Query 020045
Match_columns 332
No_of_seqs 138 out of 1283
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 5.9E-77 1.3E-81 553.1 30.4 327 6-332 49-375 (375)
2 PTZ00281 actin; Provisional 100.0 1.1E-75 2.4E-80 545.9 29.9 329 4-332 48-376 (376)
3 PTZ00466 actin-like protein; P 100.0 2.3E-75 4.9E-80 543.0 31.0 327 4-332 54-380 (380)
4 KOG0676 Actin and related prot 100.0 1.2E-76 2.6E-81 534.5 21.1 327 1-332 46-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 5.6E-74 1.2E-78 535.2 29.6 330 3-332 47-378 (378)
6 PTZ00280 Actin-related protein 100.0 7.7E-69 1.7E-73 506.6 30.7 325 6-330 51-408 (414)
7 smart00268 ACTIN Actin. ACTIN 100.0 3E-68 6.5E-73 497.8 29.6 326 7-332 45-373 (373)
8 PF00022 Actin: Actin; InterP 100.0 2.6E-68 5.6E-73 501.8 25.4 324 8-332 45-393 (393)
9 cd00012 ACTIN Actin; An ubiqui 100.0 1.9E-65 4.1E-70 478.4 29.9 326 5-330 42-371 (371)
10 KOG0679 Actin-related protein 100.0 3.8E-66 8.3E-71 453.9 22.7 322 6-331 54-425 (426)
11 KOG0677 Actin-related protein 100.0 1.4E-65 3E-70 429.2 18.0 326 5-330 49-386 (389)
12 COG5277 Actin and related prot 100.0 4.3E-61 9.2E-66 448.9 25.4 331 2-332 47-444 (444)
13 KOG0680 Actin-related protein 100.0 7E-60 1.5E-64 405.2 22.2 327 4-332 37-399 (400)
14 KOG0681 Actin-related protein 100.0 6E-48 1.3E-52 351.4 20.3 320 10-330 67-638 (645)
15 KOG0678 Actin-related protein 100.0 3E-48 6.5E-53 334.0 11.9 325 4-329 54-407 (415)
16 KOG0797 Actin-related protein 100.0 7.4E-40 1.6E-44 296.6 17.6 313 20-332 177-615 (618)
17 TIGR00904 mreB cell shape dete 100.0 7.1E-34 1.5E-38 261.6 13.8 272 7-305 43-326 (333)
18 PRK13930 rod shape-determining 100.0 1.1E-33 2.5E-38 260.8 13.8 274 6-306 44-328 (335)
19 PRK13929 rod-share determining 100.0 7.8E-33 1.7E-37 254.4 13.6 267 8-303 42-323 (335)
20 PRK13927 rod shape-determining 100.0 6.4E-32 1.4E-36 248.9 14.3 271 7-306 42-324 (334)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 4.8E-30 1E-34 231.4 16.5 270 6-305 37-320 (326)
22 PRK13928 rod shape-determining 100.0 5.7E-29 1.2E-33 229.2 15.1 272 7-305 40-322 (336)
23 COG1077 MreB Actin-like ATPase 99.9 2.3E-24 5E-29 188.0 10.4 271 7-304 45-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.8 2E-20 4.3E-25 163.7 14.3 210 23-302 26-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 1.4E-17 2.9E-22 148.3 15.1 213 22-304 52-267 (267)
26 CHL00094 dnaK heat shock prote 99.6 4.3E-14 9.3E-19 140.2 14.5 233 36-306 113-376 (621)
27 PRK01433 hscA chaperone protei 99.6 6.4E-14 1.4E-18 137.6 14.5 224 37-306 120-356 (595)
28 TIGR01991 HscA Fe-S protein as 99.5 1.1E-13 2.5E-18 136.4 13.9 234 37-306 108-360 (599)
29 PLN03184 chloroplast Hsp70; Pr 99.5 1.9E-13 4.1E-18 136.3 15.1 233 36-306 150-413 (673)
30 PTZ00400 DnaK-type molecular c 99.5 1.5E-13 3.2E-18 137.0 14.3 214 57-306 174-415 (663)
31 PRK09472 ftsA cell division pr 99.5 2.6E-13 5.6E-18 128.6 15.3 201 70-306 165-388 (420)
32 PRK00290 dnaK molecular chaper 99.5 1.2E-13 2.5E-18 137.4 13.3 215 57-306 133-374 (627)
33 PRK05183 hscA chaperone protei 99.5 1.4E-13 3.1E-18 136.1 12.8 231 37-306 128-376 (616)
34 TIGR02350 prok_dnaK chaperone 99.5 1.8E-13 4E-18 135.4 13.1 214 58-306 131-372 (595)
35 PTZ00186 heat shock 70 kDa pre 99.5 1.4E-13 2.9E-18 136.5 11.9 218 57-306 160-401 (657)
36 PRK13410 molecular chaperone D 99.5 2.5E-13 5.5E-18 135.0 13.7 213 58-306 136-376 (668)
37 PRK13411 molecular chaperone D 99.5 2.4E-13 5.1E-18 135.4 13.4 220 57-306 133-376 (653)
38 TIGR01174 ftsA cell division p 99.4 5E-13 1.1E-17 125.0 10.6 182 69-289 156-347 (371)
39 PTZ00009 heat shock 70 kDa pro 99.4 1.2E-12 2.6E-17 130.4 13.5 215 57-306 140-381 (653)
40 COG0849 ftsA Cell division ATP 99.4 3.9E-12 8.5E-17 118.3 14.1 200 69-306 163-380 (418)
41 PRK11678 putative chaperone; P 99.4 7.1E-12 1.5E-16 119.1 15.9 139 5-147 82-260 (450)
42 PF00012 HSP70: Hsp70 protein; 99.3 2.8E-12 6E-17 127.6 9.7 215 58-306 136-376 (602)
43 COG0443 DnaK Molecular chapero 99.2 1.3E-10 2.8E-15 113.8 14.5 142 8-152 51-222 (579)
44 PRK13917 plasmid segregation p 99.1 3.2E-09 6.9E-14 98.0 14.4 245 9-306 62-336 (344)
45 COG4820 EutJ Ethanolamine util 99.0 9.2E-11 2E-15 96.1 1.3 189 23-274 58-250 (277)
46 TIGR03739 PRTRC_D PRTRC system 99.0 6.5E-09 1.4E-13 95.2 13.5 146 4-153 53-215 (320)
47 TIGR01175 pilM type IV pilus a 99.0 3.8E-09 8.1E-14 98.1 11.4 155 69-275 141-307 (348)
48 KOG0100 Molecular chaperones G 98.9 3.1E-08 6.7E-13 89.5 12.5 214 58-306 173-411 (663)
49 PF11104 PilM_2: Type IV pilus 98.8 5E-08 1.1E-12 90.2 11.6 163 69-289 134-307 (340)
50 KOG0101 Molecular chaperones H 98.6 3.1E-07 6.8E-12 88.7 11.7 215 58-307 144-384 (620)
51 COG4972 PilM Tfp pilus assembl 98.5 1.2E-06 2.5E-11 77.8 11.7 118 107-275 195-312 (354)
52 KOG0104 Molecular chaperones G 98.4 2.9E-06 6.3E-11 82.3 10.7 94 58-152 159-275 (902)
53 KOG0103 Molecular chaperones H 98.3 7.1E-06 1.5E-10 79.2 11.2 96 56-152 136-246 (727)
54 PF06406 StbA: StbA protein; 98.1 6.8E-06 1.5E-10 75.2 6.0 110 42-152 81-212 (318)
55 KOG0102 Molecular chaperones m 98.1 3.5E-05 7.5E-10 72.6 10.5 217 58-305 161-400 (640)
56 TIGR00241 CoA_E_activ CoA-subs 97.9 0.00026 5.7E-09 62.5 13.8 207 35-303 33-248 (248)
57 TIGR03286 methan_mark_15 putat 97.1 0.0066 1.4E-07 56.5 11.2 47 251-305 356-402 (404)
58 COG1924 Activator of 2-hydroxy 97.0 0.0063 1.4E-07 55.6 9.7 44 254-305 346-389 (396)
59 TIGR02261 benz_CoA_red_D benzo 97.0 0.0021 4.5E-08 56.6 6.5 50 252-304 213-262 (262)
60 PRK10719 eutA reactivating fac 96.8 0.0023 5E-08 60.4 6.0 117 26-145 55-184 (475)
61 TIGR03192 benz_CoA_bzdQ benzoy 96.8 0.0049 1.1E-07 55.1 7.7 48 250-305 239-287 (293)
62 PF08841 DDR: Diol dehydratase 96.4 0.0057 1.2E-07 53.6 4.9 205 74-300 98-325 (332)
63 TIGR02259 benz_CoA_red_A benzo 96.3 0.027 5.9E-07 52.2 9.1 51 251-304 382-432 (432)
64 PRK13317 pantothenate kinase; 95.7 0.081 1.8E-06 47.4 9.2 51 250-305 222-273 (277)
65 PF01869 BcrAD_BadFG: BadF/Bad 94.7 0.13 2.8E-06 45.9 7.5 48 254-304 224-271 (271)
66 PF06277 EutA: Ethanolamine ut 94.6 0.11 2.3E-06 49.4 6.9 128 26-157 52-204 (473)
67 PF14450 FtsA: Cell division p 94.2 0.25 5.4E-06 38.2 7.2 58 108-176 2-70 (120)
68 PF01968 Hydantoinase_A: Hydan 92.9 0.093 2E-06 47.4 3.2 35 96-130 67-102 (290)
69 COG2441 Predicted butyrate kin 92.4 0.1 2.3E-06 45.7 2.6 48 105-152 163-214 (374)
70 PF02541 Ppx-GppA: Ppx/GppA ph 89.4 0.54 1.2E-05 42.3 4.6 85 58-146 59-151 (285)
71 TIGR03123 one_C_unchar_1 proba 88.9 0.4 8.6E-06 43.7 3.3 28 103-130 126-153 (318)
72 PF07318 DUF1464: Protein of u 87.0 5.3 0.00011 36.7 9.2 49 253-305 263-314 (343)
73 TIGR00744 ROK_glcA_fam ROK fam 86.9 23 0.00051 32.0 13.8 52 76-129 89-147 (318)
74 COG1548 Predicted transcriptio 85.5 0.63 1.4E-05 40.6 2.4 23 104-126 129-151 (330)
75 KOG2708 Predicted metalloprote 84.2 6.6 0.00014 33.8 7.8 123 24-153 32-171 (336)
76 COG0248 GppA Exopolyphosphatas 82.1 1.9 4E-05 41.9 4.3 75 70-146 87-168 (492)
77 PRK11031 guanosine pentaphosph 78.8 2.6 5.5E-05 41.2 4.1 86 57-146 78-171 (496)
78 TIGR03706 exo_poly_only exopol 77.0 2.2 4.8E-05 38.7 3.0 86 57-146 72-164 (300)
79 COG0145 HyuA N-methylhydantoin 74.9 2.8 6E-05 42.4 3.2 44 86-129 253-302 (674)
80 PF08735 DUF1786: Putative pyr 73.0 36 0.00077 30.0 9.2 39 90-128 145-190 (254)
81 PRK00976 hypothetical protein; 72.1 31 0.00066 31.6 8.9 32 97-129 141-172 (326)
82 PRK10854 exopolyphosphatase; P 69.4 4.2 9.1E-05 39.9 3.1 85 57-145 83-175 (513)
83 PF03702 UPF0075: Uncharacteri 60.1 4.5 9.8E-05 37.7 1.2 26 251-276 285-310 (364)
84 PRK05082 N-acetylmannosamine k 56.1 15 0.00032 32.9 3.9 51 78-130 90-146 (291)
85 PRK13310 N-acetyl-D-glucosamin 52.9 18 0.00039 32.6 3.9 53 76-130 88-147 (303)
86 PRK09698 D-allose kinase; Prov 51.9 23 0.0005 31.9 4.5 53 76-130 96-154 (302)
87 PRK09557 fructokinase; Reviewe 51.9 19 0.00041 32.5 3.9 53 76-130 88-147 (301)
88 KOG2707 Predicted metalloprote 50.9 11 0.00024 34.7 2.1 74 231-306 288-362 (405)
89 PTZ00340 O-sialoglycoprotein e 50.2 10 0.00022 35.2 1.8 50 251-305 264-319 (345)
90 COG4012 Uncharacterized protei 49.4 1.1E+02 0.0024 27.2 7.8 40 89-128 207-250 (342)
91 PF02782 FGGY_C: FGGY family o 47.9 27 0.00059 29.0 4.0 47 251-306 150-196 (198)
92 COG4819 EutA Ethanolamine util 44.0 86 0.0019 28.9 6.5 113 27-142 55-180 (473)
93 COG0533 QRI7 Metal-dependent p 43.2 16 0.00036 33.5 2.0 50 251-305 262-317 (342)
94 smart00732 YqgFc Likely ribonu 42.9 74 0.0016 22.8 5.3 44 107-150 3-47 (99)
95 TIGR00555 panK_eukar pantothen 42.5 21 0.00045 32.1 2.5 68 230-302 209-278 (279)
96 cd08627 PI-PLCc_gamma1 Catalyt 37.6 50 0.0011 28.6 4.0 43 38-86 75-117 (229)
97 TIGR03367 queuosine_QueD queuo 37.6 28 0.0006 25.4 2.2 49 29-84 42-90 (92)
98 PRK09585 anmK anhydro-N-acetyl 37.0 20 0.00044 33.4 1.7 22 253-274 289-310 (365)
99 KOG1794 N-Acetylglucosamine ki 36.7 2.2E+02 0.0047 25.8 7.8 91 37-128 47-143 (336)
100 COG1521 Pantothenate kinase ty 36.4 2.3E+02 0.005 25.0 8.0 21 105-126 122-142 (251)
101 cd08594 PI-PLCc_eta Catalytic 35.6 51 0.0011 28.5 3.7 43 37-85 74-116 (227)
102 cd08630 PI-PLCc_delta3 Catalyt 35.4 54 0.0012 29.0 4.0 44 37-86 74-117 (258)
103 KOG0169 Phosphoinositide-speci 34.8 30 0.00065 35.1 2.5 32 54-85 372-403 (746)
104 cd08626 PI-PLCc_beta4 Catalyti 34.6 57 0.0012 28.8 3.9 44 37-86 76-119 (257)
105 cd08632 PI-PLCc_eta1 Catalytic 34.5 58 0.0013 28.7 3.9 43 37-85 74-116 (253)
106 cd08595 PI-PLCc_zeta Catalytic 34.0 57 0.0012 28.8 3.9 44 37-86 74-117 (257)
107 cd08591 PI-PLCc_beta Catalytic 33.7 54 0.0012 29.0 3.6 33 54-86 87-119 (257)
108 cd08631 PI-PLCc_delta4 Catalyt 33.5 58 0.0013 28.8 3.8 32 54-85 85-116 (258)
109 cd08629 PI-PLCc_delta1 Catalyt 33.1 61 0.0013 28.7 3.9 43 38-86 75-117 (258)
110 cd08596 PI-PLCc_epsilon Cataly 32.9 62 0.0014 28.5 3.9 42 38-85 75-116 (254)
111 cd08592 PI-PLCc_gamma Catalyti 32.9 63 0.0014 28.1 3.8 44 37-86 74-117 (229)
112 cd08593 PI-PLCc_delta Catalyti 32.5 61 0.0013 28.7 3.8 44 37-86 74-117 (257)
113 PRK13324 pantothenate kinase; 32.3 3E+02 0.0066 24.3 8.2 21 105-125 124-144 (258)
114 cd08598 PI-PLC1c_yeast Catalyt 32.2 64 0.0014 28.0 3.8 44 37-86 74-117 (231)
115 cd08633 PI-PLCc_eta2 Catalytic 31.4 69 0.0015 28.2 3.9 43 37-85 74-116 (254)
116 PF03727 Hexokinase_2: Hexokin 30.3 65 0.0014 28.1 3.7 50 254-306 189-240 (243)
117 cd08597 PI-PLCc_PRIP_metazoa C 29.5 73 0.0016 28.3 3.8 44 37-86 74-117 (260)
118 KOG1794 N-Acetylglucosamine ki 29.4 67 0.0015 29.0 3.5 72 230-305 243-315 (336)
119 TIGR03286 methan_mark_15 putat 29.4 95 0.0021 29.4 4.7 97 59-155 75-194 (404)
120 PRK14878 UGMP family protein; 29.1 52 0.0011 30.1 3.0 35 251-290 242-276 (323)
121 cd08558 PI-PLCc_eukaryota Cata 28.7 81 0.0017 27.3 3.8 44 37-86 74-117 (226)
122 PRK15027 xylulokinase; Provisi 28.5 43 0.00094 32.5 2.5 35 86-120 225-261 (484)
123 TIGR03192 benz_CoA_bzdQ benzoy 27.7 92 0.002 28.2 4.2 47 107-155 34-83 (293)
124 TIGR00329 gcp_kae1 metallohydr 27.0 54 0.0012 29.8 2.7 34 252-290 260-293 (305)
125 PRK03011 butyrate kinase; Prov 26.4 68 0.0015 29.9 3.2 46 252-301 297-342 (358)
126 COG4962 CpaF Flp pilus assembl 25.5 3.1E+02 0.0068 25.5 7.2 27 252-281 174-200 (355)
127 cd08628 PI-PLCc_gamma2 Catalyt 25.4 1E+02 0.0022 27.2 3.9 44 37-86 74-117 (254)
128 PLN02666 5-oxoprolinase 25.1 67 0.0014 35.4 3.3 21 105-126 314-334 (1275)
129 TIGR01319 glmL_fam conserved h 24.9 44 0.00095 32.2 1.7 61 68-128 191-272 (463)
130 cd08599 PI-PLCc_plant Catalyti 24.5 1.1E+02 0.0024 26.5 3.9 32 54-85 85-116 (228)
131 PF11072 DUF2859: Protein of u 24.1 22 0.00048 28.3 -0.4 62 1-65 59-139 (142)
132 COG1149 MinD superfamily P-loo 23.9 89 0.0019 27.9 3.3 39 56-95 186-224 (284)
133 PRK13333 pantothenate kinase; 23.8 88 0.0019 26.7 3.2 30 93-125 74-103 (206)
134 cd08623 PI-PLCc_beta1 Catalyti 23.2 1.1E+02 0.0025 27.0 3.8 43 38-86 77-120 (258)
135 PRK13321 pantothenate kinase; 22.7 2.5E+02 0.0055 24.6 6.1 47 108-154 3-51 (256)
136 TIGR01312 XylB D-xylulose kina 21.8 1.2E+02 0.0026 29.2 4.2 48 251-307 391-438 (481)
137 TIGR03281 methan_mark_12 putat 21.3 91 0.002 28.3 2.9 43 253-305 265-310 (326)
138 cd08624 PI-PLCc_beta2 Catalyti 21.2 1.3E+02 0.0028 26.7 3.7 44 37-86 76-120 (261)
139 PF02201 SWIB: SWIB/MDM2 domai 20.4 89 0.0019 21.7 2.2 32 33-65 20-51 (76)
140 cd08625 PI-PLCc_beta3 Catalyti 20.4 1.3E+02 0.0027 26.7 3.5 43 38-86 77-120 (258)
141 TIGR03723 bact_gcp putative gl 20.3 53 0.0011 30.0 1.2 25 252-276 261-285 (314)
142 PRK13318 pantothenate kinase; 20.3 2.7E+02 0.0059 24.4 5.8 47 108-154 3-51 (258)
143 KOG1385 Nucleoside phosphatase 20.2 6.2E+02 0.013 24.2 8.0 50 230-279 122-172 (453)
144 TIGR03722 arch_KAE1 universal 20.2 1E+02 0.0022 28.2 3.0 26 251-276 243-268 (322)
145 PF00370 FGGY_N: FGGY family o 20.2 96 0.0021 26.8 2.8 29 108-136 3-32 (245)
146 TIGR01311 glycerol_kin glycero 20.0 90 0.0019 30.4 2.9 47 251-306 400-446 (493)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=5.9e-77 Score=553.10 Aligned_cols=327 Identities=58% Similarity=1.062 Sum_probs=311.5
Q ss_pred CcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 6 QKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 6 ~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
.+++++|++|...+..+++++|+++|.|.|||.++.+|+|+|++.|+++|+++|+++++|+++++..|+++++++||.|+
T Consensus 49 ~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~ 128 (375)
T PTZ00452 49 NKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFN 128 (375)
T ss_pred ccceEEChhhhccccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccC
Confidence 56789999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHH
Q 020045 86 TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREI 165 (332)
Q Consensus 86 ~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~ 165 (332)
+|++++.+++++++|++|++||+|||+|++.|+|+||+||++++++..++++||++++++|.++|..+++.+....+.++
T Consensus 129 vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~ 208 (375)
T PTZ00452 129 TPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRII 208 (375)
T ss_pred CceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888776667889
Q ss_pred HHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHH
Q 020045 166 VRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVD 245 (332)
Q Consensus 166 ~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~ 245 (332)
++++|+++||++.|+.++++.....+.....|.+|||+.+.++.+|+.+||+||+|++++.+..+|+++|.++|.+||+|
T Consensus 209 ~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d 288 (375)
T PTZ00452 209 VKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLD 288 (375)
T ss_pred HHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHh
Confidence 99999999999999988776554434456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCc
Q 020045 246 IRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPS 325 (332)
Q Consensus 246 ~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~ 325 (332)
.|+.|++||||+||+|++|||.+||++||+.++|.+.++++..++++.+++|.|||++|++++|++.||||+||+|+|++
T Consensus 289 ~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~ 368 (375)
T PTZ00452 289 LRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPS 368 (375)
T ss_pred HHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccccccC
Q 020045 326 IVHRKCF 332 (332)
Q Consensus 326 ~i~~k~~ 332 (332)
+++||||
T Consensus 369 i~~~k~~ 375 (375)
T PTZ00452 369 IVHRKCF 375 (375)
T ss_pred eeeeecC
Confidence 9999997
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.1e-75 Score=545.92 Aligned_cols=329 Identities=91% Similarity=1.420 Sum_probs=312.3
Q ss_pred CCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccc
Q 020045 4 MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 83 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 83 (332)
.+.+++++|+++...+....+++|+++|.|.||+.++.+|+|+|.+.|.++|+++|+++++|+++++..|+++++++||.
T Consensus 48 ~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~ 127 (376)
T PTZ00281 48 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127 (376)
T ss_pred cccCCeEECchhhccccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcc
Confidence 34568899999888788899999999999999999999999999889999999999999999999999999999999999
Q ss_pred cCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHH
Q 020045 84 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAER 163 (332)
Q Consensus 84 ~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~ 163 (332)
|++|++++.+++++++|++|++||||||+|++.|+|+||+||+++.++..++++||++++++|.++|..++..+....+.
T Consensus 128 ~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~ 207 (376)
T PTZ00281 128 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAER 207 (376)
T ss_pred cCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888887666778
Q ss_pred HHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCC
Q 020045 164 EIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCD 243 (332)
Q Consensus 164 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~ 243 (332)
++++++|+++|||+.|+..+++....+......|.+|||+.+.++.+|+.+||+||+|+..+.+..+|+++|.++|.+||
T Consensus 208 ~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~ 287 (376)
T PTZ00281 208 EIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCD 287 (376)
T ss_pred HHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCC
Confidence 89999999999999998877765544445567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcC
Q 020045 244 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 323 (332)
Q Consensus 244 ~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G 323 (332)
+|.|+.|++||||+||+|++|||.+||++||+.+.|...++++..++++.+++|+|||++|++++|...||||+||+|+|
T Consensus 288 ~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G 367 (376)
T PTZ00281 288 VDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 367 (376)
T ss_pred hhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CcccccccC
Q 020045 324 PSIVHRKCF 332 (332)
Q Consensus 324 ~~~i~~k~~ 332 (332)
+++++||||
T Consensus 368 ~~~~~~k~~ 376 (376)
T PTZ00281 368 PSIVHRKCF 376 (376)
T ss_pred chheeeecC
Confidence 999999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.3e-75 Score=542.96 Aligned_cols=327 Identities=51% Similarity=0.956 Sum_probs=308.6
Q ss_pred CCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccc
Q 020045 4 MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 83 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 83 (332)
.+.++++||+++...+....+++|+++|.|.|||.++.+|+|+| +.|++++.++|+++++++++++..|+++++++||.
