Query 020045
Match_columns 332
No_of_seqs 138 out of 1283
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_A Actin-related protein 3 100.0 3.4E-74 1.2E-78 541.8 20.9 327 3-332 68-422 (427)
2 3qb0_A Actin-related protein 4 100.0 1.8E-71 6.2E-76 528.0 24.7 324 6-332 61-498 (498)
3 2fxu_A Alpha-actin-1, actin, a 100.0 7.3E-70 2.5E-74 507.6 29.2 330 3-332 46-375 (375)
4 1k8k_B ARP2, actin-like protei 100.0 5.2E-69 1.8E-73 504.6 16.6 326 4-329 50-388 (394)
5 4fo0_A Actin-related protein 8 100.0 1.9E-67 6.5E-72 519.2 20.9 329 4-332 129-590 (593)
6 1k8k_A ARP3, actin-like protei 100.0 2.5E-64 8.5E-69 477.1 26.6 325 5-331 56-412 (418)
7 4am6_A Actin-like protein ARP8 100.0 2.4E-57 8.4E-62 434.1 23.9 316 7-332 155-652 (655)
8 1jce_A ROD shape-determining p 100.0 3.6E-31 1.2E-35 243.7 18.5 277 7-310 40-330 (344)
9 3h1q_A Ethanolamine utilizatio 99.9 6.4E-22 2.2E-26 175.9 11.1 214 24-304 58-272 (272)
10 2v7y_A Chaperone protein DNAK; 99.8 1.6E-20 5.5E-25 181.1 8.2 264 6-306 44-350 (509)
11 1dkg_D Molecular chaperone DNA 99.8 7.7E-20 2.6E-24 170.4 7.8 239 37-306 114-381 (383)
12 3qfu_A 78 kDa glucose-regulate 99.8 9.4E-19 3.2E-23 163.5 9.7 217 56-306 152-392 (394)
13 3i33_A Heat shock-related 70 k 99.7 6.6E-18 2.2E-22 158.4 9.7 216 57-306 158-400 (404)
14 1yuw_A Heat shock cognate 71 k 99.6 8.9E-16 3.1E-20 149.3 13.2 234 37-306 118-379 (554)
15 2kho_A Heat shock protein 70; 99.6 8.8E-16 3E-20 150.8 11.9 215 57-306 135-381 (605)
16 3d2f_A Heat shock protein homo 99.6 3.2E-15 1.1E-19 148.1 12.0 231 38-306 118-382 (675)
17 2ych_A Competence protein PILM 99.6 3.5E-15 1.2E-19 138.5 9.8 166 80-275 159-331 (377)
18 2fsj_A Hypothetical protein TA 99.6 2.8E-15 9.6E-20 137.5 8.0 137 6-152 77-239 (346)
19 4gni_A Putative heat shock pro 99.6 3.3E-15 1.1E-19 140.2 8.7 236 37-307 129-401 (409)
20 4a2a_A Cell division protein F 99.5 3.3E-14 1.1E-18 133.4 8.4 199 70-306 167-393 (419)
21 4b9q_A Chaperone protein DNAK; 99.4 1.8E-12 6.1E-17 127.3 14.9 237 37-306 114-381 (605)
22 2zgy_A Plasmid segregation pro 99.3 4.3E-12 1.5E-16 115.1 8.7 179 81-305 135-320 (320)
23 3js6_A Uncharacterized PARM pr 99.2 4.4E-12 1.5E-16 116.4 5.5 147 5-153 59-232 (355)
24 4apw_A ALP12; actin-like prote 99.2 1.9E-11 6.6E-16 111.1 7.6 139 4-152 61-219 (329)
25 2d0o_A DIOL dehydratase-reacti 98.9 1.7E-09 6E-14 101.3 5.5 181 93-303 390-601 (610)
26 1nbw_A Glycerol dehydratase re 98.8 1.7E-09 5.9E-14 101.7 4.9 182 93-303 392-603 (607)
27 4ehu_A Activator of 2-hydroxyi 97.5 0.00018 6E-09 63.2 7.5 169 88-305 73-253 (276)
28 2ews_A Pantothenate kinase; PA 96.4 0.017 5.8E-07 50.7 9.6 50 251-305 237-287 (287)
29 1hux_A Activator of (R)-2-hydr 96.1 0.0038 1.3E-07 54.5 4.0 47 252-306 210-256 (270)
30 2i7n_A Pantothenate kinase 1; 94.8 0.062 2.1E-06 48.6 7.1 55 248-304 303-358 (360)
31 2gup_A ROK family protein; sug 94.0 0.11 3.9E-06 45.3 7.0 53 75-130 86-143 (292)
32 3r8e_A Hypothetical sugar kina 93.8 0.25 8.4E-06 43.9 9.0 47 82-130 115-169 (321)
33 3cet_A Conserved archaeal prot 93.7 0.043 1.5E-06 48.8 3.7 26 105-130 127-152 (334)
34 3vgl_A Glucokinase; ROK family 93.0 0.66 2.2E-05 41.1 10.3 46 82-129 94-146 (321)
35 1t6c_A Exopolyphosphatase; alp 90.8 0.27 9.2E-06 43.7 5.1 74 70-146 96-177 (315)
36 2qm1_A Glucokinase; alpha-beta 90.2 0.83 2.8E-05 40.3 7.8 46 82-129 106-158 (326)
37 2aa4_A Mannac kinase, putative 89.9 0.96 3.3E-05 39.2 7.9 48 79-129 91-145 (289)
38 4db3_A Glcnac kinase, N-acetyl 89.8 1.5 5.3E-05 38.8 9.3 51 78-130 114-171 (327)
39 3vov_A Glucokinase, hexokinase 89.4 1 3.4E-05 39.5 7.7 50 79-130 93-149 (302)
40 3cer_A Possible exopolyphospha 88.8 0.52 1.8E-05 42.4 5.4 75 71-146 102-191 (343)
41 3mdq_A Exopolyphosphatase; str 87.9 0.5 1.7E-05 41.9 4.6 73 71-146 89-170 (315)
42 3hi0_A Putative exopolyphospha 84.6 1.3 4.5E-05 42.0 5.9 72 71-145 100-178 (508)
43 1u6z_A Exopolyphosphatase; alp 81.9 1.4 4.7E-05 41.9 4.9 73 71-146 96-176 (513)
44 1z05_A Transcriptional regulat 77.0 9.7 0.00033 34.9 8.9 46 82-129 206-258 (429)
45 1z6r_A MLC protein; transcript 75.9 9.5 0.00033 34.6 8.5 47 82-130 184-237 (406)
46 2yhw_A Bifunctional UDP-N-acet 75.4 15 0.00051 32.4 9.4 174 76-304 123-336 (343)
47 2ch5_A NAGK protein; transfera 75.0 42 0.0014 29.3 14.7 90 36-126 49-142 (347)
48 3aap_A Ectonucleoside triphosp 69.5 3.3 0.00011 37.2 3.5 36 105-140 140-177 (353)
49 4htl_A Beta-glucoside kinase; 64.6 4.2 0.00015 35.3 3.2 51 253-305 240-290 (297)
50 2hoe_A N-acetylglucosamine kin 54.9 7.8 0.00027 34.9 3.3 53 253-305 317-370 (380)
51 3epq_A Putative fructokinase; 50.9 8.3 0.00028 33.6 2.7 52 78-131 91-149 (302)
52 3htv_A D-allose kinase, alloki 44.8 14 0.00049 32.1 3.3 59 253-311 242-304 (310)
53 3eno_A Putative O-sialoglycopr 41.9 16 0.00055 32.3 3.1 27 251-277 250-276 (334)
54 2yhx_A Hexokinase B; transfera 40.9 23 0.00078 32.9 4.1 51 253-306 386-442 (457)
55 1saz_A Probable butyrate kinas 38.3 16 0.00056 32.9 2.7 50 253-306 298-348 (381)
56 2ivn_A O-sialoglycoprotein end 37.7 17 0.00059 32.0 2.6 35 251-290 245-279 (330)
57 3djc_A Type III pantothenate k 37.4 60 0.002 27.6 5.9 49 107-155 4-53 (266)
58 2ap1_A Putative regulator prot 36.6 7.5 0.00026 34.1 0.1 47 82-130 118-171 (327)
59 3cj1_A Ectonucleoside triphosp 36.4 27 0.00093 32.4 3.8 22 105-126 190-211 (456)
60 2h3g_X Biosynthetic protein; p 35.2 1.6E+02 0.0054 24.9 8.3 20 105-125 123-143 (268)
61 2e2o_A Hexokinase; acetate and 34.7 13 0.00046 31.9 1.4 55 59-115 62-117 (299)
62 2itm_A Xylulose kinase, xylulo 33.0 25 0.00086 32.7 3.1 47 252-306 388-434 (484)
63 2q2r_A Glucokinase 1, putative 32.0 14 0.00047 33.1 1.1 47 83-130 126-206 (373)
64 3qbx_A Anhydro-N-acetylmuramic 31.9 13 0.00045 33.4 0.9 23 252-274 285-307 (371)
65 3zx3_A Ectonucleoside triphosp 29.8 38 0.0013 31.4 3.6 71 56-126 108-202 (452)
66 1bdg_A Hexokinase; phosphotran 28.4 34 0.0012 31.7 3.0 50 254-306 396-446 (451)
67 1zbs_A Hypothetical protein PG 28.3 2E+02 0.0069 24.2 8.0 69 59-128 62-132 (291)
68 2zf5_O Glycerol kinase; hypert 28.3 57 0.0019 30.4 4.6 47 251-306 394-440 (497)
69 3vgl_A Glucokinase; ROK family 27.8 95 0.0033 26.8 5.8 46 106-151 3-49 (321)
70 3cqy_A Anhydro-N-acetylmuramic 26.7 18 0.00061 32.6 0.8 22 253-274 292-313 (370)
71 1cza_N Hexokinase type I; stru 26.5 29 0.001 35.3 2.4 50 253-306 409-459 (917)
72 2dpn_A Glycerol kinase; thermu 23.1 49 0.0017 30.8 3.1 46 252-306 400-445 (495)
73 3mcp_A Glucokinase; structural 21.6 2.7E+02 0.0092 24.6 7.6 46 103-148 7-54 (366)
74 2w40_A Glycerol kinase, putati 21.4 92 0.0031 29.0 4.6 46 252-306 409-454 (503)
No 1
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-74 Score=541.83 Aligned_cols=327 Identities=37% Similarity=0.681 Sum_probs=291.1
Q ss_pred CCCCcceeeccccccccC-ceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcc
Q 020045 3 GMGQKDAYVGDEAQSKRG-ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 81 (332)
Q Consensus 3 ~~~~~~~~vG~~a~~~~~-~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lf 81 (332)
|++.++++||++|+.++. .+++++|+++|.|.|||++|.+|+|+|++.|++++.++|+++++|+++++..|+++++++|
T Consensus 68 ~~~~~~~~vG~ea~~~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~F 147 (427)
T 3dwl_A 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMF 147 (427)
T ss_dssp -CCSSCCEETHHHHHTHHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHT
T ss_pred CcccCCeEEchHHhhCcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHH
Confidence 456679999999998875 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEeechhhhhhccC--------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhc
Q 020045 82 ETFNTPAMYVAIQAVLSLYASG--------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 153 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~g--------~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 153 (332)
|.|++|+++++.++++|+|++| .+||+|||+|++.|+|+||++|+++.++..++++||++++++|.++|..+
T Consensus 148 E~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~ 227 (427)
T 3dwl_A 148 ESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227 (427)
T ss_dssp TTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC--
T ss_pred HhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHc
Confidence 9999999999999999999998 68999999999999999999999999999999999999999999999887
Q ss_pred CCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEEC--CCCc--eEeeCCccccccccCCCCccCCCc-C
Q 020045 154 GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL--PDGQ--VITIGAERFRCPEVLFQPSMIGME-A 228 (332)
Q Consensus 154 ~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l--p~~~--~i~i~~~~~~~~E~lf~p~~~~~~-~ 228 (332)
+.. ..+.+++++||+++||++.|+.++++...........|.+ |||+ .+.++.+||.+||+||+|++++.+ .
T Consensus 228 ~~~---~~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~ 304 (427)
T 3dwl_A 228 NEP---DSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFL 304 (427)
T ss_dssp ---------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCC
T ss_pred CCC---chhHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccC
Confidence 765 3467899999999999999999888766543334566777 8887 788899999999999999999988 4
Q ss_pred CChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhC--------------CCCceEEEECCCCCcc
Q 020045 229 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA--------------PSSMKIKVVAPPERKY 294 (332)
Q Consensus 229 ~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~--------------~~~~~v~v~~~~~~~~ 294 (332)
.+|+++|.++|.+||+|+|+.|++|||||||+|++|||.+||++||+.+. |...+++|..++++.+
T Consensus 305 ~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~ 384 (427)
T 3dwl_A 305 TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384 (427)
T ss_dssp SCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTT
T ss_pred CCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCcccc
Confidence 89999999999999999999999999999999999999999999999887 4566799999999999
Q ss_pred ccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 020045 295 SVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332 (332)
Q Consensus 295 ~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~k~~ 332 (332)
++|.||||+|++++|+++||||+||+|+|+++++|+++
T Consensus 385 s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp HHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred ceecCceeeccccchhheeEEHHHHhhhChHhheeccc
Confidence 99999999999999999999999999999999999985
No 2
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-71 Score=528.04 Aligned_cols=324 Identities=32% Similarity=0.568 Sum_probs=294.3
Q ss_pred Ccceeeccc-cccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCC-cEEEeeCCCCCHHhHHHHhhhcccc
Q 020045 6 QKDAYVGDE-AQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFET 83 (332)
Q Consensus 6 ~~~~~vG~~-a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~ 83 (332)
.++++||++ +...+..+.+++|+++|.|.|||+++.+|+|+|++.|++++.++ |+|+++|++++...|+++++++||.
T Consensus 61 ~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~ 140 (498)
T 3qb0_A 61 GNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEG 140 (498)
T ss_dssp SCCEECCTTGGGSCCTTEEEEESEETTEESCHHHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred CccEEEecHHHhcCcCceEEeccCcCCEEccHHHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhh
Confidence 467899997 55567889999999999999999999999999988999999999 9999999999999999999999999
Q ss_pred cCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcC---------
Q 020045 84 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG--------- 154 (332)
Q Consensus 84 ~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~--------- 154 (332)
|++|+++++++++||+|++|.++|||||+|++.|+|+||++|+++.++..++++||++++++|.++|..++
T Consensus 141 f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~ 220 (498)
T 3qb0_A 141 MQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQ 220 (498)
T ss_dssp SCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEE
T ss_pred cCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred ---------CCccch------h-HHHHHHHHHHHccccccc--HHHHHHHhccCCCccceEECCCCceEeeCCc-ccccc
Q 020045 155 ---------YSFTTT------A-EREIVRDMKEKLAYIALD--YEQELETAKTSSAVEKSYELPDGQVITIGAE-RFRCP 215 (332)
Q Consensus 155 ---------~~~~~~------~-~~~~~~~ik~~~~~v~~~--~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~-~~~~~ 215 (332)
+.+... . +.++++++|+++|||+.+ +.++... ......+.|++|||+.|.++.+ ||.+|
T Consensus 221 k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~--~~~~~~~~yeLPDG~~i~lg~E~Rf~~p 298 (498)
T 3qb0_A 221 RKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTE--LSSTAKRSIESPWNEEIVFDNETRYGFA 298 (498)
T ss_dssp CSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHH--HHTCCCEEEECSSSCEEEECHHHHHHHH
T ss_pred cccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhh--ccCcCceEEECCCCCEEEECchHhhhCc
Confidence 233221 1 445899999999999987 5444221 1234577899999999999999 99999
Q ss_pred ccCCCCccCCC---------------------------------------------------------------------
Q 020045 216 EVLFQPSMIGM--------------------------------------------------------------------- 226 (332)
Q Consensus 216 E~lf~p~~~~~--------------------------------------------------------------------- 226 (332)
|.||+|++++.
T Consensus 299 E~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
T 3qb0_A 299 EELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRP 378 (498)
T ss_dssp HTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC-------------------------------------------
T ss_pred hhhCCHhHcCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999987643
Q ss_pred -----------cCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECC---CCC
Q 020045 227 -----------EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP---PER 292 (332)
Q Consensus 227 -----------~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~---~~~ 292 (332)
+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||+.+.| ..+++|..+ +++
T Consensus 379 ~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er 457 (498)
T 3qb0_A 379 LEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIER 457 (498)
T ss_dssp ----------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGG
T ss_pred ccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCcc
Confidence 56799999999999999999999999999999999999999999999999999 789999987 689
Q ss_pred ccccchhhHHhhcccccccccccHHHHhhcCC-cccccccC
Q 020045 293 KYSVWIGGSILASLSTFQQMWIAKAEYDESGP-SIVHRKCF 332 (332)
Q Consensus 293 ~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~-~~i~~k~~ 332 (332)
.+++|+||||+|++++|+++||||+||+|+|+ .+|+|||.
