039 51 PYQVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (332)
Q Consensus 51 ~f~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (332)
.|++|+.|++.+ .+.||.|+|+++... ..|.|+|.++... +||+.+.|...
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~---~~~~V~f~D~G~~--~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE---QLYEVFFIDYGNE--EVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC---CEEEEEEECCCcc--EEEeHHHeecC
Confidence 488999999998 899999999999754 5799999988775 89998877654
No 7
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.27 E-value=0.00029 Score=50.18 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=32.0
Q ss_pred eEEEEEEeeC--CeeEEEEEEcCCCCCccceecccccccc
Q 020039 69 AKVIQVQYRL--KEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (332)
Q Consensus 69 AkIl~~~~~~--~~~~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (332)
.+|++.+... +...|+||+.||+.+.|.|++.++|...
T Consensus 6 e~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 6 EKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred eeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch
Confidence 4666666655 7889999999999999999999988754
No 8
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.18 E-value=0.00031 Score=49.89 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.1
Q ss_pred eEEEEEE-eeCCeeEEEEEEcCCCCCccceeccccccc
Q 020039 69 AKVIQVQ-YRLKEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (332)
Q Consensus 69 AkIl~~~-~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (332)
.+|++.+ ..++...|+|||.||+.+.+.|++.+.|..
T Consensus 5 ~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 5 EKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred heeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHH
Confidence 5788887 667788999999999999999999988764
No 9
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.15 E-value=0.0012 Score=48.46 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=37.6
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccc
Q 020039 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRL 103 (332)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri 103 (332)
.|++|+.|-+++ .+.||+|+|+++.. ...|.|+|.+....--|=|+..+|
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~~~~L 53 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG---DGKYLVRYLTESEPLKETVDWSDL 53 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC---CCEEEEEECCCCcccEEEEeHHHc
Confidence 489999999999 89999999999865 347999999933332344444443
No 10
>PTZ00064 histone acetyltransferase; Provisional
Probab=96.93 E-value=0.00034 Score=71.29 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=24.0
Q ss_pred CeeEEEEEEcCCCCCccceeccccccc
Q 020039 79 KEWTFRVHYLGWNKSWDEWVGVHRLMK 105 (332)
Q Consensus 79 ~~~~Y~VHY~GWn~r~DEWV~~~ri~k 105 (332)
+...|||||.|+|+|.||||..+||.-
T Consensus 147 ~~~eyYVHy~g~nrRlD~WV~~~ri~~ 173 (552)
T PTZ00064 147 EDYEFYVHFRGLNRRLDRWVKGKDIKL 173 (552)
T ss_pred CCeEEEEEecCcCchHhhhcChhhccc
Confidence 345999999999999999999998854
No 11
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=96.70 E-value=0.0013 Score=64.45 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=45.8
Q ss_pred CCCEEEEEeCCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceecccccccc
Q 020039 54 VNEKVLAFFQSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (332)
Q Consensus 54 vge~vl~~~~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (332)
++.+|.+.-.|....|.|+++..+....+|+|||..+|+|.||||..+.|-+.
T Consensus 8 ~~sk~~~~~d~e~~~~~Il~~~~~k~~~~fyvh~~~~nrrl~e~i~~~~i~~~ 60 (395)
T COG5027 8 IKSKVASEKDGEARKAEILEINTRKSRIKFYVHYVELNRRLDEWITADLINLG 60 (395)
T ss_pred EEeeeeeecCCceeEEeeeeeccCccCccEEEeehhhhhhhhhheeccccccc
Confidence 34556666677888999999999988999999999999999999999988774
No 12
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.58 E-value=0.0053 Score=42.57 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=36.6
Q ss_pred CCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceecccccc
Q 020039 55 NEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLM 104 (332)
Q Consensus 55 ge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (332)
|+.|+|.+. +.||.|+|+++.. ...|.|+|.++... +.|+.+.|.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~---~~~~~V~f~DyG~~--~~v~~~~l~ 47 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS---DGKVEVFFVDYGNT--EVVPLSDLR 47 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC---CCcEEEEEEcCCCc--EEEeHHHcC
Confidence 788999986 8999999999975 45799999998875 667766553
No 13
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=96.15 E-value=0.011 Score=56.39 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=40.3
Q ss_pred CCCCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccccccChH
Q 020039 48 ASCPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (332)
Q Consensus 48 ~~~~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (332)
+...+.||++|+|.| .|.+|+|+|.+|....+ .+.|.|.||+.+ |.|.-..|+..+..
T Consensus 65 ~~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~--~~~V~f~gYgn~--e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 65 PNKKWKVGDKCMAVYSEDGQYYPATIESIDEEDG--TCVVVFTGYGNE--EEVNLSDLKPSEGD 124 (264)
T ss_dssp TTT---TT-EEEEE-TTTSSEEEEEEEEEETTTT--EEEEEETTTTEE--EEEEGGGEEETT--
T ss_pred cccCCCCCCEEEEEECCCCCEEEEEEEEEcCCCC--EEEEEEcccCCe--Eeeehhhhcccccc
Confidence 344799999999998 47999999999986543 577999999775 77777777665443
No 14
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=96.14 E-value=0.014 Score=44.22 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=34.6
Q ss_pred cCCCCEEEEEe-----CCeeeeeEEEEEEeeCCeeEEEEEEcCCC------CCccceecccccccc
Q 020039 52 YQVNEKVLAFF-----QSHVYEAKVIQVQYRLKEWTFRVHYLGWN------KSWDEWVGVHRLMKD 106 (332)
Q Consensus 52 f~vge~vl~~~-----~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn------~r~DEWV~~~ri~k~ 106 (332)
|++|+.|-++- .|.||.|+|++....+ .|+|-|.... ...-|||+..+|+.-
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~---~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~ 63 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD---KYLVEYDDLPDEDGESPPLKEWVDARRIRPC 63 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT----EEEEEETT-SS--------EEEEEGGGEEE-
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc---EEEEEECCcccccccccccEEEechheEECc
Confidence 78999998876 4799999999987654 9999996332 237899998887643
No 15
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.10 E-value=0.013 Score=42.90 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEc
Q 020039 49 SCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYL 88 (332)
Q Consensus 49 ~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~ 88 (332)
+..|..|+.|.+.|++ ++|+|+|+..... ...|-|-|.
T Consensus 3 ~~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~--~~~y~V~Y~ 42 (55)
T PF09465_consen 3 SRKFAIGEVVMVRWPGSSLYYEGKVLSYDSK--SDRYTVLYE 42 (55)
T ss_dssp SSSS-SS-EEEEE-TTTS-EEEEEEEEEETT--TTEEEEEET
T ss_pred cccccCCCEEEEECCCCCcEEEEEEEEeccc--CceEEEEEc
Confidence 4579999999999974 7999999987654 347888885
No 16
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=95.97 E-value=0.013 Score=46.15 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=46.8
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEee-------CCeeEEEEEEcCCCCCccceeccccccccChHhh
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQYR-------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~-------~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~ 111 (332)
|.+||.|.+..+| .|++|.|+..... .....|.|+|-| ...+ -||+.++|..+++...
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg-~~~~-~wv~~~~l~pf~~~~~ 66 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG-DKTF-AWVGAERLKPFTEHKE 66 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeC-CCcE-EEeCccceeeccchHH
Confidence 7899999999887 6999999988763 234699999999 3333 8999999998876654
No 17
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=95.50 E-value=0.025 Score=43.89 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=46.4
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe----eCCeeEEEEEEcCCCCCccceeccccccccChHhh
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQY----RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~----~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~ 111 (332)
|++|+.|.+.-+| .|++|+|+.... ......|+|.|-|=+ .+ -||+.++|..++ ++.
