Query 020041
Match_columns 332
No_of_seqs 146 out of 276
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1omz_A Alpha-1,4-N-acetylhexos 100.0 3.1E-87 1E-91 637.4 24.4 253 58-323 15-279 (293)
2 2ffu_A Ppgalnact-2, polypeptid 97.0 0.0068 2.3E-07 60.0 13.5 111 69-191 64-180 (501)
3 1qg8_A Protein (spore coat pol 97.0 0.0055 1.9E-07 54.0 11.6 180 72-270 2-200 (255)
4 1xhb_A Polypeptide N-acetylgal 96.6 0.0079 2.7E-07 58.9 9.5 118 67-191 25-148 (472)
5 3bcv_A Putative glycosyltransf 96.1 0.021 7.1E-07 49.7 8.8 115 71-194 5-121 (240)
6 2d7i_A Polypeptide N-acetylgal 95.5 0.017 5.8E-07 58.6 6.3 115 69-191 110-230 (570)
7 4fix_A UDP-galactofuranosyl tr 95.4 0.032 1.1E-06 58.1 8.1 113 69-191 178-303 (657)
8 4hg6_A Cellulose synthase subu 94.9 0.088 3E-06 55.8 9.9 119 70-195 139-277 (802)
9 2z86_A Chondroitin synthase; G 94.7 0.098 3.4E-06 52.8 9.3 108 71-188 93-205 (625)
10 2z86_A Chondroitin synthase; G 92.6 3.9 0.00013 41.0 16.8 177 71-270 375-558 (625)
11 3f1y_A Mannosyl-3-phosphoglyce 88.0 1.1 3.7E-05 43.4 7.5 184 70-274 93-296 (387)
12 3ckj_A Putative uncharacterize 83.8 2.3 7.8E-05 39.4 7.1 116 70-195 47-172 (329)
13 3l7i_A Teichoic acid biosynthe 79.6 0.37 1.3E-05 50.0 0.0 112 72-193 3-118 (729)
14 1fo8_A Alpha-1,3-mannosyl-glyc 73.7 5 0.00017 38.4 6.2 38 155-192 97-136 (343)
15 2nxv_A ATP synthase subunits r 65.1 24 0.00082 31.0 8.4 91 72-193 17-115 (249)
16 1pqs_A Cell division control p 42.6 15 0.0005 27.8 2.5 28 157-190 45-72 (77)
17 2fy7_A Beta-1,4-galactosyltran 39.0 33 0.0011 31.5 4.9 143 69-270 63-213 (287)
18 1q1o_A Cell division control p 33.8 25 0.00085 27.9 2.7 28 157-190 66-93 (98)
19 2j0a_A Beta-1,3-N-acetylglucos 22.1 1.3E+02 0.0044 27.3 5.7 113 157-278 93-209 (280)
20 2b3g_B Cellular tumor antigen 20.5 43 0.0015 20.2 1.3 11 166-176 9-19 (28)
No 1
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=100.00 E-value=3.1e-87 Score=637.39 Aligned_cols=253 Identities=32% Similarity=0.579 Sum_probs=211.6
Q ss_pred CCCCCCCCCCCCCCCeeEEEEeecCcHHHHHHHHHHccCCCccEEEEEeCCCCCCCch-hHHHHHHhhhccCCCCcceeE
Q 020041 58 TDSGPLDRSSSPGKGYAILMNTWKRYDLLKQSIAHYAKCPGLDSIHLVWSEPDPPSDS-LQIFLQHIIRKNSRNGRQVEL 136 (332)
Q Consensus 58 ~~~~~~~~~~~~~~~FTvvi~ty~R~~~L~~~l~~~~~~p~l~~IvVVWn~~~~Pp~~-l~~~~~~~~~~~~~~~~~vpv 136 (332)
..++...+...+.++|||||+||+|.++|+++|+||++||+|+||+||||++++||++ +|.- .++++|||
T Consensus 15 ~~~~~~~~g~~~~~~FTvvi~ty~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~---------~~~~~vpv 85 (293)
T 1omz_A 15 LRREIKSPSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNS---------LGPHPIPV 85 (293)
T ss_dssp -----------CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHH---------TCCCSSCE
T ss_pred HHHhcccCCCCCCCceEEEEEeecccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccc---------cCCCCccE
Confidence 3345556778889999999999999999999999999999999999999999755543 3321 14467899
Q ss_pred EEeecCCccccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceec-
Q 020041 137 KFDINTEDSLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWS- 215 (332)
Q Consensus 137 ~~~~~~~nsLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~- 215 (332)
+++.+++|||||||+|+++|+|||||++|||+.++|+||||||++||+||||||||+||+|.++. ++.|+|++++.
T Consensus 86 ~v~~~~~nsLnnRF~p~~~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~~R~H~~~~---~~~w~Y~~~~~~ 162 (293)
T 1omz_A 86 IFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTS---SGIYSYGGFELQ 162 (293)
T ss_dssp EEEECSSCCGGGGGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEEEEEEEE---TTEEEEECTTSC
T ss_pred EEEeCCCCchhhccCCCccCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCchhhhccCC---CCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999875 36799998653
Q ss_pred ---cccCccccceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhhCCCC-eEEec----eeccc--
Q 020041 216 ---VWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAPP-IWVKG----KIYEI-- 285 (332)
Q Consensus 216 ---~~~~~~YSmVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T~~pP-i~V~~----k~~~~-- 285 (332)
.+|+++||||||||||+||+|+++|+ ++|+++|+|||+++|||||||||||||+||+|| ++|++ +....
