Query 020040
Match_columns 332
No_of_seqs 149 out of 779
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4acj_A WU\:FB25H12 protein,; i 100.0 1.5E-48 5E-53 344.6 18.0 165 158-325 2-167 (167)
2 1ea0_A Glutamate synthase [NAD 14.9 1.4E+02 0.0046 34.2 4.7 99 120-220 506-610 (1479)
3 3bbn_U Ribosomal protein S21; 13.6 39 0.0013 29.7 0.0 17 40-56 8-24 (190)
4 1ofd_A Ferredoxin-dependent gl 10.2 2.3E+02 0.0078 32.5 4.7 97 120-220 502-604 (1520)
5 2g48_C Islet amyloid polypepti 7.9 1.4E+02 0.0046 19.6 1.0 13 8-20 8-20 (37)
6 3tq2_A KE1; parallel three hel 7.8 1.3E+02 0.0046 18.9 0.9 8 2-9 4-11 (36)
7 1xwj_B Talin, metavinculin; ce 7.3 1.7E+02 0.0059 17.2 1.2 11 7-17 12-22 (26)
8 3rf3_C Invasin IPAA, 70 kDa an 7.2 2E+02 0.0069 17.3 1.4 13 5-17 13-25 (29)
9 3bqa_A Sensor protein PHOQ; hi 6.5 2.5E+02 0.0084 23.7 2.2 24 209-232 39-62 (148)
10 4fyl_A Ribosome hibernation pr 4.4 3.5E+02 0.012 20.3 1.8 13 3-15 15-27 (95)
No 1
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
Probab=100.00 E-value=1.5e-48 Score=344.60 Aligned_cols=165 Identities=42% Similarity=0.742 Sum_probs=159.4
Q ss_pred CCCCCCCCHHHHHHHHHcCCccccCCcceEEEeeccccccHHHHHHHhcCCCCCEEEEEEcCCCcEEeeccCCCCccCCC
Q 020040 158 REDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLRTLIRKSADLSGPCLLVVGDRQGAVFGGLLECPLKPTPK 237 (332)
Q Consensus 158 ~~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~tf~~k~~~~~gPtLLlIkd~~g~VFGay~s~~w~~s~~ 237 (332)
+++|.||+.+++++|+.+||.+++..+|+|||++++||+|+++|+++|.++++||||||+|++|.|||||++++|+.+
T Consensus 2 n~~S~iLt~~~~~~L~~~LP~~~~~~~w~LlYss~~hG~S~~~~~~~~~~~~~ptllvik~~~g~vFGaf~s~~w~~~-- 79 (167)
T 4acj_A 2 NEPSDLLEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVS-- 79 (167)
T ss_dssp CCCCSSCCHHHHHHHHTTSCGGGTTCCCEEEEEHHHHCSCHHHHHHHHTTCCSCEEEEEEETTSCEEEEEESSCCCCC--
T ss_pred CCCCCcCCHHHHHHHHHHCchhhccCCCeEEEEeccCCccHHHHHHHhcCCCCCEEEEEEcCCceEEEEEeCCccccc--
Confidence 468999999999999999999998899999999999999999999999987799999999999999999999999996
Q ss_pred CCccCCCCeEEEEEecCCcccccCCCCCceeEEecCCeEeeCCC-CCcceeecCCCCCccccCCCCCCCCCCCCCCCceE
Q 020040 238 RKYQGTNQTFVFTTIYGEPRLFRPTGANRYYYMCLNDLLAFGGG-GNFALCLDGDLLSGTSGACDTFGNLCLAHNEDFEL 316 (332)
Q Consensus 238 ~~y~G~~esFLFsll~p~~~vy~~tg~N~~fi~~~~~gL~FGGG-g~~~L~Id~dl~~G~S~~c~TF~N~~L~~~~~F~I 316 (332)
..|||+++||||+ +.|++++|+|++.|++||+|++++|+|||| |+++||||++|.+|+|.+|+||+|++|+..++|+|
T Consensus 80 ~~~~G~~~sFLF~-l~p~~~~y~~tg~N~~f~~~~~~~l~~Ggg~g~~~L~id~~l~~G~s~~c~Tf~n~~L~~~~~F~i 158 (167)
T 4acj_A 80 EGFYGTGETFLFT-FYPEFEAYKWTGDNLFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFV 158 (167)
T ss_dssp SSCBCCTTCEEEE-CSSSCEEEECCSSCCCCEEEETTEEEESCSSSSCSEEEETTSCEEEECCBTTTTBCCSSSSSEEEE
T ss_pred CcccCCCCeEEEE-EcCCCccccccCCCceEEEeCCCccccCCCCCceEEEEeCCCCCEEeCCCCCCCCcccCCCCceEE
Confidence 8999999999999 799999999999999999999999999998 78999999999999999999999999999999999
Q ss_pred eEEEEEeec
Q 020040 317 KNVELWGFS 325 (332)
Q Consensus 317 ~~IEVWg~~ 325 (332)
.+||||+|.