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~-~~-~wv~~~~i~~f~-~~~ 62 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN-DY-AWVKPSNIKPFS-EFK 62 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTT-EE-EEEEGGGEEECC-HHH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCC-CE-EEECHHHhhChh-hhH
Confidence 7899999998765 799999999864 234569999999988 44 799999999998 554
No 18
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=94.91 E-value=0.04 Score=43.56 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=47.5
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEEEee-CCeeEEEEEEcCCCCCccceeccccccccChH
Q 020039 51 PYQVNEKVLAFFQS-HVYEAKVIQVQYR-LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (332)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~~~~-~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (332)
.|.+||.|.+--.| .+++|+|++.... .....|.|.|-|.+.+ -||+...|..+++.
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~--a~v~~~~l~pf~~~ 60 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHET--AFLKPEDLFPYTEN 60 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCE--eEECHHHceecccc
Confidence 58999999998766 6899999988753 3356899999998765 89999999988764
No 19
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=94.89 E-value=0.039 Score=45.80 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=47.6
Q ss_pred CcCCCCEEEEEeCC-eeeeeEEEEE----------EeeCCeeEEEEEEcCCCCCccceeccccccccChHh
Q 020039 51 PYQVNEKVLAFFQS-HVYEAKVIQV----------QYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEAN 110 (332)
Q Consensus 51 ~f~vge~vl~~~~~-~~YeAkIl~~----------~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en 110 (332)
.|.+|+.|.+--.| -|++|.|..- ........|+|.|.|-+.+| -||++..|+.++..+
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~-aWv~~~~l~pf~~~~ 71 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPER-AWISEKSLKPFKGSK 71 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCE-EEecHHHccccCCch
Confidence 59999999998776 6899999952 12234569999999999777 599999999987655
No 20
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=94.73 E-value=0.073 Score=38.02 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=32.3
Q ss_pred eEEEEEEeeCCee---EEEEEEcCCCCCccceecccccccc
Q 020039 69 AKVIQVQYRLKEW---TFRVHYLGWNKSWDEWVGVHRLMKD 106 (332)
Q Consensus 69 AkIl~~~~~~~~~---~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (332)
-+|++.+..+++. .|+|++.|+....+-|++++.|...
T Consensus 4 e~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~ 44 (55)
T PF00385_consen 4 ERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNC 44 (55)
T ss_dssp EEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSH
T ss_pred EEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHh
Confidence 3688888776666 9999999999999999999988754
No 21
>PLN03239 histone acetyltransferase; Provisional
Probab=94.47 E-value=0.013 Score=57.71 Aligned_cols=22 Identities=32% Similarity=0.765 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCccceecccccc
Q 020039 83 FRVHYLGWNKSWDEWVGVHRLM 104 (332)
Q Consensus 83 Y~VHY~GWn~r~DEWV~~~ri~ 104 (332)
|||||.+.|+|.|+||+.+.|.
T Consensus 1 yYVh~~~~nkRlD~Wv~~~~l~ 22 (351)
T PLN03239 1 YYVHYKDFNRRMDEWISKDKSN 22 (351)
T ss_pred CeEEeccccchHhhhcChhhcc
Confidence 8999999999999999998873
No 22
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=94.10 E-value=0.093 Score=39.04 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=43.7
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCccceeccccccccC
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~--------~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (332)
|++||.|++--+| -++.|+|+.-... .....|.|+|-|=+.. -||+.++|..+|
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~--awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDT--AWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCE--EEECccceeeCC
Confidence 6899999999877 6999999987642 2356999999996665 899999887653
No 23
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=93.08 E-value=0.016 Score=56.79 Aligned_cols=42 Identities=17% Similarity=0.561 Sum_probs=35.1
Q ss_pred eeeee-EEEEEEeeCCeeEEEEEEcCCCCCccceecccccccc
Q 020039 65 HVYEA-KVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKD 106 (332)
Q Consensus 65 ~~YeA-kIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~ 106 (332)
..|.| .||+-+..+|..+|||-+.||+.+|+-|=|+..|+--
T Consensus 9 ~VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDp 51 (369)
T KOG2748|consen 9 RVFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDP 51 (369)
T ss_pred hHHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCH
Confidence 45556 4667777889999999999999999999999888754
No 24
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=92.46 E-value=0.37 Score=36.79 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=31.7
Q ss_pred CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccc--ccccc
Q 020039 64 SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH--RLMKD 106 (332)
Q Consensus 64 ~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~--ri~k~ 106 (332)
..++.|.|+++... .-.|||.||....|.|+..+ +|+..
T Consensus 12 ~~~~vAtV~~v~g~----~l~v~~dg~~~~~d~w~~~~S~~i~Pv 52 (73)
T PF02820_consen 12 SLICVATVVKVCGG----RLLVRYDGWDDDYDFWCHIDSPRIFPV 52 (73)
T ss_dssp CEEEEEEEEEEETT----EEEEEETTSTGGGEEEEETTSTTEEET
T ss_pred CeEEEEEEEEEeCC----EEEEEEcCCCCCccEEEECCCCCeeec
Confidence 57889999998632 49999999999999999864 66653
No 25
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=90.57 E-value=0.46 Score=40.68 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=30.1
Q ss_pred CCCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEEcCCCC
Q 020039 47 PASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHYLGWNK 92 (332)
Q Consensus 47 ~~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY~GWn~ 92 (332)
.+...|..|.+||+.+.+ ..|.|.|..... .....|.|.|.|=..
T Consensus 67 ~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~~ 113 (130)
T PF07039_consen 67 DPLAEFPKGTKVLALYPDTTCFYPATVVSPPK-KKSGEYKLKFEDDED 113 (130)
T ss_dssp -GGGS--TT-EEEEE-TTSSEEEEEEEEEE-S-STTS-EEEEECTTTS
T ss_pred CchhhCCCCCEEEEECCCCceEEEEEEEeCCC-CCCCcEEEEEeCCCC
Confidence 344479999999999974 799999999844 345589999987554
No 26
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=89.24 E-value=0.69 Score=37.31 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=45.8
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEE----------eeCCeeEEEEEEcCCCCCccceeccccccccChHhhh
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQ----------YRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANRH 112 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~----------~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~~ 112 (332)
|.+||.|++.-+| .|++|+|+.-. ...+...|.|.|-|=+ .+ -||...+|..+++++..
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~-~~-~Wv~~~~l~pl~~~~~~ 70 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDG-DY-YWVPNKDLKPLTEEKIA 70 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCC-cE-EEEChhhcccCCHHHHH
Confidence 6899999998766 69999998732 1234568999998832 11 69999999999987764
No 27
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=88.94 E-value=0.93 Score=38.43 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=43.5
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEe--eCCeeEEEEEEcCCCCCccceeccccccccChHhh
Q 020039 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQY--RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEANR 111 (332)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~--~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~en~ 111 (332)
.+++|+.||+.|. ..+++|+|+..-. ......|.||| ||-+ -.+|+.+.+++.+++-+
T Consensus 55 ~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f--~ng~-~~~vp~~~~~~I~~~~y 117 (124)
T PF15057_consen 55 SLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRF--YNGK-TAKVPRGEVIWISPSYY 117 (124)
T ss_pred cCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEE--ECCC-CCccchhhEEECCHHHH
Confidence 4899999999995 3688899997533 23456999999 6665 57888888888766443
No 28
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=87.44 E-value=0.8 Score=36.33 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=43.2
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeC----CeeEEEEEEcCCCCCccceeccccccccCh
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRL----KEWTFRVHYLGWNKSWDEWVGVHRLMKDTE 108 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~~----~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~ 108 (332)
|.+||.|.+-=.| .|++|+|.+..... ....|.|+|-|.+. =.||..++|..+.+
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~--~a~v~~~~l~pf~e 60 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGT--FSEVSVDKLSPFSE 60 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCC--EeEECHHHCcChhH
Confidence 7899999997655 69999999875432 24589999999654 37999999988753
No 29
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=84.28 E-value=1.8 Score=34.31 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=43.0
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe-----eCCeeEEEEEEcCCCCCccceeccccccccChH
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQY-----RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~-----~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (332)
|++||.|.+--+| -+++|+|++-.. ......|.|.|-|=+.. -||..+.|..+++.