T Consensus 163 ~p~~~~~~~YSmVLTgaAF~Hr~Yl~lyt-~~p~~ir~~VDe~~NCEDIaMNFlVA~~T~~pP~i~vk~~~~~~~~~~~~ 241 (293)
T 1omz_A 163 TPGPGNGDQYSMVLIGASFFNSKYLELFQ-KQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETN 241 (293)
T ss_dssp CCSSSSSCCBSEECTTEEEEETHHHHHHH-TSCHHHHHHHHHHTCCHHHHHHHHHHHHHSSCSEEEECCSSEEECC----
T ss_pred ccccCCCCeEEEEECchHHhccHHHHHHH-HhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcceeccccccccccccc
Confidence 25789999999999999999999998 599999999999999999999999999999998 77764 11111
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHhCCCCCCCeeeEE
Q 020041 286 GSTGISTLGGHSEKRTQCLNRFAAEFGRMPLVPTSMKA 323 (332)
Q Consensus 286 ~~~giS~~~~H~~~Rs~Cln~F~~~fG~mPLv~S~~r~ 323 (332)
+..|||++++|+.+|++|||+|+++||+|||++|++|+
T Consensus 242 ~~~gis~~~~H~~~R~~Cln~f~~~fG~mPL~~s~~r~ 279 (293)
T 1omz_A 242 GYSGMWHRAEHFLQRSYCINKLVNIYDGMPLKYSNIMI 279 (293)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTSCCCCCBCEEE
T ss_pred cccCCCCCcchhHHHHHHHHHHHHHHCCCCCeeeEEee
Confidence 24699999999999999999999999999999999994
No 2
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=97.04 E-value=0.0068 Score=60.03 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred CCCCeeEEEEeecCcH-HHHHHHHHHcc-CC-C-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc
Q 020041 69 PGKGYAILMNTWKRYD-LLKQSIAHYAK-CP-G-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED 144 (332)
Q Consensus 69 ~~~~FTvvi~ty~R~~-~L~~~l~~~~~-~p-~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n 144 (332)
..-..+|||.+|++.. .|.+.|..+.. .+ . ..|||||=++...+. +...+. . ...|+++..++|
T Consensus 64 ~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t--~~~~~~-----~-----~~~v~vi~~~~n 131 (501)
T 2ffu_A 64 DLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPE--DGALLG-----K-----IEKVRVLRNDRR 131 (501)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTH--HHHGGG-----G-----BTTEEEEECSSC
T ss_pred CCCCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchH--HHHHHh-----c-----CCCEEEEECCCC
Confidence 3447999999999987 88888888643 32 2 248999876654332 211111 1 113566665554
Q ss_pred c--ccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeee
Q 020041 145 S--LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVG 191 (332)
Q Consensus 145 s--LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVG 191 (332)
. -..|-.-....++|.|+.+|+|..++++.|+-..+.++++|..+||
T Consensus 132 ~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~ 180 (501)
T 2ffu_A 132 EGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVS 180 (501)
T ss_dssp CHHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred cCHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEE
Confidence 2 2223333345689999999999999999999999999999998886
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=97.03 E-value=0.0055 Score=53.99 Aligned_cols=180 Identities=9% Similarity=0.053 Sum_probs=102.9
Q ss_pred CeeEEEEeecCcHHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecC--------
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINT-------- 142 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~-------- 142 (332)
+.||+|.||++.+.|.+.|..+.+... --||+||=++... ...+.+.... . ...|+++..+
T Consensus 2 ~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d---~t~~~~~~~~-----~--~~~i~~i~~~~~~~~~~~ 71 (255)
T 1qg8_A 2 KVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNE---ETLNVIRPFL-----N--DNRVRFYQSDISGVKERT 71 (255)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCH---HHHHHHGGGG-----G--STTEEEEECCCCSHHHHH
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCc---hHHHHHHHHh-----h--cCCEEEEecccccccccc
Confidence 579999999999999999999754332 2367777555432 1112222111 1 1245666555
Q ss_pred Ccc--ccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC-CeeecCCceeeeecCCCCcceeecce-ecccc
Q 020041 143 EDS--LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD-QMVGFVPRKVCVESKEGKDYYSYCGW-WSVWW 218 (332)
Q Consensus 143 ~ns--LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd-RlVGf~~R~h~~~~~~~~~~w~Y~~~-~~~~~ 218 (332)
+|. -.+|-.-....++|-|+.+|||..++++-|+...+..+++|+ -+||........+.. +...+.+... ....