T Consensus 458 ~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc~ 498 (498)
T 3qb0_A 458 QYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRFR 498 (498)
T ss_dssp GSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTTC
T ss_pred CccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccCc
Confidence 99999999999999999999999999999999 89999994
No 3
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=7.3e-70 Score=507.64 Aligned_cols=330 Identities=88% Similarity=1.393 Sum_probs=306.3
Q ss_pred CCCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhccc
Q 020045 3 GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 82 (332)
Q Consensus 3 ~~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe 82 (332)
|++.++++||++|..++....+++|+++|.|.||+.++.+|+|+|++.|++++.++++++++|+.++...|+.+++.+||
T Consensus 46 ~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe 125 (375)
T 2fxu_A 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 125 (375)
T ss_dssp -----CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEechhHhhcCcccceeccccCCcccCHHHHHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHH
Confidence 44568899999999988889999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhH
Q 020045 83 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAE 162 (332)
Q Consensus 83 ~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~ 162 (332)
.+++++++++++|+||+|++|.++++|||+|+++|+|+||++|+++.++..++++||++++++|.++|..+++++....+
T Consensus 126 ~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~ 205 (375)
T 2fxu_A 126 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAE 205 (375)
T ss_dssp TTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHH
T ss_pred hcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999988888766667
Q ss_pred HHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcC
Q 020045 163 REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKC 242 (332)
Q Consensus 163 ~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~ 242 (332)
.+.++++|+++||++.++.+++++....+.....|.+|||+.+.++.+|+.+||.||+|.+++.+..+|.++|.++|.+|
T Consensus 206 ~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~ 285 (375)
T 2fxu_A 206 REIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC 285 (375)
T ss_dssp HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhC
Confidence 88999999999999999888877665555567889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcccccccccccHHHHhhc
Q 020045 243 DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDES 322 (332)
Q Consensus 243 ~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~ 322 (332)
|+++|+.+++|||||||+|++|||.+||++||..+.|...++++..+++|.+++|+||+++|++++|++.||||+||+|+
T Consensus 286 ~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~ 365 (375)
T 2fxu_A 286 DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEA 365 (375)
T ss_dssp CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHH
T ss_pred CHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhh
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCcccccccC
Q 020045 323 GPSIVHRKCF 332 (332)
Q Consensus 323 G~~~i~~k~~ 332 (332)
|+++++||||
T Consensus 366 G~~~~~~k~~ 375 (375)
T 2fxu_A 366 GPSIVHRKCF 375 (375)
T ss_dssp CGGGGC----
T ss_pred ChHHHhhhcc
Confidence 9999999997
No 4
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=5.2e-69 Score=504.56 Aligned_cols=326 Identities=47% Similarity=0.884 Sum_probs=164.9
Q ss_pred CCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHh-hhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhccc
Q 020045 4 MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 82 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~-~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe 82 (332)
++.++++||++|..++....+++|+++|.|.||+.++.+|+|+| ++.|++++.++++++++|++++...|+.+++++||
T Consensus 50 ~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dwd~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe 129 (394)
T 1k8k_B 50 IEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFE 129 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEChHHHhcCCCceeeccccCCEEecHHHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhh
Confidence 45578999999999888899999999999999999999999999 88999999999999999999999999999999999
Q ss_pred ccCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhH
Q 020045 83 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAE 162 (332)
Q Consensus 83 ~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~ 162 (332)
.+++++++++++|+||+|++|.++|+|||+|+++|+|+||++|+++.++..++++||++++++|.++|..+++++.+..+
T Consensus 130 ~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~ 209 (394)
T 1k8k_B 130 TYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSAD 209 (394)
T ss_dssp ------------------------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTT
T ss_pred ccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999998888876667
Q ss_pred HHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcC
Q 020045 163 REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKC 242 (332)
Q Consensus 163 ~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~ 242 (332)
.+.+++||+++||++.|+..+++...........|.+|||+.+.++.+|+.+||+||+|++++.+..+|+++|.++|.+|
T Consensus 210 ~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~ 289 (394)
T 1k8k_B 210 FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAA 289 (394)
T ss_dssp HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhC
Confidence 88999999999999998887776554444456789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhC-----------CCCceEEEECCCCCccccchhhHHhhcccccc-
Q 020045 243 DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA-----------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQ- 310 (332)
Q Consensus 243 ~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~-----------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~- 310 (332)
|+|.|+.+++|||||||+|++|||.+||++||..+. |...+++|..+++|.+++|+|||++|++++|+
T Consensus 290 ~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~ 369 (394)
T 1k8k_B 290 DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKD 369 (394)
T ss_dssp CTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC---------------------------
T ss_pred CHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCcc
Confidence 999999999999999999999999999999999987 77778999888999999999999999999999
Q ss_pred cccccHHHHhhcCCccccc
Q 020045 311 QMWIAKAEYDESGPSIVHR 329 (332)
Q Consensus 311 ~~~itr~ey~e~G~~~i~~ 329 (332)
++||||+||+|+|+++++|
T Consensus 370 ~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 370 NFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp -------------------
T ss_pred ceeecHHHHhhhCHHHHHh
Confidence 9999999999999999987
No 5
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-67 Score=519.22 Aligned_cols=329 Identities=22% Similarity=0.397 Sum_probs=263.9
Q ss_pred CCCcceeeccccccc--cCceeeeccccCCC-----------CCCHHHHHHHHHHHhhhhcCCCCCC---CcEEEeeCCC
Q 020045 4 MGQKDAYVGDEAQSK--RGILTLKYPIEHGI-----------VSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPL 67 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~--~~~~~~~~p~~~g~-----------i~d~~~~~~~l~~~~~~~l~~~~~~---~~vvl~~~~~ 67 (332)
.+.++++||++|+.. ++.+.++|||++|. +.+|+++|.+|+|+|++.|++++++ +++|+++|++
T Consensus 129 ~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~ 208 (593)
T 4fo0_A 129 SHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDI 208 (593)
T ss_dssp TTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSS
T ss_pred cccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCC
Confidence 356789999999864 67799999999994 5689999999999999999998865 8999999999
Q ss_pred CCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHH
Q 020045 68 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALM 147 (332)
Q Consensus 68 ~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~ 147 (332)
+++..|+++++++||+|+||+++++++++||+|++|.+||||||+|++.|+|+||+||+++.++..++++||++++++|.
T Consensus 209 ~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~ 288 (593)
T 4fo0_A 209 YNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFY 288 (593)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccc-----hhHHHHHHHHHHHcccccccHHHH-------------------------HH----Hh------
Q 020045 148 KILTERGYSFTT-----TAEREIVRDMKEKLAYIALDYEQE-------------------------LE----TA------ 187 (332)
Q Consensus 148 ~~l~~~~~~~~~-----~~~~~~~~~ik~~~~~v~~~~~~~-------------------------~~----~~------ 187 (332)
++|..+++.+.. ..+++++++||+++||++.|+..+ +. .+
T Consensus 289 ~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~ 368 (593)
T 4fo0_A 289 WLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFG 368 (593)
T ss_dssp HHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGC
T ss_pred HHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHHhhhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhc
Confidence 999998876543 457889999999999998653211 00 00
Q ss_pred ------------------------------------ccCCCccceEECCCCceEeeCCccccccccCCCCccC-------
Q 020045 188 ------------------------------------KTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI------- 224 (332)
Q Consensus 188 ------------------------------------~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~------- 224 (332)
.........+.+|+|..+.++.+++.+||.+|+|...
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~ 448 (593)
T 4fo0_A 369 IVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGD 448 (593)
T ss_dssp CCSSCCEEECC---------------------------------------------------------------------
T ss_pred ccccccchhhhhcccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchhccCccccccccccc
Confidence 0001123457788999999999999999999998532
Q ss_pred -------------------------CCcCCChHHHHHHHHhcCC-HHHHHHHhcCcccccCccCCcChHHHHHHHHHhhC
Q 020045 225 -------------------------GMEAAGIHETTYNSIMKCD-VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA 278 (332)
Q Consensus 225 -------------------------~~~~~~l~~~i~~~i~~~~-~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~ 278 (332)
+.+..+|+++|.++|.+|+ .|.|+.|++|||||||+|++|||.+||++||+.+.
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~ 528 (593)
T 4fo0_A 449 GLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKM 528 (593)
T ss_dssp ----------------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhC
Confidence 1235689999999999998 69999999999999999999999999999999999
Q ss_pred CCCc-----eEEEECCC---CCccccchhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 020045 279 PSSM-----KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332 (332)
Q Consensus 279 ~~~~-----~v~v~~~~---~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~k~~ 332 (332)
|... +++|+.++ ||.+++|+||||+|++++|.++||||+||+|+|+++|++||.
T Consensus 529 p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 529 PPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp CHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred cchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence 8643 58898886 899999999999999999999999999999999999999994
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=2.5e-64 Score=477.05 Aligned_cols=325 Identities=39% Similarity=0.699 Sum_probs=298.4
Q ss_pred CCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhccccc
Q 020045 5 GQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 84 (332)
Q Consensus 5 ~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~ 84 (332)
+.++++||++|...+ .+.+++|+++|.|.||+.++.+|+|+|++.|++++.++++++++|+.++...|+.+.+++||.+
T Consensus 56 ~~~~~~vG~~a~~~~-~~~~~~pi~~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~ 134 (418)
T 1k8k_A 56 DDLDFFIGDEAIEKP-TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESF 134 (418)
T ss_dssp GGGCEEEGGGGTSCT-TSEEECCEETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTS
T ss_pred cccCeEEChHHHhcC-CCEEeccccCCEECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 345699999999886 4899999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCeEEEeechhhhhhc---------cCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCC
Q 020045 85 NTPAMYVAIQAVLSLYA---------SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 85 ~~~~v~~~~~~~~a~~~---------~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 155 (332)
++++++++++|+||+|+ .+. +|+|||+|+++|+|+||.+|+++.++..++++||++++++|.++|..++.
T Consensus 135 g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~ 213 (418)
T 1k8k_A 135 NVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREV 213 (418)
T ss_dssp CCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 566 99999999999999999999999998899999999999999999998888
Q ss_pred CccchhHHHHHHHHHHHcccccccHHHHHHHhccC-CCccceEECCCCc-----eEeeCCccccccccCCCCccCCCcC-
Q 020045 156 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS-SAVEKSYELPDGQ-----VITIGAERFRCPEVLFQPSMIGMEA- 228 (332)
Q Consensus 156 ~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~-~~~~~~~~lp~~~-----~i~i~~~~~~~~E~lf~p~~~~~~~- 228 (332)
.+....+.+.++++|+++|+++.++.+++++.... ......|.+||+. .+.++.+|+.+||.||+|.+.+.+.
T Consensus 214 ~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~ 293 (418)
T 1k8k_A 214 GIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFT 293 (418)
T ss_dssp CCCGGGHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCC
T ss_pred CCCCHHHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCC
Confidence 77666778899999999999999987777654332 1234689999988 8899999999999999999888774
Q ss_pred CChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhC----------------CCCceEEEECCCCC
Q 020045 229 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA----------------PSSMKIKVVAPPER 292 (332)
Q Consensus 229 ~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~----------------~~~~~v~v~~~~~~ 292 (332)
.+|.++|.++|.+||.++|+.+++|||||||+|++|||.+||++||.... |...++++..+++|
T Consensus 294 ~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~ 373 (418)
T 1k8k_A 294 QPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQ 373 (418)
T ss_dssp CCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTC
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCcc
Confidence 79999999999999999999999999999999999999999999999875 56677899999999
Q ss_pred ccccchhhHHhhcccccccccccHHHHhhcCCccccccc
Q 020045 293 KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKC 331 (332)
Q Consensus 293 ~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~i~~k~ 331 (332)
.+++|+|||++|++++|.+.||||+||+|+|+++++|||
T Consensus 374 ~~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~ 412 (418)
T 1k8k_A 374 RYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP 412 (418)
T ss_dssp TTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCC
T ss_pred ccceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhc
Confidence 999999999999999999999999999999999999976
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=2.4e-57 Score=434.12 Aligned_cols=316 Identities=21% Similarity=0.420 Sum_probs=272.9
Q ss_pred cceeeccccccc-cCceeeeccccCCCCC----C-------HHHHHHHHHHHhhh-hcCCCCC---CCcEEEeeCCCCCH
Q 020045 7 KDAYVGDEAQSK-RGILTLKYPIEHGIVS----N-------WDDMEKIWHHTFYN-ELRVAPE---EHPVLLTEAPLNPK 70 (332)
Q Consensus 7 ~~~~vG~~a~~~-~~~~~~~~p~~~g~i~----d-------~~~~~~~l~~~~~~-~l~~~~~---~~~vvl~~~~~~~~ 70 (332)
++++||++|+.+ +..+.+++||++|.|. | |++++.+|+|+|++ .|++++. ++|+|+++|+++++
T Consensus 155 ~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~ 234 (655)
T 4am6_A 155 SKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKK 234 (655)
T ss_dssp TSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCH
T ss_pred CCEEEehHHhhCCccCeEEeccccCCEecccCCccccccccHHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCH
Confidence 689999999985 6789999999999998 8 99999999999974 8999986 79999999999999
Q ss_pred HhHHHHhhhcccccCCCeEEEeechhhhhhccC-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHH
Q 020045 71 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKI 149 (332)
Q Consensus 71 ~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~ 149 (332)
..|+++++++||.|++|++++++++++|+|++| .++|||||+|++.|+|+||++|+++.+++.++++||++++++|.++
T Consensus 235 ~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kL 314 (655)
T 4am6_A 235 SHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALF 314 (655)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHhcCC-----CccchhHHHHHHHHHHHcccc-cccHHHHHHHhccCCCccceE--ECCCC----ceEeeCCcccccccc
Q 020045 150 LTERGY-----SFTTTAEREIVRDMKEKLAYI-ALDYEQELETAKTSSAVEKSY--ELPDG----QVITIGAERFRCPEV 217 (332)
Q Consensus 150 l~~~~~-----~~~~~~~~~~~~~ik~~~~~v-~~~~~~~~~~~~~~~~~~~~~--~lp~~----~~i~i~~~~~~~~E~ 217 (332)
|..+++ ++....+.+++++||+++||| ..|+. .....| ..|++ ..+.++.|||.+||+
T Consensus 315 L~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~----------~q~~~f~~r~P~~~~~ky~i~vgdErflaPe~ 384 (655)
T 4am6_A 315 LLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVA----------VQLYNFMNRSPNQPTEKYEFKLFDEVMLAPLA 384 (655)
T ss_dssp HHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCCGGGCC----------SEEEEEEECCSSSCEEEEEEEESSHHHHHHHG
T ss_pred HHHcCCCccccCCCCcchHHHHHHHHHheEEEcccchh----------hhhhcceeccCCCCCcceEEEECCeehhCchh
Confidence 999886 456677899999999999999 44431 112222 23554 357889999999999
Q ss_pred CCCCccCCC-----------------------------------------------------------------------
Q 020045 218 LFQPSMIGM----------------------------------------------------------------------- 226 (332)
Q Consensus 218 lf~p~~~~~----------------------------------------------------------------------- 226 (332)
||+|.+++.
T Consensus 385 lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (655)
T 4am6_A 385 LFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPE 464 (655)
T ss_dssp GGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred cCChhhcccccccccccchhhhhcCccccccCCCCCCccchhHHhhhccccCCCCccHhhhhhhhhcccccccccccCCc
Confidence 999976410
Q ss_pred --------cCCChHHHHHHHHhc----CCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCC--------------
Q 020045 227 --------EAAGIHETTYNSIMK----CDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS-------------- 280 (332)
Q Consensus 227 --------~~~~l~~~i~~~i~~----~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~-------------- 280 (332)
...+|..+|.++|.+ .+...-+++++||+|+||+|++|||...|.+.++..-|.
