Query 020041
Match_columns 332
No_of_seqs 146 out of 276
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1022 Acetylglucosaminyltran 100.0 2.4E-89 5.1E-94 679.3 18.8 299 6-330 376-691 (691)
2 PF09258 Glyco_transf_64: Glyc 100.0 1.5E-85 3.3E-90 615.2 18.6 236 73-326 1-244 (247)
3 KOG2264 Exostosin EXT1L [Signa 100.0 3E-75 6.4E-80 580.9 14.0 242 67-326 645-889 (907)
4 PF00535 Glycos_transf_2: Glyc 97.3 0.00055 1.2E-08 56.5 5.8 114 74-196 1-117 (169)
5 PRK11204 N-glycosyltransferase 96.6 0.038 8.3E-07 54.8 13.3 117 70-196 53-174 (420)
6 cd04184 GT2_RfbC_Mx_like Myxoc 96.6 0.017 3.7E-07 50.3 9.3 116 72-195 2-121 (202)
7 TIGR03469 HonB hopene-associat 96.5 0.089 1.9E-06 52.2 14.9 120 69-197 38-173 (384)
8 cd02526 GT2_RfbF_like RfbF is 96.2 0.1 2.3E-06 46.6 12.7 175 75-271 1-190 (237)
9 cd02525 Succinoglycan_BP_ExoA 96.1 0.056 1.2E-06 48.3 10.3 113 72-193 1-117 (249)
10 cd06421 CESA_CelA_like CESA_Ce 96.0 0.057 1.2E-06 48.0 9.7 178 72-270 2-196 (234)
11 cd06423 CESA_like CESA_like is 95.9 0.038 8.3E-07 45.2 7.6 115 75-198 1-118 (180)
12 cd06439 CESA_like_1 CESA_like_ 95.8 0.07 1.5E-06 48.4 9.4 104 70-184 28-136 (251)
13 cd04196 GT_2_like_d Subfamily 95.7 0.24 5.2E-06 43.1 12.2 112 74-193 1-116 (214)
14 cd06913 beta3GnTL1_like Beta 1 95.6 0.14 3.1E-06 45.6 10.7 111 75-192 1-119 (219)
15 cd02511 Beta4Glucosyltransfera 95.5 0.07 1.5E-06 48.6 8.5 100 72-187 1-101 (229)
16 PF13641 Glyco_tranf_2_3: Glyc 95.4 0.025 5.4E-07 50.4 4.9 175 73-269 3-194 (228)
17 cd02510 pp-GalNAc-T pp-GalNAc- 95.3 0.068 1.5E-06 50.6 8.1 111 74-191 1-117 (299)
18 cd06434 GT2_HAS Hyaluronan syn 95.2 0.073 1.6E-06 47.5 7.5 111 73-196 2-114 (235)
19 cd04185 GT_2_like_b Subfamily 95.2 0.13 2.8E-06 45.0 8.9 153 75-270 1-159 (202)
20 cd06427 CESA_like_2 CESA_like_ 95.2 0.18 3.8E-06 46.0 10.0 115 72-197 2-124 (241)
21 cd02520 Glucosylceramide_synth 95.1 0.5 1.1E-05 41.6 12.5 153 72-270 2-162 (196)
22 cd04186 GT_2_like_c Subfamily 94.9 0.21 4.5E-06 41.3 9.0 102 75-188 1-105 (166)
23 cd04192 GT_2_like_e Subfamily 94.9 0.17 3.7E-06 44.6 8.9 108 75-193 1-118 (229)
24 cd06433 GT_2_WfgS_like WfgS an 94.7 0.94 2E-05 38.6 12.8 101 74-187 1-105 (202)
25 cd04195 GT2_AmsE_like GT2_AmsE 94.7 0.3 6.4E-06 42.5 9.7 109 74-191 1-115 (201)
26 cd06437 CESA_CaSu_A2 Cellulose 94.6 0.22 4.8E-06 44.8 8.9 108 72-187 2-116 (232)
27 TIGR03472 HpnI hopanoid biosyn 94.5 0.59 1.3E-05 46.1 12.5 117 70-195 40-164 (373)
28 TIGR01556 rhamnosyltran L-rham 94.3 0.58 1.3E-05 43.7 11.3 169 79-269 2-185 (281)
29 cd04179 DPM_DPG-synthase_like 94.2 0.19 4.2E-06 42.8 7.3 109 75-193 1-116 (185)
30 cd00761 Glyco_tranf_GTA_type G 93.8 0.6 1.3E-05 37.0 9.0 104 75-187 1-107 (156)
31 cd02522 GT_2_like_a GT_2_like_ 93.7 0.41 8.9E-06 42.2 8.6 106 73-193 1-107 (221)
32 PRK10714 undecaprenyl phosphat 93.6 0.35 7.5E-06 47.2 8.7 114 70-192 5-124 (325)
33 cd06442 DPM1_like DPM1_like re 93.6 0.42 9.2E-06 42.2 8.6 108 75-191 1-113 (224)
34 cd04187 DPM1_like_bac Bacteria 92.3 0.85 1.8E-05 39.2 8.3 109 75-192 1-115 (181)
35 TIGR03111 glyc2_xrt_Gpos1 puta 92.2 3.1 6.7E-05 42.2 13.4 108 70-187 48-161 (439)
36 cd06420 GT2_Chondriotin_Pol_N 92.1 0.83 1.8E-05 38.9 8.0 100 75-182 1-104 (182)
37 PRK14583 hmsR N-glycosyltransf 92.0 4.6 0.0001 40.8 14.6 112 71-196 75-195 (444)
38 cd06435 CESA_NdvC_like NdvC_li 91.7 1.5 3.3E-05 39.1 9.6 110 74-191 1-118 (236)
39 KOG1021 Acetylglucosaminyltran 90.7 0.05 1.1E-06 55.9 -1.2 130 147-301 331-462 (464)
40 PRK10073 putative glycosyl tra 90.4 2.8 6E-05 40.9 10.7 114 71-194 6-122 (328)
41 PLN02726 dolichyl-phosphate be 88.8 4.6 9.9E-05 36.8 10.4 112 70-191 8-128 (243)
42 cd06438 EpsO_like EpsO protein 88.5 1.9 4.1E-05 37.4 7.2 106 75-192 1-116 (183)
43 PRK10018 putative glycosyl tra 88.1 3.2 6.9E-05 39.7 9.1 106 72-187 6-115 (279)
44 TIGR03030 CelA cellulose synth 86.6 10 0.00022 41.1 12.9 103 71-187 131-258 (713)
45 cd02514 GT13_GLCNAC-TI GT13_GL 86.1 2.1 4.5E-05 42.5 6.7 101 74-186 3-129 (334)
46 cd04188 DPG_synthase DPG_synth 85.2 2.5 5.3E-05 37.4 6.2 179 75-271 1-194 (211)
47 COG1216 Predicted glycosyltran 84.3 9.1 0.0002 36.5 10.1 108 71-189 3-116 (305)
48 PTZ00260 dolichyl-phosphate be 82.8 38 0.00082 33.1 13.9 109 68-184 67-189 (333)
49 PF10111 Glyco_tranf_2_2: Glyc 78.8 9.7 0.00021 36.0 8.1 111 74-194 1-128 (281)
50 COG0463 WcaA Glycosyltransfera 77.6 16 0.00036 29.1 8.0 103 70-183 2-108 (291)
51 PRK11498 bcsA cellulose syntha 76.6 48 0.001 37.1 13.6 100 71-187 260-369 (852)
52 COG1215 Glycosyltransferases, 74.9 49 0.0011 32.4 12.1 107 70-188 53-168 (439)
53 PRK13915 putative glucosyl-3-p 73.8 13 0.00028 36.0 7.5 119 69-196 29-157 (306)
54 PRK10063 putative glycosyl tra 62.9 47 0.001 30.8 8.7 95 72-177 2-102 (248)
55 PF05060 MGAT2: N-acetylglucos 53.1 21 0.00045 35.9 4.7 42 69-110 29-70 (356)
56 PF07172 GRP: Glycine rich pro 49.3 15 0.00032 30.0 2.5 19 28-46 1-19 (95)
57 COG4698 Uncharacterized protei 46.7 65 0.0014 29.6 6.3 138 32-193 11-156 (197)
58 cd06436 GlcNAc-1-P_transferase 42.7 1E+02 0.0022 26.8 7.1 102 75-187 1-118 (191)
59 PRK05454 glucosyltransferase M 40.3 5.3E+02 0.012 28.3 15.4 115 67-187 120-250 (691)
60 PF13632 Glyco_trans_2_3: Glyc 39.3 37 0.00081 29.3 3.7 26 161-187 2-27 (193)
61 PF01762 Galactosyl_T: Galacto 38.3 58 0.0013 28.9 4.8 39 158-196 81-121 (195)
62 PF10731 Anophelin: Thrombin i 34.9 55 0.0012 24.8 3.3 31 28-60 1-31 (65)
63 cd04191 Glucan_BSP_ModH Glucan 34.7 3.5E+02 0.0075 25.4 9.7 109 74-187 2-125 (254)
64 KOG3738 Predicted polypeptide 34.1 2.9E+02 0.0063 28.8 9.3 106 74-191 126-238 (559)
65 cd04190 Chitin_synth_C C-termi 30.1 91 0.002 28.5 4.8 43 155-198 71-113 (244)
66 cd02518 GT2_SpsF SpsF is a gly 29.2 3.1E+02 0.0067 24.7 8.1 95 84-190 25-121 (233)
67 PF12652 CotJB: CotJB protein; 28.0 1E+02 0.0022 24.3 4.0 46 246-321 16-61 (78)
68 PF13506 Glyco_transf_21: Glyc 26.1 87 0.0019 27.7 3.8 109 150-270 23-139 (175)
69 PRK14716 bacteriophage N4 adso 22.8 5E+02 0.011 27.3 9.2 99 68-177 63-178 (504)
70 KOG3121 Dynactin, subunit p25 20.7 19 0.00041 32.1 -1.5 35 163-197 127-161 (184)
71 PF03071 GNT-I: GNT-I family; 20.5 50 0.0011 34.1 1.3 105 68-177 90-211 (434)
72 PRK15039 transcriptional repre 20.0 1E+02 0.0022 24.9 2.7 24 246-269 23-46 (90)
No 1
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=2.4e-89 Score=679.33 Aligned_cols=299 Identities=40% Similarity=0.670 Sum_probs=261.8
Q ss_pred ccccccchhHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhhcCCCCCCC----------CCCCCCCCCCCCCCeeE
Q 020041 6 SLLFNNNRRTAQRFRQLAISAVGSSKIKLLLCFCIAFTVLLLLSRGSTLTEWT----------DSGPLDRSSSPGKGYAI 75 (332)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~----------~~~~~~~~~~~~~~FTv 75 (332)
+.+. .||++||++++ .-...+.|++.+|+...++ -..+.+.+.|| ++...++++++.++||+
T Consensus 376 ~sl~--~r~~~~rl~rf----~~~~~~~l~~~~~i~~~ll--p~v~~s~~~w~~~~~~~~s~s~~~~~~~ik~~~qgFTl 447 (691)
T KOG1022|consen 376 CSLQ--LRRIGSRLNRF----PPFKRGFLLLLSSIGKRLL--PVVAISSRLWNVGVRYIYSGSNPLFLPPIKGHSQGFTL 447 (691)
T ss_pred hhhh--hhhhhhhHhhc----chHHHHHHHHHHHHhhhhh--heeeeccccccccceecccCCCccccCCCCCcccceee
Confidence 4445 78999998887 3344456666666665544 44556777888 24567899999999999
Q ss_pred EEEeecCcHHHHHHHHHHccCCCccEEEEEeCCC--CCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcccccccccc
Q 020041 76 LMNTWKRYDLLKQSIAHYAKCPGLDSIHLVWSEP--DPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLNNRFKEI 153 (332)
Q Consensus 76 vi~ty~R~~~L~~~l~~~~~~p~l~~IvVVWn~~--~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLnnRF~P~ 153 (332)
+|+||+|.++|+++|+||++||+|+||+|||||. +||+++++ +..+|||+|+++++|+|||||.|+
T Consensus 448 im~TYdR~d~L~k~v~~ys~vPsL~kIlVVWNnq~k~PP~es~~------------~~~~VPlr~r~qkeNsLnNRF~~~ 515 (691)
T KOG1022|consen 448 IMLTYDRVDLLKKLVKHYSRVPSLKKILVVWNNQGKNPPPESLE------------PDIAVPLRFRQQKENSLNNRFEPY 515 (691)
T ss_pred eeehHHHHHHHHHHHHHHhhCCCcceEEEEecCCCCCCChhhcc------------ccCCccEEEEehhhhhhhcccccC
Confidence 9999999999999999999999999999999994 45554432 233699999999999999999999
Q ss_pred CCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceeccccCccccceecceEeee
Q 020041 154 KDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSKASFFH 233 (332)
Q Consensus 154 ~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YSmVLT~aAF~H 233 (332)
++|||+|||++||||+++|+||+|||+|||+||||||||+||.|+|+.+. ..|.|.+ .|+++||||||||||+|
T Consensus 516 peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVGF~pR~H~~t~s~--~k~~y~s----ewt~qySMVLtGAAFfh 589 (691)
T KOG1022|consen 516 PEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVGFVPRFHVWTMSY--SKWKYES----EWTNQYSMVLTGAAFFH 589 (691)
T ss_pred cccccceeEEecCceeeecchhHHHHHHHHhCccceeccCcceeeccccc--chhhhee----ecCCceEEEEechhHHH
Confidence 99999999999999999999999999999999999999999999998754 5688865 37899999999999999
Q ss_pred hhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhhCCCCeEEece-----ecccccccCCCCCCchHHHHHHHHHHH
Q 020041 234 KKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWVKGK-----IYEIGSTGISTLGGHSEKRTQCLNRFA 308 (332)
Q Consensus 234 r~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~k-----~~~~~~~giS~~~~H~~~Rs~Cln~F~ 308 (332)
++|+++||+.||+.+|++||+++||||||||||+||+||+|+|||+++ ....|.+|+|.+.+|+.+|++|||+|+
T Consensus 590 k~y~~lYt~~mPa~ir~~vDe~~NCEDIAMNFLiANatg~~aI~Vkp~~~~~~~~~sg~~gls~~~~H~~kRS~CInrFv 669 (691)
T KOG1022|consen 590 KKYLDLYTSDMPADIRVFVDEHMNCEDIAMNFLIANATGKPAIKVKPRKKFKCPECSGVAGLSNDNQHMRKRSKCINRFV 669 (691)
T ss_pred HHHHHHhhhcccchHHHhhhcccCHHHHHHHHHhhhccCCCceEEeCcccccCcccccceeeccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 234578999999999999999999999
Q ss_pred HHhCCCCCCCeeeEEEeccccc
Q 020041 309 AEFGRMPLVPTSMKAVDSRRMW 330 (332)
Q Consensus 309 ~~fG~mPLv~S~~r~v~~~~~~ 330 (332)
++||.|||+++++|+.++.-.|
T Consensus 670 ~iyGsMPLr~~e~~a~~~~~~~ 691 (691)
T KOG1022|consen 670 DIYGSMPLRYVEFRADPVGFDD 691 (691)
T ss_pred HHhcCCceeEEEeeeccccCCC
Confidence 9999999999999999876543
No 2
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=100.00 E-value=1.5e-85 Score=615.25 Aligned_cols=236 Identities=44% Similarity=0.836 Sum_probs=186.9
Q ss_pred eeEEEEe-ecCcHHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcccccccc
Q 020041 73 YAILMNT-WKRYDLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLNNRFK 151 (332)
Q Consensus 73 FTvvi~t-y~R~~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLnnRF~ 151 (332)
|||+|+| |+|.+.|+++|+||++||+|+||+|||||+++||+.. .+ +..++||+++.+++|||||||+
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~-~~----------~~~~vpV~~~~~~~nsLnnRF~ 69 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSS-KW----------PSTGVPVRVVRSSRNSLNNRFL 69 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHH-HH----------T---S-EEEEEESSHHGGGGGS
T ss_pred CEEEEEecccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCccc-cc----------CCCCceEEEEecCCccHHhcCc
Confidence 8999999 9999999999999999999999999999988777542 11 2335899999999999999999
Q ss_pred ccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceeccccCccccceecceEe
Q 020041 152 EIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSKASF 231 (332)
Q Consensus 152 P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YSmVLT~aAF 231 (332)
|+++|+|||||++|||+.++++||||||++||+||||||||+||+|.|++. ++.|.|++ +|+++||||||||||
T Consensus 70 p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~--~~~~~Y~~----~~~~~ySmvLt~aaf 143 (247)
T PF09258_consen 70 PDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPS--SGRWKYTS----EWSNEYSMVLTGAAF 143 (247)
T ss_dssp --TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-E--TTEEEEE-----SSS--BSEE-TTEEE
T ss_pred CccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCC--cccccccc----CCCCcchhhhhhhHh
Confidence 999999999999999999999999999999999999999999999999874 46899976 579999999999999
Q ss_pred eehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhhCCCCeEEeceec-c------cccccCCCCCCchHHHHHHH
Q 020041 232 FHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWVKGKIY-E------IGSTGISTLGGHSEKRTQCL 304 (332)
Q Consensus 232 ~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~k~~-~------~~~~giS~~~~H~~~Rs~Cl 304 (332)
+||+||++|++.+|+++|+|||+++||||||||||||++||+|||+|+++.. . .+..|||++++|+++|++||
T Consensus 144 ~h~~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~~T~~pPi~v~~~~~~~~~~~~~~~~~gls~~~~H~~~R~~Cl 223 (247)
T PF09258_consen 144 YHRYYLELYTHWLPASIREYVDEHFNCEDIAMNFLVSNLTGKPPIKVTSRKKFKCSKCSGGGSSGLSSRPGHFKQRSKCL 223 (247)
T ss_dssp EETHHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHHHHHSS-SE--SSEEE-TTSSSS------CCCSTCHHHHHHHHH
T ss_pred hcchHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCcccccceeeccccccccccCCCCCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986432 1 23569999999999999999
Q ss_pred HHHHHHhCCCCCCCeeeEEEec
Q 020041 305 NRFAAEFGRMPLVPTSMKAVDS 326 (332)
Q Consensus 305 n~F~~~fG~mPLv~S~~r~v~~ 326 (332)
|+|+++||+|||++|++|+ |.