T Consensus 54 ~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~ 132 (380)
T PTZ00466 54 AVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFET 132 (380)
T ss_pred CCCCCeEECchhhhhCcCceeCccccCCeECCHHHHHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhcc
Confidence 34568899999988788889999999999999999999999998 78999999999999999999999999999999999
Q ss_pred cCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHH
Q 020045 84 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAER 163 (332)
Q Consensus 84 ~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~ 163 (332)
|++|++++.+++++++|++|++||+|||+|++.|+|+||+||+++.++..++++||++++++|.++|.+++..+....+.
T Consensus 133 ~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~ 212 (380)
T PTZ00466 133 FNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEM 212 (380)
T ss_pred CCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888777767778
Q ss_pred HHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCC
Q 020045 164 EIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCD 243 (332)
Q Consensus 164 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~ 243 (332)
++++++|+++||++.|+.++++... .......|.+|||+.+.++.+|+.+||+||+|+.++.+..+|+++|.++|.+||
T Consensus 213 ~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~ 291 (380)
T PTZ00466 213 EVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRAD 291 (380)
T ss_pred HHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCC
Confidence 8999999999999999887765432 222357899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcC
Q 020045 244 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 323 (332)
Q Consensus 244 ~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G 323 (332)
+|.|+.|++||||+||+|++|||.+||++||+.+.|.+.++++..++++++++|+|||++|++++|+..||||+||+|+|
T Consensus 292 ~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G 371 (380)
T PTZ00466 292 MDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYG 371 (380)
T ss_pred hhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CcccccccC
Q 020045 324 PSIVHRKCF 332 (332)
Q Consensus 324 ~~~i~~k~~ 332 (332)
+++++||||
T Consensus 372 ~~iv~rk~~ 380 (380)
T PTZ00466 372 SVILHRKTF 380 (380)
T ss_pred cHhheeecC
Confidence 999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.2e-76 Score=534.47 Aligned_cols=327 Identities=81% Similarity=1.308 Sum_probs=311.1
Q ss_pred CCCCCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhc
Q 020045 1 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 80 (332)
Q Consensus 1 ~~~~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~l 80 (332)
|+||..++.+||++|...+ ++++|++||.|.||++++.+|+|+|++.|+++|+++|+++++|+++|+..|+++++++
T Consensus 46 ~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~ 122 (372)
T KOG0676|consen 46 MAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIM 122 (372)
T ss_pred cccccccccccchhhhccc---cccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHh
Confidence 6789999999999999888 7899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccch
Q 020045 81 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTT 160 (332)
Q Consensus 81 fe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~ 160 (332)
||.|++|++++..++++ |++|.+||+|||+|++.|+++||+||++++++..++++||+++++++...|.++++.+...
T Consensus 123 FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~ 200 (372)
T KOG0676|consen 123 FETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTS 200 (372)
T ss_pred hhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccc
Confidence 99999999999554444 9999999999999999999999999999999999999999999999999988888888888
Q ss_pred hHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHh
Q 020045 161 AEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIM 240 (332)
Q Consensus 161 ~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~ 240 (332)
.+.++++++|++.||++.|+.+++............|.+|||+.+.++++|+.+||++|+|+.++.+..+|++++..+|.
T Consensus 201 ~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~ 280 (372)
T KOG0676|consen 201 AEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIM 280 (372)
T ss_pred cHHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHH
Confidence 89999999999999999999999887444444566699999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHh
Q 020045 241 KCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYD 320 (332)
Q Consensus 241 ~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~ 320 (332)
+||+|+|+.|+.||||+||++.+|||.+|+++|++.+.|...++++..+|++.+++|.||||+|++++|+..||||+||+
T Consensus 281 kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~ 360 (372)
T KOG0676|consen 281 KCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYE 360 (372)
T ss_pred hCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccC
Q 020045 321 ESGPSIVHRKCF 332 (332)
Q Consensus 321 e~G~~~i~~k~~ 332 (332)
|+|+.+++||||
T Consensus 361 e~g~~~~~rk~f 372 (372)
T KOG0676|consen 361 EHGPSIIHRKCF 372 (372)
T ss_pred hhCCceeeeccC
Confidence 999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=5.6e-74 Score=535.20 Aligned_cols=330 Identities=82% Similarity=1.314 Sum_probs=310.7
Q ss_pred CCCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhccc
Q 020045 3 GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 82 (332)
Q Consensus 3 ~~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe 82 (332)
|.+.+++++|+++...+....+++|+++|.|.||+.++.+|+|+|.+.|++++.++|+++++|+++++..|+++++++||
T Consensus 47 ~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE 126 (378)
T PTZ00004 47 GMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 126 (378)
T ss_pred CcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHh
Confidence 33467889999998877778999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhH
Q 020045 83 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAE 162 (332)
Q Consensus 83 ~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~ 162 (332)
.++++++++.+++++++|++|++||||||+|++.|+|+||+||+++.++..++++||++++++|.++|..++..+.+..+
T Consensus 127 ~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~ 206 (378)
T PTZ00004 127 THNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAE 206 (378)
T ss_pred hcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777677
Q ss_pred HHHHHHHHHHcccccccHHHHHHHhccCCC-ccceEECCCCceEeeCCccccccccCCCCccCCCc-CCChHHHHHHHHh
Q 020045 163 REIVRDMKEKLAYIALDYEQELETAKTSSA-VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGME-AAGIHETTYNSIM 240 (332)
Q Consensus 163 ~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~-~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~i~~~i~ 240 (332)
.++++++|+++||++.|+.++++....... ....|.+|||+.+.++.+|+.+||+||+|+.++.+ ..+|+++|.++|.
T Consensus 207 ~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~ 286 (378)
T PTZ00004 207 KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSIN 286 (378)
T ss_pred HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHH
Confidence 889999999999999999887765432222 36789999999999999999999999999998888 8999999999999
Q ss_pred cCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHh
Q 020045 241 KCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYD 320 (332)
Q Consensus 241 ~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~ 320 (332)
+||+|.|+.|++||||+||+|++|||.+||++||+.++|...++++..++++.+++|+|||++|++++|+..||||+||+
T Consensus 287 ~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYe 366 (378)
T PTZ00004 287 KCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYD 366 (378)
T ss_pred hCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHh
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred hcCCcccccccC
Q 020045 321 ESGPSIVHRKCF 332 (332)
Q Consensus 321 e~G~~~i~~k~~ 332 (332)
|+|++++.||||
T Consensus 367 E~G~~~~~rk~~ 378 (378)
T PTZ00004 367 ESGPSIVHRKCF 378 (378)
T ss_pred hhCcceEEeecC
Confidence 999999999998
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=7.7e-69 Score=506.61 Aligned_cols=325 Identities=43% Similarity=0.771 Sum_probs=298.1
Q ss_pred CcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 6 QKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 6 ~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
.+++++|++|+..+..+.+++|+++|.|.|||.++.+|+|+|++.|+++|.++++++++|+++++..|+.+++++||.++
T Consensus 51 ~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~ 130 (414)
T PTZ00280 51 DLDFYIGDEALAASKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFN 130 (414)
T ss_pred cCCEEEcchhhhCcCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccC
Confidence 34789999999888889999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCeEEEeechhhhhhcc----------CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 86 TPAMYVAIQAVLSLYAS----------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 86 ~~~v~~~~~~~~a~~~~----------g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
+|++++.+++++++|++ |.+||||||+|++.|+|+||+||+++.++..++++||++++++|.++|.+++.
T Consensus 131 ~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~ 210 (414)
T PTZ00280 131 VKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGE 210 (414)
T ss_pred CCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999998888
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCC-CccceEECCC---Cc--eEeeCCccccccccCCCCccCCCc-C
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS-AVEKSYELPD---GQ--VITIGAERFRCPEVLFQPSMIGME-A 228 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~-~~~~~~~lp~---~~--~i~i~~~~~~~~E~lf~p~~~~~~-~ 228 (332)
.+....+.++++++|+++||++.|+.++++...... .....|.+|| |. .+.++.+|+.+||+||+|+.++.+ .
T Consensus 211 ~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~ 290 (414)
T PTZ00280 211 PIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWT 290 (414)
T ss_pred CCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccC
Confidence 776656678999999999999999888877554322 2345688877 33 788999999999999999887654 4
Q ss_pred CChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhC----------------CCCceEEEECCCCC
Q 020045 229 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA----------------PSSMKIKVVAPPER 292 (332)
Q Consensus 229 ~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~----------------~~~~~v~v~~~~~~ 292 (332)
.+|+++|.++|++||+|.|+.|++||||+||+|++|||.+||++||+.++ |...+++|..++++
T Consensus 291 ~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 370 (414)
T PTZ00280 291 TPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQ 370 (414)
T ss_pred CCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCcc
Confidence 59999999999999999999999999999999999999999999999986 34567899988888
Q ss_pred ccccchhhHHhhcccccccccccHHHHhhcCCcccccc
Q 020045 293 KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK 330 (332)
Q Consensus 293 ~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~k 330 (332)
.+++|+|||++|++++|++.||||+||+|+|+++++++
T Consensus 371 ~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 371 RYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred ceeEEEChhhcccCcchhhheEEHHHHhccChHheeec
Confidence 99999999999999999999999999999999999887
No 7
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=3e-68 Score=497.77 Aligned_cols=326 Identities=69% Similarity=1.201 Sum_probs=306.1
Q ss_pred cceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 7 KDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 7 ~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+++++|+++..++....+++|+++|.|.||+.++.+|+|+|.+.|++++.++++++++|.+.+...|+.+++++||.+++
T Consensus 45 ~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~ 124 (373)
T smart00268 45 KDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNF 124 (373)
T ss_pred cceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCC
Confidence 37899999987777679999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHH
Q 020045 87 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV 166 (332)
Q Consensus 87 ~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~ 166 (332)
+++++++++++|+|++|.++|+|||+|++.|+|+||+||+++.++..++++||++++++|.++|+.++..+....+.+.+
T Consensus 125 ~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~ 204 (373)
T smart00268 125 PALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIV 204 (373)
T ss_pred CeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998866666656677899
Q ss_pred HHHHHHcccccccHHHHHHHhcc---CCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCC
Q 020045 167 RDMKEKLAYIALDYEQELETAKT---SSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCD 243 (332)
Q Consensus 167 ~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~ 243 (332)
+++|++.|+++.++.++++.... .......|.+|||+.+.++.+|+.++|.||+|+..+.+..+|+++|.++|.+||
T Consensus 205 ~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~ 284 (373)
T smart00268 205 REIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCD 284 (373)
T ss_pred HHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCC
Confidence 99999999999998877765432 234567899999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcC
Q 020045 244 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 323 (332)
Q Consensus 244 ~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G 323 (332)
+|.|+.+++|||||||+|++|||.+||++||+.+.|...++++..++++.+++|.|||++|++++|..+||||+||+|+|
T Consensus 285 ~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G 364 (373)
T smart00268 285 IDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHG 364 (373)
T ss_pred HhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhC
Confidence 99999999999999999999999999999999999988889999889999999999999999999999999999999999
Q ss_pred CcccccccC
Q 020045 324 PSIVHRKCF 332 (332)
Q Consensus 324 ~~~i~~k~~ 332 (332)
+++++||||
T Consensus 365 ~~i~~~k~~ 373 (373)
T smart00268 365 SQIVERKCF 373 (373)
T ss_pred cceEEeecC
Confidence 999999998
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.6e-68 Score=501.83 Aligned_cols=324 Identities=51% Similarity=0.966 Sum_probs=287.8
Q ss_pred ceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCC
Q 020045 8 DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 87 (332)
Q Consensus 8 ~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 87 (332)
++++|+++........+++|+++|.+.||+.++.+|+|+|.+.|.+++.++++++++|+++++..|+.+++++||++++|
T Consensus 45 ~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~ 124 (393)
T PF00022_consen 45 DYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVP 124 (393)
T ss_dssp SCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--S
T ss_pred eEEeecccccchhheeeeeeccccccccccccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccc
Confidence 68999997776778999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCc----------
Q 020045 88 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF---------- 157 (332)
Q Consensus 88 ~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~---------- 157 (332)
+++++++++||+|++|.+||||||+|++.|+|+||+||+++.++..++++||++++++|.++|+.++...
T Consensus 125 ~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~ 204 (393)
T PF00022_consen 125 SVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKS 204 (393)
T ss_dssp EEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHC
T ss_pred eeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999864332
Q ss_pred -------cchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCC-
Q 020045 158 -------TTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAA- 229 (332)
Q Consensus 158 -------~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~- 229 (332)
....+..+++++|++.|+++.++.. .+...........|.+|||+.+.++.+|+.+||+||+|+..+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~-~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~ 283 (393)
T PF00022_consen 205 PVEGESYNNSDDEEIVEEIKEECCYVSEDPDE-EQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSAS 283 (393)
T ss_dssp CC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHH-HHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS
T ss_pred ccccccccchhhhccchhccchhhhccccccc-ccccccccccceecccccccccccccccccccccccccccccccccc
Confidence 2334577899999999999998764 1111222445678999999999999999999999999998887766
Q ss_pred ------ChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC-CCccccchhhHH
Q 020045 230 ------GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP-ERKYSVWIGGSI 302 (332)
Q Consensus 230 ------~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi 302 (332)
+|+++|.++|++||+|.|+.|++|||||||+|++|||.+||++||..+.|...++++..++ +|.+++|.|||+
T Consensus 284 ~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsi 363 (393)
T PF00022_consen 284 EPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSI 363 (393)
T ss_dssp ---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHH
T ss_pred cccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhccccccee
Confidence 9999999999999999999999999999999999999999999999999888899999998 999999999999
Q ss_pred hhcccccccccccHHHHhhcCCcccccccC
Q 020045 303 LASLSTFQQMWIAKAEYDESGPSIVHRKCF 332 (332)
Q Consensus 303 ~a~l~~~~~~~itr~ey~e~G~~~i~~k~~ 332 (332)
+|++++|.++||||+||+|+|+++++||||
T Consensus 364 lasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 364 LASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred eeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999999998
No 9
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.9e-65 Score=478.41 Aligned_cols=326 Identities=71% Similarity=1.194 Sum_probs=302.0
Q ss_pred CCcceeeccccccccC-ceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccc
Q 020045 5 GQKDAYVGDEAQSKRG-ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 83 (332)
Q Consensus 5 ~~~~~~vG~~a~~~~~-~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 83 (332)
+.+++++|++|..... .+.+++|+++|.+.||+.++.+|+|+|.+.+..+++++++++++|+++++..|+.+++++||.
T Consensus 42 ~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~ 121 (371)
T cd00012 42 GDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFET 121 (371)
T ss_pred CCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhcc
Confidence 4578999999988765 489999999999999999999999999888888889999999999999999999999999999
Q ss_pred cCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHH
Q 020045 84 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAER 163 (332)
Q Consensus 84 ~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~ 163 (332)
++++++++++++++|+|++|.++|||||+|++.|+|+||+||+++.++..++++||+++++++.++|+.++..+....+.
T Consensus 122 ~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~ 201 (371)
T cd00012 122 FNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDER 201 (371)
T ss_pred CCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888766666778
Q ss_pred HHHHHHHHHcccccccHHHHHHHh-ccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcC
Q 020045 164 EIVRDMKEKLAYIALDYEQELETA-KTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKC 242 (332)
Q Consensus 164 ~~~~~ik~~~~~v~~~~~~~~~~~-~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~ 242 (332)
..++++|+++|+++.++.+++... .........|.+||++.+.++.+|+.+||+||+|+..+....+|+++|.++|+++
T Consensus 202 ~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~ 281 (371)
T cd00012 202 EIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKC 281 (371)
T ss_pred HHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhC
Confidence 899999999999999887765322 2233456789999999999999999999999999988888999999999999999
Q ss_pred CHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCC--CceEEEECCCCCccccchhhHHhhcccccccccccHHHHh
Q 020045 243 DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS--SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYD 320 (332)
Q Consensus 243 ~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~--~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~ 320 (332)
|.+.|+.+++||+||||+|++|||.+||++||..+.|. ...+++...++|.+++|.|||++|++++|+++||||+||+
T Consensus 282 ~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~ 361 (371)
T cd00012 282 DIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYE 361 (371)
T ss_pred CHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHh
Confidence 99999999999999999999999999999999999987 5567777788999999999999999999999999999999
Q ss_pred hcCCcccccc
Q 020045 321 ESGPSIVHRK 330 (332)
Q Consensus 321 e~G~~~i~~k 330 (332)
|+|+++++||
T Consensus 362 E~G~~~~~~k 371 (371)
T cd00012 362 EHGPSIVHRK 371 (371)
T ss_pred hhCchhEecC
Confidence 9999999987
No 10
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=3.8e-66 Score=453.87 Aligned_cols=322 Identities=41% Similarity=0.765 Sum_probs=283.1
Q ss_pred Ccceeeccccccc-cCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhccccc
Q 020045 6 QKDAYVGDEAQSK-RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 84 (332)
Q Consensus 6 ~~~~~vG~~a~~~-~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~ 84 (332)
.+.+|++.+|... +....++.|+++|.+.|||.++.+|+|.|.++|.++|.++|+++++|+++++..|++++|.+||++
T Consensus 54 ~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~ 133 (426)
T KOG0679|consen 54 KKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKL 133 (426)
T ss_pred ccceEeechhccCCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhc
Confidence 4668999998875 778999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhH--
Q 020045 85 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAE-- 162 (332)
Q Consensus 85 ~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~-- 162 (332)
++|+++++.+++|++|++|+.||||||||+++|+|+||+||+++.++..+.++||+.|+..++++|...++.+.+...
T Consensus 134 nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia 213 (426)
T KOG0679|consen 134 NVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIA 213 (426)
T ss_pred CCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987665433110
Q ss_pred -------------------------------HHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCcc
Q 020045 163 -------------------------------REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAER 211 (332)
Q Consensus 163 -------------------------------~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~ 211 (332)
..+.++.|+..+.++....++- ..++...+.|++|||....++.+|
T Consensus 214 ~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~---~~~~i~~~~~efP~g~~~~~G~er 290 (426)
T KOG0679|consen 214 SKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEE---VAAQIPTKHFEFPDGYTLDFGAER 290 (426)
T ss_pred hcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccc---ccccCCCccccCCCCcccccCcce
Confidence 1134444444444442211110 011235678999999999999999
Q ss_pred ccccccCCCCccCC------------CcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCC
Q 020045 212 FRCPEVLFQPSMIG------------MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP 279 (332)
Q Consensus 212 ~~~~E~lf~p~~~~------------~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~ 279 (332)
+++||.||.|+... ....|+++++..+|..||+|+|..|+.|||+|||+|+|+||.+||.+||..+.|
T Consensus 291 ~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P 370 (426)
T KOG0679|consen 291 FRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAP 370 (426)
T ss_pred eecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCC
Confidence 99999999998642 234589999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCC---CCccccchhhHHhhcccccccccccHHHHhhcCC-ccccccc
Q 020045 280 SSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP-SIVHRKC 331 (332)
Q Consensus 280 ~~~~v~v~~~~---~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~-~~i~~k~ 331 (332)
.+ ++++++.. ++++++|+||||+|+|++|..+|++|+||+|.|. +.+.|||
T Consensus 371 ~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 371 SS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred cc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 87 99998864 8899999999999999999999999999999999 7899998
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.4e-65 Score=429.18 Aligned_cols=326 Identities=50% Similarity=0.911 Sum_probs=307.8
Q ss_pred CCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhccccc
Q 020045 5 GQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 84 (332)
Q Consensus 5 ~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~ 84 (332)
+-||+.|||+|-..++.+.+.||+++|.+.||++++++|+|.|.+.|.++|++.++++++||++|...|+++++.+||++
T Consensus 49 ~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY 128 (389)
T KOG0677|consen 49 EIKDLMVGDEASELRSLLDINYPMENGIVRNWDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKY 128 (389)
T ss_pred ehhhheccchHHHHHHHHhcCCccccccccChHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHH
Q 020045 85 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAERE 164 (332)
Q Consensus 85 ~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~ 164 (332)
+|.+|++.-++++++|+.|..||+|||.|.+.|.|+||++|+.+++-..+++++|++++++|-++|.++|+.++.+.+.+
T Consensus 129 ~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFE 208 (389)
T KOG0677|consen 129 GFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFE 208 (389)
T ss_pred CCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCH
Q 020045 165 IVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDV 244 (332)
Q Consensus 165 ~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~ 244 (332)
.++.+|++.||++.|++.+-+....+......|.+|||..|.++.|||.+||+||+|.+++.+.+++.+++..+|+..++
T Consensus 209 TVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDi 288 (389)
T KOG0677|consen 209 TVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADI 288 (389)
T ss_pred HHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhcc
Confidence 99999999999999988776666666667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccccCccCCcChHHHHHHHHHhhCC-----------CCceEEEECCCCCccccchhhHHhhcc-cccccc
Q 020045 245 DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQM 312 (332)
Q Consensus 245 ~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~ 312 (332)
|.|..++++|||+||++..||+..||++||+++.- ...++++-.||.+.+-+++||+.+|.+ ..-+++
T Consensus 289 D~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~f 368 (389)
T KOG0677|consen 289 DIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEF 368 (389)
T ss_pred chHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccc
Confidence 99999999999999999999999999999987641 235788888998899999999999985 566799
Q ss_pred cccHHHHhhcCCcccccc
Q 020045 313 WIAKAEYDESGPSIVHRK 330 (332)
Q Consensus 313 ~itr~ey~e~G~~~i~~k 330 (332)
|+||+||+|.|...+.+.
T Consensus 369 W~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 369 WMSKQEYQEEGINVLNKL 386 (389)
T ss_pred eecHHHHHhhhHHHHHhh
Confidence 999999999999987653
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=4.3e-61 Score=448.88 Aligned_cols=331 Identities=54% Similarity=0.998 Sum_probs=303.6
Q ss_pred CCCCCcceeeccccccccC--ceeeeccccCCCCCCHHHHHHHHHHHhhh--hcCCCCCCCcEEEeeCCCCCHHhHHHHh
Q 020045 2 VGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSNWDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMT 77 (332)
Q Consensus 2 ~~~~~~~~~vG~~a~~~~~--~~~~~~p~~~g~i~d~~~~~~~l~~~~~~--~l~~~~~~~~vvl~~~~~~~~~~~~~l~ 77 (332)
++.+.++-+||+++...++ ..++++|+++|.|.||++++++|+|+|.. .+..++.++|+++++|+++++..|+.++
T Consensus 47 ~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~ 126 (444)
T COG5277 47 EDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKIT 126 (444)
T ss_pred ccccccccccCchhhhccCCccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHH
Confidence 3456788999999888765 78999999999999999999999999988 6888899999999999999999999999
Q ss_pred hhcccccCCCeEEEeechhhhhhccCCc--eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHh---
Q 020045 78 QIMFETFNTPAMYVAIQAVLSLYASGRT--TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE--- 152 (332)
Q Consensus 78 ~~lfe~~~~~~v~~~~~~~~a~~~~g~~--t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~--- 152 (332)
+++||+++++++++.+++++++|+.|.. +|||||+|++.|+|+||+||..+.++..++++||++++.+|.++|..
T Consensus 127 e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~ 206 (444)
T COG5277 127 ELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYP 206 (444)
T ss_pred HHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred --cCCCccch---hHHHHHHHHHHHcc-------cccccHHHHHHHhcc----------------CCCccceEECCCCce
Q 020045 153 --RGYSFTTT---AEREIVRDMKEKLA-------YIALDYEQELETAKT----------------SSAVEKSYELPDGQV 204 (332)
Q Consensus 153 --~~~~~~~~---~~~~~~~~ik~~~~-------~v~~~~~~~~~~~~~----------------~~~~~~~~~lp~~~~ 204 (332)
+++.+... .+.++++.+|.+.| |+..+..++.+.... .......+.+|+++.