T Consensus 72 ~n~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 149 (255)
T 1qg8_A 72 EKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNEN-RDIVKETVRPAAQVT- 149 (255)
T ss_dssp SSCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC----CEEEEEEECCCSCB-
T ss_pred cccCHHHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCC-CcchhhccCchHHHH-
Confidence 331 223333344568999999999999999999999999999876 355544333211322 1212222110 0000
Q ss_pred CccccceecceEeeehhhhhhhcccccHHHHHH------hccCCCchhHHHHHHHHhh
Q 020041 219 TGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEF------VTENRNCEDIAMSFLVANV 270 (332)
Q Consensus 219 ~~~YSmVLT~aAF~Hr~Yl~lYt~~~p~~ir~~------VD~~~NCEDIaMNFlVa~~ 270 (332)
......+.+.++++.|+.+...-- .+ -....-+||..+.+-+...
T Consensus 150 ~~~~~~~~~~~~~~rr~~~~~~g~-------~f~~~~~~~~~~~~~eD~~~~~r~~~~ 200 (255)
T 1qg8_A 150 WNAPCAIDHCSVMHRYSVLEKVKE-------KFGSYWDESPAFYRIGDARFFWRVNHF 200 (255)
T ss_dssp SCCTTTSCGGGEEEETHHHHHHHH-------HHSSSSCCCGGGSTTHHHHHHHHHTTT
T ss_pred HhhcCCCccceEEEEHHHHHhhcc-------cccccccCCcccchHHHHHHHHHHHHh
Confidence 122334556677788876553210 11 1124579999998887664
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=96.55 E-value=0.0079 Score=58.86 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=78.8
Q ss_pred CCCCCCeeEEEEeecCc-HHHHHHHHHHccC--CCc-cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecC
Q 020041 67 SSPGKGYAILMNTWKRY-DLLKQSIAHYAKC--PGL-DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINT 142 (332)
Q Consensus 67 ~~~~~~FTvvi~ty~R~-~~L~~~l~~~~~~--p~l-~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~ 142 (332)
+...-..||||.+|++. +.|.+.|+.+.+. +.+ .||+||=++...+. ..+.+..... . .+..|+++..+
T Consensus 25 ~~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~--t~~~l~~~~~-~----~~~~v~vi~~~ 97 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDF--LKRPLESYVK-K----LKVPVHVIRME 97 (472)
T ss_dssp CSCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGG--GTHHHHHHHH-S----SSSCEEEEECS
T ss_pred CcCCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHH--HHHHHHHHHH-H----CCCcEEEEECC
Confidence 33445799999999998 8999999987543 222 58999977655431 1122222111 0 11136777666
Q ss_pred Ccc--ccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeee
Q 020041 143 EDS--LNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVG 191 (332)
Q Consensus 143 ~ns--LnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVG 191 (332)
+|. -..|-.-....++|.|+.+|+|..++++.|+-..+..+++|+.+|+
T Consensus 98 ~n~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~ 148 (472)
T 1xhb_A 98 QRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVC 148 (472)
T ss_dssp SCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred CCCChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEE
Confidence 542 2222223345679999999999999999999999999999987765
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=96.12 E-value=0.021 Score=49.65 Aligned_cols=115 Identities=10% Similarity=-0.059 Sum_probs=70.5
Q ss_pred CCeeEEEEeecCcHHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc-ccc
Q 020041 71 KGYAILMNTWKRYDLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS-LNN 148 (332)
Q Consensus 71 ~~FTvvi~ty~R~~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns-Lnn 148 (332)
-+.||+|.||++.+.|.+.|+.+.+-.. --||+||=++...... +.+.....+ . ..|+++..+... -.+
T Consensus 5 p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~---~~~~~~~~~---~---~~i~~i~~~n~G~~~a 75 (240)
T 3bcv_A 5 PKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCP---KICDDYAAQ---Y---PNIKVIHKKNAGLGMA 75 (240)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHH---HHHHHHHHH---C---SSEEEEECCCCCHHHH
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHH---HHHHHHHhh---C---CCEEEEECCCCChHHH
Confidence 3689999999999999999998754322 2478887665533221 222221110 0 124544332211 112
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCC
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVP 194 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~ 194 (332)
|=.-....++|-|+.+|||..+.++-|+...+..++....+|....