T Consensus 224 n~f~~~fG~mPL~~s~~r~-d~ 244 (247)
T PF09258_consen 224 NRFAEIFGYMPLVYSQFRA-DP 244 (247)
T ss_dssp HHHHHHTTS-----B-EEE-EE
T ss_pred HHHHHHHCCCCceeEeEEe-cC
Confidence 9999999999999999997 54
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=100.00 E-value=3e-75 Score=580.94 Aligned_cols=242 Identities=36% Similarity=0.603 Sum_probs=226.4
Q ss_pred CCCCCCeeEEEEeecCcHHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCccc
Q 020041 67 SSPGKGYAILMNTWKRYDLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSL 146 (332)
Q Consensus 67 ~~~~~~FTvvi~ty~R~~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsL 146 (332)
..|.+||||||.||+|...|...+..+...|+++||+||||++++|++++. ++.-+|||.+++.++|||
T Consensus 645 N~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~-----------WPdigvPv~viR~~~NsL 713 (907)
T KOG2264|consen 645 NRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLT-----------WPDIGVPVEVIRVAENSL 713 (907)
T ss_pred CCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhccc-----------CcCCCCceEEEEcccccc
Confidence 356899999999999999999999999999999999999999999987662 345589999999999999
Q ss_pred cccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceeccccCcccccee
Q 020041 147 NNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVL 226 (332)
Q Consensus 147 nnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YSmVL 226 (332)
||||.|++.|+|+||||+|||+.+..|||-|||+|||+++||||||++|.|.||.+. ++|-|.+ +.+++.||||
T Consensus 714 NNRFlPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVGFPgRyHAwd~p~--~sw~YNS----NysCelSMvL 787 (907)
T KOG2264|consen 714 NNRFLPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVGFPGRYHAWDGPH--DSWFYNS----NYSCELSMVL 787 (907)
T ss_pred cccccCchhhhheeeeecccchhhhhhheeeeeehhhhcccccccCCcccccccCCC--cceeecC----CcceEEeeee
Confidence 999999999999999999999999999999999999999999999999999999865 5699976 5689999999
Q ss_pred cceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhhCCCCeEEeceecc-cc--cccCCCCCCchHHHHHH
Q 020041 227 SKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWVKGKIYE-IG--STGISTLGGHSEKRTQC 303 (332)
Q Consensus 227 T~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~k~~~-~~--~~giS~~~~H~~~Rs~C 303 (332)
|||||+||||+++||.+||++||++||+.+|||||||||||||+|+||||||+++++. |. ..++|.+..||.+|.+|
T Consensus 788 TGAAF~HKyYlylYtY~mPqaIRd~Vdey~NCEDIAMNfLVSHiTRKPPiKvTSRWTfrCPgCp~sLs~ddtHF~eRHkC 867 (907)
T KOG2264|consen 788 TGAAFIHKYYLYLYTYEMPQAIRDHVDEYKNCEDIAMNFLVSHITRKPPIKVTSRWTFRCPGCPESLSKDDTHFEERHKC 867 (907)
T ss_pred hhhHHHHHHHHHhhhhhchHHHHHHHHhhcCHHHHHHHHHHHHhccCCCceeeceeEEeCCCCchhhccCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764 32 46799999999999999
Q ss_pred HHHHHHHhCCCCCCCeeeEEEec
Q 020041 304 LNRFAAEFGRMPLVPTSMKAVDS 326 (332)
Q Consensus 304 ln~F~~~fG~mPLv~S~~r~v~~ 326 (332)
||.|++.||||||.+||+| +||
T Consensus 868 infF~kvyGY~PLl~tQfR-aDS 889 (907)
T KOG2264|consen 868 INFFTKVYGYNPLLFTQFR-ADS 889 (907)
T ss_pred HHHHHHHhccChhhhhhhh-hhh
Confidence 9999999999999999999 566
No 4
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.28 E-value=0.00055 Score=56.51 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=77.2
Q ss_pred eEEEEeecCcHHHHHHHHHHccC-CCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc--ccccc
Q 020041 74 AILMNTWKRYDLLKQSIAHYAKC-PGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS--LNNRF 150 (332)
Q Consensus 74 Tvvi~ty~R~~~L~~~l~~~~~~-p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--LnnRF 150 (332)
||||.||++.+.|.++|..+.+. ..-.+|+||-|+..+-.. +.+..... ...++++...++|. -.++-
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~---~~~~~~~~------~~~~i~~i~~~~n~g~~~~~n 71 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETE---EILEEYAE------SDPNIRYIRNPENLGFSAARN 71 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHH---HHHHHHHC------CSTTEEEEEHCCCSHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccc---cccccccc------ccccccccccccccccccccc
Confidence 79999999999999999987554 667789999888732221 22222211 23456776666552 33444
Q ss_pred cccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCce
Q 020041 151 KEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRK 196 (332)
Q Consensus 151 ~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~ 196 (332)
.-....+++-|+.+|||..++.+-|+-..+.-.++|..+|+.....
T Consensus 72 ~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 117 (169)
T PF00535_consen 72 RGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIY 117 (169)
T ss_dssp HHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred ccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 4556789999999999999999999999999999877666555444
No 5
>PRK11204 N-glycosyltransferase; Provisional
Probab=96.60 E-value=0.038 Score=54.81 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=73.8
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchh-HHHHHHhhhccCCCCcceeEEEeecCCc--c
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSL-QIFLQHIIRKNSRNGRQVELKFDINTED--S 145 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l-~~~~~~~~~~~~~~~~~vpv~~~~~~~n--s 145 (332)
....||+|.+|+..+.+.+.++...+..+ -.||+||=++..+...+. .++..+ ...++++..++| .
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~----------~~~v~~i~~~~n~Gk 122 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQ----------IPRLRVIHLAENQGK 122 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHh----------CCcEEEEEcCCCCCH
Confidence 45799999999998889999988754433 348888876655433221 111110 012444442332 1
Q ss_pred ccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC-CeeecCCce
Q 020041 146 LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD-QMVGFVPRK 196 (332)
Q Consensus 146 LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd-RlVGf~~R~ 196 (332)
-.++=.-....++|-|+.+|+|..++++.|+...+..+++|+ -+|+-.++.
T Consensus 123 a~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~ 174 (420)
T PRK11204 123 ANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI 174 (420)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee
Confidence 111111223467899999999999999999999888888775 255555543
No 6
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.56 E-value=0.017 Score=50.29 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=73.0
Q ss_pred CeeEEEEeecCc-HHHHHHHHHHccCCCc-cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-cc-c
Q 020041 72 GYAILMNTWKRY-DLLKQSIAHYAKCPGL-DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-SL-N 147 (332)
Q Consensus 72 ~FTvvi~ty~R~-~~L~~~l~~~~~~p~l-~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-sL-n 147 (332)
++|++|.+|++. +.|.+.|+++.+...- -+|+||-++...+.. ..+...... .. ..+++...+.| .. .
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~--~~~~~~~~~----~~--~~~~~~~~~~~~g~~~ 73 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEV--KRVLKKYAA----QD--PRIKVVFREENGGISA 73 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHH--HHHHHHHHh----cC--CCEEEEEcccCCCHHH
Confidence 489999999999 9999999887554332 389999887654321 111111100 01 12344444433 11 1
Q ss_pred ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCc
Q 020041 148 NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPR 195 (332)
Q Consensus 148 nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R 195 (332)
++=.-....++|-|+.+|+|..+.++-|+.+.+...++|+.-+.+...
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 121 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDE 121 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccH
Confidence 111222356789999999999999999999999997777653333333
No 7
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=96.48 E-value=0.089 Score=52.20 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=75.4
Q ss_pred CCCCeeEEEEeecCcHHHHHHHHHHcc--CCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc-
Q 020041 69 PGKGYAILMNTWKRYDLLKQSIAHYAK--CPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS- 145 (332)
Q Consensus 69 ~~~~FTvvi~ty~R~~~L~~~l~~~~~--~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns- 145 (332)
...+.+|||.+|+..+.|.+.|+.+.+ .|.--||+||=++......+ ....... ..+.. ..++++..+.+.
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~---i~~~~~~-~~~~~--~~i~vi~~~~~~~ 111 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTAD---IARAAAR-AYGRG--DRLTVVSGQPLPP 111 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHH---HHHHHHH-hcCCC--CcEEEecCCCCCC
Confidence 345799999999998999999998744 44335888885444433222 1111110 11101 123433221110
Q ss_pred --------ccccccccCCCC-----CcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCcee
Q 020041 146 --------LNNRFKEIKDLK-----ADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKV 197 (332)
Q Consensus 146 --------LnnRF~P~~~i~-----T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h 197 (332)
+|.=. ...+ .|.|+.+|+|+.++++.|+...+..++.+..+|+..+|..
T Consensus 112 g~~Gk~~A~n~g~---~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~ 173 (384)
T TIGR03469 112 GWSGKLWAVSQGI---AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLR 173 (384)
T ss_pred CCcchHHHHHHHH---HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEeccccc
Confidence 12111 2233 8999999999999999999999988888878998887753
No 8
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=96.22 E-value=0.1 Score=46.58 Aligned_cols=175 Identities=15% Similarity=0.110 Sum_probs=92.5
Q ss_pred EEEEeecCc-HHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-----cccc
Q 020041 75 ILMNTWKRY-DLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-----SLNN 148 (332)
Q Consensus 75 vvi~ty~R~-~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-----sLnn 148 (332)
+||.+|++. +.|.+.|+.+..- ..+|+||=|+..+.... .. . . ...+++++..++| .+|.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~~~~---~~-----~-~---~~~~i~~i~~~~n~G~~~a~N~ 66 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ--VDKVVVVDNSSGNDIEL---RL-----R-L---NSEKIELIHLGENLGIAKALNI 66 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCccHHH---Hh-----h-c---cCCcEEEEECCCceehHHhhhH
Confidence 478899988 9999999997654 56898884443322111 10 0 1 1123455554443 1222
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHh---CCCCeeecCCceeeeecCCCCcceeecce-----ec-cccC
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRS---APDQMVGFVPRKVCVESKEGKDYYSYCGW-----WS-VWWT 219 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~---~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~-----~~-~~~~ 219 (332)
=+.-.....+|-|+.+|||+.++++.|+... .|.. ....+.++.|+....+.......+....+ .. ....