T Consensus 465 ~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~ 544 (655)
T 4am6_A 465 NYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKL 544 (655)
T ss_dssp SCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHH
Confidence 014889999999973 244445699999999999999999987777766653321
Q ss_pred -----------------------------------------------------CceEEEECCCCC---ccccchhhHHhh
Q 020045 281 -----------------------------------------------------SMKIKVVAPPER---KYSVWIGGSILA 304 (332)
Q Consensus 281 -----------------------------------------------------~~~v~v~~~~~~---~~~~w~Gasi~a 304 (332)
-.+|+|..+|.+ .+++|+|||++|
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla 624 (655)
T 4am6_A 545 TKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLA 624 (655)
T ss_dssp HHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHT
T ss_pred HHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeee
Confidence 124788888854 899999999999
Q ss_pred cccccccccccHHHHhhcCCcccccccC
Q 020045 305 SLSTFQQMWIAKAEYDESGPSIVHRKCF 332 (332)
Q Consensus 305 ~l~~~~~~~itr~ey~e~G~~~i~~k~~ 332 (332)
++++|.++||||+||+|+|++++++||+
T Consensus 625 ~l~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 625 QIKLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp TSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred ecccHhheeecHHHHhhhcchheEeccc
Confidence 9999999999999999999999999994
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.97 E-value=3.6e-31 Score=243.71 Aligned_cols=277 Identities=14% Similarity=0.211 Sum_probs=211.9
Q ss_pred cceeeccccccc----cCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCC-CCCCcEEEeeCCCCCHHhHHHHhhhcc
Q 020045 7 KDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMF 81 (332)
Q Consensus 7 ~~~~vG~~a~~~----~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lf 81 (332)
+.++||++|... .....+.+|+++|.+.||+..+++|.+++.+..... +...++++++|+.++...|+.+.+. +
T Consensus 40 ~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~ 118 (344)
T 1jce_A 40 EILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-G 118 (344)
T ss_dssp CEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-H
T ss_pred cEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-H
Confidence 457899999875 235677899999999999999999999995533322 4468899999999999999988885 6
Q ss_pred cccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCC
Q 020045 82 ETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS 156 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~ 156 (332)
+.+|++.+.++++|.||+++++. .+.+|||+|+++|+++++..|.++. ....++||+++++.|.+.+..+. .
T Consensus 119 ~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~--~~~~~lGG~~id~~l~~~l~~~~-~ 195 (344)
T 1jce_A 119 LEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVT--WESIRIAGDEMDEAIVQYVRETY-R 195 (344)
T ss_dssp HHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHHHHHH-C
T ss_pred HHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEe--eCCCCccChhHHHHHHHHHHHHh-C
Confidence 99999999999999999999986 6899999999999999999998774 45689999999999999887531 1
Q ss_pred ccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCc--eEeeCCccccccccCCCCccCCCcCCChHHH
Q 020045 157 FTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQ--VITIGAERFRCPEVLFQPSMIGMEAAGIHET 234 (332)
Q Consensus 157 ~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~ 234 (332)
+ ......+|++|+++++...+...+.... ......+.+|. .+.++.+++. .+|+|. ...+.+.
T Consensus 196 ~--~~~~~~ae~~K~~l~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~-----~~~i~~~ 260 (344)
T 1jce_A 196 V--AIGERTAERVKIEIGNVFPSKENDELET-----TVSGIDLSTGLPRKLTLKGGEVR---EALRSV-----VVAIVES 260 (344)
T ss_dssp E--ECCHHHHHHHHHHHCBCSCCHHHHHCEE-----EEEEEETTTTEEEEEEEEHHHHH---HHTHHH-----HHHHHHH
T ss_pred c--ccCHHHHHHHHHHHhccCccccCCcceE-----EEeccccCCCCceeEEEeHHHHH---HHHHHH-----HHHHHHH
Confidence 1 1235679999999988765432110000 00011233554 3455554442 344442 1237888
Q ss_pred HHHHHhcCCHHHHHHHh-cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc-ccccc
Q 020045 235 TYNSIMKCDVDIRKDLY-GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQ 310 (332)
Q Consensus 235 i~~~i~~~~~~~r~~l~-~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~-l~~~~ 310 (332)
|.++|.+++.+.+..++ ++|+|+||+|++|||.++|++++.. + +..+.+|.+++|.||++++. ++.|+
T Consensus 261 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~------~--v~~~~~p~~ava~Gaa~~a~~~~~~~ 330 (344)
T 1jce_A 261 VRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGI------S--VIRSEEPLTAVAKGAGMVLDKVNILK 330 (344)
T ss_dssp HHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSS------C--EEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred HHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCC------C--ccccCChHHHHHHHHHHHHhChHHHH
Confidence 99999999988888888 7999999999999999999999842 2 33456889999999999998 45553
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.86 E-value=6.4e-22 Score=175.90 Aligned_cols=214 Identities=15% Similarity=0.144 Sum_probs=160.8
Q ss_pred eeccccCCCCCCHHHHHHHHHHHhhhhcCC-CCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhcc
Q 020045 24 LKYPIEHGIVSNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 102 (332)
Q Consensus 24 ~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~ 102 (332)
..+|+++|.+.||+..+.+|++++...... ......++++.|..+....++ .++.+++.++++...+..++.|+++++
T Consensus 58 ~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~-~~~~~~~~~g~~~~~i~~e~~A~a~~~ 136 (272)
T 3h1q_A 58 WASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAE-ACGHVVAGAGLELVTLVDEPVAAARAL 136 (272)
T ss_dssp ECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTT-HHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred cccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHH-HHHHHHHHcCCeeeecccHHHHHHHHH
Confidence 346899999999999999999998643322 223356777777776666665 455567999999999999999999999
Q ss_pred CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHH
Q 020045 103 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQ 182 (332)
Q Consensus 103 g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~ 182 (332)
+..+++|||+|+++|+++++.+|.++.. ..+++||.++++.+.+.+.. +.+.++++|++++.- .++.+
T Consensus 137 ~~~~~~viDiGggst~~~~~~~g~~~~~--~~~~~Gg~~~~~~l~~~l~~---------~~~~ae~~k~~~~~~-~~~~~ 204 (272)
T 3h1q_A 137 GINDGIVVDIGGGTTGIAVIEKGKITAT--FDEPTGGTHLSLVLAGSYKI---------PFEEAETIKKDFSRH-REIMR 204 (272)
T ss_dssp TCSSEEEEEECSSCEEEEEEETTEEEEE--CCBSCCHHHHHHHHHHHHTC---------CHHHHHHHHHSSTTH-HHHHH
T ss_pred cCCCEEEEEECCCcEEEEEEECCEEEEE--ecCCCcHHHHHHHHHHHhCC---------CHHHHHHHHHhcCCH-HHHHH
Confidence 9999999999999999999999988743 55899999999999888742 346788888876511 01100
Q ss_pred HHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccC
Q 020045 183 ELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTM 262 (332)
Q Consensus 183 ~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~ 262 (332)
- .+.++ ..+.+.+.+.+.+++ ..++|+|+||+|+
T Consensus 205 ~-------------------------------~~~~~---------~~i~~~i~~~l~~~~------~~~~ivL~GG~a~ 238 (272)
T 3h1q_A 205 V-------------------------------VRPVI---------EKMALIVKEVIKNYD------QTLPVYVVGGTAY 238 (272)
T ss_dssp H-------------------------------HHHHH---------HHHHHHHHHHTTTSC------SSCCEEEESGGGG
T ss_pred H-------------------------------HHHHH---------HHHHHHHHHHHHhcC------CCCEEEEECCccc
Confidence 0 00111 126667777777665 1358999999999
Q ss_pred CcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhh
Q 020045 263 FPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 263 i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
+|||.+++++++.. ++..+.+|.+++|.||+++|
T Consensus 239 ~~~l~~~l~~~l~~--------~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 239 LTGFSEEFSRFLGK--------EVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp STTHHHHHHHHHSS--------CCBCCSSGGGHHHHHHHTTC
T ss_pred hhhHHHHHHHHhCC--------CccccCChHHHHHHHHHhcC
Confidence 99999999999832 33446789999999999875
No 10
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.81 E-value=1.6e-20 Score=181.11 Aligned_cols=264 Identities=17% Similarity=0.220 Sum_probs=174.1
Q ss_pred Ccceeecccccccc--C---ceeeec----ccc---CCCCCCH-HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCC
Q 020045 6 QKDAYVGDEAQSKR--G---ILTLKY----PIE---HGIVSNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNP 69 (332)
Q Consensus 6 ~~~~~vG~~a~~~~--~---~~~~~~----p~~---~g~i~d~-~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~ 69 (332)
..+++||++|.... + ...+++ |+. +|.-.+. +....+++++.. +.++ .....+++++|..++
T Consensus 44 ~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~~~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~~~~~VitvPa~~~ 121 (509)
T 2v7y_A 44 NGERLVGEVAKRQAITNPNTIISIKRHMGTDYKVEIEGKQYTPQEISAIILQYLKSYAEDYLG--EPVTRAVITVPAYFN 121 (509)
T ss_dssp SSSEEESHHHHTTTTTCSSEEECGGGTTTSCCCEEETTEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCC
T ss_pred CCcEEECHHHHHhHHhCCCcHHHHHHhcCCCcEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCC
Confidence 35678999987641 1 123333 565 6642221 223333444321 1232 234789999999999
Q ss_pred HHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHH
Q 020045 70 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRD 141 (332)
Q Consensus 70 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~--~g~~-~~~~~~~~~~GG~~ 141 (332)
...|+.+.+. ++.+|++.+.++++|.||++++|. .+.+|+|+|+++|+++.+. +|.. +.......++||++
T Consensus 122 ~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d 200 (509)
T 2v7y_A 122 DAQRQATKDA-GRIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDD 200 (509)
T ss_dssp HHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHH
T ss_pred HHHHHHHHHH-HHHcCCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHH
Confidence 9999988886 488999999999999999999986 4799999999999999876 4533 33334456899999
Q ss_pred HHHHHHHHHHhc-----CCCccchh-----HHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECC------CC---
Q 020045 142 LTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP------DG--- 202 (332)
Q Consensus 142 i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------~~--- 202 (332)
+++.|.+++..+ +.++.... -...+|++|+.++... ...+.+| +|
T Consensus 201 ~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~~ 264 (509)
T 2v7y_A 201 FDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVT----------------QTQISLPFISANENGPLH 264 (509)
T ss_dssp HHHHHHHHHHHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCS----------------EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cEEEEEeccccCCCCCee
Confidence 999998887653 33332110 1345667777765432 1122222 22
Q ss_pred ceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCc
Q 020045 203 QVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM 282 (332)
Q Consensus 203 ~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~ 282 (332)
..+.++.+.+ |.+|.|. ...+.+.|.++|..+. +....+++|+|+||+|++|++.+++++.+..
T Consensus 265 ~~~~itr~~f---e~l~~~~-----~~~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~------ 328 (509)
T 2v7y_A 265 LEMTLTRAKF---EELSAHL-----VERTMGPVRQALQDAG--LTPADIDKVILVGGSTRIPAVQEAIKRELGK------ 328 (509)
T ss_dssp EEEEEEHHHH---HHHTHHH-----HHTTHHHHHHHHHHHT--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSS------
T ss_pred EEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CChhHCcEEEEECCcccChHHHHHHHHHhCC------
Confidence 1234444333 2344442 1236777777777654 2334568999999999999999999998842
Q ss_pred eEEEECCCCCccccchhhHHhhcc
Q 020045 283 KIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 283 ~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.+..+.+|..++|.||+++|..
T Consensus 329 --~~~~~~~p~~aVa~Gaa~~a~~ 350 (509)
T 2v7y_A 329 --EPHKGVNPDEVVAIGAAIQGGV 350 (509)
T ss_dssp --CCBCCSCTTTHHHHHHHHHHHH
T ss_pred --CcCcCCCchhhhHhhHHHHHHH
Confidence 2334568899999999999864
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.79 E-value=7.7e-20 Score=170.38 Aligned_cols=239 Identities=15% Similarity=0.128 Sum_probs=160.8
Q ss_pred HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCCc------eE
Q 020045 37 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------TG 107 (332)
Q Consensus 37 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------t~ 107 (332)
+....+++++.. +.++ .....+++++|..++...|+.+.+. ++.+|++.+.++++|.||+++++.. +.
T Consensus 114 ~i~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r~~~~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~ 190 (383)
T 1dkg_D 114 QISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTI 190 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SCCCEEEECBCTTCCHHHHHHHHHH-HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHHHhccCCCCcEE
Confidence 344555565542 2333 2346799999999999999988887 4889999999999999999988753 78
Q ss_pred EEEeCCCCceEEEEeeCC------ee-cCcceEEEcccHHHHHHHHHHHHHhc-----CCCccchh-----HHHHHHHHH
Q 020045 108 IVLDSGDGVSHTVPIYEG------YA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMK 170 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~~g------~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik 170 (332)
+|+|+|+++|+++.+..+ .. +.......++||+++++.|.+++..+ +.++.... -...+|++|
T Consensus 191 lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K 270 (383)
T 1dkg_D 191 AVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAK 270 (383)
T ss_dssp EEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHH
Confidence 999999999999988644 22 12223446899999999999888653 33332210 135577788
Q ss_pred HHcccccccHHHHHHHhccCCCccceEECCCC-c--eEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHH
Q 020045 171 EKLAYIALDYEQELETAKTSSAVEKSYELPDG-Q--VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIR 247 (332)
Q Consensus 171 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~-~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r 247 (332)
++++..... .-..+..+..++| . .+.++.+.+ |.+|+|. ...+.+.|.++|.+++. .
T Consensus 271 ~~ls~~~~~----------~i~i~~~~~~~~G~~~~~~~it~~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~--~ 330 (383)
T 1dkg_D 271 IELSSAQQT----------DVNLPYITADATGPKHMNIKVTRAKL---ESLVEDL-----VNRSIELLKVALQDAGL--S 330 (383)
T ss_dssp HHTTSSSEE----------EEEEEEEEEETTEEEEEEEEEEHHHH---HHHSHHH-----HHHHHHHHHHHHHTTTC--C
T ss_pred HHhCCCCce----------EEEEecccccCCCCeeEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--C
Confidence 777644210 0000011223334 1 234444433 2344442 12366777777777642 2
Q ss_pred HHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 248 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 248 ~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
....++|+|+||+|++||+.+++++++.. ++..+.+|.+++|.||+++|.+
T Consensus 331 ~~~i~~IvL~GG~s~~p~l~~~l~~~~~~--------~v~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp TTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCBCSSCTTTHHHHHHHHHTTT
T ss_pred HhhCCEEEEecCccccHHHHHHHHHHhCC--------CCCCCcChHHHHHHHHHHHHHh
Confidence 34468999999999999999999999842 2345678899999999999875
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.76 E-value=9.4e-19 Score=163.52 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=142.1
Q ss_pred CCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCCc------eEEEEeCCCCceEEEEee--CCee
Q 020045 56 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVSHTVPIY--EGYA 127 (332)
Q Consensus 56 ~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------t~lVVDiG~~~t~v~pv~--~g~~ 127 (332)
.-..+++++|+.++...|+.+.+.+ +.+|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. ++..
T Consensus 152 ~~~~~vitvP~~~~~~~r~~~~~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~ 230 (394)
T 3qfu_A 152 KVTHAVVTVPAYFNDAQRQATKDAG-TIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVF 230 (394)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEE
Confidence 3468999999999999999887776 889999999999999999998753 459999999999998775 3322
Q ss_pred -cCcceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCccce
Q 020045 128 -LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 196 (332)
Q Consensus 128 -~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (332)
+.......++||+++++.|.+++..+ +.+...... ...++++|+.+... ....
T Consensus 231 ~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~~~ 294 (394)
T 3qfu_A 231 EVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQ----------------MSTR 294 (394)
T ss_dssp EEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTC----------------SEEE
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccC----------------CcEE
Confidence 22223447899999999998877431 222211000 12234444433211 1112
Q ss_pred EECC---CCce--EeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHH
Q 020045 197 YELP---DGQV--ITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 271 (332)
Q Consensus 197 ~~lp---~~~~--i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~ 271 (332)
+.++ ++.. +.+..+.+ |.++.|. ...+.+.|.+.|.+...+ ....++|+|+||+|++|++.++|+
T Consensus 295 ~~~~~~~~~~~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~ 364 (394)
T 3qfu_A 295 IEIDSFVDGIDLSETLTRAKF---EELNLDL-----FKKTLKPVEKVLQDSGLE--KKDVDDIVLVGGSTRIPKVQQLLE 364 (394)
T ss_dssp EEEEEEETTEEEEEEEEHHHH---HHHHHHH-----HHHTHHHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHH
T ss_pred EEEEeccCCceeEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHH
Confidence 2221 2322 22333222 2223221 112566666777655432 345689999999999999999999
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 272 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 272 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+.+.. .++..+.+|..++|.||+++|.+
T Consensus 365 ~~~~~-------~~v~~~~~p~~ava~Gaa~~a~~ 392 (394)
T 3qfu_A 365 SYFDG-------KKASKGINPDEAVAYGAAVQAGV 392 (394)
T ss_dssp HHTTT-------CCCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHcCC-------CCCCCCcCHHHHHHHHHHHHHHh
Confidence 88732 23445668899999999999864
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.73 E-value=6.6e-18 Score=158.39 Aligned_cols=216 Identities=19% Similarity=0.228 Sum_probs=141.4
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCCc---------eEEEEeCCCCceEEEEee--CC
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT---------TGIVLDSGDGVSHTVPIY--EG 125 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~---------t~lVVDiG~~~t~v~pv~--~g 125 (332)
...+++++|+.++...|+.+.+. ++.+|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. ++
T Consensus 158 ~~~~vitvPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~ 236 (404)
T 3i33_A 158 VHSAVITVPAYFNDSQRQATKDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG 236 (404)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETT
T ss_pred CCcEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCC
Confidence 46799999999999999987777 6889999999999999999998743 359999999999999884 44
Q ss_pred ee-cCcceEEEcccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHHHHcccccccHHHHHHHhccCCCcc
Q 020045 126 YA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVE 194 (332)
Q Consensus 126 ~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 194 (332)
.. +.......++||+++++.|.+.+..+ +..+..... ...++++|+.+... ..