T Consensus 76 ~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~~ 121 (240)
T 3bcv_A 76 CNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGL 121 (240)
T ss_dssp HHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC--
T ss_pred HHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEee
Confidence 2223345688999999999999999999999998874434554433
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=95.47 E-value=0.017 Score=58.59 Aligned_cols=115 Identities=13% Similarity=0.061 Sum_probs=77.5
Q ss_pred CCCCeeEEEEeecCc-HHHHHHHHHHcc-C-CCc-cEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc
Q 020041 69 PGKGYAILMNTWKRY-DLLKQSIAHYAK-C-PGL-DSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED 144 (332)
Q Consensus 69 ~~~~FTvvi~ty~R~-~~L~~~l~~~~~-~-p~l-~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n 144 (332)
..-..+|||.+|++. +.|.+.|..+.. . +.+ .|||||=++...+. +.+.+..... . . ..|+++..++|
T Consensus 110 ~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~t--l~~~l~~~~~-~----~-~~v~vi~~~~n 181 (570)
T 2d7i_A 110 TLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREH--LKKPLEDYMA-L----F-PSVRILRTKKR 181 (570)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGG--GTHHHHHHHT-T----S-TTEEEEECSSC
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHH--HHHHHHHHHH-h----C-CeEEEEECCCC
Confidence 345799999999997 888899888643 2 232 48999977655433 1122222211 0 1 13566666544
Q ss_pred --cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeee
Q 020041 145 --SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVG 191 (332)
Q Consensus 145 --sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVG 191 (332)
.-..|-.-....++|-|+.+|+|+.+.++-|+-..+..+++|+.+||
T Consensus 182 ~G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~ 230 (570)
T 2d7i_A 182 EGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVC 230 (570)
T ss_dssp CCHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEe
Confidence 12223333345688999999999999999999999999999988776
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=95.39 E-value=0.032 Score=58.07 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=76.2
Q ss_pred CCCCeeEEEEeecCcHHHHHHHHHHccCC----CccEEEEEeCCCCCCC--chhHHHHHHhhhccCCCCcceeEEEeecC
Q 020041 69 PGKGYAILMNTWKRYDLLKQSIAHYAKCP----GLDSIHLVWSEPDPPS--DSLQIFLQHIIRKNSRNGRQVELKFDINT 142 (332)
Q Consensus 69 ~~~~FTvvi~ty~R~~~L~~~l~~~~~~p----~l~~IvVVWn~~~~Pp--~~l~~~~~~~~~~~~~~~~~vpv~~~~~~ 142 (332)
.+-+.+|||.||+|.+.|.+.|..+.+.. ...+|+||=|+...+. +.+.+..... ...|+++.++
T Consensus 178 ~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~---------~~~I~vI~~~ 248 (657)
T 4fix_A 178 GTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARL---------GSRLSIHDQP 248 (657)
T ss_dssp SCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHH---------GGGEEEEECC
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhc---------CCCEEEEECC
Confidence 35689999999999999999999987654 4569999988765432 2222222111 1245665554
Q ss_pred Ccc-c---cccccc-c-CCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCC-Ceee
Q 020041 143 EDS-L---NNRFKE-I-KDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPD-QMVG 191 (332)
Q Consensus 143 ~ns-L---nnRF~P-~-~~i~T~AVLslDDDi~l~~~elefaF~vWr~~Pd-RlVG 191 (332)
|. . +|+=.- - .+..+|-|+.+|||+.+.++.|+...+..+++|+ -+||
T Consensus 249 -N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg 303 (657)
T 4fix_A 249 -NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVG 303 (657)
T ss_dssp -CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEE
T ss_pred -CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEE
Confidence 41 1 122110 0 1125789999999999999999999999999876 3666
No 8
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=94.91 E-value=0.088 Score=55.76 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred CCCeeEEEEeecCcH-HHHHHHHHHccCCCc---cEEEEEeCCCCCCC-----chh-------HHHHHHhhhccCCCCcc
Q 020041 70 GKGYAILMNTWKRYD-LLKQSIAHYAKCPGL---DSIHLVWSEPDPPS-----DSL-------QIFLQHIIRKNSRNGRQ 133 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~-~L~~~l~~~~~~p~l---~~IvVVWn~~~~Pp-----~~l-------~~~~~~~~~~~~~~~~~ 133 (332)
..+.+|+|.||+..+ +|.+.|+...+..+- -||+||=++..... ++. .+....... .
T Consensus 139 ~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~-------~ 211 (802)
T 4hg6_A 139 LPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCR-------E 211 (802)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHH-------H
T ss_pred CCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHH-------h
Confidence 347999999999875 568899988554433 37888865432111 111 000111000 1
Q ss_pred eeEEEeecCCc---cccccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC-eeecCCc
Q 020041 134 VELKFDINTED---SLNNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ-MVGFVPR 195 (332)
Q Consensus 134 vpv~~~~~~~n---sLnnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR-lVGf~~R 195 (332)
.++++...++| .-.|+-.-....+.|-|+.+|+|..++++.|+.....-.++|+- +|+...+
T Consensus 212 ~~v~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~ 277 (802)
T 4hg6_A 212 LGVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHF 277 (802)
T ss_dssp HTCEEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCC
T ss_pred cCcEEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEE
Confidence 13344443333 12222223345688999999999999999999999988888863 5554433
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=94.71 E-value=0.098 Score=52.83 Aligned_cols=108 Identities=12% Similarity=0.093 Sum_probs=72.4
Q ss_pred CCeeEEEEeecCcHHHHHHHHHHccC--CCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCccc--
Q 020041 71 KGYAILMNTWKRYDLLKQSIAHYAKC--PGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSL-- 146 (332)
Q Consensus 71 ~~FTvvi~ty~R~~~L~~~l~~~~~~--p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsL-- 146 (332)
.+.+|+|.||++.+.|.+.|+.+... +.-.+|+||=++...... +.+.. ... ..+++++..+.+..