T Consensus 67 g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (237)
T cd02526 67 GIKAALENGADYVLLFDQDSVPPPDMVEKLL-AYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGL 145 (237)
T ss_pred HHHHHHhCCCCEEEEECCCCCcCHhHHHHHH-HHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCc
Confidence 2221122256999999999999999999987 4443 22344445554432111100000110000 00 0001
Q ss_pred ccccceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhh
Q 020041 220 GTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVT 271 (332)
Q Consensus 220 ~~YSmVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T 271 (332)
....-+.+.++++.|+.++..--. .+.. ...|||+-+..-+...-
T Consensus 146 ~~~~~~~~~~~~~rr~~~~~~ggf-d~~~------~~~~eD~d~~~r~~~~G 190 (237)
T cd02526 146 KEVDFLITSGSLISLEALEKVGGF-DEDL------FIDYVDTEWCLRARSKG 190 (237)
T ss_pred eEeeeeeccceEEcHHHHHHhCCC-CHHH------cCccchHHHHHHHHHcC
Confidence 123344556678888776654322 1111 24589999888887553
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=96.10 E-value=0.056 Score=48.28 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=69.8
Q ss_pred CeeEEEEeecCcHHHHHHHHHHcc--CC-CccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcccc-
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAK--CP-GLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLN- 147 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~--~p-~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLn- 147 (332)
++||+|.+|++.+.|.+.|+.+.+ .| .--+|+||=|+...... +.+.... .....++++..+.+...
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~---~~~~~~~------~~~~~v~~i~~~~~~~~~ 71 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTR---EIVQEYA------AKDPRIRLIDNPKRIQSA 71 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHH---HHHHHHH------hcCCeEEEEeCCCCCchH
Confidence 479999999999999999998843 33 34588888333332221 1211111 01123555544432221
Q ss_pred ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecC
Q 020041 148 NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFV 193 (332)
Q Consensus 148 nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~ 193 (332)
++=.-....++|-|+.+|||..++++.|+-..+.-++.+..+||..
T Consensus 72 a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 117 (249)
T cd02525 72 GLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGP 117 (249)
T ss_pred HHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecc
Confidence 1111223458999999999999999999988877766665666544
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.97 E-value=0.057 Score=47.97 Aligned_cols=178 Identities=9% Similarity=0.054 Sum_probs=98.0
Q ss_pred CeeEEEEeecCc-HHHHHHHHHHccCCCcc---EEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCccc-
Q 020041 72 GYAILMNTWKRY-DLLKQSIAHYAKCPGLD---SIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSL- 146 (332)
Q Consensus 72 ~FTvvi~ty~R~-~~L~~~l~~~~~~p~l~---~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsL- 146 (332)
+.+|+|.+|++. +.|.+.++.+.+...-. +|+|| .+.... ...+.+.... ... ++++...+.|..
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivv-dd~s~d--~t~~~~~~~~-----~~~--~~~~~~~~~~~~~ 71 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVL-DDGRRP--ELRALAAELG-----VEY--GYRYLTRPDNRHA 71 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEE-cCCCch--hHHHHHHHhh-----ccc--CceEEEeCCCCCC
Confidence 479999999975 67889999987666555 78887 333322 2223322211 101 233333333221
Q ss_pred --cccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC-eeecCCceeeeecCCC---Ccceeec--ce-eccc
Q 020041 147 --NNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ-MVGFVPRKVCVESKEG---KDYYSYC--GW-WSVW 217 (332)
Q Consensus 147 --nnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR-lVGf~~R~h~~~~~~~---~~~w~Y~--~~-~~~~ 217 (332)
.++=.-......|-|+.+|+|..++++.|+.....+.++|+- +|+...... +.... ...+.+. .. ....
T Consensus 72 ~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 149 (234)
T cd06421 72 KAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFY--NPDPFDWLADGAPNEQELFYGVIQ 149 (234)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEe--cCCcchhHHHHHHHHHHHHHHHHH
Confidence 111111234589999999999999999999999999887653 444322221 21110 0000000 00 0000
Q ss_pred c---CccccceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhh
Q 020041 218 W---TGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANV 270 (332)
Q Consensus 218 ~---~~~YSmVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~ 270 (332)
+ ....+.+.....+++|..++..-.. ++..-+||..+..-+...
T Consensus 150 ~~~~~~~~~~~~g~~~~~r~~~~~~ig~~---------~~~~~~eD~~l~~r~~~~ 196 (234)
T cd06421 150 PGRDRWGAAFCCGSGAVVRREALDEIGGF---------PTDSVTEDLATSLRLHAK 196 (234)
T ss_pred HHHhhcCCceecCceeeEeHHHHHHhCCC---------CccceeccHHHHHHHHHc
Confidence 0 0124555666888899877653211 244558999888765553
No 11
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=95.88 E-value=0.038 Score=45.19 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=71.6
Q ss_pred EEEEeecCcHHHHHHHHHHccCC-CccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc--ccccccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCP-GLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED--SLNNRFK 151 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p-~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n--sLnnRF~ 151 (332)
|+|.+|++.+.|.++|..+.+-. .--+|+||=++........ ..... ......+.+....+| .-.+|-.
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~---~~~~~-----~~~~~~~~~~~~~~~~g~~~~~n~ 72 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEI---LEELA-----ALYIRRVLVVRDKENGGKAGALNA 72 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHH---HHHHh-----ccccceEEEEEecccCCchHHHHH
Confidence 58899999999999999875432 3568999987765433211 11110 000112233333332 2333333
Q ss_pred ccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceee
Q 020041 152 EIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVC 198 (332)
Q Consensus 152 P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~ 198 (332)
-.....+|.|+.+|+|..+.++.|+-....+.+.|+ +.+..++...
T Consensus 73 ~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~-~~~v~~~~~~ 118 (180)
T cd06423 73 GLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPK-VGAVQGRVRV 118 (180)
T ss_pred HHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCC-eeeEeeeEEE
Confidence 445669999999999999999999877677777764 4555555543
No 12
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=95.76 E-value=0.07 Score=48.37 Aligned_cols=104 Identities=7% Similarity=0.051 Sum_probs=67.5
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHHccCCCc---cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc--
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHYAKCPGL---DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-- 144 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~~~~p~l---~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-- 144 (332)
...+||+|.+|++.+.|.+.|+++.+-... -||+|+=++......+ .+.... .. .++++..+.|
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~---~~~~~~-----~~---~v~~i~~~~~~g 96 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAE---IAREYA-----DK---GVKLLRFPERRG 96 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHH---HHHHHh-----hC---cEEEEEcCCCCC
Confidence 456999999999999999999887543322 4788885544433322 222110 11 2445444443
Q ss_pred cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHh
Q 020041 145 SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRS 184 (332)
Q Consensus 145 sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~ 184 (332)
.-.++-.-.....+|.|+.+|+|..++++.|+-....++.
T Consensus 97 ~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 97 KAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 2333333445677899999999999999889887777753
No 13
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.67 E-value=0.24 Score=43.10 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=68.7
Q ss_pred eEEEEeecCcHHHHHHHHHHccCC-CccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc--ccccc
Q 020041 74 AILMNTWKRYDLLKQSIAHYAKCP-GLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS--LNNRF 150 (332)
Q Consensus 74 Tvvi~ty~R~~~L~~~l~~~~~~p-~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--LnnRF 150 (332)
+|+|.||++.+.|.+.|..+.+.. .--||+||=++......+ .+.... ..++.++++...+.|. -.++-
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~---~~~~~~-----~~~~~~~~~~~~~~~~G~~~~~n 72 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVE---IIKEYI-----DKDPFIIILIRNGKNLGVARNFE 72 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHH---HHHHHH-----hcCCceEEEEeCCCCccHHHHHH
Confidence 689999999999999998875432 134788884433322222 111111 1112344555554431 22222
Q ss_pred cccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC-eeecC
Q 020041 151 KEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ-MVGFV 193 (332)
Q Consensus 151 ~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR-lVGf~ 193 (332)
.-....++|-|+.+|+|..+.++.|+-..+...+.|.- +++..
T Consensus 73 ~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 116 (214)
T cd04196 73 SLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSD 116 (214)
T ss_pred HHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecC
Confidence 23456789999999999999999999888876666543 44443
No 14
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=95.59 E-value=0.14 Score=45.61 Aligned_cols=111 Identities=8% Similarity=0.195 Sum_probs=67.0
Q ss_pred EEEEeecCcHHHHHHHHHHcc--CCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCC----c-ccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAK--CPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTE----D-SLN 147 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~--~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~----n-sLn 147 (332)
|+|.+|++.+.|.+.|..+.. .+.--||+|| ++..+.. ..+.+.....+ .. ..++++..... | .+.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVv-Dd~S~d~--t~~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~G~~ 73 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVF-NDASTDK--SAEIIEKWRKK-LE---DSGVIVLVGSHNSPSPKGVG 73 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEE-eCCCCcc--HHHHHHHHHHh-Cc---ccCeEEEEecccCCCCccHH
Confidence 589999999999999998743 2322488888 3332211 11222221110 11 11333332221 1 111
Q ss_pred -ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeec
Q 020041 148 -NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGF 192 (332)
Q Consensus 148 -nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf 192 (332)
.|-.-...-+.|-|+.+|+|..+.++.|+-.+..+.++|+.+||.
T Consensus 74 ~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 74 YAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 111223456789999999999999999998888888899988885
No 15
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=95.52 E-value=0.07 Score=48.59 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=66.5
Q ss_pred CeeEEEEeecCcHHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCC-ccccccc
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTE-DSLNNRF 150 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~-nsLnnRF 150 (332)
+.|++|.||+..+.|.+.|+++... ..+|+||=|+......+ .+.. .++ ++..... +--..|=
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~---i~~~---------~~~--~v~~~~~~g~~~~~n 64 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA--VDEIIVVDSGSTDRTVE---IAKE---------YGA--KVYQRWWDGFGAQRN 64 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHH---HHHH---------cCC--EEEECCCCChHHHHH
Confidence 4799999999988899999988654 35999987765433222 1110 122 2222221 1112222
Q ss_pred cccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 151 KEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 151 ~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
.-....++|-|+.+|.|..++++-++...+.-.+.|.
T Consensus 65 ~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 65 FALELATNDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred HHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 3344678899999999999999999987777777776
No 16
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.36 E-value=0.025 Score=50.44 Aligned_cols=175 Identities=10% Similarity=0.130 Sum_probs=81.6
Q ss_pred eeEEEEeecCcHHHHHHHHHHccCCCc-cEEEEEeCCCCCCC-chhHHHHHHhhhccCCCCcceeEEEeecCCcc-----
Q 020041 73 YAILMNTWKRYDLLKQSIAHYAKCPGL-DSIHLVWSEPDPPS-DSLQIFLQHIIRKNSRNGRQVELKFDINTEDS----- 145 (332)
Q Consensus 73 FTvvi~ty~R~~~L~~~l~~~~~~p~l-~~IvVVWn~~~~Pp-~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns----- 145 (332)
.||+|.+|++.+.|.+.|..+.+..+- -+|+|+=|+...+. +.+.++... . ....|+++..+.|.
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~-----~---~~~~v~vi~~~~~~g~~~k 74 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAAR-----Y---PRVRVRVIRRPRNPGPGGK 74 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHT-----T---GG-GEEEEE----HHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHH-----c---CCCceEEeecCCCCCcchH
Confidence 799999999999999999998765442 23444434443332 222222111 1 12345554443311
Q ss_pred ccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecc------ee--ccc
Q 020041 146 LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCG------WW--SVW 217 (332)
Q Consensus 146 LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~------~~--~~~ 217 (332)
-.++-.-....++|-|+.+|||+.++++-|+...+..+...-.+||...+. +.. +..+.+.. .. ...
T Consensus 75 ~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF13641_consen 75 ARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFP---DND--RNWLTRLQDLFFARWHLRFRS 149 (228)
T ss_dssp HHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEE---TTC--CCEEEE-TT--S-EETTTS-T
T ss_pred HHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEee---cCC--CCHHHHHHHHHHhhhhhhhhh
Confidence 122222333577999999999999999999998888833334566622221 211 11111110 00 001
Q ss_pred cCccccc--eecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHh
Q 020041 218 WTGTYSM--VLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVAN 269 (332)
Q Consensus 218 ~~~~YSm--VLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~ 269 (332)
....++. +...++++++.-++.--- -|+...+||.-+..-+..
T Consensus 150 ~~~~~~~~~~~G~~~~~rr~~~~~~g~---------fd~~~~~eD~~l~~r~~~ 194 (228)
T PF13641_consen 150 GRRALGVAFLSGSGMLFRRSALEEVGG---------FDPFILGEDFDLCLRLRA 194 (228)
T ss_dssp T-B----S-B--TEEEEEHHHHHHH-S-----------SSSSSHHHHHHHHHHH
T ss_pred hhcccceeeccCcEEEEEHHHHHHhCC---------CCCCCcccHHHHHHHHHH
Confidence 1222222 223566777765543321 244677899988877766
No 17
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=95.34 E-value=0.068 Score=50.56 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=73.2
Q ss_pred eEEEEeecCc-HHHHHHHHHHc-cCC-C-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc--cc
Q 020041 74 AILMNTWKRY-DLLKQSIAHYA-KCP-G-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS--LN 147 (332)
Q Consensus 74 Tvvi~ty~R~-~~L~~~l~~~~-~~p-~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--Ln 147 (332)
+|||.+|++. +.|.+.|..+. +.+ . ..|||||=|+...+.... +...... .....|+++..+.|. -.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~---~~~~~~~----~~~~~v~vi~~~~n~G~~~ 73 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKL---LLEEYYK----KYLPKVKVLRLKKREGLIR 73 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHH---HHHHHHh----hcCCcEEEEEcCCCCCHHH
Confidence 6899999988 99999999864 333 2 348998877665443221 1100000 111246666655542 11
Q ss_pred ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeee
Q 020041 148 NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVG 191 (332)
Q Consensus 148 nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVG 191 (332)
.|=.-...-+.|-|+.+|+|+.++++-|+-..+.-.++|..+||
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~ 117 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVC 117 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEE
Confidence 22222234678999999999999999999999988899988887
No 18
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.21 E-value=0.073 Score=47.54 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=68.6
Q ss_pred eeEEEEeecCc-HHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCC-ccccccc
Q 020041 73 YAILMNTWKRY-DLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTE-DSLNNRF 150 (332)
Q Consensus 73 FTvvi~ty~R~-~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~-nsLnnRF 150 (332)
.||||.||++. +.|.+.|+++.+.. -.+|+||=++...+..+. +.. .. ... .+++...+. ..-+++-
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~---l~~----~~-~~~--~~~v~~~~~~g~~~a~n 70 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSI---LSQ----TV-KYG--GIFVITVPHPGKRRALA 70 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHH---HHh----hc-cCC--cEEEEecCCCChHHHHH
Confidence 58999999988 89999999875543 458888855544332211 100 01 111 223332222 2222222
Q ss_pred cccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCce
Q 020041 151 KEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRK 196 (332)
Q Consensus 151 ~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~ 196 (332)
.-....++|-|+.+|||..++++.|+-...... +| .+.+..++.