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~--~wv~~~~l~pF~~~ 62 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENH--AWIKEENIKPYHEH 62 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCE--EEECHHhCeechhh
Confidence 7899999998776 689999987432 12246899999995532 89999999888653
No 30
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=81.40 E-value=2.3 Score=34.28 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=42.4
Q ss_pred CCCCEEEEEeCC-eeeeeEEEEEEee--------CCeeEEEEEEcCCCCCccceeccccccccChH
Q 020039 53 QVNEKVLAFFQS-HVYEAKVIQVQYR--------LKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (332)
Q Consensus 53 ~vge~vl~~~~~-~~YeAkIl~~~~~--------~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (332)
.+||.|.+.-++ .|++|.|++-... .....|.|+|-|-+.. -||...+|+.+.+.
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y--~Wv~~~~l~pf~e~ 65 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDY--YWVHRGRVFPYQEG 65 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCE--EEeccccccchhhh
Confidence 579999999876 6899999974321 2235899999996543 69999999988644
No 31
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=78.15 E-value=2.1 Score=39.27 Aligned_cols=42 Identities=21% Similarity=0.525 Sum_probs=33.6
Q ss_pred CCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCC
Q 020039 50 CPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKS 93 (332)
Q Consensus 50 ~~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r 93 (332)
..|+||++|.+.+ ++..|+|.|..|....+.-. |.|.|+..|
T Consensus 66 ~~wKVgdkc~A~Y~e~g~~ypatidsi~~~~~tcv--v~ylgygnr 109 (218)
T KOG4327|consen 66 QQWKVGDKCSAIYSEDGCIYPATIDSIDFKRETCV--VVYLGYGNR 109 (218)
T ss_pred hhheecceeeeeeecCcccccceecccccccCceE--EEEEeecch
Confidence 3799999999866 46789999999986655444 888898776
No 32
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=77.78 E-value=6.9 Score=30.84 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=41.7
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccccccC
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (332)
|.+|+.|.+--.| -+++|+|.++... ...|.|-|.|=+. --.|+..+.++++.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~--~~k~~V~FfG~~~-~~a~~~~~~l~p~~ 54 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRK--KQKARVNFIGDNM-QSEKKGIRVVKRWL 54 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCC--CCEEEEEEeCCCC-ceeccchhhccccc
Confidence 7899999998776 5899999988653 5689999999872 23788887777663
No 33
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=73.41 E-value=5.6 Score=31.57 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=41.1
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccccccChH
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (332)
+..|+.|.+-..| -+++|+|++... ..|.|.|-|=.... -||+..+|..++..
T Consensus 7 ~~p~dLVwAK~kGyp~WPAkV~~~~~----~~~~V~FFG~t~~~-a~v~~~~i~~~~~~ 60 (83)
T cd05841 7 RPPHELVWAKLKGFPYWPAKVMRVED----NQVDVRFFGGQHDR-AWIPSNNIQPISTE 60 (83)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeecCC----CeEEEEEcCCCCCe-EEEehHHeeehhhh
Confidence 5678999998877 689999998643 58999998822211 69999999988654
No 34
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=67.43 E-value=11 Score=31.85 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccccccC
Q 020039 55 NEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (332)
Q Consensus 55 ge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (332)
|.+|+|++. |..|.|.|.+.- +...|+|+| +...=+.|+...|..+.
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~---~~~~~lV~f---~~~~~~~v~~~~iI~~~ 49 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV---SSGQFLVEF---DDGDTQEVPISDIIALS 49 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc---CCCEEEEEE---CCCCEEEeChHHeEEcc
Confidence 789999985 799999999876 456999999 22222677777776654
No 35
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=67.19 E-value=8.1 Score=32.33 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=44.1
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEEe-----------------------eCCeeEEEEEEcCCCCCccceeccccccccC
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQY-----------------------RLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~~-----------------------~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (332)
++.|+.|.+-..| -+|.|.|+.-.. ..+...|+|+|.|=...| -||+..+|..++
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~-~Wv~~~~l~pl~ 79 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTW-QWLPGDKLEPLG 79 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcc-eecCHHHCcccc
Confidence 3578999887765 689999987431 235668999998876666 599999988877
Q ss_pred hHhh
Q 020039 108 EANR 111 (332)
Q Consensus 108 ~en~ 111 (332)
.++-
T Consensus 80 ~~~~ 83 (111)
T cd05839 80 VDET 83 (111)
T ss_pred cchh
Confidence 6554
No 36
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=67.07 E-value=9.4 Score=36.40 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCCcCCCCEEEEEeCC--eeeeeEEEEEEeeCCeeEEEEEE
Q 020039 48 ASCPYQVNEKVLAFFQS--HVYEAKVIQVQYRLKEWTFRVHY 87 (332)
Q Consensus 48 ~~~~f~vge~vl~~~~~--~~YeAkIl~~~~~~~~~~Y~VHY 87 (332)
|-..|..|..||+.+.+ .+|.|.|+..-..... .|+|-|
T Consensus 195 p~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~-~y~vlf 235 (264)
T KOG3038|consen 195 PTALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSC-DYYVLF 235 (264)
T ss_pred CccCCCCCCEEEEEcCCcceeeeeEeecCCCCCCC-cceeee
Confidence 44479999999999975 7999999987655433 444443
No 37
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=66.27 E-value=58 Score=29.14 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=68.5
Q ss_pred eCChhHHHHHHH-HhHhhhhCCceecCCCCCC-HHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhh
Q 020039 169 QIPPPLKKQLVD-DCEFITHLGKLVKLPRTPN-VDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSE 246 (332)
Q Consensus 169 ~iP~~Lk~iLvd-D~e~Itk~~kL~~LPa~~t-V~~IL~~Y~~~~~~~~~~~~~~~~E~~~Gl~~YFn~~L~~~LLY~~E 246 (332)
.+|..+..++.. +..-...+| |+++|...+ ++++.+.| +.-... .-....+..++..|+.||...=...+=+.
T Consensus 14 ~vP~~i~~~i~~l~~~g~~~eG-iFR~~g~~~~i~~l~~~~-~~~~~~-~~~~~~~~~va~~lK~flreLpepLi~~~-- 88 (192)
T cd04402 14 NLPKPILDMLSLLYQKGPSTEG-IFRRSANAKACKELKEKL-NSGVEV-DLKAEPVLLLASVLKDFLRNIPGSLLSSD-- 88 (192)
T ss_pred CCCHHHHHHHHHHHHhCCCCCC-eeeCCCcHHHHHHHHHHH-hCCCCC-CCccCCHHHHHHHHHHHHHhCCCccCCHH--
Confidence 477776665433 111223333 788887766 33333333 222111 11122345566667777776543322221
Q ss_pred HhhHHHhhh------------------cCCCCCcccchHHHHHHHhhhhHhhhcCCCCHHHHHH----------------
Q 020039 247 REQYEDSMA------------------ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTL---------------- 292 (332)
Q Consensus 247 R~QY~~ll~------------------~~~~pS~iYG~~HLLRLfvkLP~lL~~t~~d~~s~~~---------------- 292 (332)
.|..++. ...+.+...=+.||+++|.++-.-=....|+...+..
T Consensus 89 --~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~~~~ 166 (192)
T cd04402 89 --LYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQ 166 (192)
T ss_pred --HHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCccHHH
Confidence 1222211 1123344444456666665544322233444433321
Q ss_pred --HHHHHHHHHHHHHHchhcccccc
Q 020039 293 --LQHKLVDLLKFLQKHQSTFFLSR 315 (332)
Q Consensus 293 --l~~~l~~fL~fL~~n~~~~F~~d 315 (332)
-...+..++.||-.|.+..|..|
T Consensus 167 ~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 167 NEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred HHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 12457889999999999888754
No 38
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=66.03 E-value=8.6 Score=28.56 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=24.2
Q ss_pred CCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEc
Q 020039 53 QVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYL 88 (332)
Q Consensus 53 ~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~ 88 (332)
.+|+++++.-. ..-..+.|++++-.+|.+-|.|+|.