T Consensus 93 p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~---~~~~~-----~~~--~~~i~~i~~~~~~~g~ 162 (625)
T 2z86_A 93 DGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIE---EIVRE-----FES--LLNIKYVRQKDYGYQL 162 (625)
T ss_dssp CCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHH---HHHHT-----TTT--TSCEEEEEECCCSCCH
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHH---HHHHH-----hhh--cCCeEEEEeCCCCcch
Confidence 36899999999999999999998544 345688888766543321 22221 111 12455555443221
Q ss_pred -cccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC
Q 020041 147 -NNRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ 188 (332)
Q Consensus 147 -nnRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR 188 (332)
.+|-.-....++|-|+.+|+|..++++.|+.......++|+-
T Consensus 163 ~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~ 205 (625)
T 2z86_A 163 CAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNV 205 (625)
T ss_dssp HHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTE
T ss_pred hHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCce
Confidence 122223345689999999999999999999998888888864
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.64 E-value=3.9 Score=40.97 Aligned_cols=177 Identities=13% Similarity=0.105 Sum_probs=95.9
Q ss_pred CCeeEEEEeecCcHHHHHHHHHHccCCC-ccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCcc-ccc
Q 020041 71 KGYAILMNTWKRYDLLKQSIAHYAKCPG-LDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDS-LNN 148 (332)
Q Consensus 71 ~~FTvvi~ty~R~~~L~~~l~~~~~~p~-l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~ns-Lnn 148 (332)
...||+|.||++.+.|.+.|..+.+-.. --||+||=++..... .+.+..... ... .++++.++... -.+
T Consensus 375 ~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t---~~~~~~~~~----~~~--~i~~~~~~n~G~~~a 445 (625)
T 2z86_A 375 PLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDT---LRILQEHYA----NHP--RVRFISQKNKGIGSA 445 (625)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSH---HHHHHHHHT----TCT--TEEEEEECCCCHHHH
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhH---HHHHHHHHh----hCC--cEEEEeCCCCCHHHH
Confidence 4799999999999999999998743322 237777754443221 122222110 111 24444322111 111
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCC-eeecCCceeeeecCCCCcceeecceeccccC---ccccc
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQ-MVGFVPRKVCVESKEGKDYYSYCGWWSVWWT---GTYSM 224 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdR-lVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~---~~YSm 224 (332)
|=.-....++|-|+.+|+|..+.++.|+-..+...++|+- +|+...+ ..+.. + .+...+.....+. -...+
T Consensus 446 ~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~--~~~~~-~--~~~~~~~~~~~~~~~~~~~~~ 520 (625)
T 2z86_A 446 SNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNR--NIDRE-G--NLISNGYNWPIYSREKLTSAM 520 (625)
T ss_dssp HHHHHHHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEEEEE--EECTT-S--CEEEECCCCSSCCHHHHTTSC
T ss_pred HHHHHHhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEeeeE--EECCC-C--CEeccCcccccCCHHHHhhcc
Confidence 1122234578999999999999999999999889888863 3332222 22322 1 1211110000000 11234
Q ss_pred eecceEeeehhhhhhhcccccHHHHHHhcc-CCCchhHHHHHHHHhh
Q 020041 225 VLSKASFFHKKYLRLYTNEMPTSIKEFVTE-NRNCEDIAMSFLVANV 270 (332)
Q Consensus 225 VLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~-~~NCEDIaMNFlVa~~ 270 (332)
+...++++.+.-++..-. -|+ ...|||.-|.+-++..
T Consensus 521 ~~~~~~~~~r~~~~~~gg---------fd~~~~~~eD~dl~~r~~~~ 558 (625)
T 2z86_A 521 ICHHFRMFTARAWNLTEG---------FNESISNAVDYDMYLKLSEV 558 (625)
T ss_dssp CCCSCEEEEHHHHTTTTC---------CCSSCSSCHHHHHHHHHTTT
T ss_pred cCCceEEEEHHHHHHhCC---------CCCccCChHHHHHHHHHHHh
Confidence 445566777765443211 133 3579999998776653
No 11
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=88.02 E-value=1.1 Score=43.43 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=98.6
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHH----ccCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCccee---EEEeecC
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHY----AKCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVE---LKFDINT 142 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~----~~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vp---v~~~~~~ 142 (332)
.-+.+|||.||+..+.|.+.|..+ ++.+.-.+|+||=++...... +.+... .. .+. +++...+
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~---~i~~~~------~~-~v~~~~~~~i~~~ 162 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTA---GVAASH------GA-EVYSENELMSGYG 162 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHH---HHHHHT------TC-EEEEGGGTTGGGC
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHH---HHHHHh------Cc-hhcccceeEecCC
Confidence 457999999999877777766665 345556799999876543322 121111 00 100 0011111
Q ss_pred Cc--cccccccccCCCCCcEEEEecCCCC-cChhHHHHHHHHHHhCC--CCeeecCCceeeeec----CCCC--cceeec
Q 020041 143 ED--SLNNRFKEIKDLKADAVFSIDDDII-FPCHSVKFAFDVWRSAP--DQMVGFVPRKVCVES----KEGK--DYYSYC 211 (332)
Q Consensus 143 ~n--sLnnRF~P~~~i~T~AVLslDDDi~-l~~~elefaF~vWr~~P--dRlVGf~~R~h~~~~----~~~~--~~w~Y~ 211 (332)
.| .-.++-.-....+.|.|+.+|.|.. ++++.|+.......++| +-+.|.+.|...... ..+. ..|.+.
