Query 020040
Match_columns 332
No_of_seqs 149 out of 779
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 10:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020040.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020040hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ea0a2 c.1.4.1 (A:423-1193) A 18.8 48 0.0035 32.7 4.7 92 120-219 84-187 (771)
2 d2csba2 a.60.2.4 (A:294-350) T 12.6 39 0.0028 21.7 1.4 19 2-20 12-30 (57)
3 d1kxpd3 a.126.1.1 (D:405-473) 7.5 95 0.0069 21.1 1.9 17 3-19 13-29 (69)
4 d1ofda2 c.1.4.1 (A:431-1239) A 7.0 1.9E+02 0.014 28.4 4.7 91 120-220 72-174 (809)
5 d1ea0a3 d.153.1.1 (A:1-422) Al 6.8 2.8E+02 0.021 24.7 5.6 63 173-245 296-360 (422)
6 d1co4a_ g.47.1.1 (A:) Zinc dom 4.8 93 0.0067 19.3 0.5 21 56-76 15-35 (42)
7 d1umqa_ a.4.1.12 (A:) Photosyn 4.7 1.6E+02 0.012 18.7 1.8 41 164-208 17-57 (60)
8 d1k12a_ b.18.1.15 (A:) Fucose 4.2 2.2E+02 0.016 20.5 2.6 13 312-324 141-153 (158)
9 d2ywqa1 d.204.1.1 (A:1-95) Rib 4.2 1.8E+02 0.013 19.7 1.8 14 3-16 16-29 (95)
10 d1ofda3 d.153.1.1 (A:1-430) Al 4.1 2.7E+02 0.02 24.9 3.5 48 198-250 315-365 (430)
No 1
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=18.79 E-value=48 Score=32.73 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=57.4
Q ss_pred ccCCCCcccccCCCCCCC------CchhhhhcCCCCCCccCCCCCCCCCCCCHHHHHHHHHcCCccccCCcceEEEeecc
Q 020040 120 VSVDDDDKDCACGSTSSD------SDAYAEATDLPSPTKLLSNVREDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLK 193 (332)
Q Consensus 120 ~~~~~~~~~~~~~r~~~~------~~~~~e~~~~~~~~~~lP~L~~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~ 193 (332)
|-||++|.+-+.---+.. .+.+++..+ .-..+.-.|.||+...+..|..... .+......+|..+.
T Consensus 84 VTNPPID~iRE~~VmSl~~~lG~~~Nil~~~~~------~~~~l~l~sPILs~~e~~~i~~~~~--~~~~~id~~f~~~~ 155 (771)
T d1ea0a2 84 VTNPPIDSLRERRVMSLKTRLGNLGNILDEDET------QTRLLQLESPVLTTAEFRAMRDYMG--DTAAEIDATFPVDG 155 (771)
T ss_dssp SSSCCCCTTTTGGGCCCCEEESCCSCTTCCSGG------GSCSEEESCSBCCHHHHHHHHHHHG--GGEEEEECEEESTT
T ss_pred cCCCCccHHHhhccccccceeCCCCCCCCCCcc------CCCEEEeCCCccCHHHHHHHHccCC--CCeEEEEEEEeCCC
Confidence 678888887775332211 123332222 3335677899999999999986532 33456888998877
Q ss_pred ccccHHHHHHHhc----C--CCCCEEEEEEcC
Q 020040 194 HGISLRTLIRKSA----D--LSGPCLLVVGDR 219 (332)
Q Consensus 194 hG~Sl~tf~~k~~----~--~~gPtLLlIkd~ 219 (332)
..-+++.-+.++. + ..|-.|||+.|.