T Consensus 4 ~vGD~lvv~g~~vg~~~r~GeIveV~g~dG~PPY~VRw~ 42 (58)
T PF08940_consen 4 SVGDRLVVHGRTVGQPDRHGEIVEVRGPDGSPPYLVRWD 42 (58)
T ss_dssp -TTEEEEES-TTTS--EEEEEEEE-S-SSS-S-EEEEET
T ss_pred CCCCEEEEcCCcCCCCCcEeEEEEEECCCCCCCEEEEec
Confidence 57898877542 3578999999999999999999975
No 39
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=63.62 E-value=1e+02 Score=27.51 Aligned_cols=137 Identities=17% Similarity=0.250 Sum_probs=66.3
Q ss_pred eCChhHHHHHHHHh-HhhhhCCceecCCCCCC-HHHHHHHHHHhhhccCCchh-hhHHHHHHHHHHHHhhhcCcccCChh
Q 020039 169 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPN-VDDILEKYCDYRSKKDGLVA-DSTGEIVKGLRCYFDKALPIMLLYKS 245 (332)
Q Consensus 169 ~iP~~Lk~iLvdD~-e~Itk~~kL~~LPa~~t-V~~IL~~Y~~~~~~~~~~~~-~~~~E~~~Gl~~YFn~~L~~~LLY~~ 245 (332)
.+|..|..++..=. .-+..+| ++++|...+ |+++.+.|-+.... .-.. ..+..++.-|+.||...= .-|+-.
T Consensus 22 ~iP~il~~~i~~l~~~g~~~eG-IFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va~~LK~~lr~Lp-~pLi~~- 96 (195)
T cd04404 22 PIPPVVRETVEYLQAHALTTEG-IFRRSANTQVVKEVQQKYNMGEPV--DFDQYEDVHLPAVILKTFLRELP-EPLLTF- 96 (195)
T ss_pred CCChHHHHHHHHHHHcCCCCCC-eeeCCCcHHHHHHHHHHHhCCCCC--CcccccCHHHHHHHHHHHHHhCC-CccCCH-
Confidence 57777665432211 1233333 788887654 44444444321111 1111 123445566777877643 333321
Q ss_pred hHhhHHHhhh-----------------cCCCCCcccchHHHHHHHhhhhHhhhcCCCCHHHHHH----------------
Q 020039 246 EREQYEDSMA-----------------ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTL---------------- 292 (332)
Q Consensus 246 ER~QY~~ll~-----------------~~~~pS~iYG~~HLLRLfvkLP~lL~~t~~d~~s~~~---------------- 292 (332)
| .|..++. ...++....=+.+|+++|.++-.--....|+...+..
T Consensus 97 ~--~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~l 174 (195)
T cd04404 97 D--LYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASMSL 174 (195)
T ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCcccCH
Confidence 1 1222211 1224444444566666666554332333455444332
Q ss_pred -HHHHHHHHHHHHHHchhccc
Q 020039 293 -LQHKLVDLLKFLQKHQSTFF 312 (332)
Q Consensus 293 -l~~~l~~fL~fL~~n~~~~F 312 (332)
=...++.|++||-.|.++.|
T Consensus 175 ~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 175 SAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred HHHHHHHHHHHHHHHhHHhhC
Confidence 12346789999999988776
No 40
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=57.14 E-value=17 Score=37.76 Aligned_cols=49 Identities=33% Similarity=0.479 Sum_probs=42.0
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCC-ccceecccc
Q 020039 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKS-WDEWVGVHR 102 (332)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r-~DEWV~~~r 102 (332)
.|+||.+|.+... ..+-.|.|.+|-.. ....||+.||... +|.|+..+.
T Consensus 200 ~F~vgmkLEavd~~np~~IcvATV~~V~~~---~~i~v~~d~~~~~~~d~~~~~~s 252 (478)
T KOG3766|consen 200 RFQVGMKLEAVDDLNPSAICVATVVEVFDS---REILVHFDGWDKSELDYWCDHDS 252 (478)
T ss_pred cceeccEEEEeccCCCcceeeeehheeccc---ceEEEEeccCCCcccceeEecCC
Confidence 6999999999874 47888999988754 3589999999999 999998876
No 41
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=52.13 E-value=1.8e+02 Score=26.09 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHchhccc
Q 020039 294 QHKLVDLLKFLQKHQSTFF 312 (332)
Q Consensus 294 ~~~l~~fL~fL~~n~~~~F 312 (332)
...++.++++|-+|.+.+|
T Consensus 181 ~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 181 TPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred cHHHHHHHHHHHHhhhhcC
Confidence 3456778888888887776
No 42
>PHA02763 hypothetical protein; Provisional
Probab=49.98 E-value=2.2 Score=34.24 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=40.2
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeC-CeeEEEEEEcCCCCCccceecccccc
Q 020039 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRL-KEWTFRVHYLGWNKSWDEWVGVHRLM 104 (332)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~-~~~~Y~VHY~GWn~r~DEWV~~~ri~ 104 (332)
-|++|++|...-+.....|||+.+..-. ....=||.|.|+++ -.||+.+.|=+
T Consensus 27 ~YK~gqkv~l~v~dr~f~gKvIa~ap~t~~~LsKYv~~SGFe~-VEeWl~eArrL 80 (102)
T PHA02763 27 FYKIGQKVILKVGDKRFPGKVIAKAPVTEYCLSKYVKFSGFEN-VEEWLNEARRL 80 (102)
T ss_pred hhccCcEEEEEecCccccceEEEecCchHHHHHHHhhhcchhh-HHHHHHHHHHH
Confidence 4899999988888888999999887532 22234679999986 67899886443
No 43
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=48.77 E-value=46 Score=26.01 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.6
Q ss_pred CcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccccccC
Q 020039 51 PYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDT 107 (332)
Q Consensus 51 ~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t 107 (332)
...+|+.++|.. .+.||-|+| ....+...|.|.|..+... ++|+.+.|....
T Consensus 51 ~~~~~~~~~~~~~~~~~w~Ra~I---~~~~~~~~~~V~~iD~G~~--~~v~~~~l~~l~ 104 (121)
T PF00567_consen 51 ESNPGEGCLCVVSEDGRWYRAVI---TVDIDENQYKVFLIDYGNT--EKVSASDLRPLP 104 (121)
T ss_dssp T--TTEEEEEEETTTSEEEEEEE---EEEECTTEEEEEETTTTEE--EEEEGGGEEE--
T ss_pred ccccCCEEEEEEecCCceeeEEE---EEecccceeEEEEEecCce--EEEcHHHhhhhC
Confidence 466888888876 589999999 2223455899999988774 668888887764
No 44
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=44.68 E-value=4 Score=41.26 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCCCCcCCCCEEEEEeCCeeeeeEEEEEEeeC------------------CeeEEEEEEcCCCCCcc------------c
Q 020039 47 PASCPYQVNEKVLAFFQSHVYEAKVIQVQYRL------------------KEWTFRVHYLGWNKSWD------------E 96 (332)
Q Consensus 47 ~~~~~f~vge~vl~~~~~~~YeAkIl~~~~~~------------------~~~~Y~VHY~GWn~r~D------------E 96 (332)
.++..|.+||-|.|...+.+|+|.+...+... +...|.+|+.|||.|.| +
T Consensus 43 ~~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~ 122 (391)
T KOG3001|consen 43 RSKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDEDETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEE 122 (391)
T ss_pred ccccCCccchhhhhhhcCCcchhhHHHHHHhhhhccccccccccccccchhhHHHHHHhhccCccccccccccccccccc
Confidence 44556899999999999999999887766543 23366788888888888 5
Q ss_pred eecc----ccccccChHhhh
Q 020039 97 WVGV----HRLMKDTEANRH 112 (332)
Q Consensus 97 WV~~----~ri~k~t~en~~ 112 (332)
-++. +|+++.+..++.