T Consensus 163 ~n~G~g~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~~~~~~~~~~~~g~v~~~~~~ 242 (387)
T 3f1y_A 163 DAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFRKGESIEEDGGGRVTELTAK 242 (387)
T ss_dssp SCCSHHHHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC-------CCBCCSHHHHHTHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeeccccccccccccccCCchhhhhHH
Confidence 12 1111122233457899999999999 89999999998888876 446666544321000 0000 000000
Q ss_pred ceec--cccCccccceecceEeeehhhhhhhcccccHHHHHHhccCCCchhHHHHHHHHhhhCCC
Q 020041 212 GWWS--VWWTGTYSMVLSKASFFHKKYLRLYTNEMPTSIKEFVTENRNCEDIAMSFLVANVTDAP 274 (332)
Q Consensus 212 ~~~~--~~~~~~YSmVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~NCEDIaMNFlVa~~T~~p 274 (332)
..-. ........-.++|...+.|+.++.. .+ + ..=++|+-|-.-+....|..
T Consensus 243 ~l~~~~~~~l~~~~d~~sG~~a~rR~~l~~i--~f--------~-~gyg~e~ell~~~~~~~G~~ 296 (387)
T 3f1y_A 243 PLFNLFYPELAGFVQPLAGEFVADRELFCSI--PF--------L-TGYAVETGIMIDVLKKVGLG 296 (387)
T ss_dssp HHHHHHCGGGTTCSCTTCSCEEEEHHHHTTS--CE--------E-CSTTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhHhhccccccccccEEEEHHHHHhC--CC--------C-CCcchHHHHHHHHHHhcCCC
Confidence 0000 0000123344678888888888765 12 2 23467787777665554543
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=83.76 E-value=2.3 Score=39.45 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=70.2
Q ss_pred CCCeeEEEEeecCcHHHHHHHHHHccC--CCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcce-e-EEEee-cCCc
Q 020041 70 GKGYAILMNTWKRYDLLKQSIAHYAKC--PGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQV-E-LKFDI-NTED 144 (332)
Q Consensus 70 ~~~FTvvi~ty~R~~~L~~~l~~~~~~--p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~v-p-v~~~~-~~~n 144 (332)
..+.+|||.+|++.+.|.+.|..+.+. +...||+||=++...... +.+... .. .+ + +++.. .+.|
T Consensus 47 ~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~---~~~~~~------~~-~~~~~~~~~~~~~~n 116 (329)
T 3ckj_A 47 GRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTE---IRAVAA------GA-RVVSREQALPEVPIR 116 (329)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHH---HHHHHT------TC-EEEEHHHHCTTSCCC
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHH---HHHHHh------hh-hhccceeeeccCCCC
Confidence 457999999999988999999987543 445689888655432211 222111 00 10 0 11110 2222
Q ss_pred --cccccccccCCCCCcEEEEecCCCC-cChhHHHHHHHHHHhCCC--CeeecCCc
Q 020041 145 --SLNNRFKEIKDLKADAVFSIDDDII-FPCHSVKFAFDVWRSAPD--QMVGFVPR 195 (332)
Q Consensus 145 --sLnnRF~P~~~i~T~AVLslDDDi~-l~~~elefaF~vWr~~Pd--RlVGf~~R 195 (332)
.-.++-.-....++|.|+.+|+|.. ++++.|+...+...++|+ -+.|.+.+
T Consensus 117 ~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~~ 172 (329)
T 3ckj_A 117 PGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRR 172 (329)
T ss_dssp CSHHHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEEC
T ss_pred CCHHHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEecc
Confidence 1111212223457899999999998 899999988888777774 34564433
No 13
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=79.65 E-value=0.37 Score=50.01 Aligned_cols=112 Identities=9% Similarity=0.155 Sum_probs=0.0
Q ss_pred CeeEEEEeecCcHHHHHHHHHHccCC-CccEEEEEeCCCCCCCc-hhHHHHHHhhhccCCCCcceeEEEeecCCc--ccc
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAKCP-GLDSIHLVWSEPDPPSD-SLQIFLQHIIRKNSRNGRQVELKFDINTED--SLN 147 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~~p-~l~~IvVVWn~~~~Pp~-~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n--sLn 147 (332)
++||||.||++.+.|.+.|..+.+-. .--||+||=++...... -+.++. ......|+++..++| .-.
T Consensus 3 ~vSVIIp~yN~~~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~---------~~~~~~i~~i~~~~n~G~~~ 73 (729)
T 3l7i_A 3 KLTIIVTYYNAEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAI---------KDYDKNIRFIDLDENSGHAH 73 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHH---------HhCCCCEEEEECCCCCCHHH
Confidence 57999999999999999998864322 12377777665432221 111111 111123455544433 123
Q ss_pred ccccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecC
Q 020041 148 NRFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFV 193 (332)
Q Consensus 148 nRF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~ 193 (332)
+|=.-....++|-|+.+|+|..+.++-|+...+... .++-++|..