T Consensus 207 ~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 286 (444)
T COG5277 207 PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEE 286 (444)
T ss_pred ccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCce
Confidence 66666554 56889999999999 888776555544332 122345788999999
Q ss_pred EeeCCc-cccccccCCCCc--cCCCcCCC---------------------------hHHHHHHHHhcCCHHHHHHHhcCc
Q 020045 205 ITIGAE-RFRCPEVLFQPS--MIGMEAAG---------------------------IHETTYNSIMKCDVDIRKDLYGNI 254 (332)
Q Consensus 205 i~i~~~-~~~~~E~lf~p~--~~~~~~~~---------------------------l~~~i~~~i~~~~~~~r~~l~~nI 254 (332)
+.++.+ ||.+||.+|.|. ..+.+.++ |++++.++|..+|.+.|+.|++||
T Consensus 287 i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~ni 366 (444)
T COG5277 287 IEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNI 366 (444)
T ss_pred EeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCE
Confidence 999988 999999999999 66655555 999999999999999999999999
Q ss_pred ccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 020045 255 VLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332 (332)
Q Consensus 255 vl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~k~~ 332 (332)
|||||++++|||.+||++||+.+.|....+++..+++|.+.+|+|||++|++..|...||||+||+|+|+++++++||
T Consensus 367 vitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 367 VLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred EEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999998999999999999999999999999999999999999999999999999997
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=7e-60 Score=405.20 Aligned_cols=327 Identities=31% Similarity=0.589 Sum_probs=296.5
Q ss_pred CCCcceeecccccccc--CceeeeccccCCCCCCHHHHHHHHHHHhhhh-cCCCCCCCcEEEeeCCCCCHHhHHHHhhhc
Q 020045 4 MGQKDAYVGDEAQSKR--GILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIM 80 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~~--~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~-l~~~~~~~~vvl~~~~~~~~~~~~~l~~~l 80 (332)
-|+|+.++|++-.+.+ +.+..++|+++|.+++|+...++|+|+|.+. ..++.+++.+++++|.++-+...+...+++
T Consensus 37 ~~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eil 116 (400)
T KOG0680|consen 37 FGRRRSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEIL 116 (400)
T ss_pred cccchhhhhhhhhhccCccceEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHH
Confidence 3567789999866664 4578899999999999999999999999653 345568999999999999999999999999
Q ss_pred ccccCCCeEEEeechhhhhhcc----C-------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHH
Q 020045 81 FETFNTPAMYVAIQAVLSLYAS----G-------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKI 149 (332)
Q Consensus 81 fe~~~~~~v~~~~~~~~a~~~~----g-------~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~ 149 (332)
||+++|.+++-.+.+.++++-. + ..+++|||.|++.|.|+|+++|.+...++.++++||+.+|+.|++.
T Consensus 117 FEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~ 196 (400)
T KOG0680|consen 117 FEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKET 196 (400)
T ss_pred HHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHH
Confidence 9999999999999888888761 1 2379999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCC---CccceEECCC-------------------CceEee
Q 020045 150 LTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS---AVEKSYELPD-------------------GQVITI 207 (332)
Q Consensus 150 l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~---~~~~~~~lp~-------------------~~~i~i 207 (332)
+..+++++. .+..++.++|++.|||++||.+.|..+.... .....|.+|| .|.|++
T Consensus 197 iSyR~lNvm--dET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L 274 (400)
T KOG0680|consen 197 ISYRHLNVM--DETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITL 274 (400)
T ss_pred hhhhhhccc--chhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeee
Confidence 998888774 4678899999999999999999988776543 2344677775 356788
Q ss_pred CCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEE
Q 020045 208 GAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV 287 (332)
Q Consensus 208 ~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~ 287 (332)
.+|||.+||+||+|+..+++++||+|+|.++|..||.++|+.|+.|||++||.++.|||.+||..||++++|.++.++|.
T Consensus 275 ~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~ 354 (400)
T KOG0680|consen 275 TNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVS 354 (400)
T ss_pred cccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 020045 288 APPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332 (332)
Q Consensus 288 ~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~k~~ 332 (332)
.|.+|..-+|.||+-++..++|...|+||+||+|+|++++.+|+|
T Consensus 355 ~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 355 VPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred cCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 999999999999999999999999999999999999999999987
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=6e-48 Score=351.40 Aligned_cols=320 Identities=28% Similarity=0.556 Sum_probs=279.6
Q ss_pred eeccccccccCc-eeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCC--CCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 10 YVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 10 ~vG~~a~~~~~~-~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~--~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+||++-...... ...++||++.+|+||+.+|.+++|+| .+|+++. -++|+++||+..+|...|..+.++|||.+|+
T Consensus 67 ~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~Ygv 145 (645)
T KOG0681|consen 67 LVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGV 145 (645)
T ss_pred cccchhhhhhhhhccCCCCCcCCccccHHHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCC
Confidence 677775554332 57899999999999999999999998 8899987 4799999999999999999999999999999
Q ss_pred CeEEEeechhhhhhc-cCC---ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhH
Q 020045 87 PAMYVAIQAVLSLYA-SGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAE 162 (332)
Q Consensus 87 ~~v~~~~~~~~a~~~-~g~---~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~ 162 (332)
|+|.+.-+++.+.|- ++. .+|+||++|++.|.|.||.||..+...+.++++||.++..||.++|..+++.+....+
T Consensus 146 P~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t 225 (645)
T KOG0681|consen 146 PKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFT 225 (645)
T ss_pred cceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcC
Confidence 999999999999983 333 3699999999999999999999999999999999999999999999998887766778
Q ss_pred HHHHHHHHHHcccccccHHHHHHHhccC-----------------------------------------------CCc--
Q 020045 163 REIVRDMKEKLAYIALDYEQELETAKTS-----------------------------------------------SAV-- 193 (332)
Q Consensus 163 ~~~~~~ik~~~~~v~~~~~~~~~~~~~~-----------------------------------------------~~~-- 193 (332)
+...++++..+||++.||.+++..+... .+.
T Consensus 226 ~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~ 305 (645)
T KOG0681|consen 226 GSKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINAREN 305 (645)
T ss_pred HHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 8899999999999998886665433110 000
Q ss_pred ------------------------cceEE---CCC-----Cc--------------------------------------
Q 020045 194 ------------------------EKSYE---LPD-----GQ-------------------------------------- 203 (332)
Q Consensus 194 ------------------------~~~~~---lp~-----~~-------------------------------------- 203 (332)
+..|. +|+ +.
T Consensus 306 ~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~ 385 (645)
T KOG0681|consen 306 RREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREEN 385 (645)
T ss_pred hhhhHHHHHHHHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhccccccccc
Confidence 00000 000 00
Q ss_pred --------------------------------------------------------------------------------
Q 020045 204 -------------------------------------------------------------------------------- 203 (332)
Q Consensus 204 -------------------------------------------------------------------------------- 203 (332)
T Consensus 386 ~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee 465 (645)
T KOG0681|consen 386 LISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEE 465 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhh
Confidence
Q ss_pred ----------------------------------------------eEeeCCccccccccCCCCccCCCcCCChHHHHHH
Q 020045 204 ----------------------------------------------VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYN 237 (332)
Q Consensus 204 ----------------------------------------------~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~ 237 (332)
.+.++.+++++||++|+|++.|.+++||.|++..
T Consensus 466 ~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~ 545 (645)
T KOG0681|consen 466 ENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDT 545 (645)
T ss_pred hhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHH
Confidence 3456789999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHH
Q 020045 238 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 317 (332)
Q Consensus 238 ~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ 317 (332)
++++.|.+.++.+.+||+||||+|++||+++||.+||..+.|..++++|+...+|..++|+||+.+|.-.+|...++||+
T Consensus 546 il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~ 625 (645)
T KOG0681|consen 546 ILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRK 625 (645)
T ss_pred HHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccccc
Q 020045 318 EYDESGPSIVHRK 330 (332)
Q Consensus 318 ey~e~G~~~i~~k 330 (332)
||+|+|++.++.-
T Consensus 626 dy~E~G~e~~kEh 638 (645)
T KOG0681|consen 626 DYEEKGEEYLKEH 638 (645)
T ss_pred hhhhhhHHHHHHH
Confidence 9999999988753
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=3e-48 Score=334.03 Aligned_cols=325 Identities=40% Similarity=0.694 Sum_probs=284.5
Q ss_pred CCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccc
Q 020045 4 MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 83 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 83 (332)
....++++|++|+. ...+.+.+|+++|.+.||+.++++|...+.+.|+..|+++..++++|++++++.|+.+.+++||.
T Consensus 54 ~~dldf~ig~eal~-~~~ysl~ypiRhg~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEs 132 (415)
T KOG0678|consen 54 TEDLDFFIGDEALD-ATTYSLKYPIRHGQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFES 132 (415)
T ss_pred ccccceecccHHHh-hcccccccceeccccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhh
Confidence 45678999999999 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeechhhhhhccC--------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 84 FNTPAMYVAIQAVLSLYASG--------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 84 ~~~~~v~~~~~~~~a~~~~g--------~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
|+++.+++.-++++|+-+.- .-||+|+|.|.+.|+|.||.+|+++-++...+|+.|++++.++.++|+.++.
T Consensus 133 fnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~ 212 (415)
T KOG0678|consen 133 FNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREV 212 (415)
T ss_pred ccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCC
Confidence 99999999999988877653 3689999999999999999999999999999999999999999999998888
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCc-cceE---ECCCC--ceEeeCCccccccccCCCCccCCCcC-
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV-EKSY---ELPDG--QVITIGAERFRCPEVLFQPSMIGMEA- 228 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~-~~~~---~lp~~--~~i~i~~~~~~~~E~lf~p~~~~~~~- 228 (332)
.+......+.++.+|+++||++.|+.++..+....+.. .+.| ..-.+ ..++++.+||..||++|+|.....+.
T Consensus 213 ~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~ 292 (415)
T KOG0678|consen 213 GIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFL 292 (415)
T ss_pred CCChHHhhhhhHHHHhhhcccCcHHHHHHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccC
Confidence 88777788999999999999999998888766543321 1111 11122 34667899999999999998765444
Q ss_pred CChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCC--------------CCceEEEECCCCCcc
Q 020045 229 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP--------------SSMKIKVVAPPERKY 294 (332)
Q Consensus 229 ~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~--------------~~~~v~v~~~~~~~~ 294 (332)
..|++.+...|++||+|.|+.|++||++.||.+..++|..|++++++.+.. ....++++.+.-.++
T Consensus 293 ~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~ 372 (415)
T KOG0678|consen 293 TPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRT 372 (415)
T ss_pred cchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhc
Confidence 578899999999999999999999999999999999999999998876542 122466677777799
Q ss_pred ccchhhHHhhcccccccccccHHHHhhcCCccccc
Q 020045 295 SVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHR 329 (332)
Q Consensus 295 ~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~ 329 (332)
++|-|++++++.+.|-..+=||++|+|+|++|++.
T Consensus 373 avwfggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 373 AVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred ceeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence 99999999999999999999999999999999764
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-40 Score=296.62 Aligned_cols=313 Identities=20% Similarity=0.388 Sum_probs=241.2
Q ss_pred CceeeeccccCCCCCC----------HHHHHHHHHHHhhhhcCCCC---CCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 20 GILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAP---EEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 20 ~~~~~~~p~~~g~i~d----------~~~~~~~l~~~~~~~l~~~~---~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
..|.+++|+++|..+- .+++.++|+|++.+.|++++ .++.+|+++|....+.+.+.++.++|-+|+|
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 3689999999998853 47889999999999999987 4689999999999999999999999999999
Q ss_pred CeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCc-----cchh
Q 020045 87 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF-----TTTA 161 (332)
Q Consensus 87 ~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~-----~~~~ 161 (332)
.++.++++++||+|++|.+++||||||++.|+|+||.||..++++...+++||++|++.|..+|.+.++.+ .+..
T Consensus 257 ~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~ 336 (618)
T KOG0797|consen 257 NSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPI 336 (618)
T ss_pred ceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877754 3456
Q ss_pred HHHHHHHHHHHcccccccHHHH-HHHh--ccC----------------------------------CCccceEECCCCc-
Q 020045 162 EREIVRDMKEKLAYIALDYEQE-LETA--KTS----------------------------------SAVEKSYELPDGQ- 203 (332)
Q Consensus 162 ~~~~~~~ik~~~~~v~~~~~~~-~~~~--~~~----------------------------------~~~~~~~~lp~~~- 203 (332)
++.+++++|+++|......... ...+ .++ ......+.+||-+
T Consensus 337 d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d 416 (618)
T KOG0797|consen 337 DWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDRED 416 (618)
T ss_pred cHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCccc
Confidence 7889999999999775421100 0000 000 0001112222100
Q ss_pred ----------------------------eEeeC-CccccccccCCCCcc---------------C--------------C
Q 020045 204 ----------------------------VITIG-AERFRCPEVLFQPSM---------------I--------------G 225 (332)
Q Consensus 204 ----------------------------~i~i~-~~~~~~~E~lf~p~~---------------~--------------~ 225 (332)
.+.+. ..|-..||..-.+.. . -
T Consensus 417 ~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~ 496 (618)
T KOG0797|consen 417 LFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLY 496 (618)
T ss_pred ccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhccccee
Confidence 00000 000011111111110 0 0
Q ss_pred CcCC----ChHHHHHHHHhcC-CHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCC----ceEEEECCC---CCc
Q 020045 226 MEAA----GIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS----MKIKVVAPP---ERK 293 (332)
Q Consensus 226 ~~~~----~l~~~i~~~i~~~-~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~----~~v~v~~~~---~~~ 293 (332)
.... .+.+.|..+|..+ ..|.+++|.+.|.++||....||+.+.|++.+....|.. ..|.|+.+| ||+
T Consensus 497 ~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~ 576 (618)
T KOG0797|consen 497 ESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQ 576 (618)
T ss_pred ccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCch
Confidence 0112 3446688888766 578999999999999999999999999999998777652 247777665 899
Q ss_pred cccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 020045 294 YSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332 (332)
Q Consensus 294 ~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~k~~ 332 (332)
+-+|+||+|+|.+..-.+.||++.||+-+|.++++.||.
T Consensus 577 ~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 577 FVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred heEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 999999999999999999999999999999999999873
No 17
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=7.1e-34 Score=261.60 Aligned_cols=272 Identities=16% Similarity=0.231 Sum_probs=209.8
Q ss_pred cceeeccccccc----cCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCC-CcEEEeeCCCCCHHhHHHHhhhcc
Q 020045 7 KDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMF 81 (332)
Q Consensus 7 ~~~~vG~~a~~~----~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~-~~vvl~~~~~~~~~~~~~l~~~lf 81 (332)
+.++||++|.++ .....+++|+++|.|.||+..+.+|+|++.+.+...... .++++++|+.++...|+. ++.+|
T Consensus 43 ~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~ 121 (333)
T TIGR00904 43 SILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESA 121 (333)
T ss_pred eEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHH
Confidence 448899999986 367889999999999999999999999997766543222 269999999999998887 55578
Q ss_pred cccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 82 ETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
+.++++.+.++++|+||++++|. .+++|||+|+++|+++++ .+|..... ..++||+++++.|.+++..+.
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~- 197 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY- 197 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999987 679999999999999999 67666543 348999999999999887532
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHH
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETT 235 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i 235 (332)
.. ..+.+.++++|+++|++..+..++.. ... ......+.+|++. .++.+ .+.|++|.| ..++.+.|
T Consensus 198 ~~--~~~~~~ae~lK~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~--~i~~~--~~~e~i~~~------~~~i~~~i 263 (333)
T TIGR00904 198 NL--LIGEQTAERIKIEIGSAYPLNDEPRK-MEV-RGRDLVTGLPRTI--EITSV--EVREALQEP------VNQIVEAV 263 (333)
T ss_pred cc--cCCHHHHHHHHHHHhccccccccccc-eee-cCccccCCCCeEE--EECHH--HHHHHHHHH------HHHHHHHH
Confidence 11 22456799999999987654211100 000 0011123445443 33322 566888877 34588999
Q ss_pred HHHHhcCCHHHHHHHhc-CcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 236 YNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 236 ~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
.+++.+++.+.+..+++ +|+||||+|++||+.+||++++. +++....+|..++-.||++++.
T Consensus 264 ~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~--------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 264 KRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETG--------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHC--------CCceecCChHHHHHHHHHHHHh
Confidence 99999999999989986 79999999999999999999983 2344456788999999999864
No 18
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.1e-33 Score=260.78 Aligned_cols=274 Identities=18% Similarity=0.266 Sum_probs=210.5
Q ss_pred Ccceeeccccccc----cCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCC-CCCcEEEeeCCCCCHHhHHHHhhhc
Q 020045 6 QKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIM 80 (332)
Q Consensus 6 ~~~~~vG~~a~~~----~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~-~~~~vvl~~~~~~~~~~~~~l~~~l 80 (332)
.+.++||++|++. .....+++|+++|.|.||+..+.+|+|++++.+...+ ...++++++|+.++...|+.+.+ +
T Consensus 44 ~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~ 122 (335)
T PRK13930 44 GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-A 122 (335)
T ss_pred CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-H
Confidence 3568999999875 3457899999999999999999999999955444323 36789999999999888887777 6
Q ss_pred ccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 81 FETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 81 fe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
||.++++.++++++|+||++++|. .+++|||+|+++|+++|+.+|.++. ....++||+++++.+.+++..+ +
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~-~ 199 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRK-Y 199 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHH-h
Confidence 899999999999999999999987 5789999999999999999998875 3558999999999999998764 2
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHH
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETT 235 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i 235 (332)
.+. ...+.++++|+++|++..+...+ .... ......+.+|+ .+.++.+++ .|++|.| ..++.+.|
T Consensus 200 ~~~--~~~~~ae~~K~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i 264 (335)
T PRK13930 200 NLL--IGERTAEEIKIEIGSAYPLDEEE--SMEV-RGRDLVTGLPK--TIEISSEEV--REALAEP------LQQIVEAV 264 (335)
T ss_pred CCC--CCHHHHHHHHHHhhcCcCCCCCc--eEEE-ECccCCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHH
Confidence 221 23467999999999887542211 0000 00000111222 344554544 3677765 24588999
Q ss_pred HHHHhcCCHHHHHHHhcC-cccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 236 YNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 236 ~~~i~~~~~~~r~~l~~n-Ivl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.++|.+++.+.+..+++| |+||||+|++|||.+||++++.. + +....+|..++-.||++++.-
T Consensus 265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~------~--v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGL------P--VHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC------C--ceecCCHHHHHHHHHHHHHhC
Confidence 999999999999999987 99999999999999999999841 2 333446788999999998743
No 19
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=7.8e-33 Score=254.35 Aligned_cols=267 Identities=17% Similarity=0.335 Sum_probs=206.8
Q ss_pred ceeecccccccc----CceeeeccccCCCCCCHHHHHHHHHHHhhh---hcCCCCCCCcEEEeeCCCCCHHhHHHHhhhc
Q 020045 8 DAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIM 80 (332)
Q Consensus 8 ~~~vG~~a~~~~----~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~---~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~l 80 (332)
-++||++|+++. ....+.+|+++|.|.||+..+.+|++++.+ .++.++...++++++|+.++..+|+.+.+ +
T Consensus 42 ~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a 120 (335)
T PRK13929 42 VLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-A 120 (335)
T ss_pred EEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-H
Confidence 378999999863 567888999999999999999999999863 56666656789999999999999999999 7
Q ss_pred ccccCCCeEEEeechhhhhhccC-----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 81 FETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 81 fe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
|+.++++.+.++++|+||++++| ..+++|||+|+++|+++++..|..+.. ...++||+++++.|.+++..+ +
T Consensus 121 ~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~--~~~~~GG~~id~~l~~~l~~~-~ 197 (335)
T PRK13929 121 VKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC--HSIRIGGDQLDEDIVSFVRKK-Y 197 (335)
T ss_pred HHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe--cCcCCHHHHHHHHHHHHHHHH-h
Confidence 89999999999999999999997 467999999999999999944444332 336899999999999998752 2
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCcccc--ccccCCCCccCCCcCCChHH
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFR--CPEVLFQPSMIGMEAAGIHE 233 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~--~~E~lf~p~~~~~~~~~l~~ 233 (332)
.+. .+...+|++|+++|++..+..++.... ......+.+| ..+.++.+++. ++|.+|+ +.+
T Consensus 198 ~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v---~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~ 260 (335)
T PRK13929 198 NLL--IGERTAEQVKMEIGYALIEHEPETMEV---RGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILE 260 (335)
T ss_pred CcC--cCHHHHHHHHHHHcCCCCCCCCceEEE---eCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHH
Confidence 222 234689999999998864421110000 0000011122 34566655554 4566654 899
Q ss_pred HHHHHHhcCCHHHHHHHhc-CcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHh
Q 020045 234 TTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 303 (332)
Q Consensus 234 ~i~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 303 (332)
.|.++|.+++.+.+..+++ +|+||||+|++|||.+++++++.. +++ ...+|..++-.|+..+
T Consensus 261 ~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~------~v~--~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 261 AIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV------PVH--VAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC------Cce--eCCCHHHHHHHHHHHH
Confidence 9999999999999989998 799999999999999999999942 333 3457788999998776
No 20
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=6.4e-32 Score=248.94 Aligned_cols=271 Identities=17% Similarity=0.246 Sum_probs=202.4
Q ss_pred cceeeccccccc----cCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCC-cEEEeeCCCCCHHhHHHHhhhcc
Q 020045 7 KDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMF 81 (332)
Q Consensus 7 ~~~~vG~~a~~~----~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lf 81 (332)
+.++||++|.++ .....+.+|+++|.|.||+..+.+|++++.+.+.. +.++ .+++++|.. ....++++++.+|
T Consensus 42 ~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~-~~~~~r~~~~~a~ 119 (334)
T PRK13927 42 KVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPSG-ITEVERRAVRESA 119 (334)
T ss_pred eEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCC-CCHHHHHHHHHHH
Confidence 457999999876 35688999999999999999999999999877766 5555 566666655 5555556788888
Q ss_pred cccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 82 ETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
+.++++.+.++++|+||++++|. .+++|||+|+++|+++|+ .+|...... .++||+++|+.|.+++..+.
T Consensus 120 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~- 195 (334)
T PRK13927 120 LGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY- 195 (334)
T ss_pred HHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999986 467999999999999999 666655433 58999999999999886432
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHH
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETT 235 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i 235 (332)
.+. .+.+.++++|+++|++..+.... .... ......+.+|+ .+.++.+++ .|++|.| ..++.+.|
T Consensus 196 ~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i 260 (334)
T PRK13927 196 NLL--IGERTAERIKIEIGSAYPGDEVL--EMEV-RGRDLVTGLPK--TITISSNEI--REALQEP------LSAIVEAV 260 (334)
T ss_pred CcC--cCHHHHHHHHHHhhccCCCCCCc--eEEE-eCcccCCCCCe--EEEECHHHH--HHHHHHH------HHHHHHHH
Confidence 221 23567999999999876431100 0000 00000011221 345555555 3667665 24588999
Q ss_pred HHHHhcCCHHHHHHHhc-CcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 236 YNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 236 ~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.++|.+++.+.+..+++ +|+||||+|++||+.++|++++. .++ ....+|..++..||++++.-
T Consensus 261 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~------~~v--~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 261 KVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG------LPV--HVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC------CCc--EecCCHHHHHHHHHHHHHhh
Confidence 99999999888888887 59999999999999999999983 233 33456788999999998743
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=4.8e-30 Score=231.41 Aligned_cols=270 Identities=18% Similarity=0.269 Sum_probs=198.9
Q ss_pred Ccceeeccccccc----cCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCC-CCCCCcEEEeeCCCCCHHhHHHHhhhc
Q 020045 6 QKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIM 80 (332)
Q Consensus 6 ~~~~~vG~~a~~~----~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~-~~~~~~vvl~~~~~~~~~~~~~l~~~l 80 (332)
.+-+-+|++|..+ +....+.+|+++|+|.|++..+.+++|++++..+. ......++++.|...+..+|+.+.+.+
T Consensus 37 ~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~ 116 (326)
T PF06723_consen 37 GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA 116 (326)
T ss_dssp --EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4566799999886 46789999999999999999999999999877764 335567999999999999999999998
Q ss_pred ccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 81 FETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 81 fe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
...|+..|+++++|+|||++.|. ...+|||||+++|+|+.+..|.++.+ ..+++||+++++.+.+++++++
T Consensus 117 -~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y- 192 (326)
T PF06723_consen 117 -RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY- 192 (326)
T ss_dssp -HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH-
T ss_pred -HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh-
Confidence 55999999999999999999984 47899999999999999999988764 5689999999999999998755
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEe--eC-CccccccccCCCCccCCCcCCChH
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVIT--IG-AERFRCPEVLFQPSMIGMEAAGIH 232 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~--i~-~~~~~~~E~lf~p~~~~~~~~~l~ 232 (332)
++ ......+|++|++.+++...-.+. ........+-+|.+.. +. .+-..+.+..+.+ +.