T Consensus 237 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~ 300 (404)
T 3i33_A 237 IFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSS----------------TQ 300 (404)
T ss_dssp EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTS----------------SE
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcC----------------cc
Confidence 32 33334447899999999998877431 222211100 12344444443211 11
Q ss_pred ceEEC---CCCce--EeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHH
Q 020045 195 KSYEL---PDGQV--ITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 269 (332)
Q Consensus 195 ~~~~l---p~~~~--i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~er 269 (332)
..+.+ .++.. +.+..+.+ |.++.|. ...+.+.|.+.|..... .....++|+|+||+|++|++.++
T Consensus 301 ~~~~~~~~~~g~~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~l~~~ 370 (404)
T 3i33_A 301 ASIEIDSLYEGVDFYTSITRARF---EELNADL-----FRGTLEPVEKALRDAKL--DKGQIQEIVLVGGSTRIPKIQKL 370 (404)
T ss_dssp EEEEEEEEETTEEEEEEEEHHHH---HHHTHHH-----HHHTHHHHHHHHHHHTC--CGGGCCEEEEESGGGGCHHHHHH
T ss_pred eEEEEeeccCCceeEEEEcHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--CHhhCCEEEEECCccccHHHHHH
Confidence 11221 12322 23333222 2233331 11255666666655322 22445789999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 270 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 270 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
|++.+... ++..+.+|..+++.||+++|.+
T Consensus 371 l~~~~~~~-------~v~~~~~p~~ava~Gaa~~a~~ 400 (404)
T 3i33_A 371 LQDFFNGK-------ELNKSINPDEAVAYGAAVQAAI 400 (404)
T ss_dssp HHHHTTTC-------CCBCSSCTTTHHHHHHHHHHHH
T ss_pred HHHHcCCC-------CCCCCcCHHHHHHHHHHHHHHH
Confidence 99887321 3445668899999999999875
No 14
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.64 E-value=8.9e-16 Score=149.28 Aligned_cols=234 Identities=16% Similarity=0.181 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-------ce
Q 020045 37 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TT 106 (332)
Q Consensus 37 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~t 106 (332)
+....+++++.. +.++. .-..+++++|..++...|+.+.+. ++.+|++.+.++++|.||++++|. .+
T Consensus 118 ei~a~~L~~lk~~ae~~lg~--~v~~~VitVPa~f~~~qr~a~~~A-~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~ 194 (554)
T 1yuw_A 118 EVSSMVLTKMKEIAEAYLGK--TVTNAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKKVGAERN 194 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--CCCEEEEEECTTCCHHHHHHHHHH-HHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcE
Confidence 334455555432 33432 235799999999999999888775 588999999999999999998873 46
Q ss_pred EEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHHHHh-----cCCCccchh-----HHHHHHHHHHHc
Q 020045 107 GIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTA-----EREIVRDMKEKL 173 (332)
Q Consensus 107 ~lVVDiG~~~t~v~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~-----~~~~~~~ik~~~ 173 (332)
.+|+|+|+++++|+.+. +|.. +.......++||+++++.|.+++.. .+.++.... -...+|++|+.+
T Consensus 195 vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~l 274 (554)
T 1yuw_A 195 VLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTL 274 (554)
T ss_dssp EEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhc
Confidence 89999999999999886 6743 3334455689999999999887753 233332111 023455666655
Q ss_pred ccccccHHHHHHHhccCCCccceEECC---CCc--eEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHH
Q 020045 174 AYIALDYEQELETAKTSSAVEKSYELP---DGQ--VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRK 248 (332)
Q Consensus 174 ~~v~~~~~~~~~~~~~~~~~~~~~~lp---~~~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~ 248 (332)
+... ...+.++ +|. .+.+..+.+ |.++.|. ...+.+.|.+++.... +..
T Consensus 275 s~~~----------------~~~i~i~~~~~g~~~~~~ltr~~~---e~l~~~~-----~~~i~~~i~~~L~~a~--~~~ 328 (554)
T 1yuw_A 275 SSST----------------QASIEIDSLYEGIDFYTSITRARF---EELNADL-----FRGTLDPVEKALRDAK--LDK 328 (554)
T ss_dssp TTSS----------------EEEEEETTCSSSCCEEEEEEHHHH---HHHTHHH-----HHHTTHHHHHHHHHTT--CCG
T ss_pred ccCc----------------eEEEEEeeccCCceEEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCh
Confidence 4221 1222322 222 222333222 1233321 0114455666665442 122
Q ss_pred HHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 249 DLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 249 ~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.-.+.|+|+||+|++|++.+++++.+... ++..+.+|..+++.||+++|..
T Consensus 329 ~~i~~VvLvGG~srip~v~~~l~~~f~~~-------~v~~~~np~~aVA~Gaa~~a~~ 379 (554)
T 1yuw_A 329 SQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAAI 379 (554)
T ss_dssp GGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred hhCcEEEEECCcccChHHHHHHHHHcCCC-------ccccCCCchhHHHHHHHHHHHH
Confidence 34578999999999999999999877432 2334568899999999999863
No 15
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.63 E-value=8.8e-16 Score=150.76 Aligned_cols=215 Identities=17% Similarity=0.198 Sum_probs=146.5
Q ss_pred CCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC------ceEEEEeCCCCceEEEEee------C
Q 020045 57 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY------E 124 (332)
Q Consensus 57 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~t~lVVDiG~~~t~v~pv~------~ 124 (332)
-..+++++|..++...|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +
T Consensus 135 v~~~VitVPa~f~d~qr~a~~~A~-~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~ 213 (605)
T 2kho_A 135 VTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGE 213 (605)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHH-HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTS
T ss_pred CcEEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCC
Confidence 457999999999999998877775 77999999999999999998874 3489999999999999886 3
Q ss_pred Cee-cCcceEEEcccHHHHHHHHHHHHHhc-----CCCccchh-----HHHHHHHHHHHcccccccHHHHHHHhccCCCc
Q 020045 125 GYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAV 193 (332)
Q Consensus 125 g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 193 (332)
|.. +.......++||+++++.|.+++..+ +.++.... -...+|++|+.++...
T Consensus 214 g~~~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~---------------- 277 (605)
T 2kho_A 214 KTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ---------------- 277 (605)
T ss_dssp CEEEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS----------------
T ss_pred CeEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------
Confidence 432 23333446899999999998877542 33332210 0234566666654321
Q ss_pred cceEECC------CC-c--eEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCc
Q 020045 194 EKSYELP------DG-Q--VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 264 (332)
Q Consensus 194 ~~~~~lp------~~-~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~ 264 (332)
...+.+| +| . .+.+....+ |.++.|. ...+.+.|.++|..... ...-++.|+|+||+|++|
T Consensus 278 ~~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~-----~~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~srip 347 (605)
T 2kho_A 278 QTDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDL-----VNRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMP 347 (605)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEHHHH---HTTCCST-----TGGGTSHHHHHHHTTTC--CTTTCSEEEEESGGGGSH
T ss_pred ceEEEecccccCCCCceEEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--ChhhCceEEEECCcccCh
Confidence 1122221 22 1 123333333 2344432 12267778888876642 223357899999999999
Q ss_pred ChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 265 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 265 G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
++.+++++.+.. .+....+|..+++.||+++|..
T Consensus 348 ~v~~~l~~~fg~--------~~~~~~npd~aVA~GAa~~a~~ 381 (605)
T 2kho_A 348 MVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp HHHHHHHHHHSS--------CCBCSSCTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC--------CcCcCCCcchHHHHHHHHHHHH
Confidence 999999988842 1234568899999999999874
No 16
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.60 E-value=3.2e-15 Score=148.12 Aligned_cols=231 Identities=10% Similarity=0.151 Sum_probs=150.6
Q ss_pred HHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC----------
Q 020045 38 DMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR---------- 104 (332)
Q Consensus 38 ~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~---------- 104 (332)
....+|+++.. ..++. .-..+|+++|..++...|+.+.+.+ +..|++.+.++++|.||++++|.
T Consensus 118 i~a~~L~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~ 194 (675)
T 3d2f_A 118 LAAMFIDKVKDTVKQDTKA--NITDVCIAVPPWYTEEQRYNIADAA-RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEE 194 (675)
T ss_dssp HHHHHHHHHHHHHHHHHCS--CCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEEcchHHHHHHHhhhccccccccC
Confidence 34445555432 23442 2357999999999999999888765 78999999999999999998742
Q ss_pred --ceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHHHHh-----cCCCccchhH-----HHHHHHH
Q 020045 105 --TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REIVRDM 169 (332)
Q Consensus 105 --~t~lVVDiG~~~t~v~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~~~~i 169 (332)
.+.+|+|+|+++++|+.+. +|.. +.......++||+++++.|.+++.. .+.++..... ...++++
T Consensus 195 ~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~a 274 (675)
T 3d2f_A 195 KPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKL 274 (675)
T ss_dssp CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999885 6654 3434445789999999999888753 2333221100 2345566
Q ss_pred HHHcccccccHHHHHHHhccCCCccceEECC---CCc--eEeeCCccc-cccccCCCCccCCCcCCChHHHHHHHHhcCC
Q 020045 170 KEKLAYIALDYEQELETAKTSSAVEKSYELP---DGQ--VITIGAERF-RCPEVLFQPSMIGMEAAGIHETTYNSIMKCD 243 (332)
Q Consensus 170 k~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp---~~~--~i~i~~~~~-~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~ 243 (332)
|+.++... ...+.++ +|. .+.+..+.+ .+.+.++.. +.+.|.+++....
T Consensus 275 K~~Ls~~~----------------~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~---------i~~~i~~~L~~a~ 329 (675)
T 3d2f_A 275 KKVLSANT----------------NAPFSVESVMNDVDVSSQLSREELEELVKPLLER---------VTEPVTKALAQAK 329 (675)
T ss_dssp HHHHHHCS----------------EEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTT---------TTHHHHHHHHHHT
T ss_pred HHhcCcCC----------------ceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHhC
Confidence 66543211 1122222 121 233333322 122223332 5666666665542
Q ss_pred HHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 244 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 244 ~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
. ...-++.|+|+||+|++|++.++|++.+.. .+..+.+|..+++.||+++|..
T Consensus 330 l--~~~~I~~VvLvGGssriP~v~~~l~~~fg~--------~~~~~~nPdeaVA~GAa~~a~~ 382 (675)
T 3d2f_A 330 L--SAEEVDFVEIIGGTTRIPTLKQSISEAFGK--------PLSTTLNQDEAIAKGAAFICAI 382 (675)
T ss_dssp C--CGGGCCEEEEESGGGGSHHHHHHHHHHHTS--------CEECCSCTTTHHHHHHHHHHHH
T ss_pred C--ChhhCcEEEEECCCccChHHHHHHHHhcCC--------CccccCCcchHHHHHHHHHHHH
Confidence 1 112357899999999999999999988832 2345678899999999999863
No 17
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.58 E-value=3.5e-15 Score=138.49 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=105.0
Q ss_pred cccccCCCeEEEeechhhhhhccC-------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHh
Q 020045 80 MFETFNTPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE 152 (332)
Q Consensus 80 lfe~~~~~~v~~~~~~~~a~~~~g-------~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~ 152 (332)
+++..|++...+..+|+|++.+++ ..+.+|||+|+++|+++.+.+|.++. ....++||+++++.+.+.+.
T Consensus 159 ~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~i~~~i~~~~~- 235 (377)
T 2ych_A 159 ALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKDFTEAIARSFN- 235 (377)
T ss_dssp HHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHHHHHHTT-
T ss_pred HHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHHHHHHHHHHHhC-
Confidence 458899999999999999999874 23469999999999999999998875 45689999999999887431
Q ss_pred cCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChH
Q 020045 153 RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIH 232 (332)
Q Consensus 153 ~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~ 232 (332)
.+.+.+|++|+++++...+..++ ...+.+++ ..+.++.+.+ .|+ ..|. ...+.
T Consensus 236 --------~~~~~aE~~K~~~~~~~~~~~~~----------~~~i~~~~-~~~~i~~~~~--~~~-i~~~-----~~~i~ 288 (377)
T 2ych_A 236 --------LDLLAAEEVKRTYGMATLPTEDE----------ELLLDFDA-ERERYSPGRI--YDA-IRPV-----LVELT 288 (377)
T ss_dssp --------CCHHHHHHHHHHTC------------------------------------CH--HHH-HHHH-----HHHHH
T ss_pred --------CCHHHHHHHHhhccccccccccc----------cccccccc-ccccCCHHHH--HHH-HHHH-----HHHHH
Confidence 13567899999888664321111 01111221 1122221111 111 1110 11255
Q ss_pred HHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHH
Q 020045 233 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT 275 (332)
Q Consensus 233 ~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~ 275 (332)
+.|.+++..++...+....++|+||||+|++||+.+++++.+.
T Consensus 289 ~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 289 QELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp HHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 6666666655444556677899999999999999999999984
No 18
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.57 E-value=2.8e-15 Score=137.50 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=105.2
Q ss_pred CcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhc-CCCCCCCcEE--EeeCCCCCHHhHHHHhhhccc
Q 020045 6 QKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVL--LTEAPLNPKANREKMTQIMFE 82 (332)
Q Consensus 6 ~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l-~~~~~~~~vv--l~~~~~~~~~~~~~l~~~lfe 82 (332)
.+.|.||++|. +|+++|.+.| +..+.++.+.+.+.. ........++ ++.|......+|+.+.+.+..
T Consensus 77 ~~~~~vG~~A~---------~~l~~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~ 146 (346)
T 2fsj_A 77 YGKYASGNNIR---------VPQGDGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALEN 146 (346)
T ss_dssp EGGGCCSSCCB---------CCSSTTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTT
T ss_pred CcEEEEcccee---------cccCCCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcC
Confidence 46788998877 8999999988 777778888775543 1112345688 899988888888877777544
Q ss_pred c-------------cCCCeEEEeechhhhhhcc--C-----C-ceEEEEeCCCCceEEEEee--CCeecCcceEEEcccH
Q 020045 83 T-------------FNTPAMYVAIQAVLSLYAS--G-----R-TTGIVLDSGDGVSHTVPIY--EGYALPHAILRLDLAG 139 (332)
Q Consensus 83 ~-------------~~~~~v~~~~~~~~a~~~~--g-----~-~t~lVVDiG~~~t~v~pv~--~g~~~~~~~~~~~~GG 139 (332)
. +.+..+.++++|.+|++++ + . .+.+|||+|+++|+|+.+. +|.++.......++||
T Consensus 147 ~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg 226 (346)
T 2fsj_A 147 KVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGV 226 (346)
T ss_dssp EEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCH
T ss_pred CCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhH
Confidence 2 2357799999999999974 2 1 3459999999999999998 7877776667889999
Q ss_pred HHHHHHHHHHHHh
Q 020045 140 RDLTDALMKILTE 152 (332)
Q Consensus 140 ~~i~~~l~~~l~~ 152 (332)
+++++.+.+.+++
T Consensus 227 ~~i~~~I~~~i~~ 239 (346)
T 2fsj_A 227 GDAISALSRKIAK 239 (346)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998777654
No 19
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.57 E-value=3.3e-15 Score=140.22 Aligned_cols=236 Identities=14% Similarity=0.153 Sum_probs=147.0
Q ss_pred HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCCc--------
Q 020045 37 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-------- 105 (332)
Q Consensus 37 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-------- 105 (332)
+....+++++.. ..++ .....++++.|..++...|+.+.+.+ +..|+..+.++++|.||+++++..