T Consensus 123 ~~~~~~~~d~~~~~~~g~~~ 142 (391)
T KOG3001|consen 123 KIPVGKNVDRIKEGVDGQRK 142 (391)
T ss_pred cccccccccccccCcccccc
Confidence 5553 577777776664
No 45
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=42.11 E-value=43 Score=28.29 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=26.1
Q ss_pred CCcCCCCEEEEEeC--CeeeeeEEEEEEeeCCeeEE
Q 020039 50 CPYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKEWTF 83 (332)
Q Consensus 50 ~~f~vge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y 83 (332)
..|.+||-|++..+ ...|-|+|+++....++..|
T Consensus 2 ~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~ 37 (122)
T cd04716 2 ITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTY 37 (122)
T ss_pred cEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceE
Confidence 35889999998864 35899999999986555443
No 46
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=37.89 E-value=72 Score=23.72 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCC
Q 020039 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGW 90 (332)
Q Consensus 53 ~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GW 90 (332)
+++++|.+.- |+...++.|+.++.-+.+.-|+|--..+
T Consensus 2 kvnD~VtVKTDG~~rR~G~ilavE~F~EG~MYLvaL~dY 40 (62)
T PF10781_consen 2 KVNDRVTVKTDGGPRREGVILAVEPFNEGTMYLVALEDY 40 (62)
T ss_pred ccccEEEEecCCcccccceEEEEeeccCcEEEEEEcCcC
Confidence 5789998875 6688999999999988889999976543
No 47
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=36.72 E-value=8.3 Score=38.98 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=23.2
Q ss_pred eEEEEEEeeCC-eeEEEEEEcCCCCCccceec
Q 020039 69 AKVIQVQYRLK-EWTFRVHYLGWNKSWDEWVG 99 (332)
Q Consensus 69 AkIl~~~~~~~-~~~Y~VHY~GWn~r~DEWV~ 99 (332)
|.+.-...... ...|+|||++-|+|.|+||+
T Consensus 38 ~~~~~~~~~~s~~~~~~v~~~~~~~r~d~~~~ 69 (396)
T KOG2747|consen 38 AETLPRKLIQSASLEYYVHYQKLNRRLDEWIG 69 (396)
T ss_pred ccccccccccCCCccchhhHHhhhcccccccc
Confidence 44443333333 66999999999999999998
No 48
>PRK10708 hypothetical protein; Provisional
Probab=35.34 E-value=86 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCCEEEEEe-CCeeeeeEEEEEEeeCCeeEEEEEEcCC
Q 020039 53 QVNEKVLAFF-QSHVYEAKVIQVQYRLKEWTFRVHYLGW 90 (332)
Q Consensus 53 ~vge~vl~~~-~~~~YeAkIl~~~~~~~~~~Y~VHY~GW 90 (332)
+++++|.+.- |+...++.|+.++.-+.+.-|+|--..+
T Consensus 2 kvnD~VtVKTDG~~rR~G~iLavE~F~EG~MyLvaL~dY 40 (62)
T PRK10708 2 KVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDY 40 (62)
T ss_pred ccccEEEEecCCCccccceEEEEeeccCcEEEEEEcCcC
Confidence 5789998875 6688999999999988889999976543
No 49
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=34.18 E-value=70 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.069 Sum_probs=23.3
Q ss_pred CcCCCCEEEEEeC---CeeeeeEEEEEEeeCC
Q 020039 51 PYQVNEKVLAFFQ---SHVYEAKVIQVQYRLK 79 (332)
Q Consensus 51 ~f~vge~vl~~~~---~~~YeAkIl~~~~~~~ 79 (332)
.|++||-|++.-. ...|-|+|.++....+
T Consensus 3 ~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~ 34 (121)
T cd04714 3 IIRVGDCVLFKSPGRPSLPYVARIESLWEDPE 34 (121)
T ss_pred EEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCC
Confidence 5899999998854 3589999999987543
No 50
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=31.18 E-value=96 Score=18.25 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.4
Q ss_pred cCCCCEEEEEeCC-eeeeeEEEEEE
Q 020039 52 YQVNEKVLAFFQS-HVYEAKVIQVQ 75 (332)
Q Consensus 52 f~vge~vl~~~~~-~~YeAkIl~~~ 75 (332)
|++|+.|.+..|+ .-..|.|+++.
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEc
Confidence 7899999999986 35678888775
No 51
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=31.14 E-value=68 Score=24.01 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHHhhhhHhhhcCCCCHHHHHHHHHHHHHH
Q 020039 268 HLLRLFVKLPELLVHAKIEEETLTLLQHKLVDL 300 (332)
Q Consensus 268 HLLRLfvkLP~lL~~t~~d~~s~~~l~~~l~~f 300 (332)
||.||--++-..+...+-.++.+.-+..||+.|
T Consensus 1 ~LI~MANQIa~ff~~~p~~~~a~~~va~Hi~kF 33 (61)
T PF11390_consen 1 KLIKMANQIAAFFESYPPEEEAVEGVANHIKKF 33 (61)
T ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 789999999999998877778888888888766
No 52
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=31.06 E-value=77 Score=23.69 Aligned_cols=44 Identities=27% Similarity=0.515 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCc
Q 020039 195 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPI 239 (332)
Q Consensus 195 Pa~~tV~~IL~~Y~~~~~~~~~~~~~~~~E~~~Gl~~YFn~~L~~ 239 (332)
|...|.++| .+|+.+.....+-....++-...+|+.+|+.++..
T Consensus 38 ~~~it~~~i-~~y~~~l~~~~~~s~~T~~~~~~~l~~ff~~~~~~ 81 (85)
T PF13495_consen 38 PDEITPEDI-EQYLNYLQNERGLSPSTINQYLSALRSFFRWLLER 81 (85)
T ss_dssp GGG--HHHH-HHHHHHHHTTT---HHHHHHHHHHHHHHHHCTSS-
T ss_pred cchhHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 556676666 88888887433334456677889999999988764
No 53
>smart00439 BAH Bromo adjacent homology domain.
