Query 020040
Match_columns 332
No_of_seqs 149 out of 779
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2372 Oxidation resistance p 100.0 3.9E-45 8.5E-50 333.2 14.3 168 155-325 70-241 (241)
2 smart00584 TLDc domain in TBC 100.0 4.8E-43 1E-47 309.3 17.7 162 161-325 1-165 (165)
3 COG5142 OXR1 Oxidation resista 100.0 1E-34 2.2E-39 255.4 9.6 165 159-325 32-212 (212)
4 PF07534 TLD: TLD; InterPro: 100.0 1.1E-32 2.4E-37 232.4 11.7 136 187-325 1-139 (139)
5 KOG2557 Uncharacterized conser 100.0 3.9E-31 8.5E-36 254.7 12.0 161 161-326 212-380 (427)
6 KOG2801 Probable Rab-GAPs [Int 99.9 6.3E-26 1.4E-30 215.3 -3.5 167 159-328 340-557 (559)
7 KOG4636 Uncharacterized conser 99.7 1.3E-16 2.8E-21 154.8 12.6 128 183-328 297-431 (483)
8 PF04898 Glu_syn_central: Glut 44.6 27 0.00058 34.1 3.8 101 120-220 59-165 (287)
9 PF08211 dCMP_cyt_deam_2: Cyti 14.9 2.7E+02 0.0059 23.9 4.2 59 172-230 1-75 (124)
10 PRK11750 gltB glutamate syntha 14.2 2.8E+02 0.0061 33.1 5.4 100 120-219 516-619 (1485)
No 1
>KOG2372 consensus Oxidation resistance protein [Replication, recombination and repair]
Probab=100.00 E-value=3.9e-45 Score=333.21 Aligned_cols=168 Identities=46% Similarity=0.880 Sum_probs=161.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHcCCccccCC-cceEEEeeccccccHHHHHHHhcCCCCCEEEEEEcCCCcEEeeccCCCCc
Q 020040 155 SNVREDSVFITSELYEFLQSSIPNLVKGC-QWVLLYSTLKHGISLRTLIRKSADLSGPCLLVVGDRQGAVFGGLLECPLK 233 (332)
Q Consensus 155 P~L~~~S~ILt~~~~~~L~~~LP~~~~~~-~w~LLYsSs~hG~Sl~tf~~k~~~~~gPtLLlIkd~~g~VFGay~s~~w~ 233 (332)
|.+..++.||++.++.+|+.+||++++.. .|+|+|++.+||+|+++||++|...+.|.||||||++|+|||||.+.+++
T Consensus 70 ~~~~~~~~ll~~~~~~~l~e~lp~R~q~~~pW~liyst~~hG~Sl~TlY~~~~~~~~p~lLvird~dg~vFGa~~~~~i~ 149 (241)
T KOG2372|consen 70 PDLRYKSQLLTPEMIRQLREHLPPRVQGYTPWRLIYSTEKHGFSLRTLYRSMAELDEPVLLVIRDTDGDVFGAFVSDAIR 149 (241)
T ss_pred cccccccccCCHHHHHHHHhhCCcceeeecchhhhcccccccccHHHHHHhhhcccCcEEEEEEcCCCCEeeEeecccee
Confidence 56678999999999999999999999986 99999999999999999999999988999999999999999999999999
Q ss_pred cCCCCCccCCCCeEEEEEecC--CcccccCCCCCceeEEecCCeEeeCCC-CCcceeecCCCCCccccCCCCCCCCCCCC
Q 020040 234 PTPKRKYQGTNQTFVFTTIYG--EPRLFRPTGANRYYYMCLNDLLAFGGG-GNFALCLDGDLLSGTSGACDTFGNLCLAH 310 (332)
Q Consensus 234 ~s~~~~y~G~~esFLFsll~p--~~~vy~~tg~N~~fi~~~~~gL~FGGG-g~~~L~Id~dl~~G~S~~c~TF~N~~L~~ 310 (332)
+. .+|||+++||||++ .| ++++|+|||.|++|++|+.+.|+|||| |.||||||++|.+|.|++|+||+|.+|+.