T Consensus 193 ~l--~Ig~~tAE~iK~~~g~~~~~~~~~-------~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~ 254 (326)
T PF06723_consen 193 NL--LIGERTAEKIKIEIGSASPPEEEE-------SMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IV 254 (326)
T ss_dssp SE--E--HHHHHHHHHHH-BSS--HHHH-------EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HH
T ss_pred Cc--ccCHHHHHHHHHhcceeeccCCCc-------eEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HH
Confidence 23 246788999999999886432211 1112233444554433 32 2334444444444 89
Q ss_pred HHHHHHHhcCCHHHHHHHhc-CcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 233 ETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 233 ~~i~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
+.|.+.+.++|+++..++++ +|+||||+|+++||.++|++++ .++|...++|.+++..|+..+..
T Consensus 255 ~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 255 EAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999999999999998885 5999999999999999999999 34555567889999999877654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.96 E-value=5.7e-29 Score=229.23 Aligned_cols=272 Identities=17% Similarity=0.301 Sum_probs=197.8
Q ss_pred cceeeccccccc--c--CceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCc-EEEeeCCCCCHHhHHHHhhhcc
Q 020045 7 KDAYVGDEAQSK--R--GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP-VLLTEAPLNPKANREKMTQIMF 81 (332)
Q Consensus 7 ~~~~vG~~a~~~--~--~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~-vvl~~~~~~~~~~~~~l~~~lf 81 (332)
+-+.+|++|.++ + ....+.+|+++|.|.||+..+.+|+|++.+...-.+..+| +++++|..++.. +++.++.++
T Consensus 40 ~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~-~r~~~~~a~ 118 (336)
T PRK13928 40 KVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSV-EKRAVREAA 118 (336)
T ss_pred eEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHH-HHHHHHHHH
Confidence 346899999876 2 4577889999999999999999999998443222244566 888887776655 555666667
Q ss_pred cccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCC
Q 020045 82 ETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS 156 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~ 156 (332)
+.++++.+.++++|+||++++|. .+++|+|+|+++|+|+++.+|..+... ..++||+++|+.+.+.+..+. .
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~-~ 195 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKY-K 195 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHh-c
Confidence 99999999999999999999986 679999999999999999999776543 579999999999999887432 2
Q ss_pred ccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHH
Q 020045 157 FTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTY 236 (332)
Q Consensus 157 ~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~ 236 (332)
+. .....++++|++++.+..+.... .... ........+|. .+.++.+++. |+++.+ ...+.+.|.
T Consensus 196 ~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v-~g~~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~ 260 (336)
T PRK13928 196 LL--IGERTAEEIKIKIGTAFPGAREE--EMEI-RGRDLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVK 260 (336)
T ss_pred hh--cCHHHHHHHHHHhcccccccCCc--EEEE-ecccccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHH
Confidence 21 23457999999988764321000 0000 00000001111 2344444332 444433 234888889
Q ss_pred HHHhcCCHHHHHHHhc-CcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 237 NSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 237 ~~i~~~~~~~r~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
+++.+++.+.+...++ +|+||||+|++||+.+++++++.. +++ ...+|..++..||++++.
T Consensus 261 ~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~------~v~--~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 261 SVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV------PVY--IAEDPISCVALGTGKMLE 322 (336)
T ss_pred HHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC------Cce--ecCCHHHHHHHHHHHHHh
Confidence 9999999888888887 799999999999999999999842 233 345778999999999864
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.91 E-value=2.3e-24 Score=188.04 Aligned_cols=271 Identities=18% Similarity=0.262 Sum_probs=201.8
Q ss_pred cceeeccccccc----cCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCC--CCCCcEEEeeCCCCCHHhHHHHhhhc
Q 020045 7 KDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIM 80 (332)
Q Consensus 7 ~~~~vG~~a~~~----~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~--~~~~~vvl~~~~~~~~~~~~~l~~~l 80 (332)
+-+.||+||+.+ ..+....+|+++|+|.|++..+.+++|++++..+-. ...-.++++.|...+..+|+.+.+.+
T Consensus 45 ~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~ 124 (342)
T COG1077 45 VVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA 124 (342)
T ss_pred eEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH
Confidence 457899999987 467899999999999999999999999986544322 23345888899999999999998887
Q ss_pred ccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 81 FETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 81 fe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
+..+...|+++++|.+|+++.|. +..+|||||+++|.|+.+..|-.+.+ .+..+||+.+++.+...+++++.
T Consensus 125 -~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~yvr~~~n 201 (342)
T COG1077 125 -ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVYVRKKYN 201 (342)
T ss_pred -HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHHHHHHhC
Confidence 66999999999999999999985 45999999999999999988877765 34679999999999999987433
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCc--eEeeCCccccccccCCCCccCCCcCCChHH
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQ--VITIGAERFRCPEVLFQPSMIGMEAAGIHE 233 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~ 233 (332)
-. .....+|+||.+.+++..+...+..+. ..+.-.+-.|- .+.+..+ .+.|+|-.+ ...|.+
T Consensus 202 l~---IGe~taE~iK~eiG~a~~~~~~~~~~~-----eV~Grdl~~GlPk~i~i~s~--ev~eal~~~------v~~Ive 265 (342)
T COG1077 202 LL---IGERTAEKIKIEIGSAYPEEEDEELEM-----EVRGRDLVTGLPKTITINSE--EIAEALEEP------LNGIVE 265 (342)
T ss_pred ee---ecHHHHHHHHHHhcccccccCCcccee-----eEEeeecccCCCeeEEEcHH--HHHHHHHHH------HHHHHH
Confidence 32 345679999999998865321100000 00111111121 1222111 111222111 234888
Q ss_pred HHHHHHhcCCHHHHHHHhcC-cccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhh
Q 020045 234 TTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 234 ~i~~~i~~~~~~~r~~l~~n-Ivl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
.+...+.++|+++-....++ |++|||+|++.||++.+.++. .+.+...++|-.++.+|+....
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et--------~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET--------GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc--------CCeEEECCChHHHHHhccchhh
Confidence 88999999999999999988 999999999999999999886 4566666788888888866543
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.85 E-value=2e-20 Score=163.66 Aligned_cols=210 Identities=16% Similarity=0.183 Sum_probs=159.2
Q ss_pred eeeccccCCCCCCHHHHHHHHHHHhhh---hcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhh
Q 020045 23 TLKYPIEHGIVSNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 99 (332)
Q Consensus 23 ~~~~p~~~g~i~d~~~~~~~l~~~~~~---~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~ 99 (332)
.-..|+.+|.|.|++..+.+++++... .++ ..-..+++++|...+..+|+.+.+.+ +..|+..+.++++|+|++
T Consensus 26 ~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa 102 (239)
T TIGR02529 26 QFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAA 102 (239)
T ss_pred cccccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHH
Confidence 456799999999999999999999742 332 23468999999999999998777665 779999999999999999
Q ss_pred hccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHccccccc
Q 020045 100 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALD 179 (332)
Q Consensus 100 ~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~ 179 (332)
.+++....+|+|+|+++|+++.+.+|.++. ....++||+++++.+.+.+. .+...+|++|.+...-
T Consensus 103 ~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~~--- 168 (239)
T TIGR02529 103 AVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKDE--- 168 (239)
T ss_pred HHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCCH---
Confidence 999888889999999999999999998775 35678999999999876653 2456788888775421
Q ss_pred HHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccC
Q 020045 180 YEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 259 (332)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG 259 (332)
.++. .+.+.+. ..+.+.+.+++.+.++ +.|+||||
T Consensus 169 --~~~~---------------------------~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG 203 (239)
T TIGR02529 169 --EEIF---------------------------PVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGG 203 (239)
T ss_pred --HHHH---------------------------HHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECc
Confidence 1100 0000111 1155555566654443 37999999
Q ss_pred ccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHH
Q 020045 260 STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI 302 (332)
Q Consensus 260 ~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 302 (332)
+|++||+.+.+++.+.. ++..+.+|.+++..|+++
T Consensus 204 ~a~ipgl~e~l~~~lg~--------~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 204 ACSFSGFADVFEKQLGL--------NVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hhcchhHHHHHHHHhCC--------CcccCCCCCeehhheeec
Confidence 99999999999998832 233467889999999864
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.76 E-value=1.4e-17 Score=148.28 Aligned_cols=213 Identities=15% Similarity=0.150 Sum_probs=156.1
Q ss_pred eeeeccccCCCCCCHHHHHHHHHHHhhh---hcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhh
Q 020045 22 LTLKYPIEHGIVSNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 98 (332)
Q Consensus 22 ~~~~~p~~~g~i~d~~~~~~~l~~~~~~---~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a 98 (332)
...+.++++|.|.|++.....++++... .++.+ -..++++.|...+...+..+.+. .+..|++-..+++++.++
T Consensus 52 ~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~-~~~aGl~~~~ii~e~~A~ 128 (267)
T PRK15080 52 LEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINV-VESAGLEVTHVLDEPTAA 128 (267)
T ss_pred eccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHH-HHHcCCceEEEechHHHH
Confidence 4567799999999999999998888742 34443 35677788888877777777744 588999999999999999
Q ss_pred hhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccc
Q 020045 99 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIAL 178 (332)
Q Consensus 99 ~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~ 178 (332)
+.+++...++|||||+++|+++.+.+|.++.. ...++||+++++.+.+.+. .+.+.+|++|.+...
T Consensus 129 a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~---------i~~~eAE~lK~~~~~--- 194 (267)
T PRK15080 129 AAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG---------ISFEEAEQYKRDPKH--- 194 (267)
T ss_pred HHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------CCHHHHHHHHhccCC---
Confidence 99888778999999999999999999987754 4579999999999987763 134567888876421
Q ss_pred cHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCccccc
Q 020045 179 DYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 258 (332)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~G 258 (332)
.+++. .+.+.++. .+.+.+.+.+.+. -.+.|+|||
T Consensus 195 --~~~~~---------------------------~ii~~~~~---------~i~~~i~~~l~~~-------~~~~IvLtG 229 (267)
T PRK15080 195 --HKEIF---------------------------PVVKPVVE---------KMASIVARHIEGQ-------DVEDIYLVG 229 (267)
T ss_pred --HHHHH---------------------------HHHHHHHH---------HHHHHHHHHHhcC-------CCCEEEEEC
Confidence 00000 00001111 1444444444433 235899999
Q ss_pred CccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhh
Q 020045 259 GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 259 G~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
|+|++||+.+.+++.+.. + +..+++|.+++-.|+++|+
T Consensus 230 G~s~lpgl~e~l~~~lg~------~--v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 230 GTCCLPGFEEVFEKQTGL------P--VHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccchhHHHHHHHHhCC------C--cccCCCchHHHHHHHHhhC
Confidence 999999999999999832 2 2335688999999998864
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.56 E-value=4.3e-14 Score=140.19 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceE
Q 020045 36 WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTG 107 (332)
Q Consensus 36 ~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~ 107 (332)
.+....+++++.. ..++. .-..+|+++|..++..+|+.+.+.+ +..|+..+.++++|.||++++|. .+.
T Consensus 113 eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~v 189 (621)
T CHL00094 113 EEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETI 189 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEE
Confidence 3455566666543 22332 2356899999999999998877765 78999999999999999999874 468
Q ss_pred EEEeCCCCceEEEEeeCCee---cCcceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcc
Q 020045 108 IVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLA 174 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~~g~~---~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~ 174 (332)
+|+|+|+++++|+.+..+.. +..+....++||+++++.|.+++..+ +.++..... ...++++|+.++
T Consensus 190 lV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS 269 (621)
T CHL00094 190 LVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELS 269 (621)
T ss_pred EEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998854422 22233346899999999998876532 222211100 123455555543
Q ss_pred cccccHHHHHHHhccCCCccceEECC------CC-c--eEeeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCH
Q 020045 175 YIALDYEQELETAKTSSAVEKSYELP------DG-Q--VITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDV 244 (332)
Q Consensus 175 ~v~~~~~~~~~~~~~~~~~~~~~~lp------~~-~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~ 244 (332)
... ...+.+| +| . ...+...+|. ..+.++.. +.+.|.+++.+..
T Consensus 270 ~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~- 323 (621)
T CHL00094 270 NLT----------------QTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINR---------CRIPVENALKDAK- 323 (621)
T ss_pred CCC----------------ceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHcC-
Confidence 111 1112121 01 1 1223333221 11112111 3333444444332
Q ss_pred HHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 245 DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 245 ~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+...-++.|+|+||+|++|++.+.+++.+.. .+....+|..++..||+++|..
T Consensus 324 -~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 324 -LDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred -CChhhCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHHH
Confidence 2233457899999999999999999887642 1223346788999999999874
No 27
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.55 E-value=6.4e-14 Score=137.56 Aligned_cols=224 Identities=17% Similarity=0.207 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEE
Q 020045 37 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGI 108 (332)
Q Consensus 37 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~l 108 (332)
+....+++++-. ..++. .-..+|+++|..++...|+.+.+.+ +..|++.+.++++|.||++++|. .+.+
T Consensus 120 ei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 196 (595)
T PRK01433 120 EIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYL 196 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEEE
Confidence 444455555532 23332 2357999999999999998877774 78999999999999999999874 3579
Q ss_pred EEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHHHHhcCCCccch-hHHHHHHHHHHHcccccccHHHHH
Q 020045 109 VLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTERGYSFTTT-AEREIVRDMKEKLAYIALDYEQEL 184 (332)
Q Consensus 109 VVDiG~~~t~v~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~-~~~~~~~~ik~~~~~v~~~~~~~~ 184 (332)
|+|+|+++++|+.+. +|.. +..+.....+||+++++.|.+++..+. +.... .....+++.|+.+..-.
T Consensus 197 V~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~~~------- 268 (595)
T PRK01433 197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTYKD------- 268 (595)
T ss_pred EEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCCc-------
Confidence 999999999999874 4422 222233457999999999998886532 22111 12234555565443211
Q ss_pred HHhccCCCccceEECCCCceEeeCCccc-cccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCC
Q 020045 185 ETAKTSSAVEKSYELPDGQVITIGAERF-RCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF 263 (332)
Q Consensus 185 ~~~~~~~~~~~~~~lp~~~~i~i~~~~~-~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i 263 (332)
.+.. ..+.+..+.| ...+.+|.. +.+.|.+++.... ..-++.|+|+||+|++
T Consensus 269 -----------~~~~---~~~~itr~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssri 321 (595)
T PRK01433 269 -----------SFNN---DNISINKQTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRI 321 (595)
T ss_pred -----------cccc---ceEEEcHHHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccC
Confidence 0111 1344444433 122223222 4445555554443 1225789999999999
Q ss_pred cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 264 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 264 ~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
|.+.+.+.+.+.. ++....+|..++..||+++|..
T Consensus 322 P~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 322 PLIKDELYKAFKV--------DILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred hhHHHHHHHHhCC--------CceecCCchHHHHHHHHHHHHH
Confidence 9998888876631 2334557889999999999875
No 28
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.52 E-value=1.1e-13 Score=136.44 Aligned_cols=234 Identities=20% Similarity=0.210 Sum_probs=144.1
Q ss_pred HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEE
Q 020045 37 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGI 108 (332)
Q Consensus 37 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~l 108 (332)
+....+++++.. +.++.+ -..+|+++|..++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+.+
T Consensus 108 ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 184 (599)
T TIGR01991 108 EVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATKDAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYA 184 (599)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEE
Confidence 444455555532 334322 367999999999999999877775 88999999999999999998863 4689
Q ss_pred EEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHHHHhc-CCCccchhH-----HHHHHHHHHHccccccc
Q 020045 109 VLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAE-----REIVRDMKEKLAYIALD 179 (332)
Q Consensus 109 VVDiG~~~t~v~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~ 179 (332)
|+|+|+++++|+.+. +|.. +..+.....+||+++++.|.+++..+ +.+...... ...+++.|+.++.-
T Consensus 185 V~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--- 261 (599)
T TIGR01991 185 VYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKEALTDA--- 261 (599)
T ss_pred EEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence 999999999999874 3322 22222335899999999999888643 222211110 11233333332210
Q ss_pred HHHHHHHhccCCCccceEECCCCce--EeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccc
Q 020045 180 YEQELETAKTSSAVEKSYELPDGQV--ITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 257 (332)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~lp~~~~--i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~ 257 (332)
......+.. +|.. +.+..+.| |.++.|. ...+.+.|.+++.... +...-.+.|+|+
T Consensus 262 -----------~~~~i~i~~-~g~~~~~~itr~ef---e~l~~~l-----l~~i~~~i~~~L~~a~--~~~~~id~ViLv 319 (599)
T TIGR01991 262 -----------ESVEVDFTL-DGKDFKGKLTRDEF---EALIQPL-----VQKTLSICRRALRDAG--LSVEEIKGVVLV 319 (599)
T ss_pred -----------ceEEEEEEE-CCcEEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CChhhCCEEEEE
Confidence 111111222 2322 33333332 2223330 0114444455554432 122335789999
Q ss_pred cCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 258 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 258 GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
||+|++|++.+.+++.+.. .+....+|..++..||+++|..
T Consensus 320 GGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 320 GGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred CCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999877632 1223457889999999999865
No 29
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.52 E-value=1.9e-13 Score=136.33 Aligned_cols=233 Identities=17% Similarity=0.202 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceE
Q 020045 36 WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTG 107 (332)
Q Consensus 36 ~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~ 107 (332)
.+....+++++.. +.++ ..-..+|+++|..++..+|+.+.+.+ +..|+..+.++++|.||++++|. .+-
T Consensus 150 eei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~v 226 (673)
T PLN03184 150 EEISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQRTATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETI 226 (673)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEE
Confidence 3455566666543 2333 22367999999999999998777665 88999999999999999999874 468
Q ss_pred EEEeCCCCceEEEEeeCCee---cCcceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcc
Q 020045 108 IVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLA 174 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~~g~~---~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~ 174 (332)
+|+|+|+++++|+.+.-+.. +..+.....+||+++++.|.+++..+ +.+...... ...+|+.|+.+.
T Consensus 227 lV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS 306 (673)
T PLN03184 227 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELS 306 (673)
T ss_pred EEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988743321 22223346899999999998877542 111111000 122444444433
Q ss_pred cccccHHHHHHHhccCCCccceEECC------CC-ceE--eeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCH
Q 020045 175 YIALDYEQELETAKTSSAVEKSYELP------DG-QVI--TIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDV 244 (332)
Q Consensus 175 ~v~~~~~~~~~~~~~~~~~~~~~~lp------~~-~~i--~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~ 244 (332)
... ...+.++ +| ..+ .+..+.|. ..+.+++. +.+.|.+++.....
T Consensus 307 ~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~~ 361 (673)
T PLN03184 307 SLT----------------QTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDR---------CKTPVENALRDAKL 361 (673)
T ss_pred CCC----------------cceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC
Confidence 211 1111111 11 122 33333321 12222222 44445555544432
Q ss_pred HHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 245 DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 245 ~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+ ..-++.|+|+||+|++|.+.+++++.+... +....+|..++..||+++|..
T Consensus 362 ~--~~dId~ViLvGGssriP~V~~~i~~~fg~~--------~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 362 S--FKDIDEVILVGGSTRIPAVQELVKKLTGKD--------PNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred C--hhHccEEEEECCccccHHHHHHHHHHhCCC--------cccccCcchHHHHHHHHHHHH
Confidence 2 233478999999999999999988776321 122346788999999999864
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.52 E-value=1.5e-13 Score=136.98 Aligned_cols=214 Identities=18% Similarity=0.242 Sum_probs=138.3
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-c
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 128 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~--~g~~-~ 128 (332)
-..+|+++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 467999999999999999887765 88999999999999999999974 4689999999999999874 5533 3
Q ss_pred CcceEEEcccHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHHHHcccccccHHHHHHHhccCCCccceEE
Q 020045 129 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 198 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (332)
..+.....+||+++++.|.+++..+ +.++.... . ...++++|+.++.- ....+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~----------------~~~~i~ 316 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSK----------------TQTEIN 316 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEE
Confidence 3333446899999999998877542 11221100 0 11244445443211 111111
Q ss_pred C----CC--C---ceEeeCCccc-cccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHH
Q 020045 199 L----PD--G---QVITIGAERF-RCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 268 (332)
Q Consensus 199 l----p~--~---~~i~i~~~~~-~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~e 268 (332)
+ .| | -.+.+..+.| ...+.+|.. +.+.|.+++.+.. +...-++.|+|+||+|++|++.+
T Consensus 317 i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~ 385 (663)
T PTZ00400 317 LPFITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSE 385 (663)
T ss_pred EEeeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHH
Confidence 1 11 1 1233433332 122223222 4455555655442 22333678999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 269 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 269 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.+++.+.. .+....+|..++..||+++|..
T Consensus 386 ~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 386 TVKKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 98877632 1223457788999999999864
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.52 E-value=2.6e-13 Score=128.62 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=133.4
Q ss_pred HHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHH
Q 020045 70 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 144 (332)
Q Consensus 70 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~ 144 (332)
....+.+.+ +++..|+....++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++. ...+++||+++++
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHHH
Confidence 344455666 4588999999999999999998753 3589999999999999999998775 4568999999999
Q ss_pred HHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCC--C-ceEeeCCccccccccCCCC
Q 020045 145 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--G-QVITIGAERFRCPEVLFQP 221 (332)
Q Consensus 145 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~--~-~~i~i~~~~~~~~E~lf~p 221 (332)
.+...+. ...+.+|++|.+++....+.. .....+.+++ + ....++. ....+++..
T Consensus 242 dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~~--~~l~~ii~~- 299 (420)
T PRK09472 242 DIAYAFG---------TPPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQR--QTLAEVIEP- 299 (420)
T ss_pred HHHHHhC---------cCHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEcH--HHHHHHHHH-
Confidence 9987663 245679999988775432210 0111222221 1 1111111 111111111
Q ss_pred ccCCCcCCChHHHHHHHHhcCCHHHHH-----HHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECC-------
Q 020045 222 SMIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP------- 289 (332)
Q Consensus 222 ~~~~~~~~~l~~~i~~~i~~~~~~~r~-----~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~------- 289 (332)
....|.+.|.+.+..++.++++ .+.+.||||||+|++||+.+.+++.+.. ++++..|
T Consensus 300 -----r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~ 368 (420)
T PRK09472 300 -----RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLT 368 (420)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCCh
Confidence 1112455666666666555443 3456699999999999999999988742 4455433
Q ss_pred ---CCCccccchhhHHhhcc
Q 020045 290 ---PERKYSVWIGGSILASL 306 (332)
Q Consensus 290 ---~~~~~~~w~Gasi~a~l 306 (332)
.+|.|++-.|...|+.-
T Consensus 369 ~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 369 DYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhcCCcHHHHHHHHHHHhhh
Confidence 36789999999888763
No 32
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.52 E-value=1.2e-13 Score=137.44 Aligned_cols=215 Identities=17% Similarity=0.222 Sum_probs=135.4
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCe---ec
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY---AL 128 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~---~~ 128 (332)
-..+|+++|..++...|+.+.+.+ +..|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+.-+. .+
T Consensus 133 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v 211 (627)
T PRK00290 133 VTEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEV 211 (627)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEE
Confidence 356999999999999999877665 78999999999999999998863 5699999999999998874431 12
Q ss_pred CcceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCccceEE
Q 020045 129 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 198 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (332)
..+....++||.++++.|.+++..+ +.++..... ...++++|+.++.- ....+.
T Consensus 212 la~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~ 275 (627)
T PRK00290 212 LSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEIN 275 (627)
T ss_pred EEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEE
Confidence 2223345799999999998876532 222211100 11234444443211 111111
Q ss_pred CC----C--C-c--eEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHH
Q 020045 199 LP----D--G-Q--VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 269 (332)
Q Consensus 199 lp----~--~-~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~er 269 (332)
++ | | . .+.+..+.| |.++.|- ...+.+.|.+++..... ...-++.|+|+||+|++|.+.++
T Consensus 276 i~~~~~d~~g~~~~~~~itR~~f---e~l~~~l-----~~~~~~~i~~~l~~a~~--~~~~id~ViLvGGssriP~v~~~ 345 (627)
T PRK00290 276 LPFITADASGPKHLEIKLTRAKF---EELTEDL-----VERTIEPCKQALKDAGL--SVSDIDEVILVGGSTRMPAVQEL 345 (627)
T ss_pred EeecccCCCCCeEEEEEECHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--ChhhCcEEEEECCcCCChHHHHH
Confidence 11 1 1 1 233443332 2222220 01144455555554332 22335789999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 270 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 270 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+++.+.. .+....+|..++..||+++|..