T Consensus 129 ev~~~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~ 205 (409)
T 4gni_A 129 EIATRYLRRLVGAASEYLG--KKVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATISDK 205 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------CCE
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCCCCC
Confidence 344555555542 2333 34567999999999999998877775 779999999999999999999764
Q ss_pred eEEEEeCCCCceEEEEe--eCCee-cCcceEEEcccHHHHHHHHHHHHHhcC---CC--ccchhHH-------HHHHHHH
Q 020045 106 TGIVLDSGDGVSHTVPI--YEGYA-LPHAILRLDLAGRDLTDALMKILTERG---YS--FTTTAER-------EIVRDMK 170 (332)
Q Consensus 106 t~lVVDiG~~~t~v~pv--~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~---~~--~~~~~~~-------~~~~~ik 170 (332)
+.+|+|+|+++|+++.+ .++.. +.......++||+++++.|.+.+..+. .. ....... ..++++|
T Consensus 206 ~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K 285 (409)
T 4gni_A 206 IIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTK 285 (409)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHH
Confidence 59999999999999986 33321 222223478999999999988876421 00 1111111 1344444
Q ss_pred HHcccccccHHHHHHHhccCCCccceEECC---CCc--eEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHH
Q 020045 171 EKLAYIALDYEQELETAKTSSAVEKSYELP---DGQ--VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVD 245 (332)
Q Consensus 171 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp---~~~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~ 245 (332)
+.+... ....+.++ ++. .+.+....+ |.++.|. ...+.+.|.+.|.+..
T Consensus 286 ~~ls~~----------------~~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~-- 339 (409)
T 4gni_A 286 RALSRS----------------TNASFSVESLIDGLDFASTINRLRY---ETIARTV-----FEGFNRLVESAVKKAG-- 339 (409)
T ss_dssp HHHHHS----------------SEEEEEEEEEETTEEEEEEEEHHHH---HHHTHHH-----HHHHHHHHHHHHHHTT--
T ss_pred HhCCCC----------------CceEEEeecccCCcceEEEeeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--
Confidence 443211 11112221 222 222322222 2233331 1124455555555432
Q ss_pred HHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEE------ECCCCCccccchhhHHhhccc
Q 020045 246 IRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV------VAPPERKYSVWIGGSILASLS 307 (332)
Q Consensus 246 ~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v------~~~~~~~~~~w~Gasi~a~l~ 307 (332)
......+.|+|+||+|++|++.+++++.+.. ++++ ....+|..++..||+++|...
T Consensus 340 ~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~ 401 (409)
T 4gni_A 340 LDPLDVDEVIMSGGTSNTPRIAANFRYIFPE------STRILAPSTDPSALNPSELQARGAALQASLI 401 (409)
T ss_dssp CCGGGCCEEEEESGGGGCHHHHHHHHHHSCT------TSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred CCHHHCCEEEEECCccccHHHHHHHHHHcCC------ccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence 1223457899999999999999999887732 2345 234588999999999998764
No 20
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.49 E-value=3.3e-14 Score=133.35 Aligned_cols=199 Identities=11% Similarity=0.107 Sum_probs=131.8
Q ss_pred HHhHHHHhhhcccccCCCeEEEeechhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHH
Q 020045 70 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 144 (332)
Q Consensus 70 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~ 144 (332)
+...+.+.+++ +..|+....++.+|+|+++++.. .+.+|||+|+++|+++.+.+|.++.. ...++||+++|+
T Consensus 167 ~~~v~n~~~~~-~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~--~~i~~GG~~it~ 243 (419)
T 4a2a_A 167 LKVYEMFYNFL-QDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVGMKHVIK 243 (419)
T ss_dssp HHHHHHHHHHH-HTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE--EEESCCHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE--EecccHHHHHHH
Confidence 44556666664 88999999999999999998865 36899999999999999999988753 568999999999
Q ss_pred HHHHHHHhcCCCccchhHHHHHHHHHHHcccccccHHHHHHHhccCCCccceEECCC--C-ceEeeCCc-cccccccCCC
Q 020045 145 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--G-QVITIGAE-RFRCPEVLFQ 220 (332)
Q Consensus 145 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~--~-~~i~i~~~-~~~~~E~lf~ 220 (332)
.+...+.. ..+.+|++|.+++....+. .....+.+|. + ....++.. ...+.+..+.
T Consensus 244 dIa~~l~~---------~~~~AE~iK~~~g~a~~~~-----------~~~~~i~v~~~~~~~~~~is~~~l~~ii~p~ve 303 (419)
T 4a2a_A 244 DVSAVLDT---------SFEESERLIITHGNAVYND-----------LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLR 303 (419)
T ss_dssp HHHHHHTC---------CHHHHHHHHHHHCCSCCTT-----------CCCCEEEEECTTSCSEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHCC---------CHHHHHHHHHHhccCcccC-----------CCCceEEEeecCCccceEEcHHHHHHHHHHHHH
Confidence 99887642 4567999999887543210 1112233322 1 12222221 1111111211
Q ss_pred CccCCCcCCChHHHHHHHHhcCCH---H-HHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEEC-----C--
Q 020045 221 PSMIGMEAAGIHETTYNSIMKCDV---D-IRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA-----P-- 289 (332)
Q Consensus 221 p~~~~~~~~~l~~~i~~~i~~~~~---~-~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~-----~-- 289 (332)
.+.+.|.+.|+.... + ......+.|+||||+|++||+.+.+++.+. .++++.. |
T Consensus 304 ---------ei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g------~~vri~~~~~~~p~~ 368 (419)
T 4a2a_A 304 ---------EIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFK------SPVRTGCYANSDRPS 368 (419)
T ss_dssp ---------HHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHT------SCEEECCGGGSSSCC
T ss_pred ---------HHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHC------CCeEEEecCCCCchh
Confidence 255666666655432 2 145567889999999999999999999984 3566655 3
Q ss_pred --------CCCccccchhhHHhhcc
Q 020045 290 --------PERKYSVWIGGSILASL 306 (332)
Q Consensus 290 --------~~~~~~~w~Gasi~a~l 306 (332)
.+|.|+.-.|-.+++..
T Consensus 369 ~~~~~~~~~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 369 IINADEVANDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp CBTCHHHHTCGGGHHHHHTTCC---
T ss_pred ccCcccccCCchHHHHHHHHHHHhh
Confidence 36788888888777654
No 21
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.42 E-value=1.8e-12 Score=127.27 Aligned_cols=237 Identities=16% Similarity=0.164 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhh---hhcCCCCCCCcEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhccCC------ceE
Q 020045 37 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTG 107 (332)
Q Consensus 37 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~t~ 107 (332)
+....+|+++.. ..++. .-..+|+++|..++...|+.+.+.+ +..|++.+.++++|.||++++|. .+.
T Consensus 114 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qr~a~~~Aa-~~AGl~v~~li~EP~AAAlaygl~~~~~~~~v 190 (605)
T 4b9q_A 114 QISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTI 190 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEE
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCcHHHHHHHhhhhccCCCCEE
Confidence 344455555432 34443 3457999999999999998766664 78999999999999999998863 467
Q ss_pred EEEeCCCCceEEEEeeCCe----e---cCcceEEEcccHHHHHHHHHHHHHh-----cCCCccchhH-----HHHHHHHH
Q 020045 108 IVLDSGDGVSHTVPIYEGY----A---LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REIVRDMK 170 (332)
Q Consensus 108 lVVDiG~~~t~v~pv~~g~----~---~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~~~~ik 170 (332)
+|+|+|+++++++.+.-+. . +........+||+++++.|.+++.. .+.+...... ...++++|
T Consensus 191 lV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K 270 (605)
T 4b9q_A 191 AVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAK 270 (605)
T ss_dssp EEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHH
Confidence 8999999999999885432 1 2223334579999999999887763 1222211100 22344455
Q ss_pred HHcccccccHHHHHHHhccCCCccceEECCC--C-c--eEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHH
Q 020045 171 EKLAYIALDYEQELETAKTSSAVEKSYELPD--G-Q--VITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVD 245 (332)
Q Consensus 171 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~--~-~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~ 245 (332)
+.+..... ......+...+ | . .+.+....+ |-++.|. ...+.+.|.+++.....
T Consensus 271 ~~Ls~~~~------------~~i~~~~~~~~~~g~~~~~~~itr~~~---e~l~~~~-----~~~i~~~v~~~L~~a~~- 329 (605)
T 4b9q_A 271 IELSSAQQ------------TDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDL-----VNRSIEPLKVALQDAGL- 329 (605)
T ss_dssp HHTTTCSE------------EEEEEEEEEECSSSEEEEEEEEEHHHH---HHHHHHH-----HHHTTHHHHHHHHHTTC-
T ss_pred HhcCcCCC------------eEEEEeeeccCCCCCeeEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC-
Confidence 44332110 00001111111 1 1 122222221 1222220 01133444444443321
Q ss_pred HHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 246 IRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 246 ~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
...-.+.|+|+||+|++|++.+++++.+.. .+....+|..++..||+++|..
T Consensus 330 -~~~~i~~VvLvGG~sriP~v~~~l~~~fg~--------~~~~~~nPdeaVA~GAai~a~~ 381 (605)
T 4b9q_A 330 -SVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp -CGGGCSEEEEESGGGGSHHHHHHHHHHHTS--------CCCSSSCTTTHHHHHHHHHHHH
T ss_pred -CHHHCcEEEEeCCccCchHHHHHHHHHhcc--------CcCCCcChhHHHHHhHHHHHHH
Confidence 112346799999999999999999988832 1234557888999999999864
No 22
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.30 E-value=4.3e-12 Score=115.07 Aligned_cols=179 Identities=12% Similarity=0.146 Sum_probs=108.0
Q ss_pred ccccCCCeEEEeechhhhhhccC-----CceEEEEeCCCCceEEEEeeCCee-cCcceEEEcccHHHHHHHHHHHHHhcC
Q 020045 81 FETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYA-LPHAILRLDLAGRDLTDALMKILTERG 154 (332)
Q Consensus 81 fe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~v~pv~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~ 154 (332)
.+.+++..+.++++|++|+++++ ..+.+|||+|+++|+++.+.+|.+ +..+....++||.++++.+.+.+.+++
T Consensus 135 ~~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~~ 214 (320)
T 2zgy_A 135 GDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 214 (320)
T ss_dssp BCCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCCS
T ss_pred CcEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHcC
Confidence 34567789999999999998763 357899999999999999999876 444456679999999999999887542
Q ss_pred CCccchhHHHHHHHH-HHHcccccccHHHHHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHH
Q 020045 155 YSFTTTAEREIVRDM-KEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHE 233 (332)
Q Consensus 155 ~~~~~~~~~~~~~~i-k~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~ 233 (332)
.+ .+...++++ |.+.... +... .. ..|. ......+ .+.+. ...+.+
T Consensus 215 ~~----i~~~~ae~~lk~~~~~~---~~~~--~i----------~~~~--------~~~~~~~-~i~~~-----~~~~~~ 261 (320)
T 2zgy_A 215 TK----GSSYLADDIIIHRKDNN---YLKQ--RI----------NDEN--------KISIVTE-AMNEA-----LRKLEQ 261 (320)
T ss_dssp BG----GGHHHHHHHHHTTTCHH---HHHH--HS----------SSSC--------THHHHHH-HHHHH-----HHHHHH
T ss_pred CC----CCHHHHHHHHHHhhhhh---cccc--ee----------cCch--------hhHHHHH-HHHHH-----HHHHHH
Confidence 22 234556766 5442100 0000 00 0000 0000000 00000 011333
Q ss_pred HHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 234 TTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 234 ~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
.|.+.+++. .-.+.|+||||+|.+ +.+.++ ..++.. .-++..+.+|+++...|+.+++.
T Consensus 262 ~i~~~i~~~------~~~~~vvl~GGga~l--l~~~l~----~~~~~~-~~~~~~~~~P~~a~A~G~~~~~~ 320 (320)
T 2zgy_A 262 RVLNTLNEF------SGYTHVMVIGGGAEL--ICDAVK----KHTQIR-DERFFKTNNSQYDLVNGMYLIGN 320 (320)
T ss_dssp HHHHHHTTC------CCCCEEEEESTTHHH--HHHHHH----HTSCCC-GGGEECCSCGGGHHHHHHHHHHC
T ss_pred HHHHHHHhh------cCCCeEEEECChHHH--HHHHHH----HHhCCC-CCceeeCCCcHHHHHHHHHHhcC
Confidence 444444332 123679999999987 444444 444321 00245567899999999998863
No 23
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.24 E-value=4.4e-12 Score=116.41 Aligned_cols=147 Identities=8% Similarity=0.074 Sum_probs=95.9
Q ss_pred CCcc-eeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhh---hcCCCCCCCcEEEeeCCCCCHHhH-HHHhhh
Q 020045 5 GQKD-AYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANR-EKMTQI 79 (332)
Q Consensus 5 ~~~~-~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~---~l~~~~~~~~vvl~~~~~~~~~~~-~~l~~~ 79 (332)
+.+. |+||+.|....... ......+.+..+ +....++..++.. .+.-+..+..+++..|.......+ +.+.+.
T Consensus 59 ~~~~~y~vG~~A~~~~~~~-~~~~~~~~k~~~-~~~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~ 136 (355)
T 3js6_A 59 NNDEVLLFGNDLDKTTNTG-KDTASTNDRYDI-KSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKL 136 (355)
T ss_dssp CTTCCEEESTTHHHHCSCC-EECCCSTTGGGS-HHHHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHH
T ss_pred CCeEEEEEchhhhhcCccc-ccccccCCcccC-HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHH
Confidence 3456 99999887542221 112223344433 2333333333322 110011123577777876655555 456666
Q ss_pred cccc-----------cCCCeEEEeechhhhhhccC-----------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcc
Q 020045 80 MFET-----------FNTPAMYVAIQAVLSLYASG-----------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 137 (332)
Q Consensus 80 lfe~-----------~~~~~v~~~~~~~~a~~~~g-----------~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~ 137 (332)
+... +.+..|.++++|++|+++++ ..+.+|||+|+++|+++.+.+|.++...+..+++
T Consensus 137 l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~ 216 (355)
T 3js6_A 137 LNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINK 216 (355)
T ss_dssp HSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESC
T ss_pred hCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcch
Confidence 5432 22478999999999999875 3567999999999999999999998887888999
Q ss_pred cHHHHHHHHHHHHHhc
Q 020045 138 AGRDLTDALMKILTER 153 (332)
Q Consensus 138 GG~~i~~~l~~~l~~~ 153 (332)
||..+++.+.+.++++
T Consensus 217 G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 217 GTIDFYKRIASHVSKK 232 (355)
T ss_dssp CHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 24
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.20 E-value=1.9e-11 Score=111.11 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=89.9
Q ss_pred CCCcceeeccccccccCceeeeccccCCCCCCHHHHHHHHHHHhhhhcCCC-CCCCcEEEeeCCCCCH--HhHHHHhhhc
Q 020045 4 MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPK--ANREKMTQIM 80 (332)
Q Consensus 4 ~~~~~~~vG~~a~~~~~~~~~~~p~~~g~i~d~~~~~~~l~~~~~~~l~~~-~~~~~vvl~~~~~~~~--~~~~~l~~~l 80 (332)
++.+.|+||+.|.... +.... +-+....++..++.+.+... ..+..+++..|...-. ..|+.+.+.+
T Consensus 61 ~~G~~Y~vG~~a~~~~--------~~~~k--~~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l 130 (329)
T 4apw_A 61 LDGKEYLIGEQGVEDS--------SETSK--TNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYI 130 (329)
T ss_dssp CSSSEEEESCCSSSCS--------GGGCC--CTTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHH
T ss_pred ECCEEEEeCccccccc--------ccCCc--CchhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHh
Confidence 4568899998865211 11111 11244455555553434322 1223455555544321 2344444444
Q ss_pred cc-------------ccCCCeEEEeechhhhhhccC----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 020045 81 FE-------------TFNTPAMYVAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 143 (332)
Q Consensus 81 fe-------------~~~~~~v~~~~~~~~a~~~~g----~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~ 143 (332)
-. .+.+..|.+.|++..|++... ..+.+|||+|+++|+++.+.+|.++...+...++||++++
T Consensus 131 ~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~ 210 (329)
T 4apw_A 131 KGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLI 210 (329)
T ss_dssp SSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHH
T ss_pred cCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHH
Confidence 32 123467999999999998762 3578999999999999999999998777778999999999
Q ss_pred HHHHHHHHh
Q 020045 144 DALMKILTE 152 (332)
Q Consensus 144 ~~l~~~l~~ 152 (332)
+.+.+.++.