T Consensus 71 ~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~-~v~~v~~~~ 114 (235)
T cd06434 71 EGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE-DP-KVGGVGTNQ 114 (235)
T ss_pred HHHHHhCCCEEEEECCCceeChhHHHHHHHhcc-CC-CEeEEcCce
Confidence 233456899999999999999999999988887 44 344444443
No 19
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.21 E-value=0.13 Score=45.04 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=87.4
Q ss_pred EEEEeecCcHHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-----cccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-----SLNN 148 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-----sLnn 148 (332)
|||.||++.+.|.+.|+.+.+... -.+|+|+ ++..... ..+..... .. ..++++...++| .+|.
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiiiv-D~~s~d~--t~~~~~~~-----~~--~~~i~~~~~~~n~g~~~~~n~ 70 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIVI-DNASTDG--TAEWLTSL-----GD--LDNIVYLRLPENLGGAGGFYE 70 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEEE-ECCCCcc--hHHHHHHh-----cC--CCceEEEECccccchhhHHHH
Confidence 589999999999999999865432 3466555 4433221 11222211 11 123555555544 2232
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceeccccCccccceecc
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSK 228 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YSmVLT~ 228 (332)
=+.--.....|.|+.+|||..++++-++-..+.+. .|. .....|+....+ + -..
T Consensus 71 ~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~-~~~~~~~~~~~~-----~-------------------~~~ 124 (202)
T cd04185 71 GVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDN-PQFLAPLVLDPD-----G-------------------SFV 124 (202)
T ss_pred HHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCC-ceEecceeEcCC-----C-------------------ceE
Confidence 22211145789999999999999999998888887 443 222333332111 0 123
Q ss_pred eEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhh
Q 020041 229 ASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANV 270 (332)
Q Consensus 229 aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~ 270 (332)
+.+++|+.+....-..+ .. ..=+||.-+...+...
T Consensus 125 ~~~~~~~~~~~~g~~~~-~~------~~~~eD~~~~~r~~~~ 159 (202)
T cd04185 125 GVLISRRVVEKIGLPDK-EF------FIWGDDTEYTLRASKA 159 (202)
T ss_pred EEEEeHHHHHHhCCCCh-hh------hccchHHHHHHHHHHc
Confidence 46788877665421111 10 2247999998887765
No 20
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=95.19 E-value=0.18 Score=45.98 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=70.5
Q ss_pred CeeEEEEeecCcHHHHHHHHHHccCCC---ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc----
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAKCPG---LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED---- 144 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~~p~---l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n---- 144 (332)
.+||+|.+|+..+.|.++|+.+.+..+ .-||+||=++... ...+.+... .......|.+.....|
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d---~t~~i~~~~-----~~~~~~~i~~~~~~~~~G~~ 73 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDE---ETIAAARAL-----RLPSIFRVVVVPPSQPRTKP 73 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCc---hHHHHHHHh-----ccCCCeeEEEecCCCCCchH
Confidence 589999999988889999998865432 2367777343321 111222211 1111223333222221
Q ss_pred -cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCcee
Q 020041 145 -SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKV 197 (332)
Q Consensus 145 -sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h 197 (332)
.+|. -....+.|-|+.+|+|..++++.|+-....+.+.+..++...++..
T Consensus 74 ~a~n~---g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 124 (241)
T cd06427 74 KACNY---ALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLN 124 (241)
T ss_pred HHHHH---HHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceE
Confidence 2222 2335688999999999999999999999999876555554445543
No 21
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.14 E-value=0.5 Score=41.58 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=86.8
Q ss_pred CeeEEEEeecCcHHHHHHHHHHcc--CCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-cc--
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAK--CPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-SL-- 146 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~--~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-sL-- 146 (332)
..||||.+|+....|.+.|+.+.+ .|. -||+||=++...... +.+..... .. + ...+++....++ ..
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~-~eiivVdd~s~d~t~---~~~~~~~~-~~-~--~~~~~~~~~~~~~g~~~ 73 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPK-YEILFCVQDEDDPAI---PVVRKLIA-KY-P--NVDARLLIGGEKVGINP 73 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCC-eEEEEEeCCCcchHH---HHHHHHHH-HC-C--CCcEEEEecCCcCCCCH
Confidence 379999999988788888888754 344 577777555542221 12111111 00 1 122344444333 21
Q ss_pred --cccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC-CeeecCCceeeeecCCCCcceeecceeccccCcccc
Q 020041 147 --NNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD-QMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYS 223 (332)
Q Consensus 147 --nnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd-RlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YS 223 (332)
+|.=.-....++|.|+.+|+|..++++-|+...+.- ..|+ .+||-.
T Consensus 74 ~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~~v~~~------------------------------ 122 (196)
T cd02520 74 KVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPL-MDPGVGLVTCL------------------------------ 122 (196)
T ss_pred hHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHh-hCCCCCeEEee------------------------------
Confidence 121112345679999999999999999998776653 3332 222211
Q ss_pred ceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhh
Q 020041 224 MVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANV 270 (332)
Q Consensus 224 mVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~ 270 (332)
++...++++.|+.++..--. .... ..-|||..+..-+...
T Consensus 123 ~~~g~~~~~r~~~~~~~ggf--~~~~-----~~~~eD~~l~~rl~~~ 162 (196)
T cd02520 123 CAFGKSMALRREVLDAIGGF--EAFA-----DYLAEDYFLGKLIWRL 162 (196)
T ss_pred cccCceeeeEHHHHHhccCh--HHHh-----HHHHHHHHHHHHHHHc
Confidence 23345678888877654321 1111 1238999988777544
No 22
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.94 E-value=0.21 Score=41.34 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=62.2
Q ss_pred EEEEeecCcHHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc--ccccccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED--SLNNRFK 151 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n--sLnnRF~ 151 (332)
|+|.+|+|.+.|.++++.+..... -.+|+|+=++...+..+ .+... . . .+++...+.| .-.+|-.
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~---~~~~~----~-~----~~~~~~~~~~~g~~~a~n~ 68 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVE---LLREL----F-P----EVRLIRNGENLGFGAGNNQ 68 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHH---HHHHh----C-C----CeEEEecCCCcChHHHhhH
Confidence 588999999999999999865432 34555544433332211 11110 0 0 1333333332 2233333
Q ss_pred ccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC
Q 020041 152 EIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ 188 (332)
Q Consensus 152 P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR 188 (332)
-.....++-|+.+|||..++++.++-..+.=.++|+-
T Consensus 69 ~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 105 (166)
T cd04186 69 GIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDV 105 (166)
T ss_pred HHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCc
Confidence 4455689999999999999999888777665666654
No 23
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.93 E-value=0.17 Score=44.58 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=65.1
Q ss_pred EEEEeecCcHHHHHHHHHHccCCC---ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCC--c-----
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCPG---LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTE--D----- 144 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p~---l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~--n----- 144 (332)
|+|.||++.+.|.+.|..+.+... ..+|+||-++......+.-.+. .... ...+++...+. +
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-----~~~~---~~~v~~~~~~~~~~~g~~~ 72 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFA-----AAKP---NFQLKILNNSRVSISGKKN 72 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHH-----HhCC---CcceEEeeccCcccchhHH
Confidence 589999999999999988744322 2589999877644332221110 0111 11233332221 1
Q ss_pred cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecC
Q 020041 145 SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFV 193 (332)
Q Consensus 145 sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~ 193 (332)
.+|. -.....+|-|+.+|+|..+.++-|+-..+.-.+.+.-+|...
T Consensus 73 a~n~---g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 73 ALTT---AIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred HHHH---HHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 1221 123467899999999999999999988776565554444433
No 24
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.74 E-value=0.94 Score=38.55 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=61.3
Q ss_pred eEEEEeecCcHHHHHHHHHHc--cCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc--cccc
Q 020041 74 AILMNTWKRYDLLKQSIAHYA--KCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS--LNNR 149 (332)
Q Consensus 74 Tvvi~ty~R~~~L~~~l~~~~--~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--LnnR 149 (332)
||+|.||++.+.|.+.|..+. ..+. -||+|| ++..++. ..+.+.... . . .+.+ ...+|. -.++
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~-~evivv-Dd~s~d~--~~~~~~~~~-----~--~-~~~~-~~~~~~g~~~a~ 67 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPN-IEYIVI-DGGSTDG--TVDIIKKYE-----D--K-ITYW-ISEPDKGIYDAM 67 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCC-ceEEEE-eCCCCcc--HHHHHHHhH-----h--h-cEEE-EecCCcCHHHHH
Confidence 689999999999999998874 3454 478888 3333221 112222110 0 0 1122 222221 1111
Q ss_pred ccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 150 FKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 150 F~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
=.-....++|-|+.+|||..+.++.++.......+.|+
T Consensus 68 n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~ 105 (202)
T cd06433 68 NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPE 105 (202)
T ss_pred HHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCC
Confidence 11223567899999999999999999888877877764
No 25
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.69 E-value=0.3 Score=42.48 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=69.2
Q ss_pred eEEEEeecCc--HHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc--ccc
Q 020041 74 AILMNTWKRY--DLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS--LNN 148 (332)
Q Consensus 74 Tvvi~ty~R~--~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--Lnn 148 (332)
||+|-||++. +.|.+.|.++..-.. -.+|+||=++.... ...+++.... . ..|+++...++|. -.+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d--~t~~~~~~~~-----~--~~~i~~i~~~~n~G~~~a 71 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQ--SLNEVLEEFK-----R--KLPLKVVPLEKNRGLGKA 71 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCch--hHHHHHHHHH-----h--cCCeEEEEcCccccHHHH
Confidence 6899999865 478899998754332 35777765554322 2222222221 1 1135555555442 223
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC-eee
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ-MVG 191 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR-lVG 191 (332)
|-.-...-.+|.|+.+|+|..++++.|+-.....+++|+- +||
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~ 115 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVG 115 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEc
Confidence 3333345679999999999999999999999999888753 444
No 26
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=94.60 E-value=0.22 Score=44.80 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=62.8
Q ss_pred CeeEEEEeecCcHHHHHHHHHHccCCC---ccEEEEEeCCCCCCC-chhHHHHHHhhhccCCCCcceeEEEeecCCc-c-
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAKCPG---LDSIHLVWSEPDPPS-DSLQIFLQHIIRKNSRNGRQVELKFDINTED-S- 145 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~~p~---l~~IvVVWn~~~~Pp-~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-s- 145 (332)
.+||||.+|+..+.|.+.|+.+.+..+ .-+|+|+ ++..... ..+.++.... . ...++++++...++ .
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVv-D~s~D~t~~~~~~~~~~~-----~-~~~~~i~~~~~~~~~G~ 74 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVL-DDSTDETVRLAREIVEEY-----A-AQGVNIKHVRRADRTGY 74 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEE-ECCCCcHHHHHHHHHHHH-----h-hcCCceEEEECCCCCCC
Confidence 489999999999999999999855433 3467776 3322221 1111221111 0 11345554443322 1
Q ss_pred -ccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 146 -LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 146 -LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
-.++=.-....+.|-|+.+|.|..++++-|+-... .-++|+
T Consensus 75 k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~-~~~~~~ 116 (232)
T cd06437 75 KAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPP-YFADPK 116 (232)
T ss_pred chHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhh-hhcCCC
Confidence 11111222356899999999999999999988433 334553
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.53 E-value=0.59 Score=46.13 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=69.7
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHHccC--CCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc---
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHYAKC--PGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED--- 144 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~~~~--p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n--- 144 (332)
....||+|-+|+..+.|.+.|+.+.+- |. -||+|+=++.+.+.. +...... +.. + .+.|+++..+++
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~-~EIivvdd~s~D~t~---~iv~~~~-~~~-p--~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYPG-FQMLFGVQDPDDPAL---AVVRRLR-ADF-P--DADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCCC-eEEEEEeCCCCCcHH---HHHHHHH-HhC-C--CCceEEEECCCCCCC
Confidence 446999999999888888988887543 44 577776333332221 1111111 111 1 223554544332
Q ss_pred --cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC-CeeecCCc
Q 020041 145 --SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD-QMVGFVPR 195 (332)
Q Consensus 145 --sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd-RlVGf~~R 195 (332)
+.+|-..-.+.-++|-|+.+|+|+.++++-|+......+ +|+ -+|+-.++
T Consensus 112 ~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~ 164 (373)
T TIGR03472 112 NRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYR 164 (373)
T ss_pred ChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEecccc
Confidence 122211124567899999999999999999998776664 554 46654443
No 28
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.27 E-value=0.58 Score=43.66 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=88.7
Q ss_pred eecC-cHHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-c----ccccccc
Q 020041 79 TWKR-YDLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-S----LNNRFKE 152 (332)
Q Consensus 79 ty~R-~~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-s----LnnRF~P 152 (332)
||+| .+.|.+.|+.+.+- ..+|+||=|+.... ........ .. ..|++...++| . +|.=..-
T Consensus 2 tyn~~~~~l~~~l~sl~~q--~~~iiVVDN~S~~~-~~~~~~~~--------~~--~~i~~i~~~~N~G~a~a~N~Gi~~ 68 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQ--VDRIIAVDNSPHSD-QPLKNARL--------RG--QKIALIHLGDNQGIAGAQNQGLDA 68 (281)
T ss_pred ccCccHHHHHHHHHHHHhc--CCEEEEEECcCCCc-HhHHHHhc--------cC--CCeEEEECCCCcchHHHHHHHHHH
Confidence 7998 57899999887654 34666665553322 22221111 11 12455555554 1 2211111
Q ss_pred cCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCC--cceeecce-----ecccc--Ccccc
Q 020041 153 IKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGK--DYYSYCGW-----WSVWW--TGTYS 223 (332)
Q Consensus 153 ~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~--~~w~Y~~~-----~~~~~--~~~YS 223 (332)
-.+-.+|.|+.+|||..++.+.|+...+.+.+.|..+...-|+.- +..++. +.....+. ..... ..+-+
T Consensus 69 a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (281)
T TIGR01556 69 SFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFF--DRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTS 146 (281)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEE--cCCCcccCCceeecccceeeecccccCCceecc
Confidence 111268999999999999999999999999887644444445532 211100 00000000 00000 11234
Q ss_pred ceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHh
Q 020041 224 MVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVAN 269 (332)
Q Consensus 224 mVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~ 269 (332)
.+++++++++++.++..-- +.+.. ...+||.-+.+=+..