T Consensus 346 l~~~fg~--------~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 346 VKEFFGK--------EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred HHHHhCC--------CCCcCcCChHHHHHhHHHHHHH
Confidence 9877632 1223457788999999999864
No 33
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.51 E-value=1.4e-13 Score=136.08 Aligned_cols=231 Identities=19% Similarity=0.149 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEE
Q 020045 37 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGI 108 (332)
Q Consensus 37 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~l 108 (332)
+....+++++.. +.++. .-..+|+++|..++...|+.+.+. .+..|++.+.++++|.||+++++. .+-+
T Consensus 128 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 204 (616)
T PRK05183 128 EVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIA 204 (616)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEE
Confidence 344455555532 23332 235799999999999999877666 488999999999999999998764 3578
Q ss_pred EEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHHHHhc-CCCccchhH-----HHHHHHHHHHccccccc
Q 020045 109 VLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAE-----REIVRDMKEKLAYIALD 179 (332)
Q Consensus 109 VVDiG~~~t~v~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~ 179 (332)
|+|+|+++++|+.+. +|.. +..+.....+||+++++.|.+++..+ +.+...... ...+++.|+.++
T Consensus 205 V~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS----- 279 (616)
T PRK05183 205 VYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALS----- 279 (616)
T ss_pred EEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcC-----
Confidence 999999999999874 3321 22233345799999999998887653 222211100 112333333322
Q ss_pred HHHHHHHhccCCCccceEECCCCceEeeCCccc-cccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCccccc
Q 020045 180 YEQELETAKTSSAVEKSYELPDGQVITIGAERF-RCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 258 (332)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~-~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~G 258 (332)
......+.+++-. -.+..+.| ...+.++.. +.+.+.+++.... +...-++.|+|+|
T Consensus 280 -----------~~~~~~i~i~~~~-~~itr~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvG 336 (616)
T PRK05183 280 -----------DADSVEVSVALWQ-GEITREQFNALIAPLVKR---------TLLACRRALRDAG--VEADEVKEVVMVG 336 (616)
T ss_pred -----------CCceEEEEEecCC-CeEcHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCcccCCEEEEEC
Confidence 1111222222211 01222221 111222211 3344444444332 1122356799999
Q ss_pred CccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 259 GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 259 G~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
|+|++|.+.+.+++.+... +....+|..++..||+++|..
T Consensus 337 GssriP~v~~~l~~~fg~~--------~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 337 GSTRVPLVREAVGEFFGRT--------PLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred CcccChHHHHHHHHHhccC--------cCcCCCchHHHHHHHHHHHHH
Confidence 9999999999988766421 223457788999999999874
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.50 E-value=1.8e-13 Score=135.44 Aligned_cols=214 Identities=17% Similarity=0.248 Sum_probs=134.7
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC------ceEEEEeCCCCceEEEEeeC--Cee-c
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYE--GYA-L 128 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~t~lVVDiG~~~t~v~pv~~--g~~-~ 128 (332)
..+|+++|..++...|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+.- |.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 56999999999999999887764 77999999999999999998863 46899999999999988742 211 2
Q ss_pred CcceEEEcccHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHHHHcccccccHHHHHHHhccCCCccceEE
Q 020045 129 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 198 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (332)
..+.....+||.++++.|.+++..+ +.++.... . ...+++.|+.++.. ....+.
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~ 273 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSV----------------LSTEIN 273 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEE
Confidence 2223345799999999998776531 12221110 0 12244445443311 111111
Q ss_pred CC----C--C---ceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHH
Q 020045 199 LP----D--G---QVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 269 (332)
Q Consensus 199 lp----~--~---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~er 269 (332)
++ | | ..+.+..+.| |.++.|- ...+.+.|.+++.... +...-++.|+|+||+|++|++.+.
T Consensus 274 i~~~~~~~~g~~~~~~~itr~~f---e~l~~~l-----~~~~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~~ 343 (595)
T TIGR02350 274 LPFITADASGPKHLEMTLTRAKF---EELTADL-----VERTKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQEL 343 (595)
T ss_pred eeecccCCCCCeeEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHHH
Confidence 11 1 1 1233333332 2222220 0114444455554432 122335789999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 270 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 270 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+++.+.. .+....+|..++..||+++|..
T Consensus 344 i~~~f~~--------~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 344 VKDFFGK--------EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred HHHHhCC--------cccCCcCcHHHHHHHHHHHHHH
Confidence 8876632 2334557788999999999864
No 35
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.50 E-value=1.4e-13 Score=136.47 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=137.0
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-c
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 128 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~--~g~~-~ 128 (332)
-..+|+++|..++...|+.+.+.+ +..|+..+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 160 v~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 357999999999999998777665 88999999999999999999874 4689999999999999875 5633 3
Q ss_pred CcceEEEcccHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHHHHcccccccHHHHHHHhccCCCccceEE
Q 020045 129 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 198 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (332)
..+.....+||+++++.|.+++..+ +.++.... . ...+|+.|+.++.... .....++.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i 306 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFI 306 (657)
T ss_pred EEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeee
Confidence 3333346899999999988776531 22221100 0 1234445544432110 00011111
Q ss_pred CC--CC---ceEeeCCccc-cccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHH
Q 020045 199 LP--DG---QVITIGAERF-RCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK 272 (332)
Q Consensus 199 lp--~~---~~i~i~~~~~-~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~ 272 (332)
.. +| ..+.+..+.| ...+.++.. +.+.+.+++.... +...-++.|+|+||+|++|.+.+.+.+
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~ 375 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKK 375 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHH
Confidence 11 11 1234444333 122222222 3344444444332 223345689999999999999999887
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 273 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 273 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.+... .....+|..++..||+++|..
T Consensus 376 ~fg~~--------~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 376 FFQKD--------PFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred HhCCC--------ccccCCCchHHHHhHHHHHHH
Confidence 76421 123356788999999999874
No 36
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.49 E-value=2.5e-13 Score=135.02 Aligned_cols=213 Identities=17% Similarity=0.223 Sum_probs=132.8
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCe-ecC
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGY-ALP 129 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~--~g~-~~~ 129 (332)
..+|+++|..++..+|+.+.+.+ +..|+..+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|. .+.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 46999999999999998777665 88999999999999999999874 4689999999999999874 332 223
Q ss_pred cceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCccceEEC
Q 020045 130 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL 199 (332)
Q Consensus 130 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 199 (332)
.+.....+||.++++.|.+++..+ +.++..... ...++++|+.+... ....+.+
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~----------------~~~~i~i 278 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGV----------------SVTDISL 278 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEE
Confidence 333345799999999998776532 122211100 11234444443211 1111222
Q ss_pred C----C--C-c--eEeeCCccc-cccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHH
Q 020045 200 P----D--G-Q--VITIGAERF-RCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 269 (332)
Q Consensus 200 p----~--~-~--~i~i~~~~~-~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~er 269 (332)
| + + . ...+....| ..++.++.. +.+.|.+++... .+...-++.|+|+||+|++|.+.+.
T Consensus 279 ~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r---------~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~ 347 (668)
T PRK13410 279 PFITATEDGPKHIETRLDRKQFESLCGDLLDR---------LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQL 347 (668)
T ss_pred eeeecCCCCCeeEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHH
Confidence 1 1 1 1 122333322 112222221 334444444432 1223345689999999999988888
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 270 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 270 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+++.+.. .+....+|..++..||+++|..
T Consensus 348 l~~~fg~--------~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 348 VRTLIPR--------EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred HHHHcCC--------CcccCCCCchHHHHhHHHHHHh
Confidence 8765532 1223346788999999999875
No 37
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.49 E-value=2.4e-13 Score=135.38 Aligned_cols=220 Identities=16% Similarity=0.236 Sum_probs=135.1
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC------ceEEEEeCCCCceEEEEee--CCee-
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA- 127 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~t~lVVDiG~~~t~v~pv~--~g~~- 127 (332)
-..+|+++|+.++..+|+.+.+.+ +..|+..+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|..
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 366999999999999999877764 78999999999999999999874 3589999999999998763 2322
Q ss_pred cCcceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCccceE
Q 020045 128 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 197 (332)
Q Consensus 128 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (332)
+..+.....+||+++++.|.+++..+ +.++..... ...+++.|+.++.-.. .....++
T Consensus 212 V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~------------~~i~i~~ 279 (653)
T PRK13411 212 VKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLT------------TSINLPF 279 (653)
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc------------eEEEEee
Confidence 23333345799999999998777532 122211100 1223344444321100 0000111
Q ss_pred ECCC---Cc--eEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHH
Q 020045 198 ELPD---GQ--VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK 272 (332)
Q Consensus 198 ~lp~---~~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~ 272 (332)
...+ +. .+.+..+.| |.++.|- ...+.+.|.+++.... +...-++.|+|+||+|++|.+.+.|++
T Consensus 280 ~~~d~~~~~~~~~~itR~~f---e~l~~~l-----~~~~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~ 349 (653)
T PRK13411 280 ITADETGPKHLEMELTRAKF---EELTKDL-----VEATIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQK 349 (653)
T ss_pred eccCCCCCeeEEEEEcHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHH
Confidence 1111 11 233344333 2233330 0113444455554432 233445789999999999999999987
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 273 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 273 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.+... .+....+|..++..||+++|..
T Consensus 350 ~f~~~-------~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 350 FFGGK-------QPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred HcCCc-------CcCCCCCchHHHHHHHHHHHHh
Confidence 76321 1223457788999999999864
No 38
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.44 E-value=5e-13 Score=125.00 Aligned_cols=182 Identities=17% Similarity=0.242 Sum_probs=117.4
Q ss_pred CHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 020045 69 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 143 (332)
Q Consensus 69 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~ 143 (332)
++...+.+.+. ++..|+..+.+..+|+|+++++.. ...+|+|+|+++|+++.+.+|.++. ...+++||++++
T Consensus 156 ~~~~v~~~~~~-~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKC-VERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHH-HHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 45555666665 478999999999999999998643 3589999999999999999998765 456899999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCC---CceEeeCCccc-cccccCC
Q 020045 144 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD---GQVITIGAERF-RCPEVLF 219 (332)
Q Consensus 144 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~---~~~i~i~~~~~-~~~E~lf 219 (332)
+.+.+.+. ...+.+|++|.+++....+. ......+.++. +....++...+ .+.+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPL----------EGPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccC----------CCCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99877653 24567999999988654221 00111222221 12222222111 1111111
Q ss_pred CCccCCCcCCChHHHHH-HHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECC
Q 020045 220 QPSMIGMEAAGIHETTY-NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP 289 (332)
Q Consensus 220 ~p~~~~~~~~~l~~~i~-~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~ 289 (332)
. .+.+.|. +.+.+.+.+ ..+-+.|+||||+|++||+.+++.+.+.. ++++..|
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~~~------~vr~~~P 347 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVFDN------PVRIGLP 347 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHhCC------CeEEECC
Confidence 1 1444554 555444322 22323499999999999999999998843 4565544
No 39
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.43 E-value=1.2e-12 Score=130.43 Aligned_cols=215 Identities=16% Similarity=0.237 Sum_probs=137.0
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-------ceEEEEeCCCCceEEEEee--CCee
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA 127 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~t~lVVDiG~~~t~v~pv~--~g~~ 127 (332)
-..+|+++|..++...|+.+.+.+ +..|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 367999999999999998777765 88999999999999999998863 4689999999999998874 4432
Q ss_pred -cCcceEEEcccHHHHHHHHHHHHHhc------CCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCccc
Q 020045 128 -LPHAILRLDLAGRDLTDALMKILTER------GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEK 195 (332)
Q Consensus 128 -~~~~~~~~~~GG~~i~~~l~~~l~~~------~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (332)
+..+.....+||+++++.|.+++... +.++..... ...++++|+.++. ....
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~----------------~~~~ 282 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSS----------------STQA 282 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCC----------------CceE
Confidence 22222335799999999998877531 111111000 1123444443321 1122
Q ss_pred eEECC---CCc--eEeeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHH
Q 020045 196 SYELP---DGQ--VITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 269 (332)
Q Consensus 196 ~~~lp---~~~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~er 269 (332)
.+.++ ++. .+.+..+.|. .++.+|.. +.+.|.+++.....+ ..-++.|+|+||+|++|.+.+.
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHH
Confidence 22222 232 2334443331 22333332 445555666554322 2335789999999999999988
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 270 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 270 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
|++.+... .+....+|..++..||+++|..
T Consensus 352 i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 352 IKDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 88766321 1223447788999999998764
No 40
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.41 E-value=3.9e-12 Score=118.27 Aligned_cols=200 Identities=19% Similarity=0.267 Sum_probs=136.0
Q ss_pred CHHhHHHHhhhcccccCCCeEEEeechhhhhhccC-----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 020045 69 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 143 (332)
Q Consensus 69 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~ 143 (332)
+....+.+.+++ ++.+..-..++-+|+|++.+.= .-++++||+|+++|+|+.+.+|.+... ..+|+||+++|
T Consensus 163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHH
Confidence 456667677775 8889999999999999998764 357999999999999999999988875 44899999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCC--Cce-EeeCCccccccccCCC
Q 020045 144 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--GQV-ITIGAERFRCPEVLFQ 220 (332)
Q Consensus 144 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~--~~~-i~i~~~~~~~~E~lf~ 220 (332)
+.+...|.- +.+.+|+||.+++....+.. .....+..|. +.. ..+. +....++.
T Consensus 240 ~DIa~~l~t---------~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~~~~~t--~~~ls~II-- 296 (418)
T COG0849 240 KDIAKGLKT---------PFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDIPRQVT--RSELSEII-- 296 (418)
T ss_pred HHHHHHhCC---------CHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcccchhh--HHHHHHHH--
Confidence 999988743 56789999999886654321 1122222221 111 1111 11111111
Q ss_pred CccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECC----------C
Q 020045 221 PSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP----------P 290 (332)
Q Consensus 221 p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~----------~ 290 (332)
......+.+++...|++.-.. ..+...|+||||.++++|+.+-.++-+.. ++|+..| .
T Consensus 297 ----~aR~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~ 364 (418)
T COG0849 297 ----EARVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIAR 364 (418)
T ss_pred ----HhhHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhcc
Confidence 011122445555555554322 56667899999999999999888776643 4444443 3
Q ss_pred CCccccchhhHHhhcc
Q 020045 291 ERKYSVWIGGSILASL 306 (332)
Q Consensus 291 ~~~~~~w~Gasi~a~l 306 (332)
+|.|++..|.-.++..
T Consensus 365 ~p~fs~avGl~~~~~~ 380 (418)
T COG0849 365 NPAFSTAVGLLLYGAL 380 (418)
T ss_pred CchhhhhHHHHHHHhh
Confidence 5899999999988875
No 41
>PRK11678 putative chaperone; Provisional
Probab=99.40 E-value=7.1e-12 Score=119.13 Aligned_cols=139 Identities=16% Similarity=0.151 Sum_probs=90.1
Q ss_pred CCcceeeccccccc--c--Cce----eeec-----cccCCCCCCHH-HHHHHHHHHhh---hhcCCCCCCCcEEEeeCCC
Q 020045 5 GQKDAYVGDEAQSK--R--GIL----TLKY-----PIEHGIVSNWD-DMEKIWHHTFY---NELRVAPEEHPVLLTEAPL 67 (332)
Q Consensus 5 ~~~~~~vG~~a~~~--~--~~~----~~~~-----p~~~g~i~d~~-~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~ 67 (332)
+...++||.+|.+. . +.. .+++ ++..+.+...+ ....+|.++-. ..++ ..-..+|++.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g--~~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQ--AAITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEECCc
Confidence 34678899998764 1 111 2232 33334433333 23445555421 2333 2235699999988
Q ss_pred CC-----HHhHHH--HhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCC----------
Q 020045 68 NP-----KANREK--MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG---------- 125 (332)
Q Consensus 68 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g---------- 125 (332)
++ ..+|.. .+.-..+..|++.+.++++|.||+++++. .+-+|+|+|+++++++.+.-+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 76 555533 34555688999999999999999999873 568999999999999987421
Q ss_pred -eecCcceEEEcccHHHHHHHHH
Q 020045 126 -YALPHAILRLDLAGRDLTDALM 147 (332)
Q Consensus 126 -~~~~~~~~~~~~GG~~i~~~l~ 147 (332)
.++-.+ . ..+||+++++.|.
T Consensus 240 ~~vla~~-G-~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHS-G-QRIGGNDLDIALA 260 (450)
T ss_pred eeEEecC-C-CCCChHHHHHHHH
Confidence 111111 1 3699999999985
No 42
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.35 E-value=2.8e-12 Score=127.57 Aligned_cols=215 Identities=21% Similarity=0.283 Sum_probs=131.3
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L 128 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~t~lVVDiG~~~t~v~pv~--~g~~-~ 128 (332)
..+++++|..++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999999888776 77999999999999999988763 4789999999999999873 4532 3
Q ss_pred CcceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCccceEE
Q 020045 129 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 198 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (332)
........+||+++++.|.+++..+ +.+...... ...++++|+.+... ......+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~~~~~~~~ 280 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSN--------------DNTEITIS 280 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTS--------------SSSEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence 3334456799999999998877541 222211100 11233334333210 01111111
Q ss_pred ----CCCCce--EeeCCccc-cccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHH
Q 020045 199 ----LPDGQV--ITIGAERF-RCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 271 (332)
Q Consensus 199 ----lp~~~~--i~i~~~~~-~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~ 271 (332)
.++|.. +.+..+.| ...+.++.. +.+.|.+++...... ..-++.|+|+||+|++|-+.+.|+
T Consensus 281 ~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~ 349 (602)
T PF00012_consen 281 IESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALK 349 (602)
T ss_dssp EEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHH
T ss_pred cccccccccccccccccceecccccccccc---------ccccccccccccccc--ccccceeEEecCcccchhhhhhhh
Confidence 122332 33333333 122223332 556666666554322 233467999999999998877777
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 272 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 272 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+.+. . .+....+|..++..||+++|..
T Consensus 350 ~~f~----~----~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 350 ELFG----K----KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp HHTT----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred hccc----c----ccccccccccccccccccchhh
Confidence 6553 1 3344557788999999999863
No 43
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-10 Score=113.81 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=101.1
Q ss_pred ceeeccccccc-----cC-ceeeeccccCCC------------CCCH-HHHHHHHHHHh---hhhcCCCCCCCcEEEeeC
Q 020045 8 DAYVGDEAQSK-----RG-ILTLKYPIEHGI------------VSNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEA 65 (332)
Q Consensus 8 ~~~vG~~a~~~-----~~-~~~~~~p~~~g~------------i~d~-~~~~~~l~~~~---~~~l~~~~~~~~vvl~~~ 65 (332)
+++||..|+.. .+ .+.+++.+..+. .... +....++.++- ...++ ..-..+++++|
T Consensus 51 ~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVP 128 (579)
T COG0443 51 EVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVP 128 (579)
T ss_pred CEEecHHHHHHhhhCCcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeC
Confidence 69999988763 22 356666665431 1222 22334444432 12222 23577999999
Q ss_pred CCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeC--C-eecCcceEEEcc
Q 020045 66 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYE--G-YALPHAILRLDL 137 (332)
Q Consensus 66 ~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~--g-~~~~~~~~~~~~ 137 (332)
..++...|..+.+. .+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.|.= | +.+..+.....+
T Consensus 129 ayF~d~qR~at~~A-~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~L 207 (579)
T COG0443 129 AYFNDAQRQATKDA-ARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHL 207 (579)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCccc
Confidence 99999998866655 578999999999999999999984 57999999999999998843 3 334555566789
Q ss_pred cHHHHHHHHHHHHHh
Q 020045 138 AGRDLTDALMKILTE 152 (332)
Q Consensus 138 GG~~i~~~l~~~l~~ 152 (332)
||++++..|...+..
T Consensus 208 GGddfD~~l~~~~~~ 222 (579)
T COG0443 208 GGDDFDNALIDYLVM 222 (579)
T ss_pred CchhHHHHHHHHHHH
Confidence 999999998776653
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.07 E-value=3.2e-09 Score=98.03 Aligned_cols=245 Identities=11% Similarity=0.105 Sum_probs=133.2
Q ss_pred eeeccccccccCceeeeccc-cCCCCCCHHHHHHHHHHHhhhhcCCC--CCCCcEEE--eeCCCCC-HHhHHHHhhhccc
Q 020045 9 AYVGDEAQSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELRVA--PEEHPVLL--TEAPLNP-KANREKMTQIMFE 82 (332)
Q Consensus 9 ~~vG~~a~~~~~~~~~~~p~-~~g~i~d~~~~~~~l~~~~~~~l~~~--~~~~~vvl--~~~~~~~-~~~~~~l~~~lfe 82 (332)
|++|+++-..... ...+. .+++. .-+..+.++..++...+... .+...+++ -.|...- ...++.+.+.+-.
T Consensus 62 y~~G~~~~~~~~~--~~~~~~~~~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~ 138 (344)
T PRK13917 62 LLFGNDLDKTTNT--GKDTYSTNDRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNK 138 (344)
T ss_pred EEEcchhhhcccc--cCCcccccccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 8888885332221 01111 12222 23467777777763333221 12233443 2343331 2222445444322
Q ss_pred c-----------cCCCeEEEeechhhhhhccCC-------------ceEEEEeCCCCceEEEEeeCCeecCcceEEEccc
Q 020045 83 T-----------FNTPAMYVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 138 (332)
Q Consensus 83 ~-----------~~~~~v~~~~~~~~a~~~~g~-------------~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~G 138 (332)
. ..+..|.++|++++|++.... ...+|||+|+.+|+++.+.++.+....+..++.|
T Consensus 139 ~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G 218 (344)
T PRK13917 139 SRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKG 218 (344)
T ss_pred ceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccch
Confidence 2 456789999999999865421 3569999999999999999999998888889999
Q ss_pred HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccC
Q 020045 139 GRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVL 218 (332)
Q Consensus 139 G~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~l 218 (332)
..++.+.+.+.+..+..... .+...++++.+.- . +.+..+..+++.++...+.+
T Consensus 219 ~~~~~~~I~~~i~~~~~~~~--~~~~~ie~~l~~g-~---------------------i~~~~~~~id~~~~~~~~~~-- 272 (344)
T PRK13917 219 TIDVYKRIASHISKKEEGAS--ITPYMLEKGLEYG-A---------------------CKLNQKTVIDFKDEFYKEQD-- 272 (344)
T ss_pred HHHHHHHHHHHHHhhCCCCC--CCHHHHHHHHHcC-c---------------------EEeCCCceEehHHHHHHHHH--
Confidence 99999999999854332221 1223444433211 0 11111122332221111111
Q ss_pred CCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccch
Q 020045 219 FQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWI 298 (332)
Q Consensus 219 f~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~ 298 (332)
.+.+.+.+.++..=.+ ..-+++|+|+||+|.+ +.+ .|+..+|. + ...++|+++-.+
T Consensus 273 -----------~~~~~i~~~i~~~~~~--~~~~d~IiL~GGGA~l--l~~----~lk~~f~~---~--~~~~~p~~ANa~ 328 (344)
T PRK13917 273 -----------SVIDEVMSGFEIAVGN--INSFDRVIVTGGGANI--FFD----SLSHWYSD---V--EKADESQFANVR 328 (344)
T ss_pred -----------HHHHHHHHHHHHHhcc--cCCCCEEEEECCcHHH--HHH----HHHHHcCC---e--EEcCChHHHHHH
Confidence 0222222222211000 1124679999999976 444 44444442 2 345789999999
Q ss_pred hhHHhhcc
Q 020045 299 GGSILASL 306 (332)
Q Consensus 299 Gasi~a~l 306 (332)
|...++.+
T Consensus 329 G~~~~g~~ 336 (344)
T PRK13917 329 GYYKYGEL 336 (344)
T ss_pred HHHHHHHH
Confidence 99888863
No 45
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.00 E-value=9.2e-11 Score=96.14 Aligned_cols=189 Identities=16% Similarity=0.177 Sum_probs=127.6
Q ss_pred eeeccccCCCCCCHH----HHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhh
Q 020045 23 TLKYPIEHGIVSNWD----DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 98 (332)
Q Consensus 23 ~~~~p~~~g~i~d~~----~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a 98 (332)
....-+++|.+.|+- .++++.+.+ .+.|++.-. ..--..||-......+....+ .|..|....+.+.+|.|+
T Consensus 58 ~~advVRDGiVvdf~eaveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNV-iESAGlevl~vlDEPTAa 133 (277)
T COG4820 58 DWADVVRDGIVVDFFEAVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINV-IESAGLEVLHVLDEPTAA 133 (277)
T ss_pred hhhhhhccceEEehhhHHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEe-ecccCceeeeecCCchhH
Confidence 444567889888863 334444443 567776521 112223454433444444444 588999999999999999
Q ss_pred hhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccc
Q 020045 99 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIAL 178 (332)
Q Consensus 99 ~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~ 178 (332)
++-.+..+|-|||+|+++|-|+.+-+|.+++.+- -+.||.+++-.|.-. +++ +.+.+|+.|+..---
T Consensus 134 a~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~AD--EpTGGtHmtLvlAG~---ygi------~~EeAE~~Kr~~k~~-- 200 (277)
T COG4820 134 ADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSAD--EPTGGTHMTLVLAGN---YGI------SLEEAEQYKRGHKKG-- 200 (277)
T ss_pred HHHhccCCCcEEEeCCCcceeEEEEcCcEEEecc--CCCCceeEEEEEecc---cCc------CHhHHHHhhhccccc--
Confidence 9999999999999999999999999999988653 689999887654321 222 445677776543100
Q ss_pred cHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCccccc
Q 020045 179 DYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 258 (332)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~G 258 (332)
.|-|...-..++. +.+.+..-|..-++. .+.|+|
T Consensus 201 ------------------------------~Eif~~v~PV~eK---------MAeIv~~hie~~~i~-------dl~lvG 234 (277)
T COG4820 201 ------------------------------EEIFPVVKPVYEK---------MAEIVARHIEGQGIT-------DLWLVG 234 (277)
T ss_pred ------------------------------hhcccchhHHHHH---------HHHHHHHHhccCCCc-------ceEEec
Confidence 0111111111222 667777777766654 589999
Q ss_pred CccCCcChHHHHHHHH
Q 020045 259 GSTMFPGIADRMSKEI 274 (332)
Q Consensus 259 G~s~i~G~~erl~~eL 274 (332)
|.+..||+.+-++++|
T Consensus 235 Gac~~~g~e~~Fe~~l 250 (277)
T COG4820 235 GACMQPGVEELFEKQL 250 (277)
T ss_pred ccccCccHHHHHHHHh
Confidence 9999999999999998
No 46
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.00 E-value=6.5e-09 Score=95.22 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=96.6
Q ss_pred CCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccc
Q 020045 4 MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 83 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 83 (332)
.+.+.|+||+.|...... .-.+.+.+... .-+....++.+++.. .+.+ ....+++--|...-...++.+.+.+-..