T Consensus 211 ~~i~~~l~~ 219 (329)
T 4apw_A 211 IRVGDALTD 219 (329)
T ss_dssp HHHHTSSSS
T ss_pred HHHHHHHHh
Confidence 999887765
No 25
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=98.86 E-value=1.7e-09 Score=101.33 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=105.7
Q ss_pred echhhhhhccC-----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHH
Q 020045 93 IQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVR 167 (332)
Q Consensus 93 ~~~~~a~~~~g-----~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 167 (332)
-+|+||.+++= ....++||+|+++|+++.+.+|..+.. ..++.||+++|..+..-|.- .+...+|
T Consensus 390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~VT~DIA~~Lgt--------~d~~~AE 459 (610)
T 2d0o_A 390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDMVTMIIARELGL--------EDRYLAE 459 (610)
T ss_dssp EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHHHHHHHHHHHTC--------CCHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC--------CCHHHHH
Confidence 67778777663 246889999999999999999988764 55899999999999988853 2377899
Q ss_pred HHHHHcccccccHHHHHHHhccCCCccceEEC--CCCceEeeCCccccccc-cCCCC-ccCCCcCCC--hHH--HHHHHH
Q 020045 168 DMKEKLAYIALDYEQELETAKTSSAVEKSYEL--PDGQVITIGAERFRCPE-VLFQP-SMIGMEAAG--IHE--TTYNSI 239 (332)
Q Consensus 168 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l--p~~~~i~i~~~~~~~~E-~lf~p-~~~~~~~~~--l~~--~i~~~i 239 (332)
+||. ++.+..+.. +.- ......+++ |.-. +.. ++. .+..| .+.+. .+. +.| ++.+.+
T Consensus 460 rIK~-YG~A~ve~l-----f~~-~dede~Iev~~~~lg-----p~~--~~Rv~~~~~~~L~~I-~pR~~vEElelVR~~a 524 (610)
T 2d0o_A 460 EIKK-YPLAKVESL-----FHL-RHEDGSVQFFSTPLP-----PAV--FARVCVVKADELVPL-PGDLALEKVRAIRRSA 524 (610)
T ss_dssp HHHH-SCEEEECSS-----SEE-EETTSCEEECSSCCC-----GGG--TTCEEEECSSCEEEC-CTTCCHHHHHHHHHHH
T ss_pred Hhcc-cCceeeccc-----ccc-cCCCCeEEEecCCCC-----cce--eeeeecccccceeee-CCCcchHHHHHHHHHH
Confidence 9999 776543210 000 000111111 1100 000 000 00000 01111 111 333 333331
Q ss_pred hcC---CHHHHH----H-Hh-----cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECC-----CCCccccchhhH
Q 020045 240 MKC---DVDIRK----D-LY-----GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP-----PERKYSVWIGGS 301 (332)
Q Consensus 240 ~~~---~~~~r~----~-l~-----~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~-----~~~~~~~w~Gas 301 (332)
++. -..+|+ . +- ..||||||+|+++|+.+-.++.|..+ ++++-.| ..|.|++..|-.
T Consensus 525 k~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y-----~VRiGrP~~~gv~gP~fAtAvGLl 599 (610)
T 2d0o_A 525 KERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHY-----RLVAGRGNIRGSEGPRNAVATGLI 599 (610)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTS-----SCEEEECCGGGTSTTSCHHHHHHH
T ss_pred hhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCCcHHHHHHHH
Confidence 111 000111 1 12 45999999999999999999888652 4555554 368999888866
Q ss_pred Hh
Q 020045 302 IL 303 (332)
Q Consensus 302 i~ 303 (332)
+|
T Consensus 600 ly 601 (610)
T 2d0o_A 600 LS 601 (610)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=98.84 E-value=1.7e-09 Score=101.67 Aligned_cols=182 Identities=12% Similarity=0.112 Sum_probs=105.3
Q ss_pred echhhhhhccC-----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHhcCCCccchhHHHHHH
Q 020045 93 IQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVR 167 (332)
Q Consensus 93 ~~~~~a~~~~g-----~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 167 (332)
-+|+||.+++= ....++||+|+++|+++.+.+|..+.. ..++.||+++|..+..-|.- .+...+|
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~gG~~VT~DIA~~Lg~--------~d~~~AE 461 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITA--VHLAGAGNMVSLLIKTELGL--------EDLSLAE 461 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEE--EEEECCHHHHHHHHHHHHTC--------SCHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC--------CCHHHHH
Confidence 67777777653 246889999999999999999988764 55899999999999988853 2378899
Q ss_pred HHHHHcccccccHHHHHHHhccCCCccceEEC--CCCceEeeCCccccccccCCC-CccCCCcCCC--hHH--HHHHHHh
Q 020045 168 DMKEKLAYIALDYEQELETAKTSSAVEKSYEL--PDGQVITIGAERFRCPEVLFQ-PSMIGMEAAG--IHE--TTYNSIM 240 (332)
Q Consensus 168 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l--p~~~~i~i~~~~~~~~E~lf~-p~~~~~~~~~--l~~--~i~~~i~ 240 (332)
+||. ++.+..+.. +.- ......+++ |.-..-.+. | + .+.. ..+.+. .+. +.| ++.+.++
T Consensus 462 rIK~-YG~A~~e~l-----f~~-~dede~Iev~~~~lgp~~~~--R--~--~~~~~~~L~~I-~~R~~vEElelVR~~ak 527 (607)
T 1nbw_A 462 AIKK-YPLAKVESL-----FSI-RHENGAVEFFREALSPAVFA--K--V--VYIKEGELVPI-DNASPLEKIRLVRRQAK 527 (607)
T ss_dssp HHHH-SCEEEECSS-----SEE-EETTSCEEECSSCCCGGGTT--C--E--EEEETTEEEEE-CCSSCHHHHHHHHHHHH
T ss_pred Hhcc-cCceeeccc-----ccc-cCCCCeEEEecCCCCcceee--e--e--ecccccceeee-CCCcchHHHHHHHHHHh
Confidence 9999 775543210 000 000111111 110000000 0 0 0000 000011 111 333 3333311
Q ss_pred cC---CHHHHH-----HHh-----cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECC-----CCCccccchhhHH
Q 020045 241 KC---DVDIRK-----DLY-----GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP-----PERKYSVWIGGSI 302 (332)
Q Consensus 241 ~~---~~~~r~-----~l~-----~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~-----~~~~~~~w~Gasi 302 (332)
+. -..+|+ .+- ..||||||+|+++|+.+-.++.|..+ ++++-.| ..|.|++..|-.+
T Consensus 528 ~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~-----~VRiGrP~~~g~~gP~fAtAvGLll 602 (607)
T 1nbw_A 528 EKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHY-----GVVAGQGNIRGTEGPRNAVATGLLL 602 (607)
T ss_dssp HHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTT-----TCEEEECCGGGTSCSCCHHHHHHHH
T ss_pred hhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCchHHHHHHHHH
Confidence 10 000111 112 45999999999999999999999762 4455444 3689998888765
Q ss_pred h
Q 020045 303 L 303 (332)
Q Consensus 303 ~ 303 (332)
|
T Consensus 603 y 603 (607)
T 1nbw_A 603 A 603 (607)
T ss_dssp H
T ss_pred h
Confidence 4
No 27
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.53 E-value=0.00018 Score=63.20 Aligned_cols=169 Identities=17% Similarity=0.210 Sum_probs=92.4
Q ss_pred eEEEeechhhhhhccC---CceEEEEeCCCCceEEEEe-eCCeecC-cceEEEcccHHHHHHHHHHHHHhcCCCccchhH
Q 020045 88 AMYVAIQAVLSLYASG---RTTGIVLDSGDGVSHTVPI-YEGYALP-HAILRLDLAGRDLTDALMKILTERGYSFTTTAE 162 (332)
Q Consensus 88 ~v~~~~~~~~a~~~~g---~~t~lVVDiG~~~t~v~pv-~~g~~~~-~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~ 162 (332)
.+..++++.+.++++. .....|+|+|++.+.++-+ .+|.... ....++.-|+.++.+.+.+.|.. ++...
T Consensus 73 ~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~---~~~~~-- 147 (276)
T 4ehu_A 73 ADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIEV---DVSEL-- 147 (276)
T ss_dssp CSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHHTC---CGGGH--
T ss_pred CCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHhcc---Chhhh--
Confidence 3567889998888764 4566899999999998877 4454321 11223456766677666666632 22211
Q ss_pred HHHHHHHHHHc--c----cccccHHH-HHHHhccCCCccceEECCCCceEeeCCccccccccCCCCccCCCcCCChHHHH
Q 020045 163 REIVRDMKEKL--A----YIALDYEQ-ELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETT 235 (332)
Q Consensus 163 ~~~~~~ik~~~--~----~v~~~~~~-~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i 235 (332)
.++.... . -.+..+.+ ++...... + ... |-+ ..++.+.|
T Consensus 148 ----~~~~~~a~~~~~i~~~~~~f~~s~~~~~~~~-----------~------~~~----~di---------~a~~~~~v 193 (276)
T 4ehu_A 148 ----GSISMNSQNEVSISSTCTVFAESEVISHLSE-----------N------AKI----EDI---------VAGIHTSV 193 (276)
T ss_dssp ----HHHHTTCSSCCCCCCCSHHHHHHHHHHHHHT-----------T------CCH----HHH---------HHHHHHHH
T ss_pred ----HHHHhcCCCCCCcCCccchhhhhHHHHhhhc-----------c------ccH----HHH---------HHHHHHHH
Confidence 1111000 0 00000000 00000000 0 000 000 01233344
Q ss_pred HHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 236 YNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 236 ~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
.+.+... -.+....+.|+++||.++.|+++++|++.+. .++..|++|++.+..||+++|.
T Consensus 194 ~~~l~~~--~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A~ 253 (276)
T 4ehu_A 194 AKRVSSL--VKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYAF 253 (276)
T ss_dssp HHHHHHH--HHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHHH
T ss_pred HHHHHHH--HHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHHH
Confidence 3333221 1233345689999999999999999988772 2466788899999999999984
No 28
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=96.39 E-value=0.017 Score=50.69 Aligned_cols=50 Identities=18% Similarity=0.025 Sum_probs=41.0
Q ss_pred hcCcccccC-ccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 251 YGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 251 ~~nIvl~GG-~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
.++|+++|| .+..|++.++|.+.+.-. ..++..|+++++....||+++++
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~~ 287 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLEK 287 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTCC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhCC
Confidence 357999999 899999999999776442 34677788999999999998763
No 29
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=96.11 E-value=0.0038 Score=54.50 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=38.7
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+.|+++||.++-+++.+.+.+.|.. ++..++.+++....||+++|..
T Consensus 210 ~~i~~~GG~a~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~ 256 (270)
T 1hux_A 210 KDVVMTGGVAQNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYK 256 (270)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHH
T ss_pred CeEEEeCccccCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHH
Confidence 5799999999999999999988833 3555667788899999999854
No 30
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=94.79 E-value=0.062 Score=48.55 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=41.0
Q ss_pred HHHhcCcccccC-ccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhh
Q 020045 248 KDLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 248 ~~l~~nIvl~GG-~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
+.=.++|+++|| .+..|++.+.|.+.|.---. ..+++..+.++++...+||++++
T Consensus 303 ~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~--g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 303 NENIDRVVFVGNFLRINMVSMKLLAYAMDFWSK--GQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp HHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTT--TSCCEEEETTTTCHHHHHHHHHH
T ss_pred HcCCCeEEEeCcccccCHHHHHHHHHHHhhhhc--CCeeEEEcCCccHHHHHHHHHHh
Confidence 334468999999 99999999999998853111 12345556778999999998864
No 31
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=94.01 E-value=0.11 Score=45.33 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=41.2
Q ss_pred HHhhhcccccCCCeEEEeechhhhhhcc-----CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 75 KMTQIMFETFNTPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 75 ~l~~~lfe~~~~~~v~~~~~~~~a~~~~-----g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
.+.+.+ +.+++| |++.++.-+++++- +..+.++|-+|.+ +-...|.||++...
T Consensus 86 ~l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 86 SWYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp BHHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred CHHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence 355666 778887 78999999998873 5678999999986 66777889987643
No 32
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=93.81 E-value=0.25 Score=43.90 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=36.4
Q ss_pred ccc-CCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 82 ETF-NTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 82 e~~-~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+ ++| |++.++.-+++++- +..+.++|-+|.+ +-...|.||+++..
T Consensus 115 ~~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~~G~l~~G 169 (321)
T 3r8e_A 115 SEFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMMNGKLFIG 169 (321)
T ss_dssp HHCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEecC
Confidence 445 666 78999999987752 4578999999976 77788889988753
No 33
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=93.73 E-value=0.043 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=24.1
Q ss_pred ceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 105 TTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
.+|++||||+++|+|+|+.+|+++..
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~g 152 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVAE 152 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred CCEEEEEcCcchhhhhhhcCCeeccc
Confidence 67999999999999999999999763
No 34
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=92.97 E-value=0.66 Score=41.10 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=36.3
Q ss_pred cccCCCeEEEeechhhhhhc-------cCCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 82 ETFNTPAMYVAIQAVLSLYA-------SGRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~-------~g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
+.+++| |++.++.-+++++ .+..+.++|-+|.+ +-...|.||++..
T Consensus 94 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~ 146 (321)
T 3vgl_A 94 QRVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRR 146 (321)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred hhhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEec
Confidence 445777 8899999999876 24578899999976 7777888998775
No 35
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=90.77 E-value=0.27 Score=43.67 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=53.0
Q ss_pred HHhHHHHhhhcccccCCCeEEEeechhhhhhcc-------C-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHH
Q 020045 70 KANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-------G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 141 (332)
Q Consensus 70 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g-~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~ 141 (332)
-.+++.+++.+-+..|++ +.+++..-=|.|++ + ..+++|||+|+++|.++-..++.+.. ...+|+|+-.
T Consensus 96 A~N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~~G~v~ 172 (315)
T 1t6c_A 96 AKNAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVRE--VISLPIGIVN 172 (315)
T ss_dssp STTHHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEEE--EEEECCCHHH
T ss_pred CcCHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCceee--EEEEeccHHH
Confidence 345566777766667765 44555443333322 3 56799999999999999998887754 4568999999
Q ss_pred HHHHH
Q 020045 142 LTDAL 146 (332)
Q Consensus 142 i~~~l 146 (332)
+++.+
T Consensus 173 l~e~~ 177 (315)
T 1t6c_A 173 LTETF 177 (315)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
No 36
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=90.18 E-value=0.83 Score=40.31 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=36.0
Q ss_pred cccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 82 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
+.+++| |.+.++.-+++++- +..+.++|-+|.+ +-...+.+|.+..
T Consensus 106 ~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~ 158 (326)
T 2qm1_A 106 SALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLH 158 (326)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEee
Confidence 345777 78999999988762 4578999999987 6777888998765
No 37
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=89.90 E-value=0.96 Score=39.18 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=36.1
Q ss_pred hcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 79 IMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 79 ~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
.+-+.+++| |.+.++.-+++++- +. +.++|.+|.+ +-...+.||++..
T Consensus 91 ~l~~~~~~p-v~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtG-iG~gii~~G~l~~ 145 (289)
T 2aa4_A 91 TLEQLTNLP-TIAINDAQAAAWAEFQALDGDIT-DMVFITVSTG-VGGGVVSGCKLLT 145 (289)
T ss_dssp HHHHHHCSC-EEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSS-EEEEEEETTEEEC
T ss_pred HHHHHHCCC-EEEechHHHHHHHHHHhCCCCCc-eEEEEEeCcc-EEEEEEECCEEee
Confidence 333446777 88999999998763 34 8999999987 6777888998764
No 38
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=89.76 E-value=1.5 Score=38.78 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=37.5
Q ss_pred hhcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 78 QIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 78 ~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+-+.+++| |++.++.-+++++- +..+.++|-+|.+ +-...|.||++...
T Consensus 114 ~~l~~~~~~p-V~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~G 171 (327)
T 4db3_A 114 ADLEAKIGRS-VKIENDANCFALSEAWDEELQDAPSVMGLILGTG-FGGGLIYEGKVFSG 171 (327)
T ss_dssp HHHHHHHSSC-CEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHHHHHHCCC-EEEecchhHHHHHHHHhCCCCCCCcEEEEEeCcc-ceEEEEECCEEeec
Confidence 3333456787 88999999987753 3577888999876 77777889987653
No 39
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=89.44 E-value=1 Score=39.53 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=36.4
Q ss_pred hcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 79 IMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 79 ~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
.+-+.+++| |++.++.-+++++- +..+.++|-+|.+ +-...|.||++...