T Consensus 147 ~~~~sg~li~~~~~~~iG~-fde~~------fi~~~D~e~~~R~~~ 185 (281)
T TIGR01556 147 FLISSGCLITREVYQRLGM-MDEEL------FIDHVDTEWSLRAQN 185 (281)
T ss_pred EEEcCcceeeHHHHHHhCC-ccHhh------cccchHHHHHHHHHH
Confidence 5677788999987664421 11111 235788887776544
No 29
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=94.17 E-value=0.19 Score=42.85 Aligned_cols=109 Identities=9% Similarity=0.086 Sum_probs=69.3
Q ss_pred EEEEeecCcHHHHHHHHHHccCC---CccEEEEEeCCCCCCCch-hHHHHHHhhhccCCCCcceeEEEeecCCcc--ccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCP---GLDSIHLVWSEPDPPSDS-LQIFLQHIIRKNSRNGRQVELKFDINTEDS--LNN 148 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p---~l~~IvVVWn~~~~Pp~~-l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--Lnn 148 (332)
|+|.+|++.+.|.+.|.++.+.. ...||+|+=|+......+ +..+..+ . ..+++...++|. -.+
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~-----~-----~~~~~~~~~~n~G~~~a 70 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAAR-----V-----PRVRVIRLSRNFGKGAA 70 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHh-----C-----CCeEEEEccCCCCccHH
Confidence 57899999888888888876553 367888887665433321 1122111 1 012334444331 222
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHH-HHhCCCCeeecC
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDV-WRSAPDQMVGFV 193 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~v-Wr~~PdRlVGf~ 193 (332)
+=.-....++|.|+.+|+|..+.++.|+-..+. .+..++-++|..
T Consensus 71 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 116 (185)
T cd04179 71 VRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSR 116 (185)
T ss_pred HHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 223334567799999999999999999998888 445566666653
No 30
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=93.79 E-value=0.6 Score=37.04 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=61.1
Q ss_pred EEEEeecCcHHHHHHHHHHccCC-CccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCC--cccccccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCP-GLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTE--DSLNNRFK 151 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p-~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~--nsLnnRF~ 151 (332)
++|.++++.+.|..+++++.+.. ...+|+|+=|+........ ..... .... ++....... ..-.++-.
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~----~~~~--~~~~~~~~~~~g~~~~~~~ 71 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEI---LEEYA----KKDP--RVIRVINEENQGLAAARNA 71 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHH---HHHHH----hcCC--CeEEEEecCCCChHHHHHH
Confidence 57899999999999999987765 3456776655544333221 11110 0001 111222222 22223333
Q ss_pred ccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 152 EIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 152 P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
-.....+|-|+.+|+|..+.++.++........+++
T Consensus 72 ~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~ 107 (156)
T cd00761 72 GLKAARGEYILFLDADDLLLPDWLERLVAELLADPE 107 (156)
T ss_pred HHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCC
Confidence 334458999999999999999988876455555554
No 31
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.66 E-value=0.41 Score=42.16 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=63.9
Q ss_pred eeEEEEeecCcHHHHHHHHHHccCC-CccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcccccccc
Q 020041 73 YAILMNTWKRYDLLKQSIAHYAKCP-GLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLNNRFK 151 (332)
Q Consensus 73 FTvvi~ty~R~~~L~~~l~~~~~~p-~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLnnRF~ 151 (332)
.||+|.+|++.+.|.+.|+.+.... .--+|+|| ++..... .. +.+.. ..+++...+.+.=.++-.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivv-dd~s~d~-~~-~~~~~-----------~~~~~~~~~~g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVV-DGGSTDG-TV-AIARS-----------AGVVVISSPKGRARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEE-eCCCCcc-HH-HHHhc-----------CCeEEEeCCcCHHHHHHH
Confidence 4899999999888888887765432 34578888 5443222 11 22110 122333222221111222
Q ss_pred ccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecC
Q 020041 152 EIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFV 193 (332)
Q Consensus 152 P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~ 193 (332)
-....+++-|+.+|+|..++++-++-.+......+. .+|..
T Consensus 67 g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~ 107 (221)
T cd02522 67 GAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAF 107 (221)
T ss_pred HHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEE
Confidence 334567999999999999999999987766655543 55543
No 32
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=93.64 E-value=0.35 Score=47.18 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=67.2
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHH----ccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHY----AKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS 145 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~----~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns 145 (332)
..+.+|||.+|+..+.|.+.++.+ .+.+.--||+||=++...... +.+..... .....++....++|.
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~---~il~~~~~-----~~~~~v~~i~~~~n~ 76 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSA---EMLVEAAQ-----APDSHIVAILLNRNY 76 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHH---HHHHHHHh-----hcCCcEEEEEeCCCC
Confidence 456999999998766666655543 333334588888433322221 12111100 001123333333331
Q ss_pred c--cccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeec
Q 020041 146 L--NNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGF 192 (332)
Q Consensus 146 L--nnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf 192 (332)
= .....-...-+.|.|+.+|+|...++++|+...+.|++..| +||.
T Consensus 77 G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~D-vV~~ 124 (325)
T PRK10714 77 GQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYD-VVGT 124 (325)
T ss_pred CHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCC-EEEE
Confidence 1 12222233457899999999999999999999999987766 6764
No 33
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.62 E-value=0.42 Score=42.16 Aligned_cols=108 Identities=12% Similarity=0.220 Sum_probs=64.6
Q ss_pred EEEEeecCcHHHHHHHHHHccCC--CccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-cccccc-
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCP--GLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-SLNNRF- 150 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p--~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-sLnnRF- 150 (332)
|||.+|++.+.|.++|+.+.+.. .--||+||=|+...... +.+..... ... .+++...+.| ...+.+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~---~~~~~~~~-----~~~-~i~~~~~~~n~G~~~a~n 71 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTA---EIVRELAK-----EYP-RVRLIVRPGKRGLGSAYI 71 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChH---HHHHHHHH-----hCC-ceEEEecCCCCChHHHHH
Confidence 58999999998999888875432 34678887333322221 22111110 011 2344444433 222222
Q ss_pred cccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhC-CCCeee
Q 020041 151 KEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSA-PDQMVG 191 (332)
Q Consensus 151 ~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~-PdRlVG 191 (332)
.-.....+|.|+.+|+|..++++.|+...+.+.+. ++-++|
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23346778999999999999999999998886554 444444
No 34
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=92.25 E-value=0.85 Score=39.15 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=62.2
Q ss_pred EEEEeecCcHHHHHHHHHHcc----CCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc--ccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAK----CPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS--LNN 148 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~----~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--Lnn 148 (332)
|+|.||++.+.|.++++.+.+ ...--||+||=++...... +.+..... . .+ .+++...++|. -+.
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~---~~~~~~~~-~--~~---~i~~i~~~~n~G~~~a 71 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTL---EILRELAA-R--DP---RVKVIRLSRNFGQQAA 71 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHH---HHHHHHHh-h--CC---CEEEEEecCCCCcHHH
Confidence 589999988877766665532 2233488888444332221 11111110 0 01 24444444331 122
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeec
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGF 192 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf 192 (332)
+-.-....+.|.|+.+|+|..++++.|+...+...+..+-+.|.
T Consensus 72 ~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~ 115 (181)
T cd04187 72 LLAGLDHARGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGV 115 (181)
T ss_pred HHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEE
Confidence 21223356789999999999999999999999855555444443
No 35
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=92.16 E-value=3.1 Score=42.16 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=65.5
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHHccCCCc---cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCC---
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHYAKCPGL---DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTE--- 143 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~~~~p~l---~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~--- 143 (332)
.-.+||+|.+|+..+.|.+.|+.+.+..+- -+|+|| +|..... ..+.+..... . ...+-++......
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVV-Dd~StD~--T~~il~~~~~-~---~~~v~v~~~~~~~Gka 120 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILA-NNQSTDD--SFQVFCRAQN-E---FPGLSLRYMNSDQGKA 120 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEE-ECCCChh--HHHHHHHHHH-h---CCCeEEEEeCCCCCHH
Confidence 346999999999889999999987554332 268888 4433221 1111111100 0 0112222111111
Q ss_pred ccccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 144 DSLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 144 nsLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
..+|.=+ ...++|-|+.+|+|..+.++.|+-..+.-.++|+
T Consensus 121 ~AlN~gl---~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~ 161 (439)
T TIGR03111 121 KALNAAI---YNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPD 161 (439)
T ss_pred HHHHHHH---HHccCCEEEEECCCCCcChHHHHHHHHHHHhCCC
Confidence 1233333 3467899999999999999999988888877885
No 36
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.08 E-value=0.83 Score=38.90 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=56.3
Q ss_pred EEEEeecCcHHHHHHHHHHccCCCc-cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcccc---ccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCPGL-DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLN---NRF 150 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p~l-~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLn---nRF 150 (332)
|||.+|++.+.|.+.|..+.+-... .||+|+ ++..+.. ..+.+..... ....++.......+... ++=
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivv-dd~s~d~--t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIA-DDGSTEE--TKELIEEFKS-----QFPIPIKHVWQEDEGFRKAKIRN 72 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEE-eCCCchh--HHHHHHHHHh-----hcCCceEEEEcCCcchhHHHHHH
Confidence 5899999999999999998654332 366554 5544222 1122222110 01122332222221110 111
Q ss_pred cccCCCCCcEEEEecCCCCcChhHHHHHHHHH
Q 020041 151 KEIKDLKADAVFSIDDDIIFPCHSVKFAFDVW 182 (332)
Q Consensus 151 ~P~~~i~T~AVLslDDDi~l~~~elefaF~vW 182 (332)
.-....++|-|+.+|+|..++++-|+...+.-
T Consensus 73 ~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 73 KAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 12234678999999999999998888776654
No 37
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=92.04 E-value=4.6 Score=40.85 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=68.7
Q ss_pred CCeeEEEEeecCcHHHHHHHHHHccC--CCccEEEEEeCCCCCCC-chhHHHHHHhhhccCCCCcceeEEEeecCCc---
Q 020041 71 KGYAILMNTWKRYDLLKQSIAHYAKC--PGLDSIHLVWSEPDPPS-DSLQIFLQHIIRKNSRNGRQVELKFDINTED--- 144 (332)
Q Consensus 71 ~~FTvvi~ty~R~~~L~~~l~~~~~~--p~l~~IvVVWn~~~~Pp-~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n--- 144 (332)
...||+|.+|+....+.+.|+.+.+. |. -||+||=++..... +...++.. . .+ .++++..++|
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sll~q~yp~-~eIivVdDgs~D~t~~~~~~~~~-----~--~~---~v~vv~~~~n~Gk 143 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAALAQTYTN-IEVIAINDGSSDDTAQVLDALLA-----E--DP---RLRVIHLAHNQGK 143 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHcCCCCC-eEEEEEECCCCccHHHHHHHHHH-----h--CC---CEEEEEeCCCCCH
Confidence 46999999999888888888886543 43 47888744433222 11111111 0 01 1333332221
Q ss_pred --cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC-eeecCCce
Q 020041 145 --SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ-MVGFVPRK 196 (332)
Q Consensus 145 --sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR-lVGf~~R~ 196 (332)
.+|.=. ..-++|-|+.+|.|..++++.|+...+...++|+- .|+-.++.
T Consensus 144 a~AlN~gl---~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~ 195 (444)
T PRK14583 144 AIALRMGA---AAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRI 195 (444)
T ss_pred HHHHHHHH---HhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEcccee
Confidence 222211 23578999999999999999999988888777753 45544543
No 38
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=91.67 E-value=1.5 Score=39.14 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=61.5
Q ss_pred eEEEEeecCc-HHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-c--ccc
Q 020041 74 AILMNTWKRY-DLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-S--LNN 148 (332)
Q Consensus 74 Tvvi~ty~R~-~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-s--Lnn 148 (332)
+|+|.+|+.. +.|.+.++++.+..+ --+|+||=|+...+. .++....... .. + ..++++...+| . -.+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t--~~~~i~~~~~-~~--~--~~i~~i~~~~~~G~~~~a 73 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEA--LWKPVEAHCA-QL--G--ERFRFFHVEPLPGAKAGA 73 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchh--HHHHHHHHHH-Hh--C--CcEEEEEcCCCCCCchHH
Confidence 6899999976 689999998866543 248888855443332 1111111110 00 1 12233322221 1 111
Q ss_pred cccccCCC--CCcEEEEecCCCCcChhHHHHHHHHHHhCCC-Ceee
Q 020041 149 RFKEIKDL--KADAVFSIDDDIIFPCHSVKFAFDVWRSAPD-QMVG 191 (332)
Q Consensus 149 RF~P~~~i--~T~AVLslDDDi~l~~~elefaF~vWr~~Pd-RlVG 191 (332)
+-.-.... .+|.|+.+|+|..++++.|+......+ +|+ -+|+
T Consensus 74 ~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~ 118 (236)
T cd06435 74 LNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQ 118 (236)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEe
Confidence 11111222 379999999999999999998877765 443 3444
No 39
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=90.72 E-value=0.05 Score=55.87 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=93.3
Q ss_pred cccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceeccccCcccccee
Q 020041 147 NNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVL 226 (332)
Q Consensus 147 nnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YSmVL 226 (332)
..|+.++.++-++++|.|+-...-+...-.|..-+|.-.|-.|.++ +. ..|.+. ..|+ .||+++
T Consensus 331 ~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~------~~-----lpf~~~----~d~~-~fSV~v 394 (464)
T KOG1021|consen 331 CDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDG------IQ-----LPFGDV----LDWT-EFSVFV 394 (464)
T ss_pred cCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCC------cc-----cCcCCC----ccce-EEEEEE
Confidence 4788999999999999999999988888889999999999999988 11 236554 3567 999999
Q ss_pred cceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhhCCCCeEEecee--cccccccCCCCCCchHHHH
Q 020041 227 SKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPPIWVKGKI--YEIGSTGISTLGGHSEKRT 301 (332)
Q Consensus 227 T~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~k~--~~~~~~giS~~~~H~~~Rs 301 (332)
+ .+.+++.+.+...+. +.+++ ...||++++ ++..+.+.+|| ...... ...-..|++.+..|..++.
T Consensus 395 ~-~~~v~~~~~~iL~~i---~~~~~---~~m~~~v~~-~v~r~~~~~~~-~~~~~~da~~~~~~~v~~r~~~~~~~~ 462 (464)
T KOG1021|consen 395 P-EKDVPELIKNILLSI---PEEEV---LRMRENVIR-LVPRHFLKKPP-GPPKRGDAFHMILHSLWRRLHKLRSRR 462 (464)
T ss_pred E-HHHhhhHHHHHHHhc---CHHHH---HHHHHHHHH-HHHhhEEeCCC-CCCCcchhHHHHHhhhhhccccccccc
Confidence 9 888988733333221 23333 678999999 99999999997 111110 1112345777666655443
No 40
>PRK10073 putative glycosyl transferase; Provisional
Probab=90.44 E-value=2.8 Score=40.92 Aligned_cols=114 Identities=8% Similarity=0.002 Sum_probs=68.3
Q ss_pred CCeeEEEEeecCcHHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc-c-c
Q 020041 71 KGYAILMNTWKRYDLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS-L-N 147 (332)
Q Consensus 71 ~~FTvvi~ty~R~~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns-L-n 147 (332)
...||||.+|++.+.|.+.|..+.+-.. --||+|| ++..+ +... +.+..... . ...+++..++ |. + .