T Consensus 150 p~--dhyyGtgetFLft~-~~~~e~~vy~~TG~n~f~i~c~~dfLa~G~GgGRfgLwLD~dL~~G~S~~ceTFgN~~Ls~ 226 (241)
T KOG2372|consen 150 PN--DHYYGTGETFLFTF-FPGREFKVYRWTGDNSFFIYCDKDFLAFGGGGGRFGLWLDGDLLHGSSHPCETFGNEPLSD 226 (241)
T ss_pred cc--CCcCCCCCeEEEEe-cCCCceeEeeecCCcceEEEechhHhhhcCCCCceEEEecccccccccCCCcccCCcccCC
Confidence 96 88999999999995 65 899999999999999999999999955 89999999999999999999999999999
Q ss_pred CCCceEeEEEEEeec
Q 020040 311 NEDFELKNVELWGFS 325 (332)
Q Consensus 311 ~~~F~I~~IEVWg~~ 325 (332)
+++|.|++||||+|.
T Consensus 227 ~qdF~Iq~lElW~f~ 241 (241)
T KOG2372|consen 227 KQDFIIQDLELWGFE 241 (241)
T ss_pred cCceEEEEEEEEeeC
Confidence 999999999999984
No 2
>smart00584 TLDc domain in TBC and LysM domain containing proteins.
Probab=100.00 E-value=4.8e-43 Score=309.31 Aligned_cols=162 Identities=38% Similarity=0.725 Sum_probs=154.4
Q ss_pred CCCCCHHHHHHHHHcCCccccCCcceEEEeeccccccHHHHHHHhcCCCCCEEEEEEcCCCcEEeeccCCCCccCCCCCc
Q 020040 161 SVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLRTLIRKSADLSGPCLLVVGDRQGAVFGGLLECPLKPTPKRKY 240 (332)
Q Consensus 161 S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~tf~~k~~~~~gPtLLlIkd~~g~VFGay~s~~w~~s~~~~y 240 (332)
+.||+.++++.|+.+||.+++..+|+|||++++||+|+++|+++|.++++||||||++.++.|||||++++|+.+ ..|
T Consensus 1 ~~iL~~~~~~~l~~~lP~~~~~~~~~llyss~~~G~s~~~~~~~~~~~~~P~lliik~~~~~ifGaf~~~~w~~~--~~~ 78 (165)
T smart00584 1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTDGEVFGAYASQAWRVS--DHF 78 (165)
T ss_pred CccCCHHHHHHHHHhCCHhHhCCCeEEEEEcCcCCccHHHHHHHhcccCCCEEEEEEeCCCCEEEEEcCCCCccC--CcE
Confidence 479999999999999999999888999999999999999999999998789999999999999999999999996 779
Q ss_pred cCCCCeEEEEEecCCcccccCCCCCc-eeEEecCCeEeeCCC-CCcceeecCCCCCccccCCCCCCCCCCC-CCCCceEe
Q 020040 241 QGTNQTFVFTTIYGEPRLFRPTGANR-YYYMCLNDLLAFGGG-GNFALCLDGDLLSGTSGACDTFGNLCLA-HNEDFELK 317 (332)
Q Consensus 241 ~G~~esFLFsll~p~~~vy~~tg~N~-~fi~~~~~gL~FGGG-g~~~L~Id~dl~~G~S~~c~TF~N~~L~-~~~~F~I~ 317 (332)
||+++||||+ +.|++++|+|++.|+ +|++|++++++|||| |+++||||+++.+|++.+|+||+|++|. ..++|+|.