T Consensus 93 ~l~~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~g~l~~G 149 (302)
T 3vov_A 93 ILEEATGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVVLGGRVLRG 149 (302)
T ss_dssp HHHHHHSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHHHhhCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEEECCEEeeC
Confidence 333456777 77999998887753 4578899999876 66667789987653
No 40
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=88.83 E-value=0.52 Score=42.35 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=48.6
Q ss_pred HhHHHHhhhcccccCCCeEEEeech---hhhhhcc----C----CceEEEEeCCCCceEEEEeeC--Ceec--CcceEEE
Q 020045 71 ANREKMTQIMFETFNTPAMYVAIQA---VLSLYAS----G----RTTGIVLDSGDGVSHTVPIYE--GYAL--PHAILRL 135 (332)
Q Consensus 71 ~~~~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~----g----~~t~lVVDiG~~~t~v~pv~~--g~~~--~~~~~~~ 135 (332)
.+++.+++.+.+..|++ +.+++.. -++..+. . ..+++|+|+|+++|.++.+.+ +.+. ......+
T Consensus 102 ~N~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Sl 180 (343)
T 3cer_A 102 ENREEFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSM 180 (343)
T ss_dssp TTHHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEE
T ss_pred cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEE
Confidence 34455666666666765 3344433 2222221 2 256999999999999998877 4431 1245679
Q ss_pred cccHHHHHHHH
Q 020045 136 DLAGRDLTDAL 146 (332)
Q Consensus 136 ~~GG~~i~~~l 146 (332)
|+|+..+++.+
T Consensus 181 plG~v~lt~~~ 191 (343)
T 3cer_A 181 NIGSVRMTERH 191 (343)
T ss_dssp SCCHHHHHHHT
T ss_pred ehhHHHHHHHh
Confidence 99999999875
No 41
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=87.86 E-value=0.5 Score=41.92 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=49.2
Q ss_pred HhHHHHhhhcccccCCCeEEEeechhhhh---h------ccCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHH
Q 020045 71 ANREKMTQIMFETFNTPAMYVAIQAVLSL---Y------ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 141 (332)
Q Consensus 71 ~~~~~l~~~lfe~~~~~~v~~~~~~~~a~---~------~~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~ 141 (332)
.++..+++.+-+..|++ +.+++..-=|. + .....+++|+|+|+++|.++.+.++.+.. ...+|+|.-.
T Consensus 89 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vr 165 (315)
T 3mdq_A 89 SNKQVLIDRIKKEVNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEILW--KQSFEIGGQR 165 (315)
T ss_dssp TTHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEEE--EEEESCCHHH
T ss_pred cCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEee--eEEEechhhH
Confidence 34455666666666765 34444332222 1 11235799999999999999999887765 4568999998
Q ss_pred HHHHH
Q 020045 142 LTDAL 146 (332)
Q Consensus 142 i~~~l 146 (332)
+++.+
T Consensus 166 l~e~f 170 (315)
T 3mdq_A 166 LIDRF 170 (315)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 88764
No 42
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=84.63 E-value=1.3 Score=41.95 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=49.4
Q ss_pred HhHHHHhhhcccccCCCeEEEeechhhhhh---c----cCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 020045 71 ANREKMTQIMFETFNTPAMYVAIQAVLSLY---A----SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 143 (332)
Q Consensus 71 ~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~---~----~g~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i~ 143 (332)
.+...+++.+.+..|++ +.+++..-=|.+ + .....++|||||+++|.++-+.++.+.. ...+|+|.-.++
T Consensus 100 ~N~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~ 176 (508)
T 3hi0_A 100 ENGPDFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGE--GITLPLGGLRLS 176 (508)
T ss_dssp TTHHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEECC--CEEESCCHHHHH
T ss_pred cCHHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeeee--EEEecceEEehh
Confidence 34455666666667765 445543322222 1 2345789999999999999999998765 356899998888
Q ss_pred HH
Q 020045 144 DA 145 (332)
Q Consensus 144 ~~ 145 (332)
+.
T Consensus 177 e~ 178 (508)
T 3hi0_A 177 EQ 178 (508)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 43
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=81.90 E-value=1.4 Score=41.89 Aligned_cols=73 Identities=10% Similarity=0.023 Sum_probs=50.8
Q ss_pred HhHHHHhhhcccccCCCeEEEeechhhhhhcc-------C-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 020045 71 ANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-------G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 142 (332)
Q Consensus 71 ~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g-~~t~lVVDiG~~~t~v~pv~~g~~~~~~~~~~~~GG~~i 142 (332)
.++..+++.+-+..|++ |.+++..-=|.+++ . ...++|+|||+++|.++-..++.+.. ...+|+|.-.+
T Consensus 96 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl 172 (513)
T 1u6z_A 96 LNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSF 172 (513)
T ss_dssp TTHHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEEE--EEEESCCHHHH
T ss_pred cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeeeE--EEEEeccHHHH
Confidence 44466777777777875 44555433232221 1 23799999999999999998887764 45689999999
Q ss_pred HHHH
Q 020045 143 TDAL 146 (332)
Q Consensus 143 ~~~l 146 (332)
++.+
T Consensus 173 te~f 176 (513)
T 1u6z_A 173 AQLY 176 (513)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 44
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=76.96 E-value=9.7 Score=34.93 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=35.6
Q ss_pred cccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 020045 82 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 129 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~ 129 (332)
+.+++| |++.++.-+++++- +..+.++|-+|.+ +-...|.||.+..
T Consensus 206 ~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~ 258 (429)
T 1z05_A 206 KATGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIVLDGRVLQ 258 (429)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred HHhCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEEECCEEee
Confidence 346777 78999999998763 4578999999876 6677888988664
No 45
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=75.94 E-value=9.5 Score=34.63 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.0
Q ss_pred cccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 82 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+++| |++.++.-+++++- +..+.++|-+|.+ +-...|.||.+...
T Consensus 184 ~~~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 237 (406)
T 1z6r_A 184 QHTGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVITDGHLLHA 237 (406)
T ss_dssp HHHSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEETTT
T ss_pred HHHCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEEECCEEeec
Confidence 345777 78999999988762 4578999999976 67778889987653
No 46
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=75.36 E-value=15 Score=32.42 Aligned_cols=174 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HhhhcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecC-------------------
Q 020045 76 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP------------------- 129 (332)
Q Consensus 76 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~------------------- 129 (332)
+.+.+-+.+++| |.+.++.-+++++- +..+.++|-+|.+ +-...|.+|++..
T Consensus 123 l~~~l~~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~G~~g~aGEiGh~~~~~~g~ 200 (343)
T 2yhw_A 123 LRTPLSDTLHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIHGSSFCAAELGHLVVSLXGP 200 (343)
T ss_dssp CHHHHHHHHCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECCCTTSCTTCGGGCBCCC--C
T ss_pred HHHHHHHHHCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEecCCCCcccccCCEEEccCCC
Q ss_pred ------cceEEEcccHHHHHHHHHHHHHhcCCCcc-------chhHHHHHHHHHHHcccccccHHHHHHHhccCCCccce
Q 020045 130 ------HAILRLDLAGRDLTDALMKILTERGYSFT-------TTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 196 (332)
Q Consensus 130 ------~~~~~~~~GG~~i~~~l~~~l~~~~~~~~-------~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (332)
..+.....++..+.+.+.+.......... ...+.+.+.+.-++---......++....
T Consensus 201 ~c~cG~~gclE~~~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~gd~~a~~il~~~~~~--------- 271 (343)
T 2yhw_A 201 DCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHLIQAAKLGNAKAQSILRTAGTA--------- 271 (343)
T ss_dssp BCTTSCBSBHHHHHSHHHHHHHHHHHHHTTCSCCTTCCC----CCCHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred cCCCCCCCcHHHhcCHHHHHHHHHHhhcccccccccccccccccCCHHHHHHHHHcCCHHHHHHHHHHHHH---------
Q ss_pred EECCCCceEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHHhcCcccccCccCCcChHHHHHHHHHh
Q 020045 197 YELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA 276 (332)
Q Consensus 197 ~~lp~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 276 (332)
|...+...+..++++ .|||.||.+ +-|.+.+++.+..
T Consensus 272 ----------------------------------La~~i~~l~~~l~P~-------~IvlgG~i~--~~~~~~l~~~l~~ 308 (343)
T 2yhw_A 272 ----------------------------------LGLGVVNILHTMNPS-------LVILSGVLA--SHYIHIVKDVIRQ 308 (343)
T ss_dssp ----------------------------------HHHHHHHHHHHTCCS-------EEEEESTTH--HHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHhCCC-------EEEEeCCcH--HHHHHHHHHHHHH
Q ss_pred h-CCCCceEEEECCCCCccccchhhHHhh
Q 020045 277 L-APSSMKIKVVAPPERKYSVWIGGSILA 304 (332)
Q Consensus 277 ~-~~~~~~v~v~~~~~~~~~~w~Gasi~a 304 (332)
. .+....+++....... ++..||+.++
T Consensus 309 ~~~~~~~~~~i~~s~~~~-~~~~GAa~l~ 336 (343)
T 2yhw_A 309 QALSSVQDVDVVVSDLVD-PALLGAASMV 336 (343)
T ss_dssp HSCGGGTTCEEEECCCSC-HHHHHHHHHH
T ss_pred hcccccCCcEEEEccCCC-chHHHHHHHH
No 47
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=75.02 E-value=42 Score=29.31 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhhhcCCCCC-C-CcEEEeeCCCCCHHhHHHHhhhcccccC--CCeEEEeechhhhhhccCCceEEEEe
Q 020045 36 WDDMEKIWHHTFYNELRVAPE-E-HPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSLYASGRTTGIVLD 111 (332)
Q Consensus 36 ~~~~~~~l~~~~~~~l~~~~~-~-~~vvl~~~~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~g~~t~lVVD 111 (332)
++.+.+.++.++. ..+.++. + ..+-+..|-.........+.+.+-+.++ ...|.+.++.-+++++....++++|-
T Consensus 49 ~~~i~~~i~~~~~-~~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~~~~~~v~v~ 127 (347)
T 2ch5_A 49 VERINEMVNRAKR-KAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLI 127 (347)
T ss_dssp HHHHHHHHHHHHH-HHTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHH-hcCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhhCCCCcEEEE
Confidence 3444455555542 2333332 2 3466767766555444445555444554 23478999999998885346778888
Q ss_pred CCCCceEEEEeeCCe
Q 020045 112 SGDGVSHTVPIYEGY 126 (332)
Q Consensus 112 iG~~~t~v~pv~~g~ 126 (332)
+|.+.-......+|.
T Consensus 128 ~GTGig~~~v~~~G~ 142 (347)
T 2ch5_A 128 SGTGSNCRLINPDGS 142 (347)
T ss_dssp ESSSEEEEEECTTSC
T ss_pred EcCCceeEEEcCCCC
Confidence 887644332223554
No 48
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=69.47 E-value=3.3 Score=37.22 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=26.0
Q ss_pred ceEEEEeCCCCceEEEEeeC--CeecCcceEEEcccHH
Q 020045 105 TTGIVLDSGDGVSHTVPIYE--GYALPHAILRLDLAGR 140 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv~~--g~~~~~~~~~~~~GG~ 140 (332)
.+.+|+|+|+++|.++-..+ +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 46999999999999997744 3333333466788874
No 49
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=64.62 E-value=4.2 Score=35.31 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=37.1
Q ss_pred CcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 253 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 253 nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
.|||.||.+..+.|.+++++.+...... .+++....-...+.-.||+.++.
T Consensus 240 ~IvlgGgi~~~~~~~~~l~~~l~~~~~~--~~~i~~s~lg~~a~~~GAa~l~~ 290 (297)
T 4htl_A 240 HIFIGGGITSRPTFIAELKHHMESFGLR--DTIIETATHKNQAGLLGAVYHFL 290 (297)
T ss_dssp EEEEESGGGGSTTHHHHHHHHHTTTCCT--TCEEEECSCTTTHHHHHHHHHHH
T ss_pred EEEEeCcccccHHHHHHHHHHHHHhccC--CCeEEECCcCChHHHHhHHHHHH
Confidence 4899999998888999999988865543 33454444445678889887663
No 50
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=54.85 E-value=7.8 Score=34.93 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=35.1
Q ss_pred CcccccCccCC-cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhc
Q 020045 253 NIVLSGGSTMF-PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 305 (332)
Q Consensus 253 nIvl~GG~s~i-~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 305 (332)
.|||.||.+.. +-|.+.+++.+.+.......+++........+...||+.++-
T Consensus 317 ~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 317 KIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp EEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred EEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 58888888764 667788888888765432334554443334567889887763
No 51
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=50.86 E-value=8.3 Score=33.60 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=38.3
Q ss_pred hhcccccCCCeEEEeechhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeecCcc
Q 020045 78 QIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPHA 131 (332)
Q Consensus 78 ~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~v~pv~~g~~~~~~ 131 (332)
+.+-+.+++| |.+.++.-+++++- +..+.+.|-+|.+ +-...|.||+++...
T Consensus 91 ~~l~~~~~~p-V~v~NDanaaalaE~~~G~~~~~~~~~~l~~GtG-iG~gii~~G~l~~G~ 149 (302)
T 3epq_A 91 QTVXNEMXIP-VGFSTDVNAAALGEFLFGEAXGLDSCLYITIGTG-IGAGAIVEGRLLQGL 149 (302)
T ss_dssp HHHHHHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECCSS
T ss_pred HHHHHHhCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEcccC
Confidence 3333456787 88999999888753 3578899999865 777778899887643
No 52
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=44.83 E-value=14 Score=32.12 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=38.2
Q ss_pred CcccccCccCCcC-hHHHHHHHHHhhCCC---CceEEEECCCCCccccchhhHHhhccccccc
Q 020045 253 NIVLSGGSTMFPG-IADRMSKEITALAPS---SMKIKVVAPPERKYSVWIGGSILASLSTFQQ 311 (332)
Q Consensus 253 nIvl~GG~s~i~G-~~erl~~eL~~~~~~---~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~ 311 (332)
.|||.||.+..+. +.+.+.+.+++.... ..++++....-...+.-.||+.++--..|..
T Consensus 242 ~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~~~~~~ 304 (310)
T 3htv_A 242 AVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQ 304 (310)
T ss_dssp EEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHHHHCC-
T ss_pred EEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHHHhhcc
Confidence 4888888887754 467788777766531 1245665554456778899988875444443
No 53
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=41.87 E-value=16 Score=32.33 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=23.5
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhh
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITAL 277 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~ 277 (332)
.++|+++||.+.-..+.+++.+.+...
T Consensus 250 ~~~vvlsGGVa~N~~L~~~L~~~l~~~ 276 (334)
T 3eno_A 250 KDEILMAGGVALNRRLRDMVTNMAREA 276 (334)
T ss_dssp CSEEEEESSGGGCHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc
Confidence 368999999999999999999988654
No 54
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=40.86 E-value=23 Score=32.90 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=39.8
Q ss_pred CcccccCccCCcChHHHHHHHHHhhCCC------CceEEEECCCCCccccchhhHHhhcc
Q 020045 253 NIVLSGGSTMFPGIADRMSKEITALAPS------SMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 253 nIvl~GG~s~i~G~~erl~~eL~~~~~~------~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.|.+-||...-|+|.+++++.++.+++. ..+|++....| .+=.||+++|..
T Consensus 386 ~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~d---gsg~GAAl~aa~ 442 (457)
T 2yhx_A 386 HIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAID---GXGAASXVIXSI 442 (457)
T ss_dssp EEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECCC---TTTHHHHHHHHH
T ss_pred EEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEECCC---chhhhHHHHHHH
Confidence 3777788878899999999999988754 34677766544 688999998876
No 55
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=38.31 E-value=16 Score=32.86 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred CcccccCccCCcC-hHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 253 NIVLSGGSTMFPG-IADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 253 nIvl~GG~s~i~G-~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.|||+||.+...- |.+++++.+.... ++.+........+...||+.++.-
T Consensus 298 ~IvlgGgi~~~~~~l~~~i~~~l~~~~----~~~i~~~~~~~~a~~~GAa~l~~~ 348 (381)
T 1saz_A 298 FIVLTGGLAHEKEFLVPWITKRVSFIA----PVLVFPGSNEEKALALSALRVLRG 348 (381)
T ss_dssp EEEEEEGGGGCTTTHHHHHHHHHTTTS----CEEEEEBCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCcCccChHHHHHHHHHHHHhhc----CeEEEecCcchhHHHHHHHHHHcC
Confidence 5999999987655 8888888887654 455554433334677888877643
No 56
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=37.68 E-value=17 Score=32.00 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.6
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 290 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~ 290 (332)
.++|+++||.+.-..+.+++.+.+.... ++++.++
T Consensus 245 ~~~vvlsGGVa~N~~l~~~l~~~l~~~g-----~~v~~p~ 279 (330)
T 2ivn_A 245 KDEVVLVGGVAANNRLREMLRIMTEDRG-----IKFFVPP 279 (330)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHHT-----CEEECCC
T ss_pred CCeEEEEccHHHHHHHHHHHHHHHHHcC-----CEEEecC
Confidence 4589999999999999999998886542 3566554
No 57
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=37.37 E-value=60 Score=27.61 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=33.9
Q ss_pred EEEEeCCCCceEEEEeeCCeecCcceEEE-cccHHHHHHHHHHHHHhcCC
Q 020045 107 GIVLDSGDGVSHTVPIYEGYALPHAILRL-DLAGRDLTDALMKILTERGY 155 (332)
Q Consensus 107 ~lVVDiG~~~t~v~pv~~g~~~~~~~~~~-~~GG~~i~~~l~~~l~~~~~ 155 (332)
-|+||+|.+.+....+.++..+....... ....+.+...+..++...+.
