BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020040
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ACJ|A Chain A, Crystal Structure Of The Tldc Domain Of Oxidation
           Resistance Protein 2 From Zebrafish
          Length = 167

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 4/167 (2%)

Query: 159 EDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLRTLIRKSADLSGPCLLVVGD 218
           E S  + +E  E L   +P    G  W L +ST KHG+S++TL R   D   P LLV+ D
Sbjct: 3   EPSDLLEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKD 62

Query: 219 RQGAVFGGLLECPLKPTPKRKYQGTNQTFVFTTIYGEPRLFRPTGANRYYYMC-XXXXXX 277
             G +FG L   P K +    + GT +TF+F T Y E   ++ TG N ++          
Sbjct: 63  SDGQIFGALASEPFKVS--EGFYGTGETFLF-TFYPEFEAYKWTGDNLFFIKGDMDSLAF 119

Query: 278 XXXXXXXXXCLDGDLLSGTSGACDTFGNLCLAHNEDFELKNVELWGF 324
                     LDGDL  G + +C TFGN  L+  EDF ++++E+W F
Sbjct: 120 GGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIWSF 166


>pdb|1OQS|A Chain A, Crystal Structure Of Rv4RV7 COMPLEX
 pdb|1OQS|C Chain C, Crystal Structure Of Rv4RV7 COMPLEX
 pdb|1OQS|E Chain E, Crystal Structure Of Rv4RV7 COMPLEX
 pdb|1OQS|G Chain G, Crystal Structure Of Rv4RV7 COMPLEX
          Length = 122

 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 287 CLDGDLLSGTSGACDTFGNLCLAHNEDFELKNVELWGFSHVSQ 329
           C D DL   T   CD    +CL  N +   KN E +  SH ++
Sbjct: 75  CGDNDLCLRTVCECDRAAAICLGQNVNTYDKNYEYYSISHCTE 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,508,209
Number of Sequences: 62578
Number of extensions: 370533
Number of successful extensions: 835
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 56
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)