T Consensus 156 g~~~L~~AL~~l~~eA~~AV~~G~~ilILSDr 187 (771)
T d1ea0a2 156 GPEALRDALRRIRQETEDAVRGGATHVILTDE 187 (771)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTCCEEEEECT
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 6566665444432 1 147788888775
No 2
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=12.55 E-value=39 Score=21.68 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHhhhcCCC
Q 020040 2 YSIKEKVTEKLSRLFADSP 20 (332)
Q Consensus 2 ~~~k~~~~~~~~~~~~~s~ 20 (332)
|.++|.|+.-|+|.|..|-
T Consensus 12 ygiredvalclarafdgsi 30 (57)
T d2csba2 12 YGIREDVALCLARAFDGSI 30 (57)
T ss_dssp HCCCHHHHHHHHHHTTTCH
T ss_pred hccHHHHHHHHHHHhCCce
Confidence 3567899999999999884
No 3
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.50 E-value=95 Score=21.13 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHhhhcCC
Q 020040 3 SIKEKVTEKLSRLFADS 19 (332)
Q Consensus 3 ~~k~~~~~~~~~~~~~s 19 (332)
-+|+|++++|.+-+.|-
T Consensus 13 e~kkkL~e~lr~k~P~a 29 (69)
T d1kxpd3 13 EYKKKLAERLKAKLPDA 29 (69)
T ss_dssp HHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 47999999999988764
No 4
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}
Probab=6.99 E-value=1.9e+02 Score=28.36 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=52.7
Q ss_pred ccCCCCcccccCCCCCCC------CchhhhhcCCCCCCccCCCCCCCCCCCCHHHHHHHHHcCCccccCCcceEEEeecc
Q 020040 120 VSVDDDDKDCACGSTSSD------SDAYAEATDLPSPTKLLSNVREDSVFITSELYEFLQSSIPNLVKGCQWVLLYSTLK 193 (332)
Q Consensus 120 ~~~~~~~~~~~~~r~~~~------~~~~~e~~~~~~~~~~lP~L~~~S~ILt~~~~~~L~~~LP~~~~~~~w~LLYsSs~ 193 (332)
|-||++|.+-+.---+.. .+.++|..+ +-..|.-.|.||+...+..|.. ..++......+|....
T Consensus 72 VTNPPID~iRE~~VmSl~~~lG~~~Nil~~~~~------~~~~l~l~sPiLs~~el~~i~~---~~~~~~~i~~~f~~~g 142 (809)
T d1ofda2 72 VTNPPIDPLRENLVMSLAMFLGKRGNLLEPKAE------SARTIKLRSPLVNEVELQAIKT---GQLQVAEVSTLYDLDG 142 (809)
T ss_dssp SSSCCCCTTTTGGGCBCCEEESCCCCSSSCCGG------GGCEEEESCSBCCHHHHHHHHH---SSSCEEEEECEEECSS
T ss_pred CCCCCccHHHhhccccccceecCCCCCCCCCCC------CCCeEEECCCccCHHHHHHHHc---CCCceEEEeEEecCCc
Confidence 678888877665221111 122222222 3445667788999999999864 2344467788887641
Q ss_pred ccccHHH----HHHHhcC--CCCCEEEEEEcCC
Q 020040 194 HGISLRT----LIRKSAD--LSGPCLLVVGDRQ 220 (332)
Q Consensus 194 hG~Sl~t----f~~k~~~--~~gPtLLlIkd~~ 220 (332)
..+|.. +.+.+.. ..|-.|||+.|.+
T Consensus 143 -~~~L~~aL~~l~~ea~~AV~~G~~ilILSDR~ 174 (809)
T d1ofda2 143 -VNSLEDALTNLVKTAIATVQAGAEILVLTDRP 174 (809)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHTTCSEEEEESSG
T ss_pred -hHHHHHHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence 234444 3333221 1478888888864
No 5
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=6.76 E-value=2.8e+02 Score=24.73 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=38.1
Q ss_pred HHcCCccccCCcceEEEeeccccccHHHHHHHhcC-CCCCEEEEEEcCCCcEEeeccC-CCCccCCCCCccCCCC
Q 020040 173 QSSIPNLVKGCQWVLLYSTLKHGISLRTLIRKSAD-LSGPCLLVVGDRQGAVFGGLLE-CPLKPTPKRKYQGTNQ 245 (332)
Q Consensus 173 ~~~LP~~~~~~~w~LLYsSs~hG~Sl~tf~~k~~~-~~gPtLLlIkd~~g~VFGay~s-~~w~~s~~~~y~G~~e 245 (332)
...+|+. |.-.-.....=.+|-.+++.+.+ ++||..|+..| |...||.++ ..+|+ ..|+-+.+
T Consensus 296 ~mliP~a-----w~~~~~m~~~~r~fyey~~~~~epwdGPA~i~ftd--g~~~ga~lDRnGLRP---~ry~~t~d 360 (422)
T d1ea0a3 296 MMLVPQA-----LTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTD--GRWVVGGMDRNGLRP---MRYTITTD 360 (422)
T ss_dssp HHHSCCC-----CC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECS--SSEEEEECCTTCCSC---CEEEEETT
T ss_pred Hhhchhh-----hhccccccHHHHHHHHHHHhhccccCCCeEEEEec--CCEEEEEecCCCCCc---ceEEEecC
Confidence 4556664 44433444444566677776655 78999999855 667788776 56776 34554443
No 6
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=4.84 E-value=93 Score=19.28 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.6
Q ss_pred CCCCCCccccccccccccccc
Q 020040 56 SDGSKTSQQHRELKKLRSIPC 76 (332)
Q Consensus 56 ~~~~~~~~~~~~~~~~~s~~~ 76 (332)
.-|++++++++.=|||.-+..