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiV-dDgSt-D~t~-~i~~~~~~-----~-~~~i~vi~~~-n~G~~~ 75 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIV-NDGST-DNSV-EIAKHYAE-----N-YPHVRLLHQA-NAGVSV 75 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEE-eCCCC-ccHH-HHHHHHHh-----h-CCCEEEEECC-CCChHH
Confidence 3699999999999999999998754322 2377777 33332 2111 22221110 0 1124444333 32 2 1
Q ss_pred ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCC
Q 020041 148 NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVP 194 (332)
Q Consensus 148 nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~ 194 (332)
.|=.-....++|-|+.+|+|-.+.++.++-..+.-.+..--+|...+
T Consensus 76 arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~ 122 (328)
T PRK10073 76 ARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNA 122 (328)
T ss_pred HHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEcc
Confidence 22233456799999999999999999998887776555444554443
No 41
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=88.85 E-value=4.6 Score=36.83 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=63.3
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHHcc-CCC--ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc--
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHYAK-CPG--LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-- 144 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~~~-~p~--l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-- 144 (332)
....||||.+|+..+.|...+..+.+ ... --||+||=++.. .. ..+++..... .. +. ..+++...++|
T Consensus 8 ~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~-t~~i~~~~~~-~~-~~--~~v~~~~~~~n~G 80 (243)
T PLN02726 8 AMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSP--DG-TQDVVKQLQK-VY-GE--DRILLRPRPGKLG 80 (243)
T ss_pred CceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CC-HHHHHHHHHH-hc-CC--CcEEEEecCCCCC
Confidence 34799999999877766655544322 111 237888733322 21 1122222110 00 11 12333333333
Q ss_pred ---cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhC-CCCeee
Q 020041 145 ---SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSA-PDQMVG 191 (332)
Q Consensus 145 ---sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~-PdRlVG 191 (332)
.+|.=+ ...++|.|+.+|+|..++++.|+..++...+. .+-++|
T Consensus 81 ~~~a~n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 81 LGTAYIHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred HHHHHHHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 122222 34679999999999999999999999888765 444445
No 42
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=88.46 E-value=1.9 Score=37.36 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=62.6
Q ss_pred EEEEeecCcHHHHHHHHHHccC--C-CccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-----cc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKC--P-GLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-----SL 146 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~--p-~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-----sL 146 (332)
|+|.+|+..+.|.+.|+++.+. | ..-+|+||=++.. + ...+.... . ...+..+..+.| .+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D-~t~~~~~~-----~----~~~~~~~~~~~~~gk~~al 68 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--D-DTAQVARA-----A----GATVLERHDPERRGKGYAL 68 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--c-hHHHHHHH-----c----CCeEEEeCCCCCCCHHHHH
Confidence 5899999888999999987543 2 2357888744332 1 11122111 1 112222211211 12
Q ss_pred cccccccC--CCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeec
Q 020041 147 NNRFKEIK--DLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGF 192 (332)
Q Consensus 147 nnRF~P~~--~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf 192 (332)
|.=+.-.. .-+.|.|+.+|.|..++++.|+...+...+.++-+.|.
T Consensus 69 n~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~ 116 (183)
T cd06438 69 DFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAY 116 (183)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEE
Confidence 21121111 23588999999999999999999888888777655554
No 43
>PRK10018 putative glycosyl transferase; Provisional
Probab=88.13 E-value=3.2 Score=39.74 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=68.8
Q ss_pred CeeEEEEeecCcHHHHHHHHHHcc--CCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc--cc
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAK--CPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS--LN 147 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~--~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns--Ln 147 (332)
..||+|.||++.+.|.+.|....+ .+. -||+||=++... .+...++... .. ...|++...+.|. -.
T Consensus 6 ~VSVIip~yN~~~~l~~~l~Svl~Qt~~~-~EiIVVDDgS~~-~~~~~~~~~~-----~~---~~ri~~i~~~~n~G~~~ 75 (279)
T PRK10018 6 LISIYMPTWNRQQLAIRAIKSVLRQDYSN-WEMIIVDDCSTS-WEQLQQYVTA-----LN---DPRITYIHNDINSGACA 75 (279)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHhCCCCC-eEEEEEECCCCC-HHHHHHHHHH-----cC---CCCEEEEECCCCCCHHH
Confidence 489999999999988888887532 333 478888444331 1122222211 01 1245666665543 22
Q ss_pred ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 148 NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 148 nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
.|-.-....+.|-|+.+|+|..+.++.|+...+...+.+.
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~ 115 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVT 115 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCC
Confidence 3334455678999999999999999999988888877554
No 44
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=86.61 E-value=10 Score=41.10 Aligned_cols=103 Identities=10% Similarity=0.187 Sum_probs=64.7
Q ss_pred CCeeEEEEeecCcH-HHHHHHHHHccCCCc---cEEEEEeCCCC-----CCC----------chhHHHHHHhhhccCCCC
Q 020041 71 KGYAILMNTWKRYD-LLKQSIAHYAKCPGL---DSIHLVWSEPD-----PPS----------DSLQIFLQHIIRKNSRNG 131 (332)
Q Consensus 71 ~~FTvvi~ty~R~~-~L~~~l~~~~~~p~l---~~IvVVWn~~~-----~Pp----------~~l~~~~~~~~~~~~~~~ 131 (332)
...+|+|.||+... .+.+++....+..+- -+|+|+=++.. .|+ +.+.++..
T Consensus 131 P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~---------- 200 (713)
T TIGR03030 131 PTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR---------- 200 (713)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH----------
Confidence 46999999998764 567788876555443 37777733311 121 11111111
Q ss_pred cceeEEEeecCCc------cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 132 RQVELKFDINTED------SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 132 ~~vpv~~~~~~~n------sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
..+++++..++| .||+=. ...+.|-|+.+|.|..+.++-|+.......++|+
T Consensus 201 -~~~v~yi~r~~n~~~KAgnLN~al---~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~ 258 (713)
T TIGR03030 201 -KLGVNYITRPRNVHAKAGNINNAL---KHTDGELILIFDADHVPTRDFLQRTVGWFVEDPK 258 (713)
T ss_pred -HcCcEEEECCCCCCCChHHHHHHH---HhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCC
Confidence 124455544333 234332 3467899999999999999999998888877775
No 45
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=86.07 E-value=2.1 Score=42.49 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=57.0
Q ss_pred eEEEEeecCcHHHHHHHHHHccC-CC--ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCccccc--
Q 020041 74 AILMNTWKRYDLLKQSIAHYAKC-PG--LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLNN-- 148 (332)
Q Consensus 74 Tvvi~ty~R~~~L~~~l~~~~~~-p~--l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLnn-- 148 (332)
.|+|.||+|++-|++.|+.+.+. |+ -.+|+|.=.+.+....+ .... . ...|+++.++..+..|
T Consensus 3 PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~---~v~~-----~----~~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 3 PVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVAD---VAKS-----F----GDGVTHIQHPPISIKNVN 70 (334)
T ss_pred CEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHH---HHHh-----h----ccccEEEEcccccccccC
Confidence 48999999999999999998665 23 34677774443322211 1110 0 0123333333221111
Q ss_pred ---ccccc---------------CCCCCcEEEEecCCCCcChhHHHH---HHHHHHhCC
Q 020041 149 ---RFKEI---------------KDLKADAVFSIDDDIIFPCHSVKF---AFDVWRSAP 186 (332)
Q Consensus 149 ---RF~P~---------------~~i~T~AVLslDDDi~l~~~elef---aF~vWr~~P 186 (332)
.|..+ .....+.|+.+|||..++++=++| +...-+..|
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~ 129 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDP 129 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCC
Confidence 11111 123579999999999999996654 444444444
No 46
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=85.19 E-value=2.5 Score=37.36 Aligned_cols=179 Identities=10% Similarity=0.058 Sum_probs=91.5
Q ss_pred EEEEeecCcHHHHHHHHHHcc-----CCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc-cc-c
Q 020041 75 ILMNTWKRYDLLKQSIAHYAK-----CPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-SL-N 147 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~-----~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-sL-n 147 (332)
|||.+|+..+.|.+.|+.+.+ .+.-.||+||=++...-.. +.+..... ..+..++++..++| .. .
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~---~~~~~~~~-----~~~~~i~~i~~~~n~G~~~ 72 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTA---EVARKLAR-----KNPALIRVLTLPKNRGKGG 72 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchH---HHHHHHHH-----hCCCcEEEEEcccCCCcHH
Confidence 588899877777666666432 2345688888444332211 11111110 11112355554433 11 1
Q ss_pred ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHh-CCCCeeecCCceeeeecCCCCccee--ecc-----eeccccC
Q 020041 148 NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRS-APDQMVGFVPRKVCVESKEGKDYYS--YCG-----WWSVWWT 219 (332)
Q Consensus 148 nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~-~PdRlVGf~~R~h~~~~~~~~~~w~--Y~~-----~~~~~~~ 219 (332)
.+-.-......|-|+.+|+|..++++.|+...+.-.+ ..+-++|- |....+....+..|. +.+ ....-..
T Consensus 73 a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (211)
T cd04188 73 AVRAGMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGS--RAHLASAAVVKRSWLRNLLGRGFNFLVRLLLG 150 (211)
T ss_pred HHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE--eeccCCcccccccHHHHHHHHHHHHHHHHHcC
Confidence 1112233567799999999999999999988877443 44555653 332111100000111 000 0000011
Q ss_pred ccccceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhh
Q 020041 220 GTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVT 271 (332)
Q Consensus 220 ~~YSmVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T 271 (332)
..+.-.++|+.|+.|..+..... ..+...-++|+-|.+.+...-
T Consensus 151 ~~~~d~~~g~~~~~r~~~~~~~~--------~~~~~~~~~d~el~~r~~~~g 194 (211)
T cd04188 151 LGIKDTQCGFKLFTRDAARRLFP--------RLHLERWAFDVELLVLARRLG 194 (211)
T ss_pred CCCcccccCceeEcHHHHHHHHh--------hhhccceEeeHHHHHHHHHcC
Confidence 23444567888888877654321 122334577888887777643
No 47
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=84.29 E-value=9.1 Score=36.53 Aligned_cols=108 Identities=18% Similarity=0.072 Sum_probs=67.6
Q ss_pred CCeeEEEEeecCcHHHHHHHHHHccCCCccEEEE-EeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc----c
Q 020041 71 KGYAILMNTWKRYDLLKQSIAHYAKCPGLDSIHL-VWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED----S 145 (332)
Q Consensus 71 ~~FTvvi~ty~R~~~L~~~l~~~~~~p~l~~IvV-VWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n----s 145 (332)
...+++|.||+|.+.|.+.+..+.+.....+.+| |=|+...-.. +....- . ..-|+++....| -
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~---~~~~~~----~----~~~v~~i~~~~NlG~ag 71 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSL---EALKAR----F----FPNVRLIENGENLGFAG 71 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCH---HHHHhh----c----CCcEEEEEcCCCccchh
Confidence 4678999999999999999998877766666665 3222222221 111110 0 123566666655 1
Q ss_pred ccccccccCCCCCc-EEEEecCCCCcChhHHHHHHHHHHhCCCCe
Q 020041 146 LNNRFKEIKDLKAD-AVFSIDDDIIFPCHSVKFAFDVWRSAPDQM 189 (332)
Q Consensus 146 LnnRF~P~~~i~T~-AVLslDDDi~l~~~elefaF~vWr~~PdRl 189 (332)
=+|+-.-...=+.+ .|+.+++|+.+.++.|+--.+.=.+.|+-.
T Consensus 72 g~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~ 116 (305)
T COG1216 72 GFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAG 116 (305)
T ss_pred hhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCe
Confidence 22321111111112 799999999999999999999998887653
No 48
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=82.76 E-value=38 Score=33.14 Aligned_cols=109 Identities=10% Similarity=0.073 Sum_probs=63.3
Q ss_pred CCCCCeeEEEEeecCcHHHHHHHHHHcc--------C-CCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEE
Q 020041 68 SPGKGYAILMNTWKRYDLLKQSIAHYAK--------C-PGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKF 138 (332)
Q Consensus 68 ~~~~~FTvvi~ty~R~~~L~~~l~~~~~--------~-p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~ 138 (332)
.+....+|||.+|+-.+.|.+.++...+ - ..--||+||=++...-.. +.+.........+ ...+++
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~---~i~~~~~~~~~~~--~~~i~v 141 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTL---KVAKDFWRQNINP--NIDIRL 141 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchH---HHHHHHHHhcCCC--CCcEEE
Confidence 3466799999999876666665554321 1 224589998443322211 2211111110001 123555
Q ss_pred eecCCc-----cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHh
Q 020041 139 DINTED-----SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRS 184 (332)
Q Consensus 139 ~~~~~n-----sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~ 184 (332)
...++| .+|.= ...-+.|-|+.+|.|...+.++++...+..++
T Consensus 142 i~~~~N~G~~~A~~~G---i~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 142 LSLLRNKGKGGAVRIG---MLASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred EEcCCCCChHHHHHHH---HHHccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 554444 12221 22346799999999999999999999888876
No 49
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=78.84 E-value=9.7 Score=36.02 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=63.6
Q ss_pred eEEEEeecCc------HHHHHHHHHHcc--CCCccEEEEEeCCCCCCC-chhHHHHHHhhhccCCCCcceeEEEeecCC-
Q 020041 74 AILMNTWKRY------DLLKQSIAHYAK--CPGLDSIHLVWSEPDPPS-DSLQIFLQHIIRKNSRNGRQVELKFDINTE- 143 (332)
Q Consensus 74 Tvvi~ty~R~------~~L~~~l~~~~~--~p~l~~IvVVWn~~~~Pp-~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~- 143 (332)
||||..+.+. +.|+..+..++. .+.--||+||-++....- +.+..+... . ... +++..+.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~--------~-~~~-~~i~~~~~ 70 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEK--------N-GFI-RYIRHEDN 70 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhc--------c-Cce-EEEEcCCC
Confidence 6889988655 234444666554 355568999988876442 223222111 1 111 1222211
Q ss_pred c---c-ccccccccCCCCCcEEEEecCCCCcChhHHHHHHH---HHHhCCCCeeecCC
Q 020041 144 D---S-LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFD---VWRSAPDQMVGFVP 194 (332)
Q Consensus 144 n---s-LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~---vWr~~PdRlVGf~~ 194 (332)
+ + =-.|=.-...-++|-|+.+|-|+.++++-|+-+.+ .=.++|+.++.++.