T Consensus 74 arN~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~d~v~~~~ 118 (729)
T 3l7i_A 74 ARNIALEEVETPYFMFLDADDELASYAITFYLEKFN-NTDGLIAPI 118 (729)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHhccCCEEEEECCCCCCChhHHHHHHHHhc-CCCEEEEee
Confidence 333445567899999999999999999998888777 666555543
No 14
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=73.73 E-value=5 Score=38.36 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=29.2
Q ss_pred CCCCcEEEEecCCCCcChhHHHHHHHHHH--hCCCCeeec
Q 020041 155 DLKADAVFSIDDDIIFPCHSVKFAFDVWR--SAPDQMVGF 192 (332)
Q Consensus 155 ~i~T~AVLslDDDi~l~~~elefaF~vWr--~~PdRlVGf 192 (332)
..+.+.|+.+|||..++++=++|--++.. +..++|.+.
T Consensus 97 ~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~I 136 (343)
T 1fo8_A 97 NFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCV 136 (343)
T ss_dssp TSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEE
T ss_pred hccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEE
Confidence 34689999999999999999988777665 445566544
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=65.06 E-value=24 Score=30.98 Aligned_cols=91 Identities=8% Similarity=0.061 Sum_probs=56.0
Q ss_pred CeeEEEEeecCcHHHHHHHHHHcc-C--CCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCccccc
Q 020041 72 GYAILMNTWKRYDLLKQSIAHYAK-C--PGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTEDSLNN 148 (332)
Q Consensus 72 ~FTvvi~ty~R~~~L~~~l~~~~~-~--p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~nsLnn 148 (332)
.++| |.+|++.+.|.+.|+++.+ . +.-.||+||=|+...-. ... .-+|
T Consensus 17 ~iSI-I~~yN~~~~l~~~l~sl~~sl~~q~~~EiIVVDn~s~d~~-g~a---------------------------~a~N 67 (249)
T 2nxv_A 17 MFSV-CSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQF-HGF---------------------------SWHK 67 (249)
T ss_dssp SEEE-EEEESCHHHHHHHHHHHHHTTCCTTTEEEEEEECTTSCSC-CTT---------------------------THHH
T ss_pred eEEE-EEeeCCHHHHHHHHHHHHHhccCCCcEEEEEEECCCCCcc-cHH---------------------------HHHH
Confidence 5676 4579998999999986642 1 22268988855432200 000 0011
Q ss_pred cccccCCCCCcEEEEecCCCCcChhHHHHHHHHHHh----CCC-CeeecC
Q 020041 149 RFKEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRS----APD-QMVGFV 193 (332)
Q Consensus 149 RF~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~----~Pd-RlVGf~ 193 (332)
+ -...-+.|-|+.+|+|+.++++-|+-..+.-++ +|+ -+||..
T Consensus 68 ~--Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~~~~~~~~vg~vg~~ 115 (249)
T 2nxv_A 68 Q--MLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVA 115 (249)
T ss_dssp H--HGGGCCSSEEEEEETTEECSSCCHHHHHHHHHHHHHHCTTEEEEESE
T ss_pred H--HHHhcCCCEEEEECCCcccCccHHHHHHHHHHhcccCCCCeeEEeec
Confidence 1 011235799999999999998888777666666 476 356643
No 16
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=42.59 E-value=15 Score=27.81 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCcChhHHHHHHHHHHhCCCCee
Q 020041 157 KADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMV 190 (332)
Q Consensus 157 ~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlV 190 (332)
..|-|-..||| |++.|++.|++...|++
T Consensus 45 dGD~Vti~sdd------Dl~~A~~~~~~~~~~~l 72 (77)
T 1pqs_A 45 DGDFVVLGSDE------DWNVAKEMLAENNEKFL 72 (77)
T ss_dssp TTEEEECCSTT------HHHHHHHHHHHHCCCEE
T ss_pred CCCEEEEcCHH------HHHHHHHHHHhhhcCeE
Confidence 56777777776 99999999999865543
No 17
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=39.04 E-value=33 Score=31.46 Aligned_cols=143 Identities=17% Similarity=0.087 Sum_probs=78.6
Q ss_pred CCCCeeEEEEeecCcHHHHHHHHHHc----cCCCccEEEEEeCCCCCCCchhHHHHHHhhhccCCCCcceeEEEeecCCc
Q 020041 69 PGKGYAILMNTWKRYDLLKQSIAHYA----KCPGLDSIHLVWSEPDPPSDSLQIFLQHIIRKNSRNGRQVELKFDINTED 144 (332)
Q Consensus 69 ~~~~FTvvi~ty~R~~~L~~~l~~~~----~~p~l~~IvVVWn~~~~Pp~~l~~~~~~~~~~~~~~~~~vpv~~~~~~~n 144 (332)
+..+.+|||.||+|.+.|.+.|.++. +...--||+||=+..+.+-. .. .
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d~~f~-~a--------------------------~ 115 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFN-RA--------------------------K 115 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSCCC-HH--------------------------H
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCCccc-hh--------------------------h
Confidence 35689999999999999999988875 22223478888663322110 00 0
Q ss_pred cccccc-cccCCCCCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceeccccCcccc
Q 020041 145 SLNNRF-KEIKDLKADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYS 223 (332)
Q Consensus 145 sLnnRF-~P~~~i~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YS 223 (332)
.+|.=+ .-...-+.|-|+.+|+|..+..+.+.+ ..|-.|+ |. .. ....+.| ...|.