T Consensus 53 ~~g~~y~VG~~a~~~~~~-~~~~~~~~~~~-~~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~ 128 (320)
T TIGR03739 53 VGGLFYEVGPDVSLAADT-NRARQLHDEYT-ETPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGE 128 (320)
T ss_pred ECCEEEEeccchhhcccC-ccceecccccc-CCHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccc
Confidence 356788999887543221 11111222222 223566677776633 2222 1123444445555456677777765432
Q ss_pred --------cCCCeEEEeechhhhhhcc---------CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHH
Q 020045 84 --------FNTPAMYVAIQAVLSLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 146 (332)
Q Consensus 84 --------~~~~~v~~~~~~~~a~~~~---------g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l 146 (332)
..+..|.++|+++.|.+.. ...+.+|||+|+.+|+++.+.++.+....+.+.+.|-..+.+.+
T Consensus 129 ~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I 208 (320)
T TIGR03739 129 HDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLL 208 (320)
T ss_pred eecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHH
Confidence 4678899999999887653 33567999999999999999888988887778899999999999
Q ss_pred HHHHHhc
Q 020045 147 MKILTER 153 (332)
Q Consensus 147 ~~~l~~~ 153 (332)
.+.+.++
T Consensus 209 ~~~i~~~ 215 (320)
T TIGR03739 209 AAEISKD 215 (320)
T ss_pred HHHHHhh
Confidence 9888753
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.98 E-value=3.8e-09 Score=98.06 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=105.4
Q ss_pred CHHhHHHHhhhcccccCCCeEEEeechhhhhhcc----------C-Cc-eEEEEeCCCCceEEEEeeCCeecCcceEEEc
Q 020045 69 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS----------G-RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD 136 (332)
Q Consensus 69 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~ 136 (332)
++...+.+.++ |+..|+.-..+..+++|.+-+. . .. +.++||+|+++|+++.+.+|.+.. .+.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEee
Confidence 56667777777 4778988888888887764433 1 22 489999999999999999998876 46689
Q ss_pred ccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccc
Q 020045 137 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPE 216 (332)
Q Consensus 137 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E 216 (332)
+||+++++.+.+.+. .+.+.++++|....+... ...+ +.+
T Consensus 218 ~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~~~-~~~~------------------------------~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLPLL-YDPE------------------------------VLR 257 (348)
T ss_pred chHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCCCc-hhHH------------------------------HHH
Confidence 999999999876552 244668888876543211 0000 000
Q ss_pred cCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHH
Q 020045 217 VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT 275 (332)
Q Consensus 217 ~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~ 275 (332)
..+. .|...|.+++.-.-........+.|+||||++.++||.+.|++++.
T Consensus 258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 0111 1555555666433212223346789999999999999999999985
No 48
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.1e-08 Score=89.54 Aligned_cols=214 Identities=20% Similarity=0.250 Sum_probs=123.8
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC------ceEEEEeCCCCceEEEE--eeCCe-ec
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVP--IYEGY-AL 128 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~t~lVVDiG~~~t~v~p--v~~g~-~~ 128 (332)
...|+++|..++..+|+. ++-.--..+...+.++++|.+|++++|. .+-+|.|.|+++.+|+. |-+|. -+
T Consensus 173 ~~AVvTvPAYFNDAQrQA-TKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQA-TKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhh-hcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 568899999999998875 4444566888999999999999999984 67899999999998874 45662 23
Q ss_pred CcceEEEcccHHHHHHHHHHHHHh-----cCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCc
Q 020045 129 PHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQ 203 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~ 203 (332)
..+.....+||.++++...+.+-. .+.++. .+...+.+++++. +..+...++......++
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~--kdnkA~~KLrRe~---------EkAKRaLSsqhq~riEI---- 316 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVR--KDNKAVQKLRREV---------EKAKRALSSQHQVRIEI---- 316 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccc--hhhHHHHHHHHHH---------HHHHhhhccccceEEee----
Confidence 334445679999999877654432 233332 2333344444331 11111111111111111
Q ss_pred eEeeCCccccccccCCCCccCCCc---------CCChHHHHHHHHhcC--CHHHHHHHhcCcccccCccCCcChHHHHHH
Q 020045 204 VITIGAERFRCPEVLFQPSMIGME---------AAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSK 272 (332)
Q Consensus 204 ~i~i~~~~~~~~E~lf~p~~~~~~---------~~~l~~~i~~~i~~~--~~~~r~~l~~nIvl~GG~s~i~G~~erl~~ 272 (332)
|.||....+... -+.|-..-.+.+++. +.++++.-...|||+||.++||-+.+.++.
T Consensus 317 ------------eS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~ 384 (663)
T KOG0100|consen 317 ------------ESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKD 384 (663)
T ss_pred ------------eeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHH
Confidence 334433221100 011222222222222 445666666789999999999955544443
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 273 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 273 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
-+...-|+ ..-+|.-++..||+.-|..
T Consensus 385 fF~GKeps-------kGinPdEAVAYGAAVQaGv 411 (663)
T KOG0100|consen 385 FFNGKEPS-------KGINPDEAVAYGAAVQAGV 411 (663)
T ss_pred HhCCCCcc-------CCCChHHHHHhhhhhhhcc
Confidence 33222222 1225566788888877654
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.79 E-value=5e-08 Score=90.22 Aligned_cols=163 Identities=21% Similarity=0.346 Sum_probs=97.3
Q ss_pred CHHhHHHHhhhcccccCCCeEEEeechhhh--hhcc---------CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcc
Q 020045 69 PKANREKMTQIMFETFNTPAMYVAIQAVLS--LYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 137 (332)
Q Consensus 69 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a--~~~~---------g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~ 137 (332)
+++.-+..++++ +.+|..-..+--++.|. ++.. ...+-++||+|++.|+++.+.+|.++. .+.+++
T Consensus 134 ~k~~v~~~~~~~-~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~ 210 (340)
T PF11104_consen 134 PKEIVESYVELF-EEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPI 210 (340)
T ss_dssp EHHHHHHHHHHH-HHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-
T ss_pred cHHHHHHHHHHH-HHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEee
Confidence 456666666664 77887766555554443 3332 123568999999999999999999886 466899
Q ss_pred cHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCcccccccc
Q 020045 138 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEV 217 (332)
Q Consensus 138 GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~ 217 (332)
||+++++.+.+.+. .+.+.++.+|..... +.+...+ +.+.
T Consensus 211 G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~~l-~~~~~~~------------------------------~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELG---------IDFEEAEELKRSGGL-PEEYDQD------------------------------ALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT-----------HHHHHHHHHHT-------HHH------------------------------HHHH
T ss_pred CHHHHHHHHHHhcC---------CCHHHHHHHHhcCCC-CcchHHH------------------------------HHHH
Confidence 99999999887653 245567777765431 1111100 0001
Q ss_pred CCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECC
Q 020045 218 LFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP 289 (332)
Q Consensus 218 lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~ 289 (332)
.++ .|..-|.++++-.-......-.+.|+||||+|+++||.+.|.++| +.++.+..|
T Consensus 251 ~~~---------~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l------~~~v~~~~p 307 (340)
T PF11104_consen 251 FLE---------ELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL------GIPVEVINP 307 (340)
T ss_dssp HHH---------HHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH------TSEEEE--G
T ss_pred HHH---------HHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH------CCceEEcCh
Confidence 111 166667777765444444556778999999999999999999999 446666543
No 50
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.1e-07 Score=88.67 Aligned_cols=215 Identities=18% Similarity=0.237 Sum_probs=129.5
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-------ceEEEEeCCCCceEEEEe--eCCe-e
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPI--YEGY-A 127 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~t~lVVDiG~~~t~v~pv--~~g~-~ 127 (332)
..+++++|..++..+|...-+.. ..+|++.+.++++|.||++++|. .+-+|.|.|+++.+|+++ .+|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45899999999999888666655 66899999999999999999873 466999999999999977 3332 3
Q ss_pred cCcceEEEcccHHHHHHHHHHHHHh-----cCCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCccceE
Q 020045 128 LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 197 (332)
Q Consensus 128 ~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (332)
+.......++||.++++.|...+.. .+.+...... ....|+.|+... +......
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS----------------~~~~~~i 286 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLS----------------SSTQASI 286 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhc----------------cccccee
Confidence 4555555789999999988766542 1111111000 011223333221 1111111
Q ss_pred E---CCCCceEe--eCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHH
Q 020045 198 E---LPDGQVIT--IGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 271 (332)
Q Consensus 198 ~---lp~~~~i~--i~~~~~~-~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~ 271 (332)
. |-+|..+. +...||. .+.-||.. ..+.+.++++..- +-+.....||++||.+.+|.+..-++
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHH
Confidence 1 11222221 2223321 22334433 3444445554432 11223456999999999997776666
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhHHhhccc
Q 020045 272 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 307 (332)
Q Consensus 272 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~ 307 (332)
+-+... ....+-+|+.++..||++.|.+.
T Consensus 356 d~f~~k-------~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 356 DFFNGK-------ELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred HHhccc-------ccccCCCHHHHHHhhHHHHhhhc
Confidence 554321 12233467889999999988764
No 51
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.53 E-value=1.2e-06 Score=77.79 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=80.7
Q ss_pred EEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHH
Q 020045 107 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET 186 (332)
Q Consensus 107 ~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 186 (332)
.+|+|||++.|.++.+.+|++++. +..++||++++..+.+...- +.+.++++|.... .+.||..+.
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~L---------~~~~a~~~k~~~~-~P~~y~~~v-- 260 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYSL---------TEEKAEEIKRGGT-LPTDYGSEV-- 260 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhCC---------ChhHhHHHHhCCC-CCCchhHHH--
Confidence 459999999999999999999975 67899999999998776532 3455667666543 222332221
Q ss_pred hccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcCh
Q 020045 187 AKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 266 (332)
Q Consensus 187 ~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~ 266 (332)
..|. ...|.+-|.++|+-.-..-...-++.|+|+||++.+.|+
T Consensus 261 --------------------------------l~~f-----~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL 303 (354)
T COG4972 261 --------------------------------LRPF-----LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGL 303 (354)
T ss_pred --------------------------------HHHH-----HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhH
Confidence 0000 012667777777653111112234579999999999999
Q ss_pred HHHHHHHHH
Q 020045 267 ADRMSKEIT 275 (332)
Q Consensus 267 ~erl~~eL~ 275 (332)
.+.+.+.|.
T Consensus 304 ~~~i~qrl~ 312 (354)
T COG4972 304 AAAIQQRLS 312 (354)
T ss_pred HHHHHHHhC
Confidence 999999884
No 52
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.9e-06 Score=82.33 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=75.9
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC----------ceEEEEeCCCCceEEEEeeCCee
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGYA 127 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~t~lVVDiG~~~t~v~pv~~g~~ 127 (332)
..+++++|+++.+.+|+.+++.. +-.+...++++++..++|+.+|. ..-++.|+|++.|+++.|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 56999999999999999999886 77899999999999999999984 45789999999999998742211
Q ss_pred cC-------------cceEEEcccHHHHHHHHHHHHHh
Q 020045 128 LP-------------HAILRLDLAGRDLTDALMKILTE 152 (332)
Q Consensus 128 ~~-------------~~~~~~~~GG~~i~~~l~~~l~~ 152 (332)
-. .......+||..++..|..+|..
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 11 11122458999999999998875
No 53
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.1e-06 Score=79.23 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=78.2
Q ss_pred CCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC------------ceEEEEeCCCCceEEEEee
Q 020045 56 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY 123 (332)
Q Consensus 56 ~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~t~lVVDiG~~~t~v~pv~ 123 (332)
.-..+++..|.+++..+|..+++.. ...|+.-+.++++..|+++++|. .+-+-||+||+.++++..-
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 4467999999999999999999997 78999999999999999999983 3477899999999988663
Q ss_pred --CCee-cCcceEEEcccHHHHHHHHHHHHHh
Q 020045 124 --EGYA-LPHAILRLDLAGRDLTDALMKILTE 152 (332)
Q Consensus 124 --~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~ 152 (332)
-|.. +..+...-.+||+++++.|.+.+..
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 3322 2333344579999999999888764
No 54
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.06 E-value=6.8e-06 Score=75.21 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=65.9
Q ss_pred HHHHHhhhhcCCCCCCCcEEEeeCCC--CC---HHhHHHHhh---hcc--------cccCCCeEEEeechhhhhhcc---
Q 020045 42 IWHHTFYNELRVAPEEHPVLLTEAPL--NP---KANREKMTQ---IMF--------ETFNTPAMYVAIQAVLSLYAS--- 102 (332)
Q Consensus 42 ~l~~~~~~~l~~~~~~~~vvl~~~~~--~~---~~~~~~l~~---~lf--------e~~~~~~v~~~~~~~~a~~~~--- 102 (332)
...|++. .-++.+.+..+++..|.- .. +..++.+.+ -+. ..+.+..|.+.|++++|.|..
T Consensus 81 av~haL~-~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHALL-KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHHH-HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 4456663 345666666677776622 11 111222211 111 235578999999999998874
Q ss_pred --CCceEEEEeCCCCceEEEEeeCCeecC-cceEEEcccHHHHHHHHHHHHHh
Q 020045 103 --GRTTGIVLDSGDGVSHTVPIYEGYALP-HAILRLDLAGRDLTDALMKILTE 152 (332)
Q Consensus 103 --g~~t~lVVDiG~~~t~v~pv~~g~~~~-~~~~~~~~GG~~i~~~l~~~l~~ 152 (332)
...+.+|||||+.+|+++.|.++.+.. .+....++|-..+.+.+.+.|..
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 246799999999999999998765443 33344578999999999988865
No 55
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.5e-05 Score=72.61 Aligned_cols=217 Identities=19% Similarity=0.238 Sum_probs=125.0
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCCc-----eEEEEeCCCCceEEEE--eeCCe-ecC
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVP--IYEGY-ALP 129 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----t~lVVDiG~~~t~v~p--v~~g~-~~~ 129 (332)
...++++|.+++..+|. .++-+..-++...+..+++|.+|+.++|.. .-.|.|+|+++.+|+. |.+|. .+.
T Consensus 161 ~~avvtvpAyfndsqRq-aTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQ-ATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHH-HhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 46888899998888887 455556888999999999999999999853 4678899999988875 46663 345
Q ss_pred cceEEEcccHHHHHHHHHHHHHh---cCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCc----cceEECCCC
Q 020045 130 HAILRLDLAGRDLTDALMKILTE---RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV----EKSYELPDG 202 (332)
Q Consensus 130 ~~~~~~~~GG~~i~~~l~~~l~~---~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~----~~~~~lp~~ 202 (332)
.+......||.+++..+..++-. ++..+.-..+...++++++.. |-.+++.++.. +.+|.-.|.
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaa---------EkaKielSs~~~tei~lp~iTada 310 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAA---------EKAKIELSSRQQTEINLPFITADA 310 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHH---------HhhhhhhhhcccceeccceeeccC
Confidence 55556779999999998776542 111121123333444444321 11222222222 223332232
Q ss_pred ---ceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHH-----HHhcCcccccCccCCcChHHHHHHHH
Q 020045 203 ---QVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEI 274 (332)
Q Consensus 203 ---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~-----~l~~nIvl~GG~s~i~G~~erl~~eL 274 (332)
..+++...|-..-| + ++.+|.+.|.-|-.++|. .=++.|+++||.+++|-..+.+.+-+
T Consensus 311 ~gpkh~~i~~tr~efe~-~------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f 377 (640)
T KOG0102|consen 311 SGPKHLNIELTRGEFEE-L------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF 377 (640)
T ss_pred CCCeeEEEeecHHHHHH-h------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh
Confidence 23333222211111 1 344555555444333332 33456999999999996666555322
Q ss_pred HhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 275 TALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 275 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
..-|. +- .+|.-++..||++-+.
T Consensus 378 -gk~p~----~~---vnPdeava~GAaiqgg 400 (640)
T KOG0102|consen 378 -GKGPS----KG---VNPDEAVAGGAAIQGG 400 (640)
T ss_pred -CCCCC----CC---cCCcchhccchhhccc
Confidence 22222 11 1445566666666544
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.95 E-value=0.00026 Score=62.46 Aligned_cols=207 Identities=16% Similarity=0.226 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhh----hhhccCCceEEEE
Q 020045 35 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL----SLYASGRTTGIVL 110 (332)
Q Consensus 35 d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~----a~~~~g~~t~lVV 110 (332)
.|+.+.+.++.++ +..+.++.+...+.+...... .+. |. + .++.+-.+ +.+... ....||
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~~i~~Tg~~~~-----~v~---~~--~----~~~~ei~~~~~g~~~~~~-~~~~vi 96 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPIDKIVATGYGRH-----KVG---FA--D----KIVTEISCHGKGANYLAP-EARGVI 96 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhheeEEEEECCCcc-----ccc---cc--C----CceEEhhHHHHHHHHHCC-CCCEEE
Confidence 5788877888887 555655544333322111111 111 11 1 13334333 333333 344599
Q ss_pred eCCCCceEEEEeeCCeecCcc-eEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhcc
Q 020045 111 DSGDGVSHTVPIYEGYALPHA-ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKT 189 (332)
Q Consensus 111 DiG~~~t~v~pv~~g~~~~~~-~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~ 189 (332)
|||++.|.+.-+.+|.+..-. ...+..|+-.+.+.+.+.|. . +.+.+++++.+.... ...
T Consensus 97 diGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~---~------~~~e~~~~~~~~~~~-~~~--------- 157 (248)
T TIGR00241 97 DIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG---V------SVEELGSLAEKADRK-AKI--------- 157 (248)
T ss_pred EecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC---C------CHHHHHHHHhcCCCC-CCc---------
Confidence 999999999999999776221 23366788888887776653 2 233445544432100 000
Q ss_pred CCCccceEECCCCceEee---CCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhc-CcccccCccCCcC
Q 020045 190 SSAVEKSYELPDGQVITI---GAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPG 265 (332)
Q Consensus 190 ~~~~~~~~~lp~~~~i~i---~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~-nIvl~GG~s~i~G 265 (332)
+.....|.-.+ .++. +..+..+...++ ..+...+.+.+...+ .+ .|+++||.++.++
T Consensus 158 -~~~c~vf~~s~--vi~~l~~g~~~~di~~~~~---------~~va~~i~~~~~~~~-------~~~~Vvl~GGva~n~~ 218 (248)
T TIGR00241 158 -SSMCTVFAESE--LISLLAAGVKKEDILAGVY---------ESIAERVAEMLQRLK-------IEAPIVFTGGVSKNKG 218 (248)
T ss_pred -CCEeEEEechh--HHHHHHCCCCHHHHHHHHH---------HHHHHHHHHHHhhcC-------CCCCEEEECccccCHH
Confidence 00000000000 0000 000000000000 013333333332222 23 7999999999999
Q ss_pred hHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHh
Q 020045 266 IADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 303 (332)
Q Consensus 266 ~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 303 (332)
+.+.+.+.| ..++..++++.+....||+++
T Consensus 219 l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 219 LVKALEKKL--------GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHh--------CCcEEcCCCccHHHHHHHHhC
Confidence 999999887 235666778888899998863
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.08 E-value=0.0066 Score=56.52 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=40.5
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
-+.|+++||.++.+|+.+.+.+.|. .+++.|++|++....||+++|+
T Consensus 356 ~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 REPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 3459999999999999999998883 3566788999999999999984
No 58
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.97 E-value=0.0063 Score=55.55 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=40.0
Q ss_pred cccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 254 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 254 Ivl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
||++||+++..++.+.+.+.|. .+|..|+++++....||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg--------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG--------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC--------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999999998873 5788899999999999999886
No 59
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.97 E-value=0.0021 Score=56.63 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=41.0
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhh
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
.+|+++||.++-+++.+.|+++|... ...+.+..+++|++....||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 36999999999999999999998532 124556667889999999999875
No 60
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.82 E-value=0.0023 Score=60.41 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=70.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHhhhhcCCCCCC--CcEEEeeCCCCCHHhHHHHhhhcc---cccCCCeEEEeec----hh
Q 020045 26 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMF---ETFNTPAMYVAIQ----AV 96 (332)
Q Consensus 26 ~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~--~~vvl~~~~~~~~~~~~~l~~~lf---e~~~~~~v~~~~~----~~ 96 (332)
.|+......|-+.++++.+.=| +.-++.+++ ..+.++.-......+-.+..+.+= .+|=+.....--+ ++
T Consensus 55 TPl~~~~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ 133 (475)
T PRK10719 55 TPLLKQGEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGK 133 (475)
T ss_pred cCCCCCccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHH
Confidence 4776767779999999999986 778888754 333333333323333333333211 0010011111112 33
Q ss_pred hhhhcc----CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHH
Q 020045 97 LSLYAS----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 145 (332)
Q Consensus 97 ~a~~~~----g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~ 145 (332)
+++.+. .....++||||+++|+++.+.+|.++... .+++||++++..
T Consensus 134 ASg~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~~T~--~l~vGG~~IT~D 184 (475)
T PRK10719 134 GAGAQTLSEERNTRVLNIDIGGGTANYALFDAGKVIDTA--CLNVGGRLIETD 184 (475)
T ss_pred HhhHHHhhhhccCceEEEEeCCCceEEEEEECCEEEEEE--EEecccceEEEC
Confidence 332222 13578999999999999999999988754 489999987765
No 61
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.81 E-value=0.0049 Score=55.09 Aligned_cols=48 Identities=17% Similarity=0.375 Sum_probs=39.3
Q ss_pred HhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEE-CCCCCccccchhhHHhhc
Q 020045 250 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV-APPERKYSVWIGGSILAS 305 (332)
Q Consensus 250 l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~ 305 (332)
+-..|+++||.++.+|+.+.|++.|.. ++. .|++|++....||+++|.