Probab=30.02 E-value=1.3e+02 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=23.8
Q ss_pred cCCCCEEEEEeCC---eeeeeEEEEEEeeCCe
Q 020039 52 YQVNEKVLAFFQS---HVYEAKVIQVQYRLKE 80 (332)
Q Consensus 52 f~vge~vl~~~~~---~~YeAkIl~~~~~~~~ 80 (332)
|.+|+.|++.... ..|-|+|.++....++
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~ 33 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKN 33 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCC
Confidence 7899999998753 5899999999886543
No 54
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=29.41 E-value=40 Score=35.12 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=40.7
Q ss_pred CCCCCCcCCCCEEEEEeC---CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccc
Q 020039 46 TPASCPYQVNEKVLAFFQ---SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVH 101 (332)
Q Consensus 46 ~~~~~~f~vge~vl~~~~---~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ 101 (332)
..|+..|.+|.++.+... ..+--|.|.++..... -||+.||...+|.||..+
T Consensus 302 ~~p~~~~k~~~k~e~~d~~~p~~~~vatv~~~~~~~~----~~h~d~~~~~~~~~i~~d 356 (478)
T KOG3766|consen 302 RCPNHLFKVGMKLEAVDLRNPRLICVATVEKVCKTPL----IIHFDGWPSEYDFWIDID 356 (478)
T ss_pred CCCCccccccceeeeccccCCcccccccchhcccccc----ccCCCCCCcccceeeecC
Confidence 445558999999988873 3567778877766543 899999999999999864
No 55
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=28.93 E-value=40 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=14.6
Q ss_pred CCCCcCCCCEEEEEeCCeeeeeE
Q 020039 48 ASCPYQVNEKVLAFFQSHVYEAK 70 (332)
Q Consensus 48 ~~~~f~vge~vl~~~~~~~YeAk 70 (332)
++..|..|++|. |.|.+|+|+
T Consensus 6 ~~~~Y~~Gd~V~--~~g~~y~a~ 26 (41)
T PF02839_consen 6 PGTTYNAGDRVS--YNGKLYQAK 26 (41)
T ss_dssp TTCEE-TT-EEE--ETTEEEEES
T ss_pred CCCEEcCCCEEE--ECCCEEEEe
Confidence 455689999776 888999885
No 56
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=27.93 E-value=96 Score=24.59 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.5
Q ss_pred CCcCCCCEEEEEeCC-----eeeeeEEEEEEeeCC
Q 020039 50 CPYQVNEKVLAFFQS-----HVYEAKVIQVQYRLK 79 (332)
Q Consensus 50 ~~f~vge~vl~~~~~-----~~YeAkIl~~~~~~~ 79 (332)
..|.+|+.|++.-.+ ..|-|+|.++....+
T Consensus 2 ~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~ 36 (123)
T cd04370 2 ITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN 36 (123)
T ss_pred CEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCC
Confidence 468999999997543 489999999987643
No 57
>PRK14752 delta-hemolysin; Provisional
Probab=26.67 E-value=76 Score=21.71 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=25.8
Q ss_pred HHHHHhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHHHHchhcc
Q 020039 269 LLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTF 311 (332)
Q Consensus 269 LLRLfvkLP~lL~~t~~d~~s~~~l~~~l~~fL~fL~~n~~~~ 311 (332)
+||.|.-+.+=.-. +..-+...+.+|++|+-+...+|
T Consensus 5 ilrifilikegvis------ma~dii~tig~~vk~ii~tv~kf 41 (44)
T PRK14752 5 ILRIFILIKEGVIS------MAQDIISTIGDLVKWIIDTVNKF 41 (44)
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888766553222 23467888999999998877655
No 58
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed
Probab=26.34 E-value=4.7e+02 Score=23.37 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc
Q 020039 284 KIEEETLTLLQHKLVDLLKFLQKH 307 (332)
Q Consensus 284 ~~d~~s~~~l~~~l~~fL~fL~~n 307 (332)
.+...+++..+..|..|++|+.++
T Consensus 69 ~~~~~t~~~~~~~l~~~~~~a~~~ 92 (297)
T PRK00236 69 GLSARSLARRLSALRSFYRWLVRR 92 (297)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhc
Confidence 345567777888899999998765
No 59
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=25.95 E-value=1.8e+02 Score=23.25 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=24.0
Q ss_pred EEEEeC--CeeeeeEEEEEEeeC----CeeEEEEEEcCCCC
Q 020039 58 VLAFFQ--SHVYEAKVIQVQYRL----KEWTFRVHYLGWNK 92 (332)
Q Consensus 58 vl~~~~--~~~YeAkIl~~~~~~----~~~~Y~VHY~GWn~ 92 (332)
|=|... |-|+||+|+.+-... ....|.|-|.++..
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype 42 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPE 42 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GG
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCC
Confidence 445553 689999999998643 46799999988753
No 60
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=25.92 E-value=98 Score=24.44 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=27.1
Q ss_pred CcCCCCEEEEEeCCeeeeeEEEEEEeeCC-eeEEEEEEcCCCCCccceeccccc
Q 020039 51 PYQVNEKVLAFFQSHVYEAKVIQVQYRLK-EWTFRVHYLGWNKSWDEWVGVHRL 103 (332)
Q Consensus 51 ~f~vge~vl~~~~~~~YeAkIl~~~~~~~-~~~Y~VHY~GWn~r~DEWV~~~ri 103 (332)
+|++||.|+.-..|.---..|..+...+. ...|.++|.+=+ =--||.+++
T Consensus 1 mf~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~---~i~vPv~~~ 51 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDD---TIYVPVDNA 51 (98)
T ss_dssp T--TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCE---EEEEECCCG
T ss_pred CCCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCC---EEEEEcCCh
Confidence 48999998887666433333333333222 346667787644 245666553
No 61
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=25.71 E-value=74 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.0
Q ss_pred CcCCCCEEEEEeC--CeeeeeEEEEEEeeCCe
Q 020039 51 PYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKE 80 (332)
Q Consensus 51 ~f~vge~vl~~~~--~~~YeAkIl~~~~~~~~ 80 (332)
.|.||++|.+-|. |.||+|.|-.|....++
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~ 121 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGT 121 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCc
Confidence 5999999999885 89999999988774433
No 62
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=25.43 E-value=55 Score=26.84 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=15.8
Q ss_pred eecCCCCCCHHHHHHHHHHhh
Q 020039 191 LVKLPRTPNVDDILEKYCDYR 211 (332)
Q Consensus 191 L~~LPa~~tV~~IL~~Y~~~~ 211 (332)
|..=|..|||++||+|-....
T Consensus 7 LPtRP~PPTvEqILEDv~~A~ 27 (97)
T PF15136_consen 7 LPTRPEPPTVEQILEDVRGAP 27 (97)
T ss_pred CCCCCCCCCHHHHHHHHhcCC
Confidence 444577799999999976543
No 63
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=24.81 E-value=1.2e+02 Score=24.94 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=23.8
Q ss_pred CCcCCCCEEEEEeC---CeeeeeEEEEEEeeC
Q 020039 50 CPYQVNEKVLAFFQ---SHVYEAKVIQVQYRL 78 (332)
Q Consensus 50 ~~f~vge~vl~~~~---~~~YeAkIl~~~~~~ 78 (332)
..|.+||-|++... ...|-|+|.++....
T Consensus 2 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 33 (121)
T cd04717 2 LQYRVGDCVYVANPEDPSKPIIFRIERLWKDE 33 (121)
T ss_pred CEEECCCEEEEeCCCCCCCCEEEEEeEEEECC
Confidence 35899999998853 468999999998865
No 64
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=24.63 E-value=2.1e+02 Score=24.81 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCcCCCCEEEEEeCCe-eeeeEEEEEEeeCCeeEEEEEEcC
Q 020039 50 CPYQVNEKVLAFFQSH-VYEAKVIQVQYRLKEWTFRVHYLG 89 (332)
Q Consensus 50 ~~f~vge~vl~~~~~~-~YeAkIl~~~~~~~~~~Y~VHY~G 89 (332)
..|.+|++|.+..|++ -++|.|.++...++...=.|...|
T Consensus 118 ~~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g 158 (172)
T TIGR00922 118 IDFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFG 158 (172)
T ss_pred cCCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECC
Confidence 3589999999999985 689999998765555555555554
No 65
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=24.57 E-value=1.7e+02 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=27.1
Q ss_pred CCcCCCCEEEE-EeCCeeeeeEEEEEEeeCCeeEEEE
Q 020039 50 CPYQVNEKVLA-FFQSHVYEAKVIQVQYRLKEWTFRV 85 (332)
Q Consensus 50 ~~f~vge~vl~-~~~~~~YeAkIl~~~~~~~~~~Y~V 85 (332)
..|..||+|.. |++...----|+.|..-++.+-|.|
T Consensus 86 p~F~LGd~V~~~f~~~~pkqRlIlGv~lv~~~W~Y~V 122 (150)
T PF07154_consen 86 PAFRLGDRVEFRFYSDGPKQRLILGVFLVNNSWFYAV 122 (150)
T ss_pred CceecCCEEEEEecCCCCceEEEEEEEEecCceEEEE
Confidence 36999999965 4444444446788888899999999
No 66
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.89 E-value=5.7e+02 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=13.4
Q ss_pred HHHHHHHHHHchhcccc
Q 020039 297 LVDLLKFLQKHQSTFFL 313 (332)
Q Consensus 297 l~~fL~fL~~n~~~~F~ 313 (332)
....+.||-+|.+.+|.