T Consensus 79 ~G~~~sFLF~-l~p~~~~y~~~~~n~~~~~~~~~~~~~~Ggg~g~~~l~id~~l~~g~s~~~~tf~~~~L~~~~~~f~I~ 157 (165)
T smart00584 79 YGTGESFLFQ-LNPKFVVYDWTGKNKYYYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLSTKQEDFLIL 157 (165)
T ss_pred ECCCCeEEEE-EcCCceEEcccccCcEEEEecCCCeEeecCCCCceeEEEehhhCCeEeCCCCCcCCccccCCCCCEEEE
Confidence 9999999999 689999999999997 899999999999987 5799999999999999999999999999 58999999
Q ss_pred EEEEEeec
Q 020040 318 NVELWGFS 325 (332)
Q Consensus 318 ~IEVWg~~ 325 (332)
+||||+++
T Consensus 158 ~iEVw~~g 165 (165)
T smart00584 158 DIEVWGFG 165 (165)
T ss_pred EEEEEecC
Confidence 99999985
No 3
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-34 Score=255.38 Aligned_cols=165 Identities=32% Similarity=0.615 Sum_probs=152.1
Q ss_pred CCCCCCCHHHHHHHHHcCCccccC-CcceEEEeeccccccHHHHHHHhcCCCCC-----EEEEEEcCCCcEEeeccCCCC
Q 020040 159 EDSVFITSELYEFLQSSIPNLVKG-CQWVLLYSTLKHGISLRTLIRKSADLSGP-----CLLVVGDRQGAVFGGLLECPL 232 (332)
Q Consensus 159 ~~S~ILt~~~~~~L~~~LP~~~~~-~~w~LLYsSs~hG~Sl~tf~~k~~~~~gP-----tLLlIkd~~g~VFGay~s~~w 232 (332)
.+..||++++...|+..||.+++. ..|+||||..+||+|++|||+.|..-+.| +||+|||++|.|||||.++.+
T Consensus 32 ~K~~llt~e~~~~ire~lp~Ry~~~t~W~llySl~~~G~Sl~t~y~~~~~~~~~frrvg~VLa~rd~dgd~FGaf~~d~~ 111 (212)
T COG5142 32 YKASLLTEEIVTRIRESLPDRYKYSTSWRLLYSLFENGFSLRTFYESFGENEWPFRRVGFVLACRDKDGDLFGAFFEDRI 111 (212)
T ss_pred hhcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcchhHHHHHHHhCcccCcccCceEEEEEEcCCCCEeeeechhhe
Confidence 456899999999999999999996 78999999999999999999999976667 999999999999999999999
Q ss_pred ccCCCCCccCCCCeEEEEEe--------cCCcccccCCCCCceeEEecCCeEeeCCC-CCcceeecCCCCCccccCCCCC
Q 020040 233 KPTPKRKYQGTNQTFVFTTI--------YGEPRLFRPTGANRYYYMCLNDLLAFGGG-GNFALCLDGDLLSGTSGACDTF 303 (332)
Q Consensus 233 ~~s~~~~y~G~~esFLFsll--------~p~~~vy~~tg~N~~fi~~~~~gL~FGGG-g~~~L~Id~dl~~G~S~~c~TF 303 (332)
++. .+|||.++||||++. ..++.+|+.+|.+..-+||++++|+|||| |+|+||||..|+.|.|++|+||
T Consensus 112 ~pa--~hy~G~~e~FLwk~~~~p~~~~~~k~~~~yp~~g~~~f~iYCt~~FlafG~g~grygLl~d~sLl~g~S~p~~tf 189 (212)
T COG5142 112 RPA--RHYYGRDEMFLWKAARRPADRLADKEVAVYPISGGKGFGIYCTPDFLAFGCGGGRYGLLIDKSLLDGESHPVETF 189 (212)
T ss_pred ecc--CCCCCCccEEEEeeccCCccccCcceeEEeEeecCCceEEEEchHHhhhcCCCCcEEEEecCcccccccCCCccc
Confidence 995 889999999999951 23588999999999999999999999977 7899999999999999999999
Q ss_pred CCCCCCCCCC-ceEeEEEEEeec
Q 020040 304 GNLCLAHNED-FELKNVELWGFS 325 (332)
Q Consensus 304 ~N~~L~~~~~-F~I~~IEVWg~~ 325 (332)
+|.+|+.... |+|..+|||.++
T Consensus 190 gN~~Ls~~g~~f~Iv~lElW~v~ 212 (212)
T COG5142 190 GNCLLSSKGHFFRIVYLELWLVQ 212 (212)
T ss_pred cccccccCCCceEEEEEEEEeeC
Confidence 9999998655 599999999874
No 4
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [].; PDB: 4ACJ_A.