T Consensus 71 ~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~ 128 (281)
T PF10111_consen 71 GEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPC 128 (281)
T ss_pred CCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 1 0 00111112246999999999999999999999988 23346777766664
No 50
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.57 E-value=16 Score=29.12 Aligned_cols=103 Identities=11% Similarity=0.004 Sum_probs=58.4
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHHccCCCc-cEEEEEeCCCCCCCch-hHHHHHHhhhccCCCCcceeEEEeecCCc--c
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHYAKCPGL-DSIHLVWSEPDPPSDS-LQIFLQHIIRKNSRNGRQVELKFDINTED--S 145 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~~~~p~l-~~IvVVWn~~~~Pp~~-l~~~~~~~~~~~~~~~~~vpv~~~~~~~n--s 145 (332)
..+++|+|.||++...|.+.|+.+.....- .||+||=++......+ ...+... . ..+.....+.| -
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~----~------~~~~~~~~~~~~g~ 71 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAK----D------VRVIRLINERNGGL 71 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhh----c------ceEEEeecccCCCh
Confidence 357899999999999999999987654333 3777765544433222 2222111 0 01222222222 1
Q ss_pred ccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHH
Q 020041 146 LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWR 183 (332)
Q Consensus 146 LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr 183 (332)
-.+|=.-......|.|+.+|+|.. ..+.+...+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~~ 108 (291)
T COG0463 72 GAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAGG 108 (291)
T ss_pred HHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence 122222222344499999999999 8888776444443
No 51
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=76.61 E-value=48 Score=37.11 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCeeEEEEeecCc-HHHHHHHHHHccCCCc---cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc--
Q 020041 71 KGYAILMNTWKRY-DLLKQSIAHYAKCPGL---DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED-- 144 (332)
Q Consensus 71 ~~FTvvi~ty~R~-~~L~~~l~~~~~~p~l---~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n-- 144 (332)
-..+|+|.||+-. +.+.+++....+..+= -||+|+ +|.+.+ +..++... ..++++..++|
T Consensus 260 P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVV-DDgS~D--~t~~la~~-----------~~v~yI~R~~n~~ 325 (852)
T PRK11498 260 PTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWIL-DDGGRE--EFRQFAQE-----------VGVKYIARPTHEH 325 (852)
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEE-eCCCCh--HHHHHHHH-----------CCcEEEEeCCCCc
Confidence 3799999999865 4666777664443332 267777 443322 23233221 13455444333
Q ss_pred ----cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 145 ----SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 145 ----sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
.+|+=. ...+.|-|+.+|.|..+..+-|+.....-.++|+
T Consensus 326 gKAGnLN~aL---~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 326 AKAGNINNAL---KYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred chHHHHHHHH---HhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCC
Confidence 133323 2367899999999999999999988777777886
No 52
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.87 E-value=49 Score=32.45 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=67.5
Q ss_pred CCCeeEEEEeec-CcHHHHHHHHHHccCCCc-cEEEEEeCCCCCCCc-hhHHHHHHhhhccCCCCcceeEEEeec-C---
Q 020041 70 GKGYAILMNTWK-RYDLLKQSIAHYAKCPGL-DSIHLVWSEPDPPSD-SLQIFLQHIIRKNSRNGRQVELKFDIN-T--- 142 (332)
Q Consensus 70 ~~~FTvvi~ty~-R~~~L~~~l~~~~~~p~l-~~IvVVWn~~~~Pp~-~l~~~~~~~~~~~~~~~~~vpv~~~~~-~--- 142 (332)
..+.+++|.+|+ ..+.+.+.++...+..+- .+|+||=.+.+++.. -..+..... ..-+++... .
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 123 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEY---------GPNFRVIYPEKKNG 123 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhc---------CcceEEEeccccCc
Confidence 378999999996 455899999987766554 477777655544332 111111110 011222211 1
Q ss_pred --CccccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC
Q 020041 143 --EDSLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ 188 (332)
Q Consensus 143 --~nsLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR 188 (332)
.+.+|+-+. .-+.|-|+.+|-|..++++.|.-+..-....+.-
T Consensus 124 gK~~al~~~l~---~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 124 GKAGALNNGLK---RAKGDVVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred cchHHHHHHHh---hcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 134555554 3449999999999999999998887666666655
No 53
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=73.79 E-value=13 Score=36.05 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCCCeeEEEEeecCcHHHHHHHHHHccC---CCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCccee-EEEe-ecCC
Q 020041 69 PGKGYAILMNTWKRYDLLKQSIAHYAKC---PGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVE-LKFD-INTE 143 (332)
Q Consensus 69 ~~~~FTvvi~ty~R~~~L~~~l~~~~~~---p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vp-v~~~-~~~~ 143 (332)
...+.+|||.+|+..+.|.+.|..+.+. +...+|+||=++...-. .+.+... +..-++ .++. ..+.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T---~~ia~~~------~~~v~~~~~~~~~~~~ 99 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDAT---AERAAAA------GARVVSREEILPELPP 99 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHH---HHHHHHh------cchhhcchhhhhcccc
Confidence 3568999999999888888877776532 34568988755443211 1111110 000000 0000 0011
Q ss_pred c--cccccccccCCCCCcEEEEecCCCC-cChhHHHHHHHHHHhCCC--CeeecCCce
Q 020041 144 D--SLNNRFKEIKDLKADAVFSIDDDII-FPCHSVKFAFDVWRSAPD--QMVGFVPRK 196 (332)
Q Consensus 144 n--sLnnRF~P~~~i~T~AVLslDDDi~-l~~~elefaF~vWr~~Pd--RlVGf~~R~ 196 (332)
| .-.+...-...-+.|.|+.+|.|.. ++++.|+-.......+|+ =+.|++.|.
T Consensus 100 n~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~ 157 (306)
T PRK13915 100 RPGKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRP 157 (306)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccc
Confidence 1 1111111123457899999999996 899999988887766664 355776664
No 54
>PRK10063 putative glycosyl transferase; Provisional
Probab=62.93 E-value=47 Score=30.84 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=50.3
Q ss_pred CeeEEEEeecCcHHHHHHHHHHcc---CCCc-cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcccc
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAK---CPGL-DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLN 147 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~---~p~l-~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLn 147 (332)
..||||.||+..+.|.+.|+.+.+ -+.. -||+|| ++..+ . ...+.+.. .... .+++++.++.+.+.
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVv-DdgSt-D-~t~~i~~~-----~~~~--~~i~~i~~~~~G~~ 71 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVV-DGGSN-D-GTREFLEN-----LNGI--FNLRFVSEPDNGIY 71 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEE-ECcCc-c-cHHHHHHH-----hccc--CCEEEEECCCCCHH
Confidence 479999999988888888887642 1222 367776 43332 1 11122221 1111 13555544333211
Q ss_pred c-cccccCCCCCcEEEEec-CCCCcChhHHHH
Q 020041 148 N-RFKEIKDLKADAVFSID-DDIIFPCHSVKF 177 (332)
Q Consensus 148 n-RF~P~~~i~T~AVLslD-DDi~l~~~elef 177 (332)
. +=.-...-++|-|+.+| ||+..+ +.+++
T Consensus 72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~-~~~~~ 102 (248)
T PRK10063 72 DAMNKGIAMAQGRFALFLNSGDIFHQ-DAANF 102 (248)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccCc-CHHHH
Confidence 1 11122345789999999 666655 43443
No 55
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=53.06 E-value=21 Score=35.91 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=38.0
Q ss_pred CCCCeeEEEEeecCcHHHHHHHHHHccCCCccEEEEEeCCCC
Q 020041 69 PGKGYAILMNTWKRYDLLKQSIAHYAKCPGLDSIHLVWSEPD 110 (332)
Q Consensus 69 ~~~~FTvvi~ty~R~~~L~~~l~~~~~~p~l~~IvVVWn~~~ 110 (332)
+.+...+||+.++|++-|+.+|..+++..++.+.++|=+.+-
T Consensus 29 ~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~ 70 (356)
T PF05060_consen 29 ANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDF 70 (356)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccC
Confidence 468899999999999999999999999999999999987653
No 56
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.31 E-value=15 Score=30.02 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=10.4
Q ss_pred hccchhhHHHHHHHHHHHH
Q 020041 28 GSSKIKLLLCFCIAFTVLL 46 (332)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~ 46 (332)
|++|+-|||.+++|++|++
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4577755555555444443
No 57
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.67 E-value=65 Score=29.62 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCcHHHHHHHHHH----ccCCCccEEEEEeC
Q 020041 32 IKLLLCFCIAFTVLLLLSRGSTLTEWTDSGPLDRSSSPGKGYAILMNTWKRYDLLKQSIAHY----AKCPGLDSIHLVWS 107 (332)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~FTvvi~ty~R~~~L~~~l~~~----~~~p~l~~IvVVWn 107 (332)
-|+++++++|+.+++....+..-..|..++.+.......+....-|.|.+ +.|.++++.| +.-.-=-|+.|-=+
T Consensus 11 WKw~f~iLLAln~l~~~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitttr--~~LN~li~syl~~~~tee~~YKv~it~~ 88 (197)
T COG4698 11 WKWLFFILLALNTLLAVLIALFVLSPREEPTHLEDASEKSEKSFQITTTR--SQLNELINSYLEDYQTEEMPYKVYITDE 88 (197)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCCCchhhccCcccceeEEEEccH--HHHHHHHHHHHHHhhhccCCeEEEEecC
Confidence 36777777777766665555555555554333222221233333334443 4455555554 43322224444211
Q ss_pred CCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCccccccccccCCCCCcEEEEecC----CCCcChhHHHHHHHHHH
Q 020041 108 EPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLNNRFKEIKDLKADAVFSIDD----DIIFPCHSVKFAFDVWR 183 (332)
Q Consensus 108 ~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLnnRF~P~~~i~T~AVLslDD----Di~l~~~elefaF~vWr 183 (332)
...--. +..- -+..||+.+. |.|...=-.+-.|++++ -..+|.+++--=..---
T Consensus 89 ~v~f~a-~~kl-----------fG~~vpl~I~----------f~P~v~~NG~i~L~V~~fS~G~L~LPis~VLqym~s~y 146 (197)
T COG4698 89 HVEFEA-NYKL-----------FGTQVPLYIY----------FEPTVLQNGDIELSVTSFSLGGLPLPISHVLQYMKSMY 146 (197)
T ss_pred eEEEEE-Ehhh-----------hCccccEEEE----------EcceeecCCcEEEEEEEeecCCccCCHHHHHHHHHhhc
Confidence 111110 1111 1346787764 66766666777888876 34566666543222222
Q ss_pred hCCCCeeecC
Q 020041 184 SAPDQMVGFV 193 (332)
Q Consensus 184 ~~PdRlVGf~ 193 (332)
..|+=++=.+
T Consensus 147 ~lPefV~v~P 156 (197)
T COG4698 147 DLPEFVVVYP 156 (197)
T ss_pred cCCceEEEcc
Confidence 3575444333
No 58
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=42.66 E-value=1e+02 Score=26.77 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=56.0
Q ss_pred EEEEeecCcHHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecC---C-----ccc
Q 020041 75 ILMNTWKRYDLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINT---E-----DSL 146 (332)
Q Consensus 75 vvi~ty~R~~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~---~-----nsL 146 (332)
|||.+|+..+.|.+.|+.+.+...--+|+||=++.. .. ..+.+. . . . . ...++++... . ..+
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~-D~--t~~~~~-~--~-~-~--~~~v~~i~~~~~~~~~Gk~~al 70 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD-DD--TAGIVR-L--A-I-T--DSRVHLLRRHLPNARTGKGDAL 70 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC-cC--HHHHHh-h--e-e-c--CCcEEEEeccCCcCCCCHHHHH
Confidence 589999988899999998765432347777733332 21 111111 0 0 0 0 1123333221 1 123
Q ss_pred cccccccC--------CCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 147 NNRFKEIK--------DLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 147 nnRF~P~~--------~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
|.=+.-.. ..+.|.|+.+|.|..++++.|+..-... ++|+
T Consensus 71 n~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~-~~~~ 118 (191)
T cd06436 71 NAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF-SDPR 118 (191)
T ss_pred HHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh-cCCc
Confidence 33222111 1235789999999999999999854433 4563
No 59
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=40.32 E-value=5.3e+02 Score=28.25 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=63.2
Q ss_pred CCCCCCeeEEEEeecCc-H----HHHHHHHHHccCCCc--cEEEEEeCCCCCCCchh---HHHHHHhhhccCCCCcceeE
Q 020041 67 SSPGKGYAILMNTWKRY-D----LLKQSIAHYAKCPGL--DSIHLVWSEPDPPSDSL---QIFLQHIIRKNSRNGRQVEL 136 (332)
Q Consensus 67 ~~~~~~FTvvi~ty~R~-~----~L~~~l~~~~~~p~l--~~IvVVWn~~~~Pp~~l---~~~~~~~~~~~~~~~~~vpv 136 (332)
.++..+-+|+|.+|+=. + .|...++.+....+- -+|+|+ ++...|.... ..+ ... .+...+ ...|
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vL-dD~~d~~~~~~e~~~~-~~L-~~~~~~--~~~i 194 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFIL-SDTRDPDIAAAEEAAW-LEL-RAELGG--EGRI 194 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCCChhHHHHHHHHH-HHH-HHhcCC--CCcE
Confidence 34466789999999733 2 245555554444333 366666 4544443111 011 111 111111 2234
Q ss_pred EEeecCCc------cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 137 KFDINTED------SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 137 ~~~~~~~n------sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
.++..++| .+++ |.-...-..|-|+.+|-|..++.|.|.........+|+
T Consensus 195 ~yr~R~~n~~~KaGNl~~-~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~ 250 (691)
T PRK05454 195 FYRRRRRNVGRKAGNIAD-FCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR 250 (691)
T ss_pred EEEECCcCCCccHHHHHH-HHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC
Confidence 45443333 2432 21111235699999999999999999999888887775
No 60
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=39.26 E-value=37 Score=29.27 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=23.4
Q ss_pred EEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 161 VFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 161 VLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
|+.+|+|+.++++.++.....++ +|+
T Consensus 2 v~~~DaDt~~~~d~l~~~~~~~~-~~~ 27 (193)
T PF13632_consen 2 VLFLDADTRLPPDFLERLVAALE-DPK 27 (193)
T ss_pred EEEEcCCCCCChHHHHHHHHHHh-CCC
Confidence 78999999999999999999988 664
No 61
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=38.34 E-value=58 Score=28.90 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.7
Q ss_pred CcEEEEecCCCCcChhHHHHHHHHH--HhCCCCeeecCCce
Q 020041 158 ADAVFSIDDDIIFPCHSVKFAFDVW--RSAPDQMVGFVPRK 196 (332)
Q Consensus 158 T~AVLslDDDi~l~~~elefaF~vW--r~~PdRlVGf~~R~ 196 (332)
.+-|+-+|||+.+..+.|.-.+.-. ...+..+.|...+.