T Consensus 199 ~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 199 AHQCLAYMIEECNTLFM 215 (220)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55668888888888886
No 67
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.32 E-value=5.2e+02 Score=22.81 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=60.5
Q ss_pred EEeCChhHHHHHHHHh-HhhhhCCceecCCCCC-CHHHHHHHHHHhhhcc-CCchhhhHHHHHHHHHHHHhhhcCcccCC
Q 020039 167 NIQIPPPLKKQLVDDC-EFITHLGKLVKLPRTP-NVDDILEKYCDYRSKK-DGLVADSTGEIVKGLRCYFDKALPIMLLY 243 (332)
Q Consensus 167 ~I~iP~~Lk~iLvdD~-e~Itk~~kL~~LPa~~-tV~~IL~~Y~~~~~~~-~~~~~~~~~E~~~Gl~~YFn~~L~~~LLY 243 (332)
...+|..+...+..=. .-+...| |+++|... -|.++.+.|....... .......+..++.-|+.||-.. +.-|+-
T Consensus 12 ~~~iP~~v~~~i~~l~~~g~~~eG-IFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreL-P~pLi~ 89 (184)
T cd04385 12 DNDIPVIVDKCIDFITQHGLMSEG-IYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDL-PDPLLT 89 (184)
T ss_pred CCCCChHHHHHHHHHHHhCCCCCc-eeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhC-CCccCC
Confidence 3578888877642111 1233334 88998764 3455555653311110 0111223456666677777765 444443
Q ss_pred hhhHhhHHHhhhcCCCCCcccchHHHHHHHhhhhHhhhcCCCCHHHHHHHHHHHHHHHHHH
Q 020039 244 KSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFL 304 (332)
Q Consensus 244 ~~ER~QY~~ll~~~~~pS~iYG~~HLLRLfvkLP~lL~~t~~d~~s~~~l~~~l~~fL~fL 304 (332)
. ..|.+++..-..+..--.+..|-.+|.+||.. +-..+..|+.+++.+..+-
T Consensus 90 ~---~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~------n~~~L~~l~~~l~~V~~~~ 141 (184)
T cd04385 90 S---ELHAEWIEAAELENKDERIARYKELIRRLPPI------NRATLKVLIGHLYRVQKHS 141 (184)
T ss_pred H---HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHcc
Confidence 2 22444432111123334455566666666653 2223445555555554443
No 68
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=23.20 E-value=1.2e+02 Score=25.74 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=29.5
Q ss_pred CcCCCCEEEEEeCC------eeeeeEEEEEEeeCCeeEEEEEEcCCC---CCccceec
Q 020039 51 PYQVNEKVLAFFQS------HVYEAKVIQVQYRLKEWTFRVHYLGWN---KSWDEWVG 99 (332)
Q Consensus 51 ~f~vge~vl~~~~~------~~YeAkIl~~~~~~~~~~Y~VHY~GWn---~r~DEWV~ 99 (332)
.|++||.||.++.. .+|.|=-. +.++||+|=..-. -+--+|+=
T Consensus 42 ~f~~GDlvLflpt~~~~~~~~~~~af~~------~~~~YFL~~~s~~~~~~~~~~w~v 93 (129)
T PF10377_consen 42 NFQVGDLVLFLPTRNHNNKKQPWAAFNV------GCPHYFLHEDSIAANELKRREWIV 93 (129)
T ss_pred cCCCCCEEEEEecCCCCccccceEEeeC------CCceEEEecccchhccCCCCCEEE
Confidence 59999999999852 23655433 6789999987763 22246764
No 69
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=23.04 E-value=1.6e+02 Score=33.04 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=41.6
Q ss_pred CCcCCCCEEEEEe--CCeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceeccccccccChH
Q 020039 50 CPYQVNEKVLAFF--QSHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVGVHRLMKDTEA 109 (332)
Q Consensus 50 ~~f~vge~vl~~~--~~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~~~ri~k~t~e 109 (332)
.....|+-|++.+ .+.||-|.|+.|... ...-|||..+.. .|-+|..+|-...+.
T Consensus 694 ~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~---~~~~V~yiDygn--~E~lp~~~l~~lp~~ 750 (875)
T KOG2039|consen 694 YTPKRGDLCVAKYSLDGQWYRALIVEVLDP---ESMEVFYIDYGN--IETLPFVRLKPLPPH 750 (875)
T ss_pred CCCCCCCeeeeeeccccceeeeeeeeeccC---cceeEEEEecCc--ccccccccccCCChH
Confidence 3456999999999 789999999997653 356778877665 478887777666543
No 70
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=22.99 E-value=1.8e+02 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.1
Q ss_pred CcCCCCEEEEEeC-CeeeeeEEEEEEeeC
Q 020039 51 PYQVNEKVLAFFQ-SHVYEAKVIQVQYRL 78 (332)
Q Consensus 51 ~f~vge~vl~~~~-~~~YeAkIl~~~~~~ 78 (332)
.|.+||-|++..+ ...|-|+|.++....
T Consensus 29 ~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~ 57 (159)
T cd04715 29 EYRLYDDVYVHNGDSEPYIGKIIKIYETA 57 (159)
T ss_pred EEeCCCEEEEeCCCCCCEEEEEEEEEEcC
Confidence 5999999999875 468999999998864
No 71
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=22.16 E-value=1.9e+02 Score=29.67 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=50.3
Q ss_pred eCChhHHHHHHHHhHhhhhCCceecCCCCCCHHHHHHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhhHh
Q 020039 169 QIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSERE 248 (332)
Q Consensus 169 ~iP~~Lk~iLvdD~e~Itk~~kL~~LPa~~tV~~IL~~Y~~~~~~~~~~~~~~~~E~~~Gl~~YFn~~L~~~LLY~~ER~ 248 (332)
.+++.|+..|..-+-.+.+.+....+--..=-..|-+.+- .-.......+.|+++|++..|++.+...==|..|+.