Probab=100.00 E-value=1.1e-32 Score=232.43 Aligned_cols=136 Identities=37% Similarity=0.737 Sum_probs=99.5
Q ss_pred EEEeeccccccHHHHHHHhcCCCCCEEEEEEcCCCcEEeeccCCCCccCCCCCccCCCCeEEEEEecCCcccccCCCCCc
Q 020040 187 LLYSTLKHGISLRTLIRKSADLSGPCLLVVGDRQGAVFGGLLECPLKPTPKRKYQGTNQTFVFTTIYGEPRLFRPTGANR 266 (332)
Q Consensus 187 LLYsSs~hG~Sl~tf~~k~~~~~gPtLLlIkd~~g~VFGay~s~~w~~s~~~~y~G~~esFLFsll~p~~~vy~~tg~N~ 266 (332)
|||++++||+|+++|+++|.+ ++|+|+||++.++.|||||++++|+.+ ...|+|+.++|||+ +.|.+++|+|++.|.
T Consensus 1 Lly~s~~dG~s~~~f~~~~~~-~~~~l~iv~t~~g~iFG~y~~~~~~~~-~~~~~~~~~~FlF~-l~~~~~~~~~~~~~~ 77 (139)
T PF07534_consen 1 LLYSSSRDGFSFNTFHSKCDG-KGPTLLIVKTSDGQIFGAYTSQPWKSS-NKGYFGDSESFLFS-LEPKFKIFKWTGKNQ 77 (139)
T ss_dssp EEEEHHHH-S-HHHHHHHHTT--S-EEEEEEETTS-EEEEEESS------SS--B--TT-EEEE--SSS-EEEE--SS--
T ss_pred CcCccchhCcCHHHHHHhcCC-CCCEEEEEECCCCcEEEEEeCCccccc-CccccCCCCeEEEE-eccccceeecccccc
Confidence 799999999999999999996 699999999999999999999999875 34599999999999 599999999999999
Q ss_pred eeEEecCCeEeeCCCC-CcceeecCCCCCccccCCCCCCCCCCC--CCCCceEeEEEEEeec
Q 020040 267 YYYMCLNDLLAFGGGG-NFALCLDGDLLSGTSGACDTFGNLCLA--HNEDFELKNVELWGFS 325 (332)
Q Consensus 267 ~fi~~~~~gL~FGGGg-~~~L~Id~dl~~G~S~~c~TF~N~~L~--~~~~F~I~~IEVWg~~ 325 (332)
.++++...+|+||+++ +++||||.++..|.+..|.||++++|. ....|+|.+||||+|+
T Consensus 78 ~~~~~~~~~~~fG~~~~~~~l~i~~~~~~~~~~~~~ty~~~~l~~~~~~~f~i~~iEV~~~g 139 (139)
T PF07534_consen 78 NYINCNNQGLGFGGGSNGFDLWIDSDFNSGSSSHSETYGNPPLSNDGQESFDIDEIEVWGLG 139 (139)
T ss_dssp --EEEETTEEEES-SSSS-SEEEETTS-EEEE--BTTTTB--SS--SSSEEEEEEEEEEE--
T ss_pred eeeeccCCcceEeecCCceEEEEeCCCCcEEEeCCCccCCCcccCCCCCCcEEEEEEEEEEC
Confidence 9999999999999975 899999999999999999999999999 7899999999999986
No 5
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=99.97 E-value=3.9e-31 Score=254.71 Aligned_cols=161 Identities=27% Similarity=0.574 Sum_probs=145.3
Q ss_pred CCCCCHHHHHHHHHcCCccccCCcceEEEeeccccccHHHHHHHhcCCCCCEEEEEEcCCCcEEeeccCCCCccCCCCCc
Q 020040 161 SVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLRTLIRKSADLSGPCLLVVGDRQGAVFGGLLECPLKPTPKRKY 240 (332)
Q Consensus 161 S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~tf~~k~~~~~gPtLLlIkd~~g~VFGay~s~~w~~s~~~~y 240 (332)