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~ 121 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKN 121 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccC
Confidence 6889999999999999998877777 33467788887766
No 62
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=34.89 E-value=55 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=21.0
Q ss_pred hccchhhHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 020041 28 GSSKIKLLLCFCIAFTVLLLLSRGSTLTEWTDS 60 (332)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 60 (332)
|+.|.-++-++|+++.. ++++|.-|-.+..+
T Consensus 1 MA~Kl~vialLC~aLva--~vQ~APQYa~GeeP 31 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA--IVQSAPQYAPGEEP 31 (65)
T ss_pred CcchhhHHHHHHHHHHH--HHhcCcccCCCCCC
Confidence 35566566667776655 88999877766654
No 63
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=34.71 E-value=3.5e+02 Score=25.38 Aligned_cols=109 Identities=12% Similarity=0.136 Sum_probs=61.0
Q ss_pred eEEEEeecCcH-HHHHHHHHHcc----C--CCccEEEEEeCCCCCCCchhHH--HHHHhhhccCCCCcceeEEEeecCCc
Q 020041 74 AILMNTWKRYD-LLKQSIAHYAK----C--PGLDSIHLVWSEPDPPSDSLQI--FLQHIIRKNSRNGRQVELKFDINTED 144 (332)
Q Consensus 74 Tvvi~ty~R~~-~L~~~l~~~~~----~--p~l~~IvVVWn~~~~Pp~~l~~--~~~~~~~~~~~~~~~vpv~~~~~~~n 144 (332)
+|+|.+|+=.. .|...|+...+ . +.--+|+|+ ++.+.|.....+ -..... +..+. .+-|++...++|
T Consensus 2 SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vl-dD~~d~~~~~~~~~~~~~l~-~~~~~--~~~v~~~~r~~~ 77 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFIL-SDTRDPDIWLAEEAAWLDLC-EELGA--QGRIYYRRRREN 77 (254)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEE-CCCCChHHHHHHHHHHHHHH-HHhCC--CCcEEEEEcCCC
Confidence 68999997444 46666655332 1 123688777 655544211100 001010 11111 233444444333
Q ss_pred ------cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC
Q 020041 145 ------SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD 187 (332)
Q Consensus 145 ------sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd 187 (332)
.||+ +.....-+.|-|+.+|-|..+.++.|......-.++|.
T Consensus 78 ~g~Kag~l~~-~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~ 125 (254)
T cd04191 78 TGRKAGNIAD-FCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR 125 (254)
T ss_pred CCccHHHHHH-HHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence 2444 33222346789999999999999999998888777774
No 64
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=2.9e+02 Score=28.80 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=74.0
Q ss_pred eEEEEeec---CcHHHHHHHHHHccCCC--ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCC--ccc
Q 020041 74 AILMNTWK---RYDLLKQSIAHYAKCPG--LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTE--DSL 146 (332)
Q Consensus 74 Tvvi~ty~---R~~~L~~~l~~~~~~p~--l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~--nsL 146 (332)
|-||-||. |+.+|+..+.-+.++|. ++|||+|=...+.|. .. ..+..+ ..|++.++.+ .-+
T Consensus 126 TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dpe-d~-~~L~ri----------~kvr~LRN~~ReGLi 193 (559)
T KOG3738|consen 126 TSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPE-DG-KLLKRI----------PKVRVLRNNEREGLI 193 (559)
T ss_pred ceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChH-HH-HHHhhh----------heeeeecccchhhhh
Confidence 56777773 88888888888888886 999999966555443 22 222222 1234433332 235
Q ss_pred cccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeee
Q 020041 147 NNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVG 191 (332)
Q Consensus 147 nnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVG 191 (332)
-.|-+--+--...-+..+|-...++.+=||=-.+-=.+++.|.|.
T Consensus 194 rSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVs 238 (559)
T KOG3738|consen 194 RSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVS 238 (559)
T ss_pred hhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceee
Confidence 667666666677778899999999999898888888899998885
No 65
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=30.07 E-value=91 Score=28.46 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceee
Q 020041 155 DLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVC 198 (332)
Q Consensus 155 ~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~ 198 (332)
.-++|.|+.+|.|..++++.|+.....-.++| ++.|..++.+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p-~vg~v~g~~~~ 113 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDP-EIGGVCGEIHP 113 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCC-CEEEEEeeeEE
Confidence 44899999999999999999998877776777 45455566544
No 66
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=29.19 E-value=3.1e+02 Score=24.68 Aligned_cols=95 Identities=16% Similarity=0.236 Sum_probs=57.5
Q ss_pred HHHHHHHHHHccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcccccccccc-CCCCCcEEE
Q 020041 84 DLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLNNRFKEI-KDLKADAVF 162 (332)
Q Consensus 84 ~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLnnRF~P~-~~i~T~AVL 162 (332)
.++...+..+.+++.+.+|+|+=+.... .+....+... .+ +.++..+....-.++.-. ....+|+||
T Consensus 25 pli~~~i~~l~~~~~~~~ivVv~~~~~~-~~~i~~~~~~---------~~--v~~v~~~~~~~l~~~~~~~~~~~~d~vl 92 (233)
T cd02518 25 PLLEHLLDRLKRSKLIDEIVIATSTNEE-DDPLEALAKK---------LG--VKVFRGSEEDVLGRYYQAAEEYNADVVV 92 (233)
T ss_pred cHHHHHHHHHHhCCCCCeEEEECCCCcc-cHHHHHHHHH---------cC--CeEEECCchhHHHHHHHHHHHcCCCEEE
Confidence 5778888888888878899998664432 1222222110 11 233333332222222211 123578999
Q ss_pred EecCCCC-cChhHHHHHHHHHHhCCCCee
Q 020041 163 SIDDDII-FPCHSVKFAFDVWRSAPDQMV 190 (332)
Q Consensus 163 slDDDi~-l~~~elefaF~vWr~~PdRlV 190 (332)
.++=|.. ++.+.|+...+.+++++..++
T Consensus 93 i~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 93 RITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 9999997 689999999999987655444
No 67
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=28.00 E-value=1e+02 Score=24.33 Aligned_cols=46 Identities=13% Similarity=0.333 Sum_probs=32.6
Q ss_pred HHHHHHhccCCCchhHHHHHHHHhhhCCCCeEEeceecccccccCCCCCCchHHHHHHHHHHHHHhCCCCCCCeee
Q 020041 246 TSIKEFVTENRNCEDIAMSFLVANVTDAPPIWVKGKIYEIGSTGISTLGGHSEKRTQCLNRFAAEFGRMPLVPTSM 321 (332)
Q Consensus 246 ~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~k~~~~~~~giS~~~~H~~~Rs~Cln~F~~~fG~mPLv~S~~ 321 (332)
.++.-|.|.|++|++-+.-| ..+..+|.+....|.+.|| ||.....
T Consensus 16 ~dl~LyLDTHP~d~~Al~~y----------------------------~~~~~~~~~l~~~Ye~~yG--PLt~~~~ 61 (78)
T PF12652_consen 16 VDLNLYLDTHPDDQEALEYY----------------------------NEYSKQRKQLKKEYEKRYG--PLTNFGV 61 (78)
T ss_pred HHHHHHhcCCCCcHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhC--CCcCCCc
Confidence 35666788888887655444 1255788999999999999 6655443
No 68
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=26.07 E-value=87 Score=27.65 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=65.3
Q ss_pred ccccCC-CCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecc-----e-eccc-cCcc
Q 020041 150 FKEIKD-LKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCG-----W-WSVW-WTGT 221 (332)
Q Consensus 150 F~P~~~-i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~-----~-~~~~-~~~~ 221 (332)
-.-.+. .+.|-|+.+|+|+.++++-|+-.-.-...--.-+|--+|+.- +.. +.|.... + ..+. -...
T Consensus 23 ~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~---~~~--~~~~~l~~~~~~~~~~~~~a~~~ 97 (175)
T PF13506_consen 23 AQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGV---PAR--GFWSRLEAAFFNFLPGVLQALGG 97 (175)
T ss_pred HHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEeccccc---CCc--CHHHHHHHHHHhHHHHHHHHhcC
Confidence 334444 899999999999999999998766666552334665566632 111 1121110 0 0000 0134
Q ss_pred ccceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhh
Q 020041 222 YSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANV 270 (332)
Q Consensus 222 YSmVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~ 270 (332)
..++.-+...+.|.-|+..- .-.++.+++ |||.+|-=.+...
T Consensus 98 ~~~~~G~~m~~rr~~L~~~G--G~~~l~~~l-----adD~~l~~~~~~~ 139 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIG--GFEALADYL-----ADDYALGRRLRAR 139 (175)
T ss_pred CCceecceeeeEHHHHHHcc--cHHHHhhhh-----hHHHHHHHHHHHC
Confidence 56677777888888877542 233444444 9998887777665
No 69
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=22.78 E-value=5e+02 Score=27.26 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=55.9
Q ss_pred CCCCCeeEEEEeecCcHHHHHHHHH-HccCCCc-cEEEEEeCCCCCCC--chhHHHHHHhhhccCCCCcceeEEEeecCC
Q 020041 68 SPGKGYAILMNTWKRYDLLKQSIAH-YAKCPGL-DSIHLVWSEPDPPS--DSLQIFLQHIIRKNSRNGRQVELKFDINTE 143 (332)
Q Consensus 68 ~~~~~FTvvi~ty~R~~~L~~~l~~-~~~~p~l-~~IvVVWn~~~~Pp--~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ 143 (332)
.+...+||+|.+|+=.+.+.+.|++ +++..+= -+|+|+=. ++.+. +...++.. .. + . +++++.+.
T Consensus 63 ~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d-~ndd~T~~~v~~l~~-----~~--p-~--v~~vv~~~ 131 (504)
T PRK14716 63 VPEKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTY-PNDPATLREVDRLAA-----RY--P-R--VHLVIVPH 131 (504)
T ss_pred CCCCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEEC-CCChhHHHHHHHHHH-----HC--C-C--eEEEEeCC
Confidence 3467899999999866778888876 4555431 24555532 22222 22222111 11 1 1 22222221
Q ss_pred -------cccccccccc------CCCCCcEEEEecCCCCcChhHHHH
Q 020041 144 -------DSLNNRFKEI------KDLKADAVFSIDDDIIFPCHSVKF 177 (332)
Q Consensus 144 -------nsLnnRF~P~------~~i~T~AVLslDDDi~l~~~elef 177 (332)
+-||.=+.-. ...+.|.|+.+|=|..+.++.|..
T Consensus 132 ~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~ 178 (504)
T PRK14716 132 DGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRL 178 (504)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHH
Confidence 3466555332 123459999999999999999974
No 70
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=20.71 E-value=19 Score=32.07 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.4
Q ss_pred EecCCCCcChhHHHHHHHHHHhCCCCeeecCCcee
Q 020041 163 SIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKV 197 (332)
Q Consensus 163 slDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h 197 (332)
-+-||..+|++.+---|.+.-.+|...+|+.||+-
T Consensus 127 ~ild~tVlPpet~vppy~~~~g~p~~~~G~~P~ct 161 (184)
T KOG3121|consen 127 RILDDTVLPPETLVPPYSTIGGNPAQVVGTEPRCT 161 (184)
T ss_pred eccCCcccCcccccCCceEEcCCCceeeccCchhh
Confidence 36789999999998889999999999999999984
No 71
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=20.53 E-value=50 Score=34.10 Aligned_cols=105 Identities=13% Similarity=0.228 Sum_probs=44.7
Q ss_pred CCCCCeeEEEEeecCcHHHHHHHHHHccC-CCccE--EEEEeCCCCCCCc-hhHHHHHHhhhccCCCCcceeEEEeecCC
Q 020041 68 SPGKGYAILMNTWKRYDLLKQSIAHYAKC-PGLDS--IHLVWSEPDPPSD-SLQIFLQHIIRKNSRNGRQVELKFDINTE 143 (332)
Q Consensus 68 ~~~~~FTvvi~ty~R~~~L~~~l~~~~~~-p~l~~--IvVVWn~~~~Pp~-~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ 143 (332)
....---|+|.+++|++-|.+.|..+.+. |+-.+ |+|-=.+.+.... ....|...+.....++.. ++.+....+
T Consensus 90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~--~i~~~~~~~ 167 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFS--PITIPPKEK 167 (434)
T ss_dssp -------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S-------TT-G
T ss_pred cCCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhhhhheeeecCCcC--CceeCcccc
Confidence 34556778999999999888888876442 44333 5554444433221 111221111000001111 222221110
Q ss_pred c-------------cccccccccCCCCCcEEEEecCCCCcChhHHHH
Q 020041 144 D-------------SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKF 177 (332)
Q Consensus 144 n-------------sLnnRF~P~~~i~T~AVLslDDDi~l~~~elef 177 (332)
+ .|+.=|. ...-++|+.++||..+++|=+++
T Consensus 168 ~~~~y~~IA~HYk~aL~~vF~---~~~~~~vIIlEDDL~isPDFf~Y 211 (434)
T PF03071_consen 168 KFKGYYKIARHYKWALSQVFN---KFKYSSVIILEDDLEISPDFFEY 211 (434)
T ss_dssp GGHHHHHHHHHHHHHHHHHHH---TS--SEEEEEETTEEE-TTHHHH
T ss_pred cccchHHHHHHHHHHHHHHHH---hcCCceEEEEecCcccCccHHHH
Confidence 1 2334342 34567899999999999998887
No 72
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=20.04 E-value=1e+02 Score=24.95 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=19.6
Q ss_pred HHHHHHhccCCCchhHHHHHHHHh
Q 020041 246 TSIKEFVTENRNCEDIAMSFLVAN 269 (332)
Q Consensus 246 ~~ir~~VD~~~NCEDIaMNFlVa~ 269 (332)
..+..+|++...|+||+..+-...
T Consensus 23 ~gI~~Miee~~~C~dIl~Ql~Avr 46 (90)
T PRK15039 23 VALKKMLDEPHECAAVLQQIAAIR 46 (90)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH
Confidence 478899999999999998765543
Done!