T Consensus 239 i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 239 VEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 445799999999999999999998842 333 366789999999999983
No 62
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=96.37 E-value=0.0057 Score=53.58 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=108.1
Q ss_pred HHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHH
Q 020045 74 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMK 148 (332)
Q Consensus 74 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~ 148 (332)
+.+++.+-++++++...-..++-+|..+.-. ..-.|+|+|+++|+.+.|-....+. ..++-=.|+.+|-.+..
T Consensus 98 ~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mVTmlI~s 175 (332)
T PF08841_consen 98 QMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMVTMLINS 175 (332)
T ss_dssp HHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhhHHHHHH
Confidence 5567777778899988888899888887633 2356789999999999885443333 23455677888887766
Q ss_pred HHHhcCCCccchhHHHHHHHHHHH-cccccccHH--HH------HHHhccCCCccceEECCCCceEeeCCc---------
Q 020045 149 ILTERGYSFTTTAEREIVRDMKEK-LAYIALDYE--QE------LETAKTSSAVEKSYELPDGQVITIGAE--------- 210 (332)
Q Consensus 149 ~l~~~~~~~~~~~~~~~~~~ik~~-~~~v~~~~~--~~------~~~~~~~~~~~~~~~lp~~~~i~i~~~--------- 210 (332)
-|-. .+.+++|+||+- .+-|-.-|. .| +.....+..+.+...+.++..+.++..
T Consensus 176 ELGl--------~d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEkir~v 247 (332)
T PF08841_consen 176 ELGL--------EDRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEKIRSV 247 (332)
T ss_dssp HCT---------S-HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHHHHHH
T ss_pred hhCC--------CCHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHHHHHH
Confidence 5522 367889999873 222211000 00 000000111222233333333333110
Q ss_pred cccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 020045 211 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 290 (332)
Q Consensus 211 ~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~ 290 (332)
|..+-+-. .+.-+.+++.+..+.---+....+||+||++.==-+.+-+.++|.++-----+-++....
T Consensus 248 Rr~AK~kV------------FVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~e 315 (332)
T PF08841_consen 248 RREAKEKV------------FVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVE 315 (332)
T ss_dssp HHHHHHHH------------HHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTS
T ss_pred HHHhhhhh------------hHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccccccc
Confidence 11111111 123334445544322111223469999999988888899999997653211112222234
Q ss_pred CCccccchhh
Q 020045 291 ERKYSVWIGG 300 (332)
Q Consensus 291 ~~~~~~w~Ga 300 (332)
.|++++..|-
T Consensus 316 GPRNAVATGL 325 (332)
T PF08841_consen 316 GPRNAVATGL 325 (332)
T ss_dssp TTSTHHHHHH
T ss_pred CchHHHHHHH
Confidence 5788888884
No 63
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.29 E-value=0.027 Score=52.22 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=42.3
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhh
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
-..|+++||.++-+|+.+.|++.|....+ ..+|+.|++|++....||+++|
T Consensus 382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 382 TDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 45799999999999999999998865432 3467778899999999999875
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=95.66 E-value=0.081 Score=47.35 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=41.5
Q ss_pred HhcCccccc-CccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 250 LYGNIVLSG-GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 250 l~~nIvl~G-G~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
-.++|+++| |.+..|++.+.|.+.++- ...++..|++|++....||++++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 347899999 799999999999987642 134677788999999999998864
No 65
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=94.66 E-value=0.13 Score=45.90 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=34.7
Q ss_pred cccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhh
Q 020045 254 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 254 Ivl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
|+++||..+-+.+.+.|++.|.+..+.. .+..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999988877777766665554432 23344567999999999886
No 66
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=94.60 E-value=0.11 Score=49.43 Aligned_cols=128 Identities=18% Similarity=0.313 Sum_probs=86.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHhhhhcCCCCCC--C-cEEEeeCCCCCHHhHHHHhhhcccccC---CCeEEEeechhhhh
Q 020045 26 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE--H-PVLLTEAPLNPKANREKMTQIMFETFN---TPAMYVAIQAVLSL 99 (332)
Q Consensus 26 ~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~--~-~vvl~~~~~~~~~~~~~l~~~lfe~~~---~~~v~~~~~~~~a~ 99 (332)
.|+.+....|-+.++++++.=| +.-++.|.+ . .|+++--.. -+++-+.+.+.|-+.+| +..--=--+++.|.
T Consensus 52 TPl~~~~~ID~~al~~iv~~eY-~~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAg 129 (473)
T PF06277_consen 52 TPLLSQTEIDAEALKEIVEEEY-RKAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAGDFVVATAGPDLESIIAG 129 (473)
T ss_pred cCCCCCCccCHHHHHHHHHHHH-HHcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhc
Confidence 4787777779999999999986 778888754 3 355554333 44444555555544433 22222223677777
Q ss_pred hccCC--------ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHH-----------HHHHHHHHHHHhcCCCc
Q 020045 100 YASGR--------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR-----------DLTDALMKILTERGYSF 157 (332)
Q Consensus 100 ~~~g~--------~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~-----------~i~~~l~~~l~~~~~~~ 157 (332)
.++|. .+-+=+|||+++|.++.+.+|.++..++ +++||+ .++..++.+++..+..+
T Consensus 130 kGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 130 KGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred cCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 77762 3344479999999999999999987666 789998 34455566666655543
No 67
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.15 E-value=0.25 Score=38.23 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=40.5
Q ss_pred EEEeCCCCceEEEEeeCCeecCcceEEEccc--------HHHHH--HHHHHHHHhcCCCccchhHHHHHHHH-HHHcccc
Q 020045 108 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYSFTTTAEREIVRDM-KEKLAYI 176 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v 176 (332)
++||+|+++|.++...++.... ...+++| |.+++ +.+.+.++. ..+.+|++ |.+...+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 6899999999999998886655 4568999 99999 888887754 34567777 7665544
No 68
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=92.89 E-value=0.093 Score=47.39 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=24.3
Q ss_pred hhhhh-ccCCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 96 VLSLY-ASGRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 96 ~~a~~-~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
..+++ ..+..+++++|||+++|+|++|.||.+...
T Consensus 67 ~ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 67 IGAAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHHHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 33445 568899999999999999999999998643
No 69
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=92.36 E-value=0.1 Score=45.75 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=37.6
Q ss_pred ceEEEEeCCCCceEEEEeeCCeecCcceEEE----cccHHHHHHHHHHHHHh
Q 020045 105 TTGIVLDSGDGVSHTVPIYEGYALPHAILRL----DLAGRDLTDALMKILTE 152 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~----~~GG~~i~~~l~~~l~~ 152 (332)
.+-+.|.+|...|.++.|.+|+++.....+. ..||-.++..+...|.+
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~ 214 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALAN 214 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHH
Confidence 3457899999999999999999986644433 57777788888877764
No 70
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=89.42 E-value=0.54 Score=42.26 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=53.2
Q ss_pred CcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeech---hhhh----hcc-CCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 58 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA---VLSL----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 58 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~---~~a~----~~~-g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
..++-| +.+-.-.++..+++.+.+..|++ +.+++.. .++. .+. ...+++|+|+|+++|.++.+.++.+..
T Consensus 59 i~~vAT-sA~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~ 136 (285)
T PF02541_consen 59 IRAVAT-SALREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF 136 (285)
T ss_dssp EEEEEE-HHHHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE
T ss_pred EEEEhh-HHHHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE
Confidence 334443 33334445566677776767754 3344332 2221 122 567899999999999999999998776
Q ss_pred cceEEEcccHHHHHHHH
Q 020045 130 HAILRLDLAGRDLTDAL 146 (332)
Q Consensus 130 ~~~~~~~~GG~~i~~~l 146 (332)
. ..+|+|.-.+++.+
T Consensus 137 ~--~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 137 S--QSLPLGAVRLTERF 151 (285)
T ss_dssp E--EEES--HHHHHHHH
T ss_pred e--eeeehHHHHHHHHH
Confidence 4 56899999888765
No 71
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=88.88 E-value=0.4 Score=43.69 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.1
Q ss_pred CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 103 GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 103 g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
...+++.+|||+++|+|+||.+|.+...
T Consensus 126 ~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 126 RIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred cCCCEEEEEcCccceeeEEecCCEeeee
Confidence 3688999999999999999999998754
No 72
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=86.99 E-value=5.3 Score=36.69 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=36.6
Q ss_pred CcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC---CCccccchhhHHhhc
Q 020045 253 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILAS 305 (332)
Q Consensus 253 nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~ 305 (332)
-|+|+|-.+.++.|.+.+...|...++ +++.... -..-.+..|++++|.
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~----~~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFP----VKVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhcc----cceeecccccccchhhhhhHHHHhh
Confidence 399999999999999999999988876 2332211 112358899999886
No 73
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=86.88 E-value=23 Score=32.02 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=38.8
Q ss_pred HhhhcccccCCCeEEEeechhhhhhc-------cCCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 76 MTQIMFETFNTPAMYVAIQAVLSLYA-------SGRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 76 l~~~lfe~~~~~~v~~~~~~~~a~~~-------~g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
+.+.+-+.+++| |++.++.-+++++ .+..+.++|.+|.+ +-...|.+|.++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtG-iG~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTG-LGGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCc-cEEEEEECCEEee
Confidence 444554567777 7799999888773 24578999999976 4777888998765
No 74
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=85.48 E-value=0.63 Score=40.60 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCceEEEEeeCCe
Q 020045 104 RTTGIVLDSGDGVSHTVPIYEGY 126 (332)
Q Consensus 104 ~~t~lVVDiG~~~t~v~pv~~g~ 126 (332)
..+|+.||+|+.+|+|.||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 47799999999999999999996
No 75
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=6.6 Score=33.81 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=66.6
Q ss_pred eeccccCCCCCC------HHHHHHHHHHHhhhhcCCCCCCCcEEEee--CCCCCH----HhHHHHhhhcccccCCCeEEE
Q 020045 24 LKYPIEHGIVSN------WDDMEKIWHHTFYNELRVAPEEHPVLLTE--APLNPK----ANREKMTQIMFETFNTPAMYV 91 (332)
Q Consensus 24 ~~~p~~~g~i~d------~~~~~~~l~~~~~~~l~~~~~~~~vvl~~--~~~~~~----~~~~~l~~~lfe~~~~~~v~~ 91 (332)
...|=..|.+.. .+-+-.+++..| +.-++++.+..++... |-+-.+ ..-.+.+..+. +.|-| =
T Consensus 32 YitPPG~GFlP~~TA~HHr~~il~Lv~~al-~ea~v~~~diD~icyTKGPGmgaPL~~vaivaRtlsllw---~kPlv-~ 106 (336)
T KOG2708|consen 32 YITPPGEGFLPRDTARHHRAWILGLVKQAL-EEAGVTSDDIDCICYTKGPGMGAPLSVVAIVARTLSLLW---NKPLV-G 106 (336)
T ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HHcCCChhhCCEEEEcCCCCCCCchhhHHHHHHHHHHHh---CCCcc-c
Confidence 445667887742 233445566666 4456666666555433 333322 23333333332 23322 1
Q ss_pred eechh----hhhhccCCceEEEEeCCCCceEEEEeeCCee-cCcceEEEcccHHHHHHHHHHHHHhc
Q 020045 92 AIQAV----LSLYASGRTTGIVLDSGDGVSHTVPIYEGYA-LPHAILRLDLAGRDLTDALMKILTER 153 (332)
Q Consensus 92 ~~~~~----~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~ 153 (332)
++..+ +.-+-+|..+.+|+-+.++.|+|..+.+.+- +.. .++++.=-.....+.+.|+..
T Consensus 107 VNHCigHIEMGR~iTgA~nPvvLYvSGGNTQvIAYse~rYrIFG--ETlDIAvGNClDRFAR~lkls 171 (336)
T KOG2708|consen 107 VNHCIGHIEMGREITGAQNPVVLYVSGGNTQVIAYSEKRYRIFG--ETLDIAVGNCLDRFARVLKLS 171 (336)
T ss_pred chhhhhhhhhcceeccCCCCEEEEEeCCceEEEEEccceeeeec--ceehhhhhhhHHHHHHHhcCC
Confidence 12222 2233456788999999999999999988743 322 335554445555666676643
No 76
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.08 E-value=1.9 Score=41.92 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHhHHHHhhhcccccCCCeE--EEeechhhhhhcc----C-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 020045 70 KANREKMTQIMFETFNTPAM--YVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 142 (332)
Q Consensus 70 ~~~~~~l~~~lfe~~~~~~v--~~~~~~~~a~~~~----g-~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i 142 (332)
-.+.+...+.+-+.+|++-= .=-.++-++.++. + ...++|+|+|+++|.++-+.+..+.. ...+|+|.-.+
T Consensus 87 A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~G~v~l 164 (492)
T COG0248 87 APNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISLPLGCVRL 164 (492)
T ss_pred CCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce--eEEeecceEEe
Confidence 33444555555555665522 2223343333332 3 67899999999999999887766554 45689998877
Q ss_pred HHHH
Q 020045 143 TDAL 146 (332)
Q Consensus 143 ~~~l 146 (332)
++.+
T Consensus 165 t~~~ 168 (492)
T COG0248 165 TERF 168 (492)
T ss_pred ehhh
Confidence 7654
No 77
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=78.75 E-value=2.6 Score=41.21 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=53.9
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEee---chhhhhhcc-----CCceEEEEeCCCCceEEEEeeCCeec
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYAL 128 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~t~lVVDiG~~~t~v~pv~~g~~~ 128 (332)
+..++-| +..-.-.+++.+++-+.+..|++ |-+++ ++-+..++. ...+++|+|||+++|.++.+.++.+.
T Consensus 78 ~i~~vAT-sAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 155 (496)
T PRK11031 78 QIRVVAT-ATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT 155 (496)
T ss_pred eEEEEEe-HHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee
Confidence 3444443 44444555666777776666655 22333 232222221 12358999999999999999888776
Q ss_pred CcceEEEcccHHHHHHHH
Q 020045 129 PHAILRLDLAGRDLTDAL 146 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~l 146 (332)
. ...+|+|.-.+++.+
T Consensus 156 ~--~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 156 S--LFSLSMGCVTWLERY 171 (496)
T ss_pred e--eeEEeccchHHHHHh
Confidence 5 356899998876543
No 78
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=77.04 E-value=2.2 Score=38.65 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=55.6
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
+..++-| +.+-.-.+++.+++.+.+..|++ +.+++..==|.|.+ ...+++++|+|+++|.++.+.++.+..
T Consensus 72 ~i~~vaT-sa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~ 149 (300)
T TIGR03706 72 EVRAVAT-AALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE 149 (300)
T ss_pred eEEEEEc-HHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE
Confidence 3444444 34434456667777776666653 34554433333321 224579999999999999998887664
Q ss_pred cceEEEcccHHHHHHHH
Q 020045 130 HAILRLDLAGRDLTDAL 146 (332)
Q Consensus 130 ~~~~~~~~GG~~i~~~l 146 (332)
...+|+|.-.+++.+
T Consensus 150 --~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 150 --GVSLPLGCVRLTEQF 164 (300)
T ss_pred --EEEEccceEEhHHhh
Confidence 456899998888765
No 79
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.91 E-value=2.8 Score=42.40 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCeEEEeechhhh----hhccCCce--EEEEeCCCCceEEEEeeCCeecC
Q 020045 86 TPAMYVAIQAVLS----LYASGRTT--GIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 86 ~~~v~~~~~~~~a----~~~~g~~t--~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
.|.-.+.+-|.+. +|-+|..+ ++++|||+.+|+++-|.+|.+..
T Consensus 253 ~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 253 KPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred CCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 3554455555444 33346666 99999999999999999887653
No 80
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=73.05 E-value=36 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=31.4
Q ss_pred EEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeec
Q 020045 90 YVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYAL 128 (332)
Q Consensus 90 ~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~ 128 (332)
.+.....||.++. .....+|||+|-+.|-.+.|.+|++.
T Consensus 145 ~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 145 VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 5677777776654 34689999999999999999999764
No 81
>PRK00976 hypothetical protein; Provisional
Probab=72.09 E-value=31 Score=31.65 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=26.2
Q ss_pred hhhhccCCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 97 LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 97 ~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
.|.+-++..+-+|+|+|+ .|....|.+|+++-
T Consensus 141 ~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvg 172 (326)
T PRK00976 141 NAYKLFGFENFIVSDISS-NTVTLLVKDGKIVG 172 (326)
T ss_pred HHHhhcCCCcEEEEeccc-cEEEEEEECCEEEc
Confidence 344456889999999999 88888999998874
No 82
>PRK10854 exopolyphosphatase; Provisional
Probab=69.40 E-value=4.2 Score=39.91 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=52.7
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeech---hhhhhccC-----CceEEEEeCCCCceEEEEeeCCeec
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA---VLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYAL 128 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~g-----~~t~lVVDiG~~~t~v~pv~~g~~~ 128 (332)
+..++-| +.+-.-.++..+++-+.+..|++ |.+++.. -+...+.- ..+++|||||+++|.++.+.++.+.
T Consensus 83 ~v~~vAT-sAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~ 160 (513)
T PRK10854 83 NVCIVGT-HTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI 160 (513)
T ss_pred eEEEEeh-HHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee
Confidence 3444443 34434555666777777766755 3344332 22222211 2358999999999999999988765
Q ss_pred CcceEEEcccHHHHHHH
Q 020045 129 PHAILRLDLAGRDLTDA 145 (332)
Q Consensus 129 ~~~~~~~~~GG~~i~~~ 145 (332)
.. ...++|.-.+++.
T Consensus 161 ~~--~S~~lG~vrl~e~ 175 (513)
T PRK10854 161 LV--ESRRMGCVSFAQL 175 (513)
T ss_pred Ee--EEEecceeeHHhh
Confidence 43 4468998777764
No 83
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=60.07 E-value=4.5 Score=37.71 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=19.9
Q ss_pred hcCcccccCccCCcChHHHHHHHHHh
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITA 276 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~ 276 (332)
...|++|||++.-+-|.++|++.+..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 34799999999999999999888743
No 84
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.06 E-value=15 Score=32.92 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=35.8
Q ss_pred hhcccccCCCeEEEeechhhhhhcc------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 78 QIMFETFNTPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 78 ~~lfe~~~~~~v~~~~~~~~a~~~~------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+-+.+++| |++.++.-+++++- +..+.+.|.+|.+ +-...|.||+++..
T Consensus 90 ~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~G 146 (291)
T PRK05082 90 QTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLTG 146 (291)
T ss_pred HHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEeeC
Confidence 3333456887 77999988887642 3467888999854 66677889987653
No 85
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=52.85 E-value=18 Score=32.60 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=37.7
Q ss_pred HhhhcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 76 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 76 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.||+++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444557887 77999988877642 3467888899864 67778889987654
No 86
>PRK09698 D-allose kinase; Provisional
Probab=51.92 E-value=23 Score=31.87 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=35.8
Q ss_pred HhhhcccccCCCeEEEeechhhhhhcc------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 76 MTQIMFETFNTPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 76 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+.+=+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.+|.++..
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~G 154 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWTG 154 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEeeC
Confidence 334443457887 77888888776531 3457888999855 66677889987643
No 87
>PRK09557 fructokinase; Reviewed
Probab=51.89 E-value=19 Score=32.46 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=36.6
Q ss_pred HhhhcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 76 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 76 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+.+-+.++.| |.+.++.-|++++- +..+.+.+.+| ..+-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig-tGiG~giv~~G~l~~G 147 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG-TGCGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEc-cceEEEEEECCEEEec
Confidence 334444556787 77899988888653 24667788887 4477777889987653
No 88
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=50.89 E-value=11 Score=34.65 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=44.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceE-EEECCCCCccccchhhHHhhcc
Q 020045 231 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKI-KVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 231 l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v-~v~~~~~~~~~~w~Gasi~a~l 306 (332)
|.+-...+|+.++ ++.+.....|++||.+.-.-+..+|.+............ .-...++..+-+|.|--++-+.
T Consensus 288 i~~Kt~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 288 ISSKTHRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhhhhHHHHHHhcc
Confidence 5555555566555 344445567999999998877778777665554432221 0012235677799997766443
No 89
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=50.18 E-value=10 Score=35.16 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=34.8
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC------CCccccchhhHHhhc
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP------ERKYSVWIGGSILAS 305 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~ 305 (332)
.++++++||.+.-.-|+++|++.+... .++++.|+ +.-+-+|.|...+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 467999999999988888888766542 34665553 334458888776644
No 90
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.45 E-value=1.1e+02 Score=27.19 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=29.5
Q ss_pred EEEeechhhhhhccC----CceEEEEeCCCCceEEEEeeCCeec
Q 020045 89 MYVAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYAL 128 (332)
Q Consensus 89 v~~~~~~~~a~~~~g----~~t~lVVDiG~~~t~v~pv~~g~~~ 128 (332)
+.+..+-.++.+++- ...++|||+|.+.|..+.|.++++.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 445555555555543 3579999999999999999888654
No 91
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=47.86 E-value=27 Score=28.99 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=34.0
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.+.|+++||.++-+-+.+.+.+-+. .+|.+... ...+-.||+++|..
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 4669999999999877777776663 35555433 44788999988753
No 92
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=44.02 E-value=86 Score=28.88 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=64.5
Q ss_pred cccCCCCCCHHHHHHHHHHHhhhhcCCCCCC---CcEEEeeCCCCCHHhHHHHhhhc--ccccCCCeEEEeechhhhhhc
Q 020045 27 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIM--FETFNTPAMYVAIQAVLSLYA 101 (332)
Q Consensus 27 p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~---~~vvl~~~~~~~~~~~~~l~~~l--fe~~~~~~v~~~~~~~~a~~~ 101 (332)
|+..---.|.+.++.+...=| +.-++.|+. -.++++-...-.+.-|..+.-+- ..+|=+.+.--.-+++.|--+
T Consensus 55 Pv~~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkG 133 (473)
T COG4819 55 PVDKQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKG 133 (473)
T ss_pred eecccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCC
Confidence 554333347778888776664 567777643 35666655444444444332211 122222222222234444334
Q ss_pred cC------CceEEE--EeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 020045 102 SG------RTTGIV--LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 142 (332)
Q Consensus 102 ~g------~~t~lV--VDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i 142 (332)
.| +..++| +|||+++|..+-+..|.+...++ +++||+.+
T Consensus 134 aGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 134 AGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred ccccchhhhhceEEEEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 43 123333 69999999999999998887666 78999843
No 93
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=16 Score=33.48 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=35.1
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC------CCccccchhhHHhhc
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP------ERKYSVWIGGSILAS 305 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~ 305 (332)
.+.++++||.+.-..|++++++.... ..++++.|+ +.-+-+|.|...|.+
T Consensus 262 ~~~lvi~GGVaaN~~LR~~l~~~~~~-----~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 262 KKELVIAGGVAANSRLREMLEEMCKE-----RGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred CCEEEEeccHHHhHHHHHHHHHHHHh-----cCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 34699999999998888888776652 134555443 334568999888865
No 94
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=42.90 E-value=74 Score=22.85 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=25.5
Q ss_pred EEEEeCCCCceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHH
Q 020045 107 GIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKIL 150 (332)
Q Consensus 107 ~lVVDiG~~~t~v~pv-~~g~~~~~~~~~~~~GG~~i~~~l~~~l 150 (332)
.+.+|+|...+.++.+ .+|..+........-+...+-+.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i 47 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLI 47 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHH
Confidence 4789999999988887 4666654433222223333444444443
No 95
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=42.48 E-value=21 Score=32.06 Aligned_cols=68 Identities=16% Similarity=0.024 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhcCCH-HHHHHHhcCcccccC-ccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHH
Q 020045 230 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI 302 (332)
Q Consensus 230 ~l~~~i~~~i~~~~~-~~r~~l~~nIvl~GG-~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 302 (332)
+|..+|...|..+.. --+..-.++|+++|| ....|.+.+++...+.- +..++..+.+..+....||++
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhcc
Confidence 455555555544321 113344678999999 67889899999876642 225666677778888888764
No 96
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=37.63 E-value=50 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 38 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 38 ~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
.++.+=+|+| ..+++|||++.-..++.+..+.+++++-+.||=
T Consensus 75 v~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 75 VLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 4444444444 467899999999999999999999999888874
No 97
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=37.63 E-value=28 Score=25.38 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=33.2
Q ss_pred cCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhccccc
Q 020045 29 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 84 (332)
Q Consensus 29 ~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~ 84 (332)
..|.+.|+..++..++.+. +.+ ++..+.-.+++. .-.-+.|++.+++.+
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRL 90 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHH
Confidence 4789999999999998865 333 344444445443 224577888888765
No 98
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=37.03 E-value=20 Score=33.43 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=20.0
Q ss_pred CcccccCccCCcChHHHHHHHH
Q 020045 253 NIVLSGGSTMFPGIADRMSKEI 274 (332)
Q Consensus 253 nIvl~GG~s~i~G~~erl~~eL 274 (332)
.|++|||++.-+-|.+||++.+
T Consensus 289 ~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 289 ELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred EEEEECCCcchHHHHHHHHHhc
Confidence 5999999999999999998877
No 99
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=36.70 E-value=2.2e+02 Score=25.82 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhhcCCCCCC--CcEEEeeCCCCCHHhHHHHhhhcccccC--CCeEEEeechhhhhhcc--CCceEEEE
Q 020045 37 DDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSLYAS--GRTTGIVL 110 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~--~~vvl~~~~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~--g~~t~lVV 110 (332)
+-+++.+..++ ++-+++.+. +.+.+..+-......-+.+.+.+-.+|. +..+++.+++.+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 56677777776 556677655 6788887877777777777777666554 34578888888888776 45899999
Q ss_pred eCCCCceEEEEeeCCeec
Q 020045 111 DSGDGVSHTVPIYEGYAL 128 (332)
Q Consensus 111 DiG~~~t~v~pv~~g~~~ 128 (332)
=-|.++..-...-||..-
T Consensus 126 iaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EecCCceeEEECCCCCcc
Confidence 999998887777888543
No 100
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=36.43 E-value=2.3e+02 Score=25.02 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=14.3
Q ss_pred ceEEEEeCCCCceEEEEeeCCe
Q 020045 105 TTGIVLDSGDGVSHTVPIYEGY 126 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv~~g~ 126 (332)
..++|||+|...| +..|.++.