--+|..+..-.|...||-.-+ .+|++||+++.||.|+++|.-++.+ .|||++||+|++|+|||+|++++|.. +..|
T Consensus 212 ~~~i~~~~~l~in~~lp~~~r-~~wr~lysss~~gqsfSt~l~~~~~-~gp~v~vI~d~d~~vFGgyASq~we~--~pQF 287 (427)
T KOG2557|consen 212 RLLIKKEYALHINGALPHHER-VEWKLLYSSSVHGQSFSTFLGHTSG-MGPSVLIIKDTEGYVFGGYASQPWER--YPQF 287 (427)
T ss_pred cceeecchhheecccCCcchh-hceeeeeeecccccchhhhhhhccC-CCCeEEEEEcCCCceecccccCcccc--cCcc
Confidence 345556677777778885433 6899999999999999999999987 59999999999999999999999998 4999
Q ss_pred cCCCCeEEEEEecCCcccccCCCCCceeEEec------CCeEeeCCC-CCcceeecCCCCCccccC-CCCCCCCCCCCCC
Q 020040 241 QGTNQTFVFTTIYGEPRLFRPTGANRYYYMCL------NDLLAFGGG-GNFALCLDGDLLSGTSGA-CDTFGNLCLAHNE 312 (332)
Q Consensus 241 ~G~~esFLFsll~p~~~vy~~tg~N~~fi~~~------~~gL~FGGG-g~~~L~Id~dl~~G~S~~-c~TF~N~~L~~~~ 312 (332)
+||.+||||+ +.|+..+|++||.|++|+|.+ ++||+|||- +.|+||||.++..|+|.+ |.||+.+.|+...
T Consensus 288 ~Gd~~~fLfq-L~Pkma~y~aTgyn~~yqylN~~QQtiPNGLGmGGq~n~fgL~Id~sFg~Gqs~e~cTty~spqLSk~~ 366 (427)
T KOG2557|consen 288 YGDMKSFLFQ-LNPKMAIYRATGYNTNYQYLNFTQQTIPNGLGMGGQINHFGLFIDASFGQGQSFECCTTYESPQLSKTS 366 (427)
T ss_pred CCccceeeee-ecchheeecccCCccceEEeccccccCCCccccCcccceeeEEEEeecCCCccccccccCCCccccccc
Confidence 9999999999 799999999999999999954 689999997 689999999999999976 6888899999999
Q ss_pred CceEeEEEEEeecc
Q 020040 313 DFELKNVELWGFSH 326 (332)
Q Consensus 313 ~F~I~~IEVWg~~~ 326 (332)
+|+|..||||+++.
T Consensus 367 ~fqi~~iEvWavgD 380 (427)
T KOG2557|consen 367 RFQIEVIEVWAVGD 380 (427)
T ss_pred cccceEEEEEecCC
Confidence 99999999999998
No 6
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.3e-26 Score=215.27 Aligned_cols=167 Identities=32% Similarity=0.486 Sum_probs=147.0
Q ss_pred CCCCCCCHHHHHHHHHcCCccccCCcceEEEeeccccccHHHHHHHhcCCCCCEEEEEEcCCCcEEeeccCCCCccC---
Q 020040 159 EDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLRTLIRKSADLSGPCLLVVGDRQGAVFGGLLECPLKPT--- 235 (332)
Q Consensus 159 ~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~tf~~k~~~~~gPtLLlIkd~~g~VFGay~s~~w~~s--- 235 (332)
..|.|++...+..||.|+|.++..+++-|||++-.||+|+.+||-.|++ +.||||+|+++...|.|||++..|...