T Consensus 4 lL~IDIGNT~iK~gl~d~~~l~~~~r~~T~~~t~de~~~~l~~ll~~~~~ 53 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENNC 53 (266)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTTC
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 48999999999999888876654432222 24566676777777776553
No 58
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=36.59 E-value=7.5 Score=34.10 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=35.6
Q ss_pred cccCCCeEEEeechhhhhhc---c----CCceEEEEeCCCCceEEEEeeCCeecCc
Q 020045 82 ETFNTPAMYVAIQAVLSLYA---S----GRTTGIVLDSGDGVSHTVPIYEGYALPH 130 (332)
Q Consensus 82 e~~~~~~v~~~~~~~~a~~~---~----g~~t~lVVDiG~~~t~v~pv~~g~~~~~ 130 (332)
+.+++| |.+.++.-+++++ . +..+.++|-+|.+ +-...|.+|.+...
T Consensus 118 ~~~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 171 (327)
T 2ap1_A 118 ARLDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVLNGKPITG 171 (327)
T ss_dssp HHHTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEEECCEEeec
Confidence 346777 8899999998875 2 3568899999876 66777889987653
No 59
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=36.42 E-value=27 Score=32.38 Aligned_cols=22 Identities=14% Similarity=-0.071 Sum_probs=18.5
Q ss_pred ceEEEEeCCCCceEEEEeeCCe
Q 020045 105 TTGIVLDSGDGVSHTVPIYEGY 126 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv~~g~ 126 (332)
.+..|+|+|+++|.|+-..+..
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4689999999999999876654
No 60
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=35.18 E-value=1.6e+02 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=14.3
Q ss_pred ceEEEEeCCCCceEEEEe-eCC
Q 020045 105 TTGIVLDSGDGVSHTVPI-YEG 125 (332)
Q Consensus 105 ~t~lVVDiG~~~t~v~pv-~~g 125 (332)
..++|||+|...| +..| .+|
T Consensus 123 ~~~iVVD~GTAtT-~d~v~~~g 143 (268)
T 2h3g_X 123 SPLIIVDFGTATT-YCYINEEK 143 (268)
T ss_dssp SSEEEEEESSEEE-EEEECTTS
T ss_pred CCEEEEECCCceE-EEEECCCC
Confidence 6799999998766 4444 444
No 61
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=34.69 E-value=13 Score=31.91 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=35.9
Q ss_pred cEEEeeCCCCCHHhHHHHhhhcccccCCCeEEEeechhhhhhcc-CCceEEEEeCCCC
Q 020045 59 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-GRTTGIVLDSGDG 115 (332)
Q Consensus 59 ~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-g~~t~lVVDiG~~ 115 (332)
.+-+..|-..+......+.+.+-+ ++. .+.+.++.-+++++. ...+.+++-+|.+
T Consensus 62 ~igi~~~G~~~~~~~~~l~~~l~~-~~~-pv~v~ND~~aaa~~e~~~~~~v~l~~GTG 117 (299)
T 2e2o_A 62 VVGMGVAGLDSKFDWENFTPLASL-IAP-KVIIQHDGVIALFAETLGEPGVVVIAGTG 117 (299)
T ss_dssp EEEEEETTCCSHHHHHHHHHHHTT-SSS-EEEEEEHHHHHHHHHHTTSCEEEEEESSS
T ss_pred EEEEEcCCCCchhHHHHHHHHHHh-CCC-CEEEeCcHHHHHhhccCCCCeEEEEecCC
Confidence 466666655433333344444433 664 477899999888874 3577889999988
No 62
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=32.99 E-value=25 Score=32.68 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=30.8
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+.|+++||.|+-+-+.+.+.+-+ ..+|.+. +....++-.||+++|..
T Consensus 388 ~~i~~~GG~a~s~~~~Qi~Adv~------g~pV~~~--~~~e~~~alGAA~lA~~ 434 (484)
T 2itm_A 388 QSVTLIGGGARSEYWRQMLADIS------GQQLDYR--TGGDVGPALGAARLAQI 434 (484)
T ss_dssp SCEEEESGGGCCHHHHHHHHHHH------CCCEEEE--SCTTSCHHHHHHHHHHH
T ss_pred ceEEEEeccccCHHHHHHHHHHh------CCeEEeC--CCCCcccHHHHHHHHHH
Confidence 56999999998876666555544 2244443 33333478899988764
No 63
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=32.03 E-value=14 Score=33.12 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=33.3
Q ss_pred ccCCCeEEEeechhhhhhc----------------c--------------C----CceEEEEeCCCCceEEEEeeCCeec
Q 020045 83 TFNTPAMYVAIQAVLSLYA----------------S--------------G----RTTGIVLDSGDGVSHTVPIYEGYAL 128 (332)
Q Consensus 83 ~~~~~~v~~~~~~~~a~~~----------------~--------------g----~~t~lVVDiG~~~t~v~pv~~g~~~ 128 (332)
.+++..|.+.++.-+++++ . | ..+.++|-+|.+ +-...|.+|.+.
T Consensus 126 ~~~~~pv~v~NDa~aaalge~~l~~~~~~~~~~~E~~~~~~~~~~~~~~~g~~~~~~~~~~v~~GTG-iG~gii~~g~l~ 204 (373)
T 2q2r_A 126 LFPPGHSAILNDLEAGGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTG-LGSSLIYYNPPM 204 (373)
T ss_dssp TSCTTSEEEEEHHHHHHHHHHHHHHTTCHHHHEEEEECCTTTTTTCSSCTTSSCCSSCEEEEEESSS-EEEEEEEECC--
T ss_pred hcCCCCEEEEccHhHHhccccccChhhhccccchhhcccccccccccCCCcCcCCCCCEEEEEeCCc-eeEEEEecCccc
Confidence 3777568899999998888 2 3 267899999876 556777888765
Q ss_pred Cc
Q 020045 129 PH 130 (332)
Q Consensus 129 ~~ 130 (332)
..
T Consensus 205 ~G 206 (373)
T 2q2r_A 205 NQ 206 (373)
T ss_dssp -C
T ss_pred CC
Confidence 43
No 64
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=31.92 E-value=13 Score=33.42 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=19.8
Q ss_pred cCcccccCccCCcChHHHHHHHH
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEI 274 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL 274 (332)
+.|++|||++.-+-|.+||++.|
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l 307 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLM 307 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHC
T ss_pred ceEEEECCccCcHHHHHHHHHhC
Confidence 46999999999998888888665
No 65
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=29.83 E-value=38 Score=31.38 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=40.0
Q ss_pred CCCcEEEeeCCCC---C---HHhHHHHhhhccccc---CC--CeEEEeech-------hhhhhccCC------ceEEEEe
Q 020045 56 EEHPVLLTEAPLN---P---KANREKMTQIMFETF---NT--PAMYVAIQA-------VLSLYASGR------TTGIVLD 111 (332)
Q Consensus 56 ~~~~vvl~~~~~~---~---~~~~~~l~~~lfe~~---~~--~~v~~~~~~-------~~a~~~~g~------~t~lVVD 111 (332)
+..|+.+.-..-+ + ...++.+++.+-+.+ +| ..+.+++.. +++.|..|. .+..++|
T Consensus 108 ~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lD 187 (452)
T 3zx3_A 108 HQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALD 187 (452)
T ss_dssp TTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEE
T ss_pred CCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEe
Confidence 4567776644322 1 123344554444333 22 467776643 333334452 5677899
Q ss_pred CCCCceEEEEeeCCe
Q 020045 112 SGDGVSHTVPIYEGY 126 (332)
Q Consensus 112 iG~~~t~v~pv~~g~ 126 (332)
+|+++|.|+-..++.
T Consensus 188 lGGgStQi~f~~~~~ 202 (452)
T 3zx3_A 188 LGGASTQITFVPLNS 202 (452)
T ss_dssp ECSSEEEEEECCSSC
T ss_pred cCCCceEEEeccCCC
Confidence 999999999665553
No 66
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=28.45 E-value=34 Score=31.68 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=36.4
Q ss_pred cccccCcc-CCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 254 IVLSGGST-MFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 254 Ivl~GG~s-~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
|++.||.. .-|.|.+++++.++.++....++++... ..++..||+++|..
T Consensus 396 V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~~l~---~dgs~iGAAllA~~ 446 (451)
T 1bdg_A 396 VGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLS---EDGSGKGAAAIAAS 446 (451)
T ss_dssp EEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEEEEC---TTHHHHHHHHHHTT
T ss_pred EEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEEEEC---CCccHHHHHHHHHH
Confidence 44556653 5789999999999988644556666633 55799999998765
No 67
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=28.29 E-value=2e+02 Score=24.20 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=45.4
Q ss_pred cEEEeeCCCCCHHhHHHHhhhcccccCC-CeEEEeechhhhhhc-cCCceEEEEeCCCCceEEEEeeCCeec
Q 020045 59 PVLLTEAPLNPKANREKMTQIMFETFNT-PAMYVAIQAVLSLYA-SGRTTGIVLDSGDGVSHTVPIYEGYAL 128 (332)
Q Consensus 59 ~vvl~~~~~~~~~~~~~l~~~lfe~~~~-~~v~~~~~~~~a~~~-~g~~t~lVVDiG~~~t~v~pv~~g~~~ 128 (332)
.+-+..|-.. +.....+.+.+-+.+++ ..+.+.++.-+|+++ .+..+++++=+|.+..-...+.||+..
T Consensus 62 ~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~ 132 (291)
T 1zbs_A 62 AVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKA 132 (291)
T ss_dssp EEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEE
T ss_pred EEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEE
Confidence 3556666544 22222344444444564 368999999999998 577888888888776555556788764
No 68
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=28.26 E-value=57 Score=30.38 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=31.7
Q ss_pred hcCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 251 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 251 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.+.|+++||.|+-+-+.+.+.+-+ ..+|.+.... -++..||+++|..
T Consensus 394 ~~~i~~~GG~a~s~~~~Qi~Adv~------g~pV~~~~~~---e~~alGaA~lA~~ 440 (497)
T 2zf5_O 394 IKELRVDGGATANDFLMQFQADIL------NRKVIRPVVK---ETTALGAAYLAGL 440 (497)
T ss_dssp CCCEEEESGGGGCHHHHHHHHHHH------TSCEEEESCS---CHHHHHHHHHHHH
T ss_pred cceEEEeCccccCHHHHHHHHhhc------CCeEEEcCCC---cchHHHHHHHHHH
Confidence 356999999998876666555544 2355544332 2688899998864
No 69
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=27.78 E-value=95 Score=26.79 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=32.3
Q ss_pred eEEEEeCCCCceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHHH
Q 020045 106 TGIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILT 151 (332)
Q Consensus 106 t~lVVDiG~~~t~v~pv-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~ 151 (332)
-.+.||+|.+.+.++.+ .+|.++.......+.+...+.+.+.+.+.
T Consensus 3 ~~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~~~~~~~~~~~i~~~i~ 49 (321)
T 3vgl_A 3 LTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTAEGIVDAICAAVA 49 (321)
T ss_dssp EEEEEEECSSEEEEEEECTTCCBCCCEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCEEEEEEECCCCCEEEEEEeeCCCCHHHHHHHHHHHHH
Confidence 36889999999999988 46777766554445566666666655544
No 70
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=26.71 E-value=18 Score=32.56 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=19.1
Q ss_pred CcccccCccCCcChHHHHHHHH
Q 020045 253 NIVLSGGSTMFPGIADRMSKEI 274 (332)
Q Consensus 253 nIvl~GG~s~i~G~~erl~~eL 274 (332)
.|++|||++.-+-|.+||++.|
T Consensus 292 ~v~vcGGGa~N~~Lm~~L~~~l 313 (370)
T 3cqy_A 292 ELFVCGGGAFNAELMQRLAALL 313 (370)
T ss_dssp EEEEESGGGGCHHHHHHHHHHC
T ss_pred EEEEECCCcCCHHHHHHHHHhC
Confidence 6999999999998888887665
No 71
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=26.51 E-value=29 Score=35.33 Aligned_cols=50 Identities=14% Similarity=0.313 Sum_probs=38.8
Q ss_pred CcccccCccCC-cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 253 NIVLSGGSTMF-PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 253 nIvl~GG~s~i-~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
.|++-||.+.- |.|.+++++.+.++.+. .++++... ..++-.||+++|..
T Consensus 409 ~IvigGgV~~~~~~~~~~l~~~l~~~~~~-~~~~i~~a---~dgs~~GAA~laa~ 459 (917)
T 1cza_N 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPD-SDVRFLLS---ESGSGKGAAMVTAV 459 (917)
T ss_dssp EEEEECHHHHHCSSHHHHHHHHHHHHCTT-EEEEEEEC---TTCHHHHHHHHHHH
T ss_pred EEEECCchhhccHHHHHHHHHHHHHhcCC-CceEEEEe---ccchHHHHHHHHHh
Confidence 47777777666 99999999999998754 56777655 44788999998865
No 72
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.07 E-value=49 Score=30.82 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=31.8
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+.|+++||.|+-+-+.+.+.+-+ ..+|.+.... -++-.||+++|..
T Consensus 400 ~~i~~~GG~a~n~~~~q~~Adv~------g~pV~~~~~~---e~~alGaA~la~~ 445 (495)
T 2dpn_A 400 KVLKADGGMAQNRLFLKIQADLL------GVPVAVPEVT---ETTALGAALMAGV 445 (495)
T ss_dssp CCEEEESGGGGCHHHHHHHHHHH------TSCEEEESCS---CHHHHHHHHHHHH
T ss_pred cEEEEecccccCHHHHHHHHHHh------CCeeEecCCc---ccHHHHHHHHHHh
Confidence 46999999999876666666555 2355554332 2678899998865
No 73
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=21.60 E-value=2.7e+02 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=33.1
Q ss_pred CCceEEEEeCCCCceEEEEeeCCeecCcc-eEEEcc-cHHHHHHHHHH
Q 020045 103 GRTTGIVLDSGDGVSHTVPIYEGYALPHA-ILRLDL-AGRDLTDALMK 148 (332)
Q Consensus 103 g~~t~lVVDiG~~~t~v~pv~~g~~~~~~-~~~~~~-GG~~i~~~l~~ 148 (332)
.....+.||+|.+.+.++.+.+|.++... ....+. +...+-+.+.+
T Consensus 7 d~~~~lgiDIGgt~i~~~l~d~G~il~~~~~~~~~~~~~~~~l~~i~~ 54 (366)
T 3mcp_A 7 DNRIVMTLDAGGTNFVFSAIQGGKEIADPVVLPACADCLDKCLGNLVE 54 (366)
T ss_dssp CCCEEEEEECSSSEEEEEEEETTEECSCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEEECcceEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHH
Confidence 34567899999999999988888888765 433333 45666666666
No 74
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=21.40 E-value=92 Score=28.98 Aligned_cols=46 Identities=28% Similarity=0.254 Sum_probs=31.6
Q ss_pred cCcccccCccCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhHHhhcc
Q 020045 252 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 306 (332)
Q Consensus 252 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 306 (332)
+.|+++||.|+-+-+.+.+.+-+ ..+|.+....+ ++-.||+++|..
T Consensus 409 ~~i~~~GG~a~s~~~~Q~~Adv~------g~pV~~~~~~e---~~alGaA~la~~ 454 (503)
T 2w40_A 409 HVLRCDGGMTKNKPFMQFNSDII------NTKIEVSKYKE---VTSLGAAVLAGL 454 (503)
T ss_dssp SCEEEESGGGGCHHHHHHHHHHH------TSCEEEESCSC---HHHHHHHHHHHH
T ss_pred ceEEEeCccccCHHHHHHHHHHH------CCeEEecCCCc---chHHHHHHHHHH
Confidence 66999999999876666665554 23555543332 678899998764
Done!