T Consensus 122 ~~~vVVD~GTA~T-id~v~~~~ 142 (251)
T COG1521 122 KAVVVVDFGTATT-IDLVDEGG 142 (251)
T ss_pred CcEEEEEcCCeEE-EEEEcCCC
Confidence 3499999998855 55554443
No 101
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=35.65 E-value=51 Score=28.52 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
+.++.+=+|+| ..+++|||++....++.+..+.+++++-+.||
T Consensus 74 dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (227)
T cd08594 74 DVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILG 116 (227)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 34444444444 45789999999999999999999999888777
No 102
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=35.43 E-value=54 Score=28.98 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+-+|+| ..+++|||++....++.+..+.+++++-+.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 34455545554 457899999999999999999999999888773
No 103
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=34.80 E-value=30 Score=35.07 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=27.0
Q ss_pred CCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 54 APEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 54 ~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
..+++|||++.-..+++.....+++++=+.||
T Consensus 372 ~~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifG 403 (746)
T KOG0169|consen 372 VTSPYPVILTLENHCSPDQQAKMAQMLKEIFG 403 (746)
T ss_pred cCCCCCEEEEecccCCHHHHHHHHHHHHHHhh
Confidence 56799999999999998888888888776665
No 104
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=34.57 E-value=57 Score=28.84 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.|=+|+| ..+++|||++.-..++.+..+.+++++-+.||=
T Consensus 76 dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 34555555555 357899999999999999999999999888773
No 105
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=34.51 E-value=58 Score=28.66 Aligned_cols=43 Identities=28% Similarity=0.389 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
+.++.+=+|+| ..+++|||++--..++.+..+.+++++-+.||
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lG 116 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFG 116 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 34445544444 46789999999999999999999999988777
No 106
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=34.01 E-value=57 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+=+|+| ..+++|||++....++.+....+++++-+.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34455544554 468899999999999999999999998887773
No 107
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=33.66 E-value=54 Score=28.98 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=29.0
Q ss_pred CCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 54 APEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 54 ~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
..+++|||++.-..++.+..+.+++++-+.||=
T Consensus 87 ~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 87 KTSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999888773
No 108
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=33.46 E-value=58 Score=28.77 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 54 APEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 54 ~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
..+++|||++....++.+..+.+++++-+.||
T Consensus 85 ~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lG 116 (258)
T cd08631 85 QVSDYPVILSLENHCGVEQQQTMAQHLTEILG 116 (258)
T ss_pred cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888777
No 109
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=33.05 E-value=61 Score=28.66 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 38 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 38 ~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
.++.+=+|+| ..+++|||++....++.+..+.+++++-+.||=
T Consensus 75 v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 75 VLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 4444544444 467899999999999999999999999887773
No 110
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=32.86 E-value=62 Score=28.53 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 38 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 38 ~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
.++.+=+|+| ..+++|||++.-..++.+..+.+++++-+.||
T Consensus 75 v~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~G 116 (254)
T cd08596 75 VVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFG 116 (254)
T ss_pred HHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 4444444444 45789999999999999999999999988777
No 111
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=32.85 E-value=63 Score=28.05 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+=+|+| ..+++|||++.-..++.+..+.+++++-+.||=
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 34445544544 467899999999999999999999998887773
No 112
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=32.51 E-value=61 Score=28.65 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.|=+|+| ..+++|||++....++.+..+.+++++-+.||=
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34444544444 457899999999999999999999998887773
No 113
>PRK13324 pantothenate kinase; Reviewed
Probab=32.33 E-value=3e+02 Score=24.31 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=14.1
Q ss_pred ceEEEEeCCCCceEEEEeeCC
Q 020045 105 TTGIVLDSGDGVSHTVPIYEG 125 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv~~g 125 (332)
..+||||+|...|-=+.--+|
T Consensus 124 ~~~iViD~GTA~T~d~v~~~g 144 (258)
T PRK13324 124 KDLLIIDLGTATTFDLVTKDK 144 (258)
T ss_pred CCEEEEEcCCceEEEEEcCCC
Confidence 469999999886643332444
No 114
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=32.21 E-value=64 Score=28.04 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+=+|+| ..+++|||++.-..++.+..+.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 34445544444 357899999999999999999999998887773
No 115
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=31.37 E-value=69 Score=28.23 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
+.++.+-+|+| ..+++|||++.-..++.+....+++++-+.||
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lG 116 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILG 116 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 34455555554 45789999999999999999999999988777
No 116
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=30.30 E-value=65 Score=28.15 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=36.3
Q ss_pred cccccCc-cCCcChHHHHHHHHHhhCCC-CceEEEECCCCCccccchhhHHhhcc
Q 020045 254 IVLSGGS-TMFPGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 254 Ivl~GG~-s~i~G~~erl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
|-+-|+. -+.|+|.+++++.|..+.+. ..+|++.... .++=.||++.|..
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 3334444 67899999999999999987 3456665553 3689999998754
No 117
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=29.54 E-value=73 Score=28.25 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+=+|+| ..+++|||++.-..++.+..+.+++++-+.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 34455555554 457899999999999999999999998887773
No 118
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=29.43 E-value=67 Score=28.96 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=47.0
Q ss_pred ChHHHHHHHHhcCCHHHHHHHhcCcccccCc-cCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 230 GIHETTYNSIMKCDVDIRKDLYGNIVLSGGS-TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 230 ~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~-s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
.|...|..++.+++.+.++---=.|+.+||. .....+.+-+..+|.... -..++..+.+ ..++..||+++|.
T Consensus 243 ~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~-~f~~~~l~~~---k~ssAvgAA~laa 315 (336)
T KOG1794|consen 243 TLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTR-GFERVELYRP---KESSAVGAAILAA 315 (336)
T ss_pred HHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhccc-CccceEEEee---cccchHHHHHHhh
Confidence 3666777778888877776322248889887 456667777777776531 1124555544 4578888888865
No 119
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=29.42 E-value=95 Score=29.42 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=56.0
Q ss_pred cEEEeeCCCCC--HHhHHHHhhhcccccCCCeEEEeech--hhh-------hhcc----------C--CceEEEEeCCCC
Q 020045 59 PVLLTEAPLNP--KANREKMTQIMFETFNTPAMYVAIQA--VLS-------LYAS----------G--RTTGIVLDSGDG 115 (332)
Q Consensus 59 ~vvl~~~~~~~--~~~~~~l~~~lfe~~~~~~v~~~~~~--~~a-------~~~~----------g--~~t~lVVDiG~~ 115 (332)
.|++.....+. ...|..+-+++-++.++|.+.+-..- .+. +|.. + ..--+=||+|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~l~tr~ea~~~~~~~~~~~~~~~~~g~~lGIDiGST 154 (404)
T TIGR03286 75 AVFIATCFRCAEGALVRNEVRRYIQENTNLPVVSYSFTERTTAGELLTRMEALTTIVRRKSLLARERQEGLTLGIDSGST 154 (404)
T ss_pred eEEEeehhcccchhhHHHHHHHHHHhcCCCCEEEEecccCCchhHHHHHHHHHHHHHhhhhhhhhhccCCEEEEEEcChh
Confidence 35555555554 35667777777777788877662111 000 1100 1 123677899999
Q ss_pred ceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 116 VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 116 ~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
+|.++.+.|+..+.........--..+.+.+.+++...+.
T Consensus 155 ttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 155 TTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred heeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 9999999888666544433222234555566666665443
No 120
>PRK14878 UGMP family protein; Provisional
Probab=29.07 E-value=52 Score=30.13 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=26.7
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 290 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~ 290 (332)
.++|+++||.+.-.-+.+++.+.+++. .++++.++
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 276 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDR-----GAKFYVVP 276 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 357999999999998999998887653 23565554
No 121
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=28.73 E-value=81 Score=27.33 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+=+++| ..+++|||++.-..++.+..+.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 74 DVIEAIKEYAF------VTSPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHhc------ccCCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 34555555554 357999999999999999999999998887773
No 122
>PRK15027 xylulokinase; Provisional
Probab=28.50 E-value=43 Score=32.49 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=25.2
Q ss_pred CCeEEEeechhhhhhccCC--ceEEEEeCCCCceEEE
Q 020045 86 TPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 120 (332)
Q Consensus 86 ~~~v~~~~~~~~a~~~~g~--~t~lVVDiG~~~t~v~ 120 (332)
+|.+.-..+..+++++.|. ..-+++.+|.+.+..+
T Consensus 225 ~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~ 261 (484)
T PRK15027 225 VPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFA 261 (484)
T ss_pred CeEEecccHHHHHHhccCcccCCcEEEEecCceEEEE
Confidence 5566666688899999885 4667888888865443
No 123
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=27.73 E-value=92 Score=28.16 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=32.3
Q ss_pred EEEEeCCCCceEEEEeeCCeecCcceEEEcccHH---HHHHHHHHHHHhcCC
Q 020045 107 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR---DLTDALMKILTERGY 155 (332)
Q Consensus 107 ~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~---~i~~~l~~~l~~~~~ 155 (332)
-+=||+|+.+|.++.+.++..+. ....+.|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~~--~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELYG--YNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEEE--EEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 46689999999999998775443 233566654 556666777665443
No 124
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=27.03 E-value=54 Score=29.77 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=25.3
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 290 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~ 290 (332)
++|+++||.+.-.-+.+++.+.+... .++++.++
T Consensus 260 ~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 293 (305)
T TIGR00329 260 KELVLVGGVSANKRLREMLETLCQEL-----NVEFYYPP 293 (305)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 47999999999888888888777542 34555554
No 125
>PRK03011 butyrate kinase; Provisional
Probab=26.37 E-value=68 Score=29.92 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=31.1
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhH
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGS 301 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gas 301 (332)
+-||++||.+.-+-|.+++++.+..+. ++.+....+...+...||.
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHH
Confidence 459999999987767777777777653 5677666544445555543
No 126
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=25.52 E-value=3.1e+02 Score=25.47 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=19.4
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCC
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSS 281 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~ 281 (332)
.||+++||+. . .+.-+.+.|....|.+
T Consensus 174 ~NILisGGTG--S-GKTTlLNal~~~i~~~ 200 (355)
T COG4962 174 CNILISGGTG--S-GKTTLLNALSGFIDSD 200 (355)
T ss_pred eeEEEeCCCC--C-CHHHHHHHHHhcCCCc
Confidence 4899999998 3 3456666777766654
No 127
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=25.36 E-value=1e+02 Score=27.24 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+-+|+| ..+++|||++.-..++.+..+.+++++-+.||=
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 34455555554 457899999999999999999999988887773
No 128
>PLN02666 5-oxoprolinase
Probab=25.09 E-value=67 Score=35.35 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred ceEEEEeCCCCceEEEEeeCCe
Q 020045 105 TTGIVLDSGDGVSHTVPIYEGY 126 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv~~g~ 126 (332)
.+.+++|||+++|+|+.| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 468999999999999988 554
No 129
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.93 E-value=44 Score=32.17 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCHHhHHHHhhhccccc-C---------CCeEEEeechhhhhhc-----cCC------ceEEEEeCCCCceEEEEeeCCe
Q 020045 68 NPKANREKMTQIMFETF-N---------TPAMYVAIQAVLSLYA-----SGR------TTGIVLDSGDGVSHTVPIYEGY 126 (332)
Q Consensus 68 ~~~~~~~~l~~~lfe~~-~---------~~~v~~~~~~~~a~~~-----~g~------~t~lVVDiG~~~t~v~pv~~g~ 126 (332)
+....|+.|.+++.++. + +..-.+.|.|.+...+ -+. ..-++||||+.+|+|--+.+|.
T Consensus 191 n~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~~g~ 270 (463)
T TIGR01319 191 NPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAAAGE 270 (463)
T ss_pred CchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhccCCC
Confidence 34566777777765432 1 1222344544443332 222 3579999999999999999995
Q ss_pred ec
Q 020045 127 AL 128 (332)
Q Consensus 127 ~~ 128 (332)
+-
T Consensus 271 ~~ 272 (463)
T TIGR01319 271 LS 272 (463)
T ss_pred cc
Confidence 55
No 130
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=24.51 E-value=1.1e+02 Score=26.54 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCCCcEEEeeCCCCCHHhHHHHhhhcccccC
Q 020045 54 APEEHPVLLTEAPLNPKANREKMTQIMFETFN 85 (332)
Q Consensus 54 ~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 85 (332)
..+++|||++.-..++.+....+++++-+.||
T Consensus 85 ~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG 116 (228)
T cd08599 85 TASEYPVIITLENHLSPELQAKAAQILRETLG 116 (228)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999988888
No 131
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=24.06 E-value=22 Score=28.30 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCCCCcceeeccccccc----cCceeeeccccCCCCCCH---HHHHHHHHHHhhhhcCCC------------CCCCcEE
Q 020045 1 MVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNW---DDMEKIWHHTFYNELRVA------------PEEHPVL 61 (332)
Q Consensus 1 ~~~~~~~~~~vG~~a~~~----~~~~~~~~p~~~g~i~d~---~~~~~~l~~~~~~~l~~~------------~~~~~vv 61 (332)
+||+ .-=|+||||+.+. .+.-.++.-=.-|.++|. +.++++-..+ ..+.+. .+.|||+
T Consensus 59 ~pg~-~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la--pgl~l~P~sgddLA~rL~l~HYPvL 135 (142)
T PF11072_consen 59 LPGL-QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA--PGLPLLPVSGDDLARRLGLSHYPVL 135 (142)
T ss_pred CCCC-CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--CCCeecCCCHHHHHHHhCCCcccEE
Confidence 4677 6778999998875 222334443456777654 4444332222 122221 2468999
Q ss_pred EeeC
Q 020045 62 LTEA 65 (332)
Q Consensus 62 l~~~ 65 (332)
++..
T Consensus 136 It~~ 139 (142)
T PF11072_consen 136 ITAT 139 (142)
T ss_pred eecC
Confidence 8864
No 132
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=23.87 E-value=89 Score=27.91 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeech
Q 020045 56 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 95 (332)
Q Consensus 56 ~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~ 95 (332)
.|.-++++||.......-+++.+++ +.|++|..-+++..
T Consensus 186 aD~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 186 ADLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CCEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 4678999999999999999999987 88999998888875
No 133
>PRK13333 pantothenate kinase; Reviewed
Probab=23.79 E-value=88 Score=26.69 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=19.3
Q ss_pred echhhhhhccCCceEEEEeCCCCceEEEEeeCC
Q 020045 93 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 125 (332)
Q Consensus 93 ~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g 125 (332)
.+-++++++. ..++|||+|...| +..+.+|
T Consensus 74 vDR~~a~~aa--~~~lVIDaGTAiT-iDvv~~g 103 (206)
T PRK13333 74 IDRIAACYAI--EDGVVVDAGSAIT-VDIMSNG 103 (206)
T ss_pred HHHHHHhccC--CCeEEEEcCCceE-EEEEcCC
Confidence 3345556554 5799999998865 4444554
No 134
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.23 E-value=1.1e+02 Score=27.00 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcEEEeeCCCC-CHHhHHHHhhhcccccCC
Q 020045 38 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNT 86 (332)
Q Consensus 38 ~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~-~~~~~~~l~~~lfe~~~~ 86 (332)
.++.|=+|+| ..+++|||++.-..+ +.+..+.+++++-+.||=
T Consensus 77 v~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 77 VIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 4444444444 467899999998888 578888899988887773
No 135
>PRK13321 pantothenate kinase; Reviewed
Probab=22.72 E-value=2.5e+02 Score=24.56 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=31.3
Q ss_pred EEEeCCCCceEEEEeeCCeecCcceEEE--cccHHHHHHHHHHHHHhcC
Q 020045 108 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDALMKILTERG 154 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~~g~~~~~~~~~~--~~GG~~i~~~l~~~l~~~~ 154 (332)
+.||+|.+.+.+..+.++..+....... .-+.+.+...+.+++...+
T Consensus 3 L~IDIGnT~ik~gl~~~~~i~~~~~~~T~~~~~~~~~~~~l~~l~~~~~ 51 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGDRLLRSFRLPTDKSRTSDELGILLLSLFRHAG 51 (256)
T ss_pred EEEEECCCeEEEEEEECCEEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999998877665544322111 1355777777777776543
No 136
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=21.80 E-value=1.2e+02 Score=29.19 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=31.7
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhccc
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS 307 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~ 307 (332)
.+.|+++||.|+-+-+.+.+.+-+. .+|.+.. ...++-.||+++|...
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g------~pv~~~~---~~e~~a~GaA~~a~~~ 438 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFG------TPVDVPE---GEEGPALGAAILAAWA 438 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhC------CceeecC---CCcchHHHHHHHHHHh
Confidence 3569999999999866666665542 2343322 2336789999987653
No 137
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.33 E-value=91 Score=28.34 Aligned_cols=43 Identities=23% Similarity=0.422 Sum_probs=31.1
Q ss_pred CcccccC--ccCCc-ChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 253 NIVLSGG--STMFP-GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 253 nIvl~GG--~s~i~-G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
+|+|+|- .+..| .|.+++.+-|. .++++... .++..|+++.|.
T Consensus 265 ~IvLSGs~g~~r~~~~v~~~I~~~L~------~~V~~L~~----ksAA~G~AiIA~ 310 (326)
T TIGR03281 265 GVVLAGSGGTLREPINFSGKIKRVLS------CKVLVLDS----ESAAIGLALIAE 310 (326)
T ss_pred cEEEeCcchhccCchHHHHHHHHHhC------CCeEEecc----hhhhhhHHHHHH
Confidence 6999987 78888 77777776664 35666543 578888888875
No 138
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=21.16 E-value=1.3e+02 Score=26.72 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCC-CHHhHHHHhhhcccccCC
Q 020045 37 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNT 86 (332)
Q Consensus 37 ~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~-~~~~~~~l~~~lfe~~~~ 86 (332)
+.++.+=+|+| ..+++|||++.-..+ +.+..+.+++++-+.||=
T Consensus 76 dv~~~I~~~AF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAF------KTSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 34444444554 357999999998887 678888899988887774
No 139
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=20.38 E-value=89 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.467 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeC
Q 020045 33 VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 65 (332)
Q Consensus 33 i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~ 65 (332)
.+..+.+..+|+|+-.+.| .+|++...|.+..
T Consensus 20 ~sr~~v~~~lw~YIk~~~L-~dp~~k~~I~cD~ 51 (76)
T PF02201_consen 20 LSRSEVVKRLWQYIKENNL-QDPKDKRIIICDE 51 (76)
T ss_dssp EEHHHHHHHHHHHHHHTTS-BESSSTTEEE-TT
T ss_pred CCHHHHHHHHHHHHHHhcC-CCcccCceEecCH
Confidence 4556789999999964444 6788888888743
No 140
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=20.37 E-value=1.3e+02 Score=26.75 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcEEEeeCCCC-CHHhHHHHhhhcccccCC
Q 020045 38 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNT 86 (332)
Q Consensus 38 ~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~-~~~~~~~l~~~lfe~~~~ 86 (332)
.++.+=+|+| ..+++|||++.-..+ +.+..+.+++++-+.+|-
T Consensus 77 v~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 77 VIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 4444444454 457899999998888 578888888888777763
No 141
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.31 E-value=53 Score=29.99 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=20.8
Q ss_pred cCcccccCccCCcChHHHHHHHHHh
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITA 276 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~ 276 (332)
++|+++||.+.-.=+.+++.+.+.+
T Consensus 261 ~~v~lsGGVa~N~~l~~~l~~~~~~ 285 (314)
T TIGR03723 261 KTLVVAGGVAANSRLRERLEELAEK 285 (314)
T ss_pred CeEEEeccHHHHHHHHHHHHHHHHH
Confidence 4799999999888788888877765
No 142
>PRK13318 pantothenate kinase; Reviewed
Probab=20.27 E-value=2.7e+02 Score=24.35 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=31.0
Q ss_pred EEEeCCCCceEEEEeeCCeecCcceEEE--cccHHHHHHHHHHHHHhcC
Q 020045 108 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDALMKILTERG 154 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~~g~~~~~~~~~~--~~GG~~i~~~l~~~l~~~~ 154 (332)
|.||+|.+.+.+..+.+|..+....... .-+.+++...+.+++...+
T Consensus 3 L~IDIGnT~iK~al~d~g~i~~~~~~~t~~~~~~~~~~~~l~~l~~~~~ 51 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGGKLVAHWRISTDSRRTADEYGVWLKQLLGLSG 51 (258)
T ss_pred EEEEECCCcEEEEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999888777665422211 1244566666666665443
No 143
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=20.23 E-value=6.2e+02 Score=24.23 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=28.7
Q ss_pred ChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcCh-HHHHHHHHHhhCC
Q 020045 230 GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI-ADRMSKEITALAP 279 (332)
Q Consensus 230 ~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~-~erl~~eL~~~~~ 279 (332)
+|..++..+-...|.+.++..-=-+--|-|.-.+|+= .+.|.+.+++.+.
T Consensus 122 Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~ 172 (453)
T KOG1385|consen 122 SLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLK 172 (453)
T ss_pred hHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHh
Confidence 4667777777777777666544334445555555552 2455555555554
No 144
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=20.20 E-value=1e+02 Score=28.24 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=21.9
Q ss_pred hcCcccccCccCCcChHHHHHHHHHh
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITA 276 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~ 276 (332)
.++|+++||.+.-.-+.+++.+.+..
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~ 268 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAED 268 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 35799999999998888888887755
No 145
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=20.17 E-value=96 Score=26.79 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=21.9
Q ss_pred EEEeCCCCceEEEEee-CCeecCcceEEEc
Q 020045 108 IVLDSGDGVSHTVPIY-EGYALPHAILRLD 136 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~-~g~~~~~~~~~~~ 136 (332)
|.||+|.+++.++.+. +|.++.......+
T Consensus 3 lgiDiGTts~K~~l~d~~g~iv~~~~~~~~ 32 (245)
T PF00370_consen 3 LGIDIGTTSVKAVLFDEDGKIVASASRPYP 32 (245)
T ss_dssp EEEEECSSEEEEEEEETTSCEEEEEEEEET
T ss_pred EEEEEcccceEEEEEeCCCCEEEEEEEeee
Confidence 7899999999999885 6666655554443
No 146
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=20.03 E-value=90 Score=30.39 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=31.2
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.+.|.++||.++-+-+.+.+.+-+ +.+|.+... .-++-.||+++|..
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~------g~pv~~~~~---~e~~alGaA~~a~~ 446 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADIL------GVPVVRPKV---TETTALGAAYAAGL 446 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhc------CCeeEecCC---CcchHHHHHHHHHh
Confidence 356999999999876666666554 224444222 23567999998764
Done!