T Consensus 340 frseivsvremrdiwswvperfalcqplllfsslqhgyslarfyfqceg-heptllliktmqkevcgaylstdwsernkf 418 (559)
T KOG2801|consen 340 FRSEIVSVREMRDIWSWVPERFALCQPLLLFSSLQHGYSLARFYFQCEG-HEPTLLLIKTMQKEVCGAYLSTDWSERNKF 418 (559)
T ss_pred hhhhhhhHHHHhhHHHhhhHHHhhhhHHHHHHHhhcchhhhhheeeccC-CCCeeehHHHHHHHHhhHhcccchhhhccc
Confidence 4689999999999999999999999999999999999999999999998 499999999999999999999999986
Q ss_pred -CCCCccCCCCeEEEEEecCCcccccCCC-----------------------------------------------CCce
Q 020040 236 -PKRKYQGTNQTFVFTTIYGEPRLFRPTG-----------------------------------------------ANRY 267 (332)
Q Consensus 236 -~~~~y~G~~esFLFsll~p~~~vy~~tg-----------------------------------------------~N~~ 267 (332)
.+-.|||+++||+|+ +.|+++-|.|.- ....
T Consensus 419 ggklgffgtgecfvfr-lqpevqryewvvikhpeltkppplmaaeptaplshsassdpadrlspflaarhfnlpsktesm 497 (559)
T KOG2801|consen 419 GGKLGFFGTGECFVFR-LQPEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLSPFLAARHFNLPSKTESM 497 (559)
T ss_pred CceecccccccEEEEE-echhhheeeEEEEcCcccCCCCCcccCCCCCCCCccccCCchhhcChHHHHHhcCCCcchhHH
Confidence 233699999999999 688877776520 0123
Q ss_pred eEEecCCeEeeCCCCCcceeecCCCCCccccCCCCCCCCCCCCCCCceEeEEEEEeeccCC
Q 020040 268 YYMCLNDLLAFGGGGNFALCLDGDLLSGTSGACDTFGNLCLAHNEDFELKNVELWGFSHVS 328 (332)
Q Consensus 268 fi~~~~~gL~FGGGg~~~L~Id~dl~~G~S~~c~TF~N~~L~~~~~F~I~~IEVWg~~~~~ 328 (332)
||....+.+..||||+-+||||+|+++|.+.+|+||+|.+|+ .++|-|..||.|||+++.
T Consensus 498 fmaggsdclivgggggqalyidgdlnrgrtshcdtfnnqplc-senfliaaveawgfqdpd 557 (559)
T KOG2801|consen 498 FMAGGSDCLIVGGGGGQALYIDGDLNRGRTSHCDTFNNQPLC-SENFLIAAVEAWGFQDPD 557 (559)
T ss_pred HhcCCCceEEEcCCCceeEEecccccCCccccccccCCCccc-hhhHHHHHHHHhcCCCCC
Confidence 444556789999999999999999999999999999999998 678999999999999875
No 7
>KOG4636 consensus Uncharacterized conserved protein with TLDc domain [Function unknown]
Probab=99.70 E-value=1.3e-16 Score=154.85 Aligned_cols=128 Identities=23% Similarity=0.344 Sum_probs=107.6
Q ss_pred CcceEEEeeccccccHHHHHHHhcCCCCCEEEEEEcCCCcEEeeccCCCCccCCCCCccCCCCeEEEEEecCCcccccCC
Q 020040 183 CQWVLLYSTLKHGISLRTLIRKSADLSGPCLLVVGDRQGAVFGGLLECPLKPTPKRKYQGTNQTFVFTTIYGEPRLFRPT 262 (332)
Q Consensus 183 ~~w~LLYsSs~hG~Sl~tf~~k~~~~~gPtLLlIkd~~g~VFGay~s~~w~~s~~~~y~G~~esFLFsll~p~~~vy~~t 262 (332)
..|+|||.+..||...++|.+++.+|+||||+|+++.++++.-.-+++.|+.+ +.+||...+-+|+ +.|.|+++..+