T Consensus 15 IRGHRsS~C~H~dRpL~~v~~ 35 (42)
T d1co4a_ 15 IKSHKAAQCEHNDRPLKILKP 35 (42)
T ss_dssp TTTSGGGGCCCCSSCEEEECS
T ss_pred hCcccccccccCCcccEeecC
Confidence 468999999999999865443
No 7
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.72 E-value=1.6e+02 Score=18.73 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHcCCccccCCcceEEEeeccccccHHHHHHHhcCC
Q 020040 164 ITSELYEFLQSSIPNLVKGCQWVLLYSTLKHGISLRTLIRKSADL 208 (332)
Q Consensus 164 Lt~~~~~~L~~~LP~~~~~~~w~LLYsSs~hG~Sl~tf~~k~~~~ 208 (332)
|..-....|...|- .+.|+.-=.+..=|.|-.|||+++..+
T Consensus 17 l~~~Er~~I~~aL~----~~~gn~~~aA~~LGIsR~TL~rkmkky 57 (60)
T d1umqa_ 17 ADRVRWEHIQRIYE----MCDRNVSETARRLNMHRRTLQRILAKR 57 (60)
T ss_dssp HHHHHHHHHHHHHH----HTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH----HhcCcHHHHHHHHCCCHHHHHHHHHHc
Confidence 33334444444432 234554444455599999999999886
No 8
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]}
Probab=4.25 E-value=2.2e+02 Score=20.51 Aligned_cols=13 Identities=31% Similarity=0.156 Sum_probs=10.1
Q ss_pred CCceEeEEEEEee
Q 020040 312 EDFELKNVELWGF 324 (332)
Q Consensus 312 ~~F~I~~IEVWg~ 324 (332)
..+.|-+||||+=
T Consensus 141 ~~lsl~EveVY~~ 153 (158)
T d1k12a_ 141 ESLHLCEVEVNVD 153 (158)
T ss_dssp SCCCEEEEEEEEE
T ss_pred ceEEEEEEEEecC
Confidence 4467999999974
No 9
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=4.16 E-value=1.8e+02 Score=19.71 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHhhh
Q 020040 3 SIKEKVTEKLSRLF 16 (332)
Q Consensus 3 ~~k~~~~~~~~~~~ 16 (332)
|+|+.|.+||++|-
T Consensus 16 al~~~ve~kl~kL~ 29 (95)
T d2ywqa1 16 AIRDYVEKKLARLD 29 (95)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777777763
No 10
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Probab=4.09 E-value=2.7e+02 Score=24.92 Aligned_cols=48 Identities=29% Similarity=0.517 Sum_probs=29.7
Q ss_pred HHHHHHHhcC-CCCCEEEEEEcCCCcEEeeccC-CCCccCCCCCccCCCCe-EEEE
Q 020040 198 LRTLIRKSAD-LSGPCLLVVGDRQGAVFGGLLE-CPLKPTPKRKYQGTNQT-FVFT 250 (332)
Q Consensus 198 l~tf~~k~~~-~~gPtLLlIkd~~g~VFGay~s-~~w~~s~~~~y~G~~es-FLFs 250 (332)
|-.+|+.+.+ ++||..|++.| |...||.++ ..+|+ ..|+.+.+- +++.
T Consensus 315 fyey~~~~mEpWDGPA~i~ftd--G~~iga~lDRnGLRP---~Ry~~t~d~~~i~a 365 (430)
T d1ofda3 315 FHDYYSGLQEPWDGPALLVFSD--GKIVGAGLDRNGLRP---ARYCITKDDYIVLG 365 (430)
T ss_dssp HHHHHTTTCCCCCSSEEEEEEC--SSEEEEEECTTCCSC---CEEEEETTCCEEEE
T ss_pred HHHHHHhhhhcccCCEEEEEec--CCEEEEEecCCCCCc---ceEEEecCCEEEEE
Confidence 3333333333 68999999865 567777776 57777 457666554 4444
Done!