T Consensus 159 ~~vEvW~~~ 167 (167)
T 4acj_A 159 QDIEIWSFE 167 (167)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEEC
Confidence 999999983
No 2
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=14.87 E-value=1.4e+02 Score=34.15 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=58.3
Q ss_pred ccCCCCcccccCCCCCCCCchhhhhcCCCCCCccCCCCCCCCCCCCHHHHHHHHHcCCccccCCcceEEEeeccccccHH
Q 020040 120 VSVDDDDKDCACGSTSSDSDAYAEATDLPSPTKLLSNVREDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLR 199 (332)
Q Consensus 120 ~~~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~lP~L~~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~ 199 (332)
|-||++|.+-+..--+..+-.=++.|=+......-..+.-.|.||+...++.|... + .++......+|.....+-.|.
T Consensus 506 VTNPpiD~iRE~~v~sl~~~~G~~~n~l~~~~~~~~~~~l~~Pil~~~~~~~l~~~-~-~~~~~~~~~~~~~~~g~~~l~ 583 (1479)
T 1ea0_A 506 VTNPPIDSLRERRVMSLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMRDY-M-GDTAAEIDATFPVDGGPEALR 583 (1479)
T ss_dssp SSSCCCCTTTTGGGCCCCEEESCCSCTTCCSGGGSCSEEESCSBCCHHHHHHHHHH-H-GGGEEEEECEEESTTCTTHHH
T ss_pred ccCCCccchhhhceeeccccccCCcccCCCCccCCCEEEeCCCcCCHHHHHHHhcc-C-CCceEEEEEEEECCCChhHHH
Confidence 67888888777533322222222222111112244567778999999999999765 3 566678889997664444454
Q ss_pred HHHHH-hcCC-----CCCEEEEEEcCC
Q 020040 200 TLIRK-SADL-----SGPCLLVVGDRQ 220 (332)
Q Consensus 200 tf~~k-~~~~-----~gPtLLlIkd~~ 220 (332)
.-+.+ |.+. .|-.|||+.|..
T Consensus 584 ~al~~l~~~a~~av~~g~~iliLsDr~ 610 (1479)
T 1ea0_A 584 DALRRIRQETEDAVRGGATHVILTDEA 610 (1479)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 43222 2211 377888888764
No 3
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=13.64 E-value=39 Score=29.74 Aligned_cols=17 Identities=47% Similarity=0.702 Sum_probs=0.0
Q ss_pred CccccceeeecccCcCC
Q 020040 40 GKSLTSFFSFISPLASS 56 (332)
Q Consensus 40 ~~s~~s~~~~~~~~~~~ 56 (332)
..||++||||++|+-..
T Consensus 8 ~~s~~~f~sf~~~sk~~ 24 (190)
T 3bbn_U 8 MASLSSFFSFLLPSKPP 24 (190)
T ss_dssp -----------------
T ss_pred hhhHHHHHHHhccCCCC
Confidence 35899999999996543
No 4
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=10.24 E-value=2.3e+02 Score=32.45 Aligned_cols=97 Identities=15% Similarity=0.066 Sum_probs=56.6
Q ss_pred ccCCCCcccccCCCCCCCCchhhhhcCCCCCCccCCCCCCCCCCCCHHHHHHHHHcCCccccCCcceEEEeeccccccHH
Q 020040 120 VSVDDDDKDCACGSTSSDSDAYAEATDLPSPTKLLSNVREDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLR 199 (332)
Q Consensus 120 ~~~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~lP~L~~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~ 199 (332)
|-||++|.+-+...-+..+-.=++.|=+......-..|.-.|.||+...++.|.. + .++......+|... .+-.|.