T Consensus 116 a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~~-----------~~~~~p~-~~-~~--~~~~~~~--------~~~~~ 172 (287)
T 2fy7_A 116 LLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAY-----------RCFSQPR-HI-SV--AMDKFGF--------SLPYV 172 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCC-----------SCCSSCE-EC-CC--EEGGGTT--------SCSST
T ss_pred hhhhHHHHHHHhCCCCEEEEECCCcccCCCcceE-----------ecCCCCc-eE-EE--eeccccc--------CCCcC
Confidence 111111 000234679999999999988874211 1121222 11 00 0001122 12455
Q ss_pred ceecceEeeehhhhhhhcccccHHHHHHhccCC---CchhHHHHHHHHhh
Q 020041 224 MVLSKASFFHKKYLRLYTNEMPTSIKEFVTENR---NCEDIAMSFLVANV 270 (332)
Q Consensus 224 mVLT~aAF~Hr~Yl~lYt~~~p~~ir~~VD~~~---NCEDIaMNFlVa~~ 270 (332)
.+..+..++.|+-+..--- -|+.+ -+||+-|-+=+...
T Consensus 173 ~~~G~~~~~rr~~f~~vgG---------Fde~~~g~g~ED~Dl~~Rl~~~ 213 (287)
T 2fy7_A 173 QYFGGVSALSKQQFLTING---------FPNNYWGWGGEDDDIFNRLVFR 213 (287)
T ss_dssp TCCCSEEEEEHHHHHHTTS---------CCSCCSSCSCHHHHHHHHHHHT
T ss_pred ceeeeEEEEEHHHHHHcCC---------CCccccccccchHHHHHHHHHc
Confidence 5666777777765443321 14443 36999998877664
No 18
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=33.81 E-value=25 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=20.3
Q ss_pred CCcEEEEecCCCCcChhHHHHHHHHHHhCCCCee
Q 020041 157 KADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMV 190 (332)
Q Consensus 157 ~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlV 190 (332)
..|-|-..|| +|++.|++.|++...|++
T Consensus 66 dGD~Vtl~sd------dDl~~A~e~~~e~~~~~l 93 (98)
T 1q1o_A 66 DGDFVVLGSD------EDWNVAKEMLAENNEKFL 93 (98)
T ss_dssp SSCEEEECSH------HHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEcCH------HHHHHHHHHHHhhhcCeE
Confidence 3455555555 499999999999876553
No 19
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=22.05 E-value=1.3e+02 Score=27.30 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=52.5
Q ss_pred CCcEEEEecCCCCcChhHHHHHHHHHHhCCCCeeecCCceeeeecCCCCcceeecceeccccCccccceecce-Eeeehh
Q 020041 157 KADAVFSIDDDIIFPCHSVKFAFDVWRSAPDQMVGFVPRKVCVESKEGKDYYSYCGWWSVWWTGTYSMVLSKA-SFFHKK 235 (332)
Q Consensus 157 ~T~AVLslDDDi~l~~~elefaF~vWr~~PdRlVGf~~R~h~~~~~~~~~~w~Y~~~~~~~~~~~YSmVLT~a-AF~Hr~ 235 (332)
..+-.+..|||+.+..+.|..-.+--....+-.+|..-..+-.........+.+ ....|.+.-.|| -++.+.
T Consensus 93 ~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~~~~~~~~~~-------~~~~~~y~~GGaG~vlSr~ 165 (280)
T 2j0a_A 93 GLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRT-------KLVRFWFATGGAGFCINRQ 165 (280)
T ss_dssp TCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC--------------------------CCEECGGGCEEEEHH
T ss_pred CCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccccccCccccc-------cccccCcccCCCEEEECHH
Confidence 678899999999999998876543221112335565432221100000000000 011344554443 444554
Q ss_pred hhhhhcccccHHHHHHhc---cCCCchhHHHHHHHHhhhCCCCeEE
Q 020041 236 YLRLYTNEMPTSIKEFVT---ENRNCEDIAMSFLVANVTDAPPIWV 278 (332)
Q Consensus 236 Yl~lYt~~~p~~ir~~VD---~~~NCEDIaMNFlVa~~T~~pPi~V 278 (332)
-+......... -++++ ...-.||..|=+.+.+..|-+|..-
T Consensus 166 ~l~~l~~~~~~--~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~ 209 (280)
T 2j0a_A 166 LALKMVPWASG--SHFVDTSALIRLPDDCTVGYIIECKLGGRLQPS 209 (280)
T ss_dssp HHHHHHHHHTT--CTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHhhcc--cccccccccCCCCccHHHHHHHHhcCCCCceec
Confidence 33322210000 00000 1122369999999987888887764
No 20
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=20.46 E-value=43 Score=20.25 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=10.3
Q ss_pred CCCCcChhHHH
Q 020041 166 DDIIFPCHSVK 176 (332)
Q Consensus 166 DDi~l~~~ele 176 (332)
||.+++++|||
T Consensus 9 ddlmlspddi~ 19 (28)
T 2b3g_B 9 DDLMLSPDDIE 19 (28)
T ss_dssp GGGGCCHHHHH
T ss_pred HhhhcChHHHH
Confidence 78999999999
Done!