T Consensus 297 shwtlLY~S~~HG~g~NRf~~~V~gYrgPtlvi~~tkder~~viA~~qew~e~--~~~fgG~~~~~f~-i~P~f~~~~~s 373 (483)
T KOG4636|consen 297 SHWTLLYTSLQHGIGTNRFETLVFGYRGPTLVIFRTKDERVVVIAADQEWRES--GNRFGGTFTSFFE-IVPNFRRIDGS 373 (483)
T ss_pred CceeecchhhhhccchhhHHHHhccccCCeEEEEEecCCcEEEEeechhhhhh--ccccccccceeEE-eecceEEecCC
Confidence 68999999999999999999999999999999999999999999999999997 6666666666799 68999888754
Q ss_pred CCCceeEEe------cCCeEeeCCC-CCcceeecCCCCCccccCCCCCCCCCCCCCCCceEeEEEEEeeccCC
Q 020040 263 GANRYYYMC------LNDLLAFGGG-GNFALCLDGDLLSGTSGACDTFGNLCLAHNEDFELKNVELWGFSHVS 328 (332)
Q Consensus 263 g~N~~fi~~------~~~gL~FGGG-g~~~L~Id~dl~~G~S~~c~TF~N~~L~~~~~F~I~~IEVWg~~~~~ 328 (332)
.+++|| .+.||.|||. |+..|.||+||.+-.-- .-.-.|.+|||||+++..
T Consensus 374 ---~N~~Y~nl~~rg~p~Gl~fg~tlgne~i~idedF~kItvl------------pveA~ildIEvWGcgg~~ 431 (483)
T KOG4636|consen 374 ---ANSIYCNLKLRGSPYGLSFGNTLGNEEIKIDEDFDKITVL------------PVEAEILDIEVWGCGGAG 431 (483)
T ss_pred ---CceEEEeccccCCccceecCCCCCCceeeeccchhhcccc------------chhcceeeEEEeccCCcc
Confidence 455665 3689999987 78899999998765442 133478999999999754
No 8
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=44.56 E-value=27 Score=34.12 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=53.0
Q ss_pred ccCCCCcccccCCCCCCCCchhhhhcCCCCCCccCCCCCCCCCCCCHHHHHHHHHcCCccccCCcceEEEeeccccccHH
Q 020040 120 VSVDDDDKDCACGSTSSDSDAYAEATDLPSPTKLLSNVREDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLR 199 (332)
Q Consensus 120 ~~~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~lP~L~~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~ 199 (332)
|-||++|.+-+...-+..+-.=++.|-+......-..+.-.|.||+...++.|...-...++......+|.....+-++.
T Consensus 59 VTNPPID~iRE~~vmSl~~~lG~~~n~l~~~~~~~~~l~l~sPiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~~~~~L~ 138 (287)
T PF04898_consen 59 VTNPPIDPIREELVMSLRTYLGPRPNILEETPEHARRLELDSPILSNGQLEKLRSLDDPGFKAATLDATFPAEGGDEGLE 138 (287)
T ss_dssp SSS----TTTTGGG-B--EEES--S-TTS-SGGGC-CEEESSSB--HHHHHHHHHH--CCCCEEEEESEEESTTSTTCHH
T ss_pred ccCCCcchhhhhheeecceeeCCCCCCCCCCCCCceEEEecCCEECHHHHHHHHHhhccCCCccEEEEEEECCcChhHHH
Confidence 67888888777533221111111111111112234566778999999999999986555666678888999887777776
Q ss_pred HHHHHhcC------CCCCEEEEEEcCC
Q 020040 200 TLIRKSAD------LSGPCLLVVGDRQ 220 (332)
Q Consensus 200 tf~~k~~~------~~gPtLLlIkd~~ 220 (332)
.-..++.. ..|-.|||+.|..