T Consensus 502 VTNPpiD~iRE~~v~Sl~~~~G~~~n~l~~~~~~~~~~~l~~Pil~~~~~~~~~~--~-~~~~~~~~~~~~~~-g~~~l~ 577 (1520)
T 1ofd_A 502 VTNPPIDPLRENLVMSLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKT--G-QLQVAEVSTLYDLD-GVNSLE 577 (1520)
T ss_dssp SSSCCCCTTTTGGGCBCCEEESCCCCSSSCCGGGGCEEEESCSBCCHHHHHHHHH--S-SSCEEEEECEEECS-SSCCHH
T ss_pred ccCCCccchhhhheeeccccccCCCCCCCCCcCCCCEEEeCCCccCHHHHHHHhc--C-CCceEEEEEEEeCC-chhHHH
Confidence 6788888887753322222111122211111223445677899999999999987 3 56667888899765 223444
Q ss_pred H----HHHHhcC--CCCCEEEEEEcCC
Q 020040 200 T----LIRKSAD--LSGPCLLVVGDRQ 220 (332)
Q Consensus 200 t----f~~k~~~--~~gPtLLlIkd~~ 220 (332)
. +.+.... ..|-.|||+.|..
T Consensus 578 ~al~~l~~~a~~av~~g~~iliLsDr~ 604 (1520)
T 1ofd_A 578 DALTNLVKTAIATVQAGAEILVLTDRP 604 (1520)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESSG
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3 2222221 1478899888875
No 5
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=7.85 E-value=1.4e+02 Score=19.55 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHhhhcCCC
Q 020040 8 VTEKLSRLFADSP 20 (332)
Q Consensus 8 ~~~~~~~~~~~s~ 20 (332)
|++|||.+|+.|-
T Consensus 8 ~t~rla~~LsrSg 20 (37)
T 2g48_C 8 ATQRLANFLVHSS 20 (37)
T ss_pred HHHHHHHHHHhhc
Confidence 7899999999884
No 6
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=7.77 E-value=1.3e+02 Score=18.85 Aligned_cols=8 Identities=50% Similarity=0.704 Sum_probs=5.1
Q ss_pred chhhHHHH
Q 020040 2 YSIKEKVT 9 (332)
Q Consensus 2 ~~~k~~~~ 9 (332)
.|+||||+
T Consensus 4 salkekvs 11 (36)
T 3tq2_A 4 SALKEKVS 11 (36)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 36777765
No 7
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=7.27 E-value=1.7e+02 Score=17.18 Aligned_cols=11 Identities=55% Similarity=0.779 Sum_probs=7.9
Q ss_pred HHHHHHHhhhc
Q 020040 7 KVTEKLSRLFA 17 (332)
Q Consensus 7 ~~~~~~~~~~~ 17 (332)
.|++|+++++|
T Consensus 12 ~v~ekV~~vla 22 (26)
T 1xwj_B 12 KVSEKVSHVLA 22 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47778887765
No 8
>3rf3_C Invasin IPAA, 70 kDa antigen; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Shigella flexneri}
Probab=7.16 E-value=2e+02 Score=17.26 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=10.5
Q ss_pred hHHHHHHHHhhhc
Q 020040 5 KEKVTEKLSRLFA 17 (332)
Q Consensus 5 k~~~~~~~~~~~~ 17 (332)
-.||++-||+|..
T Consensus 13 skkvtnslsnlis 25 (29)
T 3rf3_C 13 SKKVTNSLSNLIS 25 (29)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3589999999864
No 9
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=6.49 E-value=2.5e+02 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=18.3
Q ss_pred CCCEEEEEEcCCCcEEeeccCCCC
Q 020040 209 SGPCLLVVGDRQGAVFGGLLECPL 232 (332)
Q Consensus 209 ~gPtLLlIkd~~g~VFGay~s~~w 232 (332)
..|||++|.|++|.+.=.=-..||
T Consensus 39 n~ptLvlIYDe~G~lLW~qr~vP~ 62 (148)
T 3bqa_A 39 QSPTMTLIYDENGQLLWAQRDVPW 62 (148)
T ss_dssp TCSCEEEEECTTSCEEEESSCCHH
T ss_pred CCCeEEEEEcCCCcEEEecCcchH
Confidence 479999999999998755444443
No 10
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=4.44 E-value=3.5e+02 Score=20.27 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHhh
Q 020040 3 SIKEKVTEKLSRL 15 (332)
Q Consensus 3 ~~k~~~~~~~~~~ 15 (332)
|||+-|.+||++|
T Consensus 15 al~~~v~~Kl~kl 27 (95)
T 4fyl_A 15 SMQDYVHSKFDKL 27 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5777777777775
Done!