T Consensus 70 ~~~edLr~fLe~nlpK~kkkk~sLgi~d~kLg~~i~E~~~----~i~c~~~~~~~ellRGvR~hf~kl~K~L~~~d~~ka 145 (498)
T KOG2573|consen 70 VVHEDLRSFLELNLPKVKKKKVSLGIGDSKLGISIKEAFP----KIPCQSNEVVQELLRGVRKHFDKLMKGLDPGDLEKA 145 (498)
T ss_pred cccHHHHHHHHhhChhhhcCceeeccCcchhhhHHHhhcc----CcccccchhHHHHHHHHHHHHHHHHccCCCccHHHH
Confidence 6788999999888766643333332222111223333331 111234457889999999999999998888999999
Q ss_pred h
Q 020039 249 Q 249 (332)
Q Consensus 249 Q 249 (332)
|
T Consensus 146 q 146 (498)
T KOG2573|consen 146 Q 146 (498)
T ss_pred H
Confidence 9
No 72
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=21.95 E-value=2.7e+02 Score=24.25 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=28.7
Q ss_pred CCcCCCCEEEEEeCCe-eeeeEEEEEEeeCCeeEEEEEEcC
Q 020039 50 CPYQVNEKVLAFFQSH-VYEAKVIQVQYRLKEWTFRVHYLG 89 (332)
Q Consensus 50 ~~f~vge~vl~~~~~~-~YeAkIl~~~~~~~~~~Y~VHY~G 89 (332)
..|.+|++|.+..|++ -++|.|.++...++...=.|...|
T Consensus 125 ~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G 165 (181)
T PRK05609 125 VDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFG 165 (181)
T ss_pred cCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECC
Confidence 3599999999999985 699999998754443333333333
No 73
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.80 E-value=5.8e+02 Score=22.80 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=34.8
Q ss_pred CCCcccchHHHHHHHhhhhHhhhcCCCCHHHHHH---------------------HHHHHHHHHHHHHHchhcccccc
Q 020039 259 SPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTL---------------------LQHKLVDLLKFLQKHQSTFFLSR 315 (332)
Q Consensus 259 ~pS~iYG~~HLLRLfvkLP~lL~~t~~d~~s~~~---------------------l~~~l~~fL~fL~~n~~~~F~~d 315 (332)
++....=.-+|+.+|.++-.--....|+...+.. ...+..+++.+|-+|.+.+|.++
T Consensus 125 P~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 125 PRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 4444445556666666655533344454433331 12357899999999999999754
No 74
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=20.93 E-value=1.5e+02 Score=18.21 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHchhcc
Q 020039 291 TLLQHKLVDLLKFLQKHQSTF 311 (332)
Q Consensus 291 ~~l~~~l~~fL~fL~~n~~~~ 311 (332)
.-|.+.+.+|++|+.+...+|
T Consensus 3 ~DIisTIgdfvKlI~~TV~KF 23 (25)
T PF05372_consen 3 ADIISTIGDFVKLIIETVKKF 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 357788999999998877655
No 75
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=20.93 E-value=31 Score=24.66 Aligned_cols=9 Identities=44% Similarity=1.446 Sum_probs=7.4
Q ss_pred Cccceeccc
Q 020039 93 SWDEWVGVH 101 (332)
Q Consensus 93 r~DEWV~~~ 101 (332)
-||+||+.+
T Consensus 19 dWd~wvSf~ 27 (49)
T PF06543_consen 19 DWDKWVSFD 27 (49)
T ss_pred chHHheeeC
Confidence 499999974
No 76
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.87 E-value=1.6e+02 Score=26.38 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=33.2
Q ss_pred CCCcCCCCEEEEEeC--CeeeeeEEEEEEeeCCeeEEEEEEcCCCCCccceec
Q 020039 49 SCPYQVNEKVLAFFQ--SHVYEAKVIQVQYRLKEWTFRVHYLGWNKSWDEWVG 99 (332)
Q Consensus 49 ~~~f~vge~vl~~~~--~~~YeAkIl~~~~~~~~~~Y~VHY~GWn~r~DEWV~ 99 (332)
+..|.+|+.||+..+ +..|-|.|.+++.........|+-. |=.||+|-.+
T Consensus 50 ~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~-Wy~r~~Ei~~ 101 (179)
T cd04720 50 GLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVM-WFLRWFEINP 101 (179)
T ss_pred CeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEE-EcCCHHHccc
Confidence 346999999999865 4688899999987643122234433 5566666543
No 77
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=20.75 E-value=6.3e+02 Score=30.09 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=44.1
Q ss_pred ceecCCCCCCHHHHHHHHHHhhhccCC--------------------chhhhHHHHHHHHHHHHhhh-----cCcccCCh
Q 020039 190 KLVKLPRTPNVDDILEKYCDYRSKKDG--------------------LVADSTGEIVKGLRCYFDKA-----LPIMLLYK 244 (332)
Q Consensus 190 kL~~LPa~~tV~~IL~~Y~~~~~~~~~--------------------~~~~~~~E~~~Gl~~YFn~~-----L~~~LLY~ 244 (332)
+...-|.-.+|++.+.+|.++...... .....-.-++++|+.|||-. =+.-+||.
T Consensus 607 ~~i~~pSl~tIdqmlddfr~~ik~av~~kq~~~~l~s~~~d~~~~v~~d~~f~n~Lv~~l~~yF~ll~lki~~~~~~l~~ 686 (1509)
T KOG4645|consen 607 RKITNPSLLTIDQMLDDFKEFIKVAVQMKQYQFTLASPCEDLSKPVDNDPAFENTLVKSLKFYFDLLRLKILQGLKQLFF 686 (1509)
T ss_pred cccCCCcceeHHHHHHHHHHHHHHHHHHhhhheeeecccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccchhccc
Confidence 345568889999999999998864321 11122356899999999954 24557888
Q ss_pred hhHhhHHHh
Q 020039 245 SEREQYEDS 253 (332)
Q Consensus 245 ~ER~QY~~l 253 (332)
.|+.+-.+.
T Consensus 687 ~~~dlLe~e 695 (1509)
T KOG4645|consen 687 KEPDLLEEE 695 (1509)
T ss_pred hhHHHHHHH
Confidence 887765443
No 78
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.56 E-value=1.7e+02 Score=24.91 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCCcCCCCEEEEEeC-CeeeeeEEEEEEeeCCe
Q 020039 49 SCPYQVNEKVLAFFQ-SHVYEAKVIQVQYRLKE 80 (332)
Q Consensus 49 ~~~f~vge~vl~~~~-~~~YeAkIl~~~~~~~~ 80 (332)
+..+++|+.|++.-. +..|-|.|.++....++
T Consensus 5 ~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g 37 (130)
T cd04721 5 GVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKG 37 (130)
T ss_pred CEEEECCCEEEEeCCCCCcEEEEEEEEEEcCCC
Confidence 345899999999753 57899999999886543
No 79
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=20.35 E-value=81 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHchhcccc
Q 020039 289 TLTLLQHKLVDLLKFLQKHQSTFFL 313 (332)
Q Consensus 289 s~~~l~~~l~~fL~fL~~n~~~~F~ 313 (332)
....|..+|..|.+||..+...|-.
T Consensus 44 eA~~i~~~I~~L~~fL~~iR~~YL~ 68 (87)
T PF10496_consen 44 EAYRILSHITSLRKFLKSIRKAYLS 68 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457999999999999999986655
No 80
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=20.09 E-value=3.6e+02 Score=19.68 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=43.3
Q ss_pred HHHHHHhhhccCCchhhhHHHHHHHHHHHHhhhcCcccCChhhHhhHHHhhhcCCCCCcccchHHHHHHHhhhhHhhhcC
Q 020039 204 LEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHA 283 (332)
Q Consensus 204 L~~Y~~~~~~~~~~~~~~~~E~~~Gl~~YFn~~L~~~LLY~~ER~QY~~ll~~~~~pS~iYG~~HLLRLfvkLP~lL~~t 283 (332)
|++|..++....+.....++.-...|+.+++.+-.. ....+.++ ...|+.+.+. -+...
T Consensus 1 i~~f~~~l~~~~~ls~~T~~~Y~~~l~~f~~~~~~~----------------~~~~~~~i-~~~~v~~f~~----~~~~~ 59 (84)
T PF02899_consen 1 IERFLRYLEQERGLSPNTIRSYRRDLRRFIRWLEEH----------------GIIDWEDI-TEEDVRDFLE----YLAKE 59 (84)
T ss_dssp HHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHT----------------TS-CGGG---HHHHHHHHH----HHHCT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHHHhhhhh----------------hhhhhhhh-hhHHHHHHHH----HHHcc
Confidence 567888776544333444455555555554432110 11122222 3344433333 23344
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 020039 284 KIEEETLTLLQHKLVDLLKFLQK 306 (332)
Q Consensus 284 ~~d~~s~~~l~~~l~~fL~fL~~ 306 (332)
...+.+++..+..|..|.+||.+
T Consensus 60 ~~s~~T~~~~~~alr~f~~~l~~ 82 (84)
T PF02899_consen 60 GLSPSTINRRLSALRAFFRFLYR 82 (84)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999975
No 81
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=20.04 E-value=3.3e+02 Score=24.02 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHhhhhHhhhcCCCCHHHHHHHH----HHHHHHHHHHHHchhcccc
Q 020039 268 HLLRLFVKLPELLVHAKIEEETLTLLQ----HKLVDLLKFLQKHQSTFFL 313 (332)
Q Consensus 268 HLLRLfvkLP~lL~~t~~d~~s~~~l~----~~l~~fL~fL~~n~~~~F~ 313 (332)
+|+.+|.++-+-=....|+...+..+. .....+|..|-.|..++|.
T Consensus 131 ~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~~~li~~~~~if~ 180 (182)
T cd04381 131 WLIVHMDHVIAQELETKMNIQNISIVLSPTVQISNRLLYALLTHCQELFG 180 (182)
T ss_pred HHHHHHHHHHHhCcccCCCHHHHHHHhCccccCcHHHHHHHHHHHHHHcC
Confidence 344444443333334678877776532 2456788888888888886
Done!