T Consensus 139 ~aL~~l~~ea~~Av~~G~~ilILsDr~ 165 (287)
T PF04898_consen 139 EALDRLCEEAEAAVREGANILILSDRN 165 (287)
T ss_dssp HHHHHHHHHHHHHHHCT-SEEEEESTC
T ss_pred HHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 54443331 1477888886665
No 9
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=14.87 E-value=2.7e+02 Score=23.89 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=24.0
Q ss_pred HHHcCCccccCCcc---eEEEeeccccccHHH---HH----HHhcC-----CCCCEEEEEEcCCCcEE-eeccCC
Q 020040 172 LQSSIPNLVKGCQW---VLLYSTLKHGISLRT---LI----RKSAD-----LSGPCLLVVGDRQGAVF-GGLLEC 230 (332)
Q Consensus 172 L~~~LP~~~~~~~w---~LLYsSs~hG~Sl~t---f~----~k~~~-----~~gPtLLlIkd~~g~VF-Gay~s~ 230 (332)
|..+||..+.-.++ .+|..-..||+.+.. +. +.... .+.|.=+.+++.+|.|| |.|+..
T Consensus 1 L~~~LP~~FGP~DL~i~~~Ll~~~~~~l~~~~~d~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~~G~y~En 75 (124)
T PF08211_consen 1 LHEYLPDAFGPKDLGITPLLLEPQDHGLALESEDPLVQAALEAANRSYAPYSKCPSGVALLTSDGRIYTGRYAEN 75 (124)
T ss_dssp HHHHSTT--SGGGGTS-S-BTS----------SSHHHHHHHHHHCT-B-TTT---EEEEEEETTS-EEEEE-B--
T ss_pred CcccCcCCCCccccCCcccccCCCCCccccCCccHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEee
Confidence 45567766643333 677777777776522 11 11211 14678888999999988 888874
No 10
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=14.25 E-value=2.8e+02 Score=33.15 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=57.1
Q ss_pred ccCCCCcccccCCCCCCCCchhhhhcCCCCCCccCCCCCCCCCCCCHHHHHHHHHcCCccccCCcceEEEeeccccc--c
Q 020040 120 VSVDDDDKDCACGSTSSDSDAYAEATDLPSPTKLLSNVREDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGI--S 197 (332)
Q Consensus 120 ~~~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~lP~L~~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~--S 197 (332)
|-||++|.+-+.-.-+..+-.=++.|-+......-..+.-.+.||+...++.|.......++......+|....+|. .
T Consensus 516 VTNPPID~iRE~~vmSl~~~lG~~~n~l~~~~~~~~~l~l~~PiL~~~~~~~l~~~~~~~~~~~~l~~~f~~~~~~L~~a 595 (1485)
T PRK11750 516 VTNPPIDPLREAHVMSLATCIGREMNVFCETEGHAHRVIFKSPVLSYSDFKQLTTLDEEHYRADTLDLNYDPEETGLEAA 595 (1485)
T ss_pred ccCCCCchhhhhceeeeeeeeCCCcCcCCCCcccCCeEEeCCceeCHHHHHHHHhccccCCceEEEEEEEeCChHHHHHH
Confidence 68898888777533222222112222111112244566778899999999999765424455567888887522222 2
Q ss_pred HHHHHHHhcC--CCCCEEEEEEcC
Q 020040 198 LRTLIRKSAD--LSGPCLLVVGDR 219 (332)
Q Consensus 198 l~tf~~k~~~--~~gPtLLlIkd~ 219 (332)
+..+.+...+ .+|-.|||+.|.
T Consensus 596 L~~L~~~A~~Av~~G~~ilILSDr 619 (1485)
T PRK11750 596 IKRLCDEAEQAVRDGTVLLVLSDR 619 (1485)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3334443332 147888888775
Done!